Citrus Sinensis ID: 021362
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 313 | 2.2.26 [Sep-21-2011] | |||||||
| Q9UTC5 | 235 | Putative uridine kinase C | yes | no | 0.610 | 0.812 | 0.357 | 5e-32 | |
| P11664 | 237 | Uncharacterized protein Y | N/A | no | 0.683 | 0.902 | 0.317 | 4e-19 | |
| C5DNG5 | 347 | ATP-dependent kinase YFH7 | yes | no | 0.699 | 0.631 | 0.270 | 4e-19 | |
| C5DXG0 | 375 | ATP-dependent kinase YFH7 | yes | no | 0.559 | 0.466 | 0.293 | 1e-17 | |
| C7GYB3 | 353 | ATP-dependent kinase YFH7 | N/A | no | 0.444 | 0.393 | 0.271 | 3e-15 | |
| A7A245 | 353 | ATP-dependent kinase YFH7 | N/A | no | 0.444 | 0.393 | 0.271 | 4e-15 | |
| B5VI33 | 353 | ATP-dependent kinase YFH7 | N/A | no | 0.444 | 0.393 | 0.271 | 4e-15 | |
| B3LUL5 | 353 | ATP-dependent kinase YFH7 | N/A | no | 0.444 | 0.393 | 0.271 | 4e-15 | |
| P43591 | 353 | ATP-dependent kinase YFH7 | yes | no | 0.444 | 0.393 | 0.271 | 4e-15 | |
| C8Z7U0 | 353 | ATP-dependent kinase YFH7 | N/A | no | 0.444 | 0.393 | 0.271 | 4e-15 |
| >sp|Q9UTC5|YIDE_SCHPO Putative uridine kinase C227.14 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC227.14 PE=3 SV=1 | Back alignment and function desciption |
|---|
Score = 138 bits (347), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 74/207 (35%), Positives = 119/207 (57%), Gaps = 16/207 (7%)
Query: 109 IVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLD 168
++GLAG PG+GKSTL A + K W ++ S ++ ++PMDGFH L +LD
Sbjct: 31 LIGLAGGPGSGKSTLCAILA----KAWNERFGS--------EIVKIIPMDGFHYSLEELD 78
Query: 169 AMEDPKEAHARRGAPWTFNPLLLLNCLKNLR--NQGSVYAPSFDHGVGDPVEDDILVGLQ 226
++P++A A RGA WTF+ L + ++ ++ +YAPSFDH +GDPV DDI V +
Sbjct: 79 RFDNPEKARALRGAEWTFDADLFYSLVRLMKKITDRELYAPSFDHAIGDPVVDDICVEPK 138
Query: 227 HKVVIVDGNYLFLDGGVWKDVSSMFDEKWFIEVDLDTAMQRVLKRHISTG--KPPDVAKW 284
++++I +GNYL L+ W D ++D K ++ V+ A RV RH+ +G + A
Sbjct: 139 NRILIFEGNYLLLNKPPWSDACKLYDIKAYLPVEHSVARARVAHRHLVSGLCATEEEAIE 198
Query: 285 RIEYNDRPNAELIMKSKKNADLVIKSI 311
R + ND N + K+ D+V++ +
Sbjct: 199 RTDRNDMINLTFVEKNMVTPDIVLQQL 225
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Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812) EC: 2EC: .EC: 7EC: .EC: 1EC: .EC: 4EC: 8 |
| >sp|P11664|YGGC_ECOLI Uncharacterized protein YggC OS=Escherichia coli (strain K12) GN=yggC PE=4 SV=2 | Back alignment and function description |
|---|
Score = 95.9 bits (237), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 76/239 (31%), Positives = 116/239 (48%), Gaps = 25/239 (10%)
Query: 78 VEARCMDEVYDALAQRLLPTSALASNVNVKH--IVGLAGPPGAGKSTLAAEVVRRINKIW 135
++A+ +E + + + LL A VN + +V L PPG GKSTL W
Sbjct: 12 IQAQYQNEEIENVHKPLLHMLAALQTVNPQRRTVVFLCAPPGTGKSTLTT--------FW 63
Query: 136 PQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCL 195
A D ++ P + T LPMDGFH Y S LDA + +GAP TF+ +
Sbjct: 64 EYLAQQ-DPEL--PAIQT-LPMDGFHHYNSWLDA----HQLRPFKGAPETFD---VAKLT 112
Query: 196 KNLRN--QGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253
+NLR +G P +D DPVED + V +VIV+GN+L LD W +++S D
Sbjct: 113 ENLRQVVEGDCTWPQYDRQKHDPVEDALHVTA--PLVIVEGNWLLLDDEKWLELASFCDF 170
Query: 254 KWFIEVDLDTAMQRVLKRHISTGKPPDVAKWRIEYNDRPNAELIMKSKKNADLVIKSID 312
FI +R++ R I+ G VA+ D PN E ++ + + A+L+++ +
Sbjct: 171 SIFIHAPAQILRERLISRKIAGGLTRQVAEAFYARTDGPNVERVLMNSRQANLIVEMTE 229
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Escherichia coli (strain K12) (taxid: 83333) |
| >sp|C5DNG5|YFH7_LACTC ATP-dependent kinase YFH7 OS=Lachancea thermotolerans (strain ATCC 56472 / CBS 6340 / NRRL Y-8284) GN=YFH7 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 95.5 bits (236), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 75/277 (27%), Positives = 117/277 (42%), Gaps = 58/277 (20%)
Query: 75 IPVVEARCMDEVYDALA-----QRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVR 129
IP E + + +V + Q P + N + +VG+ G P +
Sbjct: 81 IPKFEEKSLHDVQNGFFNHVQDQDFQPKKFVDKNDGSEVVVGIGGLPNS----------I 130
Query: 130 RINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNP- 188
R+ + P + S+ D ++ A ++PMDGFHL LD +DP EAH RRG+P TF+
Sbjct: 131 RVENVAPLEPSNHDYKI-----AKIVPMDGFHLSRRHLDHFDDPVEAHRRRGSPPTFDSN 185
Query: 189 -------LLLLNCL--------KNLRNQG---------------SVYAPSFDHGVGDPVE 218
LL C K + G S+Y P FDH + DP
Sbjct: 186 NCLQLCKLLAKTCTIKPTLPVNKTTADTGTLFDKISDTFSESVPSIYVPGFDHALKDPST 245
Query: 219 DDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK-----WFIEVDLDTAMQRVLKRHI 273
V ++++++G YL LD W+D+ F + W +++ +D QRV KRH+
Sbjct: 246 GQHCVDAFTRIIVLEGLYLLLDEDNWRDIYPTFKDTHAVIVWKLDLGVDVLEQRVAKRHL 305
Query: 274 STGKPP--DVAKWRIEYNDRPNAELIMKSKKNADLVI 308
+G + R ND NA I + AD ++
Sbjct: 306 QSGLAATLEAGVERFRMNDLINALRIKEHCLAADDIV 342
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ATP-dependent kinase that could be involved in endoplasmic reticulum membrane assembly. Lachancea thermotolerans (strain ATCC 56472 / CBS 6340 / NRRL Y-8284) (taxid: 559295) EC: 2 EC: . EC: 7 EC: . EC: 1 EC: . EC: - |
| >sp|C5DXG0|YFH7_ZYGRC ATP-dependent kinase YFH7 OS=Zygosaccharomyces rouxii (strain ATCC 2623 / CBS 732 / NBRC 1130 / NCYC 568 / NRRL Y-229) GN=YFH7 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 90.9 bits (224), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 66/225 (29%), Positives = 98/225 (43%), Gaps = 50/225 (22%)
Query: 108 HIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQL 167
I+G G P A + N + P + SSF A ++PMDGFHL L
Sbjct: 156 QILGRGGLPNAFTIS---------NDVEPDEESSF---------AQIVPMDGFHLSRQCL 197
Query: 168 DAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ-----GSVYA---------------- 206
+ ++P+EAH RRG+P TF+ K L GS A
Sbjct: 198 SSFQNPQEAHKRRGSPPTFDSNNFAQLCKTLAQTCTIKPGSCDAKSCFEFMAKTYDPHFP 257
Query: 207 ----PSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK-----WFI 257
P FDH + DP D + ++VI++G YL D W+ V + W+I
Sbjct: 258 CIKIPGFDHSLKDPTPDQFCLNGHTRIVILEGLYLLYDKENWQRVHEILQNTGSLLVWYI 317
Query: 258 EVDLDTAMQRVLKRHISTGKPPDVAKWRIEY--NDRPNAELIMKS 300
+++ +RV KRH ++G V + R+++ ND NA LI K+
Sbjct: 318 DIEDHVIEERVAKRHFNSGLADSVEQGRLKFQGNDLLNARLIRKN 362
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ATP-dependent kinase that could be involved in endoplasmic reticulum membrane assembly. Zygosaccharomyces rouxii (strain ATCC 2623 / CBS 732 / NBRC 1130 / NCYC 568 / NRRL Y-229) (taxid: 559307) EC: 2 EC: . EC: 7 EC: . EC: 1 EC: . EC: - |
| >sp|C7GYB3|YFH7_YEAS2 ATP-dependent kinase YFH7 OS=Saccharomyces cerevisiae (strain JAY291) GN=YFH7 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 82.4 bits (202), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 47/173 (27%), Positives = 77/173 (44%), Gaps = 34/173 (19%)
Query: 150 DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQG------- 202
++A ++PMDGFHL LD +DP+ AH RRG+P TF+ L K L
Sbjct: 154 NIAQIVPMDGFHLSRRCLDLFKDPQTAHKRRGSPSTFDSNNFLQLCKILAKTSLCKVSSH 213
Query: 203 ----------------------SVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLD 240
++ P F+H + DP D + ++VI++G YL D
Sbjct: 214 HKFYSTSSVFEKLSKTFSQKIPDIFVPGFNHALKDPTPDQYCISKFTRIVILEGLYLLYD 273
Query: 241 GGVWKDVSSMFDEK-----WFIEVDLDTAMQRVLKRHISTGKPPDVAKWRIEY 288
WK + + + I++D + +RV KRH+ +G +A+ R ++
Sbjct: 274 QENWKKIYKTLADTGALLVYKIDIDYEATEERVAKRHLQSGLVTTIAEGREKF 326
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ATP-dependent kinase that could be involved in endoplasmic reticulum membrane assembly. Saccharomyces cerevisiae (strain JAY291) (taxid: 574961) EC: 2 EC: . EC: 7 EC: . EC: 1 EC: . EC: - |
| >sp|A7A245|YFH7_YEAS7 ATP-dependent kinase YFH7 OS=Saccharomyces cerevisiae (strain YJM789) GN=YFH7 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 82.4 bits (202), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 47/173 (27%), Positives = 77/173 (44%), Gaps = 34/173 (19%)
Query: 150 DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQG------- 202
++A ++PMDGFHL LD +DP+ AH RRG+P TF+ L K L
Sbjct: 154 NIAQIVPMDGFHLSRRCLDLFKDPQTAHKRRGSPSTFDSNNFLQLCKILAKTSLCKVSSH 213
Query: 203 ----------------------SVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLD 240
++ P F+H + DP D + ++VI++G YL D
Sbjct: 214 HKFYSTSSVFEKLSKTFSQTIPDIFVPGFNHALKDPTPDQYCISKFTRIVILEGLYLLYD 273
Query: 241 GGVWKDVSSMFDEK-----WFIEVDLDTAMQRVLKRHISTGKPPDVAKWRIEY 288
WK + + + I++D + +RV KRH+ +G +A+ R ++
Sbjct: 274 QENWKKIYKTLADTGALLVYKIDIDYEATEERVAKRHLQSGLVTTIAEGREKF 326
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ATP-dependent kinase that could be involved in endoplasmic reticulum membrane assembly. Saccharomyces cerevisiae (strain YJM789) (taxid: 307796) EC: 2 EC: . EC: 7 EC: . EC: 1 EC: . EC: - |
| >sp|B5VI33|YFH7_YEAS6 ATP-dependent kinase YFH7 OS=Saccharomyces cerevisiae (strain AWRI1631) GN=YFH7 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 82.4 bits (202), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 47/173 (27%), Positives = 77/173 (44%), Gaps = 34/173 (19%)
Query: 150 DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQG------- 202
++A ++PMDGFHL LD +DP+ AH RRG+P TF+ L K L
Sbjct: 154 NIAQIVPMDGFHLSRRCLDLFKDPQTAHKRRGSPSTFDSNNFLQLCKILAKTSLCKVSSH 213
Query: 203 ----------------------SVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLD 240
++ P F+H + DP D + ++VI++G YL D
Sbjct: 214 HKFYSTSSVFEKLSKTFSQTIPDIFVPGFNHALKDPTPDQYCISKFTRIVILEGLYLLYD 273
Query: 241 GGVWKDVSSMFDEK-----WFIEVDLDTAMQRVLKRHISTGKPPDVAKWRIEY 288
WK + + + I++D + +RV KRH+ +G +A+ R ++
Sbjct: 274 QENWKKIYKTLADTGALLVYKIDIDYEATEERVAKRHLQSGLVTTIAEGREKF 326
|
ATP-dependent kinase that could be involved in endoplasmic reticulum membrane assembly. Saccharomyces cerevisiae (strain AWRI1631) (taxid: 545124) EC: 2 EC: . EC: 7 EC: . EC: 1 EC: . EC: - |
| >sp|B3LUL5|YFH7_YEAS1 ATP-dependent kinase YFH7 OS=Saccharomyces cerevisiae (strain RM11-1a) GN=YFH7 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 82.4 bits (202), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 47/173 (27%), Positives = 77/173 (44%), Gaps = 34/173 (19%)
Query: 150 DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQG------- 202
++A ++PMDGFHL LD +DP+ AH RRG+P TF+ L K L
Sbjct: 154 NIAQIVPMDGFHLSRRCLDLFKDPQTAHKRRGSPSTFDSNNFLQLCKILAKTSLCKVSSH 213
Query: 203 ----------------------SVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLD 240
++ P F+H + DP D + ++VI++G YL D
Sbjct: 214 HKFYSTSSVFEKLSKTFSQTIPDIFVPGFNHALKDPTPDQYCISKFTRIVILEGLYLLYD 273
Query: 241 GGVWKDVSSMFDEK-----WFIEVDLDTAMQRVLKRHISTGKPPDVAKWRIEY 288
WK + + + I++D + +RV KRH+ +G +A+ R ++
Sbjct: 274 QENWKKIYKTLADTGALLVYKIDIDYEATEERVAKRHLQSGLVTTIAEGREKF 326
|
ATP-dependent kinase that could be involved in endoplasmic reticulum membrane assembly. Saccharomyces cerevisiae (strain RM11-1a) (taxid: 285006) EC: 2 EC: . EC: 7 EC: . EC: 1 EC: . EC: - |
| >sp|P43591|YFH7_YEAST ATP-dependent kinase YFH7 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YFH7 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 82.4 bits (202), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 47/173 (27%), Positives = 77/173 (44%), Gaps = 34/173 (19%)
Query: 150 DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQG------- 202
++A ++PMDGFHL LD +DP+ AH RRG+P TF+ L K L
Sbjct: 154 NIAQIVPMDGFHLSRRCLDLFKDPQTAHKRRGSPSTFDSNNFLQLCKILAKTSLCKVSSH 213
Query: 203 ----------------------SVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLD 240
++ P F+H + DP D + ++VI++G YL D
Sbjct: 214 HKFYSTSSVFEKLSKTFSQTIPDIFVPGFNHALKDPTPDQYCISKFTRIVILEGLYLLYD 273
Query: 241 GGVWKDVSSMFDEK-----WFIEVDLDTAMQRVLKRHISTGKPPDVAKWRIEY 288
WK + + + I++D + +RV KRH+ +G +A+ R ++
Sbjct: 274 QENWKKIYKTLADTGALLVYKIDIDYEATEERVAKRHLQSGLVTTIAEGREKF 326
|
ATP-dependent kinase that could be involved in endoplasmic reticulum membrane assembly. Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292) EC: 2 EC: . EC: 7 EC: . EC: 1 EC: . EC: - |
| >sp|C8Z7U0|YFH7_YEAS8 ATP-dependent kinase YFH7 OS=Saccharomyces cerevisiae (strain Lalvin EC1118 / Prise de mousse) GN=YFH7 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 82.4 bits (202), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 47/173 (27%), Positives = 77/173 (44%), Gaps = 34/173 (19%)
Query: 150 DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQG------- 202
++A ++PMDGFHL LD +DP+ AH RRG+P TF+ L K L
Sbjct: 154 NIAQIVPMDGFHLSRRCLDLFKDPQTAHKRRGSPSTFDSNNFLQLCKILAKTSLCKVSSH 213
Query: 203 ----------------------SVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLD 240
++ P F+H + DP D + ++VI++G YL D
Sbjct: 214 HKFYSTSSVFEKLSKTFSQTIPDIFVPGFNHALKDPTPDQYCISKFTRIVILEGLYLLYD 273
Query: 241 GGVWKDVSSMFDEK-----WFIEVDLDTAMQRVLKRHISTGKPPDVAKWRIEY 288
WK + + + I++D + +RV KRH+ +G +A+ R ++
Sbjct: 274 QENWKKIYKTLADTGALLVYKIDIDYEATEERVAKRHLQSGLVTTIAEGREKF 326
|
ATP-dependent kinase that could be involved in endoplasmic reticulum membrane assembly. Saccharomyces cerevisiae (strain Lalvin EC1118 / Prise de mousse) (taxid: 643680) EC: 2 EC: . EC: 7 EC: . EC: 1 EC: . EC: - |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 313 | ||||||
| 255559925 | 312 | ATP binding protein, putative [Ricinus c | 0.993 | 0.996 | 0.729 | 1e-129 | |
| 225437219 | 312 | PREDICTED: putative uridine kinase C227. | 0.993 | 0.996 | 0.697 | 1e-122 | |
| 449452236 | 309 | PREDICTED: putative uridine kinase C227. | 0.980 | 0.993 | 0.667 | 1e-120 | |
| 224082738 | 231 | predicted protein [Populus trichocarpa] | 0.738 | 1.0 | 0.831 | 1e-112 | |
| 356572241 | 309 | PREDICTED: ATP-dependent kinase YFH7-lik | 0.968 | 0.980 | 0.633 | 1e-109 | |
| 297843102 | 301 | phosphoribulokinase/uridine kinase [Arab | 0.955 | 0.993 | 0.666 | 1e-109 | |
| 42561642 | 301 | P-loop containing nucleoside triphosphat | 0.961 | 1.0 | 0.651 | 1e-108 | |
| 357157235 | 322 | PREDICTED: putative uridine kinase C227. | 0.782 | 0.760 | 0.677 | 1e-98 | |
| 4587575 | 270 | Belongs to PF|01121 Uncharacterized prot | 0.862 | 1.0 | 0.594 | 2e-98 | |
| 326508064 | 322 | predicted protein [Hordeum vulgare subsp | 0.843 | 0.819 | 0.640 | 3e-97 |
| >gi|255559925|ref|XP_002520981.1| ATP binding protein, putative [Ricinus communis] gi|223539818|gb|EEF41398.1| ATP binding protein, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 468 bits (1204), Expect = e-129, Method: Compositional matrix adjust.
Identities = 229/314 (72%), Positives = 265/314 (84%), Gaps = 3/314 (0%)
Query: 1 MDVSSLSTTPRACLSSSSTESTPLKRGELPSGHDGFLSFSWIRRNTNAQPVFGK-TRSLV 59
M+VSSLS T RAC S +TES LKR PS H +S S +R + Q +F + T V
Sbjct: 1 MEVSSLSITSRACPFSPATESLLLKRIRRPSLHQCLVSISLNKRTS--QSLFSRQTGPTV 58
Query: 60 QNKTSLKVLCSQQREIPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAG 119
+ S+KVLCS +R++PVVEA M E+YDALA+R+LP +A ASN N+KHIVGLAGPPGAG
Sbjct: 59 FKENSIKVLCSLRRDVPVVEASSMGEIYDALAERILPAAAAASNPNLKHIVGLAGPPGAG 118
Query: 120 KSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHAR 179
KST+A+EVVRR+NKIWPQKASSFDSQVKPPDVA VLPMDGFHLY SQLDAME+P EAHAR
Sbjct: 119 KSTIASEVVRRVNKIWPQKASSFDSQVKPPDVAAVLPMDGFHLYRSQLDAMENPDEAHAR 178
Query: 180 RGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFL 239
RGAPWTF+P LLL CLK LRN+GSVYAPSFDHGVGDPVEDDI V LQHKV+IV+GNYL L
Sbjct: 179 RGAPWTFSPTLLLECLKKLRNEGSVYAPSFDHGVGDPVEDDIFVSLQHKVIIVEGNYLLL 238
Query: 240 DGGVWKDVSSMFDEKWFIEVDLDTAMQRVLKRHISTGKPPDVAKWRIEYNDRPNAELIMK 299
G WKD+SSMFDEKW+I+VD+DTAM+RVLKRHISTGKPPDVAKWRI+YNDRPNAELI+K
Sbjct: 239 GEGAWKDISSMFDEKWYIDVDIDTAMERVLKRHISTGKPPDVAKWRIDYNDRPNAELIIK 298
Query: 300 SKKNADLVIKSIDI 313
S+KNADL+I+SI+
Sbjct: 299 SRKNADLIIRSINF 312
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225437219|ref|XP_002281875.1| PREDICTED: putative uridine kinase C227.14 [Vitis vinifera] gi|297735493|emb|CBI17933.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 442 bits (1138), Expect = e-122, Method: Compositional matrix adjust.
Identities = 219/314 (69%), Positives = 263/314 (83%), Gaps = 3/314 (0%)
Query: 1 MDVSSLSTTPRACLSSSST-ESTPLKRGELPSGHDGFLSFSWIRRNTNAQPVFGKTRSLV 59
M+V+S ST+ + SSSS+ E L++ ++P + + S RR+ QP+FG TRS
Sbjct: 1 MEVASFSTSSQGFWSSSSSSELFLLRKVKVPITYRCSVLNSPTRRSV--QPLFGGTRSQF 58
Query: 60 QNKTSLKVLCSQQREIPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAG 119
++ LKV CSQ+ EIPVV+ RCMDE+YD LA+RLLPT+A+ASN N+K IVGLAGPPGAG
Sbjct: 59 GRESCLKVSCSQKGEIPVVDGRCMDEIYDTLAERLLPTAAVASNPNLKRIVGLAGPPGAG 118
Query: 120 KSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHAR 179
KSTLA+EV R+NK+WPQKASSFDSQV PPDVA VLPMDGFHLY QLDAMEDP+EAHAR
Sbjct: 119 KSTLASEVAWRVNKLWPQKASSFDSQVGPPDVAAVLPMDGFHLYRHQLDAMEDPEEAHAR 178
Query: 180 RGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFL 239
RGAPWTF+P LL CLK LR++GSVYAPSFDHGVGDPVEDDI + LQHKVVIV+GNYL L
Sbjct: 179 RGAPWTFDPTRLLTCLKRLRHEGSVYAPSFDHGVGDPVEDDIFISLQHKVVIVEGNYLLL 238
Query: 240 DGGVWKDVSSMFDEKWFIEVDLDTAMQRVLKRHISTGKPPDVAKWRIEYNDRPNAELIMK 299
G WK+VSSMFDEKWFIEVD++T+M+RV+KRH+STGKPPD+AKWRIEYNDRPNAELI+K
Sbjct: 239 QEGDWKEVSSMFDEKWFIEVDINTSMERVVKRHVSTGKPPDIAKWRIEYNDRPNAELIIK 298
Query: 300 SKKNADLVIKSIDI 313
SK+NADLVI+S++
Sbjct: 299 SKRNADLVIRSVNF 312
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449452236|ref|XP_004143866.1| PREDICTED: putative uridine kinase C227.14-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 436 bits (1122), Expect = e-120, Method: Compositional matrix adjust.
Identities = 207/310 (66%), Positives = 253/310 (81%), Gaps = 3/310 (0%)
Query: 4 SSLSTTPRACLSSSSTESTPLKRGELPSGHDGFLSFSWIRRNTNAQPVFGKTRSLVQNKT 63
+S S ++ S+ + +K +P H+ FLSF+ + + G+T +
Sbjct: 3 ASFSLAAAKGINLSAELVSFVKEKPVPRDHN-FLSFNSAYKYRSLH--CGQTNGFCRKNK 59
Query: 64 SLKVLCSQQREIPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTL 123
+ V CSQ+RE VVE RC+D++YD LA+RLLPT+A AS+ ++K+IVGLAGPPGAGK+T+
Sbjct: 60 CVTVFCSQKREFSVVEGRCIDDIYDDLARRLLPTAAAASDPDLKYIVGLAGPPGAGKTTI 119
Query: 124 AAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAP 183
A+EVV+R+NK+WPQKASS DSQV P DVA VLPMDGFHLY SQLD+ME+P+EAHARRGAP
Sbjct: 120 ASEVVQRLNKLWPQKASSMDSQVNPADVAAVLPMDGFHLYRSQLDSMENPEEAHARRGAP 179
Query: 184 WTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGV 243
WTFNP LLL CLK LR+QGSVYAPSFDHGVGDPVEDDI VGLQHKVVIV+GNYL LD GV
Sbjct: 180 WTFNPQLLLTCLKTLRSQGSVYAPSFDHGVGDPVEDDIFVGLQHKVVIVEGNYLLLDDGV 239
Query: 244 WKDVSSMFDEKWFIEVDLDTAMQRVLKRHISTGKPPDVAKWRIEYNDRPNAELIMKSKKN 303
WK++SS+FDEKWF+E+D+D +M+RVLKRHISTGKPPDVAKWRIEYNDRPNAELIMKSKKN
Sbjct: 240 WKEISSIFDEKWFVEIDIDKSMERVLKRHISTGKPPDVAKWRIEYNDRPNAELIMKSKKN 299
Query: 304 ADLVIKSIDI 313
ADL+I+S+D
Sbjct: 300 ADLLIRSVDF 309
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224082738|ref|XP_002306820.1| predicted protein [Populus trichocarpa] gi|222856269|gb|EEE93816.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 409 bits (1052), Expect = e-112, Method: Compositional matrix adjust.
Identities = 192/231 (83%), Positives = 212/231 (91%)
Query: 83 MDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSF 142
MDE+YDALA RLLPT+ ASN N K+IV LAGPPGAGKSTLA+E+V R+N++WPQKASSF
Sbjct: 1 MDEIYDALAIRLLPTAPAASNPNFKYIVALAGPPGAGKSTLASEIVHRVNRLWPQKASSF 60
Query: 143 DSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQG 202
D QVKPPDVA VLPMDGFHLY SQLDAME+P+EAHARRGAPWTF+P LLL CL+ LRN+G
Sbjct: 61 DLQVKPPDVAAVLPMDGFHLYRSQLDAMENPEEAHARRGAPWTFSPTLLLRCLEKLRNEG 120
Query: 203 SVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEKWFIEVDLD 262
SVYAPSFDHGVGDPVEDDI V LQHKVVIV+GNYL L+ G WKDVSSMFDEKWFI+VD+D
Sbjct: 121 SVYAPSFDHGVGDPVEDDIFVSLQHKVVIVEGNYLLLEDGAWKDVSSMFDEKWFIDVDID 180
Query: 263 TAMQRVLKRHISTGKPPDVAKWRIEYNDRPNAELIMKSKKNADLVIKSIDI 313
TAMQRVLKRHISTGKPPDVAKWRIEYND+PNAELI+KSKKNADLVI+SID
Sbjct: 181 TAMQRVLKRHISTGKPPDVAKWRIEYNDQPNAELIIKSKKNADLVIRSIDF 231
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356572241|ref|XP_003554278.1| PREDICTED: ATP-dependent kinase YFH7-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 400 bits (1027), Expect = e-109, Method: Compositional matrix adjust.
Identities = 202/319 (63%), Positives = 239/319 (74%), Gaps = 16/319 (5%)
Query: 1 MDVSSLSTTPRACLSSSSTESTPL------KRGELPSGHDGFLSFSWIRRNTNAQPVFGK 54
M+ + STT R + + + PL R PS S S R + Q +
Sbjct: 1 MEATFSSTTARGYWNQTRGSTEPLLLRVDEARDRKPS------SLSIARPSKFVQLSLAR 54
Query: 55 TRSLVQNKTSLKVLCSQQREIPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAG 114
TR + KVL +++ +I VVE +DE+YDAL R+LP +++SN N K +VGLAG
Sbjct: 55 TR----KSSFFKVLSAEKEQIHVVEGSRVDELYDALVTRILPLVSVSSNPNHKLLVGLAG 110
Query: 115 PPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPK 174
PPGAGKSTLA EV RRINK+WP+KASSFDSQV+ PDVA V+PMDGFHLY S+LD ME+P+
Sbjct: 111 PPGAGKSTLAHEVARRINKLWPEKASSFDSQVQLPDVAIVVPMDGFHLYRSELDEMENPE 170
Query: 175 EAHARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDG 234
EAHARRGAPWTFNPL LL CLKNLR GSVY PSFDHGVGDPVEDDI V LQHKVVIV+G
Sbjct: 171 EAHARRGAPWTFNPLRLLQCLKNLRMHGSVYVPSFDHGVGDPVEDDIFVNLQHKVVIVEG 230
Query: 235 NYLFLDGGVWKDVSSMFDEKWFIEVDLDTAMQRVLKRHISTGKPPDVAKWRIEYNDRPNA 294
NYL L+ GVWK++SS+FDEKWFI++D+D AMQRVLKRHISTGKPPD+AK RIE NDR NA
Sbjct: 231 NYLLLEDGVWKEISSLFDEKWFIDIDIDKAMQRVLKRHISTGKPPDIAKQRIENNDRLNA 290
Query: 295 ELIMKSKKNADLVIKSIDI 313
ELIMKSKKNAD++IKSID
Sbjct: 291 ELIMKSKKNADIIIKSIDF 309
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297843102|ref|XP_002889432.1| phosphoribulokinase/uridine kinase [Arabidopsis lyrata subsp. lyrata] gi|297335274|gb|EFH65691.1| phosphoribulokinase/uridine kinase [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 399 bits (1025), Expect = e-109, Method: Compositional matrix adjust.
Identities = 210/315 (66%), Positives = 247/315 (78%), Gaps = 16/315 (5%)
Query: 1 MDVSSLSTTPRACLSSSSTESTPLKRGELPSGHDGFLSFSWIRRNTNAQPVFGKTRSLVQ 60
M+VSS ST PR C S S EL S GF W Q + S +
Sbjct: 1 MEVSSFSTVPRYCNSRSFV-------AEL-SRFRGFNVHLW------DQSLVPLHLSFRK 46
Query: 61 NKTSLKVL--CSQQREIPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGA 118
KT+ + L CSQ++++ VV+ CMDE+YD LA+RL+PT+A + N+K +VGLAGPPGA
Sbjct: 47 RKTTPRFLISCSQKKDVTVVDGSCMDEIYDKLAERLVPTAAAMFSPNLKRLVGLAGPPGA 106
Query: 119 GKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHA 178
GKSTLA EVVRR+NK+WPQKASSFD++VKP DVA VLPMDGFHLY SQLDAMEDPKEAHA
Sbjct: 107 GKSTLANEVVRRVNKLWPQKASSFDAEVKPSDVAIVLPMDGFHLYRSQLDAMEDPKEAHA 166
Query: 179 RRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLF 238
RRGAPWTF+P LLLNCLK L+N+GSVY PSFDHGVGDPVEDDI V LQHKVVIV+GNY+
Sbjct: 167 RRGAPWTFDPALLLNCLKKLKNEGSVYVPSFDHGVGDPVEDDIFVSLQHKVVIVEGNYIL 226
Query: 239 LDGGVWKDVSSMFDEKWFIEVDLDTAMQRVLKRHISTGKPPDVAKWRIEYNDRPNAELIM 298
L+ G WKD+S MFDEKWFI+V+LDTAMQRV RHISTGKPPDVAKWR++YNDRPNAELI+
Sbjct: 227 LEEGSWKDISDMFDEKWFIDVNLDTAMQRVENRHISTGKPPDVAKWRVDYNDRPNAELII 286
Query: 299 KSKKNADLVIKSIDI 313
KSK NADL+I+S++I
Sbjct: 287 KSKTNADLLIRSVNI 301
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|42561642|ref|NP_171802.2| P-loop containing nucleoside triphosphate hydrolase-like protein [Arabidopsis thaliana] gi|63147412|gb|AAY34179.1| At1g03030 [Arabidopsis thaliana] gi|108385285|gb|ABF85769.1| At1g03030 [Arabidopsis thaliana] gi|110737366|dbj|BAF00628.1| hypothetical protein [Arabidopsis thaliana] gi|332189396|gb|AEE27517.1| P-loop containing nucleoside triphosphate hydrolase-like protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 396 bits (1018), Expect = e-108, Method: Compositional matrix adjust.
Identities = 204/313 (65%), Positives = 244/313 (77%), Gaps = 12/313 (3%)
Query: 1 MDVSSLSTTPRACLSSSSTESTPLKRGELPSGHDGFLSFSWIRRNTNAQPVFGKTRSLVQ 60
M+VSS ST PR C S S RG F W + + P+ R +
Sbjct: 1 MEVSSFSTVPRYCNSRSFVPELSRFRG--------FKVHLW---DQSLVPLHFSIRKR-K 48
Query: 61 NKTSLKVLCSQQREIPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGK 120
N + CSQ++++ VV+ CMDE+YD LA+RL+PT+A + N+K +VGLAGPPGAGK
Sbjct: 49 NTPRYLISCSQKKDVTVVDGSCMDEIYDKLAERLVPTAAAMFSPNLKRLVGLAGPPGAGK 108
Query: 121 STLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARR 180
ST+A EVVRR+NK+WPQKA+SFD++V PPDVA VLPMDGFHLY SQLDAMEDPKEAHARR
Sbjct: 109 STVANEVVRRVNKLWPQKAASFDAEVNPPDVAIVLPMDGFHLYRSQLDAMEDPKEAHARR 168
Query: 181 GAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLD 240
GAPWTF+P LLLNCLK L+N+GSVY PSFDHGVGDPVEDDI V LQHKVVIV+GNY+ L+
Sbjct: 169 GAPWTFDPALLLNCLKKLKNEGSVYVPSFDHGVGDPVEDDIFVSLQHKVVIVEGNYILLE 228
Query: 241 GGVWKDVSSMFDEKWFIEVDLDTAMQRVLKRHISTGKPPDVAKWRIEYNDRPNAELIMKS 300
G WKD+S MFDEKWFI+V+LDTAMQRV RHISTGKPPDVAKWR++YNDRPNAELI+KS
Sbjct: 229 EGSWKDISDMFDEKWFIDVNLDTAMQRVENRHISTGKPPDVAKWRVDYNDRPNAELIIKS 288
Query: 301 KKNADLVIKSIDI 313
K NADL+I+S++I
Sbjct: 289 KTNADLLIRSMNI 301
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357157235|ref|XP_003577730.1| PREDICTED: putative uridine kinase C227.14-like [Brachypodium distachyon] | Back alignment and taxonomy information |
|---|
Score = 365 bits (937), Expect = 1e-98, Method: Compositional matrix adjust.
Identities = 166/245 (67%), Positives = 202/245 (82%)
Query: 69 CSQQREIPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVV 128
C Q++ P +EA+ M+EVYDALA+ LL +++ K+IVGLAGPPGAGKST+A+EVV
Sbjct: 76 CYQRQGAPQIEAKSMEEVYDALAEHLLSVLKDVDHLDSKYIVGLAGPPGAGKSTVASEVV 135
Query: 129 RRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNP 188
RR+N W +K ++ S + D+AT+LPMDGFHLY SQLDAMEDPKEAHARRGAPWTFNP
Sbjct: 136 RRVNMHWSKKHATDSSLISNEDIATMLPMDGFHLYRSQLDAMEDPKEAHARRGAPWTFNP 195
Query: 189 LLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVS 248
L LNCLK LR +GSVYAPSFDHGVGDPVE+DI V QHK+VIV+GNYL L+ +W+D+
Sbjct: 196 SLFLNCLKTLRKEGSVYAPSFDHGVGDPVENDIFVKPQHKIVIVEGNYLLLEENIWRDIR 255
Query: 249 SMFDEKWFIEVDLDTAMQRVLKRHISTGKPPDVAKWRIEYNDRPNAELIMKSKKNADLVI 308
MFDEKWFIE+D+D +MQRVL+RHI TGK PDVA WRI YNDRPNAELIM+S+K+ADLVI
Sbjct: 256 GMFDEKWFIEIDIDVSMQRVLQRHIGTGKEPDVAAWRISYNDRPNAELIMQSRKDADLVI 315
Query: 309 KSIDI 313
+S+D
Sbjct: 316 RSVDF 320
|
Source: Brachypodium distachyon Species: Brachypodium distachyon Genus: Brachypodium Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|4587575|gb|AAD25806.1|AC006550_14 Belongs to PF|01121 Uncharacterized protein family UPF0038 containing ATP/GTP binding domain. ESTs gb|AA585719, gb|AA728503 and gb|T22272 come from this gene [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 365 bits (937), Expect = 2e-98, Method: Compositional matrix adjust.
Identities = 186/313 (59%), Positives = 225/313 (71%), Gaps = 43/313 (13%)
Query: 1 MDVSSLSTTPRACLSSSSTESTPLKRGELPSGHDGFLSFSWIRRNTNAQPVFGKTRSLVQ 60
M+VSS ST PR C S S G+ + L F +I S +
Sbjct: 1 MEVSSFSTVPRYCNSRSFVP------GDSKFTYGTNLLFLFI--------------SAFE 40
Query: 61 NKTSLKVLCSQQREIPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGK 120
N+ + V+C Q++++ VV+ CMDE+YD LA+RL+PT+A + N+K +VGLAGPPGAGK
Sbjct: 41 NERTPLVIC-QKKDVTVVDGSCMDEIYDKLAERLVPTAAAMFSPNLKRLVGLAGPPGAGK 99
Query: 121 STLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARR 180
ST+A EVVRR+NK+WPQKA+SFD++V PPDVA VLPMDGFHLY SQLDAMEDPKEAHARR
Sbjct: 100 STVANEVVRRVNKLWPQKAASFDAEVNPPDVAIVLPMDGFHLYRSQLDAMEDPKEAHARR 159
Query: 181 GAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLD 240
G VY PSFDHGVGDPVEDDI V LQHKVVIV+GNY+ L+
Sbjct: 160 G----------------------VYVPSFDHGVGDPVEDDIFVSLQHKVVIVEGNYILLE 197
Query: 241 GGVWKDVSSMFDEKWFIEVDLDTAMQRVLKRHISTGKPPDVAKWRIEYNDRPNAELIMKS 300
G WKD+S MFDEKWFI+V+LDTAMQRV RHISTGKPPDVAKWR++YNDRPNAELI+KS
Sbjct: 198 EGSWKDISDMFDEKWFIDVNLDTAMQRVENRHISTGKPPDVAKWRVDYNDRPNAELIIKS 257
Query: 301 KKNADLVIKSIDI 313
K NADL+I+S++I
Sbjct: 258 KTNADLLIRSMNI 270
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|326508064|dbj|BAJ86775.1| predicted protein [Hordeum vulgare subsp. vulgare] | Back alignment and taxonomy information |
|---|
Score = 361 bits (926), Expect = 3e-97, Method: Compositional matrix adjust.
Identities = 169/264 (64%), Positives = 207/264 (78%)
Query: 49 QPVFGKTRSLVQNKTSLKVLCSQQREIPVVEARCMDEVYDALAQRLLPTSALASNVNVKH 108
QP F + + K V C Q++ P +EA+ M+EVYDALA+ LL N++ K+
Sbjct: 56 QPAFHQPVTRATWKKKHNVTCYQRQGAPQIEAKSMEEVYDALAEHLLSALKSIDNLDSKY 115
Query: 109 IVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLD 168
IVGLAGPPGAGKST+A+EVVRR+NK W QK + S D+AT+LPMDGFHLY SQLD
Sbjct: 116 IVGLAGPPGAGKSTVASEVVRRVNKRWSQKHAKDGSPNSDEDIATMLPMDGFHLYRSQLD 175
Query: 169 AMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHK 228
AMEDPKEAHARRGAPWTFNP L L CL+ L+ +GSVYAPSFDHGVGDPVE+DI V QHK
Sbjct: 176 AMEDPKEAHARRGAPWTFNPSLFLKCLQILKEEGSVYAPSFDHGVGDPVENDIFVKPQHK 235
Query: 229 VVIVDGNYLFLDGGVWKDVSSMFDEKWFIEVDLDTAMQRVLKRHISTGKPPDVAKWRIEY 288
+VIV+GNYL L+ VW+++ +MFDEKWFI++D+D +MQRVL+RHI TGK PDVA WRI Y
Sbjct: 236 IVIVEGNYLLLEEDVWREIRNMFDEKWFIDIDIDVSMQRVLQRHIGTGKEPDVAAWRISY 295
Query: 289 NDRPNAELIMKSKKNADLVIKSID 312
NDRPNAELI++SK+ ADLVI+S+D
Sbjct: 296 NDRPNAELILESKRAADLVIRSVD 319
|
Source: Hordeum vulgare subsp. vulgare Species: Hordeum vulgare Genus: Hordeum Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 313 | ||||||
| TAIR|locus:2007544 | 301 | AT1G03030 [Arabidopsis thalian | 0.961 | 1.0 | 0.629 | 1.7e-100 | |
| UNIPROTKB|G4MQ63 | 236 | MGG_02303 "Phosphoribulokinase | 0.638 | 0.847 | 0.394 | 2e-31 | |
| ASPGD|ASPL0000074767 | 234 | AN4382 [Emericella nidulans (t | 0.632 | 0.846 | 0.356 | 6.9e-31 | |
| POMBASE|SPAC227.14 | 235 | SPAC227.14 "uridine kinase (pr | 0.610 | 0.812 | 0.352 | 6.2e-30 | |
| CGD|CAL0002107 | 226 | orf19.7061 [Candida albicans ( | 0.619 | 0.858 | 0.344 | 2.4e-28 | |
| ASPGD|ASPL0000094429 | 583 | AN11942 [Emericella nidulans ( | 0.466 | 0.250 | 0.341 | 1.4e-20 | |
| UNIPROTKB|P11664 | 237 | yggC "conserved protein with n | 0.488 | 0.645 | 0.329 | 2.2e-15 | |
| SGD|S000001903 | 353 | YFH7 "Putative kinase with sim | 0.287 | 0.254 | 0.288 | 5.5e-13 | |
| SGD|S000005295 | 501 | URK1 "Uridine/cytidine kinase" | 0.306 | 0.191 | 0.314 | 5.7e-06 | |
| CGD|CAL0002407 | 545 | URK1 [Candida albicans (taxid: | 0.255 | 0.146 | 0.344 | 0.00021 |
| TAIR|locus:2007544 AT1G03030 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 997 (356.0 bits), Expect = 1.7e-100, P = 1.7e-100
Identities = 197/313 (62%), Positives = 235/313 (75%)
Query: 1 MDVSSLSTTPRACLSSSSTESTPLKRGELPSGHDGFLSFSWIRRNTNAQPVFGKTRSLVQ 60
M+VSS ST PR C S S P EL S GF W + + P+ R +
Sbjct: 1 MEVSSFSTVPRYCNSRSFV---P----EL-SRFRGFKVHLW---DQSLVPLHFSIRKR-K 48
Query: 61 NKTSLKVLCSQQREIPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGK 120
N + CSQ++++ VV+ CMDE+YD LA+RL+PT+A + N+K +VGLAGPPGAGK
Sbjct: 49 NTPRYLISCSQKKDVTVVDGSCMDEIYDKLAERLVPTAAAMFSPNLKRLVGLAGPPGAGK 108
Query: 121 STLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARR 180
ST+A EVVRR+NK+WPQKA+SFD++V PPDVA VLPMDGFHLY SQLDAMEDPKEAHARR
Sbjct: 109 STVANEVVRRVNKLWPQKAASFDAEVNPPDVAIVLPMDGFHLYRSQLDAMEDPKEAHARR 168
Query: 181 GAPWTFXXXXXXXXXXXXXXQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLD 240
GAPWTF +GSVY PSFDHGVGDPVEDDI V LQHKVVIV+GNY+ L+
Sbjct: 169 GAPWTFDPALLLNCLKKLKNEGSVYVPSFDHGVGDPVEDDIFVSLQHKVVIVEGNYILLE 228
Query: 241 GGVWKDVSSMFDEKWFIEVDLDTAMQRVLKRHISTGKPPDVAKWRIEYNDRPNAELIMKS 300
G WKD+S MFDEKWFI+V+LDTAMQRV RHISTGKPPDVAKWR++YNDRPNAELI+KS
Sbjct: 229 EGSWKDISDMFDEKWFIDVNLDTAMQRVENRHISTGKPPDVAKWRVDYNDRPNAELIIKS 288
Query: 301 KKNADLVIKSIDI 313
K NADL+I+S++I
Sbjct: 289 KTNADLLIRSMNI 301
|
|
| UNIPROTKB|G4MQ63 MGG_02303 "Phosphoribulokinase/uridine kinase" [Magnaporthe oryzae 70-15 (taxid:242507)] | Back alignment and assigned GO terms |
|---|
Score = 345 (126.5 bits), Expect = 2.0e-31, P = 2.0e-31
Identities = 86/218 (39%), Positives = 118/218 (54%)
Query: 90 LAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPP 149
LA+++ LA + ++G+AG PGAGK+TLA VV + I + + D +
Sbjct: 9 LAKKVWARYKLAEPTK-RILIGIAGIPGAGKTTLARRVVDELKAIQLAEDGTADGEF--- 64
Query: 150 DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFXXXXXXXXXXXXX--------XQ 201
T +PMDG+HL +QL AM DP+ A RRGA +TF Q
Sbjct: 65 --VTDIPMDGYHLTRAQLAAMPDPEMAIHRRGAAFTFDGEGFLALLQKLSLPVEEDSGAQ 122
Query: 202 GSV--YAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEKWFIEV 259
G+V YAPSFDH V DPV D I + + ++VI++GNYL LD WK +S+ DE WF V
Sbjct: 123 GTVTIYAPSFDHAVKDPVADSIPISPKMRIVIIEGNYLALDREPWKSAASLLDEIWFANV 182
Query: 260 DLDTAMQRVLKRHISTGKPPD--VAKWRIEYNDRPNAE 295
D + A +R+ KRH+ G PD A+ RI D NA+
Sbjct: 183 DREVARERLAKRHVEAGIVPDEEAARERIRTTDFLNAD 220
|
|
| ASPGD|ASPL0000074767 AN4382 [Emericella nidulans (taxid:162425)] | Back alignment and assigned GO terms |
|---|
Score = 340 (124.7 bits), Expect = 6.9e-31, P = 6.9e-31
Identities = 76/213 (35%), Positives = 118/213 (55%)
Query: 105 NVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYL 164
N + ++ ++G PG+GK+ LA + RRIN +K + + + +A +PMDG+HL
Sbjct: 22 NARLLIAVSGIPGSGKTELAITMARRIN----EKHGAQNGDL----IAAAIPMDGYHLTR 73
Query: 165 SQLDAMEDPKEAHARRGAPWTFXXXXXXXXXXXXXXQ-----GSVYAPSFDHGVGDPVED 219
+QL M DP+ A ARRGA +TF +++APSFDH V DPV++
Sbjct: 74 AQLAQMPDPEYAAARRGAAFTFDGEKFLALVRALREPLTPKTQTLHAPSFDHAVKDPVDN 133
Query: 220 DILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEKWFIEVDLDTAMQRVLKRHISTGKPP 279
DI + +V+ +GNYL L+ W + + DE WF++VD DTA QR++KRH+ G
Sbjct: 134 DIPIAAARRVIFFEGNYLSLNKEPWSSAAKLMDELWFVDVDFDTARQRLVKRHVKAGIAK 193
Query: 280 DVA--KWRIEYNDRPNAELIMKSKKNADLVIKS 310
D A + R + ND N I+ + + +I+S
Sbjct: 194 DEADAEKRADENDLVNGREIVDCRLDVQEIIRS 226
|
|
| POMBASE|SPAC227.14 SPAC227.14 "uridine kinase (predicted)" [Schizosaccharomyces pombe (taxid:4896)] | Back alignment and assigned GO terms |
|---|
Score = 331 (121.6 bits), Expect = 6.2e-30, P = 6.2e-30
Identities = 73/207 (35%), Positives = 112/207 (54%)
Query: 109 IVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLD 168
++GLAG PG+GKSTL A + K W ++ S ++ ++PMDGFH L +LD
Sbjct: 31 LIGLAGGPGSGKSTLCAILA----KAWNERFGS--------EIVKIIPMDGFHYSLEELD 78
Query: 169 AMEDPKEAHARRGAPWTFXXXXXXXXXXXXX--XQGSVYAPSFDHGVGDPVEDDILVGLQ 226
++P++A A RGA WTF +YAPSFDH +GDPV DDI V +
Sbjct: 79 RFDNPEKARALRGAEWTFDADLFYSLVRLMKKITDRELYAPSFDHAIGDPVVDDICVEPK 138
Query: 227 HKVVIVDGNYLFLDGGVWKDVSSMFDEKWFIEVDLDTAMQRVLKRHISTG--KPPDVAKW 284
++++I +GNYL L+ W D ++D K ++ V+ A RV RH+ +G + A
Sbjct: 139 NRILIFEGNYLLLNKPPWSDACKLYDIKAYLPVEHSVARARVAHRHLVSGLCATEEEAIE 198
Query: 285 RIEYNDRPNAELIMKSKKNADLVIKSI 311
R + ND N + K+ D+V++ +
Sbjct: 199 RTDRNDMINLTFVEKNMVTPDIVLQQL 225
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| CGD|CAL0002107 orf19.7061 [Candida albicans (taxid:5476)] | Back alignment and assigned GO terms |
|---|
Score = 316 (116.3 bits), Expect = 2.4e-28, P = 2.4e-28
Identities = 73/212 (34%), Positives = 115/212 (54%)
Query: 102 SNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFH 161
S+ ++++ LAG PG+GK+T A + +R+ S+F V VL DGFH
Sbjct: 29 SDSQPRYLISLAGVPGSGKTTFANAIAKRL--------STFAKVV-------VLSQDGFH 73
Query: 162 LYLSQLDAMEDPKEAHARRGAPWTFXXXXXXXXXXXXXXQG-SVYAPSFDHGVGDPVEDD 220
LY S+L M DPKEA RRGAP+TF + ++ APSFDH + DP+EDD
Sbjct: 74 LYRSELTLMADPKEAFRRRGAPFTFNAQAFVNLISKLKDRSQTIKAPSFDHKLKDPIEDD 133
Query: 221 ILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEKWFIEVDLDTAMQRVLKRHISTGKPPD 280
I++ ++I++GNY+ L W ++ + D+ WFI+ + +R++KRH++ G +
Sbjct: 134 IVIHGNVDIIIIEGNYVSLRDKYWDEIENFVDDTWFIKTPENLVRERIIKRHLNAGIAAN 193
Query: 281 V--AKWRIEYNDRPNAELIMKSKKNADLVIKS 310
A R + +D NA I + K ++I S
Sbjct: 194 EKEAAERADGSDMQNAHYIDGNSKPTKVLILS 225
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| ASPGD|ASPL0000094429 AN11942 [Emericella nidulans (taxid:162425)] | Back alignment and assigned GO terms |
|---|
Score = 251 (93.4 bits), Expect = 1.4e-20, P = 1.4e-20
Identities = 56/164 (34%), Positives = 86/164 (52%)
Query: 152 ATVLPMDGFHLYLSQLDAMEDPK--EAHARRGAPWTFX--------------XXXXXXXX 195
A VL MDGFHL S+LD + + + EA+ RRGAPWTF
Sbjct: 74 ALVLSMDGFHLPRSELDTLPNKERTEAYVRRGAPWTFDIPAFLEFMRTLRLWADSGSPSS 133
Query: 196 XXXXXQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEKW 255
G +YAP+F H DP+ + I++ +VI++GNYL LD W+D++ + D +
Sbjct: 134 SSEETAGVLYAPTFSHSTKDPIPNSIVIDHTTSIVIIEGNYLLLDKPQWRDIAPLVDYRV 193
Query: 256 FIEVDLDTAMQRVLKRHISTGKPPDVAKW--RIEYNDRPNAELI 297
F++VDL A +R+ +RH+ G + + R++ ND N L+
Sbjct: 194 FVDVDLAEARERLAQRHVEAGIEQTLEEGFLRVDRNDAINGALV 237
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| UNIPROTKB|P11664 yggC "conserved protein with nucleoside triphosphate hydrolase domain" [Escherichia coli K-12 (taxid:83333)] | Back alignment and assigned GO terms |
|---|
Score = 194 (73.4 bits), Expect = 2.2e-15, P = 2.2e-15
Identities = 53/161 (32%), Positives = 78/161 (48%)
Query: 149 PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFXXXXXXXXXXXXXXQGSVYAPS 208
P + T LPMDGFH Y S LDA + +GAP TF +G P
Sbjct: 74 PAIQT-LPMDGFHHYNSWLDA----HQLRPFKGAPETFDVAKLTENLRQVV-EGDCTWPQ 127
Query: 209 FDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEKWFIEVDLDTAMQRV 268
+D DPVED + V +VIV+GN+L LD W +++S D FI +R+
Sbjct: 128 YDRQKHDPVEDALHVTAP--LVIVEGNWLLLDDEKWLELASFCDFSIFIHAPAQILRERL 185
Query: 269 LKRHISTGKPPDVAKWRIEYNDRPNAELIMKSKKNADLVIK 309
+ R I+ G VA+ D PN E ++ + + A+L+++
Sbjct: 186 ISRKIAGGLTRQVAEAFYARTDGPNVERVLMNSRQANLIVE 226
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| SGD|S000001903 YFH7 "Putative kinase with similarity to the PRK/URK/PANK kinase subfamily" [Saccharomyces cerevisiae (taxid:4932)] | Back alignment and assigned GO terms |
|---|
Score = 123 (48.4 bits), Expect = 5.5e-13, Sum P(2) = 5.5e-13
Identities = 28/97 (28%), Positives = 51/97 (52%)
Query: 204 VYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDV-SSMFDEK----WFIE 258
++ P F+H + DP D + ++VI++G YL D WK + ++ D + I+
Sbjct: 237 IFVPGFNHALKDPTPDQYCISKFTRIVILEGLYLLYDQENWKKIYKTLADTGALLVYKID 296
Query: 259 VDLDTAMQRVLKRHISTGKPPDVAKWRIEY--NDRPN 293
+D + +RV KRH+ +G +A+ R ++ ND N
Sbjct: 297 IDYEATEERVAKRHLQSGLVTTIAEGREKFRSNDLLN 333
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| SGD|S000005295 URK1 "Uridine/cytidine kinase" [Saccharomyces cerevisiae (taxid:4932)] | Back alignment and assigned GO terms |
|---|
Score = 102 (41.0 bits), Expect = 5.7e-06, Sum P(2) = 5.7e-06
Identities = 34/108 (31%), Positives = 56/108 (51%)
Query: 208 SFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEKWFIEVDLDTAMQR 267
SF H P ++ ++ G VV+++G Y D + + + D K +++ DLD + R
Sbjct: 142 SFVHHNRVPDKNIVIYGAS--VVVIEGIYALYD----RRLLDLMDLKIYVDADLDVCLAR 195
Query: 268 VLKRHI-STGKPPD--VAKWRIEYNDRPNAELIMK-SKKNADLVIKSI 311
L R I S G+ D + +W E +PNA +K + KNAD +I S+
Sbjct: 196 RLSRDIVSRGRDLDGCIQQW--EKFVKPNAVKFVKPTMKNADAIIPSM 241
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| CGD|CAL0002407 URK1 [Candida albicans (taxid:5476)] | Back alignment and assigned GO terms |
|---|
Score = 86 (35.3 bits), Expect = 0.00021, Sum P(2) = 0.00021
Identities = 30/87 (34%), Positives = 46/87 (52%)
Query: 229 VVIVDGNYLFLDGGVWKDVSSMFDEKWFIEVDLDTAMQRVLKRHIS-TGKPPDVAKWRIE 287
V+IV+G Y D + + M D K +++ DLD + R L R I G+ A + E
Sbjct: 198 VIIVEGLYALHD----QQLLDMMDLKIYVDTDLDICLARRLTRDILYRGRDLGGAMQQWE 253
Query: 288 YNDRPNA-ELIMKSKKNADLVI-KSID 312
+PNA + I + +NADLVI + +D
Sbjct: 254 KFVKPNAVKFINPTVQNADLVIPRGLD 280
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 3rd Layer | 2.7.1 | 0.691 |
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
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 | GSVIVG00023843001 | SubName- Full=Chromosome chr7 scaffold_31, whole genome shotgun sequence; (312 aa) | |||||||||
(Vitis vinifera) | |||||||||||
Predicted Functional Partners: | |||||||||||
 | GSVIVG00014548001 | SubName- Full=Chromosome chr18 scaffold_1, whole genome shotgun sequence; (459 aa) | • | • | 0.415 | ||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 313 | |||
| PRK09270 | 229 | PRK09270, PRK09270, nucleoside triphosphate hydrol | 1e-56 | |
| COG1072 | 283 | COG1072, CoaA, Panthothenate kinase [Coenzyme meta | 6e-40 | |
| COG0572 | 218 | COG0572, Udk, Uridine kinase [Nucleotide transport | 1e-17 | |
| cd02023 | 198 | cd02023, UMPK, Uridine monophosphate kinase (UMPK, | 7e-15 | |
| TIGR00235 | 207 | TIGR00235, udk, uridine kinase | 8e-13 | |
| pfam00485 | 197 | pfam00485, PRK, Phosphoribulokinase / Uridine kina | 9e-10 | |
| PRK05480 | 209 | PRK05480, PRK05480, uridine/cytidine kinase; Provi | 2e-08 | |
| cd02024 | 187 | cd02024, NRK1, Nicotinamide riboside kinase (NRK) | 3e-07 | |
| PRK06696 | 223 | PRK06696, PRK06696, uridine kinase; Validated | 4e-07 | |
| cd02028 | 179 | cd02028, UMPK_like, Uridine monophosphate kinase_l | 1e-05 | |
| pfam13207 | 114 | pfam13207, AAA_17, AAA domain | 2e-05 | |
| COG4240 | 300 | COG4240, COG4240, Predicted kinase [General functi | 3e-05 | |
| cd02025 | 220 | cd02025, PanK, Pantothenate kinase (PanK) catalyze | 5e-05 | |
| COG1703 | 323 | COG1703, ArgK, Putative periplasmic protein kinase | 4e-04 | |
| cd02026 | 273 | cd02026, PRK, Phosphoribulokinase (PRK) is an enzy | 8e-04 | |
| smart00382 | 148 | smart00382, AAA, ATPases associated with a variety | 0.002 | |
| PLN02348 | 395 | PLN02348, PLN02348, phosphoribulokinase | 0.002 | |
| PRK03695 | 248 | PRK03695, PRK03695, vitamin B12-transporter ATPase | 0.003 | |
| pfam13238 | 128 | pfam13238, AAA_18, AAA domain | 0.004 |
| >gnl|CDD|236442 PRK09270, PRK09270, nucleoside triphosphate hydrolase domain-containing protein; Reviewed | Back alignment and domain information |
|---|
Score = 182 bits (464), Expect = 1e-56
Identities = 84/233 (36%), Positives = 127/233 (54%), Gaps = 19/233 (8%)
Query: 78 VEARCMDEVYDALAQRLLP-TSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWP 136
V+A+ DE +A+ + LL +AL + + IVG+AGPPGAGKSTLA + + +
Sbjct: 3 VQAQYRDEEIEAVHKPLLRRLAALQAEPQRRTIVGIAGPPGAGKSTLAEFLEALLQQ--- 59
Query: 137 QKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLK 196
A +PMDGFHL + LDA R+GAP TF+ L L+
Sbjct: 60 ----------DGELPAIQVPMDGFHLDNAVLDAHG----LRPRKGAPETFDVAGLAALLR 105
Query: 197 NLRNQ-GSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEKW 255
LR VY P FD + DPV D I+V ++VIV+GNYL LD W+ ++ +FD
Sbjct: 106 RLRAGDDEVYWPVFDRSLEDPVADAIVVPPTARLVIVEGNYLLLDEEPWRRLAGLFDFTI 165
Query: 256 FIEVDLDTAMQRVLKRHISTGKPPDVAKWRIEYNDRPNAELIMKSKKNADLVI 308
F++ + +R++ R ++ G P+ A+ + ND PNA L++++ + ADLV+
Sbjct: 166 FLDAPAEVLRERLVARKLAGGLSPEAAEAFVLRNDGPNARLVLETSRPADLVL 218
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Length = 229 |
| >gnl|CDD|223998 COG1072, CoaA, Panthothenate kinase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 140 bits (356), Expect = 6e-40
Identities = 58/211 (27%), Positives = 92/211 (43%), Gaps = 18/211 (8%)
Query: 100 LASNVN-VKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMD 158
L +N I+G+AG GKST A +++ + WP+ P V V MD
Sbjct: 74 LGTNNQQRPFIIGIAGSVAVGKSTTA-RILQALLSRWPES----------PKVDLV-TMD 121
Query: 159 GFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQGS-VYAPSFDHGVGDPV 217
GFH + LD AR+G P +++ LL L +++ V+AP + H + DPV
Sbjct: 122 GFHYPNAVLDERG----LMARKGFPESYDVAALLRFLSDVKAGKPDVFAPVYSHLIYDPV 177
Query: 218 EDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEKWFIEVDLDTAMQRVLKRHISTGK 277
D V Q ++IV+GN + DG W +S FD +++ D + +R ++R + G
Sbjct: 178 PDAFQVVPQPDILIVEGNNVLQDGEPWLFLSDFFDFSIYVDADEELLEERYIERFLKFGL 237
Query: 278 PPDVAKWRIEYNDRPNAELIMKSKKNADLVI 308
+N P +E A
Sbjct: 238 TAFEDPASYFHNYAPLSEREAIESARAIWDN 268
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Length = 283 |
| >gnl|CDD|223645 COG0572, Udk, Uridine kinase [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Score = 80.0 bits (198), Expect = 1e-17
Identities = 52/204 (25%), Positives = 88/204 (43%), Gaps = 30/204 (14%)
Query: 109 IVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLD 168
I+G+AG G+GK+T+A E+ ++ V+ +D ++ S L
Sbjct: 10 IIGIAGGSGSGKTTVAKELSEQLGVEKV----------------VVISLDDYYKDQSHLP 53
Query: 169 AMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHK 228
E P F+ LL+ LK+L+ V P +D+ + I V
Sbjct: 54 FEE---RNKINYDHPEAFDLDLLIEHLKDLKQGKPVDLPVYDYKTHTREPETIKVEPND- 109
Query: 229 VVIVDGNYLFLDGGVWKDVSSMFDEKWFIEVDLDTAMQRVLKRHI-STGKPPD--VAKWR 285
VVIV+G L D + + + D K F++ D D + R +KR + G+ + + ++
Sbjct: 110 VVIVEGILLLYD----ERLRDLMDLKIFVDTDADVRLIRRIKRDVQERGRDLESVIEQYV 165
Query: 286 IEYNDRPNAEL-IMKSKKNADLVI 308
RP E I +KK AD++I
Sbjct: 166 KTV--RPMYEQFIEPTKKYADIII 187
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Length = 218 |
| >gnl|CDD|238981 cd02023, UMPK, Uridine monophosphate kinase (UMPK, EC 2 | Back alignment and domain information |
|---|
Score = 71.4 bits (176), Expect = 7e-15
Identities = 49/210 (23%), Positives = 93/210 (44%), Gaps = 42/210 (20%)
Query: 109 IVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLD 168
I+G+AG G+GK+T+A E++ ++ ++ D ++ LS
Sbjct: 1 IIGIAGGSGSGKTTVAEEIIEQLGNPK----------------VVIISQDSYYKDLS--- 41
Query: 169 AMEDPKEA------HARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDIL 222
E+ +E H + F+ LL++ L++L+N SV P +D +++ +
Sbjct: 42 -HEELEERKNNNYDHP---DAFDFD--LLISHLQDLKNGKSVEIPVYDFKTHSRLKETVT 95
Query: 223 VGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEKWFIEVDLDTAMQRVLKRHISTGKPPDVA 282
V V+I++G D K++ + D K F++ D D + R ++R I +
Sbjct: 96 VY-PADVIILEGILALYD----KELRDLMDLKIFVDTDADVRLIRRIERDIVERGRDLES 150
Query: 283 KWRIE-YND--RPNAE-LIMKSKKNADLVI 308
I Y +P E I +K+ AD++I
Sbjct: 151 V--INQYLKFVKPMHEQFIEPTKRYADVII 178
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7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine. Length = 198 |
| >gnl|CDD|232890 TIGR00235, udk, uridine kinase | Back alignment and domain information |
|---|
Score = 65.9 bits (161), Expect = 8e-13
Identities = 49/204 (24%), Positives = 94/204 (46%), Gaps = 30/204 (14%)
Query: 109 IVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLD 168
I+G+ G G+GK+T+A ++ ++ K+ ++ D ++ S L
Sbjct: 8 IIGIGGGSGSGKTTVARKIYEQLGKLE----------------IVIISQDNYYKDQSHL- 50
Query: 169 AMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHK 228
M + K+ + P F+ LL LKNL+N + P +D+ ++ + +
Sbjct: 51 EMAERKKTNFDH--PDAFDNDLLYEHLKNLKNGSPIDVPVYDYVNHTRPKETVHIE-PKD 107
Query: 229 VVIVDGNYLFLDGGVWKDVSSMFDEKWFIEVDLDTAMQRVLKRHIST-GKPPD--VAKWR 285
VVI++G D + + + D K F++ LD + R ++R I+ G+ D + ++R
Sbjct: 108 VVILEGIMPLFD----ERLRDLMDLKIFVDTPLDIRLIRRIERDINERGRSLDSVIDQYR 163
Query: 286 IEYNDRPNAE-LIMKSKKNADLVI 308
RP E + +K+ ADL+I
Sbjct: 164 KTV--RPMYEQFVEPTKQYADLII 185
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Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below [Purines, pyrimidines, nucleosides, and nucleotides, Salvage of nucleosides and nucleotides]. Length = 207 |
| >gnl|CDD|201257 pfam00485, PRK, Phosphoribulokinase / Uridine kinase family | Back alignment and domain information |
|---|
Score = 57.0 bits (138), Expect = 9e-10
Identities = 47/212 (22%), Positives = 78/212 (36%), Gaps = 30/212 (14%)
Query: 109 IVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLD 168
I+G+ G GAGK+T V R I F + P D FH Y
Sbjct: 1 IIGVTGSSGAGKTT----VARTFVSI-------FGREGVPAAGIE---GDSFHRYDRFYM 46
Query: 169 --AMEDPKEAHARR---GAPWTFNPLLLLNCLKNLRNQGSVYAP--SFDHGVGDPVEDDI 221
ED K A +P + LL K L+ GS P + G DP ++
Sbjct: 47 DLHPEDRKRAGNNHYSFFSPEANDFDLLYEQFKELKEGGSGDKPIYNHVTGEADPTWPEL 106
Query: 222 LVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEKWFIEVDLDTAMQRVLKRHIST-GKPPD 280
+ G ++ +G L G + V+ + D K ++ D++ + ++R ++ G +
Sbjct: 107 IEG--ADILFYEG----LHGLYDERVAQLLDLKIGVDPDINLEWIQKIQRDMAERGHSLE 160
Query: 281 VAKWRIEYNDRPNAE-LIMKSKKNADLVIKSI 311
I +P+ I DL + +
Sbjct: 161 AVTDSILRR-KPDYVNYICPQFSYTDLNFQRV 191
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In Arabidopsis the region carries two binding domains, a phosphoribosylpyrophosphate-binding domain and, at the very C-terminus, a uracil-binding domain. Length = 197 |
| >gnl|CDD|235492 PRK05480, PRK05480, uridine/cytidine kinase; Provisional | Back alignment and domain information |
|---|
Score = 53.2 bits (129), Expect = 2e-08
Identities = 51/208 (24%), Positives = 95/208 (45%), Gaps = 36/208 (17%)
Query: 108 HIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQL 167
I+G+AG G+GK+T+A+ + + +A V+P D ++ S L
Sbjct: 7 IIIGIAGGSGSGKTTVASTIYEEL---------------GDESIA-VIPQDSYYKDQSHL 50
Query: 168 DAMEDPKEA---HARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVG 224
E+ + H P F+ LL+ LK L+ ++ P +D+ ++ I V
Sbjct: 51 S-FEERVKTNYDH-----PDAFDHDLLIEHLKALKAGKAIEIPVYDYTEHTRSKETIRVE 104
Query: 225 LQHKVVIVDGNYLFLDGGVWKDVSSMFDEKWFIEVDLDTAMQRVLKRHIST-GKPPD--V 281
V+I++G L D + + + D K F++ LD + R LKR ++ G+ + +
Sbjct: 105 -PKDVIILEGILLLED----ERLRDLMDIKIFVDTPLDIRLIRRLKRDVNERGRSLESVI 159
Query: 282 AKWRIEYNDRP-NAELIMKSKKNADLVI 308
++ RP + + I SK+ AD++I
Sbjct: 160 NQYLSTV--RPMHLQFIEPSKRYADIII 185
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Length = 209 |
| >gnl|CDD|238982 cd02024, NRK1, Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+) | Back alignment and domain information |
|---|
Score = 49.2 bits (118), Expect = 3e-07
Identities = 39/180 (21%), Positives = 68/180 (37%), Gaps = 54/180 (30%)
Query: 109 IVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSF----------DSQV-------KPPDV 151
IVG++G +GK+TLA + + +I P + + ++ K DV
Sbjct: 1 IVGISGVTNSGKTTLA----KLLQRILP---NCCVIHQDDFFKPEDEIPVDENGFKQWDV 53
Query: 152 ATVLPMDGFHLYLSQLDA-MEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFD 210
L M+ +S LD E K LR+ G+ P +
Sbjct: 54 LEALDMEAM---MSTLDYWRETGHFP-------------------KFLRSHGNENDPEKE 91
Query: 211 HGVGDPV---EDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEKWFIEVDLDTAMQR 267
+ + D+L ++IVDG L+ K + +FD ++F+ V +T +R
Sbjct: 92 FIEDAQIEETKADLLGAEDLHILIVDGFLLYNY----KPLVDLFDIRYFLRVPYETCKRR 147
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This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside. Length = 187 |
| >gnl|CDD|180660 PRK06696, PRK06696, uridine kinase; Validated | Back alignment and domain information |
|---|
Score = 49.6 bits (119), Expect = 4e-07
Identities = 53/220 (24%), Positives = 84/220 (38%), Gaps = 48/220 (21%)
Query: 110 VGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDA 169
V + G +GK+T A E+ I K + +P A++ D FH
Sbjct: 25 VAIDGITASGKTTFADELAEEIKK-----------RGRPVIRASI---DDFH-------- 62
Query: 170 MEDPKEAHARRG---APWTFN-----PLLLLNCLKNLRNQGS--VYAPSFDHGVGDPVED 219
+P+ RRG A + L L L G S D PV +
Sbjct: 63 --NPRVIRYRRGRESAEGYYEDAYDYTALRRLLLDPLGPNGDRQYRTASHDLKTDIPVHN 120
Query: 220 DILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEKWFIEVDLDTAMQRVLKRHIST-GKP 278
L+ + V+IVDG +L ++ ++D K F++ D + + +R KR G
Sbjct: 121 PPLLAAPNAVLIVDGTFLLRP-----ELRDLWDYKIFLDTDFEVSRRRGAKRDTEAFGSY 175
Query: 279 PDVAKWRIEYNDR--PNAELIMKS---KKNADLVIKSIDI 313
+ K Y R P +L + K+ AD+VI + D
Sbjct: 176 EEAEK---MYLARYHPAQKLYIAEANPKERADVVIDNSDP 212
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Length = 223 |
| >gnl|CDD|238986 cd02028, UMPK_like, Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2 | Back alignment and domain information |
|---|
Score = 44.6 bits (106), Expect = 1e-05
Identities = 38/130 (29%), Positives = 50/130 (38%), Gaps = 24/130 (18%)
Query: 109 IVGLAGPPGAGKSTLAAE--VVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQ 166
+VG+AGP G+GK+T A + R+N I P S D P DG + + S
Sbjct: 1 VVGIAGPSGSGKTTFAKKLSNQLRVNGIGP-VVISLDDYYVPRKTPRDE--DGNYDFESI 57
Query: 167 LDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQ 226
LD LL N L +L N V P +D G L
Sbjct: 58 LDL------------------DLLNKN-LHDLLNGKEVELPIYDFRTGKRRGYRKLKLPP 98
Query: 227 HKVVIVDGNY 236
VVI++G Y
Sbjct: 99 SGVVILEGIY 108
|
7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK). Length = 179 |
| >gnl|CDD|221983 pfam13207, AAA_17, AAA domain | Back alignment and domain information |
|---|
Score = 43.1 bits (101), Expect = 2e-05
Identities = 21/167 (12%), Positives = 46/167 (27%), Gaps = 53/167 (31%)
Query: 109 IVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLD 168
I+ + GPPG+GKSTLA ++ ++ V+ +D +
Sbjct: 1 IILITGPPGSGKSTLAKKLAEKLG-------------------IPVISLDDLLREEGLAE 41
Query: 169 AMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHK 228
+ + + ++IL L +
Sbjct: 42 LDDGELDDIDID----------------------------------LELLEEILDELAKQ 67
Query: 229 VVIVDGNYLFLDGGVWKDVSSMFDEKWFIEVDLDTAMQRVLKRHIST 275
++DG ++ + + ++R L+R
Sbjct: 68 EWVIDGVRESTLELRLEEADLVVFLDLPLPACRFRLLKRRLQRGRGE 114
|
Length = 114 |
| >gnl|CDD|226691 COG4240, COG4240, Predicted kinase [General function prediction only] | Back alignment and domain information |
|---|
Score = 44.5 bits (105), Expect = 3e-05
Identities = 35/115 (30%), Positives = 53/115 (46%), Gaps = 23/115 (20%)
Query: 109 IVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLD 168
IVG++GP G+GKSTL+A +VR + ++ ++ +D YL+ D
Sbjct: 52 IVGISGPQGSGKSTLSALIVRLLAAKGLERTATLS-------------LDDL--YLTHAD 96
Query: 169 AMEDPKEAHAR---RGAPWTFNPLLLLNCLKNLRNQGS-VYAPSFDH----GVGD 215
+ ++ + RG P T +P L LN L + G V P FD G GD
Sbjct: 97 RLRLARQVNPLLQTRGLPGTHDPTLGLNVLNAIARGGPTVPLPRFDKSAFAGAGD 151
|
Length = 300 |
| >gnl|CDD|238983 cd02025, PanK, Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway | Back alignment and domain information |
|---|
Score = 43.1 bits (102), Expect = 5e-05
Identities = 56/238 (23%), Positives = 93/238 (39%), Gaps = 67/238 (28%)
Query: 109 IVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLY----L 164
I+G+AG GKST A V++ + WP + ++ T DGF LY L
Sbjct: 1 IIGIAGSVAVGKSTT-ARVLQALLSRWPDHPNV--------ELITT---DGF-LYPNKEL 47
Query: 165 SQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQGS-VYAPSFDHGVGDPVEDDILV 223
+ M+ R+G P +++ LL LK++++ V P + H D + +
Sbjct: 48 IERGLMD-------RKGFPESYDMEALLKFLKDIKSGKKNVKIPVYSHLTYDVIPGEKQT 100
Query: 224 GLQHKVVIVDG-NYL------------FLDGGVWKDVSSMFDEKWFIEVDLDTAMQRVLK 270
Q ++I++G N L F D ++ D EKW+I+ R LK
Sbjct: 101 VDQPDILIIEGLNVLQTGQNPRLFVSDFFDFSIYVDADEDDIEKWYIK--------RFLK 152
Query: 271 ------------RHISTGKPPDVAK------WRIEYNDRPN-AELIMKSKKNADLVIK 309
H + A W+ N N E I+ ++ ADL+++
Sbjct: 153 LRETAFSDPDSYFHRYAKMSEEEAIAFAREVWK-NIN-LKNLRENILPTRNRADLILE 208
|
The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis. Length = 220 |
| >gnl|CDD|224617 COG1703, ArgK, Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 41.2 bits (97), Expect = 4e-04
Identities = 25/58 (43%), Positives = 32/58 (55%), Gaps = 4/58 (6%)
Query: 73 REIPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRR 130
R I +VE+R D ALA+ LL AL H++G+ G PGAGKSTL + R
Sbjct: 21 RAITLVESRRPDH--RALARELL--RALYPRTGNAHVIGITGVPGAGKSTLIEALGRE 74
|
Length = 323 |
| >gnl|CDD|238984 cd02026, PRK, Phosphoribulokinase (PRK) is an enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes | Back alignment and domain information |
|---|
Score = 40.0 bits (94), Expect = 8e-04
Identities = 51/224 (22%), Positives = 88/224 (39%), Gaps = 72/224 (32%)
Query: 109 IVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLY----- 163
I+G+AG G GKST +RR+ ++ D+ TV+ +D +H
Sbjct: 1 IIGVAGDSGCGKSTF----LRRLTSLF------------GSDLVTVICLDDYHSLDRKGR 44
Query: 164 -LSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVG--DPVEDD 220
+ + A+ DP+ + F+ L+ LK L+ ++ P ++H G DP E
Sbjct: 45 KETGITAL-DPRANN--------FD--LMYEQLKALKEGQAIEKPIYNHVTGLIDPPE-- 91
Query: 221 ILVGLQHKVVIVDGNYLFLDGGVWK--DVSSMFD------EKWFIEVD-------LDTAM 265
L+ +V+++G + D V + D S D W I+ D L+ +
Sbjct: 92 -LIKPTK-IVVIEGLHPLYDERVRELLDFSVYLDISDEVKFAWKIQRDMAERGHSLEDVL 149
Query: 266 QRVLKRHISTGKPPDVAKWRIEYNDRPNAELIMKSKKNADLVIK 309
+ R PD + I K+ AD+VI+
Sbjct: 150 ASIEARK------PDFEAY------------IDPQKQYADVVIQ 175
|
This enzyme catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis. Length = 273 |
| >gnl|CDD|214640 smart00382, AAA, ATPases associated with a variety of cellular activities | Back alignment and domain information |
|---|
Score = 37.7 bits (87), Expect = 0.002
Identities = 10/27 (37%), Positives = 17/27 (62%)
Query: 107 KHIVGLAGPPGAGKSTLAAEVVRRINK 133
++ + GPPG+GK+TLA + R +
Sbjct: 2 GEVILIVGPPGSGKTTLARALARELGP 28
|
AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment. Length = 148 |
| >gnl|CDD|215198 PLN02348, PLN02348, phosphoribulokinase | Back alignment and domain information |
|---|
Score = 39.4 bits (92), Expect = 0.002
Identities = 53/211 (25%), Positives = 90/211 (42%), Gaps = 29/211 (13%)
Query: 109 IVGLAGPPGAGKSTLAAEVVRRINKIW-----PQKASSFDSQVKPPDVATVLPMDGFHLY 163
++GLA G GKST +RR+ ++ P K + DS D TV+ +D +H
Sbjct: 51 VIGLAADSGCGKSTF----MRRLTSVFGGAAKPPKGGNPDSNTLISDTTTVICLDDYHS- 105
Query: 164 LSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDH--GVGDPVEDDI 221
LD KE P N L+ +K L+ +V P ++H G+ DP E
Sbjct: 106 ---LD-RTGRKEKGVTALDPRANNFDLMYEQVKALKEGKAVEKPIYNHVTGLLDPPE--- 158
Query: 222 LVGLQH--KVVIVDGNYLFLDGGVWKDVSSMFDEKWFIEVDLDTAMQRVLKRHIST-GKP 278
L K+++++G + D + V + D ++++ D ++R ++ G
Sbjct: 159 ---LIEPPKILVIEGLHPMYD----ERVRDLLDFSIYLDISDDVKFAWKIQRDMAERGHS 211
Query: 279 PDVAKWRIEYNDRPNAELIMKSKKNADLVIK 309
+ K IE I K+ AD+VI+
Sbjct: 212 LESIKASIEARKPDFDAYIDPQKQYADVVIE 242
|
Length = 395 |
| >gnl|CDD|235150 PRK03695, PRK03695, vitamin B12-transporter ATPase; Provisional | Back alignment and domain information |
|---|
Score = 38.4 bits (90), Expect = 0.003
Identities = 19/37 (51%), Positives = 22/37 (59%), Gaps = 3/37 (8%)
Query: 89 ALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAA 125
A++ RL P SA V I+ L GP GAGKSTL A
Sbjct: 7 AVSTRLGPLSAE---VRAGEILHLVGPNGAGKSTLLA 40
|
Length = 248 |
| >gnl|CDD|222000 pfam13238, AAA_18, AAA domain | Back alignment and domain information |
|---|
Score = 36.7 bits (85), Expect = 0.004
Identities = 29/178 (16%), Positives = 51/178 (28%), Gaps = 65/178 (36%)
Query: 110 VGLAGPPGAGKSTLAAEVVRR----INKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLS 165
+ + G PG+GK+TLA E+ R + + + + + D + L D
Sbjct: 1 ILITGTPGSGKTTLAKELAERLGDVLRDLAKENGLVLELDEEITDESKRLDED------- 53
Query: 166 QLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGL 225
+ LL+ L E I
Sbjct: 54 --KLAK-------------------LLDKL----------------------EKIIEELA 70
Query: 226 QHKVVIVDG---NYLFLDGGVWKDVSSMFDEKWFIEVDLDTAMQRVLKRHISTGKPPD 280
+ + VI+DG V + D + ++R+ KR S K +
Sbjct: 71 EGENVIIDGHLAELELERFKDLVFV--------VLRADPEELLERLKKRGYSEEKISE 120
|
Length = 128 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 313 | |||
| COG1126 | 240 | GlnQ ABC-type polar amino acid transport system, A | 100.0 | |
| COG1125 | 309 | OpuBA ABC-type proline/glycine betaine transport s | 100.0 | |
| COG3842 | 352 | PotA ABC-type spermidine/putrescine transport syst | 100.0 | |
| COG1116 | 248 | TauB ABC-type nitrate/sulfonate/bicarbonate transp | 100.0 | |
| COG3839 | 338 | MalK ABC-type sugar transport systems, ATPase comp | 100.0 | |
| COG1135 | 339 | AbcC ABC-type metal ion transport system, ATPase c | 100.0 | |
| COG3638 | 258 | ABC-type phosphate/phosphonate transport system, A | 100.0 | |
| COG1120 | 258 | FepC ABC-type cobalamin/Fe3+-siderophores transpor | 100.0 | |
| COG1127 | 263 | Ttg2A ABC-type transport system involved in resist | 100.0 | |
| COG2884 | 223 | FtsE Predicted ATPase involved in cell division [C | 100.0 | |
| COG1121 | 254 | ZnuC ABC-type Mn/Zn transport systems, ATPase comp | 100.0 | |
| COG1118 | 345 | CysA ABC-type sulfate/molybdate transport systems, | 100.0 | |
| COG1124 | 252 | DppF ABC-type dipeptide/oligopeptide/nickel transp | 100.0 | |
| COG1136 | 226 | SalX ABC-type antimicrobial peptide transport syst | 100.0 | |
| COG4175 | 386 | ProV ABC-type proline/glycine betaine transport sy | 100.0 | |
| COG1131 | 293 | CcmA ABC-type multidrug transport system, ATPase c | 100.0 | |
| COG1122 | 235 | CbiO ABC-type cobalt transport system, ATPase comp | 100.0 | |
| COG1117 | 253 | PstB ABC-type phosphate transport system, ATPase c | 100.0 | |
| COG4555 | 245 | NatA ABC-type Na+ transport system, ATPase compone | 100.0 | |
| PRK11432 | 351 | fbpC ferric transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR03265 | 353 | PhnT2 putative 2-aminoethylphosphonate ABC transpo | 100.0 | |
| PRK11650 | 356 | ugpC glycerol-3-phosphate transporter ATP-binding | 100.0 | |
| COG1137 | 243 | YhbG ABC-type (unclassified) transport system, ATP | 100.0 | |
| TIGR02314 | 343 | ABC_MetN D-methionine ABC transporter, ATP-binding | 100.0 | |
| PRK13537 | 306 | nodulation ABC transporter NodI; Provisional | 100.0 | |
| PRK09452 | 375 | potA putrescine/spermidine ABC transporter ATPase | 100.0 | |
| PRK11607 | 377 | potG putrescine transporter ATP-binding subunit; P | 100.0 | |
| PRK13536 | 340 | nodulation factor exporter subunit NodI; Provision | 100.0 | |
| COG0411 | 250 | LivG ABC-type branched-chain amino acid transport | 100.0 | |
| TIGR03258 | 362 | PhnT 2-aminoethylphosphonate ABC transport system, | 100.0 | |
| PRK11000 | 369 | maltose/maltodextrin transporter ATP-binding prote | 100.0 | |
| PRK11022 | 326 | dppD dipeptide transporter ATP-binding subunit; Pr | 100.0 | |
| COG0410 | 237 | LivF ABC-type branched-chain amino acid transport | 100.0 | |
| PRK10851 | 353 | sulfate/thiosulfate transporter subunit; Provision | 100.0 | |
| COG1123 | 539 | ATPase components of various ABC-type transport sy | 100.0 | |
| COG0444 | 316 | DppD ABC-type dipeptide/oligopeptide/nickel transp | 100.0 | |
| TIGR01288 | 303 | nodI ATP-binding ABC transporter family nodulation | 100.0 | |
| PRK11308 | 327 | dppF dipeptide transporter ATP-binding subunit; Pr | 100.0 | |
| COG4525 | 259 | TauB ABC-type taurine transport system, ATPase com | 100.0 | |
| PRK15079 | 331 | oligopeptide ABC transporter ATP-binding protein O | 100.0 | |
| PRK09536 | 402 | btuD corrinoid ABC transporter ATPase; Reviewed | 100.0 | |
| COG4598 | 256 | HisP ABC-type histidine transport system, ATPase c | 100.0 | |
| COG4181 | 228 | Predicted ABC-type transport system involved in ly | 100.0 | |
| cd03265 | 220 | ABC_DrrA DrrA is the ATP-binding protein component | 100.0 | |
| PRK11153 | 343 | metN DL-methionine transporter ATP-binding subunit | 100.0 | |
| COG4152 | 300 | ABC-type uncharacterized transport system, ATPase | 100.0 | |
| cd03261 | 235 | ABC_Org_Solvent_Resistant ABC (ATP-binding cassett | 100.0 | |
| PRK15093 | 330 | antimicrobial peptide ABC transporter ATP-binding | 100.0 | |
| PRK09473 | 330 | oppD oligopeptide transporter ATP-binding componen | 100.0 | |
| TIGR03522 | 301 | GldA_ABC_ATP gliding motility-associated ABC trans | 100.0 | |
| PRK13637 | 287 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| COG3840 | 231 | ThiQ ABC-type thiamine transport system, ATPase co | 100.0 | |
| PRK13651 | 305 | cobalt transporter ATP-binding subunit; Provisiona | 100.0 | |
| cd03263 | 220 | ABC_subfamily_A The ABCA subfamily mediates the tr | 100.0 | |
| cd03258 | 233 | ABC_MetN_methionine_transporter MetN (also known a | 100.0 | |
| TIGR01186 | 363 | proV glycine betaine/L-proline transport ATP bindi | 100.0 | |
| PRK11264 | 250 | putative amino-acid ABC transporter ATP-binding pr | 100.0 | |
| PRK13634 | 290 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| COG1123 | 539 | ATPase components of various ABC-type transport sy | 100.0 | |
| cd03296 | 239 | ABC_CysA_sulfate_importer Part of the ABC transpor | 100.0 | |
| PRK11629 | 233 | lolD lipoprotein transporter ATP-binding subunit; | 100.0 | |
| PRK11831 | 269 | putative ABC transporter ATP-binding protein YrbF; | 100.0 | |
| cd03259 | 213 | ABC_Carb_Solutes_like ABC Carbohydrate and Solute | 100.0 | |
| TIGR00960 | 216 | 3a0501s02 Type II (General) Secretory Pathway (IIS | 100.0 | |
| cd03260 | 227 | ABC_PstB_phosphate_transporter Phosphate uptake is | 100.0 | |
| TIGR03415 | 382 | ABC_choXWV_ATP choline ABC transporter, ATP-bindin | 100.0 | |
| PRK10070 | 400 | glycine betaine transporter ATP-binding subunit; P | 100.0 | |
| TIGR01188 | 302 | drrA daunorubicin resistance ABC transporter ATP-b | 100.0 | |
| PRK13641 | 287 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13643 | 288 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03218 | 232 | ABC_YhbG The ABC transporters belonging to the Yhb | 100.0 | |
| cd03256 | 241 | ABC_PhnC_transporter ABC-type phosphate/phosphonat | 100.0 | |
| cd03219 | 236 | ABC_Mj1267_LivG_branched The Mj1267/LivG ABC trans | 100.0 | |
| PRK10895 | 241 | lipopolysaccharide ABC transporter ATP-binding pro | 100.0 | |
| TIGR03864 | 236 | PQQ_ABC_ATP ABC transporter, ATP-binding subunit, | 100.0 | |
| PRK13647 | 274 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03301 | 213 | ABC_MalK_N The N-terminal ATPase domain of the mal | 100.0 | |
| cd03266 | 218 | ABC_NatA_sodium_exporter NatA is the ATPase compon | 100.0 | |
| PRK14247 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13650 | 279 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13652 | 277 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR02315 | 243 | ABC_phnC phosphonate ABC transporter, ATP-binding | 100.0 | |
| PRK13638 | 271 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03269 | 210 | ABC_putative_ATPase This subfamily is involved in | 100.0 | |
| cd03224 | 222 | ABC_TM1139_LivF_branched LivF (TM1139) is part of | 100.0 | |
| PRK09493 | 240 | glnQ glutamine ABC transporter ATP-binding protein | 100.0 | |
| cd03295 | 242 | ABC_OpuCA_Osmoprotection OpuCA is a the ATP bindin | 100.0 | |
| PRK13636 | 283 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13548 | 258 | hmuV hemin importer ATP-binding subunit; Provision | 100.0 | |
| PRK13644 | 274 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR03411 | 242 | urea_trans_UrtD urea ABC transporter, ATP-binding | 100.0 | |
| PRK11248 | 255 | tauB taurine transporter ATP-binding subunit; Prov | 100.0 | |
| TIGR00972 | 247 | 3a0107s01c2 phosphate ABC transporter, ATP-binding | 100.0 | |
| cd03264 | 211 | ABC_drug_resistance_like ABC-type multidrug transp | 100.0 | |
| PRK13646 | 286 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03268 | 208 | ABC_BcrA_bacitracin_resist The BcrA subfamily repr | 100.0 | |
| cd03255 | 218 | ABC_MJ0796_Lo1CDE_FtsE This family is comprised of | 100.0 | |
| PRK14267 | 253 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03235 | 213 | ABC_Metallic_Cations ABC component of the metal-ty | 100.0 | |
| PRK14273 | 254 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| COG4604 | 252 | CeuD ABC-type enterochelin transport system, ATPas | 100.0 | |
| TIGR02211 | 221 | LolD_lipo_ex lipoprotein releasing system, ATP-bin | 100.0 | |
| PRK13631 | 320 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14268 | 258 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK10908 | 222 | cell division protein FtsE; Provisional | 100.0 | |
| TIGR03410 | 230 | urea_trans_UrtE urea ABC transporter, ATP-binding | 100.0 | |
| cd03294 | 269 | ABC_Pro_Gly_Bertaine This family comprises the gly | 100.0 | |
| PRK11124 | 242 | artP arginine transporter ATP-binding subunit; Pro | 100.0 | |
| TIGR02673 | 214 | FtsE cell division ATP-binding protein FtsE. This | 100.0 | |
| PRK13635 | 279 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK10584 | 228 | putative ABC transporter ATP-binding protein YbbA; | 100.0 | |
| cd03226 | 205 | ABC_cobalt_CbiO_domain2 Domain II of the ABC compo | 100.0 | |
| PRK10619 | 257 | histidine/lysine/arginine/ornithine transporter su | 100.0 | |
| cd03293 | 220 | ABC_NrtD_SsuB_transporters NrtD and SsuB are the A | 100.0 | |
| COG4161 | 242 | ArtP ABC-type arginine transport system, ATPase co | 100.0 | |
| PRK11614 | 237 | livF leucine/isoleucine/valine transporter ATP-bin | 100.0 | |
| TIGR02769 | 265 | nickel_nikE nickel import ATP-binding protein NikE | 100.0 | |
| PRK14242 | 253 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK11701 | 258 | phnK phosphonate C-P lyase system protein PhnK; Pr | 100.0 | |
| PRK15112 | 267 | antimicrobial peptide ABC system ATP-binding prote | 100.0 | |
| cd03257 | 228 | ABC_NikE_OppD_transporters The ABC transporter sub | 100.0 | |
| PRK13639 | 275 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14250 | 241 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13633 | 280 | cobalt transporter ATP-binding subunit; Provisiona | 100.0 | |
| PRK14241 | 258 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK10261 | 623 | glutathione transporter ATP-binding protein; Provi | 100.0 | |
| PRK10744 | 260 | pstB phosphate transporter ATP-binding protein; Pr | 100.0 | |
| PRK14235 | 267 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK10261 | 623 | glutathione transporter ATP-binding protein; Provi | 100.0 | |
| PRK11231 | 255 | fecE iron-dicitrate transporter ATP-binding subuni | 100.0 | |
| PRK11247 | 257 | ssuB aliphatic sulfonates transport ATP-binding su | 100.0 | |
| PRK13649 | 280 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14274 | 259 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR03005 | 252 | ectoine_ehuA ectoine/hydroxyectoine ABC transporte | 100.0 | |
| PRK13632 | 271 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14270 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK10418 | 254 | nikD nickel transporter ATP-binding protein NikD; | 100.0 | |
| cd03225 | 211 | ABC_cobalt_CbiO_domain1 Domain I of the ABC compon | 100.0 | |
| COG4559 | 259 | ABC-type hemin transport system, ATPase component | 100.0 | |
| PRK11144 | 352 | modC molybdate transporter ATP-binding protein; Pr | 100.0 | |
| PRK11300 | 255 | livG leucine/isoleucine/valine transporter ATP-bin | 100.0 | |
| PRK14262 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13549 | 506 | xylose transporter ATP-binding subunit; Provisiona | 100.0 | |
| PRK10575 | 265 | iron-hydroxamate transporter ATP-binding subunit; | 100.0 | |
| PRK14269 | 246 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14239 | 252 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK13640 | 282 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK10762 | 501 | D-ribose transporter ATP binding protein; Provisio | 100.0 | |
| cd03262 | 213 | ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP- | 100.0 | |
| cd03292 | 214 | ABC_FtsE_transporter FtsE is a hydrophilic nucleot | 100.0 | |
| PRK10771 | 232 | thiQ thiamine transporter ATP-binding subunit; Pro | 100.0 | |
| PRK14254 | 285 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK10253 | 265 | iron-enterobactin transporter ATP-binding protein; | 100.0 | |
| PRK13648 | 269 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14240 | 250 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK14256 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK09984 | 262 | phosphonate/organophosphate ester transporter subu | 100.0 | |
| PRK13645 | 289 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK10419 | 268 | nikE nickel transporter ATP-binding protein NikE; | 100.0 | |
| PRK13642 | 277 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14237 | 267 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| TIGR02323 | 253 | CP_lyasePhnK phosphonate C-P lyase system protein | 100.0 | |
| TIGR03873 | 256 | F420-0_ABC_ATP proposed F420-0 ABC transporter, AT | 100.0 | |
| PRK14245 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14253 | 249 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK15439 | 510 | autoinducer 2 ABC transporter ATP-binding protein | 100.0 | |
| cd03298 | 211 | ABC_ThiQ_thiamine_transporter ABC-type thiamine tr | 100.0 | |
| TIGR02142 | 354 | modC_ABC molybdenum ABC transporter, ATP-binding p | 100.0 | |
| COG4172 | 534 | ABC-type uncharacterized transport system, duplica | 100.0 | |
| TIGR03740 | 223 | galliderm_ABC gallidermin-class lantibiotic protec | 100.0 | |
| PRK09700 | 510 | D-allose transporter ATP-binding protein; Provisio | 100.0 | |
| TIGR03608 | 206 | L_ocin_972_ABC putative bacteriocin export ABC tra | 100.0 | |
| PRK14272 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR01978 | 243 | sufC FeS assembly ATPase SufC. SufC is part of the | 100.0 | |
| PRK14248 | 268 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13538 | 204 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| PRK14251 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03300 | 232 | ABC_PotA_N PotA is an ABC-type transporter and the | 100.0 | |
| PRK14259 | 269 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK15134 | 529 | microcin C ABC transporter ATP-binding protein Yej | 100.0 | |
| PRK14275 | 286 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK15056 | 272 | manganese/iron transporter ATP-binding protein; Pr | 100.0 | |
| TIGR01277 | 213 | thiQ thiamine ABC transporter, ATP-binding protein | 100.0 | |
| COG4608 | 268 | AppF ABC-type oligopeptide transport system, ATPas | 100.0 | |
| COG1129 | 500 | MglA ABC-type sugar transport system, ATPase compo | 100.0 | |
| PRK13547 | 272 | hmuV hemin importer ATP-binding subunit; Provision | 100.0 | |
| PRK14271 | 276 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14261 | 253 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14249 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK10247 | 225 | putative ABC transporter ATP-binding protein YbbL; | 100.0 | |
| TIGR00968 | 237 | 3a0106s01 sulfate ABC transporter, ATP-binding pro | 100.0 | |
| cd03299 | 235 | ABC_ModC_like Archeal protein closely related to M | 100.0 | |
| PRK14236 | 272 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| TIGR03269 | 520 | met_CoM_red_A2 methyl coenzyme M reductase system, | 100.0 | |
| PRK14260 | 259 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14243 | 264 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK14238 | 271 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK14255 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR02324 | 224 | CP_lyasePhnL phosphonate C-P lyase system protein | 100.0 | |
| PRK15134 | 529 | microcin C ABC transporter ATP-binding protein Yej | 100.0 | |
| TIGR03269 | 520 | met_CoM_red_A2 methyl coenzyme M reductase system, | 100.0 | |
| PRK09544 | 251 | znuC high-affinity zinc transporter ATPase; Review | 100.0 | |
| PRK13539 | 207 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| cd03297 | 214 | ABC_ModC_molybdenum_transporter ModC is an ABC-typ | 100.0 | |
| PRK13543 | 214 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| PRK14246 | 257 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK11288 | 501 | araG L-arabinose transporter ATP-binding protein; | 100.0 | |
| cd03267 | 236 | ABC_NatA_like Similar in sequence to NatA, this is | 100.0 | |
| PRK14265 | 274 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR01166 | 190 | cbiO cobalt transport protein ATP-binding subunit. | 100.0 | |
| TIGR01257 | 2272 | rim_protein retinal-specific rim ABC transporter. | 100.0 | |
| PRK14266 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14252 | 265 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR02633 | 500 | xylG D-xylose ABC transporter, ATP-binding protein | 100.0 | |
| PRK13540 | 200 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| PRK14258 | 261 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13549 | 506 | xylose transporter ATP-binding subunit; Provisiona | 100.0 | |
| cd03252 | 237 | ABCC_Hemolysin The ABC-transporter hemolysin B is | 100.0 | |
| PRK14244 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| COG3845 | 501 | ABC-type uncharacterized transport systems, ATPase | 100.0 | |
| TIGR01189 | 198 | ccmA heme ABC exporter, ATP-binding protein CcmA. | 100.0 | |
| PRK11819 | 556 | putative ABC transporter ATP-binding protein; Revi | 100.0 | |
| PRK10982 | 491 | galactose/methyl galaxtoside transporter ATP-bindi | 100.0 | |
| PRK10938 | 490 | putative molybdenum transport ATP-binding protein | 100.0 | |
| PRK14257 | 329 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR02770 | 230 | nickel_nikD nickel import ATP-binding protein NikD | 100.0 | |
| TIGR02982 | 220 | heterocyst_DevA ABC exporter ATP-binding subunit, | 100.0 | |
| cd03231 | 201 | ABC_CcmA_heme_exporter CcmA, the ATP-binding compo | 100.0 | |
| COG2274 | 709 | SunT ABC-type bacteriocin/lantibiotic exporters, c | 100.0 | |
| PRK14263 | 261 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14264 | 305 | phosphate ABC transporter ATP-binding protein; Pro | 99.98 | |
| cd03251 | 234 | ABCC_MsbA MsbA is an essential ABC transporter, cl | 99.98 | |
| PRK15064 | 530 | ABC transporter ATP-binding protein; Provisional | 99.98 | |
| TIGR01257 | 2272 | rim_protein retinal-specific rim ABC transporter. | 99.98 | |
| PRK15064 | 530 | ABC transporter ATP-binding protein; Provisional | 99.98 | |
| CHL00131 | 252 | ycf16 sulfate ABC transporter protein; Validated | 99.98 | |
| COG1134 | 249 | TagH ABC-type polysaccharide/polyol phosphate tran | 99.98 | |
| COG4172 | 534 | ABC-type uncharacterized transport system, duplica | 99.98 | |
| TIGR01184 | 230 | ntrCD nitrate transport ATP-binding subunits C and | 99.98 | |
| cd03245 | 220 | ABCC_bacteriocin_exporters ABC-type bacteriocin ex | 99.98 | |
| cd03254 | 229 | ABCC_Glucan_exporter_like Glucan exporter ATP-bind | 99.98 | |
| cd03220 | 224 | ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transpo | 99.98 | |
| COG4148 | 352 | ModC ABC-type molybdate transport system, ATPase c | 99.98 | |
| TIGR03719 | 552 | ABC_ABC_ChvD ATP-binding cassette protein, ChvD fa | 99.97 | |
| PRK13541 | 195 | cytochrome c biogenesis protein CcmA; Provisional | 99.97 | |
| KOG0058 | 716 | consensus Peptide exporter, ABC superfamily [Intra | 99.97 | |
| cd03234 | 226 | ABCG_White The White subfamily represents ABC tran | 99.97 | |
| PRK09700 | 510 | D-allose transporter ATP-binding protein; Provisio | 99.97 | |
| COG4674 | 249 | Uncharacterized ABC-type transport system, ATPase | 99.97 | |
| cd03289 | 275 | ABCC_CFTR2 The CFTR subfamily domain 2. The cystic | 99.97 | |
| cd03369 | 207 | ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-ty | 99.97 | |
| cd03244 | 221 | ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. | 99.97 | |
| TIGR03797 | 686 | NHPM_micro_ABC2 NHPM bacteriocin system ABC transp | 99.97 | |
| PRK13546 | 264 | teichoic acids export protein ATP-binding subunit; | 99.97 | |
| cd03249 | 238 | ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) | 99.97 | |
| TIGR02633 | 500 | xylG D-xylose ABC transporter, ATP-binding protein | 99.97 | |
| PRK03695 | 248 | vitamin B12-transporter ATPase; Provisional | 99.97 | |
| PRK09580 | 248 | sufC cysteine desulfurase ATPase component; Review | 99.97 | |
| PRK11176 | 582 | lipid transporter ATP-binding/permease protein; Pr | 99.97 | |
| TIGR03796 | 710 | NHPM_micro_ABC1 NHPM bacteriocin system ABC transp | 99.97 | |
| cd03247 | 178 | ABCC_cytochrome_bd The CYD subfamily implicated in | 99.97 | |
| PRK13545 | 549 | tagH teichoic acids export protein ATP-binding sub | 99.97 | |
| cd03213 | 194 | ABCG_EPDR ABCG transporters are involved in eye pi | 99.97 | |
| cd03248 | 226 | ABCC_TAP TAP, the Transporter Associated with Anti | 99.97 | |
| PRK11174 | 588 | cysteine/glutathione ABC transporter membrane/ATP- | 99.97 | |
| TIGR03719 | 552 | ABC_ABC_ChvD ATP-binding cassette protein, ChvD fa | 99.97 | |
| cd03253 | 236 | ABCC_ATM1_transporter ATM1 is an ABC transporter t | 99.97 | |
| COG4619 | 223 | ABC-type uncharacterized transport system, ATPase | 99.97 | |
| cd03233 | 202 | ABC_PDR_domain1 The pleiotropic drug resistance (P | 99.97 | |
| COG4167 | 267 | SapF ABC-type antimicrobial peptide transport syst | 99.97 | |
| PRK11819 | 556 | putative ABC transporter ATP-binding protein; Revi | 99.97 | |
| cd03232 | 192 | ABC_PDR_domain2 The pleiotropic drug resistance-li | 99.97 | |
| COG4988 | 559 | CydD ABC-type transport system involved in cytochr | 99.97 | |
| cd03230 | 173 | ABC_DR_subfamily_A This family of ATP-binding prot | 99.97 | |
| KOG0055 | 1228 | consensus Multidrug/pheromone exporter, ABC superf | 99.97 | |
| PRK10762 | 501 | D-ribose transporter ATP binding protein; Provisio | 99.97 | |
| cd03215 | 182 | ABC_Carb_Monos_II This family represents domain II | 99.97 | |
| cd03223 | 166 | ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cass | 99.97 | |
| PRK10790 | 592 | putative multidrug transporter membrane\ATP-bindin | 99.97 | |
| cd03229 | 178 | ABC_Class3 This class is comprised of all BPD (Bin | 99.97 | |
| TIGR00958 | 711 | 3a01208 Conjugate Transporter-2 (CT2) Family prote | 99.97 | |
| PLN03211 | 659 | ABC transporter G-25; Provisional | 99.97 | |
| TIGR01193 | 708 | bacteriocin_ABC ABC-type bacteriocin transporter. | 99.97 | |
| cd03246 | 173 | ABCC_Protease_Secretion This family represents the | 99.97 | |
| PRK11288 | 501 | araG L-arabinose transporter ATP-binding protein; | 99.97 | |
| COG4586 | 325 | ABC-type uncharacterized transport system, ATPase | 99.97 | |
| TIGR03375 | 694 | type_I_sec_LssB type I secretion system ATPase, Ls | 99.97 | |
| cd03288 | 257 | ABCC_SUR2 The SUR domain 2. The sulfonylurea recep | 99.97 | |
| cd03217 | 200 | ABC_FeS_Assembly ABC-type transport system involve | 99.97 | |
| PRK10938 | 490 | putative molybdenum transport ATP-binding protein | 99.97 | |
| PRK11160 | 574 | cysteine/glutathione ABC transporter membrane/ATP- | 99.97 | |
| PRK10636 | 638 | putative ABC transporter ATP-binding protein; Prov | 99.97 | |
| cd03250 | 204 | ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. | 99.97 | |
| PRK11147 | 635 | ABC transporter ATPase component; Reviewed | 99.97 | |
| PRK13657 | 588 | cyclic beta-1,2-glucan ABC transporter; Provisiona | 99.97 | |
| TIGR03771 | 223 | anch_rpt_ABC anchored repeat-type ABC transporter, | 99.97 | |
| KOG0057 | 591 | consensus Mitochondrial Fe/S cluster exporter, ABC | 99.97 | |
| cd03228 | 171 | ABCC_MRP_Like The MRP (Mutidrug Resistance Protein | 99.97 | |
| PRK15439 | 510 | autoinducer 2 ABC transporter ATP-binding protein | 99.97 | |
| TIGR02203 | 571 | MsbA_lipidA lipid A export permease/ATP-binding pr | 99.97 | |
| PRK10535 | 648 | macrolide transporter ATP-binding /permease protei | 99.97 | |
| TIGR02868 | 529 | CydC thiol reductant ABC exporter, CydC subunit. T | 99.97 | |
| COG1132 | 567 | MdlB ABC-type multidrug transport system, ATPase a | 99.97 | |
| cd03214 | 180 | ABC_Iron-Siderophores_B12_Hemin ABC transporters, | 99.97 | |
| COG4987 | 573 | CydC ABC-type transport system involved in cytochr | 99.97 | |
| COG1119 | 257 | ModF ABC-type molybdenum transport system, ATPase | 99.97 | |
| PRK10982 | 491 | galactose/methyl galaxtoside transporter ATP-bindi | 99.97 | |
| COG1101 | 263 | PhnK ABC-type uncharacterized transport system, AT | 99.97 | |
| PRK10636 | 638 | putative ABC transporter ATP-binding protein; Prov | 99.97 | |
| PRK13409 | 590 | putative ATPase RIL; Provisional | 99.97 | |
| TIGR02204 | 576 | MsbA_rel ABC transporter, permease/ATP-binding pro | 99.97 | |
| PRK11147 | 635 | ABC transporter ATPase component; Reviewed | 99.96 | |
| COG4107 | 258 | PhnK ABC-type phosphonate transport system, ATPase | 99.96 | |
| cd03290 | 218 | ABCC_SUR1_N The SUR domain 1. The sulfonylurea rec | 99.96 | |
| cd03216 | 163 | ABC_Carb_Monos_I This family represents the domain | 99.96 | |
| TIGR01842 | 544 | type_I_sec_PrtD type I secretion system ABC transp | 99.96 | |
| TIGR01846 | 694 | type_I_sec_HlyB type I secretion system ABC transp | 99.96 | |
| TIGR01192 | 585 | chvA glucan exporter ATP-binding protein. This mod | 99.96 | |
| PRK10789 | 569 | putative multidrug transporter membrane\ATP-bindin | 99.96 | |
| PLN03073 | 718 | ABC transporter F family; Provisional | 99.96 | |
| cd03291 | 282 | ABCC_CFTR1 The CFTR subfamily domain 1. The cystic | 99.96 | |
| PRK15177 | 213 | Vi polysaccharide export ATP-binding protein VexC; | 99.96 | |
| PLN03130 | 1622 | ABC transporter C family member; Provisional | 99.96 | |
| PLN03232 | 1495 | ABC transporter C family member; Provisional | 99.96 | |
| cd03237 | 246 | ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 o | 99.96 | |
| COG4136 | 213 | ABC-type uncharacterized transport system, ATPase | 99.96 | |
| TIGR01187 | 325 | potA spermidine/putrescine ABC transporter ATP-bin | 99.96 | |
| TIGR02857 | 529 | CydD thiol reductant ABC exporter, CydD subunit. U | 99.96 | |
| COG0396 | 251 | sufC Cysteine desulfurase activator ATPase [Posttr | 99.96 | |
| TIGR00956 | 1394 | 3a01205 Pleiotropic Drug Resistance (PDR) Family p | 99.96 | |
| cd03221 | 144 | ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is | 99.96 | |
| PRK10522 | 547 | multidrug transporter membrane component/ATP-bindi | 99.96 | |
| PTZ00243 | 1560 | ABC transporter; Provisional | 99.96 | |
| TIGR00957 | 1522 | MRP_assoc_pro multi drug resistance-associated pro | 99.96 | |
| PTZ00265 | 1466 | multidrug resistance protein (mdr1); Provisional | 99.96 | |
| KOG0055 | 1228 | consensus Multidrug/pheromone exporter, ABC superf | 99.96 | |
| cd03236 | 255 | ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 o | 99.95 | |
| TIGR00955 | 617 | 3a01204 The Eye Pigment Precursor Transporter (EPP | 99.95 | |
| PTZ00265 | 1466 | multidrug resistance protein (mdr1); Provisional | 99.95 | |
| TIGR00954 | 659 | 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FA | 99.95 | |
| TIGR01194 | 555 | cyc_pep_trnsptr cyclic peptide transporter. This m | 99.95 | |
| COG4133 | 209 | CcmA ABC-type transport system involved in cytochr | 99.95 | |
| COG0488 | 530 | Uup ATPase components of ABC transporters with dup | 99.95 | |
| KOG0056 | 790 | consensus Heavy metal exporter HMT1, ABC superfami | 99.95 | |
| KOG0059 | 885 | consensus Lipid exporter ABCA1 and related protein | 99.95 | |
| TIGR01271 | 1490 | CFTR_protein cystic fibrosis transmembrane conduct | 99.95 | |
| cd03222 | 177 | ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibi | 99.95 | |
| COG4618 | 580 | ArpD ABC-type protease/lipase transport system, AT | 99.95 | |
| COG4778 | 235 | PhnL ABC-type phosphonate transport system, ATPase | 99.94 | |
| PLN03140 | 1470 | ABC transporter G family member; Provisional | 99.94 | |
| PLN03130 | 1622 | ABC transporter C family member; Provisional | 99.94 | |
| PLN03140 | 1470 | ABC transporter G family member; Provisional | 99.94 | |
| TIGR00956 | 1394 | 3a01205 Pleiotropic Drug Resistance (PDR) Family p | 99.94 | |
| TIGR00957 | 1522 | MRP_assoc_pro multi drug resistance-associated pro | 99.94 | |
| PRK13409 | 590 | putative ATPase RIL; Provisional | 99.94 | |
| PLN03073 | 718 | ABC transporter F family; Provisional | 99.94 | |
| PLN03232 | 1495 | ABC transporter C family member; Provisional | 99.94 | |
| cd03238 | 176 | ABC_UvrA The excision repair protein UvrA; Nucleot | 99.94 | |
| cd00267 | 157 | ABC_ATPase ABC (ATP-binding cassette) transporter | 99.93 | |
| COG0488 | 530 | Uup ATPase components of ABC transporters with dup | 99.93 | |
| TIGR01271 | 1490 | CFTR_protein cystic fibrosis transmembrane conduct | 99.93 | |
| KOG0061 | 613 | consensus Transporter, ABC superfamily (Breast can | 99.92 | |
| PF00005 | 137 | ABC_tran: ABC transporter This structure is on hol | 99.92 | |
| PTZ00243 | 1560 | ABC transporter; Provisional | 99.91 | |
| COG5265 | 497 | ATM1 ABC-type transport system involved in Fe-S cl | 99.91 | |
| KOG0054 | 1381 | consensus Multidrug resistance-associated protein/ | 99.91 | |
| cd03270 | 226 | ABC_UvrA_I The excision repair protein UvrA domain | 99.91 | |
| KOG0054 | 1381 | consensus Multidrug resistance-associated protein/ | 99.9 | |
| COG4138 | 248 | BtuD ABC-type cobalamin transport system, ATPase c | 99.89 | |
| cd03278 | 197 | ABC_SMC_barmotin Barmotin is a tight junction-asso | 99.88 | |
| COG4615 | 546 | PvdE ABC-type siderophore export system, fused ATP | 99.86 | |
| KOG0927 | 614 | consensus Predicted transporter (ABC superfamily) | 99.86 | |
| KOG2702 | 323 | consensus Predicted panthothenate kinase/uridine k | 99.85 | |
| COG4170 | 330 | SapD ABC-type antimicrobial peptide transport syst | 99.85 | |
| cd03273 | 251 | ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC protein | 99.84 | |
| cd03271 | 261 | ABC_UvrA_II The excision repair protein UvrA domai | 99.83 | |
| cd03272 | 243 | ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC protein | 99.82 | |
| cd02025 | 220 | PanK Pantothenate kinase (PanK) catalyzes the phos | 99.81 | |
| COG1245 | 591 | Predicted ATPase, RNase L inhibitor (RLI) homolog | 99.81 | |
| KOG0065 | 1391 | consensus Pleiotropic drug resistance proteins (PD | 99.8 | |
| COG1129 | 500 | MglA ABC-type sugar transport system, ATPase compo | 99.8 | |
| cd03279 | 213 | ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complex | 99.8 | |
| COG4178 | 604 | ABC-type uncharacterized transport system, permeas | 99.8 | |
| cd03274 | 212 | ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC protein | 99.8 | |
| KOG0066 | 807 | consensus eIF2-interacting protein ABC50 (ABC supe | 99.79 | |
| TIGR00554 | 290 | panK_bact pantothenate kinase, bacterial type. Sho | 99.77 | |
| PTZ00301 | 210 | uridine kinase; Provisional | 99.77 | |
| KOG0927 | 614 | consensus Predicted transporter (ABC superfamily) | 99.77 | |
| KOG0062 | 582 | consensus ATPase component of ABC transporters wit | 99.76 | |
| PRK09270 | 229 | nucleoside triphosphate hydrolase domain-containin | 99.76 | |
| PRK00349 | 943 | uvrA excinuclease ABC subunit A; Reviewed | 99.75 | |
| COG0572 | 218 | Udk Uridine kinase [Nucleotide transport and metab | 99.75 | |
| COG3845 | 501 | ABC-type uncharacterized transport systems, ATPase | 99.75 | |
| cd03240 | 204 | ABC_Rad50 The catalytic domains of Rad50 are simil | 99.75 | |
| KOG0060 | 659 | consensus Long-chain acyl-CoA transporter, ABC sup | 99.73 | |
| cd02023 | 198 | UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1. | 99.73 | |
| PRK00635 | 1809 | excinuclease ABC subunit A; Provisional | 99.72 | |
| cd03276 | 198 | ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC protein | 99.72 | |
| PF00485 | 194 | PRK: Phosphoribulokinase / Uridine kinase family; | 99.71 | |
| KOG2355 | 291 | consensus Predicted ABC-type transport, ATPase com | 99.71 | |
| TIGR00235 | 207 | udk uridine kinase. Model contains a number of lon | 99.71 | |
| cd03275 | 247 | ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC protein | 99.7 | |
| TIGR00630 | 924 | uvra excinuclease ABC, A subunit. This family is b | 99.7 | |
| PRK05439 | 311 | pantothenate kinase; Provisional | 99.69 | |
| KOG0062 | 582 | consensus ATPase component of ABC transporters wit | 99.68 | |
| PRK05480 | 209 | uridine/cytidine kinase; Provisional | 99.68 | |
| PLN02318 | 656 | phosphoribulokinase/uridine kinase | 99.67 | |
| KOG0064 | 728 | consensus Peroxisomal long-chain acyl-CoA transpor | 99.66 | |
| COG2401 | 593 | ABC-type ATPase fused to a predicted acetyltransfe | 99.63 | |
| KOG0065 | 1391 | consensus Pleiotropic drug resistance proteins (PD | 99.61 | |
| COG1072 | 283 | CoaA Panthothenate kinase [Coenzyme metabolism] | 99.59 | |
| PLN02348 | 395 | phosphoribulokinase | 99.57 | |
| COG1245 | 591 | Predicted ATPase, RNase L inhibitor (RLI) homolog | 99.56 | |
| cd02029 | 277 | PRK_like Phosphoribulokinase-like (PRK-like) is a | 99.56 | |
| cd03283 | 199 | ABC_MutS-like MutS-like homolog in eukaryotes. The | 99.54 | |
| cd02026 | 273 | PRK Phosphoribulokinase (PRK) is an enzyme involve | 99.53 | |
| PRK07429 | 327 | phosphoribulokinase; Provisional | 99.48 | |
| PRK00635 | 1809 | excinuclease ABC subunit A; Provisional | 99.48 | |
| cd03280 | 200 | ABC_MutS2 MutS2 homologs in bacteria and eukaryote | 99.46 | |
| COG0178 | 935 | UvrA Excinuclease ATPase subunit [DNA replication, | 99.46 | |
| KOG0066 | 807 | consensus eIF2-interacting protein ABC50 (ABC supe | 99.46 | |
| cd02028 | 179 | UMPK_like Uridine monophosphate kinase_like (UMPK_ | 99.45 | |
| PRK15453 | 290 | phosphoribulokinase; Provisional | 99.44 | |
| cd03282 | 204 | ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS | 99.4 | |
| cd03277 | 213 | ABC_SMC5_euk Eukaryotic SMC5 proteins; SMC protein | 99.4 | |
| cd03227 | 162 | ABC_Class2 ABC-type Class 2 contains systems invol | 99.35 | |
| cd00820 | 107 | PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPC | 99.35 | |
| cd03239 | 178 | ABC_SMC_head The structural maintenance of chromos | 99.34 | |
| KOG0063 | 592 | consensus RNAse L inhibitor, ABC superfamily [RNA | 99.32 | |
| cd03243 | 202 | ABC_MutS_homologs The MutS protein initiates DNA m | 99.3 | |
| cd03285 | 222 | ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS | 99.28 | |
| cd02024 | 187 | NRK1 Nicotinamide riboside kinase (NRK) is an enzy | 99.22 | |
| PRK06696 | 223 | uridine kinase; Validated | 99.2 | |
| cd03241 | 276 | ABC_RecN RecN ATPase involved in DNA repair; ABC ( | 99.19 | |
| cd03281 | 213 | ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS | 99.14 | |
| TIGR02858 | 270 | spore_III_AA stage III sporulation protein AA. Mem | 99.06 | |
| PLN02796 | 347 | D-glycerate 3-kinase | 99.05 | |
| TIGR03238 | 504 | dnd_assoc_3 dnd system-associated protein 3. cereu | 99.05 | |
| PRK07667 | 193 | uridine kinase; Provisional | 99.05 | |
| cd03284 | 216 | ABC_MutS1 MutS1 homolog in eukaryotes. The MutS pr | 99.03 | |
| cd03242 | 270 | ABC_RecF RecF is a recombinational DNA repair ATPa | 99.03 | |
| cd03287 | 222 | ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS | 99.02 | |
| PRK06995 | 484 | flhF flagellar biosynthesis regulator FlhF; Valida | 98.99 | |
| TIGR01069 | 771 | mutS2 MutS2 family protein. Function of MutS2 is u | 98.97 | |
| smart00534 | 185 | MUTSac ATPase domain of DNA mismatch repair MUTS f | 98.94 | |
| cd01128 | 249 | rho_factor Transcription termination factor rho is | 98.9 | |
| cd01130 | 186 | VirB11-like_ATPase Type IV secretory pathway compo | 98.9 | |
| PF02463 | 220 | SMC_N: RecF/RecN/SMC N terminal domain; InterPro: | 98.86 | |
| TIGR02788 | 308 | VirB11 P-type DNA transfer ATPase VirB11. The VirB | 98.85 | |
| KOG0063 | 592 | consensus RNAse L inhibitor, ABC superfamily [RNA | 98.85 | |
| PLN03046 | 460 | D-glycerate 3-kinase; Provisional | 98.84 | |
| PRK06002 | 450 | fliI flagellum-specific ATP synthase; Validated | 98.84 | |
| PRK00349 | 943 | uvrA excinuclease ABC subunit A; Reviewed | 98.82 | |
| PRK08233 | 182 | hypothetical protein; Provisional | 98.78 | |
| cd03286 | 218 | ABC_MSH6_euk MutS6 homolog in eukaryotes. The MutS | 98.73 | |
| PRK06547 | 172 | hypothetical protein; Provisional | 98.72 | |
| PRK07721 | 438 | fliI flagellum-specific ATP synthase; Validated | 98.72 | |
| PRK00064 | 361 | recF recombination protein F; Reviewed | 98.7 | |
| TIGR00630 | 924 | uvra excinuclease ABC, A subunit. This family is b | 98.68 | |
| PRK00409 | 782 | recombination and DNA strand exchange inhibitor pr | 98.67 | |
| PRK08533 | 230 | flagellar accessory protein FlaH; Reviewed | 98.66 | |
| PRK07196 | 434 | fliI flagellum-specific ATP synthase; Validated | 98.65 | |
| COG4240 | 300 | Predicted kinase [General function prediction only | 98.64 | |
| PRK14721 | 420 | flhF flagellar biosynthesis regulator FlhF; Provis | 98.63 | |
| PTZ00132 | 215 | GTP-binding nuclear protein Ran; Provisional | 98.59 | |
| PRK06315 | 442 | type III secretion system ATPase; Provisional | 98.58 | |
| PRK09862 | 506 | putative ATP-dependent protease; Provisional | 98.45 | |
| PRK13695 | 174 | putative NTPase; Provisional | 98.43 | |
| PRK07594 | 433 | type III secretion system ATPase SsaN; Validated | 98.41 | |
| PF13555 | 62 | AAA_29: P-loop containing region of AAA domain | 98.4 | |
| PRK08149 | 428 | ATP synthase SpaL; Validated | 98.36 | |
| PRK14723 | 767 | flhF flagellar biosynthesis regulator FlhF; Provis | 98.35 | |
| KOG2878 | 282 | consensus Predicted kinase [General function predi | 98.34 | |
| cd01136 | 326 | ATPase_flagellum-secretory_path_III Flagellum-spec | 98.32 | |
| PRK09825 | 176 | idnK D-gluconate kinase; Provisional | 98.31 | |
| KOG4203 | 473 | consensus Armadillo/beta-Catenin/plakoglobin [Sign | 98.29 | |
| PRK01889 | 356 | GTPase RsgA; Reviewed | 98.27 | |
| PRK00300 | 205 | gmk guanylate kinase; Provisional | 98.24 | |
| PRK09099 | 441 | type III secretion system ATPase; Provisional | 98.24 | |
| TIGR00767 | 415 | rho transcription termination factor Rho. Members | 98.22 | |
| TIGR02546 | 422 | III_secr_ATP type III secretion apparatus H+-trans | 98.21 | |
| PRK10078 | 186 | ribose 1,5-bisphosphokinase; Provisional | 98.2 | |
| TIGR01026 | 440 | fliI_yscN ATPase FliI/YscN family. This family of | 98.18 | |
| PRK06793 | 432 | fliI flagellum-specific ATP synthase; Validated | 98.18 | |
| TIGR03498 | 418 | FliI_clade3 flagellar protein export ATPase FliI. | 98.18 | |
| PRK14722 | 374 | flhF flagellar biosynthesis regulator FlhF; Provis | 98.16 | |
| TIGR03496 | 411 | FliI_clade1 flagellar protein export ATPase FliI. | 98.14 | |
| TIGR03497 | 413 | FliI_clade2 flagellar protein export ATPase FliI. | 98.14 | |
| TIGR00152 | 188 | dephospho-CoA kinase. This model produces scores i | 98.13 | |
| cd01131 | 198 | PilT Pilus retraction ATPase PilT. PilT is a nucle | 98.11 | |
| PLN03210 | 1153 | Resistant to P. syringae 6; Provisional | 98.11 | |
| PRK05922 | 434 | type III secretion system ATPase; Validated | 98.1 | |
| PRK10416 | 318 | signal recognition particle-docking protein FtsY; | 98.1 | |
| PRK07960 | 455 | fliI flagellum-specific ATP synthase; Validated | 98.09 | |
| cd01124 | 187 | KaiC KaiC is a circadian clock protein primarily f | 98.06 | |
| PRK08472 | 434 | fliI flagellum-specific ATP synthase; Validated | 98.05 | |
| PRK03846 | 198 | adenylylsulfate kinase; Provisional | 98.05 | |
| COG0178 | 935 | UvrA Excinuclease ATPase subunit [DNA replication, | 98.05 | |
| PRK05688 | 451 | fliI flagellum-specific ATP synthase; Validated | 98.05 | |
| TIGR02322 | 179 | phosphon_PhnN phosphonate metabolism protein/1,5-b | 98.05 |
| >COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.4e-49 Score=336.62 Aligned_cols=199 Identities=18% Similarity=0.240 Sum_probs=177.3
Q ss_pred EEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCC--------
Q 021362 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP-------- 148 (313)
Q Consensus 77 ~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~-------- 148 (313)
||+++||+|+||+.. +|+|||++|++||+++|+||||||||||+|||++|.. |++|+|.++|.+.
T Consensus 2 mi~i~~l~K~fg~~~----VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE~---~~~G~I~i~g~~~~~~~~~~~ 74 (240)
T COG1126 2 MIEIKNLSKSFGDKE----VLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEE---PDSGSITVDGEDVGDKKDILK 74 (240)
T ss_pred eEEEEeeeEEeCCeE----EecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCCcC---CCCceEEECCEeccchhhHHH
Confidence 799999999999988 9999999999999999999999999999999999999 9999999999643
Q ss_pred -CCeEEEEecCCCCCCcccCCcccChHHHHH-hcCCCCCccHHHHHHHHHHhh--cCCCccCCCCCCcCCCcchhhhhhc
Q 021362 149 -PDVATVLPMDGFHLYLSQLDAMEDPKEAHA-RRGAPWTFNPLLLLNCLKNLR--NQGSVYAPSFDHGVGDPVEDDILVG 224 (313)
Q Consensus 149 -~~~i~~v~qd~~~~~~~~ltv~e~~~~~~~-~~~~~~~~~~~~~~~~l~~l~--~~~~~~~~~LSgG~kqRv~ia~al~ 224 (313)
++.+|+|||+ |++++ ++||.||+.++.. ..+.++++..+++.++|+++| +..+.|+.+|||||||||+|||||+
T Consensus 75 ~R~~vGmVFQ~-fnLFP-HlTvleNv~lap~~v~~~~k~eA~~~A~~lL~~VGL~~ka~~yP~qLSGGQqQRVAIARALa 152 (240)
T COG1126 75 LRRKVGMVFQQ-FNLFP-HLTVLENVTLAPVKVKKLSKAEAREKALELLEKVGLADKADAYPAQLSGGQQQRVAIARALA 152 (240)
T ss_pred HHHhcCeeccc-ccccc-cchHHHHHHhhhHHHcCCCHHHHHHHHHHHHHHcCchhhhhhCccccCcHHHHHHHHHHHHc
Confidence 3469999999 55553 6999999999754 567888888899999999999 4567788899999999999999999
Q ss_pred cCceEEEEcCCccccCh----hhHHHHHhhccce---EEEEcChHHHHH---HHh----hcccccCCchHHHHH
Q 021362 225 LQHKVVIVDGNYLFLDG----GVWKDVSSMFDEK---WFIEVDLDTAMQ---RVL----KRHISTGKPPDVAKW 284 (313)
Q Consensus 225 ~~ar~Li~d~~~lllDE----~~~~~l~~l~~~~---i~vtHd~~~~~~---rv~----griv~~G~~~ev~~~ 284 (313)
.+++++++|+|+.-||+ ++++.++++.+++ ++|||+|.+|.+ |++ |++++.|+|+++...
T Consensus 153 M~P~vmLFDEPTSALDPElv~EVL~vm~~LA~eGmTMivVTHEM~FAr~VadrviFmd~G~iie~g~p~~~f~~ 226 (240)
T COG1126 153 MDPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMIIVTHEMGFAREVADRVIFMDQGKIIEEGPPEEFFDN 226 (240)
T ss_pred CCCCEEeecCCcccCCHHHHHHHHHHHHHHHHcCCeEEEEechhHHHHHhhheEEEeeCCEEEEecCHHHHhcC
Confidence 99999999999999999 6677777777775 699999999998 777 999999999988643
|
|
| >COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-45 Score=323.35 Aligned_cols=207 Identities=14% Similarity=0.157 Sum_probs=180.0
Q ss_pred EEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCC--------
Q 021362 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP-------- 148 (313)
Q Consensus 77 ~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~-------- 148 (313)
||+++|++|.|++.. +++|+||+|++||+++++|||||||||+||+|++++. |++|+|+++|++.
T Consensus 1 MI~~~nvsk~y~~~~----av~~v~l~I~~gef~vliGpSGsGKTTtLkMINrLie---pt~G~I~i~g~~i~~~d~~~L 73 (309)
T COG1125 1 MIEFENVSKRYGNKK----AVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIE---PTSGEILIDGEDISDLDPVEL 73 (309)
T ss_pred CceeeeeehhcCCce----eeeeeeEEecCCeEEEEECCCCCcHHHHHHHHhcccC---CCCceEEECCeecccCCHHHH
Confidence 589999999999887 9999999999999999999999999999999999999 9999999999874
Q ss_pred CCeEEEEecCCCCCCcccCCcccChHHHHHhcCCCCCccHHHHHHHHHHhhc----CCCccCCCCCCcCCCcchhhhhhc
Q 021362 149 PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN----QGSVYAPSFDHGVGDPVEDDILVG 224 (313)
Q Consensus 149 ~~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~~~~~~~~~~~~l~~l~~----~~~~~~~~LSgG~kqRv~ia~al~ 224 (313)
++.+||+-|.-..++ ++||.||+.+.....+++++...+++.++|+.+++ +.++++.+|||||+|||.+|+|++
T Consensus 74 Rr~IGYviQqigLFP--h~Tv~eNIa~VP~L~~w~k~~i~~r~~ELl~lvgL~p~~~~~RyP~eLSGGQQQRVGv~RALA 151 (309)
T COG1125 74 RRKIGYVIQQIGLFP--HLTVAENIATVPKLLGWDKERIKKRADELLDLVGLDPSEYADRYPHELSGGQQQRVGVARALA 151 (309)
T ss_pred HHhhhhhhhhcccCC--CccHHHHHHhhhhhcCCCHHHHHHHHHHHHHHhCCCHHHHhhcCchhcCcchhhHHHHHHHHh
Confidence 346999999865554 59999999999999888888888899999999994 457788899999999999999999
Q ss_pred cCceEEEEcCCccccCh----hhHHHHHhhcc----ceEEEEcChHHHHH---HHh----hcccccCCchHHHHHHHHhc
Q 021362 225 LQHKVVIVDGNYLFLDG----GVWKDVSSMFD----EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAKWRIEYN 289 (313)
Q Consensus 225 ~~ar~Li~d~~~lllDE----~~~~~l~~l~~----~~i~vtHd~~~~~~---rv~----griv~~G~~~ev~~~~~~~~ 289 (313)
.++.+|++|+|+--||+ .+.+++.++.+ ..+|||||+++|.+ |++ |+++..+.|++++..
T Consensus 152 adP~ilLMDEPFgALDpI~R~~lQ~e~~~lq~~l~kTivfVTHDidEA~kLadri~vm~~G~i~Q~~~P~~il~~----- 226 (309)
T COG1125 152 ADPPILLMDEPFGALDPITRKQLQEEIKELQKELGKTIVFVTHDIDEALKLADRIAVMDAGEIVQYDTPDEILAN----- 226 (309)
T ss_pred cCCCeEeecCCccccChhhHHHHHHHHHHHHHHhCCEEEEEecCHHHHHhhhceEEEecCCeEEEeCCHHHHHhC-----
Confidence 99999999999999999 44444444433 35799999999998 766 999999999999765
Q ss_pred CCchhHHhhh
Q 021362 290 DRPNAELIMK 299 (313)
Q Consensus 290 ~~~~~~~i~~ 299 (313)
|..+|+..
T Consensus 227 --Pan~FV~~ 234 (309)
T COG1125 227 --PANDFVED 234 (309)
T ss_pred --ccHHHHHH
Confidence 55555544
|
|
| >COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-45 Score=343.42 Aligned_cols=210 Identities=16% Similarity=0.210 Sum_probs=176.1
Q ss_pred ccEEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCC------
Q 021362 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP------ 148 (313)
Q Consensus 75 m~~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~------ 148 (313)
++.|+++||+|.||+.. +|+|+||+|++||+++|+||||||||||||+|+|+.. |++|+|.++|++.
T Consensus 3 ~~~l~i~~v~k~yg~~~----av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~---p~~G~I~l~G~~i~~lpp~ 75 (352)
T COG3842 3 KPALEIRNVSKSFGDFT----AVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQ---PSSGEILLDGEDITDVPPE 75 (352)
T ss_pred CceEEEEeeeeecCCee----EEecceeeecCCcEEEEECCCCCCHHHHHHHHhCCCC---CCCceEEECCEECCCCChh
Confidence 45799999999999877 9999999999999999999999999999999999999 9999999999773
Q ss_pred CCeEEEEecCCCCCCcccCCcccChHHHHHhcCC-CCCccHHHHHHHHHHhh--cCCCccCCCCCCcCCCcchhhhhhcc
Q 021362 149 PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGA-PWTFNPLLLLNCLKNLR--NQGSVYAPSFDHGVGDPVEDDILVGL 225 (313)
Q Consensus 149 ~~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~-~~~~~~~~~~~~l~~l~--~~~~~~~~~LSgG~kqRv~ia~al~~ 225 (313)
.+.+++|||+ |-+++ +|||.||++|++...+. +.++..+++.++|+.++ ...++++.+|||||||||++|+||+.
T Consensus 76 kR~ig~VFQ~-YALFP-HltV~~NVafGLk~~~~~~~~~i~~rv~e~L~lV~L~~~~~R~p~qLSGGQqQRVALARAL~~ 153 (352)
T COG3842 76 KRPIGMVFQS-YALFP-HMTVEENVAFGLKVRKKLKKAEIKARVEEALELVGLEGFADRKPHQLSGGQQQRVALARALVP 153 (352)
T ss_pred hcccceeecC-cccCC-CCcHHHHhhhhhhhcCCCCHHHHHHHHHHHHHHcCchhhhhhChhhhChHHHHHHHHHHHhhc
Confidence 3569999999 44443 79999999999985443 33456678999999988 45677888999999999999999999
Q ss_pred CceEEEEcCCccccChhh----HHHHHhhccc----eEEEEcChHHHHH---HHh----hcccccCCchHHHHHHHHhcC
Q 021362 226 QHKVVIVDGNYLFLDGGV----WKDVSSMFDE----KWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAKWRIEYND 290 (313)
Q Consensus 226 ~ar~Li~d~~~lllDE~~----~~~l~~l~~~----~i~vtHd~~~~~~---rv~----griv~~G~~~ev~~~~~~~~~ 290 (313)
++++|++|+|+.-||.++ ..+++++.++ .||||||.++++. |++ |++...|+|+|+..+
T Consensus 154 ~P~vLLLDEPlSaLD~kLR~~mr~Elk~lq~~~giT~i~VTHDqeEAl~msDrI~Vm~~G~I~Q~gtP~eiY~~------ 227 (352)
T COG3842 154 EPKVLLLDEPLSALDAKLREQMRKELKELQRELGITFVYVTHDQEEALAMSDRIAVMNDGRIEQVGTPEEIYER------ 227 (352)
T ss_pred CcchhhhcCcccchhHHHHHHHHHHHHHHHHhcCCeEEEEECCHHHHhhhccceEEccCCceeecCCHHHHhhC------
Confidence 999999999999999844 4444444433 4799999999998 776 999999999999554
Q ss_pred CchhHHhhhc
Q 021362 291 RPNAELIMKS 300 (313)
Q Consensus 291 ~~~~~~i~~~ 300 (313)
|...|+...
T Consensus 228 -P~~~fVA~F 236 (352)
T COG3842 228 -PATRFVADF 236 (352)
T ss_pred -cchHHHHHH
Confidence 555554443
|
|
| >COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-44 Score=319.11 Aligned_cols=185 Identities=17% Similarity=0.211 Sum_probs=163.3
Q ss_pred cEEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCC---CCCeE
Q 021362 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK---PPDVA 152 (313)
Q Consensus 76 ~~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~---~~~~i 152 (313)
.+++++++++.|++.. +|+|+||+|.+|||++|+||||||||||||+|+|+.+ |++|+|.++|.+ +...+
T Consensus 2 ~~l~i~~v~~~f~~~~----vl~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~~---p~~G~V~~~g~~v~~p~~~~ 74 (248)
T COG1116 2 ALLEIEGVSKSFGGVE----VLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEK---PTSGEVLLDGRPVTGPGPDI 74 (248)
T ss_pred ceEEEEeeEEEeCceE----EeccceeEECCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCceEEECCcccCCCCCCE
Confidence 4799999999999876 9999999999999999999999999999999999999 999999999976 34569
Q ss_pred EEEecCCCCCCcccCCcccChHHHHHhcCCCCCccHHHHHHHHHHhhc--CCCccCCCCCCcCCCcchhhhhhccCceEE
Q 021362 153 TVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDILVGLQHKVV 230 (313)
Q Consensus 153 ~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~~~~~~~~~~~~l~~l~~--~~~~~~~~LSgG~kqRv~ia~al~~~ar~L 230 (313)
+||||+...++ |+||.+|+.+++...+.+..+..+++.++|+.+|+ ..++++.+|||||||||+||+|++.++++|
T Consensus 75 ~~vFQ~~~LlP--W~Tv~~NV~l~l~~~~~~~~e~~~~a~~~L~~VgL~~~~~~~P~qLSGGMrQRVaiARAL~~~P~lL 152 (248)
T COG1116 75 GYVFQEDALLP--WLTVLDNVALGLELRGKSKAEARERAKELLELVGLAGFEDKYPHQLSGGMRQRVAIARALATRPKLL 152 (248)
T ss_pred EEEeccCcccc--hhhHHhhheehhhccccchHhHHHHHHHHHHHcCCcchhhcCccccChHHHHHHHHHHHHhcCCCEE
Confidence 99999966544 69999999999988877777777889999999994 567788899999999999999999999999
Q ss_pred EEcCCccccCh----hhHHHHHhhccc----eEEEEcChHHHHH---HHh
Q 021362 231 IVDGNYLFLDG----GVWKDVSSMFDE----KWFIEVDLDTAMQ---RVL 269 (313)
Q Consensus 231 i~d~~~lllDE----~~~~~l~~l~~~----~i~vtHd~~~~~~---rv~ 269 (313)
++|+|+--||+ ++.+.+.++..+ ++|||||+++|.. ||+
T Consensus 153 LlDEPFgALDalTR~~lq~~l~~lw~~~~~TvllVTHdi~EAv~LsdRiv 202 (248)
T COG1116 153 LLDEPFGALDALTREELQDELLRLWEETRKTVLLVTHDVDEAVYLADRVV 202 (248)
T ss_pred EEcCCcchhhHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHhhhCEEE
Confidence 99999999999 555555555543 5799999999987 554
|
|
| >COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-44 Score=335.87 Aligned_cols=201 Identities=17% Similarity=0.188 Sum_probs=177.2
Q ss_pred ccEEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCCC-----
Q 021362 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPP----- 149 (313)
Q Consensus 75 m~~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~~----- 149 (313)
|.+|+++||+|.||+.. +|+++||+|+.||+++|+||||||||||||+|+||.. |++|+|.++|.+..
T Consensus 1 M~~i~l~~v~K~yg~~~----~l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe~---~~~G~I~i~g~~vt~l~P~ 73 (338)
T COG3839 1 MAELELKNVRKSFGSFE----VLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEE---PTSGEILIDGRDVTDLPPE 73 (338)
T ss_pred CcEEEEeeeEEEcCCce----eeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCceEEECCEECCCCChh
Confidence 56899999999999876 8999999999999999999999999999999999999 99999999997643
Q ss_pred -CeEEEEecCCCCCCcccCCcccChHHHHHhcCCCCCccHHHHHHHHHHhh--cCCCccCCCCCCcCCCcchhhhhhccC
Q 021362 150 -DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLR--NQGSVYAPSFDHGVGDPVEDDILVGLQ 226 (313)
Q Consensus 150 -~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~~~~~~~~~~~~l~~l~--~~~~~~~~~LSgG~kqRv~ia~al~~~ 226 (313)
+.+++|||+. .+++ +|||+||+.|+++..+.++.+..+++.++.+.++ ...++++.+|||||||||++|+|++.+
T Consensus 74 ~R~iamVFQ~y-ALyP-hmtV~~Niaf~Lk~~~~~k~ei~~rV~eva~~L~l~~lL~r~P~~LSGGQrQRVAlaRAlVr~ 151 (338)
T COG3839 74 KRGIAMVFQNY-ALYP-HMTVYENIAFGLKLRGVPKAEIDKRVKEVAKLLGLEHLLNRKPLQLSGGQRQRVALARALVRK 151 (338)
T ss_pred HCCEEEEeCCc-cccC-CCcHHHHhhhhhhhCCCchHHHHHHHHHHHHHcCChhHHhcCcccCChhhHHHHHHHHHHhcC
Confidence 4699999994 4443 6999999999999999998888999999999998 557888889999999999999999999
Q ss_pred ceEEEEcCCccccChh----hHHHHHhhcc----ceEEEEcChHHHHH---HHh----hcccccCCchHHHHH
Q 021362 227 HKVVIVDGNYLFLDGG----VWKDVSSMFD----EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAKW 284 (313)
Q Consensus 227 ar~Li~d~~~lllDE~----~~~~l~~l~~----~~i~vtHd~~~~~~---rv~----griv~~G~~~ev~~~ 284 (313)
++++++|+|+.-||.+ +..+|+++.+ ..|+||||..+++. |++ |++...|+|.++...
T Consensus 152 P~v~L~DEPlSnLDa~lR~~mr~ei~~lh~~l~~T~IYVTHDq~EAmtladri~Vm~~G~i~Q~g~p~ely~~ 224 (338)
T COG3839 152 PKVFLLDEPLSNLDAKLRVLMRSEIKKLHERLGTTTIYVTHDQVEAMTLADRIVVMNDGRIQQVGTPLELYER 224 (338)
T ss_pred CCEEEecCchhHhhHHHHHHHHHHHHHHHHhcCCcEEEEcCCHHHHHhhCCEEEEEeCCeeeecCChHHHhhC
Confidence 9999999999999994 4444444433 24899999999998 665 999999999998643
|
|
| >COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-44 Score=323.90 Aligned_cols=202 Identities=16% Similarity=0.176 Sum_probs=175.1
Q ss_pred EEEEccceEEccc-cccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCC-------
Q 021362 77 VVEARCMDEVYDA-LAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP------- 148 (313)
Q Consensus 77 ~l~~~~l~~~y~~-~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~------- 148 (313)
||++++++|.|.. ....+.+|+||||+|++|||+||+|.||||||||+|||++|.+ |++|+|.++|++.
T Consensus 1 mI~l~~vsK~~~~~~~~~~~al~~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~Le~---PtsG~v~v~G~di~~l~~~~ 77 (339)
T COG1135 1 MIELENVSKTFGQTGTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLER---PTSGSVFVDGQDLTALSEAE 77 (339)
T ss_pred CeEEEeeeeeeccCCCCceeeeccceEEEcCCcEEEEEcCCCCcHHHHHHHHhccCC---CCCceEEEcCEecccCChHH
Confidence 5899999999987 3234569999999999999999999999999999999999999 9999999999652
Q ss_pred ----CCeEEEEecCCCCCCcccCCcccChHHHHHhcCCCCCccHHHHHHHHHHhh--cCCCccCCCCCCcCCCcchhhhh
Q 021362 149 ----PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLR--NQGSVYAPSFDHGVGDPVEDDIL 222 (313)
Q Consensus 149 ----~~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~~~~~~~~~~~~l~~l~--~~~~~~~~~LSgG~kqRv~ia~a 222 (313)
+++||++||+. ++.. ..||++|++|++...+.++++..+++.++|+.+| +..+.++.+|||||||||+||||
T Consensus 78 Lr~~R~~IGMIFQhF-nLLs-srTV~~NvA~PLeiag~~k~ei~~RV~elLelVgL~dk~~~yP~qLSGGQKQRVaIARA 155 (339)
T COG1135 78 LRQLRQKIGMIFQHF-NLLS-SRTVFENVAFPLELAGVPKAEIKQRVAELLELVGLSDKADRYPAQLSGGQKQRVAIARA 155 (339)
T ss_pred HHHHHhhccEEeccc-cccc-cchHHhhhhhhHhhcCCCHHHHHHHHHHHHHHcCChhhhccCchhcCcchhhHHHHHHH
Confidence 35699999994 4443 3799999999999999998889999999999999 44566777999999999999999
Q ss_pred hccCceEEEEcCCccccCh----hhHHHHHhhccc----eEEEEcChHHHHH---HHh----hcccccCCchHHHH
Q 021362 223 VGLQHKVVIVDGNYLFLDG----GVWKDVSSMFDE----KWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAK 283 (313)
Q Consensus 223 l~~~ar~Li~d~~~lllDE----~~~~~l~~l~~~----~i~vtHd~~~~~~---rv~----griv~~G~~~ev~~ 283 (313)
++.+|++|+.|+.+.-||+ .+++.|+++..+ .++|||.|+.+.. |+. |++++.|+..++..
T Consensus 156 La~~P~iLL~DEaTSALDP~TT~sIL~LL~~In~~lglTIvlITHEm~Vvk~ic~rVavm~~G~lvE~G~v~~vF~ 231 (339)
T COG1135 156 LANNPKILLCDEATSALDPETTQSILELLKDINRELGLTIVLITHEMEVVKRICDRVAVLDQGRLVEEGTVSEVFA 231 (339)
T ss_pred HhcCCCEEEecCccccCChHHHHHHHHHHHHHHHHcCCEEEEEechHHHHHHHhhhheEeeCCEEEEeccHHHhhc
Confidence 9999999999999999999 444444444433 3699999999998 776 99999999888743
|
|
| >COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-43 Score=304.39 Aligned_cols=207 Identities=17% Similarity=0.166 Sum_probs=176.8
Q ss_pred cEEEEccceEEc-cccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCC------
Q 021362 76 PVVEARCMDEVY-DALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP------ 148 (313)
Q Consensus 76 ~~l~~~~l~~~y-~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~------ 148 (313)
.+|+++||++.| +++. +|+||||+|++||+++|+||||||||||||+|+|+.. |++|+|.++|.+.
T Consensus 2 ~~i~~~nl~k~yp~~~~----aL~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl~d---~t~G~i~~~g~~i~~~~~k 74 (258)
T COG3638 2 MMIEVKNLSKTYPGGHQ----ALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVD---PTSGEILFNGVQITKLKGK 74 (258)
T ss_pred ceEEEeeeeeecCCCce----eeeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhcccC---CCcceEEecccchhccchH
Confidence 479999999999 6666 9999999999999999999999999999999999999 9999999999663
Q ss_pred -----CCeEEEEecCCCCCCcccCCcccChHHHHH--------hcCCCCCccHHHHHHHHHHhhc--CCCccCCCCCCcC
Q 021362 149 -----PDVATVLPMDGFHLYLSQLDAMEDPKEAHA--------RRGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGV 213 (313)
Q Consensus 149 -----~~~i~~v~qd~~~~~~~~ltv~e~~~~~~~--------~~~~~~~~~~~~~~~~l~~l~~--~~~~~~~~LSgG~ 213 (313)
++.+||+||++...+ .++|.+|+..+.. .++....+++..+.++|+++|. ....+..+|||||
T Consensus 75 ~lr~~r~~iGmIfQ~~nLv~--r~sv~~NVl~grl~~~s~~~slfglfsk~dk~~Al~aLervgi~~~A~qra~~LSGGQ 152 (258)
T COG3638 75 ELRKLRRDIGMIFQQFNLVP--RLSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALDALERVGILDKAYQRASTLSGGQ 152 (258)
T ss_pred HHHHHHHhceeEeccCCccc--ccHHHHHHHhhhcccchHHHHHhCCCCHHHHHHHHHHHHHcCcHHHHHHHhccCCcch
Confidence 235999999965444 4899999987642 3456667788889999999994 4556778999999
Q ss_pred CCcchhhhhhccCceEEEEcCCccccCh----hhHHHHHhhccc----eEEEEcChHHHHH---HHh----hcccccCCc
Q 021362 214 GDPVEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFDE----KWFIEVDLDTAMQ---RVL----KRHISTGKP 278 (313)
Q Consensus 214 kqRv~ia~al~~~ar~Li~d~~~lllDE----~~~~~l~~l~~~----~i~vtHd~~~~~~---rv~----griv~~G~~ 278 (313)
+|||+||+||+.++++++.|+|+.-||+ .+++.|+++..+ .++..|+++.|.+ |++ ||++++|++
T Consensus 153 QQRVaIARaL~Q~pkiILADEPvasLDp~~a~~Vm~~l~~in~~~g~Tvi~nLH~vdlA~~Y~~Riigl~~G~ivfDg~~ 232 (258)
T COG3638 153 QQRVAIARALVQQPKIILADEPVASLDPESAKKVMDILKDINQEDGITVIVNLHQVDLAKKYADRIIGLKAGRIVFDGPA 232 (258)
T ss_pred hHHHHHHHHHhcCCCEEecCCcccccChhhHHHHHHHHHHHHHHcCCEEEEEechHHHHHHHHhhheEecCCcEEEeCCh
Confidence 9999999999999999999999999999 677777777643 3588899999999 888 999999999
Q ss_pred hHHHHHHHHhcCC
Q 021362 279 PDVAKWRIEYNDR 291 (313)
Q Consensus 279 ~ev~~~~~~~~~~ 291 (313)
.++-.+.+...+-
T Consensus 233 ~el~~~~~~~iYg 245 (258)
T COG3638 233 SELTDEALDEIYG 245 (258)
T ss_pred hhhhHHHHHHHhc
Confidence 8876665554443
|
|
| >COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-43 Score=313.29 Aligned_cols=206 Identities=17% Similarity=0.151 Sum_probs=176.8
Q ss_pred EEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCC--------
Q 021362 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP-------- 148 (313)
Q Consensus 77 ~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~-------- 148 (313)
+|+++||++.|+++. +|+|+||+|++|++++|+||||||||||||+|+|+++ |.+|+|.++|++.
T Consensus 2 ~L~~~~ls~~y~~~~----il~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~---p~~G~V~l~g~~i~~~~~kel 74 (258)
T COG1120 2 MLEVENLSFGYGGKP----ILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLK---PKSGEVLLDGKDIASLSPKEL 74 (258)
T ss_pred eeEEEEEEEEECCee----EEecceEEecCCcEEEEECCCCCCHHHHHHHHhccCC---CCCCEEEECCCchhhcCHHHH
Confidence 699999999999888 9999999999999999999999999999999999999 9999999999773
Q ss_pred CCeEEEEecCCCCCCcccCCcccChHHHHHh----cCCCCCccHHHHHHHHHHhh--cCCCccCCCCCCcCCCcchhhhh
Q 021362 149 PDVATVLPMDGFHLYLSQLDAMEDPKEAHAR----RGAPWTFNPLLLLNCLKNLR--NQGSVYAPSFDHGVGDPVEDDIL 222 (313)
Q Consensus 149 ~~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~----~~~~~~~~~~~~~~~l~~l~--~~~~~~~~~LSgG~kqRv~ia~a 222 (313)
.+.++|+||..... ..+||+|-+.++..- ++.+...|.+.+.++|+.++ ...++.+.+|||||||||.||+|
T Consensus 75 Ak~ia~vpQ~~~~~--~~~tV~d~V~~GR~p~~~~~~~~~~~D~~~v~~aL~~~~~~~la~r~~~~LSGGerQrv~iArA 152 (258)
T COG1120 75 AKKLAYVPQSPSAP--FGLTVYELVLLGRYPHLGLFGRPSKEDEEIVEEALELLGLEHLADRPVDELSGGERQRVLIARA 152 (258)
T ss_pred hhhEEEeccCCCCC--CCcEEeehHhhcCCcccccccCCCHhHHHHHHHHHHHhCcHHHhcCcccccChhHHHHHHHHHH
Confidence 35799999996433 358999999887542 22234556667889999998 56778899999999999999999
Q ss_pred hccCceEEEEcCCccccCh----hhHHHHHhhccc----eEEEEcChHHHHH---HHh----hcccccCCchHHHHHHHH
Q 021362 223 VGLQHKVVIVDGNYLFLDG----GVWKDVSSMFDE----KWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAKWRIE 287 (313)
Q Consensus 223 l~~~ar~Li~d~~~lllDE----~~~~~l~~l~~~----~i~vtHd~~~~~~---rv~----griv~~G~~~ev~~~~~~ 287 (313)
++.++++|++|+|+..||. ++++.++++.++ +|+|.||++.+.+ +++ |++++.|.|++++.....
T Consensus 153 LaQ~~~iLLLDEPTs~LDi~~Q~evl~ll~~l~~~~~~tvv~vlHDlN~A~ryad~~i~lk~G~i~a~G~p~evlT~e~l 232 (258)
T COG1120 153 LAQETPILLLDEPTSHLDIAHQIEVLELLRDLNREKGLTVVMVLHDLNLAARYADHLILLKDGKIVAQGTPEEVLTEENL 232 (258)
T ss_pred HhcCCCEEEeCCCccccCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCeEEeecCcchhcCHHHH
Confidence 9999999999999999999 788888888744 4799999999998 666 999999999998766544
Q ss_pred hcCC
Q 021362 288 YNDR 291 (313)
Q Consensus 288 ~~~~ 291 (313)
..++
T Consensus 233 ~~Vy 236 (258)
T COG1120 233 REVY 236 (258)
T ss_pred HHHh
Confidence 4433
|
|
| >COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-43 Score=304.50 Aligned_cols=200 Identities=20% Similarity=0.243 Sum_probs=171.5
Q ss_pred ccEEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCC------
Q 021362 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP------ 148 (313)
Q Consensus 75 m~~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~------ 148 (313)
.++|++++|+++||++. +++|+||+|++||+++|+||||||||||+|+|.|+++ |++|+|+++|.+.
T Consensus 6 ~~~I~vr~v~~~fG~~~----Ild~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~---P~~GeI~i~G~~i~~ls~~ 78 (263)
T COG1127 6 EPLIEVRGVTKSFGDRV----ILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLR---PDKGEILIDGEDIPQLSEE 78 (263)
T ss_pred cceEEEeeeeeecCCEE----EecCceeeecCCcEEEEECCCCcCHHHHHHHHhccCC---CCCCeEEEcCcchhccCHH
Confidence 35899999999999998 9999999999999999999999999999999999999 9999999999873
Q ss_pred -----CCeEEEEecCCCCCCcccCCcccChHHHHHhc-CCCCCccHHHHHHHHHHhhcC---CCccCCCCCCcCCCcchh
Q 021362 149 -----PDVATVLPMDGFHLYLSQLDAMEDPKEAHARR-GAPWTFNPLLLLNCLKNLRNQ---GSVYAPSFDHGVGDPVED 219 (313)
Q Consensus 149 -----~~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~-~~~~~~~~~~~~~~l~~l~~~---~~~~~~~LSgG~kqRv~i 219 (313)
.+++|++||++..+. .+||+||+.++++.+ ..++...++.+..-|+.+|+. .+.++.+|||||++|+++
T Consensus 79 ~~~~ir~r~GvlFQ~gALFs--sltV~eNVafplre~~~lp~~~i~~lv~~KL~~VGL~~~~~~~~PsELSGGM~KRvaL 156 (263)
T COG1127 79 ELYEIRKRMGVLFQQGALFS--SLTVFENVAFPLREHTKLPESLIRELVLMKLELVGLRGAAADLYPSELSGGMRKRVAL 156 (263)
T ss_pred HHHHHHhheeEEeecccccc--ccchhHhhheehHhhccCCHHHHHHHHHHHHHhcCCChhhhhhCchhhcchHHHHHHH
Confidence 346999999987665 499999999987654 466666677777888888854 456777999999999999
Q ss_pred hhhhccCceEEEEcCCccccCh----hhHHHHHhhcc---c-eEEEEcChHHHHH---HHh----hcccccCCchHHHH
Q 021362 220 DILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFD---E-KWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAK 283 (313)
Q Consensus 220 a~al~~~ar~Li~d~~~lllDE----~~~~~l~~l~~---~-~i~vtHd~~~~~~---rv~----griv~~G~~~ev~~ 283 (313)
|||++.++.+|+.|+|+..||+ .+-+.|+++.+ . .++||||++.+.. |++ |++++.|+++++..
T Consensus 157 ARAialdPell~~DEPtsGLDPI~a~~~~~LI~~L~~~lg~T~i~VTHDl~s~~~i~Drv~~L~~gkv~~~Gt~~el~~ 235 (263)
T COG1127 157 ARAIALDPELLFLDEPTSGLDPISAGVIDELIRELNDALGLTVIMVTHDLDSLLTIADRVAVLADGKVIAEGTPEELLA 235 (263)
T ss_pred HHHHhcCCCEEEecCCCCCCCcchHHHHHHHHHHHHHhhCCEEEEEECChHHHHhhhceEEEEeCCEEEEeCCHHHHHh
Confidence 9999999999999999999999 33333333333 2 4799999999988 665 99999999999865
|
|
| >COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.4e-43 Score=293.94 Aligned_cols=191 Identities=18% Similarity=0.131 Sum_probs=164.5
Q ss_pred EEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCC--------
Q 021362 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP-------- 148 (313)
Q Consensus 77 ~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~-------- 148 (313)
||+++||+|.|++.. .+|+||||+|++||++.|+||||||||||+|+|.+..+ |++|+|+++|.+.
T Consensus 1 mI~f~~V~k~Y~~g~---~aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e~---pt~G~i~~~~~dl~~l~~~~i 74 (223)
T COG2884 1 MIRFENVSKAYPGGR---EALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEER---PTRGKILVNGHDLSRLKGREI 74 (223)
T ss_pred CeeehhhhhhcCCCc---hhhhCceEeecCceEEEEECCCCCCHHHHHHHHHhhhc---CCCceEEECCeeccccccccc
Confidence 589999999998643 39999999999999999999999999999999999999 9999999999772
Q ss_pred ---CCeEEEEecCCCCCCcccCCcccChHHHHHhcCCCCCccHHHHHHHHHHhhcC--CCccCCCCCCcCCCcchhhhhh
Q 021362 149 ---PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILV 223 (313)
Q Consensus 149 ---~~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~~~~~LSgG~kqRv~ia~al 223 (313)
+++||+||||.-.++ ++||+||+++++...|.+..+..+++.++|+.+|+. .+..+.+|||||||||+||+|+
T Consensus 75 P~LRR~IGvVFQD~rLL~--~~tvyeNVA~pL~v~G~~~~~i~~rV~~~L~~VgL~~k~~~lP~~LSGGEQQRvaIARAi 152 (223)
T COG2884 75 PFLRRQIGVVFQDFRLLP--DRTVYENVALPLRVIGKPPREIRRRVSEVLDLVGLKHKARALPSQLSGGEQQRVAIARAI 152 (223)
T ss_pred chhhheeeeEeeeccccc--cchHhhhhhhhhhccCCCHHHHHHHHHHHHHHhccchhhhcCccccCchHHHHHHHHHHH
Confidence 356999999954444 489999999999999999888999999999999954 4456679999999999999999
Q ss_pred ccCceEEEEcCCccccChhhHHHHHhhcc-------ceEEEEcChHHHHH---HHh----hccccc
Q 021362 224 GLQHKVVIVDGNYLFLDGGVWKDVSSMFD-------EKWFIEVDLDTAMQ---RVL----KRHIST 275 (313)
Q Consensus 224 ~~~ar~Li~d~~~lllDE~~~~~l~~l~~-------~~i~vtHd~~~~~~---rv~----griv~~ 275 (313)
+.++.+|+.|+|+--||+..-.+|.+++. .+++.|||.+.+.. |++ ||++.+
T Consensus 153 V~~P~vLlADEPTGNLDp~~s~~im~lfeeinr~GtTVl~ATHd~~lv~~~~~rvl~l~~Grl~~d 218 (223)
T COG2884 153 VNQPAVLLADEPTGNLDPDLSWEIMRLFEEINRLGTTVLMATHDLELVNRMRHRVLALEDGRLVRD 218 (223)
T ss_pred ccCCCeEeecCCCCCCChHHHHHHHHHHHHHhhcCcEEEEEeccHHHHHhccCcEEEEeCCEEEec
Confidence 99999999999999999944444444333 34799999999988 555 777754
|
|
| >COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-42 Score=309.65 Aligned_cols=203 Identities=16% Similarity=0.153 Sum_probs=171.2
Q ss_pred ccEEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCC-----C
Q 021362 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP-----P 149 (313)
Q Consensus 75 m~~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~-----~ 149 (313)
|++|+++|+++.|++.. +|+||||+|++|++++|+||||||||||+|+|+|+++ |++|+|.+.|.+. .
T Consensus 2 ~~~i~v~nl~v~y~~~~----vl~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll~---p~~G~i~~~g~~~~~~~~~ 74 (254)
T COG1121 2 MPMIEVENLTVSYGNRP----VLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLK---PSSGEIKIFGKPVRKRRKR 74 (254)
T ss_pred CcEEEEeeeEEEECCEe----eeeccEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCc---CCcceEEEccccccccccC
Confidence 56899999999999656 9999999999999999999999999999999999999 9999999998752 2
Q ss_pred CeEEEEecCCCCCCcccCCcccChHHHHHh----cCCCCCccHHHHHHHHHHhh--cCCCccCCCCCCcCCCcchhhhhh
Q 021362 150 DVATVLPMDGFHLYLSQLDAMEDPKEAHAR----RGAPWTFNPLLLLNCLKNLR--NQGSVYAPSFDHGVGDPVEDDILV 223 (313)
Q Consensus 150 ~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~----~~~~~~~~~~~~~~~l~~l~--~~~~~~~~~LSgG~kqRv~ia~al 223 (313)
.+||||||....-....+||+|.+..+... .+.+.+.+.+.+.++|++++ ...++.+.+|||||+|||.||+||
T Consensus 75 ~~IgYVPQ~~~~d~~fP~tV~d~V~~g~~~~~g~~~~~~~~d~~~v~~aL~~Vgm~~~~~r~i~~LSGGQ~QRV~lARAL 154 (254)
T COG1121 75 LRIGYVPQKSSVDRSFPITVKDVVLLGRYGKKGWFRRLNKKDKEKVDEALERVGMEDLRDRQIGELSGGQKQRVLLARAL 154 (254)
T ss_pred CeEEEcCcccccCCCCCcCHHHHHHccCcccccccccccHHHHHHHHHHHHHcCchhhhCCcccccCcHHHHHHHHHHHh
Confidence 469999996422222238999998886322 22334556788999999999 567889999999999999999999
Q ss_pred ccCceEEEEcCCccccCh----hhHHHHHhhccc---eEEEEcChHHHHH---HHh---hcccccCCchHHHHH
Q 021362 224 GLQHKVVIVDGNYLFLDG----GVWKDVSSMFDE---KWFIEVDLDTAMQ---RVL---KRHISTGKPPDVAKW 284 (313)
Q Consensus 224 ~~~ar~Li~d~~~lllDE----~~~~~l~~l~~~---~i~vtHd~~~~~~---rv~---griv~~G~~~ev~~~ 284 (313)
+.+|++|++|+|+..+|. .+.+.|.++.++ +++||||++.+.. +++ +++++.|+++++...
T Consensus 155 ~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~eg~tIl~vtHDL~~v~~~~D~vi~Ln~~~~~~G~~~~~~~~ 228 (254)
T COG1121 155 AQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQEGKTVLMVTHDLGLVMAYFDRVICLNRHLIASGPPEEVLTE 228 (254)
T ss_pred ccCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCcHHhHhhCCEEEEEcCeeEeccChhhccCH
Confidence 999999999999999999 555666666554 4699999999998 666 888999999998764
|
|
| >COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-43 Score=313.66 Aligned_cols=207 Identities=18% Similarity=0.262 Sum_probs=174.3
Q ss_pred EEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCC---CC-----
Q 021362 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQV---KP----- 148 (313)
Q Consensus 77 ~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~---~~----- 148 (313)
+|.+++++|.|+... +++|||++|+.||.++|+||||||||||||+|+||+. |++|.|.++|+ +.
T Consensus 2 ~i~i~~~~~~~~~~~----a~~di~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~---p~~G~I~~~~~~l~D~~~~~~ 74 (345)
T COG1118 2 SIRINNVKKRFGAFG----ALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLET---PDAGRIRLNGRVLFDVSNLAV 74 (345)
T ss_pred ceeehhhhhhccccc----ccccceeeecCCcEEEEECCCCCcHHHHHHHHhCcCC---CCCceEEECCEeccchhccch
Confidence 589999999999988 9999999999999999999999999999999999999 99999999998 42
Q ss_pred -CCeEEEEecCCCCCCcccCCcccChHHHHHhcC-CC-CCccHHHHHHHHHHhh--cCCCccCCCCCCcCCCcchhhhhh
Q 021362 149 -PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRG-AP-WTFNPLLLLNCLKNLR--NQGSVYAPSFDHGVGDPVEDDILV 223 (313)
Q Consensus 149 -~~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~-~~-~~~~~~~~~~~l~~l~--~~~~~~~~~LSgG~kqRv~ia~al 223 (313)
.++||||||+. .+++ +|||.+|++|++..+. .+ ....+.++.++|+.+. ...++|+.+|||||+|||++|+|+
T Consensus 75 ~~R~VGfvFQ~Y-ALF~-HmtVa~NIAFGl~~~~~~p~~~~~r~rv~elL~lvqL~~la~ryP~QLSGGQrQRVALARAL 152 (345)
T COG1118 75 RDRKVGFVFQHY-ALFP-HMTVADNIAFGLKVRKERPSEAEIRARVEELLRLVQLEGLADRYPAQLSGGQRQRVALARAL 152 (345)
T ss_pred hhcceeEEEech-hhcc-cchHHhhhhhcccccccCCChhhHHHHHHHHHHHhcccchhhcCchhcChHHHHHHHHHHHh
Confidence 34699999994 4443 7999999999986552 22 3456778899998877 456778889999999999999999
Q ss_pred ccCceEEEEcCCccccChhhHHHHHhhc----cc----eEEEEcChHHHHH---HHh----hcccccCCchHHHHHHHHh
Q 021362 224 GLQHKVVIVDGNYLFLDGGVWKDVSSMF----DE----KWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAKWRIEY 288 (313)
Q Consensus 224 ~~~ar~Li~d~~~lllDE~~~~~l~~l~----~~----~i~vtHd~~~~~~---rv~----griv~~G~~~ev~~~~~~~ 288 (313)
+..+++|++|+|+--||.++.+++++.. ++ .+|||||.+++.+ |++ |+|...|+++|+...
T Consensus 153 A~eP~vLLLDEPf~ALDa~vr~~lr~wLr~~~~~~~~ttvfVTHD~eea~~ladrvvvl~~G~Ieqvg~p~ev~~~---- 228 (345)
T COG1118 153 AVEPKVLLLDEPFGALDAKVRKELRRWLRKLHDRLGVTTVFVTHDQEEALELADRVVVLNQGRIEQVGPPDEVYDH---- 228 (345)
T ss_pred hcCCCeEeecCCchhhhHHHHHHHHHHHHHHHHhhCceEEEEeCCHHHHHhhcceEEEecCCeeeeeCCHHHHhcC----
Confidence 9999999999999999996665555544 32 4799999999999 776 999999999999543
Q ss_pred cCCchhHHhhh
Q 021362 289 NDRPNAELIMK 299 (313)
Q Consensus 289 ~~~~~~~~i~~ 299 (313)
|+..|+.+
T Consensus 229 ---P~s~fV~~ 236 (345)
T COG1118 229 ---PASRFVAR 236 (345)
T ss_pred ---CCccceec
Confidence 66555433
|
|
| >COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-42 Score=301.68 Aligned_cols=205 Identities=15% Similarity=0.131 Sum_probs=175.8
Q ss_pred ccEEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCC------
Q 021362 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP------ 148 (313)
Q Consensus 75 m~~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~------ 148 (313)
|++|+++||++.|+.......+|++|||+|.+||++||+|+||||||||+++|+|+.+ |++|+|.++|.+.
T Consensus 1 ~~~l~v~nl~~~y~~~~~~~~~l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~---p~~G~I~~~G~~~~~~~~~ 77 (252)
T COG1124 1 MTLLSVRNLSIVYGGGKFAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEK---PSSGSILLDGKPLAPKKRA 77 (252)
T ss_pred CceEEEeceEEEecCCcchhhhhcceeEEecCCCEEEEEcCCCCCHHHHHHHHhcccC---CCCceEEECCcccCccccc
Confidence 3589999999999876544569999999999999999999999999999999999999 9999999999642
Q ss_pred ---CCeEEEEecCCCCCCcccCCcccChHHHHHhcCCCCCccHHHHHHHHHHhhc---CCCccCCCCCCcCCCcchhhhh
Q 021362 149 ---PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN---QGSVYAPSFDHGVGDPVEDDIL 222 (313)
Q Consensus 149 ---~~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~~~~~~~~~~~~l~~l~~---~~~~~~~~LSgG~kqRv~ia~a 222 (313)
.+.+.+||||++.-.++..||.+.+..++...+.+. ...++.++|+.++. ..++++.+|||||+||++||+|
T Consensus 78 ~~~~~~VQmVFQDp~~SLnP~~tv~~~l~Epl~~~~~~~--~~~~i~~~L~~VgL~~~~l~R~P~eLSGGQ~QRiaIARA 155 (252)
T COG1124 78 KAFYRPVQMVFQDPYSSLNPRRTVGRILSEPLRPHGLSK--SQQRIAELLDQVGLPPSFLDRRPHELSGGQRQRIAIARA 155 (252)
T ss_pred hhhccceeEEecCCccccCcchhHHHHHhhhhccCCccH--HHHHHHHHHHHcCCCHHHHhcCchhcChhHHHHHHHHHH
Confidence 345899999999888888999999999887766554 34458899999994 4577888999999999999999
Q ss_pred hccCceEEEEcCCccccCh----hhHHHHHhhccc----eEEEEcChHHHHH---HHh----hcccccCCchHHHHH
Q 021362 223 VGLQHKVVIVDGNYLFLDG----GVWKDVSSMFDE----KWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAKW 284 (313)
Q Consensus 223 l~~~ar~Li~d~~~lllDE----~~~~~l~~l~~~----~i~vtHd~~~~~~---rv~----griv~~G~~~ev~~~ 284 (313)
++.++++||+|+++.-||- .+|+.+.++.++ .+|||||+..+.. |++ |++++.++..++...
T Consensus 156 L~~~PklLIlDEptSaLD~siQa~IlnlL~~l~~~~~lt~l~IsHdl~~v~~~cdRi~Vm~~G~ivE~~~~~~l~~~ 232 (252)
T COG1124 156 LIPEPKLLILDEPTSALDVSVQAQILNLLLELKKERGLTYLFISHDLALVEHMCDRIAVMDNGQIVEIGPTEELLSH 232 (252)
T ss_pred hccCCCEEEecCchhhhcHHHHHHHHHHHHHHHHhcCceEEEEeCcHHHHHHHhhheeeeeCCeEEEeechhhhhcC
Confidence 9999999999999999998 566666666554 3799999999998 766 999999998887543
|
|
| >COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-42 Score=301.85 Aligned_cols=188 Identities=16% Similarity=0.120 Sum_probs=158.0
Q ss_pred EEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCC---------
Q 021362 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK--------- 147 (313)
Q Consensus 77 ~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~--------- 147 (313)
+++++||+|.|+.....+.+|+++||+|++||+++|+|||||||||||++|.|+.+ |++|.|+++|++
T Consensus 1 ~i~~~~v~k~y~~~~~~~~~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld~---pt~G~v~i~g~d~~~l~~~~~ 77 (226)
T COG1136 1 MIELKNVSKIYGLGGEKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDK---PTSGEVLINGKDLTKLSEKEL 77 (226)
T ss_pred CcEEeeeEEEeccCCcceEecccceEEEcCCCEEEEECCCCCCHHHHHHHHhcccC---CCCceEEECCEEcCcCCHHHH
Confidence 47899999999765444669999999999999999999999999999999999999 999999999965
Q ss_pred ---CCCeEEEEecCCCCCCcccCCcccChHHHHHhcCCCCCccHHHHHHHHHHhhcC--CC-ccCCCCCCcCCCcchhhh
Q 021362 148 ---PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GS-VYAPSFDHGVGDPVEDDI 221 (313)
Q Consensus 148 ---~~~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~--~~-~~~~~LSgG~kqRv~ia~ 221 (313)
+.+.+|||||+...++ .+|+.||+.+++...+.+.....+++.++++.++.. .. +++.+|||||||||+|||
T Consensus 78 ~~~R~~~iGfvFQ~~nLl~--~ltv~ENv~lpl~~~~~~~~~~~~~~~~l~~~lgl~~~~~~~~p~eLSGGqqQRVAIAR 155 (226)
T COG1136 78 AKLRRKKIGFVFQNFNLLP--DLTVLENVELPLLIAGKSAGRRKRAAEELLEVLGLEDRLLKKKPSELSGGQQQRVAIAR 155 (226)
T ss_pred HHHHHHhEEEECccCCCCC--CCCHHHHHHhHHHHcCCChhHHHHHHHHHHHhcCChhhhccCCchhcCHHHHHHHHHHH
Confidence 2346999999954444 599999999998777665444566778888888843 34 456699999999999999
Q ss_pred hhccCceEEEEcCCccccCh----hhHHHHHhhccc----eEEEEcChHHHHH--HHh
Q 021362 222 LVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFDE----KWFIEVDLDTAMQ--RVL 269 (313)
Q Consensus 222 al~~~ar~Li~d~~~lllDE----~~~~~l~~l~~~----~i~vtHd~~~~~~--rv~ 269 (313)
|++.++++++.|+|+--||+ .+++.+.++.++ .++||||...+.. |++
T Consensus 156 AL~~~P~iilADEPTgnLD~~t~~~V~~ll~~~~~~~g~tii~VTHd~~lA~~~dr~i 213 (226)
T COG1136 156 ALINNPKIILADEPTGNLDSKTAKEVLELLRELNKERGKTIIMVTHDPELAKYADRVI 213 (226)
T ss_pred HHhcCCCeEEeeCccccCChHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHhCCEEE
Confidence 99999999999999999999 567777776543 4799999999987 554
|
|
| >COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.5e-42 Score=307.43 Aligned_cols=204 Identities=17% Similarity=0.210 Sum_probs=177.8
Q ss_pred cEEEEccceEEcccccc--------------------ccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccC
Q 021362 76 PVVEARCMDEVYDALAQ--------------------RLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIW 135 (313)
Q Consensus 76 ~~l~~~~l~~~y~~~~~--------------------~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~ 135 (313)
..|+++|++|.||.+.. .+..++|+||+|+.|||+.|+|-||||||||+|+|++|+.
T Consensus 3 ~~i~i~nv~kiFG~~~~~a~~~~~~G~~k~ei~~~tg~vvGv~~~sl~v~~GeIfViMGLSGSGKSTLvR~~NrLie--- 79 (386)
T COG4175 3 VKIEIKNVYKIFGKNPKRALKLLDQGKSKAEILKKTGLVVGVNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIE--- 79 (386)
T ss_pred ceEEeecceeecccCHHHHHHHHHcCCcHHHHHHhhCcEEeeccceeeecCCeEEEEEecCCCCHHHHHHHHhccCC---
Confidence 46999999999986532 2446899999999999999999999999999999999999
Q ss_pred CCCceeecCCCC------------CCCeEEEEecCCCCCCcccCCcccChHHHHHhcCCCCCccHHHHHHHHHHhh--cC
Q 021362 136 PQKASSFDSQVK------------PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLR--NQ 201 (313)
Q Consensus 136 p~~G~i~~~g~~------------~~~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~~~~~~~~~~~~l~~l~--~~ 201 (313)
|++|+|.++|.+ +++.+++|||....++ +.||.||..|++...|.++.+..+++.++|+.+| ..
T Consensus 80 pt~G~ilv~g~di~~~~~~~Lr~~Rr~~~sMVFQ~FaLlP--hrtVl~Nv~fGLev~Gv~~~er~~~a~~~l~~VgL~~~ 157 (386)
T COG4175 80 PTRGEILVDGKDIAKLSAAELRELRRKKISMVFQSFALLP--HRTVLENVAFGLEVQGVPKAEREERALEALELVGLEGY 157 (386)
T ss_pred CCCceEEECCcchhcCCHHHHHHHHhhhhhhhhhhhcccc--chhHhhhhhcceeecCCCHHHHHHHHHHHHHHcCchhh
Confidence 999999999987 3456999999944444 6999999999999999999999999999999999 45
Q ss_pred CCccCCCCCCcCCCcchhhhhhccCceEEEEcCCccccCh----hhHHHHHhh----ccceEEEEcChHHHHH---HHh-
Q 021362 202 GSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSM----FDEKWFIEVDLDTAMQ---RVL- 269 (313)
Q Consensus 202 ~~~~~~~LSgG~kqRv~ia~al~~~ar~Li~d~~~lllDE----~~~~~l~~l----~~~~i~vtHd~~~~~~---rv~- 269 (313)
.++++.+|||||||||.+|+|++.++.+|++|+++.-||+ ++.++|.++ .+.++|||||++++++ |+.
T Consensus 158 ~~~yp~eLSGGMqQRVGLARAla~~~~IlLMDEaFSALDPLIR~~mQdeLl~Lq~~l~KTIvFitHDLdEAlriG~rIai 237 (386)
T COG4175 158 ADKYPNELSGGMQQRVGLARALANDPDILLMDEAFSALDPLIRTEMQDELLELQAKLKKTIVFITHDLDEALRIGDRIAI 237 (386)
T ss_pred hhcCcccccchHHHHHHHHHHHccCCCEEEecCchhhcChHHHHHHHHHHHHHHHHhCCeEEEEecCHHHHHhccceEEE
Confidence 6778889999999999999999999999999999999999 444444444 3446799999999999 766
Q ss_pred ---hcccccCCchHHHHH
Q 021362 270 ---KRHISTGKPPDVAKW 284 (313)
Q Consensus 270 ---griv~~G~~~ev~~~ 284 (313)
|+++..|+|+|++..
T Consensus 238 mkdG~ivQ~Gtp~eIl~~ 255 (386)
T COG4175 238 MKDGEIVQVGTPEEILLN 255 (386)
T ss_pred ecCCeEEEeCCHHHHHcC
Confidence 999999999999754
|
|
| >COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-40 Score=306.01 Aligned_cols=201 Identities=18% Similarity=0.215 Sum_probs=177.1
Q ss_pred ccEEEEccceEEcc-ccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCCC----
Q 021362 75 IPVVEARCMDEVYD-ALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPP---- 149 (313)
Q Consensus 75 m~~l~~~~l~~~y~-~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~~---- 149 (313)
+.+++++||+|.|+ +.. +|+||||+|++|+++||+||||||||||+|+|+|+++ |++|+|.++|.+..
T Consensus 2 ~~~i~~~~l~k~~~~~~~----~l~~vs~~i~~Gei~gllG~NGAGKTTllk~l~gl~~---p~~G~i~i~G~~~~~~~~ 74 (293)
T COG1131 2 IEVIEVRNLTKKYGGDKT----ALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLK---PTSGEILVLGYDVVKEPA 74 (293)
T ss_pred CceeeecceEEEeCCCCE----EEeceeEEEcCCeEEEEECCCCCCHHHHHHHHhCCcC---CCceEEEEcCEeCccCHH
Confidence 34689999999999 577 9999999999999999999999999999999999999 99999999997643
Q ss_pred ---CeEEEEecCCCCCCcccCCcccChHHHHHhcCCCCCccHHHHHHHHHHhhcCC--CccCCCCCCcCCCcchhhhhhc
Q 021362 150 ---DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQG--SVYAPSFDHGVGDPVEDDILVG 224 (313)
Q Consensus 150 ---~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~--~~~~~~LSgG~kqRv~ia~al~ 224 (313)
+.+||++|++.+++ .+|++||+.+....++.+...+.+++.++++.+++.. ++++.+||+|||||+.||.||+
T Consensus 75 ~~~~~igy~~~~~~~~~--~lT~~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~lS~G~kqrl~ia~aL~ 152 (293)
T COG1131 75 KVRRRIGYVPQEPSLYP--ELTVRENLEFFARLYGLSKEEAEERIEELLELFGLEDKANKKVRTLSGGMKQRLSIALALL 152 (293)
T ss_pred HHHhheEEEccCCCCCc--cccHHHHHHHHHHHhCCChhHHHHHHHHHHHHcCCchhhCcchhhcCHHHHHHHHHHHHHh
Confidence 35999999976444 5999999999999888665556778999999999665 6678899999999999999999
Q ss_pred cCceEEEEcCCccccCh----hhHHHHHhhccc----eEEEEcChHHHHH---HHh----hcccccCCchHHHHH
Q 021362 225 LQHKVVIVDGNYLFLDG----GVWKDVSSMFDE----KWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAKW 284 (313)
Q Consensus 225 ~~ar~Li~d~~~lllDE----~~~~~l~~l~~~----~i~vtHd~~~~~~---rv~----griv~~G~~~ev~~~ 284 (313)
.+|++|++|+|+..||+ .+++.|+++.++ ++++||.++++.. |++ |++++.|++.++...
T Consensus 153 ~~P~lliLDEPt~GLDp~~~~~~~~~l~~l~~~g~~tvlissH~l~e~~~~~d~v~il~~G~~~~~g~~~~l~~~ 227 (293)
T COG1131 153 HDPELLILDEPTSGLDPESRREIWELLRELAKEGGVTILLSTHILEEAEELCDRVIILNDGKIIAEGTPEELKEK 227 (293)
T ss_pred cCCCEEEECCCCcCCCHHHHHHHHHHHHHHHhCCCcEEEEeCCcHHHHHHhCCEEEEEeCCEEEEeCCHHHHHHh
Confidence 99999999999999999 788888888764 3599999999998 555 999999988886544
|
|
| >COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-40 Score=293.59 Aligned_cols=202 Identities=14% Similarity=0.153 Sum_probs=177.6
Q ss_pred cEEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCC-------
Q 021362 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP------- 148 (313)
Q Consensus 76 ~~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~------- 148 (313)
++++++++++.|++. ..+|+++||+|++|++++|+|+||||||||+++++|+++ |++|.|.++|.+.
T Consensus 2 ~~i~~~~l~~~y~~~---~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~---p~~G~v~~~g~~~~~~~~~~ 75 (235)
T COG1122 2 RMIEAENLSFRYPGR---KAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLK---PTSGEVLVDGLDTSSEKSLL 75 (235)
T ss_pred ceEEEEEEEEEcCCC---ceeeeeeEEEECCCCEEEEECCCCCCHHHHHHHHcCcCc---CCCCEEEECCeeccchhhHH
Confidence 479999999999875 229999999999999999999999999999999999999 9999999999753
Q ss_pred --CCeEEEEecCCCCCCcccCCcccChHHHHHhcCCCCCccHHHHHHHHHHhh--cCCCccCCCCCCcCCCcchhhhhhc
Q 021362 149 --PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLR--NQGSVYAPSFDHGVGDPVEDDILVG 224 (313)
Q Consensus 149 --~~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~~~~~~~~~~~~l~~l~--~~~~~~~~~LSgG~kqRv~ia~al~ 224 (313)
.+.+|||||++..... .-||.+.++|+....+.+.++...++.++++.++ ...++.+.+|||||||||+||.+++
T Consensus 76 ~~~~~vG~VfQnpd~q~~-~~tV~~evafg~~n~g~~~~e~~~rv~~~l~~vgl~~~~~r~p~~LSGGqkqRvaIA~vLa 154 (235)
T COG1122 76 ELRQKVGLVFQNPDDQLF-GPTVEDEVAFGLENLGLPREEIEERVAEALELVGLEELLDRPPFNLSGGQKQRVAIAGVLA 154 (235)
T ss_pred HhhcceEEEEECcccccc-cCcHHHHHhhchhhcCCCHHHHHHHHHHHHHHcCchhhccCCccccCCcceeeHHhhHHHH
Confidence 4569999999865443 3599999999999999988778888999999998 3466777799999999999999999
Q ss_pred cCceEEEEcCCccccCh----hhHHHHHhhccc----eEEEEcChHHHHH---HHh----hcccccCCchHHHHH
Q 021362 225 LQHKVVIVDGNYLFLDG----GVWKDVSSMFDE----KWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAKW 284 (313)
Q Consensus 225 ~~ar~Li~d~~~lllDE----~~~~~l~~l~~~----~i~vtHd~~~~~~---rv~----griv~~G~~~ev~~~ 284 (313)
.++++|++|||+..||. .+++.++++..+ .|++|||++.+.. |++ |+++.+|+|.++..+
T Consensus 155 ~~P~iliLDEPta~LD~~~~~~l~~~l~~L~~~~~~tii~~tHd~~~~~~~ad~v~vl~~G~i~~~g~p~~i~~~ 229 (235)
T COG1122 155 MGPEILLLDEPTAGLDPKGRRELLELLKKLKEEGGKTIIIVTHDLELVLEYADRVVVLDDGKILADGDPAEIFND 229 (235)
T ss_pred cCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCCeEEEEeCcHHHHHhhCCEEEEEECCEEeecCCHHHHhhh
Confidence 99999999999999999 566666666544 5799999999998 555 999999999988775
|
|
| >COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-40 Score=281.05 Aligned_cols=200 Identities=13% Similarity=0.114 Sum_probs=167.0
Q ss_pred ccEEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCC-----CceeecCCCCC-
Q 021362 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQ-----KASSFDSQVKP- 148 (313)
Q Consensus 75 m~~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~-----~G~i~~~g~~~- 148 (313)
++.++++||++.||++. +|+|||++|+++++++|+||||||||||||+++.+.. .. +|+|.++|++.
T Consensus 5 ~~~~~~~~l~~yYg~~~----aL~~i~l~i~~~~VTAlIGPSGcGKST~LR~lNRmnd---l~~~~r~~G~v~~~g~ni~ 77 (253)
T COG1117 5 IPAIEVRDLNLYYGDKH----ALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMND---LIPGARVEGEVLLDGKNIY 77 (253)
T ss_pred cceeEecceeEEECchh----hhccCceeccCCceEEEECCCCcCHHHHHHHHHhhcc---cCcCceEEEEEEECCeecc
Confidence 35799999999999888 9999999999999999999999999999999999986 44 49999999773
Q ss_pred ---------CCeEEEEecCCCCCCcccCCcccChHHHHHhcCCCCCccHHHHHHHHHHhh------cCCCccCCCCCCcC
Q 021362 149 ---------PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLR------NQGSVYAPSFDHGV 213 (313)
Q Consensus 149 ---------~~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~~~~~~~~~~~~l~~l~------~~~~~~~~~LSgG~ 213 (313)
++++|+|||.+..++ ++++||+.++.+.+|.....-.+.+++.|+... +..+.....|||||
T Consensus 78 ~~~~d~~~lRr~vGMVFQkPnPFp---~SIydNVayG~r~~g~~~~~ldeiVe~sLk~AaLWdEVKDrL~~sa~~LSGGQ 154 (253)
T COG1117 78 DPKVDVVELRRRVGMVFQKPNPFP---MSIYDNVAYGLRLHGIKDKELDEIVESSLKKAALWDEVKDRLHKSALGLSGGQ 154 (253)
T ss_pred CCCCCHHHHHHHheeeccCCCCCC---chHHHHHHHhHHhhccchHHHHHHHHHHHHHhHhHHHhHHHhhCCccCCChhH
Confidence 346999999987554 899999999999888765444555666666544 34455666999999
Q ss_pred CCcchhhhhhccCceEEEEcCCccccCh----hhHHHHHhhccc--eEEEEcChHHHHH---HHh----hcccccCCchH
Q 021362 214 GDPVEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFDE--KWFIEVDLDTAMQ---RVL----KRHISTGKPPD 280 (313)
Q Consensus 214 kqRv~ia~al~~~ar~Li~d~~~lllDE----~~~~~l~~l~~~--~i~vtHd~~~~~~---rv~----griv~~G~~~e 280 (313)
|||++|||+++.++.+|++|+|+.-||+ ++-+.|.++.++ +++|||+|..|.+ +.. |++++.|++++
T Consensus 155 QQRLcIARalAv~PeVlLmDEPtSALDPIsT~kIEeLi~eLk~~yTIviVTHnmqQAaRvSD~taFf~~G~LvE~g~T~~ 234 (253)
T COG1117 155 QQRLCIARALAVKPEVLLMDEPTSALDPISTLKIEELITELKKKYTIVIVTHNMQQAARVSDYTAFFYLGELVEFGPTDK 234 (253)
T ss_pred HHHHHHHHHHhcCCcEEEecCcccccCchhHHHHHHHHHHHHhccEEEEEeCCHHHHHHHhHhhhhhcccEEEEEcCHHh
Confidence 9999999999999999999999999999 455555555544 4799999999988 333 99999999999
Q ss_pred HHHH
Q 021362 281 VAKW 284 (313)
Q Consensus 281 v~~~ 284 (313)
+...
T Consensus 235 iF~~ 238 (253)
T COG1117 235 IFTN 238 (253)
T ss_pred hhcC
Confidence 8643
|
|
| >COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-40 Score=283.43 Aligned_cols=200 Identities=18% Similarity=0.147 Sum_probs=175.2
Q ss_pred EEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCC-------C
Q 021362 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP-------P 149 (313)
Q Consensus 77 ~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~-------~ 149 (313)
||++.+++|+|+... .+++||||++++|+++||+|||||||||+||+|++++. |++|.|+++|.+. +
T Consensus 1 Ml~v~~l~K~y~~~v---~AvrdVSF~ae~Gei~GlLG~NGAGKTT~LRmiatlL~---P~~G~v~idg~d~~~~p~~vr 74 (245)
T COG4555 1 MLEVTDLTKSYGSKV---QAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLI---PDSGKVTIDGVDTVRDPSFVR 74 (245)
T ss_pred CeeeeehhhhccCHH---hhhhheeEEeccceEEEEEcCCCCCchhHHHHHHHhcc---CCCceEEEeecccccChHHHh
Confidence 589999999999854 38999999999999999999999999999999999999 9999999999773 3
Q ss_pred CeEEEEecCCCCCCcccCCcccChHHHHHhcCCCCCccHHHHHHHHHHhh--cCCCccCCCCCCcCCCcchhhhhhccCc
Q 021362 150 DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLR--NQGSVYAPSFDHGVGDPVEDDILVGLQH 227 (313)
Q Consensus 150 ~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~~~~~~~~~~~~l~~l~--~~~~~~~~~LSgG~kqRv~ia~al~~~a 227 (313)
+.+|+++-. ..++. .||++||+.|..+++++...+...+..++.+.|+ ...++++.+||.||||||+||+|++++|
T Consensus 75 r~IGVl~~e-~glY~-RlT~rEnl~~Fa~L~~l~~~~~kari~~l~k~l~l~~~~~rRv~~~S~G~kqkV~iARAlvh~P 152 (245)
T COG4555 75 RKIGVLFGE-RGLYA-RLTARENLKYFARLNGLSRKEIKARIAELSKRLQLLEYLDRRVGEFSTGMKQKVAIARALVHDP 152 (245)
T ss_pred hhcceecCC-cChhh-hhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhChHHHHHHHHhhhchhhHHHHHHHHHHhcCC
Confidence 468988844 33333 5999999999999999988888888999999988 4578899999999999999999999999
Q ss_pred eEEEEcCCccccCh----hhHHHHHhhccc---eEEEEcChHHHHH---HHh----hcccccCCchHHHHH
Q 021362 228 KVVIVDGNYLFLDG----GVWKDVSSMFDE---KWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAKW 284 (313)
Q Consensus 228 r~Li~d~~~lllDE----~~~~~l~~l~~~---~i~vtHd~~~~~~---rv~----griv~~G~~~ev~~~ 284 (313)
+++++|+|+..||- .+.+.|.++..+ ++|.||+|+++.. |++ |.++..|.++++...
T Consensus 153 ~i~vlDEP~sGLDi~~~r~~~dfi~q~k~egr~viFSSH~m~EvealCDrvivlh~Gevv~~gs~~~l~~r 223 (245)
T COG4555 153 SILVLDEPTSGLDIRTRRKFHDFIKQLKNEGRAVIFSSHIMQEVEALCDRVIVLHKGEVVLEGSIEALDAR 223 (245)
T ss_pred CeEEEcCCCCCccHHHHHHHHHHHHHhhcCCcEEEEecccHHHHHHhhheEEEEecCcEEEcCCHHHHHHH
Confidence 99999999999998 556666666554 4799999999997 666 999999999888665
|
|
| >PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-40 Score=311.42 Aligned_cols=201 Identities=15% Similarity=0.175 Sum_probs=170.3
Q ss_pred CccEEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCC-----
Q 021362 74 EIPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP----- 148 (313)
Q Consensus 74 ~m~~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~----- 148 (313)
+|++|+++|+++.|++.. +|+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.+.
T Consensus 3 ~~~~l~~~~l~~~~~~~~----~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~---p~~G~I~~~g~~i~~~~~ 75 (351)
T PRK11432 3 QKNFVVLKNITKRFGSNT----VIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEK---PTEGQIFIDGEDVTHRSI 75 (351)
T ss_pred CCcEEEEEeEEEEECCeE----EEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHHCCCC---CCceEEEECCEECCCCCH
Confidence 467899999999998766 9999999999999999999999999999999999999 9999999999653
Q ss_pred -CCeEEEEecCCCCCCcccCCcccChHHHHHhcCCCCCccHHHHHHHHHHhhc--CCCccCCCCCCcCCCcchhhhhhcc
Q 021362 149 -PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDILVGL 225 (313)
Q Consensus 149 -~~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~~~~~~~~~~~~l~~l~~--~~~~~~~~LSgG~kqRv~ia~al~~ 225 (313)
.+.++|+||+...++ ++|++||+.++...++.+..+..+++.++++.++. ..++++.+|||||||||+||+|++.
T Consensus 76 ~~r~ig~vfQ~~~lfp--~~tv~eNi~~~l~~~~~~~~~~~~~v~~~l~~~gl~~~~~r~~~~LSgGq~QRVaLARaL~~ 153 (351)
T PRK11432 76 QQRDICMVFQSYALFP--HMSLGENVGYGLKMLGVPKEERKQRVKEALELVDLAGFEDRYVDQISGGQQQRVALARALIL 153 (351)
T ss_pred HHCCEEEEeCCcccCC--CCCHHHHHHHHHhHcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHc
Confidence 256999999965443 58999999998766555544456678889998884 3567788999999999999999999
Q ss_pred CceEEEEcCCccccCh----hhHHHHHhhcc----ceEEEEcChHHHHH---HHh----hcccccCCchHHHH
Q 021362 226 QHKVVIVDGNYLFLDG----GVWKDVSSMFD----EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAK 283 (313)
Q Consensus 226 ~ar~Li~d~~~lllDE----~~~~~l~~l~~----~~i~vtHd~~~~~~---rv~----griv~~G~~~ev~~ 283 (313)
++++|++|+|+..||. .+++.|+++.+ ..++||||++++.. |++ |+++..|+++++..
T Consensus 154 ~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~e~~~laD~i~vm~~G~i~~~g~~~~~~~ 226 (351)
T PRK11432 154 KPKVLLFDEPLSNLDANLRRSMREKIRELQQQFNITSLYVTHDQSEAFAVSDTVIVMNKGKIMQIGSPQELYR 226 (351)
T ss_pred CCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 9999999999999999 44455555433 24799999999977 665 99999999988854
|
|
| >TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-40 Score=311.07 Aligned_cols=200 Identities=14% Similarity=0.168 Sum_probs=170.6
Q ss_pred ccEEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCCC-----
Q 021362 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPP----- 149 (313)
Q Consensus 75 m~~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~~----- 149 (313)
|++|+++|+++.|++.. +|+|+||++++||+++|+||||||||||+++|+|+++ |++|+|.++|++..
T Consensus 2 ~~~l~~~~l~~~~~~~~----~l~~vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~~---p~~G~I~i~g~~~~~~~~~ 74 (353)
T TIGR03265 2 SPYLSIDNIRKRFGAFT----ALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLER---QTAGTIYQGGRDITRLPPQ 74 (353)
T ss_pred CcEEEEEEEEEEeCCeE----EEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCC---CCceEEEECCEECCCCCHH
Confidence 56899999999998766 9999999999999999999999999999999999999 99999999996532
Q ss_pred -CeEEEEecCCCCCCcccCCcccChHHHHHhcCCCCCccHHHHHHHHHHhhc--CCCccCCCCCCcCCCcchhhhhhccC
Q 021362 150 -DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDILVGLQ 226 (313)
Q Consensus 150 -~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~~~~~~~~~~~~l~~l~~--~~~~~~~~LSgG~kqRv~ia~al~~~ 226 (313)
+.++|+||+...++ ++|++||+.++...++.+..+...++.++++.++. ..++++.+|||||||||+||+|++.+
T Consensus 75 ~r~ig~v~Q~~~lfp--~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~l~L~~~~~~~~~~LSgGq~QRvaLARaL~~~ 152 (353)
T TIGR03265 75 KRDYGIVFQSYALFP--NLTVADNIAYGLKNRGMGRAEVAERVAELLDLVGLPGSERKYPGQLSGGQQQRVALARALATS 152 (353)
T ss_pred HCCEEEEeCCcccCC--CCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCchhhCChhhCCHHHHHHHHHHHHHhcC
Confidence 45999999955443 59999999998766555444456678899999884 35678889999999999999999999
Q ss_pred ceEEEEcCCccccCh----hhHHHHHhhccc----eEEEEcChHHHHH---HHh----hcccccCCchHHHH
Q 021362 227 HKVVIVDGNYLFLDG----GVWKDVSSMFDE----KWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAK 283 (313)
Q Consensus 227 ar~Li~d~~~lllDE----~~~~~l~~l~~~----~i~vtHd~~~~~~---rv~----griv~~G~~~ev~~ 283 (313)
+++|++|+|+..||. .+++.|+++.++ .|+||||++++.. |++ |++++.|+++++..
T Consensus 153 P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~~~tvi~vTHd~~ea~~l~d~i~vl~~G~i~~~g~~~~~~~ 224 (353)
T TIGR03265 153 PGLLLLDEPLSALDARVREHLRTEIRQLQRRLGVTTIMVTHDQEEALSMADRIVVMNHGVIEQVGTPQEIYR 224 (353)
T ss_pred CCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 999999999999999 455555555432 4799999999987 555 99999999988864
|
This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely. |
| >PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-40 Score=312.81 Aligned_cols=200 Identities=16% Similarity=0.122 Sum_probs=169.0
Q ss_pred ccEEEEccceEEc-cccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCC-----
Q 021362 75 IPVVEARCMDEVY-DALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP----- 148 (313)
Q Consensus 75 m~~l~~~~l~~~y-~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~----- 148 (313)
|.+|+++|+++.| ++.. +|+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.+.
T Consensus 1 m~~l~i~~l~~~~~~~~~----~l~~vsl~i~~Ge~~~llG~sGsGKSTLLr~iaGl~~---p~~G~I~~~g~~i~~~~~ 73 (356)
T PRK11650 1 MAGLKLQAVRKSYDGKTQ----VIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLER---ITSGEIWIGGRVVNELEP 73 (356)
T ss_pred CCEEEEEeEEEEeCCCCE----EEeeeeEEEcCCCEEEEECCCCCcHHHHHHHHHCCCC---CCceEEEECCEECCCCCH
Confidence 4579999999999 6655 9999999999999999999999999999999999999 9999999999753
Q ss_pred -CCeEEEEecCCCCCCcccCCcccChHHHHHhcCCCCCccHHHHHHHHHHhhc--CCCccCCCCCCcCCCcchhhhhhcc
Q 021362 149 -PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDILVGL 225 (313)
Q Consensus 149 -~~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~~~~~~~~~~~~l~~l~~--~~~~~~~~LSgG~kqRv~ia~al~~ 225 (313)
.+.++|+||+...++ ++||+||+.++...++.+.....+++.++++.++. ..++++.+|||||||||+||+|++.
T Consensus 74 ~~r~ig~v~Q~~~lfp--~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~QRvalARAL~~ 151 (356)
T PRK11650 74 ADRDIAMVFQNYALYP--HMSVRENMAYGLKIRGMPKAEIEERVAEAARILELEPLLDRKPRELSGGQRQRVAMGRAIVR 151 (356)
T ss_pred HHCCEEEEeCCccccC--CCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChhHhhCChhhCCHHHHHHHHHHHHHhc
Confidence 246999999965443 59999999998765554444445678889998884 4567788999999999999999999
Q ss_pred CceEEEEcCCccccCh----hhHHHHHhhccc----eEEEEcChHHHHH---HHh----hcccccCCchHHHH
Q 021362 226 QHKVVIVDGNYLFLDG----GVWKDVSSMFDE----KWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAK 283 (313)
Q Consensus 226 ~ar~Li~d~~~lllDE----~~~~~l~~l~~~----~i~vtHd~~~~~~---rv~----griv~~G~~~ev~~ 283 (313)
++++|++|+|+..||. .+++.|+++.++ .|+||||++++.. |++ |++++.|+++++..
T Consensus 152 ~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~ea~~l~D~i~vl~~G~i~~~g~~~~~~~ 224 (356)
T PRK11650 152 EPAVFLFDEPLSNLDAKLRVQMRLEIQRLHRRLKTTSLYVTHDQVEAMTLADRVVVMNGGVAEQIGTPVEVYE 224 (356)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEECCHHHHHh
Confidence 9999999999999998 455556555442 4799999999987 554 99999999998854
|
|
| >COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-41 Score=286.56 Aligned_cols=202 Identities=17% Similarity=0.222 Sum_probs=172.5
Q ss_pred ccEEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCCCC----
Q 021362 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPD---- 150 (313)
Q Consensus 75 m~~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~~~---- 150 (313)
|.+|.++||.|+|+++. ++++|||+|++||+|||+|||||||||.+.++.|+.+ |++|.|.+++.+...
T Consensus 2 ~~~L~a~~l~K~y~kr~----Vv~~Vsl~v~~GEiVGLLGPNGAGKTT~Fymi~Glv~---~d~G~i~ld~~diT~lPm~ 74 (243)
T COG1137 2 MSTLVAENLAKSYKKRK----VVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVR---PDSGKILLDDEDITKLPMH 74 (243)
T ss_pred CcEEEehhhhHhhCCee----eeeeeeEEEcCCcEEEEECCCCCCceeEEEEEEEEEe---cCCceEEECCcccccCChH
Confidence 56899999999999988 9999999999999999999999999999999999999 999999999988543
Q ss_pred -----eEEEEecCCCCCCcccCCcccChHHHHHhcCCCCC--ccHHHHHHHHHHhh--cCCCccCCCCCCcCCCcchhhh
Q 021362 151 -----VATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWT--FNPLLLLNCLKNLR--NQGSVYAPSFDHGVGDPVEDDI 221 (313)
Q Consensus 151 -----~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~~~--~~~~~~~~~l~~l~--~~~~~~~~~LSgG~kqRv~ia~ 221 (313)
-+||++|++..+- .+||.||+...+..+..... +...++.++|+.|. ...+.+..+||||||+|+.||+
T Consensus 75 ~RArlGigYLpQE~SIFr--~LtV~dNi~~vlE~~~~d~~~~~~~~~l~~LL~ef~i~hlr~~~a~sLSGGERRR~EIAR 152 (243)
T COG1137 75 KRARLGIGYLPQEASIFR--KLTVEDNIMAVLEIREKDLKKAERKEELDALLEEFHITHLRDSKAYSLSGGERRRVEIAR 152 (243)
T ss_pred HHhhcCcccccccchHhh--cCcHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHhchHHHhcCcccccccchHHHHHHHH
Confidence 3899999976544 59999999998887654333 44455778999888 4466777799999999999999
Q ss_pred hhccCceEEEEcCCccccCh----hhHHHHHhhccce---EEEEcChHHHHH---HHh----hcccccCCchHHHHHH
Q 021362 222 LVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFDEK---WFIEVDLDTAMQ---RVL----KRHISTGKPPDVAKWR 285 (313)
Q Consensus 222 al~~~ar~Li~d~~~lllDE----~~~~~l~~l~~~~---i~vtHd~~~~~~---rv~----griv~~G~~~ev~~~~ 285 (313)
|++.+++.+++|+|+...|+ ++.+.|+.+.+.+ ++.+|+..+.+. |.. |++++.|+|++++...
T Consensus 153 aLa~~P~fiLLDEPFAGVDPiaV~dIq~iI~~L~~rgiGvLITDHNVREtL~i~dRaYIi~~G~vla~G~p~ei~~n~ 230 (243)
T COG1137 153 ALAANPKFILLDEPFAGVDPIAVIDIQRIIKHLKDRGIGVLITDHNVRETLDICDRAYIISDGKVLAEGSPEEIVNNE 230 (243)
T ss_pred HHhcCCCEEEecCCccCCCchhHHHHHHHHHHHHhCCceEEEccccHHHHHhhhheEEEEecCeEEecCCHHHHhcCh
Confidence 99999999999999999999 5666666666654 477799999887 443 9999999999998653
|
|
| >TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-39 Score=306.93 Aligned_cols=202 Identities=15% Similarity=0.129 Sum_probs=168.2
Q ss_pred EEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCC--------
Q 021362 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP-------- 148 (313)
Q Consensus 77 ~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~-------- 148 (313)
||+++|++|.|++......+|+|+||+|++||++||+||||||||||+|+|+|+++ |++|+|.++|.+.
T Consensus 1 mI~~~~lsk~y~~~~~~~~~L~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl~~---p~~G~I~i~G~~i~~~~~~~l 77 (343)
T TIGR02314 1 MIKLSNITKVFHQGTKTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLER---PTSGSVIVDGQDLTTLSNSEL 77 (343)
T ss_pred CEEEEEEEEEECCCCcceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC---CCceEEEECCEECCcCCHHHH
Confidence 48999999999632112349999999999999999999999999999999999999 9999999999753
Q ss_pred ---CCeEEEEecCCCCCCcccCCcccChHHHHHhcCCCCCccHHHHHHHHHHhhc--CCCccCCCCCCcCCCcchhhhhh
Q 021362 149 ---PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDILV 223 (313)
Q Consensus 149 ---~~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~~~~~~~~~~~~l~~l~~--~~~~~~~~LSgG~kqRv~ia~al 223 (313)
.+.++|+||+...+. .+|++||+.++....+.+.....+++.++++.++. ..++++.+|||||||||+||+|+
T Consensus 78 ~~~r~~Ig~v~Q~~~l~~--~~tv~eni~~~~~~~~~~~~~~~~~v~e~l~~vgL~~~~~~~~~~LSgGqkQRV~IARAL 155 (343)
T TIGR02314 78 TKARRQIGMIFQHFNLLS--SRTVFGNVALPLELDNTPKDEIKRKVTELLALVGLGDKHDSYPSNLSGGQKQRVAIARAL 155 (343)
T ss_pred HHHhcCEEEEECCccccc--cCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHH
Confidence 236999999965433 48999999998765555544556678899999884 45677889999999999999999
Q ss_pred ccCceEEEEcCCccccCh----hhHHHHHhhccc----eEEEEcChHHHHH---HHh----hcccccCCchHHHH
Q 021362 224 GLQHKVVIVDGNYLFLDG----GVWKDVSSMFDE----KWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAK 283 (313)
Q Consensus 224 ~~~ar~Li~d~~~lllDE----~~~~~l~~l~~~----~i~vtHd~~~~~~---rv~----griv~~G~~~ev~~ 283 (313)
+.++++|++|+++..||. .+++.|+++.++ .+++|||++.+.+ |++ |++++.|++.++..
T Consensus 156 ~~~P~iLLlDEPts~LD~~t~~~i~~lL~~l~~~~g~tiiliTH~~~~v~~~~d~v~vl~~G~iv~~g~~~~v~~ 230 (343)
T TIGR02314 156 ASNPKVLLCDEATSALDPATTQSILELLKEINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQGTVSEIFS 230 (343)
T ss_pred HhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHc
Confidence 999999999999999999 566666666432 4799999999977 665 99999999988753
|
Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria. |
| >PRK13537 nodulation ABC transporter NodI; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-39 Score=301.89 Aligned_cols=200 Identities=18% Similarity=0.168 Sum_probs=170.5
Q ss_pred cEEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCCC------
Q 021362 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPP------ 149 (313)
Q Consensus 76 ~~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~~------ 149 (313)
++|+++||+|.|++.. +|+|+||+|++||++||+||||||||||+++|+|+++ |++|+|.++|.+..
T Consensus 6 ~~i~i~~l~k~~~~~~----~l~~vsl~i~~Gei~gllGpNGaGKSTLl~~l~Gl~~---p~~G~v~i~G~~~~~~~~~~ 78 (306)
T PRK13537 6 APIDFRNVEKRYGDKL----VVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTH---PDAGSISLCGEPVPSRARHA 78 (306)
T ss_pred ceEEEEeEEEEECCeE----EEecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCCC---CCceEEEECCEecccchHHH
Confidence 4799999999998766 9999999999999999999999999999999999999 99999999997642
Q ss_pred -CeEEEEecCCCCCCcccCCcccChHHHHHhcCCCCCccHHHHHHHHHHhhc--CCCccCCCCCCcCCCcchhhhhhccC
Q 021362 150 -DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDILVGLQ 226 (313)
Q Consensus 150 -~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~~~~~~~~~~~~l~~l~~--~~~~~~~~LSgG~kqRv~ia~al~~~ 226 (313)
+.++|++|++..++ .+|++||+.+....++.+......++.++++.++. ..++++.+||+|||||++||+|++++
T Consensus 79 ~~~ig~v~q~~~~~~--~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~aL~~~ 156 (306)
T PRK13537 79 RQRVGVVPQFDNLDP--DFTVRENLLVFGRYFGLSAAAARALVPPLLEFAKLENKADAKVGELSGGMKRRLTLARALVND 156 (306)
T ss_pred HhcEEEEeccCcCCC--CCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchHhcCchhhCCHHHHHHHHHHHHHhCC
Confidence 46999999965443 48999999987666665444445567788888874 34667889999999999999999999
Q ss_pred ceEEEEcCCccccCh----hhHHHHHhhccc---eEEEEcChHHHHH---HHh----hcccccCCchHHHHH
Q 021362 227 HKVVIVDGNYLFLDG----GVWKDVSSMFDE---KWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAKW 284 (313)
Q Consensus 227 ar~Li~d~~~lllDE----~~~~~l~~l~~~---~i~vtHd~~~~~~---rv~----griv~~G~~~ev~~~ 284 (313)
+++|++|+|+..||. .+++.|+++.++ .+++||+++++.. |++ |++++.|+++++...
T Consensus 157 P~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~till~sH~l~e~~~~~d~i~il~~G~i~~~g~~~~l~~~ 228 (306)
T PRK13537 157 PDVLVLDEPTTGLDPQARHLMWERLRSLLARGKTILLTTHFMEEAERLCDRLCVIEEGRKIAEGAPHALIES 228 (306)
T ss_pred CCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEECCHHHHHhc
Confidence 999999999999999 677777777543 4699999999977 655 999999999988654
|
|
| >PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-39 Score=307.85 Aligned_cols=200 Identities=17% Similarity=0.194 Sum_probs=168.4
Q ss_pred ccEEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCC------
Q 021362 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP------ 148 (313)
Q Consensus 75 m~~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~------ 148 (313)
+++|+++|+++.|++.. +|+++||++++||+++|+||||||||||+++|+|+++ |++|+|.++|.+.
T Consensus 12 ~~~L~l~~l~~~~~~~~----~l~~vsl~i~~Ge~~~LlGpsGsGKSTLLr~IaGl~~---p~~G~I~~~g~~i~~~~~~ 84 (375)
T PRK09452 12 SPLVELRGISKSFDGKE----VISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFET---PDSGRIMLDGQDITHVPAE 84 (375)
T ss_pred CceEEEEEEEEEECCeE----EEeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCC---CCceEEEECCEECCCCCHH
Confidence 45799999999998766 9999999999999999999999999999999999999 9999999999753
Q ss_pred CCeEEEEecCCCCCCcccCCcccChHHHHHhcCCCCCccHHHHHHHHHHhhc--CCCccCCCCCCcCCCcchhhhhhccC
Q 021362 149 PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDILVGLQ 226 (313)
Q Consensus 149 ~~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~~~~~~~~~~~~l~~l~~--~~~~~~~~LSgG~kqRv~ia~al~~~ 226 (313)
.+.++|+||+...++ ++||+||+.++...++.+.....+++.++++.++. ..++++.+|||||||||+||+|++.+
T Consensus 85 ~r~ig~vfQ~~~lfp--~ltv~eNi~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~p~~LSgGq~QRVaLARaL~~~ 162 (375)
T PRK09452 85 NRHVNTVFQSYALFP--HMTVFENVAFGLRMQKTPAAEITPRVMEALRMVQLEEFAQRKPHQLSGGQQQRVAIARAVVNK 162 (375)
T ss_pred HCCEEEEecCcccCC--CCCHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHhcC
Confidence 245999999965443 58999999998765554443345577888888884 35677789999999999999999999
Q ss_pred ceEEEEcCCccccCh----hhHHHHHhhccc----eEEEEcChHHHHH---HHh----hcccccCCchHHHH
Q 021362 227 HKVVIVDGNYLFLDG----GVWKDVSSMFDE----KWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAK 283 (313)
Q Consensus 227 ar~Li~d~~~lllDE----~~~~~l~~l~~~----~i~vtHd~~~~~~---rv~----griv~~G~~~ev~~ 283 (313)
+++|++|+|+..||. .+++.|+++.++ .|+||||++++.. |++ |+++..|++.++..
T Consensus 163 P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tiI~vTHd~~ea~~laDri~vl~~G~i~~~g~~~~i~~ 234 (375)
T PRK09452 163 PKVLLLDESLSALDYKLRKQMQNELKALQRKLGITFVFVTHDQEEALTMSDRIVVMRDGRIEQDGTPREIYE 234 (375)
T ss_pred CCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 999999999999999 455555555432 4799999999887 655 99999999988854
|
|
| >PRK11607 potG putrescine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-39 Score=306.10 Aligned_cols=200 Identities=15% Similarity=0.172 Sum_probs=168.2
Q ss_pred ccEEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCC------
Q 021362 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP------ 148 (313)
Q Consensus 75 m~~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~------ 148 (313)
+++|+++|++|.|++.. +|+++||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.+.
T Consensus 17 ~~~l~l~~v~~~~~~~~----~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~---p~~G~I~i~g~~i~~~~~~ 89 (377)
T PRK11607 17 TPLLEIRNLTKSFDGQH----AVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQ---PTAGQIMLDGVDLSHVPPY 89 (377)
T ss_pred CceEEEEeEEEEECCEE----EEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC---CCceEEEECCEECCCCCHH
Confidence 45899999999998766 9999999999999999999999999999999999999 9999999999753
Q ss_pred CCeEEEEecCCCCCCcccCCcccChHHHHHhcCCCCCccHHHHHHHHHHhhc--CCCccCCCCCCcCCCcchhhhhhccC
Q 021362 149 PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDILVGLQ 226 (313)
Q Consensus 149 ~~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~~~~~~~~~~~~l~~l~~--~~~~~~~~LSgG~kqRv~ia~al~~~ 226 (313)
.+.++|+||+...++ ++|+.||+.++....+.+..+..+++.++++.++. ..++++.+|||||||||+||+|++.+
T Consensus 90 ~r~ig~vfQ~~~lfp--~ltv~eNi~~~l~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~~~LSgGq~QRVaLARAL~~~ 167 (377)
T PRK11607 90 QRPINMMFQSYALFP--HMTVEQNIAFGLKQDKLPKAEIASRVNEMLGLVHMQEFAKRKPHQLSGGQRQRVALARSLAKR 167 (377)
T ss_pred HCCEEEEeCCCccCC--CCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcC
Confidence 246999999965443 59999999998765554444445677888888884 35677889999999999999999999
Q ss_pred ceEEEEcCCccccChhhH----HHHHhhccc----eEEEEcChHHHHH---HHh----hcccccCCchHHHH
Q 021362 227 HKVVIVDGNYLFLDGGVW----KDVSSMFDE----KWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAK 283 (313)
Q Consensus 227 ar~Li~d~~~lllDE~~~----~~l~~l~~~----~i~vtHd~~~~~~---rv~----griv~~G~~~ev~~ 283 (313)
+++|++|+|+..||.... +.|+++.++ .|+||||++++.. |++ |+++..|+++++..
T Consensus 168 P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~ea~~laDri~vl~~G~i~~~g~~~~~~~ 239 (377)
T PRK11607 168 PKLLLLDEPMGALDKKLRDRMQLEVVDILERVGVTCVMVTHDQEEAMTMAGRIAIMNRGKFVQIGEPEEIYE 239 (377)
T ss_pred CCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEeCCEEEEEcCHHHHHh
Confidence 999999999999999443 444454332 4799999999887 655 99999999998864
|
|
| >PRK13536 nodulation factor exporter subunit NodI; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-39 Score=303.18 Aligned_cols=201 Identities=18% Similarity=0.178 Sum_probs=170.2
Q ss_pred ccEEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCC------
Q 021362 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP------ 148 (313)
Q Consensus 75 m~~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~------ 148 (313)
+++|+++||+|.|++.. +|+|+||+|++|+++||+||||||||||+++|+|+++ |++|+|.++|.+.
T Consensus 39 ~~~i~i~nl~k~y~~~~----~l~~is~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl~~---p~~G~i~i~G~~~~~~~~~ 111 (340)
T PRK13536 39 TVAIDLAGVSKSYGDKA----VVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTS---PDAGKITVLGVPVPARARL 111 (340)
T ss_pred ceeEEEEEEEEEECCEE----EEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCC---CCceEEEECCEECCcchHH
Confidence 45899999999999876 9999999999999999999999999999999999999 9999999999763
Q ss_pred -CCeEEEEecCCCCCCcccCCcccChHHHHHhcCCCCCccHHHHHHHHHHhhcC--CCccCCCCCCcCCCcchhhhhhcc
Q 021362 149 -PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGL 225 (313)
Q Consensus 149 -~~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~~~~~LSgG~kqRv~ia~al~~ 225 (313)
.+.++|++|+...+. .+|+.||+.+....++.+.....+++.++++.++.. .++++.+||+|||||++||+|+++
T Consensus 112 ~~~~ig~v~q~~~~~~--~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~L~~~~~~~~~~LS~G~kqrv~lA~aL~~ 189 (340)
T PRK13536 112 ARARIGVVPQFDNLDL--EFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLESKADARVSDLSGGMKRRLTLARALIN 189 (340)
T ss_pred HhccEEEEeCCccCCC--CCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhCCChhhCCHHHHHHHHHHHHHhc
Confidence 245999999965433 489999998766555544333445667888888743 577888999999999999999999
Q ss_pred CceEEEEcCCccccCh----hhHHHHHhhccc---eEEEEcChHHHHH---HHh----hcccccCCchHHHHH
Q 021362 226 QHKVVIVDGNYLFLDG----GVWKDVSSMFDE---KWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAKW 284 (313)
Q Consensus 226 ~ar~Li~d~~~lllDE----~~~~~l~~l~~~---~i~vtHd~~~~~~---rv~----griv~~G~~~ev~~~ 284 (313)
++++|++|+|+..||+ .+++.|+++.+. ++++||+++++.. |++ |++++.|+++++...
T Consensus 190 ~P~lLiLDEPt~gLD~~~r~~l~~~l~~l~~~g~tilisSH~l~e~~~~~d~i~il~~G~i~~~g~~~~l~~~ 262 (340)
T PRK13536 190 DPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFMEEAERLCDRLCVLEAGRKIAEGRPHALIDE 262 (340)
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhh
Confidence 9999999999999999 667777776443 4799999999987 655 999999999998654
|
|
| >COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-39 Score=284.62 Aligned_cols=200 Identities=20% Similarity=0.195 Sum_probs=167.0
Q ss_pred cEEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCCCC-----
Q 021362 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPD----- 150 (313)
Q Consensus 76 ~~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~~~----- 150 (313)
+++++++|+|.||+.. +++||||++++||++||+||||||||||+|+|+|+++ |++|+|.++|+++..
T Consensus 3 ~lL~v~~l~k~FGGl~----Al~~Vsl~v~~Gei~~LIGPNGAGKTTlfNlitG~~~---P~~G~v~~~G~~it~l~p~~ 75 (250)
T COG0411 3 PLLEVRGLSKRFGGLT----AVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYK---PSSGTVIFRGRDITGLPPHR 75 (250)
T ss_pred ceeeeccceeecCCEE----EEeceeEEEcCCeEEEEECCCCCCceeeeeeeccccc---CCCceEEECCcccCCCCHHH
Confidence 5799999999999998 9999999999999999999999999999999999999 999999999987432
Q ss_pred ----eEEEEecCCCCCCcccCCcccChHHHHHhc-------CC-----CCCccHHHHHHHHHHhhc--CCCccCCCCCCc
Q 021362 151 ----VATVLPMDGFHLYLSQLDAMEDPKEAHARR-------GA-----PWTFNPLLLLNCLKNLRN--QGSVYAPSFDHG 212 (313)
Q Consensus 151 ----~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~-------~~-----~~~~~~~~~~~~l~~l~~--~~~~~~~~LSgG 212 (313)
-++--||....+. .|||.||+..+...+ +. ..++..+++.++|+.+++ ..+.+..+||+|
T Consensus 76 iar~Gi~RTFQ~~rlF~--~lTVlENv~va~~~~~~~~~~l~~~~~~~~e~~~~e~A~~~Le~vgL~~~a~~~A~~LsyG 153 (250)
T COG0411 76 IARLGIARTFQITRLFP--GLTVLENVAVGAHARLGLSGLLGRPRARKEEREARERARELLEFVGLGELADRPAGNLSYG 153 (250)
T ss_pred HHhccceeecccccccC--CCcHHHHHHHHhhhhhhhhhhhccccchhhHHHHHHHHHHHHHHcCCchhhcchhhcCChh
Confidence 2566788865544 599999999874422 11 123445677888999884 456677799999
Q ss_pred CCCcchhhhhhccCceEEEEcCCccccCh----hhHHHHHhhccc----eEEEEcChHHHHH---HHh----hcccccCC
Q 021362 213 VGDPVEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFDE----KWFIEVDLDTAMQ---RVL----KRHISTGK 277 (313)
Q Consensus 213 ~kqRv~ia~al~~~ar~Li~d~~~lllDE----~~~~~l~~l~~~----~i~vtHd~~~~~~---rv~----griv~~G~ 277 (313)
||+|+.||+|++.+|++|++|+|...+.. ++.+.|+++.+. .++|.|||+.++. |++ |+++++|+
T Consensus 154 ~qR~LEIArALa~~P~lLLLDEPaAGln~~e~~~l~~~i~~i~~~~g~tillIEHdM~~Vm~l~dri~Vl~~G~~IAeG~ 233 (250)
T COG0411 154 QQRRLEIARALATQPKLLLLDEPAAGLNPEETEELAELIRELRDRGGVTILLIEHDMKLVMGLADRIVVLNYGEVIAEGT 233 (250)
T ss_pred HhHHHHHHHHHhcCCCEEEecCccCCCCHHHHHHHHHHHHHHHhcCCcEEEEEEeccHHHhhhccEEEeccCCcCcccCC
Confidence 99999999999999999999999999888 566666666653 3599999999998 655 99999999
Q ss_pred chHHHHH
Q 021362 278 PPDVAKW 284 (313)
Q Consensus 278 ~~ev~~~ 284 (313)
|+++.++
T Consensus 234 P~eV~~d 240 (250)
T COG0411 234 PEEVRNN 240 (250)
T ss_pred HHHHhcC
Confidence 9998654
|
|
| >TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-39 Score=303.91 Aligned_cols=199 Identities=14% Similarity=0.165 Sum_probs=169.0
Q ss_pred EEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCC--ceeecCCCCC------
Q 021362 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQK--ASSFDSQVKP------ 148 (313)
Q Consensus 77 ~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~--G~i~~~g~~~------ 148 (313)
.|+++||+|.|++.. +|+|+||+|++||+++|+||||||||||+++|+|+++ |++ |+|.++|.+.
T Consensus 5 ~l~~~~l~~~~~~~~----~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~---p~~~~G~i~~~g~~~~~~~~~ 77 (362)
T TIGR03258 5 GIRIDHLRVAYGANT----VLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVK---AAGLTGRIAIADRDLTHAPPH 77 (362)
T ss_pred EEEEEEEEEEECCeE----EEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCCCEEEEECCEECCCCCHH
Confidence 489999999998766 9999999999999999999999999999999999999 999 9999999653
Q ss_pred CCeEEEEecCCCCCCcccCCcccChHHHHHhcCCCCCccHHHHHHHHHHhhc--CCCccCCCCCCcCCCcchhhhhhccC
Q 021362 149 PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDILVGLQ 226 (313)
Q Consensus 149 ~~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~~~~~~~~~~~~l~~l~~--~~~~~~~~LSgG~kqRv~ia~al~~~ 226 (313)
.+.++|+||+...++ ++|++||+.+++..++.+......++.++++.++. ..++++.+|||||||||+||+|++.+
T Consensus 78 ~r~ig~vfQ~~~l~p--~~tv~enl~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSgGq~QRvaLARAL~~~ 155 (362)
T TIGR03258 78 KRGLALLFQNYALFP--HLKVEDNVAFGLRAQKMPKADIAERVADALKLVGLGDAAAHLPAQLSGGMQQRIAIARAIAIE 155 (362)
T ss_pred HCCEEEEECCcccCC--CCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCchhhCChhhCCHHHHHHHHHHHHHhcC
Confidence 245999999965443 58999999998766555544455678889998884 35678889999999999999999999
Q ss_pred ceEEEEcCCccccCh----hhHHHHHhhccc-----eEEEEcChHHHHH---HHh----hcccccCCchHHHHH
Q 021362 227 HKVVIVDGNYLFLDG----GVWKDVSSMFDE-----KWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAKW 284 (313)
Q Consensus 227 ar~Li~d~~~lllDE----~~~~~l~~l~~~-----~i~vtHd~~~~~~---rv~----griv~~G~~~ev~~~ 284 (313)
+++|++|+|+..||. .+++.|+++.++ .++||||++++.. |++ |+++..|+++++..+
T Consensus 156 P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~~g~til~vTHd~~ea~~l~dri~vl~~G~i~~~g~~~~~~~~ 229 (362)
T TIGR03258 156 PDVLLLDEPLSALDANIRANMREEIAALHEELPELTILCVTHDQDDALTLADKAGIMKDGRLAAHGEPQALYDA 229 (362)
T ss_pred CCEEEEcCccccCCHHHHHHHHHHHHHHHHhCCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhC
Confidence 999999999999999 455555555432 4799999999977 655 999999999988643
|
This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate. |
| >PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-38 Score=303.60 Aligned_cols=200 Identities=16% Similarity=0.151 Sum_probs=167.1
Q ss_pred ccEEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCC------
Q 021362 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP------ 148 (313)
Q Consensus 75 m~~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~------ 148 (313)
|.+|+++|+++.|++.. +|+|+||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|.+.
T Consensus 1 m~~l~i~~l~~~~~~~~----vl~~vsl~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~~---p~~G~I~~~g~~i~~~~~~ 73 (369)
T PRK11000 1 MASVTLRNVTKAYGDVV----ISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLED---ITSGDLFIGEKRMNDVPPA 73 (369)
T ss_pred CCEEEEEEEEEEeCCeE----EEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC---CCceEEEECCEECCCCCHh
Confidence 45799999999998766 9999999999999999999999999999999999999 9999999999653
Q ss_pred CCeEEEEecCCCCCCcccCCcccChHHHHHhcCCCCCccHHHHHHHHHHhhcC--CCccCCCCCCcCCCcchhhhhhccC
Q 021362 149 PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGLQ 226 (313)
Q Consensus 149 ~~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~~~~~LSgG~kqRv~ia~al~~~ 226 (313)
.+.++|++|+...++ .+|+.||+.+.....+.+.....+++.++++.++.. .++++.+|||||||||+||+|++.+
T Consensus 74 ~~~i~~v~Q~~~l~~--~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~~~~~~LSgGq~QRvaLAraL~~~ 151 (369)
T PRK11000 74 ERGVGMVFQSYALYP--HLSVAENMSFGLKLAGAKKEEINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAE 151 (369)
T ss_pred HCCEEEEeCCcccCC--CCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHhcC
Confidence 245999999965443 489999999886654444333456778889988843 4667789999999999999999999
Q ss_pred ceEEEEcCCccccCh----hhHHHHHhhccc----eEEEEcChHHHHH---HHh----hcccccCCchHHHH
Q 021362 227 HKVVIVDGNYLFLDG----GVWKDVSSMFDE----KWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAK 283 (313)
Q Consensus 227 ar~Li~d~~~lllDE----~~~~~l~~l~~~----~i~vtHd~~~~~~---rv~----griv~~G~~~ev~~ 283 (313)
+++|++|+|+..||. .+++.|+++.++ .|+||||++++.. |++ |+++..|+++++..
T Consensus 152 P~lLLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tvI~vTHd~~~~~~~~d~i~vl~~G~i~~~g~~~~i~~ 223 (369)
T PRK11000 152 PSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYH 223 (369)
T ss_pred CCEEEEeCCcccCCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 999999999999999 445555655432 4799999999876 555 99999999988754
|
|
| >PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-38 Score=296.00 Aligned_cols=209 Identities=14% Similarity=0.146 Sum_probs=168.1
Q ss_pred ccEEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcc-cCCCCceeecCCCCCC----
Q 021362 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINK-IWPQKASSFDSQVKPP---- 149 (313)
Q Consensus 75 m~~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~-~~p~~G~i~~~g~~~~---- 149 (313)
|.+|+++||++.|+...+...+|+||||+|++||++||+|+||||||||+++|+|+++. ..|++|+|.++|++..
T Consensus 1 m~~L~v~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTL~~~l~Gll~~~~~~~~G~i~~~G~~i~~~~~ 80 (326)
T PRK11022 1 MALLNVDKLSVHFGDESAPFRAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQDLQRISE 80 (326)
T ss_pred CceEEEeCeEEEECCCCccEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCCcceEEEECCEECCcCCH
Confidence 56899999999997642223499999999999999999999999999999999999861 0138999999997632
Q ss_pred --------CeEEEEecCCCCCCcccCCcccChHHHHHhc-CCCCCccHHHHHHHHHHhhcC-----CCccCCCCCCcCCC
Q 021362 150 --------DVATVLPMDGFHLYLSQLDAMEDPKEAHARR-GAPWTFNPLLLLNCLKNLRNQ-----GSVYAPSFDHGVGD 215 (313)
Q Consensus 150 --------~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~-~~~~~~~~~~~~~~l~~l~~~-----~~~~~~~LSgG~kq 215 (313)
+.++|+||+++...++.+++.+++....... +....+..+++.++|+.++.. .+.++.+|||||+|
T Consensus 81 ~~~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~l~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~l~~~p~~LSgGq~Q 160 (326)
T PRK11022 81 KERRNLVGAEVAMIFQDPMTSLNPCYTVGFQIMEAIKVHQGGNKKTRRQRAIDLLNQVGIPDPASRLDVYPHQLSGGMSQ 160 (326)
T ss_pred HHHHHHhCCCEEEEecCchhhcCCcCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHHHHhCCchhCCHHHHH
Confidence 2599999997644455688888877665433 333334556788999999853 25677799999999
Q ss_pred cchhhhhhccCceEEEEcCCccccCh----hhHHHHHhhccc----eEEEEcChHHHHH---HHh----hcccccCCchH
Q 021362 216 PVEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFDE----KWFIEVDLDTAMQ---RVL----KRHISTGKPPD 280 (313)
Q Consensus 216 Rv~ia~al~~~ar~Li~d~~~lllDE----~~~~~l~~l~~~----~i~vtHd~~~~~~---rv~----griv~~G~~~e 280 (313)
||+||+|++.++++|++|+++..||. .+++.|+++.++ .+|||||++++.+ |++ |++++.|++++
T Consensus 161 Rv~iArAL~~~P~llilDEPts~LD~~~~~~il~lL~~l~~~~g~til~iTHdl~~~~~~adri~vm~~G~ive~g~~~~ 240 (326)
T PRK11022 161 RVMIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLELQQKENMALVLITHDLALVAEAAHKIIVMYAGQVVETGKAHD 240 (326)
T ss_pred HHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHH
Confidence 99999999999999999999999999 466666666542 4799999999876 665 99999999988
Q ss_pred HHH
Q 021362 281 VAK 283 (313)
Q Consensus 281 v~~ 283 (313)
+..
T Consensus 241 ~~~ 243 (326)
T PRK11022 241 IFR 243 (326)
T ss_pred Hhh
Confidence 864
|
|
| >COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-38 Score=274.92 Aligned_cols=200 Identities=16% Similarity=0.174 Sum_probs=170.5
Q ss_pred cEEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCCCC-----
Q 021362 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPD----- 150 (313)
Q Consensus 76 ~~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~~~----- 150 (313)
+||+++||+..||... +|++|||++++||+++|+|+||+|||||+|+|+|+.+ +.+|+|.++|++...
T Consensus 2 ~mL~v~~l~~~YG~~~----~L~gvsl~v~~Geiv~llG~NGaGKTTlLkti~Gl~~---~~~G~I~~~G~dit~~p~~~ 74 (237)
T COG0410 2 PMLEVENLSAGYGKIQ----ALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVR---PRSGRIIFDGEDITGLPPHE 74 (237)
T ss_pred CceeEEeEeeccccee----EEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCeeEEECCeecCCCCHHH
Confidence 5899999999999987 9999999999999999999999999999999999999 999999999988543
Q ss_pred ----eEEEEecCCCCCCcccCCcccChHHHHHhcCC--CCCccHHHHHHHHHHhhcCCCccCCCCCCcCCCcchhhhhhc
Q 021362 151 ----VATVLPMDGFHLYLSQLDAMEDPKEAHARRGA--PWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVG 224 (313)
Q Consensus 151 ----~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~--~~~~~~~~~~~~l~~l~~~~~~~~~~LSgG~kqRv~ia~al~ 224 (313)
-++||||....++ .|||.||+..+...... ....+.+.+.+++-++....+++..+|||||||.++||+|++
T Consensus 75 r~r~Gi~~VPegR~iF~--~LTVeENL~~g~~~~~~~~~~~~~~e~v~~lFP~Lker~~~~aG~LSGGEQQMLAiaRALm 152 (237)
T COG0410 75 RARLGIAYVPEGRRIFP--RLTVEENLLLGAYARRDKEAQERDLEEVYELFPRLKERRNQRAGTLSGGEQQMLAIARALM 152 (237)
T ss_pred HHhCCeEeCcccccchh--hCcHHHHHhhhhhcccccccccccHHHHHHHChhHHHHhcCcccCCChHHHHHHHHHHHHh
Confidence 3899999866555 49999999987654332 222235667788888888889999999999999999999999
Q ss_pred cCceEEEEcCCccccCh----hhHHHHHhhccc----eEEEEcChHHHHH---HHh----hcccccCCchHHHHH
Q 021362 225 LQHKVVIVDGNYLFLDG----GVWKDVSSMFDE----KWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAKW 284 (313)
Q Consensus 225 ~~ar~Li~d~~~lllDE----~~~~~l~~l~~~----~i~vtHd~~~~~~---rv~----griv~~G~~~ev~~~ 284 (313)
.++++|++|+|...|-+ ++.+.|+++.++ +++|.++.+.+++ |.+ ||++..|+.+++...
T Consensus 153 ~~PklLLLDEPs~GLaP~iv~~I~~~i~~l~~~~g~tIlLVEQn~~~Al~iaDr~yvle~Griv~~G~~~eL~~~ 227 (237)
T COG0410 153 SRPKLLLLDEPSEGLAPKIVEEIFEAIKELRKEGGMTILLVEQNARFALEIADRGYVLENGRIVLSGTAAELLAD 227 (237)
T ss_pred cCCCEEEecCCccCcCHHHHHHHHHHHHHHHHcCCcEEEEEeccHHHHHHhhCEEEEEeCCEEEEecCHHHHhcC
Confidence 99999999999999988 666667777653 3699999999998 443 999999999998654
|
|
| >PRK10851 sulfate/thiosulfate transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-38 Score=298.75 Aligned_cols=198 Identities=14% Similarity=0.169 Sum_probs=165.5
Q ss_pred EEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCC------CC
Q 021362 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP------PD 150 (313)
Q Consensus 77 ~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~------~~ 150 (313)
+|+++|+++.|++.. +|+|+||+|++||+++|+||||||||||+|+|+|+++ |++|+|+++|++. .+
T Consensus 2 ~L~i~~l~~~~~~~~----~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~---p~~G~I~i~g~~i~~~~~~~r 74 (353)
T PRK10851 2 SIEIANIKKSFGRTQ----VLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEH---QTSGHIRFHGTDVSRLHARDR 74 (353)
T ss_pred EEEEEEEEEEeCCeE----EEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCcEEEECCEECCCCCHHHC
Confidence 589999999998766 9999999999999999999999999999999999999 9999999999753 24
Q ss_pred eEEEEecCCCCCCcccCCcccChHHHHHhc----CCCCCccHHHHHHHHHHhhc--CCCccCCCCCCcCCCcchhhhhhc
Q 021362 151 VATVLPMDGFHLYLSQLDAMEDPKEAHARR----GAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDILVG 224 (313)
Q Consensus 151 ~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~----~~~~~~~~~~~~~~l~~l~~--~~~~~~~~LSgG~kqRv~ia~al~ 224 (313)
.++|+||+...++ ++|+.||+.++.... +.+.....+++.++++.++. ..++++.+|||||||||+||+|++
T Consensus 75 ~i~~v~Q~~~l~p--~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGq~QRvalArAL~ 152 (353)
T PRK10851 75 KVGFVFQHYALFR--HMTVFDNIAFGLTVLPRRERPNAAAIKAKVTQLLEMVQLAHLADRYPAQLSGGQKQRVALARALA 152 (353)
T ss_pred CEEEEecCcccCC--CCcHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHh
Confidence 6999999955443 589999999876532 22223345677888998884 356778899999999999999999
Q ss_pred cCceEEEEcCCccccCh----hhHHHHHhhccc----eEEEEcChHHHHH---HHh----hcccccCCchHHHH
Q 021362 225 LQHKVVIVDGNYLFLDG----GVWKDVSSMFDE----KWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAK 283 (313)
Q Consensus 225 ~~ar~Li~d~~~lllDE----~~~~~l~~l~~~----~i~vtHd~~~~~~---rv~----griv~~G~~~ev~~ 283 (313)
.++++|++|+|+..||. .+++.|+++.++ .++||||++++.. |++ |++++.|+++++..
T Consensus 153 ~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tii~vTHd~~ea~~~~Dri~vl~~G~i~~~g~~~~i~~ 226 (353)
T PRK10851 153 VEPQILLLDEPFGALDAQVRKELRRWLRQLHEELKFTSVFVTHDQEEAMEVADRVVVMSQGNIEQAGTPDQVWR 226 (353)
T ss_pred cCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 99999999999999999 445555555432 4799999999987 555 99999999988854
|
|
| >COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-38 Score=304.15 Aligned_cols=208 Identities=19% Similarity=0.188 Sum_probs=176.1
Q ss_pred CccEEEEccceEEcccc-------ccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCC
Q 021362 74 EIPVVEARCMDEVYDAL-------AQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQV 146 (313)
Q Consensus 74 ~m~~l~~~~l~~~y~~~-------~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~ 146 (313)
.-++++++||+|.|... .+.+.+++||||++.+||++||+|+||||||||.|+|+|+++ |++|+|.++|.
T Consensus 277 ~~~ll~V~~l~k~y~~~~~~~~~~~~~~~Av~~VSf~l~~GE~lglVGeSGsGKSTlar~i~gL~~---P~~G~i~~~g~ 353 (539)
T COG1123 277 AEPLLSVRNLSKRYGSRKGLFVRERGEVKAVDDVSFDLREGETLGLVGESGSGKSTLARILAGLLP---PSSGSIIFDGQ 353 (539)
T ss_pred cCceeEeeeeeeeeccccccccccccceeeeeeeeeEecCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCceEEEeCc
Confidence 34689999999999842 234679999999999999999999999999999999999999 99999999996
Q ss_pred C----------CCCeEEEEecCCCCCCcccCCcccChHHHHHhcCCC-CCccHHHHHHHHHHhhcC---CCccCCCCCCc
Q 021362 147 K----------PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAP-WTFNPLLLLNCLKNLRNQ---GSVYAPSFDHG 212 (313)
Q Consensus 147 ~----------~~~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~-~~~~~~~~~~~l~~l~~~---~~~~~~~LSgG 212 (313)
+ ..+.+.++|||++...++.+||.+++..++..++.. .....+++.++|+.+++. .++++.+||||
T Consensus 354 ~~~~~~~~~~~~r~~~QmvFQdp~~SLnPr~tV~~~i~epL~~~~~~~~~~~~~rv~~ll~~VgL~~~~l~ryP~elSGG 433 (539)
T COG1123 354 DLDLTGGELRRLRRRIQMVFQDPYSSLNPRMTVGDILAEPLRIHGGGSGAERRARVAELLELVGLPPEFLDRYPHELSGG 433 (539)
T ss_pred ccccccchhhhhhhheEEEEeCcccccCccccHHHHHHhHHhhhcccchHHHHHHHHHHHHHcCCCHHHHhcCchhcCcc
Confidence 5 124689999999998888999999999988765433 344456788999999943 56788899999
Q ss_pred CCCcchhhhhhccCceEEEEcCCccccCh----hhHHHHHhhccc----eEEEEcChHHHHH---HHh----hcccccCC
Q 021362 213 VGDPVEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFDE----KWFIEVDLDTAMQ---RVL----KRHISTGK 277 (313)
Q Consensus 213 ~kqRv~ia~al~~~ar~Li~d~~~lllDE----~~~~~l~~l~~~----~i~vtHd~~~~~~---rv~----griv~~G~ 277 (313)
||||++||+|++.++++|+.|+++.-||. .+.+.|.++.++ .+|||||++.+.+ |++ |++++.|+
T Consensus 434 QrQRvaIARALa~~P~lli~DEp~SaLDvsvqa~VlnLl~~lq~e~g~t~lfISHDl~vV~~i~drv~vm~~G~iVE~G~ 513 (539)
T COG1123 434 QRQRVAIARALALEPKLLILDEPVSALDVSVQAQVLNLLKDLQEELGLTYLFISHDLAVVRYIADRVAVMYDGRIVEEGP 513 (539)
T ss_pred hhHHHHHHHHHhcCCCEEEecCCccccCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHHHHHhhCceEEEEECCeEEEeCC
Confidence 99999999999999999999999999999 455555555544 3799999999998 666 99999997
Q ss_pred chHHHHH
Q 021362 278 PPDVAKW 284 (313)
Q Consensus 278 ~~ev~~~ 284 (313)
.+++...
T Consensus 514 ~~~v~~~ 520 (539)
T COG1123 514 TEKVFEN 520 (539)
T ss_pred HHHHhcC
Confidence 7777543
|
|
| >COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-38 Score=286.41 Aligned_cols=208 Identities=16% Similarity=0.163 Sum_probs=173.7
Q ss_pred EEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcc--cCCCCceeecCCCC-------
Q 021362 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINK--IWPQKASSFDSQVK------- 147 (313)
Q Consensus 77 ~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~--~~p~~G~i~~~g~~------- 147 (313)
+|+++||+..|....+.+.+++||||+|++||++||+|.|||||||+.+.|+|+++. ..-.+|+|.++|++
T Consensus 1 lL~v~nL~v~f~~~~g~v~av~~vs~~i~~GE~lgiVGESGsGKS~~~~aim~llp~~~~~i~~G~i~f~g~~l~~l~~~ 80 (316)
T COG0444 1 LLEVKNLSVSFPTDAGVVKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLLSLSEK 80 (316)
T ss_pred CceEeeeEEEEecCCccEEEEeceeEEEcCCcEEEEEcCCCCCHHHHHHHHHhccCCCCCeEeeeEEEECCcccccCCHH
Confidence 478999999998755556699999999999999999999999999999999999951 11256899999975
Q ss_pred -----CCCeEEEEecCCCCCCcccCCcccChHHHHHhcC-C-CCCccHHHHHHHHHHhhcC-----CCccCCCCCCcCCC
Q 021362 148 -----PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRG-A-PWTFNPLLLLNCLKNLRNQ-----GSVYAPSFDHGVGD 215 (313)
Q Consensus 148 -----~~~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~-~-~~~~~~~~~~~~l~~l~~~-----~~~~~~~LSgG~kq 215 (313)
+.+.|+++|||+....++.+++.+.+......+. . .+++..+++.++|+.++.. .+.|+.+|||||+|
T Consensus 81 ~~~~iRG~~I~mIfQ~p~~sLnPv~~Ig~Qi~E~l~~h~~~~~~~ea~~~a~~~L~~Vgi~~~~~~~~~YPhelSGGMrQ 160 (316)
T COG0444 81 ELRKIRGKEIAMIFQDPMTSLNPVMTIGDQIAEVLRLHGKGLSKKEAKERAIELLELVGIPDPERRLKSYPHELSGGMRQ 160 (316)
T ss_pred HHHhhcCceEEEEEcCchhhcCChhhHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHcCCCCHHHHHhhCCcccCCcHHH
Confidence 3457999999998888888999998888776543 2 3455677889999999943 25677799999999
Q ss_pred cchhhhhhccCceEEEEcCCccccCh----hhHHHHHhhccc----eEEEEcChHHHHH---HHh----hcccccCCchH
Q 021362 216 PVEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFDE----KWFIEVDLDTAMQ---RVL----KRHISTGKPPD 280 (313)
Q Consensus 216 Rv~ia~al~~~ar~Li~d~~~lllDE----~~~~~l~~l~~~----~i~vtHd~~~~~~---rv~----griv~~G~~~e 280 (313)
||.||+|++.++++||.|+|+.-||- ++++.|+++.++ .+|||||+..+.+ ||+ |++|+.|++++
T Consensus 161 RV~IAmala~~P~LlIADEPTTALDvt~QaqIl~Ll~~l~~e~~~aiilITHDl~vva~~aDri~VMYaG~iVE~g~~~~ 240 (316)
T COG0444 161 RVMIAMALALNPKLLIADEPTTALDVTVQAQILDLLKELQREKGTALILITHDLGVVAEIADRVAVMYAGRIVEEGPVEE 240 (316)
T ss_pred HHHHHHHHhCCCCEEEeCCCcchhhHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcceEEEEECcEEEEeCCHHH
Confidence 99999999999999999999999999 555555555542 3799999999998 666 99999999999
Q ss_pred HHHH
Q 021362 281 VAKW 284 (313)
Q Consensus 281 v~~~ 284 (313)
+..+
T Consensus 241 i~~~ 244 (316)
T COG0444 241 IFKN 244 (316)
T ss_pred HhcC
Confidence 8764
|
|
| >TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-38 Score=292.15 Aligned_cols=199 Identities=18% Similarity=0.170 Sum_probs=164.7
Q ss_pred EEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCC-------C
Q 021362 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP-------P 149 (313)
Q Consensus 77 ~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~-------~ 149 (313)
+|+++|+++.|++.. +|+++||+|++|+++||+||||||||||+++|+|+++ |++|+|.++|.+. .
T Consensus 4 ~i~~~~l~~~~~~~~----~l~~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~---p~~G~i~~~g~~~~~~~~~~~ 76 (303)
T TIGR01288 4 AIDLVGVSKSYGDKV----VVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMIS---PDRGKITVLGEPVPSRARLAR 76 (303)
T ss_pred EEEEEeEEEEeCCeE----EEcceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC---CCceEEEECCEECcccHHHHh
Confidence 699999999998766 9999999999999999999999999999999999999 9999999998653 3
Q ss_pred CeEEEEecCCCCCCcccCCcccChHHHHHhcCCCCCccHHHHHHHHHHhhc--CCCccCCCCCCcCCCcchhhhhhccCc
Q 021362 150 DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDILVGLQH 227 (313)
Q Consensus 150 ~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~~~~~~~~~~~~l~~l~~--~~~~~~~~LSgG~kqRv~ia~al~~~a 227 (313)
+.++|++|++..++ .+|+.||+.+....++.......+++.++++.++. ..++++.+||||||||++||++++.++
T Consensus 77 ~~i~~v~q~~~~~~--~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p 154 (303)
T TIGR01288 77 VAIGVVPQFDNLDP--EFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLESKADVRVALLSGGMKRRLTLARALINDP 154 (303)
T ss_pred hcEEEEeccccCCc--CCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhHhcCchhhCCHHHHHHHHHHHHHhcCC
Confidence 46999999965433 48999999875544443322233456778888874 346677899999999999999999999
Q ss_pred eEEEEcCCccccCh----hhHHHHHhhccc---eEEEEcChHHHHH---HHh----hcccccCCchHHHHH
Q 021362 228 KVVIVDGNYLFLDG----GVWKDVSSMFDE---KWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAKW 284 (313)
Q Consensus 228 r~Li~d~~~lllDE----~~~~~l~~l~~~---~i~vtHd~~~~~~---rv~----griv~~G~~~ev~~~ 284 (313)
++|++|+|+..||. .+++.|+++.++ .+++|||++++.. |++ |+++..|+++++...
T Consensus 155 ~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~til~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 225 (303)
T TIGR01288 155 QLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFMEEAERLCDRLCVLESGRKIAEGRPHALIDE 225 (303)
T ss_pred CEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhh
Confidence 99999999999999 566666666432 4699999999876 555 999999999888654
|
This model does not recognize the highly divergent NodI from Azorhizobium caulinodans. |
| >PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-38 Score=293.56 Aligned_cols=206 Identities=16% Similarity=0.143 Sum_probs=168.2
Q ss_pred ccEEEEccceEEccccc------cccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCC
Q 021362 75 IPVVEARCMDEVYDALA------QRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP 148 (313)
Q Consensus 75 m~~l~~~~l~~~y~~~~------~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~ 148 (313)
+++|+++||++.|+... +.+.+|+||||+|++||++||+|+||||||||+++|+|+++ |++|+|.++|.+.
T Consensus 3 ~~~l~v~nl~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~IvG~sGsGKSTLl~~l~gl~~---p~~G~i~~~g~~l 79 (327)
T PRK11308 3 QPLLQAIDLKKHYPVKRGLFKPERLVKALDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIET---PTGGELYYQGQDL 79 (327)
T ss_pred CceEEEeeeEEEEcCCCCccccCCceeEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHHcCCC---CCCcEEEECCEEc
Confidence 45899999999996321 12349999999999999999999999999999999999999 9999999999653
Q ss_pred -----------CCeEEEEecCCCCCCcccCCcccChHHHHHhc-CCCCCccHHHHHHHHHHhhcC---CCccCCCCCCcC
Q 021362 149 -----------PDVATVLPMDGFHLYLSQLDAMEDPKEAHARR-GAPWTFNPLLLLNCLKNLRNQ---GSVYAPSFDHGV 213 (313)
Q Consensus 149 -----------~~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~-~~~~~~~~~~~~~~l~~l~~~---~~~~~~~LSgG~ 213 (313)
.+.++|+||+++...++.+++.+++.+..... +.......+++.++++.++.. .+.++.+|||||
T Consensus 80 ~~~~~~~~~~~r~~i~~v~Q~~~~~l~p~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~p~~LSgGq 159 (327)
T PRK11308 80 LKADPEAQKLLRQKIQIVFQNPYGSLNPRKKVGQILEEPLLINTSLSAAERREKALAMMAKVGLRPEHYDRYPHMFSGGQ 159 (327)
T ss_pred CcCCHHHHHHHhCCEEEEEcCchhhcCCccCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHCCCChHHhcCCCccCCHHH
Confidence 23599999997544455689999987765443 333334456788999998853 366788999999
Q ss_pred CCcchhhhhhccCceEEEEcCCccccCh----hhHHHHHhhccc----eEEEEcChHHHHH---HHh----hcccccCCc
Q 021362 214 GDPVEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFDE----KWFIEVDLDTAMQ---RVL----KRHISTGKP 278 (313)
Q Consensus 214 kqRv~ia~al~~~ar~Li~d~~~lllDE----~~~~~l~~l~~~----~i~vtHd~~~~~~---rv~----griv~~G~~ 278 (313)
+||++||+|++.++++|++|+++..||. .+++.|.++.++ .+|||||++++.. |++ |++++.|++
T Consensus 160 ~QRv~iArAL~~~P~lLilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~~~~~~adrv~vm~~G~ive~g~~ 239 (327)
T PRK11308 160 RQRIAIARALMLDPDVVVADEPVSALDVSVQAQVLNLMMDLQQELGLSYVFISHDLSVVEHIADEVMVMYLGRCVEKGTK 239 (327)
T ss_pred HHHHHHHHHHHcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCH
Confidence 9999999999999999999999999999 455566655432 4799999999986 655 999999999
Q ss_pred hHHHH
Q 021362 279 PDVAK 283 (313)
Q Consensus 279 ~ev~~ 283 (313)
+++..
T Consensus 240 ~~~~~ 244 (327)
T PRK11308 240 EQIFN 244 (327)
T ss_pred HHHhc
Confidence 88865
|
|
| >COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.8e-38 Score=264.91 Aligned_cols=198 Identities=15% Similarity=0.175 Sum_probs=165.2
Q ss_pred ccEEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCCC---Ce
Q 021362 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPP---DV 151 (313)
Q Consensus 75 m~~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~~---~~ 151 (313)
|.++.+++++.+|+++. ..+|+|+|++|.+||+++++||||||||||+|+++|+.. |+.|+|.++|+.+. ..
T Consensus 1 M~~l~~~~~sl~y~g~~--~~~le~vsL~ia~ge~vv~lGpSGcGKTTLLnl~AGf~~---P~~G~i~l~~r~i~gPgae 75 (259)
T COG4525 1 MCMLNVSHLSLSYEGKP--RSALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVT---PSRGSIQLNGRRIEGPGAE 75 (259)
T ss_pred CceeehhheEEecCCcc--hhhhhccceeecCCCEEEEEcCCCccHHHHHHHHhcCcC---cccceEEECCEeccCCCcc
Confidence 56789999999998754 448999999999999999999999999999999999999 99999999997532 34
Q ss_pred EEEEecCCCCCCcccCCcccChHHHHHhcCCCCCccHHHHHHHHHHhh--cCCCccCCCCCCcCCCcchhhhhhccCceE
Q 021362 152 ATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLR--NQGSVYAPSFDHGVGDPVEDDILVGLQHKV 229 (313)
Q Consensus 152 i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~~~~~~~~~~~~l~~l~--~~~~~~~~~LSgG~kqRv~ia~al~~~ar~ 229 (313)
-|+|||++-.++ ++++.+|++|++...|.++....+.+.+.+..+| ...++++-+|||||||||.||+|++.+++.
T Consensus 76 rgvVFQ~~~LlP--Wl~~~dNvafgL~l~Gi~k~~R~~~a~q~l~~VgL~~~~~~~i~qLSGGmrQRvGiARALa~eP~~ 153 (259)
T COG4525 76 RGVVFQNEALLP--WLNVIDNVAFGLQLRGIEKAQRREIAHQMLALVGLEGAEHKYIWQLSGGMRQRVGIARALAVEPQL 153 (259)
T ss_pred ceeEeccCccch--hhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhCcccccccceEeecchHHHHHHHHHHhhcCcce
Confidence 578999977665 6999999999999999998888888999999998 445677789999999999998888777777
Q ss_pred EEEcCCccccCh----hhHHHHHhhccc----eEEEEcChHHHHH---HHh------hcccccCCch
Q 021362 230 VIVDGNYLFLDG----GVWKDVSSMFDE----KWFIEVDLDTAMQ---RVL------KRHISTGKPP 279 (313)
Q Consensus 230 Li~d~~~lllDE----~~~~~l~~l~~~----~i~vtHd~~~~~~---rv~------griv~~G~~~ 279 (313)
|++|+|+--+|- ++.+.+.++... .++||||++++.- |++ ||+++.-+++
T Consensus 154 LlLDEPfgAlDa~tRe~mQelLldlw~~tgk~~lliTH~ieEAlflatrLvvlsp~pgRvv~~~~~d 220 (259)
T COG4525 154 LLLDEPFGALDALTREQMQELLLDLWQETGKQVLLITHDIEEALFLATRLVVLSPGPGRVVERLPLD 220 (259)
T ss_pred EeecCchhhHHHHHHHHHHHHHHHHHHHhCCeEEEEeccHHHHHhhhheeEEecCCCceeeEecCCC
Confidence 777777777776 444445554432 4799999999987 555 7888765554
|
|
| >PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-38 Score=294.07 Aligned_cols=206 Identities=16% Similarity=0.114 Sum_probs=166.9
Q ss_pred ccEEEEccceEEccccc---------cccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCC
Q 021362 75 IPVVEARCMDEVYDALA---------QRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQ 145 (313)
Q Consensus 75 m~~l~~~~l~~~y~~~~---------~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g 145 (313)
.++|+++||++.|+... ....+|+|+||+|++||++||+|+||||||||+++|+|+++ |++|+|.++|
T Consensus 6 ~~~l~v~~l~~~~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTLlk~i~Gl~~---p~~G~I~~~G 82 (331)
T PRK15079 6 KVLLEVADLKVHFDIKDGKQWFWQPPKTLKAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVK---ATDGEVAWLG 82 (331)
T ss_pred CceEEEeCeEEEECCCCccccccccCCceEEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCC---CCCcEEEECC
Confidence 35899999999996421 12459999999999999999999999999999999999999 9999999999
Q ss_pred CCC-----------CCeEEEEecCCCCCCcccCCcccChHHHHHhc--CCCCCccHHHHHHHHHHhhcC---CCccCCCC
Q 021362 146 VKP-----------PDVATVLPMDGFHLYLSQLDAMEDPKEAHARR--GAPWTFNPLLLLNCLKNLRNQ---GSVYAPSF 209 (313)
Q Consensus 146 ~~~-----------~~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~--~~~~~~~~~~~~~~l~~l~~~---~~~~~~~L 209 (313)
.+. .+.++|++|+++....+.+|+.+|+.+....+ +.......+++.++++.++.. .++++.+|
T Consensus 83 ~~i~~~~~~~~~~~r~~i~~v~Q~~~~~l~p~~tv~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~vgl~~~~~~~~p~~L 162 (331)
T PRK15079 83 KDLLGMKDDEWRAVRSDIQMIFQDPLASLNPRMTIGEIIAEPLRTYHPKLSRQEVKDRVKAMMLKVGLLPNLINRYPHEF 162 (331)
T ss_pred EECCcCCHHHHHHHhCceEEEecCchhhcCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHhcCCcccC
Confidence 763 23599999997422334589999998876543 233333455677889988852 46777899
Q ss_pred CCcCCCcchhhhhhccCceEEEEcCCccccCh----hhHHHHHhhcc----ceEEEEcChHHHHH---HHh----hcccc
Q 021362 210 DHGVGDPVEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFD----EKWFIEVDLDTAMQ---RVL----KRHIS 274 (313)
Q Consensus 210 SgG~kqRv~ia~al~~~ar~Li~d~~~lllDE----~~~~~l~~l~~----~~i~vtHd~~~~~~---rv~----griv~ 274 (313)
||||+||++||+|++.++++|++|+|+..||. .+++.|+++.+ ..+|||||++++.. |++ |++++
T Consensus 163 SgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~~~til~iTHdl~~~~~~~dri~vl~~G~ive 242 (331)
T PRK15079 163 SGGQCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVNLLQQLQREMGLSLIFIAHDLAVVKHISDRVLVMYLGHAVE 242 (331)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE
Confidence 99999999999999999999999999999999 45555655543 24799999999986 555 99999
Q ss_pred cCCchHHHH
Q 021362 275 TGKPPDVAK 283 (313)
Q Consensus 275 ~G~~~ev~~ 283 (313)
.|+++++..
T Consensus 243 ~g~~~~i~~ 251 (331)
T PRK15079 243 LGTYDEVYH 251 (331)
T ss_pred EcCHHHHHc
Confidence 999888764
|
|
| >PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-38 Score=300.39 Aligned_cols=199 Identities=18% Similarity=0.206 Sum_probs=166.4
Q ss_pred ccEEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCC------
Q 021362 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP------ 148 (313)
Q Consensus 75 m~~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~------ 148 (313)
|++|+++||++.|++.. +|+++||+|++||+++|+||||||||||+|+|+|+++ |++|+|.++|.+.
T Consensus 1 ~~~L~~~nls~~y~~~~----vL~~vs~~i~~Geiv~liGpNGaGKSTLLk~LaGll~---p~sG~I~l~G~~i~~~~~~ 73 (402)
T PRK09536 1 MPMIDVSDLSVEFGDTT----VLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLT---PTAGTVLVAGDDVEALSAR 73 (402)
T ss_pred CceEEEeeEEEEECCEE----EEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCC---CCCcEEEECCEEcCcCCHH
Confidence 45899999999998776 9999999999999999999999999999999999999 9999999999653
Q ss_pred --CCeEEEEecCCCCCCcccCCcccChHHHHHhc----CCCCCccHHHHHHHHHHhhc--CCCccCCCCCCcCCCcchhh
Q 021362 149 --PDVATVLPMDGFHLYLSQLDAMEDPKEAHARR----GAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDD 220 (313)
Q Consensus 149 --~~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~----~~~~~~~~~~~~~~l~~l~~--~~~~~~~~LSgG~kqRv~ia 220 (313)
.+.++|++|+...++ .+|+.||+.+....+ +.....+.+++.++++.++. ..++++.+||||||||++||
T Consensus 74 ~~~~~ig~v~q~~~l~~--~~tv~e~v~~~~~~~~~~~~~~~~~~~~~v~~~le~vgl~~~~~~~~~~LSgGerQRv~IA 151 (402)
T PRK09536 74 AASRRVASVPQDTSLSF--EFDVRQVVEMGRTPHRSRFDTWTETDRAAVERAMERTGVAQFADRPVTSLSGGERQRVLLA 151 (402)
T ss_pred HHhcceEEEccCCCCCC--CCCHHHHHHhccchhcccccCCCHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHH
Confidence 245999999965444 489999998754321 11123455678889999884 34667889999999999999
Q ss_pred hhhccCceEEEEcCCccccCh----hhHHHHHhhccc---eEEEEcChHHHHH---HHh----hcccccCCchHHH
Q 021362 221 ILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFDE---KWFIEVDLDTAMQ---RVL----KRHISTGKPPDVA 282 (313)
Q Consensus 221 ~al~~~ar~Li~d~~~lllDE----~~~~~l~~l~~~---~i~vtHd~~~~~~---rv~----griv~~G~~~ev~ 282 (313)
+++++++++|++|+|+..||. ++++.|+++.++ .+++|||++++.+ |++ |++++.|+++++.
T Consensus 152 rAL~~~P~iLLLDEPtsgLD~~~~~~l~~lL~~l~~~g~TIIivsHdl~~~~~~adrii~l~~G~iv~~G~~~ev~ 227 (402)
T PRK09536 152 RALAQATPVLLLDEPTASLDINHQVRTLELVRRLVDDGKTAVAAIHDLDLAARYCDELVLLADGRVRAAGPPADVL 227 (402)
T ss_pred HHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEecCHHHHh
Confidence 999999999999999999999 566666666532 3799999999977 655 9999999999874
|
|
| >COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-38 Score=265.23 Aligned_cols=200 Identities=17% Similarity=0.180 Sum_probs=173.6
Q ss_pred ccEEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCC------
Q 021362 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP------ 148 (313)
Q Consensus 75 m~~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~------ 148 (313)
++.|+++|+.|.||... +|++||++-++|+++.|+|.|||||||++|||+=+.+ |+.|.|.++|..+
T Consensus 4 ~~~l~v~dlHK~~G~~e----VLKGvSL~A~~GdVisIIGsSGSGKSTfLRCiN~LE~---P~~G~I~v~geei~~k~~~ 76 (256)
T COG4598 4 ENALEVEDLHKRYGEHE----VLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEK---PSAGSIRVNGEEIRLKRDK 76 (256)
T ss_pred ccceehhHHHhhcccch----hhcceeeecCCCCEEEEecCCCCchhHHHHHHHhhcC---CCCceEEECCeEEEeeeCC
Confidence 34699999999999988 9999999999999999999999999999999999999 9999999999651
Q ss_pred ---------------CCeEEEEecCCCCCCcccCCcccChHHHH-HhcCCCCCccHHHHHHHHHHhhc--CCCccCCCCC
Q 021362 149 ---------------PDVATVLPMDGFHLYLSQLDAMEDPKEAH-ARRGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFD 210 (313)
Q Consensus 149 ---------------~~~i~~v~qd~~~~~~~~ltv~e~~~~~~-~~~~~~~~~~~~~~~~~l~~l~~--~~~~~~~~LS 210 (313)
+.+.++|||. |+++. +||+.||+.... ...|.++.+..++++.+|.++|. ..+.|+..||
T Consensus 77 ~G~l~~ad~~q~~r~Rs~L~mVFQ~-FNLWs-HmtvLeNViEaPvhVLg~~k~ea~e~Ae~~L~kVGi~ek~~~YP~~LS 154 (256)
T COG4598 77 DGQLKPADKRQLQRLRTRLGMVFQH-FNLWS-HMTVLENVIEAPVHVLGVSKAEAIERAEKYLAKVGIAEKADAYPAHLS 154 (256)
T ss_pred CCCeeeCCHHHHHHHHHHhhHhhhh-cchhH-HHHHHHHHHhcchHhhcCCHHHHHHHHHHHHHHhCchhhhhcCccccC
Confidence 1237899999 55554 699999988753 45678888888999999999994 4556777999
Q ss_pred CcCCCcchhhhhhccCceEEEEcCCccccCh----hhHHHHHhhccce---EEEEcChHHHHH---HHh----hcccccC
Q 021362 211 HGVGDPVEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFDEK---WFIEVDLDTAMQ---RVL----KRHISTG 276 (313)
Q Consensus 211 gG~kqRv~ia~al~~~ar~Li~d~~~lllDE----~~~~~l~~l~~~~---i~vtHd~~~~~~---rv~----griv~~G 276 (313)
|||+||++||+|++..+.++++|+|+.-||+ ++++.++++..++ ++|||.|.++.. .++ |.+-+.|
T Consensus 155 GGQQQR~aIARaLameP~vmLFDEPTSALDPElVgEVLkv~~~LAeEgrTMv~VTHEM~FAR~Vss~v~fLh~G~iEE~G 234 (256)
T COG4598 155 GGQQQRVAIARALAMEPEVMLFDEPTSALDPELVGEVLKVMQDLAEEGRTMVVVTHEMGFARDVSSHVIFLHQGKIEEEG 234 (256)
T ss_pred chHHHHHHHHHHHhcCCceEeecCCcccCCHHHHHHHHHHHHHHHHhCCeEEEEeeehhHHHhhhhheEEeecceecccC
Confidence 9999999999999999999999999999999 6677777777664 799999999988 555 8888999
Q ss_pred CchHHHH
Q 021362 277 KPPDVAK 283 (313)
Q Consensus 277 ~~~ev~~ 283 (313)
+|+++..
T Consensus 235 ~P~qvf~ 241 (256)
T COG4598 235 PPEQVFG 241 (256)
T ss_pred ChHHHhc
Confidence 9999854
|
|
| >COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-37 Score=257.38 Aligned_cols=193 Identities=19% Similarity=0.142 Sum_probs=164.7
Q ss_pred EEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCC---------
Q 021362 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK--------- 147 (313)
Q Consensus 77 ~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~--------- 147 (313)
+|++++++|..+.....+.+|++|+|.|++||-++|+||||||||||+-+++|+.. |++|+|++.|++
T Consensus 6 ii~~~~l~ktvg~~~~~l~IL~~V~L~v~~Ge~vaiVG~SGSGKSTLl~vlAGLd~---~ssGeV~l~G~~L~~ldEd~r 82 (228)
T COG4181 6 IIEVHHLSKTVGQGEGELSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDD---PSSGEVRLLGQPLHKLDEDAR 82 (228)
T ss_pred eeehhhhhhhhcCCCcceeEeecceEEecCCceEEEEcCCCCcHHhHHHHHhcCCC---CCCceEEEcCcchhhcCHHHH
Confidence 79999999999988888889999999999999999999999999999999999999 999999999976
Q ss_pred ---CCCeEEEEecCCCCCCcccCCcccChHHHHHhcCCCCCccHHHHHHHHHHhhcCC--CccCCCCCCcCCCcchhhhh
Q 021362 148 ---PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQG--SVYAPSFDHGVGDPVEDDIL 222 (313)
Q Consensus 148 ---~~~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~--~~~~~~LSgG~kqRv~ia~a 222 (313)
+.+++|+|||. |++.+ .||..||+..++...|.........+.++|+++|... ..++.+|||||+|||+||+|
T Consensus 83 A~~R~~~vGfVFQS-F~Lip-~ltAlENV~lPleL~ge~~~~~~~~A~~lL~~vGLg~Rl~HyP~qLSGGEQQRVAiARA 160 (228)
T COG4181 83 AALRARHVGFVFQS-FHLIP-NLTALENVALPLELRGESSADSRAGAKALLEAVGLGKRLTHYPAQLSGGEQQRVALARA 160 (228)
T ss_pred HHhhccceeEEEEe-eeccc-cchhhhhccchhhhcCCccccHHHHHHHHHHHhCcccccccCccccCchHHHHHHHHHH
Confidence 34579999999 55443 5999999999999988666666677899999999554 44666999999999999999
Q ss_pred hccCceEEEEcCCccccChh----hHHHHHhhccc----eEEEEcChHHHHH--HHh----hcccc
Q 021362 223 VGLQHKVVIVDGNYLFLDGG----VWKDVSSMFDE----KWFIEVDLDTAMQ--RVL----KRHIS 274 (313)
Q Consensus 223 l~~~ar~Li~d~~~lllDE~----~~~~l~~l~~~----~i~vtHd~~~~~~--rv~----griv~ 274 (313)
++..+++|+.|+|+--||-. +.+.+-.+..+ -++||||..++.+ |.+ |++++
T Consensus 161 fa~~P~vLfADEPTGNLD~~Tg~~iaDLlF~lnre~G~TlVlVTHD~~LA~Rc~R~~r~~~G~l~~ 226 (228)
T COG4181 161 FAGRPDVLFADEPTGNLDRATGDKIADLLFALNRERGTTLVLVTHDPQLAARCDRQLRLRSGRLVE 226 (228)
T ss_pred hcCCCCEEeccCCCCCcchhHHHHHHHHHHHHhhhcCceEEEEeCCHHHHHhhhheeeeecceecc
Confidence 99999999999999999984 44444444333 3799999999988 555 77654
|
|
| >cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.7e-38 Score=277.38 Aligned_cols=194 Identities=19% Similarity=0.206 Sum_probs=158.7
Q ss_pred EEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCC-------CC
Q 021362 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP-------PD 150 (313)
Q Consensus 78 l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~-------~~ 150 (313)
|+++|+++.|++.. +|+|+||++++||+++|+||||||||||+++|+|+++ |++|+|.++|.+. .+
T Consensus 1 i~~~~~~~~~~~~~----il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~---~~~G~i~~~g~~~~~~~~~~~~ 73 (220)
T cd03265 1 IEVENLVKKYGDFE----AVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLK---PTSGRATVAGHDVVREPREVRR 73 (220)
T ss_pred CEEEEEEEEECCEE----eeeceeEEECCCCEEEEECCCCCCHHHHHHHHhCCCC---CCceEEEECCEecCcChHHHhh
Confidence 57899999998766 9999999999999999999999999999999999999 9999999998653 23
Q ss_pred eEEEEecCCCCCCcccCCcccChHHHHHhcCCCCCccHHHHHHHHHHhhcC--CCccCCCCCCcCCCcchhhhhhccCce
Q 021362 151 VATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGLQHK 228 (313)
Q Consensus 151 ~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~~~~~LSgG~kqRv~ia~al~~~ar 228 (313)
.++|++|++..+. .+|+.+|+.+....++.......+++.++++.++.. .+.++.+||||||||++||++++.+++
T Consensus 74 ~i~~~~q~~~~~~--~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qr~~la~al~~~p~ 151 (220)
T cd03265 74 RIGIVFQDLSVDD--ELTGWENLYIHARLYGVPGAERRERIDELLDFVGLLEAADRLVKTYSGGMRRRLEIARSLVHRPE 151 (220)
T ss_pred cEEEecCCccccc--cCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCChhhCCHHHHHHHHHHHHHhcCCC
Confidence 5899999965433 489999998876554443333445678888888843 466777999999999999999999999
Q ss_pred EEEEcCCccccCh----hhHHHHHhhccc----eEEEEcChHHHHH---HHh----hcccccCCchH
Q 021362 229 VVIVDGNYLFLDG----GVWKDVSSMFDE----KWFIEVDLDTAMQ---RVL----KRHISTGKPPD 280 (313)
Q Consensus 229 ~Li~d~~~lllDE----~~~~~l~~l~~~----~i~vtHd~~~~~~---rv~----griv~~G~~~e 280 (313)
+|++|+|+..||. .+++.|.++.++ .+++|||++++.. |++ |+++..|++++
T Consensus 152 llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~ 218 (220)
T cd03265 152 VLFLDEPTIGLDPQTRAHVWEYIEKLKEEFGMTILLTTHYMEEAEQLCDRVAIIDHGRIIAEGTPEE 218 (220)
T ss_pred EEEEcCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEeCChHH
Confidence 9999999999999 455555555432 4799999999876 554 88887777655
|
In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-37 Score=294.26 Aligned_cols=202 Identities=16% Similarity=0.166 Sum_probs=164.7
Q ss_pred EEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCC--------
Q 021362 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP-------- 148 (313)
Q Consensus 77 ~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~-------- 148 (313)
||+++||++.|+.......+|+|+||+|++||++||+||||||||||+|+|+|+++ |++|+|.++|.+.
T Consensus 1 mi~i~~l~~~y~~~~~~~~il~~vsl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~~---p~~G~I~~~g~~i~~~~~~~~ 77 (343)
T PRK11153 1 MIELKNISKVFPQGGRTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLER---PTSGRVLVDGQDLTALSEKEL 77 (343)
T ss_pred CEEEEeEEEEeCCCCCceEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC---CCceEEEECCEECCcCCHHHH
Confidence 48999999999721111239999999999999999999999999999999999999 9999999999653
Q ss_pred ---CCeEEEEecCCCCCCcccCCcccChHHHHHhcCCCCCccHHHHHHHHHHhhcC--CCccCCCCCCcCCCcchhhhhh
Q 021362 149 ---PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILV 223 (313)
Q Consensus 149 ---~~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~~~~~LSgG~kqRv~ia~al 223 (313)
.+.++|++|++..++ .+|+.||+.+....++.+.....+++.++++.++.. .++++.+||||||||++||+++
T Consensus 78 ~~~~~~ig~v~q~~~l~~--~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qRv~lAraL 155 (343)
T PRK11153 78 RKARRQIGMIFQHFNLLS--SRTVFDNVALPLELAGTPKAEIKARVTELLELVGLSDKADRYPAQLSGGQKQRVAIARAL 155 (343)
T ss_pred HHHhcCEEEEeCCCccCC--CCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHH
Confidence 245999999965443 489999999876655544333445678888888843 4567779999999999999999
Q ss_pred ccCceEEEEcCCccccCh----hhHHHHHhhcc----ceEEEEcChHHHHH---HHh----hcccccCCchHHHH
Q 021362 224 GLQHKVVIVDGNYLFLDG----GVWKDVSSMFD----EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAK 283 (313)
Q Consensus 224 ~~~ar~Li~d~~~lllDE----~~~~~l~~l~~----~~i~vtHd~~~~~~---rv~----griv~~G~~~ev~~ 283 (313)
+.++++|++|+|+..||. .+++.|+++.+ ..+++|||++++.. |++ |++++.|+++++..
T Consensus 156 ~~~p~iLlLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiilvtH~~~~i~~~~d~v~~l~~G~i~~~g~~~~~~~ 230 (343)
T PRK11153 156 ASNPKVLLCDEATSALDPATTRSILELLKDINRELGLTIVLITHEMDVVKRICDRVAVIDAGRLVEQGTVSEVFS 230 (343)
T ss_pred HcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 999999999999999999 56666666643 24699999999876 555 89999998887753
|
|
| >COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.9e-38 Score=272.39 Aligned_cols=199 Identities=17% Similarity=0.170 Sum_probs=178.1
Q ss_pred EEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCC----CCeE
Q 021362 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP----PDVA 152 (313)
Q Consensus 77 ~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~----~~~i 152 (313)
+|++++|+|+||++. +++|+||++++|++.|++|||||||||++|+|.|++. |++|+|.|+|.+. ..+|
T Consensus 2 ~L~ie~vtK~Fg~k~----av~~isf~v~~G~i~GllG~NGAGKTTtfRmILglle---~~~G~I~~~g~~~~~~~~~rI 74 (300)
T COG4152 2 ALEIEGVTKSFGDKK----AVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLE---PTEGEITWNGGPLSQEIKNRI 74 (300)
T ss_pred ceEEecchhccCcee----eecceeeeecCCeEEEeecCCCCCccchHHHHhccCC---ccCceEEEcCcchhhhhhhhc
Confidence 589999999999998 9999999999999999999999999999999999999 9999999999774 4579
Q ss_pred EEEecCCCCCCcccCCcccChHHHHHhcCCCCCccHHHHHHHHHHhh--cCCCccCCCCCCcCCCcchhhhhhccCceEE
Q 021362 153 TVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLR--NQGSVYAPSFDHGVGDPVEDDILVGLQHKVV 230 (313)
Q Consensus 153 ~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~~~~~~~~~~~~l~~l~--~~~~~~~~~LSgG~kqRv~ia~al~~~ar~L 230 (313)
||+|.+...++. +||.|.+.|.+...|++.++...++..+|++++ ....+++.+||.|++|++.+..++++.+.++
T Consensus 75 GyLPEERGLy~k--~tv~dql~yla~LkGm~~~e~~~~~~~wLer~~i~~~~~~kIk~LSKGnqQKIQfisaviHePeLl 152 (300)
T COG4152 75 GYLPEERGLYPK--MTVEDQLKYLAELKGMPKAEIQKKLQAWLERLEIVGKKTKKIKELSKGNQQKIQFISAVIHEPELL 152 (300)
T ss_pred ccChhhhccCcc--CcHHHHHHHHHHhcCCcHHHHHHHHHHHHHhccccccccchHHHhhhhhhHHHHHHHHHhcCCCEE
Confidence 999999765554 999999999999999999999999999999999 4566788899999999999999999999999
Q ss_pred EEcCCccccChh----hHHHHHhhccc---eEEEEcChHHHHH---HHh----hcccccCCchHHHHH
Q 021362 231 IVDGNYLFLDGG----VWKDVSSMFDE---KWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAKW 284 (313)
Q Consensus 231 i~d~~~lllDE~----~~~~l~~l~~~---~i~vtHd~~~~~~---rv~----griv~~G~~~ev~~~ 284 (313)
|+|+|+..||+- +.+.|.++.++ +||.||.|+.+.+ +++ |+.|.+|+..++.+.
T Consensus 153 ILDEPFSGLDPVN~elLk~~I~~lk~~GatIifSsH~Me~vEeLCD~llmL~kG~~V~~G~v~~ir~~ 220 (300)
T COG4152 153 ILDEPFSGLDPVNVELLKDAIFELKEEGATIIFSSHRMEHVEELCDRLLMLKKGQTVLYGTVEDIRRS 220 (300)
T ss_pred EecCCccCCChhhHHHHHHHHHHHHhcCCEEEEecchHHHHHHHhhhhheecCCceEEeccHHHHHHh
Confidence 999999999993 34444455544 4799999999988 666 999999999998764
|
|
| >cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-37 Score=279.04 Aligned_cols=196 Identities=18% Similarity=0.235 Sum_probs=159.1
Q ss_pred EEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCC---------
Q 021362 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP--------- 148 (313)
Q Consensus 78 l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~--------- 148 (313)
|+++|+++.|++.. +|+|+||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|.+.
T Consensus 1 l~~~~l~~~~~~~~----~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~---p~~G~i~~~g~~~~~~~~~~~~ 73 (235)
T cd03261 1 IELRGLTKSFGGRT----VLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLR---PDSGEVLIDGEDISGLSEAELY 73 (235)
T ss_pred CeEEEEEEEECCEE----EEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCceEEEECCEEccccChhhHH
Confidence 46899999998766 9999999999999999999999999999999999999 9999999998642
Q ss_pred --CCeEEEEecCCCCCCcccCCcccChHHHHHhc-CCCCCccHHHHHHHHHHhhcC--CCccCCCCCCcCCCcchhhhhh
Q 021362 149 --PDVATVLPMDGFHLYLSQLDAMEDPKEAHARR-GAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILV 223 (313)
Q Consensus 149 --~~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~-~~~~~~~~~~~~~~l~~l~~~--~~~~~~~LSgG~kqRv~ia~al 223 (313)
.+.++|++|++..++ .+|+.+|+.+....+ +.......+++.++++.++.. .++++.+||||||||++||+++
T Consensus 74 ~~~~~i~~v~q~~~~~~--~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~ia~al 151 (235)
T cd03261 74 RLRRRMGMLFQSGALFD--SLTVFENVAFPLREHTRLSEEEIREIVLEKLEAVGLRGAEDLYPAELSGGMKKRVALARAL 151 (235)
T ss_pred HHhcceEEEccCcccCC--CCcHHHHHHHHHhhccCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHH
Confidence 235899999965443 489999998864432 222222345677888888743 4667779999999999999999
Q ss_pred ccCceEEEEcCCccccCh----hhHHHHHhhcc----ceEEEEcChHHHHH---HHh----hcccccCCchHHH
Q 021362 224 GLQHKVVIVDGNYLFLDG----GVWKDVSSMFD----EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVA 282 (313)
Q Consensus 224 ~~~ar~Li~d~~~lllDE----~~~~~l~~l~~----~~i~vtHd~~~~~~---rv~----griv~~G~~~ev~ 282 (313)
+.++++|++|+|+..||. .+++.|+++.. ..+++|||++++.. |++ |++++.|+++++.
T Consensus 152 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 225 (235)
T cd03261 152 ALDPELLLYDEPTAGLDPIASGVIDDLIRSLKKELGLTSIMVTHDLDTAFAIADRIAVLYDGKIVAEGTPEELR 225 (235)
T ss_pred hcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhcCEEEEEECCeEEEecCHHHHc
Confidence 999999999999999999 55566666543 24799999998876 554 8888888877764
|
The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-37 Score=290.61 Aligned_cols=209 Identities=11% Similarity=0.140 Sum_probs=164.5
Q ss_pred ccEEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhccc-CCCCceeecCCCCC-----
Q 021362 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKI-WPQKASSFDSQVKP----- 148 (313)
Q Consensus 75 m~~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~-~p~~G~i~~~g~~~----- 148 (313)
|++|+++||++.|+...+...+|+|+||+|++||++||+|+||||||||+++|+|+++.. .|++|+|.++|++.
T Consensus 1 ~~~L~v~~l~~~y~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTLl~~i~Gl~~~~~~~~~G~i~~~g~~i~~~~~ 80 (330)
T PRK15093 1 MPLLDIRNLTIEFKTSDGWVKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVTKDNWRVTADRMRFDDIDLLRLSP 80 (330)
T ss_pred CCeEEEeeeEEEEeCCCCCEEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHHccCCCCCCCcceEEEECCEECCcCCH
Confidence 568999999999953222234999999999999999999999999999999999998510 14899999999653
Q ss_pred -------CCeEEEEecCCCCCCcccCCcccChHHHHHhc---CC--CC-CccHHHHHHHHHHhhcCC-----CccCCCCC
Q 021362 149 -------PDVATVLPMDGFHLYLSQLDAMEDPKEAHARR---GA--PW-TFNPLLLLNCLKNLRNQG-----SVYAPSFD 210 (313)
Q Consensus 149 -------~~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~---~~--~~-~~~~~~~~~~l~~l~~~~-----~~~~~~LS 210 (313)
.+.++|+||++....++.+|+.+++.+..... +. .. .+..+++.++|+.++... +.++.+||
T Consensus 81 ~~~~~~~~~~i~~v~Q~~~~~l~p~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~~~p~~LS 160 (330)
T PRK15093 81 RERRKLVGHNVSMIFQEPQSCLDPSERVGRQLMQNIPGWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDAMRSFPYELT 160 (330)
T ss_pred HHHHHHhCCCEEEEecCcchhcCccccHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHCCCCChHHHHhCCchhCC
Confidence 13599999997654455689999987643221 10 01 123456788999988542 46777999
Q ss_pred CcCCCcchhhhhhccCceEEEEcCCccccCh----hhHHHHHhhccc----eEEEEcChHHHHH---HHh----hccccc
Q 021362 211 HGVGDPVEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFDE----KWFIEVDLDTAMQ---RVL----KRHIST 275 (313)
Q Consensus 211 gG~kqRv~ia~al~~~ar~Li~d~~~lllDE----~~~~~l~~l~~~----~i~vtHd~~~~~~---rv~----griv~~ 275 (313)
|||+|||+||+|++.++++|++|+|+..||. .+++.|+++.++ .||||||++++.. |++ |++++.
T Consensus 161 gG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~tii~itHdl~~v~~~~dri~vm~~G~ive~ 240 (330)
T PRK15093 161 EGECQKVMIAIALANQPRLLIADEPTNAMEPTTQAQIFRLLTRLNQNNNTTILLISHDLQMLSQWADKINVLYCGQTVET 240 (330)
T ss_pred HHHHHHHHHHHHHHCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEE
Confidence 9999999999999999999999999999999 556666665442 4799999999987 555 999999
Q ss_pred CCchHHHH
Q 021362 276 GKPPDVAK 283 (313)
Q Consensus 276 G~~~ev~~ 283 (313)
|+++++..
T Consensus 241 g~~~~i~~ 248 (330)
T PRK15093 241 APSKELVT 248 (330)
T ss_pred CCHHHHHh
Confidence 99888754
|
|
| >PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-37 Score=290.09 Aligned_cols=208 Identities=15% Similarity=0.154 Sum_probs=167.0
Q ss_pred CCccEEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCC---CceeecCCCCC-
Q 021362 73 REIPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQ---KASSFDSQVKP- 148 (313)
Q Consensus 73 ~~m~~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~---~G~i~~~g~~~- 148 (313)
..+++|+++||++.|+...+...+|+||||+|++||++||+|+||||||||+++|+|+++ |+ +|+|.++|.+.
T Consensus 8 ~~~~~L~i~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~~~l~Gl~~---p~~~~sG~I~~~G~~i~ 84 (330)
T PRK09473 8 QADALLDVKDLRVTFSTPDGDVTAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLA---ANGRIGGSATFNGREIL 84 (330)
T ss_pred CCCceEEEeCeEEEEecCCCCEEEEeeeEEEEcCCCEEEEECCCCchHHHHHHHHHcCCC---CCCCCCeEEEECCEECC
Confidence 345689999999999643223349999999999999999999999999999999999998 85 99999999763
Q ss_pred -----------CCeEEEEecCCCCCCcccCCcccChHHHHHhcC-CCCCccHHHHHHHHHHhhcCC-----CccCCCCCC
Q 021362 149 -----------PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRG-APWTFNPLLLLNCLKNLRNQG-----SVYAPSFDH 211 (313)
Q Consensus 149 -----------~~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~-~~~~~~~~~~~~~l~~l~~~~-----~~~~~~LSg 211 (313)
.+.++|+||+++...++.+++.+++.+....++ .......+++.++|+.++... +.++.+|||
T Consensus 85 ~~~~~~~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~L~~vgL~~~~~~~~~~p~~LSg 164 (330)
T PRK09473 85 NLPEKELNKLRAEQISMIFQDPMTSLNPYMRVGEQLMEVLMLHKGMSKAEAFEESVRMLDAVKMPEARKRMKMYPHEFSG 164 (330)
T ss_pred cCCHHHHHHHhcCCEEEEEcCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCChHHHhcCCcccCCH
Confidence 136999999975444556899999877654432 222333456788888887432 446779999
Q ss_pred cCCCcchhhhhhccCceEEEEcCCccccCh----hhHHHHHhhccc----eEEEEcChHHHHH---HHh----hcccccC
Q 021362 212 GVGDPVEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFDE----KWFIEVDLDTAMQ---RVL----KRHISTG 276 (313)
Q Consensus 212 G~kqRv~ia~al~~~ar~Li~d~~~lllDE----~~~~~l~~l~~~----~i~vtHd~~~~~~---rv~----griv~~G 276 (313)
||+|||+||+|++.++++|++|+++..||. .+++.|+++.++ .+|||||++++.. |++ |++++.|
T Consensus 165 G~~QRv~IArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~~~~~~~Dri~vm~~G~ive~g 244 (330)
T PRK09473 165 GMRQRVMIAMALLCRPKLLIADEPTTALDVTVQAQIMTLLNELKREFNTAIIMITHDLGVVAGICDKVLVMYAGRTMEYG 244 (330)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEEC
Confidence 999999999999999999999999999999 455555555432 4799999999876 555 9999999
Q ss_pred CchHHHH
Q 021362 277 KPPDVAK 283 (313)
Q Consensus 277 ~~~ev~~ 283 (313)
+++++..
T Consensus 245 ~~~~i~~ 251 (330)
T PRK09473 245 NARDVFY 251 (330)
T ss_pred CHHHHHh
Confidence 9988865
|
|
| >TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-37 Score=287.48 Aligned_cols=199 Identities=15% Similarity=0.111 Sum_probs=168.2
Q ss_pred EEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCC-------C
Q 021362 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP-------P 149 (313)
Q Consensus 77 ~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~-------~ 149 (313)
+++++|++|.|++.. +|+|+||+|++||++||+||||||||||+++|+|+++ |++|+|.++|.+. .
T Consensus 2 ~l~~~~l~~~~~~~~----~l~~is~~i~~Gei~~l~G~NGaGKTTLl~~l~Gl~~---~~~G~i~i~g~~~~~~~~~~~ 74 (301)
T TIGR03522 2 SIRVSSLTKLYGTQN----ALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLP---PDSGSVQVCGEDVLQNPKEVQ 74 (301)
T ss_pred EEEEEEEEEEECCEE----EEEEeEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCC---CCceEEEECCEEcccChHHHH
Confidence 589999999998766 9999999999999999999999999999999999999 9999999999653 2
Q ss_pred CeEEEEecCCCCCCcccCCcccChHHHHHhcCCCCCccHHHHHHHHHHhhcC--CCccCCCCCCcCCCcchhhhhhccCc
Q 021362 150 DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGLQH 227 (313)
Q Consensus 150 ~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~~~~~LSgG~kqRv~ia~al~~~a 227 (313)
+.++|++|++..++ .+|+.||+.+....++.+.....+++.++++.++.. .++++..||+|||||++||+|++.++
T Consensus 75 ~~ig~~~q~~~l~~--~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la~al~~~p 152 (301)
T TIGR03522 75 RNIGYLPEHNPLYL--DMYVREYLQFIAGIYGMKGQLLKQRVEEMIELVGLRPEQHKKIGQLSKGYRQRVGLAQALIHDP 152 (301)
T ss_pred hceEEecCCCCCCC--CCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCchhhCCHHHHHHHHHHHHHhcCC
Confidence 35999999965433 489999999877666654444456678888888843 46778899999999999999999999
Q ss_pred eEEEEcCCccccCh----hhHHHHHhhccc--eEEEEcChHHHHH---HHh----hcccccCCchHHHHH
Q 021362 228 KVVIVDGNYLFLDG----GVWKDVSSMFDE--KWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAKW 284 (313)
Q Consensus 228 r~Li~d~~~lllDE----~~~~~l~~l~~~--~i~vtHd~~~~~~---rv~----griv~~G~~~ev~~~ 284 (313)
++|++|+|+..||. .+++.|+++.+. .+++||+++++.. |++ |++++.|+++++...
T Consensus 153 ~lliLDEPt~gLD~~~~~~l~~~l~~~~~~~tiii~sH~l~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 222 (301)
T TIGR03522 153 KVLILDEPTTGLDPNQLVEIRNVIKNIGKDKTIILSTHIMQEVEAICDRVIIINKGKIVADKKLDELSAA 222 (301)
T ss_pred CEEEEcCCcccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHHh
Confidence 99999999999999 566666666432 4799999999887 555 999999999988654
|
Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility. |
| >PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-37 Score=284.95 Aligned_cols=203 Identities=14% Similarity=0.140 Sum_probs=164.8
Q ss_pred EEEEccceEEcccccc-ccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCCC------
Q 021362 77 VVEARCMDEVYDALAQ-RLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPP------ 149 (313)
Q Consensus 77 ~l~~~~l~~~y~~~~~-~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~~------ 149 (313)
.|+++||++.|+.... ...+|+|+||+|++||++||+||||||||||+++|+|+++ |++|+|+++|.+..
T Consensus 2 ~l~~~~l~~~y~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~---p~~G~i~~~g~~~~~~~~~~ 78 (287)
T PRK13637 2 SIKIENLTHIYMEGTPFEKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLK---PTSGKIIIDGVDITDKKVKL 78 (287)
T ss_pred EEEEEEEEEECCCCCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC---CCccEEEECCEECCCcCccH
Confidence 4899999999975211 1239999999999999999999999999999999999999 99999999996532
Q ss_pred ----CeEEEEecCCCCCCcccCCcccChHHHHHhcCCCCCccHHHHHHHHHHhhcC----CCccCCCCCCcCCCcchhhh
Q 021362 150 ----DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ----GSVYAPSFDHGVGDPVEDDI 221 (313)
Q Consensus 150 ----~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~----~~~~~~~LSgG~kqRv~ia~ 221 (313)
..++|+||++..... ..|+++|+.+.....+.......+++.++++.++.. .+.++.+|||||+||++||+
T Consensus 79 ~~~~~~ig~v~q~~~~~~~-~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~~LSgGq~qrv~iAr 157 (287)
T PRK13637 79 SDIRKKVGLVFQYPEYQLF-EETIEKDIAFGPINLGLSEEEIENRVKRAMNIVGLDYEDYKDKSPFELSGGQKRRVAIAG 157 (287)
T ss_pred HHHhhceEEEecCchhccc-cccHHHHHHhHHHHCCCCHHHHHHHHHHHHHHcCCCchhhccCCcccCCHHHHHHHHHHH
Confidence 358999998632221 369999999876555544444455678889988853 46677899999999999999
Q ss_pred hhccCceEEEEcCCccccCh----hhHHHHHhhccc----eEEEEcChHHHHH---HHh----hcccccCCchHHHH
Q 021362 222 LVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFDE----KWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAK 283 (313)
Q Consensus 222 al~~~ar~Li~d~~~lllDE----~~~~~l~~l~~~----~i~vtHd~~~~~~---rv~----griv~~G~~~ev~~ 283 (313)
|++.++++|++|+|+..||. .+++.|+++.++ ++++|||++++.. |++ |++++.|+++++..
T Consensus 158 aL~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~drv~~l~~G~i~~~g~~~~~~~ 234 (287)
T PRK13637 158 VVAMEPKILILDEPTAGLDPKGRDEILNKIKELHKEYNMTIILVSHSMEDVAKLADRIIVMNKGKCELQGTPREVFK 234 (287)
T ss_pred HHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 99999999999999999999 566666666432 4799999999876 655 99999999988754
|
|
| >COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-37 Score=259.95 Aligned_cols=197 Identities=16% Similarity=0.137 Sum_probs=162.7
Q ss_pred EEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCC------CC
Q 021362 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP------PD 150 (313)
Q Consensus 77 ~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~------~~ 150 (313)
||.++++.+.|+..+ -..+++|+.||+++|+||||||||||+++|+|+.. |.+|+|+++|++. .+
T Consensus 1 ~l~L~~V~~~y~~~~------~~fdl~v~~ge~vAi~GpSGaGKSTLLnLIAGF~~---P~~G~i~i~g~d~t~~~P~~R 71 (231)
T COG3840 1 MLALDDVRFSYGHLP------MRFDLTVPAGEIVAILGPSGAGKSTLLNLIAGFET---PASGEILINGVDHTASPPAER 71 (231)
T ss_pred CccccceEEeeCcce------EEEEEeecCCcEEEEECCCCccHHHHHHHHHhccC---CCCceEEEcCeecCcCCcccC
Confidence 467899999998754 45788999999999999999999999999999999 9999999999872 34
Q ss_pred eEEEEecCCCCCCcccCCcccChHHHHHhcCCCCCccHHHHHHHHHHhh--cCCCccCCCCCCcCCCcchhhhhhccCce
Q 021362 151 VATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLR--NQGSVYAPSFDHGVGDPVEDDILVGLQHK 228 (313)
Q Consensus 151 ~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~~~~~~~~~~~~l~~l~--~~~~~~~~~LSgG~kqRv~ia~al~~~ar 228 (313)
-++++||+...+. ++||.+|+.++..-.-.-.+.+++++..++.++| ...++.+.+|||||||||++|++++++-.
T Consensus 72 PVSmlFQEnNLFa--HLtV~qNigLGl~P~LkL~a~~r~~v~~aa~~vGl~~~~~RLP~~LSGGqRQRvALARclvR~~P 149 (231)
T COG3840 72 PVSMLFQENNLFA--HLTVAQNIGLGLSPGLKLNAEQREKVEAAAAQVGLAGFLKRLPGELSGGQRQRVALARCLVREQP 149 (231)
T ss_pred Chhhhhhccccch--hhhhhhhhcccCCcccccCHHHHHHHHHHHHHhChhhHhhhCccccCchHHHHHHHHHHHhccCC
Confidence 5899999965444 6999999988643211123567888999999999 45667778999999999999999999999
Q ss_pred EEEEcCCccccChh----hHHHHHhhccc----eEEEEcChHHHHH---HHh----hcccccCCchHHHHH
Q 021362 229 VVIVDGNYLFLDGG----VWKDVSSMFDE----KWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAKW 284 (313)
Q Consensus 229 ~Li~d~~~lllDE~----~~~~l~~l~~~----~i~vtHd~~~~~~---rv~----griv~~G~~~ev~~~ 284 (313)
+|++|+|+.-||+. .+..+.+++++ .+||||.++.+.+ |++ ||+.+.|..+++...
T Consensus 150 ilLLDEPFsALdP~LR~eMl~Lv~~l~~E~~~TllmVTH~~~Da~~ia~~~~fl~~Gri~~~g~~~~~~~~ 220 (231)
T COG3840 150 ILLLDEPFSALDPALRAEMLALVSQLCDERKMTLLMVTHHPEDAARIADRVVFLDNGRIAAQGSTQELLSG 220 (231)
T ss_pred eEEecCchhhcCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHHhhhceEEEeCCEEEeeccHHHHhcc
Confidence 99999999999994 44455555544 3699999999988 665 999999998887643
|
|
| >PRK13651 cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-37 Score=286.62 Aligned_cols=202 Identities=12% Similarity=0.117 Sum_probs=165.0
Q ss_pred EEEEccceEEcccccc-ccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCC-------
Q 021362 77 VVEARCMDEVYDALAQ-RLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP------- 148 (313)
Q Consensus 77 ~l~~~~l~~~y~~~~~-~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~------- 148 (313)
+|+++|+++.|++... ...+|+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|+++|.+.
T Consensus 2 ~i~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl~~---p~~G~i~~~g~~~~~~~~~~ 78 (305)
T PRK13651 2 QIKVKNIVKIFNKKLPTELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLL---PDTGTIEWIFKDEKNKKKTK 78 (305)
T ss_pred EEEEEEEEEEECCCCCccccceeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCC---CCCcEEEEeceecccccccc
Confidence 5899999999975311 1238999999999999999999999999999999999999 9999999986432
Q ss_pred -------------------------CCeEEEEecCCC-CCCcccCCcccChHHHHHhcCCCCCccHHHHHHHHHHhhcC-
Q 021362 149 -------------------------PDVATVLPMDGF-HLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ- 201 (313)
Q Consensus 149 -------------------------~~~i~~v~qd~~-~~~~~~ltv~e~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~- 201 (313)
.+.++|+||++. .++. .|+.||+.++....+.+.....+++.++++.++..
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~--~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~ 156 (305)
T PRK13651 79 EKEKVLEKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQLFE--QTIEKDIIFGPVSMGVSKEEAKKRAAKYIELVGLDE 156 (305)
T ss_pred cccccccccccccccccccchHHHHHhceEEEeeCccccccc--ccHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCCh
Confidence 234899999852 3332 69999999876665655445556788899998853
Q ss_pred --CCccCCCCCCcCCCcchhhhhhccCceEEEEcCCccccCh----hhHHHHHhhccc---eEEEEcChHHHHH---HHh
Q 021362 202 --GSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFDE---KWFIEVDLDTAMQ---RVL 269 (313)
Q Consensus 202 --~~~~~~~LSgG~kqRv~ia~al~~~ar~Li~d~~~lllDE----~~~~~l~~l~~~---~i~vtHd~~~~~~---rv~ 269 (313)
.++++.+||||||||++||++++.++++|++|+|+..||. .+++.|+++.+. +|++|||++.+.. |++
T Consensus 157 ~~~~~~~~~LSgGqkqrvalA~aL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~~~~~~~adrv~ 236 (305)
T PRK13651 157 SYLQRSPFELSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNKQGKTIILVTHDLDNVLEWTKRTI 236 (305)
T ss_pred hhhhCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeeCHHHHHHhCCEEE
Confidence 4667779999999999999999999999999999999999 455666655432 4799999998876 665
Q ss_pred ----hcccccCCchHHHH
Q 021362 270 ----KRHISTGKPPDVAK 283 (313)
Q Consensus 270 ----griv~~G~~~ev~~ 283 (313)
|++++.|+++++..
T Consensus 237 vl~~G~i~~~g~~~~~~~ 254 (305)
T PRK13651 237 FFKDGKIIKDGDTYDILS 254 (305)
T ss_pred EEECCEEEEECCHHHHhc
Confidence 99999999988754
|
|
| >cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-37 Score=273.62 Aligned_cols=195 Identities=18% Similarity=0.194 Sum_probs=158.3
Q ss_pred EEEccceEEccc--cccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCC-------
Q 021362 78 VEARCMDEVYDA--LAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP------- 148 (313)
Q Consensus 78 l~~~~l~~~y~~--~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~------- 148 (313)
|+++|+++.|++ .. +|+|+||++++|++++|+||||||||||+++|+|+++ |++|+|.++|.+.
T Consensus 1 l~~~~l~~~~~~~~~~----il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---~~~G~i~~~g~~~~~~~~~~ 73 (220)
T cd03263 1 LQIRNLTKTYKKGTKP----AVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELR---PTSGTAYINGYSIRTDRKAA 73 (220)
T ss_pred CEEEeeEEEeCCCCce----eecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC---CCCcEEEECCEecccchHHH
Confidence 578999999976 44 9999999999999999999999999999999999999 9999999999763
Q ss_pred CCeEEEEecCCCCCCcccCCcccChHHHHHhcCCCCCccHHHHHHHHHHhhc--CCCccCCCCCCcCCCcchhhhhhccC
Q 021362 149 PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDILVGLQ 226 (313)
Q Consensus 149 ~~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~~~~~~~~~~~~l~~l~~--~~~~~~~~LSgG~kqRv~ia~al~~~ 226 (313)
.+.++|++|++..+. .+|+.+|+.+....++.+.....+++.++++.++. ..+.++.+||+||+||++||++++.+
T Consensus 74 ~~~i~~v~q~~~~~~--~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~ 151 (220)
T cd03263 74 RQSLGYCPQFDALFD--ELTVREHLRFYARLKGLPKSEIKEEVELLLRVLGLTDKANKRARTLSGGMKRKLSLAIALIGG 151 (220)
T ss_pred hhhEEEecCcCCccc--cCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHhChhhhCCHHHHHHHHHHHHHhcC
Confidence 235899999965433 48999999887655543333334567788888874 34567779999999999999999999
Q ss_pred ceEEEEcCCccccCh----hhHHHHHhhccc--eEEEEcChHHHHH---HHh----hcccccCCchHH
Q 021362 227 HKVVIVDGNYLFLDG----GVWKDVSSMFDE--KWFIEVDLDTAMQ---RVL----KRHISTGKPPDV 281 (313)
Q Consensus 227 ar~Li~d~~~lllDE----~~~~~l~~l~~~--~i~vtHd~~~~~~---rv~----griv~~G~~~ev 281 (313)
+++|++|+|+..||. .+++.|+++.+. .+++|||++.+.. +++ |++++.|+++++
T Consensus 152 p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~~~ 219 (220)
T cd03263 152 PSVLLLDEPTSGLDPASRRAIWDLILEVRKGRSIILTTHSMDEAEALCDRIAIMSDGKLRCIGSPQEL 219 (220)
T ss_pred CCEEEECCCCCCCCHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhcCEEEEEECCEEEecCCHHHc
Confidence 999999999999999 455555555442 4799999999876 444 888888877653
|
Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages. |
| >cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-37 Score=275.88 Aligned_cols=201 Identities=17% Similarity=0.169 Sum_probs=160.8
Q ss_pred EEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCC--------
Q 021362 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP-------- 148 (313)
Q Consensus 77 ~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~-------- 148 (313)
||+++|+++.|++..+...+|+++||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.+.
T Consensus 1 ~i~~~~l~~~~~~~~~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~~~~~~~~~~ 77 (233)
T cd03258 1 MIELKNVSKVFGDTGGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLER---PTSGSVLVDGTDLTLLSGKEL 77 (233)
T ss_pred CeEEecceEEccCCCCceeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCceEEECCEEcccCCHHHH
Confidence 48899999999865101129999999999999999999999999999999999999 9999999999753
Q ss_pred ---CCeEEEEecCCCCCCcccCCcccChHHHHHhcCCCCCccHHHHHHHHHHhhcC--CCccCCCCCCcCCCcchhhhhh
Q 021362 149 ---PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILV 223 (313)
Q Consensus 149 ---~~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~~~~~LSgG~kqRv~ia~al 223 (313)
.+.++|++|++..++ .+|+.||+.+....++.......+.+.++++.++.. .+..+.+|||||+||++||+++
T Consensus 78 ~~~~~~i~~~~q~~~~~~--~~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al 155 (233)
T cd03258 78 RKARRRIGMIFQHFNLLS--SRTVFENVALPLEIAGVPKAEIEERVLELLELVGLEDKADAYPAQLSGGQKQRVGIARAL 155 (233)
T ss_pred HHHHhheEEEccCcccCC--CCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhhhhcChhhCCHHHHHHHHHHHHH
Confidence 235899999965443 489999998765444332222345677888888743 4567779999999999999999
Q ss_pred ccCceEEEEcCCccccCh----hhHHHHHhhcc----ceEEEEcChHHHHH---HHh----hcccccCCchHHH
Q 021362 224 GLQHKVVIVDGNYLFLDG----GVWKDVSSMFD----EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVA 282 (313)
Q Consensus 224 ~~~ar~Li~d~~~lllDE----~~~~~l~~l~~----~~i~vtHd~~~~~~---rv~----griv~~G~~~ev~ 282 (313)
+.++++|++|+|+..||. .+++.|.++.+ ..+++|||++++.. +++ |++++.|+++++.
T Consensus 156 ~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 229 (233)
T cd03258 156 ANNPKVLLCDEATSALDPETTQSILALLRDINRELGLTIVLITHEMEVVKRICDRVAVMEKGEVVEEGTVEEVF 229 (233)
T ss_pred hcCCCEEEecCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHHHh
Confidence 999999999999999999 45566666543 24799999999866 544 8888888876653
|
Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-37 Score=292.94 Aligned_cols=190 Identities=16% Similarity=0.188 Sum_probs=159.6
Q ss_pred EEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCC------------CCeE
Q 021362 85 EVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP------------PDVA 152 (313)
Q Consensus 85 ~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~------------~~~i 152 (313)
|.|++.. +|+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.+. .+.+
T Consensus 1 ~~~~~~~----~l~~vs~~i~~Gei~~l~G~sGsGKSTLLr~L~Gl~~---p~~G~I~i~G~~i~~~~~~~~~~~rr~~i 73 (363)
T TIGR01186 1 KKTGGKK----GVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIE---PTAGQIFIDGENIMKQSPVELREVRRKKI 73 (363)
T ss_pred CccCCce----eEEeeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCC---CCceEEEECCEECCcCCHHHHHHHHhCcE
Confidence 4677666 9999999999999999999999999999999999999 9999999999653 3469
Q ss_pred EEEecCCCCCCcccCCcccChHHHHHhcCCCCCccHHHHHHHHHHhhc--CCCccCCCCCCcCCCcchhhhhhccCceEE
Q 021362 153 TVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDILVGLQHKVV 230 (313)
Q Consensus 153 ~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~~~~~~~~~~~~l~~l~~--~~~~~~~~LSgG~kqRv~ia~al~~~ar~L 230 (313)
+|++|+...++ ++|+.||+.+.....+.+.....+++.++++.++. ..++++.+|||||||||+||+|++.++++|
T Consensus 74 ~~v~Q~~~l~~--~~TV~eNi~~~~~~~~~~~~~~~~~~~~~l~~vgL~~~~~~~p~~LSGGq~QRV~lARAL~~~p~iL 151 (363)
T TIGR01186 74 GMVFQQFALFP--HMTILQNTSLGPELLGWPEQERKEKALELLKLVGLEEYEHRYPDELSGGMQQRVGLARALAAEPDIL 151 (363)
T ss_pred EEEECCCcCCC--CCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEE
Confidence 99999965444 48999999998766665544456678899998884 356677899999999999999999999999
Q ss_pred EEcCCccccCh----hhHHHHHhhcc----ceEEEEcChHHHHH---HHh----hcccccCCchHHHH
Q 021362 231 IVDGNYLFLDG----GVWKDVSSMFD----EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAK 283 (313)
Q Consensus 231 i~d~~~lllDE----~~~~~l~~l~~----~~i~vtHd~~~~~~---rv~----griv~~G~~~ev~~ 283 (313)
++|+|+..||. .+.+.+.++.+ ..+|||||++++.. |++ |+++..|+++++..
T Consensus 152 LlDEP~saLD~~~r~~l~~~l~~l~~~~~~Tii~vTHd~~ea~~~~drI~vl~~G~iv~~g~~~ei~~ 219 (363)
T TIGR01186 152 LMDEAFSALDPLIRDSMQDELKKLQATLQKTIVFITHDLDEAIRIGDRIVIMKAGEIVQVGTPDEILR 219 (363)
T ss_pred EEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEeeCCHHHHHh
Confidence 99999999999 45555555432 24799999999877 655 99999999988754
|
This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact |
| >PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-37 Score=276.72 Aligned_cols=200 Identities=15% Similarity=0.185 Sum_probs=160.7
Q ss_pred ccEEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCC------
Q 021362 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP------ 148 (313)
Q Consensus 75 m~~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~------ 148 (313)
|+||+++|+++.|++.. +|+|+||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|.+.
T Consensus 1 m~~l~~~~l~~~~~~~~----~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~~~~~~~~ 73 (250)
T PRK11264 1 MSAIEVKNLVKKFHGQT----VLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQ---PEAGTIRVGDITIDTARSL 73 (250)
T ss_pred CCcEEEeceEEEECCee----eeccceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC---CCCeEEEECCEEccccccc
Confidence 45799999999998765 9999999999999999999999999999999999999 9999999988542
Q ss_pred ----------CCeEEEEecCCCCCCcccCCcccChHHHHHh-cCCCCCccHHHHHHHHHHhhcC--CCccCCCCCCcCCC
Q 021362 149 ----------PDVATVLPMDGFHLYLSQLDAMEDPKEAHAR-RGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGD 215 (313)
Q Consensus 149 ----------~~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~-~~~~~~~~~~~~~~~l~~l~~~--~~~~~~~LSgG~kq 215 (313)
.+.++|++|++..++ .+|+.||+.+.... .+.......+++.++++.++.. .+.++.+|||||+|
T Consensus 74 ~~~~~~~~~~~~~i~~v~q~~~~~~--~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~Gq~q 151 (250)
T PRK11264 74 SQQKGLIRQLRQHVGFVFQNFNLFP--HRTVLENIIEGPVIVKGEPKEEATARARELLAKVGLAGKETSYPRRLSGGQQQ 151 (250)
T ss_pred cchhhHHHHhhhhEEEEecCcccCC--CCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchhhCChhhCChHHHH
Confidence 235899999965443 47999999875432 2222222345677888888743 45677799999999
Q ss_pred cchhhhhhccCceEEEEcCCccccCh----hhHHHHHhhccc---eEEEEcChHHHHH---HHh----hcccccCCchHH
Q 021362 216 PVEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFDE---KWFIEVDLDTAMQ---RVL----KRHISTGKPPDV 281 (313)
Q Consensus 216 Rv~ia~al~~~ar~Li~d~~~lllDE----~~~~~l~~l~~~---~i~vtHd~~~~~~---rv~----griv~~G~~~ev 281 (313)
|++||++++.++++|++|+|+..||. .+++.|.++.+. .|++|||++++.. |++ |++++.|+++++
T Consensus 152 rv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 231 (250)
T PRK11264 152 RVAIARALAMRPEVILFDEPTSALDPELVGEVLNTIRQLAQEKRTMVIVTHEMSFARDVADRAIFMDQGRIVEQGPAKAL 231 (250)
T ss_pred HHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHHH
Confidence 99999999999999999999999999 445555555432 4699999999865 554 899888988777
Q ss_pred HH
Q 021362 282 AK 283 (313)
Q Consensus 282 ~~ 283 (313)
..
T Consensus 232 ~~ 233 (250)
T PRK11264 232 FA 233 (250)
T ss_pred hc
Confidence 43
|
|
| >PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-37 Score=283.92 Aligned_cols=202 Identities=11% Similarity=0.066 Sum_probs=164.7
Q ss_pred EEEEccceEEcccccc-ccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCCC------
Q 021362 77 VVEARCMDEVYDALAQ-RLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPP------ 149 (313)
Q Consensus 77 ~l~~~~l~~~y~~~~~-~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~~------ 149 (313)
.|+++|+++.|++..+ ...+|+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|++..
T Consensus 2 ~l~~~~l~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---p~~G~i~~~g~~i~~~~~~~ 78 (290)
T PRK13634 2 DITFQKVEHRYQYKTPFERRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQ---PTSGTVTIGERVITAGKKNK 78 (290)
T ss_pred EEEEEEEEEEECCCCcccccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC---CCCcEEEECCEECccccccc
Confidence 4899999999974211 1239999999999999999999999999999999999999 99999999997542
Q ss_pred ------CeEEEEecCCC-CCCcccCCcccChHHHHHhcCCCCCccHHHHHHHHHHhhcC---CCccCCCCCCcCCCcchh
Q 021362 150 ------DVATVLPMDGF-HLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ---GSVYAPSFDHGVGDPVED 219 (313)
Q Consensus 150 ------~~i~~v~qd~~-~~~~~~ltv~e~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~---~~~~~~~LSgG~kqRv~i 219 (313)
+.++|++|++. .++. .|+.||+.+.....+.+.....+++.++++.++.. .+.++.+|||||+||++|
T Consensus 79 ~~~~~~~~ig~v~q~~~~~l~~--~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrv~l 156 (290)
T PRK13634 79 KLKPLRKKVGIVFQFPEHQLFE--ETVEKDICFGPMNFGVSEEDAKQKAREMIELVGLPEELLARSPFELSGGQMRRVAI 156 (290)
T ss_pred hHHHHHhhEEEEeeCchhhhhh--hhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCChhhhhCCcccCCHHHHHHHHH
Confidence 35899999853 2332 69999999876555544433445678889998853 356778999999999999
Q ss_pred hhhhccCceEEEEcCCccccCh----hhHHHHHhhcc----ceEEEEcChHHHHH---HHh----hcccccCCchHHHH
Q 021362 220 DILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFD----EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAK 283 (313)
Q Consensus 220 a~al~~~ar~Li~d~~~lllDE----~~~~~l~~l~~----~~i~vtHd~~~~~~---rv~----griv~~G~~~ev~~ 283 (313)
|++++.++++|++|+|+..||. .+++.|+++.+ .+|++|||++++.. |++ |++++.|++.++..
T Consensus 157 AraL~~~P~llllDEPt~~LD~~~~~~l~~~L~~l~~~~g~tviiitHd~~~~~~~~drv~~l~~G~i~~~g~~~~~~~ 235 (290)
T PRK13634 157 AGVLAMEPEVLVLDEPTAGLDPKGRKEMMEMFYKLHKEKGLTTVLVTHSMEDAARYADQIVVMHKGTVFLQGTPREIFA 235 (290)
T ss_pred HHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHhc
Confidence 9999999999999999999999 55666666643 24799999999876 665 99999999888753
|
|
| >COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-37 Score=297.38 Aligned_cols=206 Identities=18% Similarity=0.220 Sum_probs=177.1
Q ss_pred cEEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCC----CceeecCCCC----
Q 021362 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQ----KASSFDSQVK---- 147 (313)
Q Consensus 76 ~~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~----~G~i~~~g~~---- 147 (313)
++|+++||++.|....+.+.+++||||+|++||++||+|.|||||||+++.|.|+++ +. +|+|.++|++
T Consensus 4 ~lL~V~nL~v~~~~~~~~~~~v~~vsf~v~~GE~lgIvGESGsGKSt~a~~i~gll~---~~~~~~~G~I~~~g~dl~~l 80 (539)
T COG1123 4 PLLEVENLTVEFATDGGRVPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLP---EGGRITSGEVILDGRDLLGL 80 (539)
T ss_pred ceEEEeceEEEEecCCcceeeeecceEEecCCcEEEEEcCCCCCHHHHHHHHhccCC---CCCcccceEEEECCcchhcC
Confidence 389999999999866444569999999999999999999999999999999999997 55 7999999975
Q ss_pred --------CCCeEEEEecCCCCCCcccCCcccChHHHHHhcC-CCCCccHHHHHHHHHHhhc--CC--CccCCCCCCcCC
Q 021362 148 --------PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRG-APWTFNPLLLLNCLKNLRN--QG--SVYAPSFDHGVG 214 (313)
Q Consensus 148 --------~~~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~-~~~~~~~~~~~~~l~~l~~--~~--~~~~~~LSgG~k 214 (313)
+.+.++|+||+++..+++.+|+.+.+......++ ....+..+++.++|+.++. .. ++++++||||||
T Consensus 81 ~~~~~r~~rg~~Ia~i~Q~p~~slnP~~tIg~Qi~E~~~~h~~~~~~ea~~~a~elL~~Vgl~~~~~~~~yPheLSGG~r 160 (539)
T COG1123 81 SEREMRKLRGKRIAMIFQDPMTSLNPVMTIGDQIREALRLHGKGSRAEARKRAVELLEQVGLPDPERRDRYPHQLSGGMR 160 (539)
T ss_pred CHHHHHHhccccEEEEecCchhhcCchhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHcCCCChhhhccCCcccCchHH
Confidence 3356999999999888888899999888776654 3456677888999999983 22 347779999999
Q ss_pred CcchhhhhhccCceEEEEcCCccccCh----hhHHHHHhhccc----eEEEEcChHHHHH---HHh----hcccccCCch
Q 021362 215 DPVEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFDE----KWFIEVDLDTAMQ---RVL----KRHISTGKPP 279 (313)
Q Consensus 215 qRv~ia~al~~~ar~Li~d~~~lllDE----~~~~~l~~l~~~----~i~vtHd~~~~~~---rv~----griv~~G~~~ 279 (313)
|||.||+|++.++++||.|+|+--||. ++++.|+++.++ .+|||||+..+.+ |++ |++++.|+++
T Consensus 161 QRv~iAmALa~~P~LLIaDEPTTaLDvt~q~qIL~llk~l~~e~g~a~l~ITHDl~Vva~~aDrv~Vm~~G~iVE~G~~~ 240 (539)
T COG1123 161 QRVMIAMALALKPKLLIADEPTTALDVTTQAQILDLLKDLQRELGMAVLFITHDLGVVAELADRVVVMYKGEIVETGPTE 240 (539)
T ss_pred HHHHHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHHHHHHHcCcEEEEEcCCHHHHHHhcCeEEEEECCEEEEecCHH
Confidence 999999999999999999999999999 566666666643 3799999999998 766 9999999999
Q ss_pred HHHHH
Q 021362 280 DVAKW 284 (313)
Q Consensus 280 ev~~~ 284 (313)
++...
T Consensus 241 ~i~~~ 245 (539)
T COG1123 241 EILSN 245 (539)
T ss_pred HHHhc
Confidence 99775
|
|
| >cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-37 Score=275.42 Aligned_cols=197 Identities=17% Similarity=0.235 Sum_probs=159.6
Q ss_pred EEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCC------CC
Q 021362 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP------PD 150 (313)
Q Consensus 77 ~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~------~~ 150 (313)
+|+++|+++.|++.. +|+|+||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|.+. .+
T Consensus 2 ~l~~~~l~~~~~~~~----il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---~~~G~i~~~g~~~~~~~~~~~ 74 (239)
T cd03296 2 SIEVRNVSKRFGDFV----ALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLER---PDSGTILFGGEDATDVPVQER 74 (239)
T ss_pred EEEEEeEEEEECCEE----eeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCceEEEECCEECCcCCcccc
Confidence 589999999998765 9999999999999999999999999999999999999 9999999998653 23
Q ss_pred eEEEEecCCCCCCcccCCcccChHHHHHhcCC----CCCccHHHHHHHHHHhhcC--CCccCCCCCCcCCCcchhhhhhc
Q 021362 151 VATVLPMDGFHLYLSQLDAMEDPKEAHARRGA----PWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVG 224 (313)
Q Consensus 151 ~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~----~~~~~~~~~~~~l~~l~~~--~~~~~~~LSgG~kqRv~ia~al~ 224 (313)
.++|++|++..+. .+|+.||+.+.....+. ......+++.++++.++.. .+.++.+||+||+||++||+|++
T Consensus 75 ~i~~v~q~~~~~~--~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~ 152 (239)
T cd03296 75 NVGFVFQHYALFR--HMTVFDNVAFGLRVKPRSERPPEAEIRAKVHELLKLVQLDWLADRYPAQLSGGQRQRVALARALA 152 (239)
T ss_pred ceEEEecCCcccC--CCCHHHHHhhhhhhccccccCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHh
Confidence 5899999965443 47999999876543322 1112234567788888743 45667799999999999999999
Q ss_pred cCceEEEEcCCccccCh----hhHHHHHhhcc----ceEEEEcChHHHHH---HHh----hcccccCCchHHH
Q 021362 225 LQHKVVIVDGNYLFLDG----GVWKDVSSMFD----EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVA 282 (313)
Q Consensus 225 ~~ar~Li~d~~~lllDE----~~~~~l~~l~~----~~i~vtHd~~~~~~---rv~----griv~~G~~~ev~ 282 (313)
.++++|++|+|+..||. .+++.|.++.+ ..|++|||++++.. |++ |++++.|+++++.
T Consensus 153 ~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 225 (239)
T cd03296 153 VEPKVLLLDEPFGALDAKVRKELRRWLRRLHDELHVTTVFVTHDQEEALEVADRVVVMNKGRIEQVGTPDEVY 225 (239)
T ss_pred cCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEecCHHHHh
Confidence 99999999999999999 45555665543 24799999998766 554 8988889887764
|
Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-37 Score=274.53 Aligned_cols=197 Identities=13% Similarity=0.058 Sum_probs=155.5
Q ss_pred cEEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCCC------
Q 021362 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPP------ 149 (313)
Q Consensus 76 ~~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~~------ 149 (313)
++|+++|+++.|++......+|+++||+|++||+++|+||||||||||+++|+|+++ |++|+|+++|++..
T Consensus 4 ~~l~~~~l~~~~~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~---~~~G~i~~~g~~i~~~~~~~ 80 (233)
T PRK11629 4 ILLQCDNLCKRYQEGSVQTDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDT---PTSGDVIFNGQPMSKLSSAA 80 (233)
T ss_pred ceEEEEeEEEEcCCCCcceeeEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCC---CCceEEEECCEEcCcCCHHH
Confidence 479999999999752111239999999999999999999999999999999999999 99999999996531
Q ss_pred ------CeEEEEecCCCCCCcccCCcccChHHHHHhcCCCCCccHHHHHHHHHHhhcC--CCccCCCCCCcCCCcchhhh
Q 021362 150 ------DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDI 221 (313)
Q Consensus 150 ------~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~~~~~LSgG~kqRv~ia~ 221 (313)
+.++|++|++..++ .+|+.+|+.+.....+.......+++.++++.++.. .+..+.+||||||||++||+
T Consensus 81 ~~~~~~~~i~~v~q~~~~~~--~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrl~la~ 158 (233)
T PRK11629 81 KAELRNQKLGFIYQFHHLLP--DFTALENVAMPLLIGKKKPAEINSRALEMLAAVGLEHRANHRPSELSGGERQRVAIAR 158 (233)
T ss_pred HHHHHhccEEEEecCcccCC--CCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHH
Confidence 35899999965433 479999998865433333233345678888888843 35567799999999999999
Q ss_pred hhccCceEEEEcCCccccCh----hhHHHHHhhcc----ceEEEEcChHHHHH--HHh----hcccccCC
Q 021362 222 LVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFD----EKWFIEVDLDTAMQ--RVL----KRHISTGK 277 (313)
Q Consensus 222 al~~~ar~Li~d~~~lllDE----~~~~~l~~l~~----~~i~vtHd~~~~~~--rv~----griv~~G~ 277 (313)
+++.++++|++|+|+..||. .+++.|+++.+ ..|++|||++++.. |++ |++++.|+
T Consensus 159 al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~sH~~~~~~~~~~~~~l~~G~i~~~~~ 228 (233)
T PRK11629 159 ALVNNPRLVLADEPTGNLDARNADSIFQLLGELNRLQGTAFLVVTHDLQLAKRMSRQLEMRDGRLTAELS 228 (233)
T ss_pred HHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhhCEEEEEECCEEEEEec
Confidence 99999999999999999999 55566666532 24799999999876 443 66665443
|
|
| >PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8e-37 Score=279.39 Aligned_cols=200 Identities=13% Similarity=0.173 Sum_probs=161.5
Q ss_pred ccEEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCC------
Q 021362 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP------ 148 (313)
Q Consensus 75 m~~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~------ 148 (313)
+++|+++|+++.|++.. +|+|+||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|.+.
T Consensus 5 ~~~l~~~~l~~~~~~~~----il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---p~~G~i~~~g~~i~~~~~~ 77 (269)
T PRK11831 5 ANLVDMRGVSFTRGNRC----IFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIA---PDHGEILFDGENIPAMSRS 77 (269)
T ss_pred cceEEEeCeEEEECCEE----EEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCceEEECCEEccccChh
Confidence 45899999999998766 9999999999999999999999999999999999999 9999999998643
Q ss_pred -----CCeEEEEecCCCCCCcccCCcccChHHHHHhc-CCCCCccHHHHHHHHHHhhcC--CCccCCCCCCcCCCcchhh
Q 021362 149 -----PDVATVLPMDGFHLYLSQLDAMEDPKEAHARR-GAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDD 220 (313)
Q Consensus 149 -----~~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~-~~~~~~~~~~~~~~l~~l~~~--~~~~~~~LSgG~kqRv~ia 220 (313)
.+.++|++|+...++ .+|+.||+.+..... +........++.++++.++.. .++++.+||||||||++||
T Consensus 78 ~~~~~~~~i~~v~q~~~~~~--~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrv~la 155 (269)
T PRK11831 78 RLYTVRKRMSMLFQSGALFT--DMNVFDNVAYPLREHTQLPAPLLHSTVMMKLEAVGLRGAAKLMPSELSGGMARRAALA 155 (269)
T ss_pred hHHHHhhcEEEEecccccCC--CCCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHH
Confidence 235899999965433 479999998764332 122222234567788888743 4567779999999999999
Q ss_pred hhhccCceEEEEcCCccccCh----hhHHHHHhhcc----ceEEEEcChHHHHH---HHh----hcccccCCchHHHH
Q 021362 221 ILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFD----EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAK 283 (313)
Q Consensus 221 ~al~~~ar~Li~d~~~lllDE----~~~~~l~~l~~----~~i~vtHd~~~~~~---rv~----griv~~G~~~ev~~ 283 (313)
++++.++++|++|+|+..||. .+++.|+++.+ ..|++|||++++.. |++ |++++.|+++++..
T Consensus 156 ral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 233 (269)
T PRK11831 156 RAIALEPDLIMFDEPFVGQDPITMGVLVKLISELNSALGVTCVVVSHDVPEVLSIADHAYIVADKKIVAHGSAQALQA 233 (269)
T ss_pred HHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhhCEEEEEECCEEEEeCCHHHHhc
Confidence 999999999999999999999 45556666543 24799999998876 554 89988998887653
|
|
| >cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-37 Score=271.76 Aligned_cols=180 Identities=16% Similarity=0.184 Sum_probs=147.4
Q ss_pred EEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCC------CCe
Q 021362 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP------PDV 151 (313)
Q Consensus 78 l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~------~~~ 151 (313)
|+++|+++.|++.. +|+|+||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|.+. .+.
T Consensus 1 l~~~~l~~~~~~~~----il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~---p~~G~i~~~g~~~~~~~~~~~~ 73 (213)
T cd03259 1 LELKGLSKTYGSVR----ALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLER---PDSGEILIDGRDVTGVPPERRN 73 (213)
T ss_pred CeeeeeEEEeCCee----eecceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC---CCCeEEEECCEEcCcCchhhcc
Confidence 46899999998765 9999999999999999999999999999999999999 9999999998653 235
Q ss_pred EEEEecCCCCCCcccCCcccChHHHHHhcCCCCCccHHHHHHHHHHhhcC--CCccCCCCCCcCCCcchhhhhhccCceE
Q 021362 152 ATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGLQHKV 229 (313)
Q Consensus 152 i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~~~~~LSgG~kqRv~ia~al~~~ar~ 229 (313)
++|++|++..+. .+|+.+|+.+.....+.......+++.++++.++.. .+.++.+||||||||++||++++.++++
T Consensus 74 i~~v~q~~~~~~--~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~la~al~~~p~~ 151 (213)
T cd03259 74 IGMVFQDYALFP--HLTVAENIAFGLKLRGVPKAEIRARVRELLELVGLEGLLNRYPHELSGGQQQRVALARALAREPSL 151 (213)
T ss_pred EEEEcCchhhcc--CCcHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHhcCCCE
Confidence 899999965433 479999998765443332223345677888888743 3566779999999999999999999999
Q ss_pred EEEcCCccccCh----hhHHHHHhhcc----ceEEEEcChHHHHH
Q 021362 230 VIVDGNYLFLDG----GVWKDVSSMFD----EKWFIEVDLDTAMQ 266 (313)
Q Consensus 230 Li~d~~~lllDE----~~~~~l~~l~~----~~i~vtHd~~~~~~ 266 (313)
|++|+|+..||. .+++.|.++.+ ..+++|||++++..
T Consensus 152 lllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~ 196 (213)
T cd03259 152 LLLDEPLSALDAKLREELREELKELQRELGITTIYVTHDQEEALA 196 (213)
T ss_pred EEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHH
Confidence 999999999999 55666666543 24799999998765
|
This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-37 Score=271.99 Aligned_cols=183 Identities=13% Similarity=0.053 Sum_probs=148.6
Q ss_pred EEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCC--------
Q 021362 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP-------- 148 (313)
Q Consensus 77 ~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~-------- 148 (313)
||+++|+++.|++.. ..+|+++||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|.+.
T Consensus 1 ~l~~~~l~~~~~~~~--~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---~~~G~i~~~g~~~~~~~~~~~ 75 (216)
T TIGR00960 1 MIRFEQVSKAYPGGH--QPALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIEK---PTRGKIRFNGQDLTRLRGREI 75 (216)
T ss_pred CeEEEEEEEEecCCC--eeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCceEEEECCEehhhcChhHH
Confidence 489999999996421 128999999999999999999999999999999999999 9999999999653
Q ss_pred ---CCeEEEEecCCCCCCcccCCcccChHHHHHhcCCCCCccHHHHHHHHHHhhc--CCCccCCCCCCcCCCcchhhhhh
Q 021362 149 ---PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDILV 223 (313)
Q Consensus 149 ---~~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~~~~~~~~~~~~l~~l~~--~~~~~~~~LSgG~kqRv~ia~al 223 (313)
.+.++|++|++..++ .+|+.||+.+.....+.......+++.++++.++. ..++++.+|||||+||++||+++
T Consensus 76 ~~~~~~i~~~~q~~~~~~--~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral 153 (216)
T TIGR00960 76 PFLRRHIGMVFQDHRLLS--DRTVYDNVAFPLRIIGVPPRDANERVSAALEKVGLEGKAHALPMQLSGGEQQRVAIARAI 153 (216)
T ss_pred HHHHHhceEEecCccccc--cccHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHH
Confidence 135899999965443 47999999887654443322344567888888884 34567779999999999999999
Q ss_pred ccCceEEEEcCCccccCh----hhHHHHHhhccc---eEEEEcChHHHHH
Q 021362 224 GLQHKVVIVDGNYLFLDG----GVWKDVSSMFDE---KWFIEVDLDTAMQ 266 (313)
Q Consensus 224 ~~~ar~Li~d~~~lllDE----~~~~~l~~l~~~---~i~vtHd~~~~~~ 266 (313)
+.++++|++|+|+..||. .+++.|.++.++ .+++|||++++..
T Consensus 154 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~~~~~ 203 (216)
T TIGR00960 154 VHKPPLLLADEPTGNLDPELSRDIMRLFEEFNRRGTTVLVATHDINLVET 203 (216)
T ss_pred hcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHH
Confidence 999999999999999999 455555555332 4799999998764
|
|
| >cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-37 Score=273.73 Aligned_cols=193 Identities=15% Similarity=0.115 Sum_probs=156.7
Q ss_pred EEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHh-----cccCCCCceeecCCCCC----
Q 021362 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRI-----NKIWPQKASSFDSQVKP---- 148 (313)
Q Consensus 78 l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~-----~~~~p~~G~i~~~g~~~---- 148 (313)
|+++||++.|++.. +|+|+||+|++||+++|+||||||||||+++|+|++ + |++|+|.++|.+.
T Consensus 1 i~~~~l~~~~~~~~----~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~---~~~G~i~~~g~~~~~~~ 73 (227)
T cd03260 1 IELRDLNVYYGDKH----ALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGA---PDEGEVLLDGKDIYDLD 73 (227)
T ss_pred CEEEEEEEEcCCce----eeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCC---CCCeEEEECCEEhhhcc
Confidence 47899999998766 999999999999999999999999999999999999 8 9999999999653
Q ss_pred ------CCeEEEEecCCCCCCcccCCcccChHHHHHhcCCCCC-ccHHHHHHHHHHhhcCC--Ccc--CCCCCCcCCCcc
Q 021362 149 ------PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWT-FNPLLLLNCLKNLRNQG--SVY--APSFDHGVGDPV 217 (313)
Q Consensus 149 ------~~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~~~-~~~~~~~~~l~~l~~~~--~~~--~~~LSgG~kqRv 217 (313)
.+.++|++|++..+ .+|+.||+.+.....+.... ...+++.++++.++... +.. +.+|||||+||+
T Consensus 74 ~~~~~~~~~i~~~~q~~~~~---~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgG~~qrv 150 (227)
T cd03260 74 VDVLELRRRVGMVFQKPNPF---PGSIYDNVAYGLRLHGIKLKEELDERVEEALRKAALWDEVKDRLHALGLSGGQQQRL 150 (227)
T ss_pred hHHHHHHhhEEEEecCchhc---cccHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCChHHhccCCcccCCHHHHHHH
Confidence 23589999996543 37999999886544432221 13456778888887432 344 479999999999
Q ss_pred hhhhhhccCceEEEEcCCccccCh----hhHHHHHhhccc--eEEEEcChHHHHH---HHh----hcccccCCchH
Q 021362 218 EDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFDE--KWFIEVDLDTAMQ---RVL----KRHISTGKPPD 280 (313)
Q Consensus 218 ~ia~al~~~ar~Li~d~~~lllDE----~~~~~l~~l~~~--~i~vtHd~~~~~~---rv~----griv~~G~~~e 280 (313)
+||++++.++++|++|+|+..||. .+++.|+++.++ .|++|||++++.. |++ |++++.|++++
T Consensus 151 ~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~ 226 (227)
T cd03260 151 CLARALANEPEVLLLDEPTSALDPISTAKIEELIAELKKEYTIVIVTHNMQQAARVADRTAFLLNGRLVEFGPTEQ 226 (227)
T ss_pred HHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhhCcEEEEEeccHHHHHHhCCEEEEEeCCEEEEecCccc
Confidence 999999999999999999999999 556666666443 5799999998876 554 88888887765
|
The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD). |
| >TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-37 Score=291.33 Aligned_cols=193 Identities=16% Similarity=0.141 Sum_probs=159.1
Q ss_pred cceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCC----CC---------
Q 021362 82 CMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQV----KP--------- 148 (313)
Q Consensus 82 ~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~----~~--------- 148 (313)
++.+.|+... +|+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|+++|. +.
T Consensus 29 ~~~~~~g~~~----~l~~vsf~i~~Gei~~I~G~nGsGKSTLlr~L~Gl~~---p~~G~I~idG~~~~~~i~~~~~~~l~ 101 (382)
T TIGR03415 29 EILDETGLVV----GVANASLDIEEGEICVLMGLSGSGKSSLLRAVNGLNP---VSRGSVLVKDGDGSIDVANCDAATLR 101 (382)
T ss_pred HHHHhhCCEE----EEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC---CCCcEEEECCEecccccccCCHHHHH
Confidence 4455565555 9999999999999999999999999999999999999 99999999984 21
Q ss_pred ---CCeEEEEecCCCCCCcccCCcccChHHHHHhcCCCCCccHHHHHHHHHHhhc--CCCccCCCCCCcCCCcchhhhhh
Q 021362 149 ---PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDILV 223 (313)
Q Consensus 149 ---~~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~~~~~~~~~~~~l~~l~~--~~~~~~~~LSgG~kqRv~ia~al 223 (313)
.+.++|+||+...++ ++|+.||+.++....+.+..+...++.++++.++. ..+.++.+||||||||++||+++
T Consensus 102 ~~r~~~i~~vfQ~~~l~p--~~Tv~eNi~~~~~~~g~~~~~~~~~a~e~le~vgL~~~~~~~~~~LSgGq~QRV~LARAL 179 (382)
T TIGR03415 102 RLRTHRVSMVFQKFALMP--WLTVEENVAFGLEMQGMPEAERRKRVDEQLELVGLAQWADKKPGELSGGMQQRVGLARAF 179 (382)
T ss_pred HHhcCCEEEEECCCcCCC--CCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHH
Confidence 136999999965443 48999999988765555544455678889999884 34667779999999999999999
Q ss_pred ccCceEEEEcCCccccCh----hhHHHHHhhcc----ceEEEEcChHHHHH---HHh----hcccccCCchHHHH
Q 021362 224 GLQHKVVIVDGNYLFLDG----GVWKDVSSMFD----EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAK 283 (313)
Q Consensus 224 ~~~ar~Li~d~~~lllDE----~~~~~l~~l~~----~~i~vtHd~~~~~~---rv~----griv~~G~~~ev~~ 283 (313)
+.++++|++|+|+..||. .+++.|.++.+ ..+|+|||++++.+ |++ |++++.|+++++..
T Consensus 180 a~~P~ILLlDEPts~LD~~~r~~l~~~L~~l~~~~~~TII~iTHdl~e~~~l~DrI~vl~~G~iv~~g~~~ei~~ 254 (382)
T TIGR03415 180 AMDADILLMDEPFSALDPLIRTQLQDELLELQAKLNKTIIFVSHDLDEALKIGNRIAIMEGGRIIQHGTPEEIVL 254 (382)
T ss_pred hcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHHHhh
Confidence 999999999999999999 45555555543 24799999999876 555 99999999988853
|
Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines. |
| >PRK10070 glycine betaine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-36 Score=291.77 Aligned_cols=202 Identities=16% Similarity=0.232 Sum_probs=162.9
Q ss_pred EEEEccceEEcccccc--------------------ccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCC
Q 021362 77 VVEARCMDEVYDALAQ--------------------RLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWP 136 (313)
Q Consensus 77 ~l~~~~l~~~y~~~~~--------------------~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p 136 (313)
+|+++||+|.||.... ...+|+|+||+|++||+++|+||||||||||+|+|+|+++ |
T Consensus 4 ~i~~~~~~k~fg~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~isl~i~~Gei~~LvG~NGsGKSTLLr~I~Gl~~---p 80 (400)
T PRK10070 4 KLEIKNLYKIFGEHPQRAFKYIEQGLSKEQILEKTGLSLGVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIE---P 80 (400)
T ss_pred EEEEeeeEEecCCChHHHHHHHhccccHHHHHhhcCCeEEEEeEEEEEcCCCEEEEECCCCchHHHHHHHHHcCCC---C
Confidence 5777777777765421 1127999999999999999999999999999999999999 9
Q ss_pred CCceeecCCCCCC------------CeEEEEecCCCCCCcccCCcccChHHHHHhcCCCCCccHHHHHHHHHHhhc--CC
Q 021362 137 QKASSFDSQVKPP------------DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN--QG 202 (313)
Q Consensus 137 ~~G~i~~~g~~~~------------~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~~~~~~~~~~~~l~~l~~--~~ 202 (313)
++|+|.++|.+.. +.++|++|+...++ ++|+.||+.+.....+.+.....+++.++++.++. ..
T Consensus 81 ~sG~I~i~G~~i~~~~~~~l~~~~~~~igyv~Q~~~l~~--~~Tv~enl~~~~~~~~~~~~~~~~~~~e~L~~~gL~~~~ 158 (400)
T PRK10070 81 TRGQVLIDGVDIAKISDAELREVRRKKIAMVFQSFALMP--HMTVLDNTAFGMELAGINAEERREKALDALRQVGLENYA 158 (400)
T ss_pred CCCEEEECCEECCcCCHHHHHHHHhCCEEEEECCCcCCC--CCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChhh
Confidence 9999999996531 35999999965443 48999999987665554433445677888998884 34
Q ss_pred CccCCCCCCcCCCcchhhhhhccCceEEEEcCCccccCh----hhHHHHHhhcc----ceEEEEcChHHHHH---HHh--
Q 021362 203 SVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFD----EKWFIEVDLDTAMQ---RVL-- 269 (313)
Q Consensus 203 ~~~~~~LSgG~kqRv~ia~al~~~ar~Li~d~~~lllDE----~~~~~l~~l~~----~~i~vtHd~~~~~~---rv~-- 269 (313)
++++.+||||||||++||+|++.++++|++|+|+..||. .+++.|.++.. ..|++|||++++.. |++
T Consensus 159 ~~~~~~LSgGq~QRv~LArAL~~~P~iLLLDEPts~LD~~~r~~l~~~L~~l~~~~g~TIIivTHd~~~~~~~~Dri~vL 238 (400)
T PRK10070 159 HSYPDELSGGMRQRVGLARALAINPDILLMDEAFSALDPLIRTEMQDELVKLQAKHQRTIVFISHDLDEAMRIGDRIAIM 238 (400)
T ss_pred hcCcccCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHCCCeEEEEECCHHHHHHhCCEEEEE
Confidence 667789999999999999999999999999999999999 45556655532 24799999999876 555
Q ss_pred --hcccccCCchHHHH
Q 021362 270 --KRHISTGKPPDVAK 283 (313)
Q Consensus 270 --griv~~G~~~ev~~ 283 (313)
|+++..|+++++..
T Consensus 239 ~~G~i~~~g~~~~l~~ 254 (400)
T PRK10070 239 QNGEVVQVGTPDEILN 254 (400)
T ss_pred ECCEEEecCCHHHHHh
Confidence 89999998888754
|
|
| >TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-37 Score=285.38 Aligned_cols=191 Identities=17% Similarity=0.212 Sum_probs=158.7
Q ss_pred EEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCC-------CCeEEEEec
Q 021362 85 EVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP-------PDVATVLPM 157 (313)
Q Consensus 85 ~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~-------~~~i~~v~q 157 (313)
|.|++.. +|+|+||+|++||++||+||||||||||+|+|+|+++ |++|+|.++|.+. .+.++|++|
T Consensus 1 k~y~~~~----~l~~vs~~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~---p~~G~i~~~g~~~~~~~~~~~~~i~~~~q 73 (302)
T TIGR01188 1 KVYGDFK----AVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLR---PTSGTARVAGYDVVREPRKVRRSIGIVPQ 73 (302)
T ss_pred CeeCCee----EEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC---CCceEEEECCEEcccCHHHHHhhcEEecC
Confidence 4676655 9999999999999999999999999999999999999 9999999999653 235899999
Q ss_pred CCCCCCcccCCcccChHHHHHhcCCCCCccHHHHHHHHHHhhc--CCCccCCCCCCcCCCcchhhhhhccCceEEEEcCC
Q 021362 158 DGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGN 235 (313)
Q Consensus 158 d~~~~~~~~ltv~e~~~~~~~~~~~~~~~~~~~~~~~l~~l~~--~~~~~~~~LSgG~kqRv~ia~al~~~ar~Li~d~~ 235 (313)
+...++ .+|+.||+.+....++.+.....+++.++++.++. ..++++.+||||||||++||+|++.++++|++|+|
T Consensus 74 ~~~~~~--~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEP 151 (302)
T TIGR01188 74 YASVDE--DLTGRENLEMMGRLYGLPKDEAEERAEELLELFELGEAADRPVGTYSGGMRRRLDIAASLIHQPDVLFLDEP 151 (302)
T ss_pred CCCCCC--CCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhCCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 965433 48999999887665554433344567888998884 34667889999999999999999999999999999
Q ss_pred ccccCh----hhHHHHHhhccc---eEEEEcChHHHHH---HHh----hcccccCCchHHHHH
Q 021362 236 YLFLDG----GVWKDVSSMFDE---KWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAKW 284 (313)
Q Consensus 236 ~lllDE----~~~~~l~~l~~~---~i~vtHd~~~~~~---rv~----griv~~G~~~ev~~~ 284 (313)
+..||. .+++.|+++.++ .+++|||++++.. |++ |+++..|+++++...
T Consensus 152 t~gLD~~~~~~l~~~l~~~~~~g~tvi~~sH~~~~~~~~~d~v~~l~~G~i~~~g~~~~l~~~ 214 (302)
T TIGR01188 152 TTGLDPRTRRAIWDYIRALKEEGVTILLTTHYMEEADKLCDRIAIIDHGRIIAEGTPEELKRR 214 (302)
T ss_pred CcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEECCHHHHHHh
Confidence 999999 566666666533 4699999999886 554 999999999887654
|
This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc. |
| >PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-36 Score=280.87 Aligned_cols=202 Identities=14% Similarity=0.116 Sum_probs=162.8
Q ss_pred EEEEccceEEccccc-cccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCCC------
Q 021362 77 VVEARCMDEVYDALA-QRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPP------ 149 (313)
Q Consensus 77 ~l~~~~l~~~y~~~~-~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~~------ 149 (313)
+|+++|+++.|++.. ....+|+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|++..
T Consensus 2 ~i~~~~l~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~~---p~~G~i~~~g~~~~~~~~~~ 78 (287)
T PRK13641 2 SIKFENVDYIYSPGTPMEKKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLK---PSSGTITIAGYHITPETGNK 78 (287)
T ss_pred EEEEEEEEEEcCCCCCccccceeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCC---CCCcEEEECCEECccccccc
Confidence 689999999997421 01239999999999999999999999999999999999999 99999999997531
Q ss_pred ------CeEEEEecCCC-CCCcccCCcccChHHHHHhcCCCCCccHHHHHHHHHHhhcC---CCccCCCCCCcCCCcchh
Q 021362 150 ------DVATVLPMDGF-HLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ---GSVYAPSFDHGVGDPVED 219 (313)
Q Consensus 150 ------~~i~~v~qd~~-~~~~~~ltv~e~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~---~~~~~~~LSgG~kqRv~i 219 (313)
..++|++|++. .++ .+|+.||+.+.....+.......+++.++++.++.. .++++.+||||||||++|
T Consensus 79 ~~~~~~~~ig~v~q~~~~~~~--~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrl~l 156 (287)
T PRK13641 79 NLKKLRKKVSLVFQFPEAQLF--ENTVLKDVEFGPKNFGFSEDEAKEKALKWLKKVGLSEDLISKSPFELSGGQMRRVAI 156 (287)
T ss_pred hHHHHHhceEEEEeChhhhhc--cchHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhHhhCCcccCCHHHHHHHHH
Confidence 25899999963 233 279999998765444333333445678888988853 366788999999999999
Q ss_pred hhhhccCceEEEEcCCccccCh----hhHHHHHhhccc---eEEEEcChHHHHH---HHh----hcccccCCchHHHH
Q 021362 220 DILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFDE---KWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAK 283 (313)
Q Consensus 220 a~al~~~ar~Li~d~~~lllDE----~~~~~l~~l~~~---~i~vtHd~~~~~~---rv~----griv~~G~~~ev~~ 283 (313)
|++++.++++|++|+|+..||. .+++.|+++.+. .+++|||++++.. |++ |++++.|+++++..
T Consensus 157 aral~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~g~tvlivsH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 234 (287)
T PRK13641 157 AGVMAYEPEILCLDEPAAGLDPEGRKEMMQLFKDYQKAGHTVILVTHNMDDVAEYADDVLVLEHGKLIKHASPKEIFS 234 (287)
T ss_pred HHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 9999999999999999999999 455666655432 4699999999876 555 89999999888754
|
|
| >PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.7e-37 Score=281.77 Aligned_cols=202 Identities=16% Similarity=0.124 Sum_probs=163.9
Q ss_pred EEEEccceEEcccccc-ccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCC-------
Q 021362 77 VVEARCMDEVYDALAQ-RLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP------- 148 (313)
Q Consensus 77 ~l~~~~l~~~y~~~~~-~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~------- 148 (313)
||+++|+++.|+.... ...+|+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|+++|.+.
T Consensus 1 mi~~~~v~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~---p~~G~i~~~g~~i~~~~~~~ 77 (288)
T PRK13643 1 MIKFEKVNYTYQPNSPFASRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQ---PTEGKVTVGDIVVSSTSKQK 77 (288)
T ss_pred CEEEEEEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCC---CCCcEEEECCEECccccccc
Confidence 5899999999974211 1238999999999999999999999999999999999999 9999999999753
Q ss_pred -----CCeEEEEecCCC-CCCcccCCcccChHHHHHhcCCCCCccHHHHHHHHHHhhcC---CCccCCCCCCcCCCcchh
Q 021362 149 -----PDVATVLPMDGF-HLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ---GSVYAPSFDHGVGDPVED 219 (313)
Q Consensus 149 -----~~~i~~v~qd~~-~~~~~~ltv~e~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~---~~~~~~~LSgG~kqRv~i 219 (313)
.+.++|++|++. .++. .|+.+|+.+.....+.+......++.++++.++.. .++.+.+||||||||++|
T Consensus 78 ~~~~~~~~ig~v~q~~~~~l~~--~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSgGqkqrvai 155 (288)
T PRK13643 78 EIKPVRKKVGVVFQFPESQLFE--ETVLKDVAFGPQNFGIPKEKAEKIAAEKLEMVGLADEFWEKSPFELSGGQMRRVAI 155 (288)
T ss_pred cHHHHHhhEEEEecCcchhccc--chHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCChhhccCCcccCCHHHHHHHHH
Confidence 135899999862 3332 59999999876655554444455678888888852 356777999999999999
Q ss_pred hhhhccCceEEEEcCCccccCh----hhHHHHHhhccc---eEEEEcChHHHHH---HHh----hcccccCCchHHHH
Q 021362 220 DILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFDE---KWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAK 283 (313)
Q Consensus 220 a~al~~~ar~Li~d~~~lllDE----~~~~~l~~l~~~---~i~vtHd~~~~~~---rv~----griv~~G~~~ev~~ 283 (313)
|++++.++++|++|+|+..||. .+++.|.++.++ ++++|||++++.. |++ |++++.|+++++..
T Consensus 156 A~aL~~~p~illLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~vtHd~~~~~~~~dri~~l~~G~i~~~g~~~~~~~ 233 (288)
T PRK13643 156 AGILAMEPEVLVLDEPTAGLDPKARIEMMQLFESIHQSGQTVVLVTHLMDDVADYADYVYLLEKGHIISCGTPSDVFQ 233 (288)
T ss_pred HHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHHHHc
Confidence 9999999999999999999999 455555555432 4799999999876 665 99999999988754
|
|
| >cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-36 Score=272.32 Aligned_cols=196 Identities=19% Similarity=0.228 Sum_probs=158.3
Q ss_pred EEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCC---------
Q 021362 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP--------- 148 (313)
Q Consensus 78 l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~--------- 148 (313)
|+++|+++.|++.. +|+++||++++|++++|+||||||||||+++|+|+++ |++|+|.++|.+.
T Consensus 1 l~~~~l~~~~~~~~----~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~---p~~G~i~~~g~~~~~~~~~~~~ 73 (232)
T cd03218 1 LRAENLSKRYGKRK----VVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVK---PDSGKILLDGQDITKLPMHKRA 73 (232)
T ss_pred CeEEEEEEEeCCEE----eeccceeEecCCcEEEEECCCCCCHHHHHHHHhCCCC---CCCcEEEECCEecccCCHhHHH
Confidence 47899999998766 9999999999999999999999999999999999999 9999999998652
Q ss_pred CCeEEEEecCCCCCCcccCCcccChHHHHHhcCCCCCccHHHHHHHHHHhhcC--CCccCCCCCCcCCCcchhhhhhccC
Q 021362 149 PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGLQ 226 (313)
Q Consensus 149 ~~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~~~~~LSgG~kqRv~ia~al~~~ 226 (313)
...++|++|++..++ .+|+.+|+.+....++........++.++++.++.. .+..+.+||||||||++||++++.+
T Consensus 74 ~~~i~~~~q~~~~~~--~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~ 151 (232)
T cd03218 74 RLGIGYLPQEASIFR--KLTVEENILAVLEIRGLSKKEREEKLEELLEEFHITHLRKSKASSLSGGERRRVEIARALATN 151 (232)
T ss_pred hccEEEecCCccccc--cCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcC
Confidence 135899999965433 489999998765443332223344667888888743 4567779999999999999999999
Q ss_pred ceEEEEcCCccccCh----hhHHHHHhhccc---eEEEEcChHHHHH---HHh----hcccccCCchHHH
Q 021362 227 HKVVIVDGNYLFLDG----GVWKDVSSMFDE---KWFIEVDLDTAMQ---RVL----KRHISTGKPPDVA 282 (313)
Q Consensus 227 ar~Li~d~~~lllDE----~~~~~l~~l~~~---~i~vtHd~~~~~~---rv~----griv~~G~~~ev~ 282 (313)
+++|++|+|+..||. .+++.|+++.+. .|++|||++.+.. |++ |+++..|+++++.
T Consensus 152 p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 221 (232)
T cd03218 152 PKFLLLDEPFAGVDPIAVQDIQKIIKILKDRGIGVLITDHNVRETLSITDRAYIIYEGKVLAEGTPEEIA 221 (232)
T ss_pred CCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEEeCHHHhh
Confidence 999999999999999 455555555432 4699999998876 554 8888888877664
|
The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium. |
| >cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-36 Score=272.20 Aligned_cols=198 Identities=18% Similarity=0.163 Sum_probs=159.3
Q ss_pred EEEccceEEccc-cccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCCC-------
Q 021362 78 VEARCMDEVYDA-LAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPP------- 149 (313)
Q Consensus 78 l~~~~l~~~y~~-~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~~------- 149 (313)
|+++|+++.|++ .. +|+|+||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|.+..
T Consensus 1 l~~~~l~~~~~~~~~----~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---~~~G~i~~~g~~~~~~~~~~~ 73 (241)
T cd03256 1 IEVENLSKTYPNGKK----ALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVE---PTSGSVLIDGTDINKLKGKAL 73 (241)
T ss_pred CEEeeEEEecCCccE----EEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcC---CCCceEEECCEeccccCHhHH
Confidence 468999999986 55 9999999999999999999999999999999999999 99999999996532
Q ss_pred ----CeEEEEecCCCCCCcccCCcccChHHHHHh--------cCCCCCccHHHHHHHHHHhhc--CCCccCCCCCCcCCC
Q 021362 150 ----DVATVLPMDGFHLYLSQLDAMEDPKEAHAR--------RGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGD 215 (313)
Q Consensus 150 ----~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~--------~~~~~~~~~~~~~~~l~~l~~--~~~~~~~~LSgG~kq 215 (313)
+.++|++|+...++ .+|+.+|+.+.... .+.......+++.++++.++. ..+.++.+|||||||
T Consensus 74 ~~~~~~i~~~~q~~~~~~--~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~q 151 (241)
T cd03256 74 RQLRRQIGMIFQQFNLIE--RLSVLENVLSGRLGRRSTWRSLFGLFPKEEKQRALAALERVGLLDKAYQRADQLSGGQQQ 151 (241)
T ss_pred HHHHhccEEEcccCcccc--cCcHHHHHHhhhcccchhhhhhcccCcHHHHHHHHHHHHHcCChhhhCCCcccCCHHHHH
Confidence 35899999965443 47999999765321 111112234567788888874 346677899999999
Q ss_pred cchhhhhhccCceEEEEcCCccccCh----hhHHHHHhhcc----ceEEEEcChHHHHH---HHh----hcccccCCchH
Q 021362 216 PVEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFD----EKWFIEVDLDTAMQ---RVL----KRHISTGKPPD 280 (313)
Q Consensus 216 Rv~ia~al~~~ar~Li~d~~~lllDE----~~~~~l~~l~~----~~i~vtHd~~~~~~---rv~----griv~~G~~~e 280 (313)
|++||++++.++++|++|+|+..||. .+++.|+++.+ ..+++|||++++.. +++ |++++.|++++
T Consensus 152 rv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~ 231 (241)
T cd03256 152 RVAIARALMQQPKLILADEPVASLDPASSRQVMDLLKRINREEGITVIVSLHQVDLAREYADRIVGLKDGRIVFDGPPAE 231 (241)
T ss_pred HHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeecCHHH
Confidence 99999999999999999999999999 55666666642 24799999999885 554 89999998888
Q ss_pred HHHH
Q 021362 281 VAKW 284 (313)
Q Consensus 281 v~~~ 284 (313)
+..+
T Consensus 232 ~~~~ 235 (241)
T cd03256 232 LTDE 235 (241)
T ss_pred hhHH
Confidence 6443
|
Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-36 Score=272.75 Aligned_cols=196 Identities=20% Similarity=0.178 Sum_probs=158.2
Q ss_pred EEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCCC--------
Q 021362 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPP-------- 149 (313)
Q Consensus 78 l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~~-------- 149 (313)
|+++|+++.|++.. +|+++||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|.+..
T Consensus 1 l~~~~l~~~~~~~~----~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~---~~~G~i~~~g~~~~~~~~~~~~ 73 (236)
T cd03219 1 LEVRGLTKRFGGLV----ALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLR---PTSGSVLFDGEDITGLPPHEIA 73 (236)
T ss_pred CeeeeeEEEECCEE----EecCceEEecCCcEEEEECCCCCCHHHHHHHHcCCCC---CCCceEEECCEECCCCCHHHHH
Confidence 46899999998765 9999999999999999999999999999999999999 99999999986532
Q ss_pred -CeEEEEecCCCCCCcccCCcccChHHHHHhcCCC----------CCccHHHHHHHHHHhhcC--CCccCCCCCCcCCCc
Q 021362 150 -DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAP----------WTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDP 216 (313)
Q Consensus 150 -~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~----------~~~~~~~~~~~l~~l~~~--~~~~~~~LSgG~kqR 216 (313)
..++|++|++..++ .+|+.||+.+.....+.. .....+++.++++.++.. .+.++.+|||||+||
T Consensus 74 ~~~i~~v~q~~~l~~--~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qr 151 (236)
T cd03219 74 RLGIGRTFQIPRLFP--ELTVLENVMVAAQARTGSGLLLARARREEREARERAEELLERVGLADLADRPAGELSYGQQRR 151 (236)
T ss_pred hcCEEEEeccccccc--CCCHHHHHHHHHhhccccccccccccccHHHHHHHHHHHHHHcCccchhhCChhhCCHHHHHH
Confidence 34899999965433 489999998865433211 112344567888888743 356777999999999
Q ss_pred chhhhhhccCceEEEEcCCccccCh----hhHHHHHhhcc---ceEEEEcChHHHHH---HHh----hcccccCCchHHH
Q 021362 217 VEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFD---EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVA 282 (313)
Q Consensus 217 v~ia~al~~~ar~Li~d~~~lllDE----~~~~~l~~l~~---~~i~vtHd~~~~~~---rv~----griv~~G~~~ev~ 282 (313)
++||++++.++++|++|+|+..||. .+++.|+++.+ ..|++|||++++.. |++ |+++..|+++++.
T Consensus 152 v~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 231 (236)
T cd03219 152 LEIARALATDPKLLLLDEPAAGLNPEETEELAELIRELRERGITVLLVEHDMDVVMSLADRVTVLDQGRVIAEGTPDEVR 231 (236)
T ss_pred HHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEeCCEEEeecCHHHhc
Confidence 9999999999999999999999999 55666666542 24799999999876 554 8888888877764
|
MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). |
| >PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-36 Score=273.38 Aligned_cols=200 Identities=17% Similarity=0.206 Sum_probs=160.6
Q ss_pred ccEEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCC------
Q 021362 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP------ 148 (313)
Q Consensus 75 m~~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~------ 148 (313)
|.+|+++|+++.|++.. +|+|+||++++|++++|+||||||||||+++|+|+++ |++|+|.++|.+.
T Consensus 1 ~~~l~~~~l~~~~~~~~----~l~~~sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~~~~~~~~ 73 (241)
T PRK10895 1 MATLTAKNLAKAYKGRR----VVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVP---RDAGNIIIDDEDISLLPLH 73 (241)
T ss_pred CceEEEeCcEEEeCCEE----EEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC---CCCcEEEECCEECCCCCHH
Confidence 45799999999998765 9999999999999999999999999999999999999 9999999999653
Q ss_pred ---CCeEEEEecCCCCCCcccCCcccChHHHHHhcC-CCCCccHHHHHHHHHHhhc--CCCccCCCCCCcCCCcchhhhh
Q 021362 149 ---PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRG-APWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDIL 222 (313)
Q Consensus 149 ---~~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~-~~~~~~~~~~~~~l~~l~~--~~~~~~~~LSgG~kqRv~ia~a 222 (313)
...++|++|++..+. .+|+.||+.+.....+ ........++.++++.++. ..+..+.+|||||+||++||++
T Consensus 74 ~~~~~~i~~~~q~~~~~~--~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~lara 151 (241)
T PRK10895 74 ARARRGIGYLPQEASIFR--RLSVYDNLMAVLQIRDDLSAEQREDRANELMEEFHIEHLRDSMGQSLSGGERRRVEIARA 151 (241)
T ss_pred HHHHhCeEEeccCCcccc--cCcHHHHHhhhhhcccccCHHHHHHHHHHHHHHcCCHHHhhcchhhCCHHHHHHHHHHHH
Confidence 235899999965443 4799999987543221 2222234567788888774 2356777999999999999999
Q ss_pred hccCceEEEEcCCccccCh----hhHHHHHhhccc---eEEEEcChHHHHH---HHh----hcccccCCchHHHH
Q 021362 223 VGLQHKVVIVDGNYLFLDG----GVWKDVSSMFDE---KWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAK 283 (313)
Q Consensus 223 l~~~ar~Li~d~~~lllDE----~~~~~l~~l~~~---~i~vtHd~~~~~~---rv~----griv~~G~~~ev~~ 283 (313)
++.++++|++|+|+..||. .+++.+.++... .+++|||++++.. +++ |++++.|+++++..
T Consensus 152 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~ 226 (241)
T PRK10895 152 LAANPKFILLDEPFAGVDPISVIDIKRIIEHLRDSGLGVLITDHNVRETLAVCERAYIVSQGHLIAHGTPTEILQ 226 (241)
T ss_pred HhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEEcCHHHHHHhcCEEEEEeCCeEEeeCCHHHHhc
Confidence 9999999999999999998 444555555432 4799999988876 544 89988998887743
|
|
| >TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-36 Score=271.99 Aligned_cols=199 Identities=17% Similarity=0.124 Sum_probs=161.3
Q ss_pred EEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCCC-------
Q 021362 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPP------- 149 (313)
Q Consensus 77 ~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~~------- 149 (313)
+|+++|+++.|++.. +|+++||+|.+|++++|+||||||||||+++|+|+++ |++|+|.++|.+..
T Consensus 1 ~l~~~~l~~~~~~~~----~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~---p~~G~i~~~g~~i~~~~~~~~ 73 (236)
T TIGR03864 1 ALEVAGLSFAYGARR----ALDDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRLYV---AQEGQISVAGHDLRRAPRAAL 73 (236)
T ss_pred CEEEEeeEEEECCEE----EEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcC---CCceEEEECCEEcccCChhhh
Confidence 488999999998765 9999999999999999999999999999999999999 99999999986532
Q ss_pred CeEEEEecCCCCCCcccCCcccChHHHHHhcCCCCCccHHHHHHHHHHhhcC--CCccCCCCCCcCCCcchhhhhhccCc
Q 021362 150 DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGLQH 227 (313)
Q Consensus 150 ~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~~~~~LSgG~kqRv~ia~al~~~a 227 (313)
+.++|++|++..++ .+|+.+|+.+.....+.......+.+.++++.++.. .+..+.+|||||+||++||++++.++
T Consensus 74 ~~i~~~~q~~~~~~--~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~laral~~~p 151 (236)
T TIGR03864 74 ARLGVVFQQPTLDL--DLSVRQNLRYHAALHGLSRAEARERIAALLARLGLAERADDKVRELNGGHRRRVEIARALLHRP 151 (236)
T ss_pred hhEEEeCCCCCCcc--cCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHhcCC
Confidence 35899999965433 489999998765443332222345677888888743 45677799999999999999999999
Q ss_pred eEEEEcCCccccCh----hhHHHHHhhcc----ceEEEEcChHHHHH--HHh----hcccccCCchHHHHH
Q 021362 228 KVVIVDGNYLFLDG----GVWKDVSSMFD----EKWFIEVDLDTAMQ--RVL----KRHISTGKPPDVAKW 284 (313)
Q Consensus 228 r~Li~d~~~lllDE----~~~~~l~~l~~----~~i~vtHd~~~~~~--rv~----griv~~G~~~ev~~~ 284 (313)
+++++|+|+..||. .+++.|+++.+ ..+++|||++++.. |++ |++++.|+++++...
T Consensus 152 ~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 222 (236)
T TIGR03864 152 ALLLLDEPTVGLDPASRAAIVAHVRALCRDQGLSVLWATHLVDEIEADDRLVVLHRGRVLADGAAAELRGA 222 (236)
T ss_pred CEEEEcCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecChhhHhhCCEEEEEeCCeEEEeCCHHHHHHH
Confidence 99999999999999 55566666542 24699999999865 544 888888888777543
|
Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification. |
| >PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-36 Score=279.37 Aligned_cols=198 Identities=17% Similarity=0.153 Sum_probs=161.3
Q ss_pred EEEEccceEEcc-ccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCCC------
Q 021362 77 VVEARCMDEVYD-ALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPP------ 149 (313)
Q Consensus 77 ~l~~~~l~~~y~-~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~~------ 149 (313)
+|+++|+++.|+ +.. +|+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.+..
T Consensus 4 ~l~~~~l~~~~~~~~~----~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---p~~G~i~~~g~~~~~~~~~~ 76 (274)
T PRK13647 4 IIEVEDLHFRYKDGTK----ALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYL---PQRGRVKVMGREVNAENEKW 76 (274)
T ss_pred eEEEEEEEEEeCCCCe----eeeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC---CCceEEEECCEECCCCCHHH
Confidence 799999999996 344 9999999999999999999999999999999999999 99999999996532
Q ss_pred --CeEEEEecCCCCCCcccCCcccChHHHHHhcCCCCCccHHHHHHHHHHhhc--CCCccCCCCCCcCCCcchhhhhhcc
Q 021362 150 --DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDILVGL 225 (313)
Q Consensus 150 --~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~~~~~~~~~~~~l~~l~~--~~~~~~~~LSgG~kqRv~ia~al~~ 225 (313)
..++|++|++..... ..|+.+|+.+.....+.......+++.++++.++. ..++++.+|||||+||++||+|++.
T Consensus 77 ~~~~i~~v~q~~~~~~~-~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgG~~qrv~laraL~~ 155 (274)
T PRK13647 77 VRSKVGLVFQDPDDQVF-SSTVWDDVAFGPVNMGLDKDEVERRVEEALKAVRMWDFRDKPPYHLSYGQKKRVAIAGVLAM 155 (274)
T ss_pred HHhhEEEEecChhhhhc-cCcHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhcCChhhCCHHHHHHHHHHHHHHc
Confidence 358999999632222 36999999876554443333334567788888874 3466777999999999999999999
Q ss_pred CceEEEEcCCccccCh----hhHHHHHhhcc---ceEEEEcChHHHHH---HHh----hcccccCCchHHH
Q 021362 226 QHKVVIVDGNYLFLDG----GVWKDVSSMFD---EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVA 282 (313)
Q Consensus 226 ~ar~Li~d~~~lllDE----~~~~~l~~l~~---~~i~vtHd~~~~~~---rv~----griv~~G~~~ev~ 282 (313)
++++|++|+|+..||. .+++.|+++.+ ..+++|||++++.+ |++ |++++.|+++++.
T Consensus 156 ~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tili~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 226 (274)
T PRK13647 156 DPDVIVLDEPMAYLDPRGQETLMEILDRLHNQGKTVIVATHDVDLAAEWADQVIVLKEGRVLAEGDKSLLT 226 (274)
T ss_pred CCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHhc
Confidence 9999999999999999 55666666643 24799999999876 554 9999999886553
|
|
| >cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-36 Score=268.57 Aligned_cols=190 Identities=14% Similarity=0.110 Sum_probs=152.7
Q ss_pred EEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCC------CCe
Q 021362 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP------PDV 151 (313)
Q Consensus 78 l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~------~~~ 151 (313)
|+++|+++.|++.. +|+|+||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|.+. ...
T Consensus 1 i~~~~l~~~~~~~~----~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~---~~~G~v~~~g~~~~~~~~~~~~ 73 (213)
T cd03301 1 VELENVTKRFGNVT----ALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEE---PTSGRIYIGGRDVTDLPPKDRD 73 (213)
T ss_pred CEEEeeEEEECCee----eeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC---CCceEEEECCEECCcCCcccce
Confidence 46899999998766 9999999999999999999999999999999999999 9999999998653 235
Q ss_pred EEEEecCCCCCCcccCCcccChHHHHHhcCCCCCccHHHHHHHHHHhhc--CCCccCCCCCCcCCCcchhhhhhccCceE
Q 021362 152 ATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDILVGLQHKV 229 (313)
Q Consensus 152 i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~~~~~~~~~~~~l~~l~~--~~~~~~~~LSgG~kqRv~ia~al~~~ar~ 229 (313)
++|++|++..+. .+|+.+|+.+.....+.......+++.++++.++. ..+.++.+||||||||++||++++.++++
T Consensus 74 i~~~~q~~~~~~--~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qr~~laral~~~p~l 151 (213)
T cd03301 74 IAMVFQNYALYP--HMTVYDNIAFGLKLRKVPKDEIDERVREVAELLQIEHLLDRKPKQLSGGQRQRVALGRAIVREPKV 151 (213)
T ss_pred EEEEecChhhcc--CCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHHHHhCChhhCCHHHHHHHHHHHHHhcCCCE
Confidence 899999965443 47999999886544333222334566778888874 34667789999999999999999999999
Q ss_pred EEEcCCccccCh----hhHHHHHhhcc----ceEEEEcChHHHHH---HHh----hcccccC
Q 021362 230 VIVDGNYLFLDG----GVWKDVSSMFD----EKWFIEVDLDTAMQ---RVL----KRHISTG 276 (313)
Q Consensus 230 Li~d~~~lllDE----~~~~~l~~l~~----~~i~vtHd~~~~~~---rv~----griv~~G 276 (313)
+++|+|+..||. .+++.|+++.+ ..+++|||++++.. +++ |++++.|
T Consensus 152 lllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~g~~~~~g 213 (213)
T cd03301 152 FLMDEPLSNLDAKLRVQMRAELKRLQQRLGTTTIYVTHDQVEAMTMADRIAVMNDGQIQQIG 213 (213)
T ss_pred EEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEECCEEEecC
Confidence 999999999999 45666666543 24799999998865 443 6655543
|
ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed. |
| >cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-36 Score=269.54 Aligned_cols=185 Identities=14% Similarity=0.089 Sum_probs=150.2
Q ss_pred EEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCC-------C
Q 021362 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP-------P 149 (313)
Q Consensus 77 ~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~-------~ 149 (313)
||+++|+++.|++......+|+++||++++|++++|+|+||||||||+++|+|+++ |++|+|.++|.+. .
T Consensus 1 ~l~~~~v~~~~~~~~~~~~il~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---~~~G~i~~~g~~~~~~~~~~~ 77 (218)
T cd03266 1 MITADALTKRFRDVKKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLE---PDAGFATVDGFDVVKEPAEAR 77 (218)
T ss_pred CeEEEEEEEecCCCCccceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcC---CCCceEEECCEEcccCHHHHH
Confidence 48899999999865111139999999999999999999999999999999999999 9999999998653 2
Q ss_pred CeEEEEecCCCCCCcccCCcccChHHHHHhcCCCCCccHHHHHHHHHHhhcC--CCccCCCCCCcCCCcchhhhhhccCc
Q 021362 150 DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGLQH 227 (313)
Q Consensus 150 ~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~~~~~LSgG~kqRv~ia~al~~~a 227 (313)
+.++|++|++..+. .+|+.||+.+....++.......+++.++++.++.. .++.+.+|||||+||++||++++.++
T Consensus 78 ~~i~~~~q~~~~~~--~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p 155 (218)
T cd03266 78 RRLGFVSDSTGLYD--RLTARENLEYFAGLYGLKGDELTARLEELADRLGMEELLDRRVGGFSTGMRQKVAIARALVHDP 155 (218)
T ss_pred hhEEEecCCcccCc--CCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHhhhhhhcCHHHHHHHHHHHHHhcCC
Confidence 45999999974433 479999998765544433333345678888888743 46677799999999999999999999
Q ss_pred eEEEEcCCccccCh----hhHHHHHhhcc---ceEEEEcChHHHHH
Q 021362 228 KVVIVDGNYLFLDG----GVWKDVSSMFD---EKWFIEVDLDTAMQ 266 (313)
Q Consensus 228 r~Li~d~~~lllDE----~~~~~l~~l~~---~~i~vtHd~~~~~~ 266 (313)
++|++|+|+..||. .+++.|+++.+ ..|++|||++++..
T Consensus 156 ~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~ 201 (218)
T cd03266 156 PVLLLDEPTTGLDVMATRALREFIRQLRALGKCILFSTHIMQEVER 201 (218)
T ss_pred CEEEEcCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHH
Confidence 99999999999999 45566665543 24799999998765
|
NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein. |
| >PRK14247 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-36 Score=272.17 Aligned_cols=200 Identities=14% Similarity=0.050 Sum_probs=161.0
Q ss_pred ccEEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCC-----CCceeecCCCCC-
Q 021362 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWP-----QKASSFDSQVKP- 148 (313)
Q Consensus 75 m~~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p-----~~G~i~~~g~~~- 148 (313)
|++|+++|+++.|++.. +|+|+||+|++|++++|+||||||||||+++|+|+++ | ++|+|.++|.+.
T Consensus 1 ~~~l~~~~l~~~~~~~~----~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~---~~~~~~~~G~i~~~g~~i~ 73 (250)
T PRK14247 1 MNKIEIRDLKVSFGQVE----VLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIE---LYPEARVSGEVYLDGQDIF 73 (250)
T ss_pred CceEEEEeeEEEECCee----eeecceeEEcCCCEEEEECCCCCCHHHHHHHHhccCC---CCCCCCCceEEEECCEECC
Confidence 56899999999998765 9999999999999999999999999999999999986 5 699999999653
Q ss_pred -------CCeEEEEecCCCCCCcccCCcccChHHHHHhcCC--CCCccHHHHHHHHHHhhcC------CCccCCCCCCcC
Q 021362 149 -------PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGA--PWTFNPLLLLNCLKNLRNQ------GSVYAPSFDHGV 213 (313)
Q Consensus 149 -------~~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~--~~~~~~~~~~~~l~~l~~~------~~~~~~~LSgG~ 213 (313)
...++|++|++..++ .+|+.||+.+.....+. ......+.+.++++.++.. .+..+.+|||||
T Consensus 74 ~~~~~~~~~~i~~v~q~~~~~~--~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~ 151 (250)
T PRK14247 74 KMDVIELRRRVQMVFQIPNPIP--NLSIFENVALGLKLNRLVKSKKELQERVRWALEKAQLWDEVKDRLDAPAGKLSGGQ 151 (250)
T ss_pred cCCHHHHhccEEEEeccCccCC--CCcHHHHHHHHHHhccccCCHHHHHHHHHHHHHHcCCCcchhhhhcCCcccCCHHH
Confidence 245899999965443 48999999876543222 1122235567888888742 356677999999
Q ss_pred CCcchhhhhhccCceEEEEcCCccccCh----hhHHHHHhhcc--ceEEEEcChHHHHH---HHh----hcccccCCchH
Q 021362 214 GDPVEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFD--EKWFIEVDLDTAMQ---RVL----KRHISTGKPPD 280 (313)
Q Consensus 214 kqRv~ia~al~~~ar~Li~d~~~lllDE----~~~~~l~~l~~--~~i~vtHd~~~~~~---rv~----griv~~G~~~e 280 (313)
+||+++|++++.++++|++|+|+..||. .+++.|+++.. ..+++|||++++.. |++ |++++.|++++
T Consensus 152 ~qrv~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~ 231 (250)
T PRK14247 152 QQRLCIARALAFQPEVLLADEPTANLDPENTAKIESLFLELKKDMTIVLVTHFPQQAARISDYVAFLYKGQIVEWGPTRE 231 (250)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCeEEEECCHHH
Confidence 9999999999999999999999999999 45555555533 24799999998865 554 89999999887
Q ss_pred HHH
Q 021362 281 VAK 283 (313)
Q Consensus 281 v~~ 283 (313)
+..
T Consensus 232 ~~~ 234 (250)
T PRK14247 232 VFT 234 (250)
T ss_pred HHc
Confidence 753
|
|
| >PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-36 Score=279.12 Aligned_cols=203 Identities=16% Similarity=0.148 Sum_probs=164.5
Q ss_pred EEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCCC-------
Q 021362 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPP------- 149 (313)
Q Consensus 77 ~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~~------- 149 (313)
+|+++|+++.|++.. ...+|+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|+++|.+..
T Consensus 4 ~l~~~~l~~~~~~~~-~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---p~~G~i~~~g~~i~~~~~~~~ 79 (279)
T PRK13650 4 IIEVKNLTFKYKEDQ-EKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLE---AESGQIIIDGDLLTEENVWDI 79 (279)
T ss_pred eEEEEeEEEEcCCCC-cCeeeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCC---CCCcEEEECCEECCcCcHHHH
Confidence 699999999997421 1238999999999999999999999999999999999999 99999999997642
Q ss_pred -CeEEEEecCCCCCCcccCCcccChHHHHHhcCCCCCccHHHHHHHHHHhhc--CCCccCCCCCCcCCCcchhhhhhccC
Q 021362 150 -DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDILVGLQ 226 (313)
Q Consensus 150 -~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~~~~~~~~~~~~l~~l~~--~~~~~~~~LSgG~kqRv~ia~al~~~ 226 (313)
+.++|++|++...+. .+|+.+|+.+.....+.......+++.++++.++. ..++.+.+|||||+||++||++++.+
T Consensus 80 ~~~i~~v~q~~~~~~~-~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qrv~lAral~~~ 158 (279)
T PRK13650 80 RHKIGMVFQNPDNQFV-GATVEDDVAFGLENKGIPHEEMKERVNEALELVGMQDFKEREPARLSGGQKQRVAIAGAVAMR 158 (279)
T ss_pred HhhceEEEcChHHhcc-cccHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHHHcC
Confidence 358999999632222 37999999887655454443445667888898884 34667789999999999999999999
Q ss_pred ceEEEEcCCccccCh----hhHHHHHhhccc----eEEEEcChHHHHH--HHh----hcccccCCchHHHHH
Q 021362 227 HKVVIVDGNYLFLDG----GVWKDVSSMFDE----KWFIEVDLDTAMQ--RVL----KRHISTGKPPDVAKW 284 (313)
Q Consensus 227 ar~Li~d~~~lllDE----~~~~~l~~l~~~----~i~vtHd~~~~~~--rv~----griv~~G~~~ev~~~ 284 (313)
+++|++|+|+..||. .+++.|+++.++ .+++|||++++.. |++ |+++..|+++++...
T Consensus 159 p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tilivtH~~~~~~~~dri~~l~~G~i~~~g~~~~~~~~ 230 (279)
T PRK13650 159 PKIIILDEATSMLDPEGRLELIKTIKGIRDDYQMTVISITHDLDEVALSDRVLVMKNGQVESTSTPRELFSR 230 (279)
T ss_pred CCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhCCEEEEEECCEEEEECCHHHHHcC
Confidence 999999999999999 556666666432 4699999999854 554 899999998887543
|
|
| >PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-36 Score=277.45 Aligned_cols=201 Identities=14% Similarity=0.110 Sum_probs=163.1
Q ss_pred ccEEEEccceEEcc-ccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCCC----
Q 021362 75 IPVVEARCMDEVYD-ALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPP---- 149 (313)
Q Consensus 75 m~~l~~~~l~~~y~-~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~~---- 149 (313)
|.+|+++|+++.|+ +.. +|+|+||+|++||+++|+|+||||||||+++|+|+++ |++|+|.++|++..
T Consensus 1 ~~~l~~~~l~~~~~~~~~----~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~---p~~G~i~~~g~~~~~~~~ 73 (277)
T PRK13652 1 MHLIETRDLCYSYSGSKE----ALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILK---PTSGSVLIRGEPITKENI 73 (277)
T ss_pred CceEEEEEEEEEeCCCCc----eeeEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC---CCceEEEECCEECCcCCH
Confidence 56899999999996 344 8999999999999999999999999999999999999 99999999997532
Q ss_pred ----CeEEEEecCCCCCCcccCCcccChHHHHHhcCCCCCccHHHHHHHHHHhhc--CCCccCCCCCCcCCCcchhhhhh
Q 021362 150 ----DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDILV 223 (313)
Q Consensus 150 ----~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~~~~~~~~~~~~l~~l~~--~~~~~~~~LSgG~kqRv~ia~al 223 (313)
..++|++|++..... ..|+.+|+.+.....+.......+++.++++.++. ..++.+.+|||||+||++||+++
T Consensus 74 ~~~~~~i~~v~q~~~~~~~-~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrl~laraL 152 (277)
T PRK13652 74 REVRKFVGLVFQNPDDQIF-SPTVEQDIAFGPINLGLDEETVAHRVSSALHMLGLEELRDRVPHHLSGGEKKRVAIAGVI 152 (277)
T ss_pred HHHHhheEEEecCcccccc-cccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhHhcCCcccCCHHHHHHHHHHHHH
Confidence 258999999632222 36999999876544333322334457788888774 34667789999999999999999
Q ss_pred ccCceEEEEcCCccccCh----hhHHHHHhhccc----eEEEEcChHHHHH---HHh----hcccccCCchHHHH
Q 021362 224 GLQHKVVIVDGNYLFLDG----GVWKDVSSMFDE----KWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAK 283 (313)
Q Consensus 224 ~~~ar~Li~d~~~lllDE----~~~~~l~~l~~~----~i~vtHd~~~~~~---rv~----griv~~G~~~ev~~ 283 (313)
+.++++|++|+|+..||. .+++.|+++..+ .+++|||++++.+ |++ |++++.|+++++..
T Consensus 153 ~~~p~llilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~ 227 (277)
T PRK13652 153 AMEPQVLVLDEPTAGLDPQGVKELIDFLNDLPETYGMTVIFSTHQLDLVPEMADYIYVMDKGRIVAYGTVEEIFL 227 (277)
T ss_pred HcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCeEEEECCHHHHhc
Confidence 999999999999999998 555666665432 4799999999876 655 99999999988854
|
|
| >TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-36 Score=272.47 Aligned_cols=197 Identities=18% Similarity=0.196 Sum_probs=158.2
Q ss_pred EEEEccceEEcc-ccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCC-------
Q 021362 77 VVEARCMDEVYD-ALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP------- 148 (313)
Q Consensus 77 ~l~~~~l~~~y~-~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~------- 148 (313)
||+++|+++.|+ +.. +|+|+||++++|++++|+||||||||||+++|+|+++ |++|+|.++|.+.
T Consensus 1 ~l~~~~l~~~~~~~~~----il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~---~~~G~i~~~g~~~~~~~~~~ 73 (243)
T TIGR02315 1 MLEVENLSKVYPNGKQ----ALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVE---PSSGSILLEGTDITKLRGKK 73 (243)
T ss_pred CeEEEeeeeecCCCcc----eeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcC---CCccEEEECCEEhhhCCHHH
Confidence 488999999997 555 9999999999999999999999999999999999999 9999999999653
Q ss_pred ----CCeEEEEecCCCCCCcccCCcccChHHHHHhc--------CCCCCccHHHHHHHHHHhhc--CCCccCCCCCCcCC
Q 021362 149 ----PDVATVLPMDGFHLYLSQLDAMEDPKEAHARR--------GAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVG 214 (313)
Q Consensus 149 ----~~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~--------~~~~~~~~~~~~~~l~~l~~--~~~~~~~~LSgG~k 214 (313)
.+.++|++|++..++ .+|+.+|+.+..... +.......+++.++++.++. ..+..+.+|||||+
T Consensus 74 ~~~~~~~i~~v~q~~~~~~--~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~ 151 (243)
T TIGR02315 74 LRKLRRRIGMIFQHYNLIE--RLTVLENVLHGRLGYKPTWRSLLGRFSEEDKERALSALERVGLADKAYQRADQLSGGQQ 151 (243)
T ss_pred HHHHHhheEEEcCCCcccc--cccHHHHHhhcccccccchhhhhccccHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHH
Confidence 234899999965443 479999997643211 11112334567788888874 34567779999999
Q ss_pred CcchhhhhhccCceEEEEcCCccccCh----hhHHHHHhhcc----ceEEEEcChHHHHH---HHh----hcccccCCch
Q 021362 215 DPVEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFD----EKWFIEVDLDTAMQ---RVL----KRHISTGKPP 279 (313)
Q Consensus 215 qRv~ia~al~~~ar~Li~d~~~lllDE----~~~~~l~~l~~----~~i~vtHd~~~~~~---rv~----griv~~G~~~ 279 (313)
||++||++++.++++|++|+|+..||. .+.+.|+++.+ ..+++|||++++.. +++ |++++.|+++
T Consensus 152 qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~ 231 (243)
T TIGR02315 152 QRVAIARALAQQPDLILADEPIASLDPKTSKQVMDYLKRINKEDGITVIINLHQVDLAKKYADRIVGLKAGEIVFDGAPS 231 (243)
T ss_pred HHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEECCEEEecCCHH
Confidence 999999999999999999999999999 45566666542 24699999999865 554 8999889887
Q ss_pred HHH
Q 021362 280 DVA 282 (313)
Q Consensus 280 ev~ 282 (313)
++.
T Consensus 232 ~~~ 234 (243)
T TIGR02315 232 ELD 234 (243)
T ss_pred HhC
Confidence 763
|
Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates. |
| >PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-36 Score=277.47 Aligned_cols=199 Identities=17% Similarity=0.134 Sum_probs=159.7
Q ss_pred EEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCCC-------
Q 021362 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPP------- 149 (313)
Q Consensus 77 ~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~~------- 149 (313)
||+++|+++.|++.. +|+++||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|.+..
T Consensus 1 ml~~~~l~~~~~~~~----il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---p~~G~i~~~g~~i~~~~~~~~ 73 (271)
T PRK13638 1 MLATSDLWFRYQDEP----VLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLR---PQKGAVLWQGKPLDYSKRGLL 73 (271)
T ss_pred CeEEEEEEEEcCCcc----cccceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCC---CCccEEEECCEEcccccCCHH
Confidence 489999999998765 9999999999999999999999999999999999999 99999999997531
Q ss_pred ---CeEEEEecCCCCCCcccCCcccChHHHHHhcCCCCCccHHHHHHHHHHhhc--CCCccCCCCCCcCCCcchhhhhhc
Q 021362 150 ---DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDILVG 224 (313)
Q Consensus 150 ---~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~~~~~~~~~~~~l~~l~~--~~~~~~~~LSgG~kqRv~ia~al~ 224 (313)
+.++|++|++..... ..++.+|+.+.....+.......+++.++++.++. ..+.++.+||||||||++||++++
T Consensus 74 ~~~~~i~~v~q~~~~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~laraL~ 152 (271)
T PRK13638 74 ALRQQVATVFQDPEQQIF-YTDIDSDIAFSLRNLGVPEAEITRRVDEALTLVDAQHFRHQPIQCLSHGQKKRVAIAGALV 152 (271)
T ss_pred HHHhheEEEeeChhhccc-cccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHhHhcCCchhCCHHHHHHHHHHHHHH
Confidence 358999998642222 25788888876544443322233456778888773 346677799999999999999999
Q ss_pred cCceEEEEcCCccccCh----hhHHHHHhhccc---eEEEEcChHHHHH---HHh----hcccccCCchHHHH
Q 021362 225 LQHKVVIVDGNYLFLDG----GVWKDVSSMFDE---KWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAK 283 (313)
Q Consensus 225 ~~ar~Li~d~~~lllDE----~~~~~l~~l~~~---~i~vtHd~~~~~~---rv~----griv~~G~~~ev~~ 283 (313)
.++++|++|+|+..||. .+++.|.++... .|++|||++++.. |++ |++++.|+++++..
T Consensus 153 ~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 225 (271)
T PRK13638 153 LQARYLLLDEPTAGLDPAGRTQMIAIIRRIVAQGNHVIISSHDIDLIYEISDAVYVLRQGQILTHGAPGEVFA 225 (271)
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 99999999999999999 455666655432 4699999999866 554 89999999887753
|
|
| >cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-36 Score=267.47 Aligned_cols=180 Identities=14% Similarity=0.131 Sum_probs=148.4
Q ss_pred EEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCC----CCeEE
Q 021362 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP----PDVAT 153 (313)
Q Consensus 78 l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~----~~~i~ 153 (313)
|+++|+++.|++.. +|+++||++++|++++|+||||||||||+++|+|+++ |++|+|.++|.+. ...++
T Consensus 1 l~~~~l~~~~~~~~----~l~~v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~~~~~~~~~i~ 73 (210)
T cd03269 1 LEVENVTKRFGRVT----ALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIIL---PDSGEVLFDGKPLDIAARNRIG 73 (210)
T ss_pred CEEEEEEEEECCEE----EEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC---CCceEEEECCCchhHHHHccEE
Confidence 46899999998665 9999999999999999999999999999999999999 9999999999764 34699
Q ss_pred EEecCCCCCCcccCCcccChHHHHHhcCCCCCccHHHHHHHHHHhhcC--CCccCCCCCCcCCCcchhhhhhccCceEEE
Q 021362 154 VLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGLQHKVVI 231 (313)
Q Consensus 154 ~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~~~~~LSgG~kqRv~ia~al~~~ar~Li 231 (313)
|++|++..+. .+|+.||+.+....++.+.....+.+.++++.++.. .+.++.+|||||+||++||++++.++++++
T Consensus 74 ~~~q~~~~~~--~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~~ll 151 (210)
T cd03269 74 YLPEERGLYP--KMKVIDQLVYLAQLKGLKKEEARRRIDEWLERLELSEYANKRVEELSKGNQQKVQFIAAVIHDPELLI 151 (210)
T ss_pred EeccCCcCCc--CCcHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCChHHHhCcHhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 9999965433 479999998765444443333445677888888743 355677999999999999999999999999
Q ss_pred EcCCccccCh----hhHHHHHhhcc---ceEEEEcChHHHHH
Q 021362 232 VDGNYLFLDG----GVWKDVSSMFD---EKWFIEVDLDTAMQ 266 (313)
Q Consensus 232 ~d~~~lllDE----~~~~~l~~l~~---~~i~vtHd~~~~~~ 266 (313)
+|+|+..||. .+++.|+++.+ ..+++|||++++..
T Consensus 152 lDEP~~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~~~~~ 193 (210)
T cd03269 152 LDEPFSGLDPVNVELLKDVIRELARAGKTVILSTHQMELVEE 193 (210)
T ss_pred EeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHH
Confidence 9999999999 45555655543 24799999998765
|
In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-36 Score=268.39 Aligned_cols=194 Identities=16% Similarity=0.141 Sum_probs=155.7
Q ss_pred EEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCC---------
Q 021362 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP--------- 148 (313)
Q Consensus 78 l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~--------- 148 (313)
|+++|+++.|++.. +|+++||++++|++++|+||||||||||+++|+|+++ |++|+|.++|.+.
T Consensus 1 l~~~~l~~~~~~~~----~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---~~~G~i~~~g~~~~~~~~~~~~ 73 (222)
T cd03224 1 LEVENLNAGYGKSQ----ILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLP---PRSGSIRFDGRDITGLPPHERA 73 (222)
T ss_pred CEEeeEEeecCCee----EeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCC---CCCceEEECCEEcCCCCHHHHH
Confidence 57899999998765 9999999999999999999999999999999999999 9999999998652
Q ss_pred CCeEEEEecCCCCCCcccCCcccChHHHHHhcCCCCCccHHHHHHHHHHhh---cCCCccCCCCCCcCCCcchhhhhhcc
Q 021362 149 PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLR---NQGSVYAPSFDHGVGDPVEDDILVGL 225 (313)
Q Consensus 149 ~~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~~~~~~~~~~~~l~~l~---~~~~~~~~~LSgG~kqRv~ia~al~~ 225 (313)
.+.++|++|++..++ .+|+.+|+.+.....+ ......++.++++.++ ...+.++.+|||||+||++||++++.
T Consensus 74 ~~~i~~~~q~~~~~~--~~t~~~~l~~~~~~~~--~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrv~laral~~ 149 (222)
T cd03224 74 RAGIGYVPEGRRIFP--ELTVEENLLLGAYARR--RAKRKARLERVYELFPRLKERRKQLAGTLSGGEQQMLAIARALMS 149 (222)
T ss_pred hcCeEEeccccccCC--CCcHHHHHHHHhhhcC--chhHHHHHHHHHHHHHhhhhhhhCchhhCCHHHHHHHHHHHHHhc
Confidence 234899999965443 4899999988654332 1223344566666663 33466777999999999999999999
Q ss_pred CceEEEEcCCccccCh----hhHHHHHhhcc---ceEEEEcChHHHHH---HHh----hcccccCCchHHH
Q 021362 226 QHKVVIVDGNYLFLDG----GVWKDVSSMFD---EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVA 282 (313)
Q Consensus 226 ~ar~Li~d~~~lllDE----~~~~~l~~l~~---~~i~vtHd~~~~~~---rv~----griv~~G~~~ev~ 282 (313)
++++|++|+|+..||. .+++.|+++.+ ..+++|||++++.. +++ |+++..|+++++.
T Consensus 150 ~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 220 (222)
T cd03224 150 RPKLLLLDEPSEGLAPKIVEEIFEAIRELRDEGVTILLVEQNARFALEIADRAYVLERGRVVLEGTAAELL 220 (222)
T ss_pred CCCEEEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhccEEEEeeCCeEEEeCCHHHHh
Confidence 9999999999999999 55666666543 24799999998876 554 8888888776653
|
The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. |
| >PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-36 Score=271.42 Aligned_cols=198 Identities=18% Similarity=0.200 Sum_probs=159.9
Q ss_pred EEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCCC-------
Q 021362 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPP------- 149 (313)
Q Consensus 77 ~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~~------- 149 (313)
||+++|+++.|++.. +|+|+||++++||+++|+||||||||||+++|+|+++ |++|+|.++|.+..
T Consensus 1 ~l~~~~l~~~~~~~~----il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~~~~~~~~~~ 73 (240)
T PRK09493 1 MIEFKNVSKHFGPTQ----VLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEE---ITSGDLIVDGLKVNDPKVDER 73 (240)
T ss_pred CEEEEeEEEEECCeE----EeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC---CCceEEEECCEECCcCChhHH
Confidence 488999999998765 9999999999999999999999999999999999998 99999999996532
Q ss_pred ---CeEEEEecCCCCCCcccCCcccChHHHHH-hcCCCCCccHHHHHHHHHHhhcC--CCccCCCCCCcCCCcchhhhhh
Q 021362 150 ---DVATVLPMDGFHLYLSQLDAMEDPKEAHA-RRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILV 223 (313)
Q Consensus 150 ---~~i~~v~qd~~~~~~~~ltv~e~~~~~~~-~~~~~~~~~~~~~~~~l~~l~~~--~~~~~~~LSgG~kqRv~ia~al 223 (313)
+.++|++|++..++ .+|+.+|+.+... ..+.......+++.++++.++.. .+.++.+||+||+||++||+++
T Consensus 74 ~~~~~i~~~~q~~~~~~--~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la~al 151 (240)
T PRK09493 74 LIRQEAGMVFQQFYLFP--HLTALENVMFGPLRVRGASKEEAEKQARELLAKVGLAERAHHYPSELSGGQQQRVAIARAL 151 (240)
T ss_pred HHhhceEEEecccccCC--CCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCChHHHhcChhhcCHHHHHHHHHHHHH
Confidence 35899999965443 4799999987542 22222223345677888888743 4567779999999999999999
Q ss_pred ccCceEEEEcCCccccCh----hhHHHHHhhcc---ceEEEEcChHHHHH---HHh----hcccccCCchHHHH
Q 021362 224 GLQHKVVIVDGNYLFLDG----GVWKDVSSMFD---EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAK 283 (313)
Q Consensus 224 ~~~ar~Li~d~~~lllDE----~~~~~l~~l~~---~~i~vtHd~~~~~~---rv~----griv~~G~~~ev~~ 283 (313)
+.+++++++|+|+..||. .+++.|.++.+ ..+++|||++++.. |++ |++++.|++.++..
T Consensus 152 ~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 225 (240)
T PRK09493 152 AVKPKLMLFDEPTSALDPELRHEVLKVMQDLAEEGMTMVIVTHEIGFAEKVASRLIFIDKGRIAEDGDPQVLIK 225 (240)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeeCCHHHHhc
Confidence 999999999999999999 44555555533 24799999999875 554 89998898877643
|
|
| >cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-36 Score=271.90 Aligned_cols=196 Identities=15% Similarity=0.159 Sum_probs=159.6
Q ss_pred EEEccceEEccc-cccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCC--------
Q 021362 78 VEARCMDEVYDA-LAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP-------- 148 (313)
Q Consensus 78 l~~~~l~~~y~~-~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~-------- 148 (313)
|+++|+++.|++ .. +|+++||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|.+.
T Consensus 1 l~~~~l~~~~~~~~~----~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~~~~~~~~~~ 73 (242)
T cd03295 1 IEFENVTKRYGGGKK----AVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIE---PTSGEIFIDGEDIREQDPVEL 73 (242)
T ss_pred CEEEEEEEEeCCcce----EeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCC---CCCceEEECCeEcCcCChHHh
Confidence 468999999987 55 9999999999999999999999999999999999999 9999999999653
Q ss_pred CCeEEEEecCCCCCCcccCCcccChHHHHHhcCCCCCccHHHHHHHHHHhhcC----CCccCCCCCCcCCCcchhhhhhc
Q 021362 149 PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ----GSVYAPSFDHGVGDPVEDDILVG 224 (313)
Q Consensus 149 ~~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~----~~~~~~~LSgG~kqRv~ia~al~ 224 (313)
...++|++|++..++ .+|+.||+.+.....+.......+++.++++.++.. .+.++.+|||||+||++||++++
T Consensus 74 ~~~i~~~~q~~~~~~--~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~LS~G~~qrv~laral~ 151 (242)
T cd03295 74 RRKIGYVIQQIGLFP--HMTVEENIALVPKLLKWPKEKIRERADELLALVGLDPAEFADRYPHELSGGQQQRVGVARALA 151 (242)
T ss_pred hcceEEEccCccccC--CCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcHHHHhcChhhCCHHHHHHHHHHHHHh
Confidence 235899999965443 489999998765444333223345678888988854 35667799999999999999999
Q ss_pred cCceEEEEcCCccccCh----hhHHHHHhhcc----ceEEEEcChHHHHH---HHh----hcccccCCchHHH
Q 021362 225 LQHKVVIVDGNYLFLDG----GVWKDVSSMFD----EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVA 282 (313)
Q Consensus 225 ~~ar~Li~d~~~lllDE----~~~~~l~~l~~----~~i~vtHd~~~~~~---rv~----griv~~G~~~ev~ 282 (313)
.++++|++|+|+..||. .+++.|+++.+ ..|++|||++++.. |++ |++++.|+++++.
T Consensus 152 ~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~g~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 224 (242)
T cd03295 152 ADPPLLLMDEPFGALDPITRDQLQEEFKRLQQELGKTIVFVTHDIDEAFRLADRIAIMKNGEIVQVGTPDEIL 224 (242)
T ss_pred cCCCEEEecCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhCCEEEEEECCEEEEecCHHHHH
Confidence 99999999999999999 45555665543 24799999998765 554 8988888877764
|
ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-36 Score=277.15 Aligned_cols=199 Identities=17% Similarity=0.145 Sum_probs=164.2
Q ss_pred EEEEccceEEcc-ccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCC-------
Q 021362 77 VVEARCMDEVYD-ALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP------- 148 (313)
Q Consensus 77 ~l~~~~l~~~y~-~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~------- 148 (313)
+|+++|+++.|+ +.. +|+++||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.+.
T Consensus 5 ~l~~~~l~~~~~~~~~----~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~~---p~~G~i~i~g~~~~~~~~~~ 77 (283)
T PRK13636 5 ILKVEELNYNYSDGTH----ALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILK---PSSGRILFDGKPIDYSRKGL 77 (283)
T ss_pred eEEEEeEEEEeCCCCe----eeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC---CCccEEEECCEECCCCcchH
Confidence 799999999996 444 9999999999999999999999999999999999999 9999999999653
Q ss_pred ---CCeEEEEecCCCCCCcccCCcccChHHHHHhcCCCCCccHHHHHHHHHHhhc--CCCccCCCCCCcCCCcchhhhhh
Q 021362 149 ---PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDILV 223 (313)
Q Consensus 149 ---~~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~~~~~~~~~~~~l~~l~~--~~~~~~~~LSgG~kqRv~ia~al 223 (313)
...++|++|++..... ..|++||+.+.....+.+.....+++.++++.++. ..+.++.+|||||+||++||+++
T Consensus 78 ~~~~~~ig~v~q~~~~~~~-~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrl~laraL 156 (283)
T PRK13636 78 MKLRESVGMVFQDPDNQLF-SASVYQDVSFGAVNLKLPEDEVRKRVDNALKRTGIEHLKDKPTHCLSFGQKKRVAIAGVL 156 (283)
T ss_pred HHHHhhEEEEecCcchhhc-cccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhhhhCCcccCCHHHHHHHHHHHHH
Confidence 1358999999632222 36999999886554454443444667888888884 34667889999999999999999
Q ss_pred ccCceEEEEcCCccccCh----hhHHHHHhhcc----ceEEEEcChHHHHH---HHh----hcccccCCchHHHH
Q 021362 224 GLQHKVVIVDGNYLFLDG----GVWKDVSSMFD----EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAK 283 (313)
Q Consensus 224 ~~~ar~Li~d~~~lllDE----~~~~~l~~l~~----~~i~vtHd~~~~~~---rv~----griv~~G~~~ev~~ 283 (313)
+.++++|++|+|+..||. .+++.|+++.+ ..+++|||++++.. |++ |++++.|+++++..
T Consensus 157 ~~~p~lLilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvsH~~~~~~~~~dri~~l~~G~i~~~g~~~~~~~ 231 (283)
T PRK13636 157 VMEPKVLVLDEPTAGLDPMGVSEIMKLLVEMQKELGLTIIIATHDIDIVPLYCDNVFVMKEGRVILQGNPKEVFA 231 (283)
T ss_pred HcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 999999999999999999 45566666643 24699999999875 555 99999999988764
|
|
| >PRK13548 hmuV hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-36 Score=272.28 Aligned_cols=198 Identities=19% Similarity=0.222 Sum_probs=160.7
Q ss_pred EEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCC--------
Q 021362 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP-------- 148 (313)
Q Consensus 77 ~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~-------- 148 (313)
||+++|+++.|++.. +|+|+||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|.+.
T Consensus 2 ~l~~~~l~~~~~~~~----il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~---p~~G~i~~~g~~~~~~~~~~~ 74 (258)
T PRK13548 2 MLEARNLSVRLGGRT----LLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELS---PDSGEVRLNGRPLADWSPAEL 74 (258)
T ss_pred eEEEEeEEEEeCCee----eeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCCEEEECCEEcccCCHHHh
Confidence 689999999998766 9999999999999999999999999999999999999 9999999999653
Q ss_pred CCeEEEEecCCCCCCcccCCcccChHHHHHhcCCCCCccHHHHHHHHHHhhc--CCCccCCCCCCcCCCcchhhhhhc--
Q 021362 149 PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDILVG-- 224 (313)
Q Consensus 149 ~~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~~~~~~~~~~~~l~~l~~--~~~~~~~~LSgG~kqRv~ia~al~-- 224 (313)
.+.++|++|++..++ .+|+.||+.+.....+........++.++++.++. ..+..+.+|||||+||++||++++
T Consensus 75 ~~~i~~~~q~~~~~~--~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGe~qrv~la~al~~~ 152 (258)
T PRK13548 75 ARRRAVLPQHSSLSF--PFTVEEVVAMGRAPHGLSRAEDDALVAAALAQVDLAHLAGRDYPQLSGGEQQRVQLARVLAQL 152 (258)
T ss_pred hhheEEEccCCcCCC--CCCHHHHHHhhhcccCCCcHHHHHHHHHHHHHcCCHhHhcCCcccCCHHHHHHHHHHHHHhcc
Confidence 235899999965433 37999999876433222222234557788888774 346678899999999999999999
Q ss_pred ----cCceEEEEcCCccccCh----hhHHHHHhhc-c---ceEEEEcChHHHHH---HHh----hcccccCCchHHHH
Q 021362 225 ----LQHKVVIVDGNYLFLDG----GVWKDVSSMF-D---EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAK 283 (313)
Q Consensus 225 ----~~ar~Li~d~~~lllDE----~~~~~l~~l~-~---~~i~vtHd~~~~~~---rv~----griv~~G~~~ev~~ 283 (313)
.++++|++|+|+..||. .+.+.|+++. + ..|++|||++++.. |++ |++++.|+++++..
T Consensus 153 ~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 230 (258)
T PRK13548 153 WEPDGPPRWLLLDEPTSALDLAHQHHVLRLARQLAHERGLAVIVVLHDLNLAARYADRIVLLHQGRLVADGTPAEVLT 230 (258)
T ss_pred cccCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhcCEEEEEECCEEEeeCCHHHHhC
Confidence 58999999999999999 4556666654 2 24799999999875 554 89998898887754
|
|
| >PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-36 Score=277.11 Aligned_cols=198 Identities=16% Similarity=0.205 Sum_probs=161.6
Q ss_pred EEEEccceEEcc-ccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCCC------
Q 021362 77 VVEARCMDEVYD-ALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPP------ 149 (313)
Q Consensus 77 ~l~~~~l~~~y~-~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~~------ 149 (313)
||+++|+++.|+ +.. +|+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|+++|.+..
T Consensus 1 ml~~~~l~~~~~~~~~----~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---p~~G~i~~~g~~~~~~~~~~ 73 (274)
T PRK13644 1 MIRLENVSYSYPDGTP----ALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLR---PQKGKVLVSGIDTGDFSKLQ 73 (274)
T ss_pred CEEEEEEEEEcCCCCc----eeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCC---CCCceEEECCEECCccccHH
Confidence 488999999995 344 9999999999999999999999999999999999999 99999999996532
Q ss_pred ---CeEEEEecCCCC-CCcccCCcccChHHHHHhcCCCCCccHHHHHHHHHHhhc--CCCccCCCCCCcCCCcchhhhhh
Q 021362 150 ---DVATVLPMDGFH-LYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDILV 223 (313)
Q Consensus 150 ---~~i~~v~qd~~~-~~~~~ltv~e~~~~~~~~~~~~~~~~~~~~~~~l~~l~~--~~~~~~~~LSgG~kqRv~ia~al 223 (313)
..++|++|++.. +. ..|+.+|+.+.....+.......+++.++++.++. ..+.++.+||+||+||++||+|+
T Consensus 74 ~~~~~i~~v~q~~~~~~~--~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral 151 (274)
T PRK13644 74 GIRKLVGIVFQNPETQFV--GRTVEEDLAFGPENLCLPPIEIRKRVDRALAEIGLEKYRHRSPKTLSGGQGQCVALAGIL 151 (274)
T ss_pred HHHhheEEEEEChhhhcc--cchHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhcCCcccCCHHHHHHHHHHHHH
Confidence 348999999642 33 37999999876554443333334567778888874 34567779999999999999999
Q ss_pred ccCceEEEEcCCccccCh----hhHHHHHhhccc---eEEEEcChHHHHH--HHh----hcccccCCchHHHH
Q 021362 224 GLQHKVVIVDGNYLFLDG----GVWKDVSSMFDE---KWFIEVDLDTAMQ--RVL----KRHISTGKPPDVAK 283 (313)
Q Consensus 224 ~~~ar~Li~d~~~lllDE----~~~~~l~~l~~~---~i~vtHd~~~~~~--rv~----griv~~G~~~ev~~ 283 (313)
+.++++|++|+|+..||. .+++.|+++.++ .+++|||++++.. |++ |++++.|+++++..
T Consensus 152 ~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~~tH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 224 (274)
T PRK13644 152 TMEPECLIFDEVTSMLDPDSGIAVLERIKKLHEKGKTIVYITHNLEELHDADRIIVMDRGKIVLEGEPENVLS 224 (274)
T ss_pred HcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHhhCCEEEEEECCEEEEECCHHHHhc
Confidence 999999999999999998 566666666442 3799999999854 554 89999999888754
|
|
| >TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-36 Score=269.18 Aligned_cols=197 Identities=15% Similarity=0.142 Sum_probs=160.0
Q ss_pred EEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCCC-------
Q 021362 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPP------- 149 (313)
Q Consensus 77 ~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~~------- 149 (313)
+|+++|+++.|++.. +|+++||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|.+..
T Consensus 2 ~i~~~~l~~~~~~~~----~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~---p~~G~i~~~g~~~~~~~~~~~ 74 (242)
T TIGR03411 2 ILYLEGLSVSFDGFK----ALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTR---PDEGSVLFGGTDLTGLPEHQI 74 (242)
T ss_pred eEEEEeeEEEcCCeE----EeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC---CCCCeEEECCeecCCCCHHHH
Confidence 699999999998765 9999999999999999999999999999999999999 99999999997532
Q ss_pred --CeEEEEecCCCCCCcccCCcccChHHHHHhcC--------CCCCccHHHHHHHHHHhhcC--CCccCCCCCCcCCCcc
Q 021362 150 --DVATVLPMDGFHLYLSQLDAMEDPKEAHARRG--------APWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPV 217 (313)
Q Consensus 150 --~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~--------~~~~~~~~~~~~~l~~l~~~--~~~~~~~LSgG~kqRv 217 (313)
..++|++|++..++ .+|+.||+.+...... ........++.++++.++.. .+..+.+|||||+||+
T Consensus 75 ~~~~i~~~~q~~~~~~--~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Ge~qrv 152 (242)
T TIGR03411 75 ARAGIGRKFQKPTVFE--NLTVFENLELALPRDKSVFASLFFRLSAEEKDRIEEVLETIGLADEADRLAGLLSHGQKQWL 152 (242)
T ss_pred HhcCeeEeccccccCC--CCCHHHHHHHhhhcccccccccccccHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHH
Confidence 24899999965443 4899999987543110 11122345678888888743 3567779999999999
Q ss_pred hhhhhhccCceEEEEcCCccccCh----hhHHHHHhhcc--ceEEEEcChHHHHH---HHh----hcccccCCchHHH
Q 021362 218 EDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFD--EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVA 282 (313)
Q Consensus 218 ~ia~al~~~ar~Li~d~~~lllDE----~~~~~l~~l~~--~~i~vtHd~~~~~~---rv~----griv~~G~~~ev~ 282 (313)
+||++++.++++|++|+|+..||. .+++.|+++.. ..|++|||++++.. |++ |++++.|+++++.
T Consensus 153 ~laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~~~~~~~~~~~~ 230 (242)
T TIGR03411 153 EIGMLLMQDPKLLLLDEPVAGMTDEETEKTAELLKSLAGKHSVVVVEHDMEFVRSIADKVTVLHQGSVLAEGSLDQVQ 230 (242)
T ss_pred HHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCeEEeeCCHHHHh
Confidence 999999999999999999999999 45555555543 34799999999876 554 8988889887764
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. |
| >PRK11248 tauB taurine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-36 Score=272.77 Aligned_cols=192 Identities=13% Similarity=0.106 Sum_probs=154.9
Q ss_pred EEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCCC---CeEE
Q 021362 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPP---DVAT 153 (313)
Q Consensus 77 ~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~~---~~i~ 153 (313)
||+++|+++.|++.. +|+|+||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|.+.. ..++
T Consensus 1 ml~~~~l~~~~~~~~----il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---p~~G~i~~~g~~~~~~~~~~~ 73 (255)
T PRK11248 1 MLQISHLYADYGGKP----ALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVP---YQHGSITLDGKPVEGPGAERG 73 (255)
T ss_pred CEEEEEEEEEeCCee----eEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCcEEEECCEECCCCCCcEE
Confidence 489999999998765 9999999999999999999999999999999999999 99999999986542 3589
Q ss_pred EEecCCCCCCcccCCcccChHHHHHhcCCCCCccHHHHHHHHHHhhcC--CCccCCCCCCcCCCcchhhhhhccCceEEE
Q 021362 154 VLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGLQHKVVI 231 (313)
Q Consensus 154 ~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~~~~~LSgG~kqRv~ia~al~~~ar~Li 231 (313)
|++|++..+. .+|+.+|+.+.....+.......+++.++++.++.. .+.++.+|||||+||++||++++.++++|+
T Consensus 74 ~v~q~~~~~~--~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrl~laral~~~p~lll 151 (255)
T PRK11248 74 VVFQNEGLLP--WRNVQDNVAFGLQLAGVEKMQRLEIAHQMLKKVGLEGAEKRYIWQLSGGQRQRVGIARALAANPQLLL 151 (255)
T ss_pred EEeCCCccCC--CCcHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCChhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 9999965433 479999998765444433333345678888888843 355677999999999999999999999999
Q ss_pred EcCCccccCh----hhHHHHHhhcc----ceEEEEcChHHHHH---HHh------hcccccCC
Q 021362 232 VDGNYLFLDG----GVWKDVSSMFD----EKWFIEVDLDTAMQ---RVL------KRHISTGK 277 (313)
Q Consensus 232 ~d~~~lllDE----~~~~~l~~l~~----~~i~vtHd~~~~~~---rv~------griv~~G~ 277 (313)
+|+|+..||. .+++.|.++.. ..|++|||++++.. |++ |++++.+.
T Consensus 152 LDEPt~~LD~~~~~~l~~~L~~~~~~~g~tviivsH~~~~~~~~~d~i~~l~~~~G~i~~~~~ 214 (255)
T PRK11248 152 LDEPFGALDAFTREQMQTLLLKLWQETGKQVLLITHDIEEAVFMATELVLLSPGPGRVVERLP 214 (255)
T ss_pred EeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCCcEEEEEec
Confidence 9999999999 55666666532 24799999998876 433 66665543
|
|
| >TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-36 Score=270.14 Aligned_cols=197 Identities=12% Similarity=0.104 Sum_probs=160.0
Q ss_pred EEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCC-----CceeecCCCCCC--
Q 021362 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQ-----KASSFDSQVKPP-- 149 (313)
Q Consensus 77 ~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~-----~G~i~~~g~~~~-- 149 (313)
+|+++|+++.|++.. +|+|+||+|++||+++|+|+||||||||+++|+|+++ |+ +|+|.++|.+..
T Consensus 1 ~l~~~~l~~~~~~~~----~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~---p~~~~~~~G~i~~~g~~~~~~ 73 (247)
T TIGR00972 1 AIEIENLNLFYGEKE----ALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMND---LVPGVRIEGKVLFDGQDIYDK 73 (247)
T ss_pred CEEEEEEEEEECCee----eecceeEEECCCCEEEEECCCCCCHHHHHHHHhccCC---CCcCCCCceEEEECCEEcccc
Confidence 488999999998765 9999999999999999999999999999999999998 98 999999986532
Q ss_pred --------CeEEEEecCCCCCCcccCCcccChHHHHHhcCC-CCCccHHHHHHHHHHhhcC------CCccCCCCCCcCC
Q 021362 150 --------DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGA-PWTFNPLLLLNCLKNLRNQ------GSVYAPSFDHGVG 214 (313)
Q Consensus 150 --------~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~-~~~~~~~~~~~~l~~l~~~------~~~~~~~LSgG~k 214 (313)
+.++|++|+... +. +|+.||+.+.....+. +.....+++.++++.++.. .+.++.+||||||
T Consensus 74 ~~~~~~~~~~i~~v~q~~~~-~~--~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~ 150 (247)
T TIGR00972 74 KIDVVELRRRVGMVFQKPNP-FP--MSIYDNIAYGPRLHGIKDKKELDEIVEESLKKAALWDEVKDRLHDSALGLSGGQQ 150 (247)
T ss_pred ccchHHHHhheEEEecCccc-CC--CCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhHhhCCcccCCHHHH
Confidence 358999999643 32 7999999886544332 2222345677788888754 3456779999999
Q ss_pred CcchhhhhhccCceEEEEcCCccccCh----hhHHHHHhhccc--eEEEEcChHHHHH---HHh----hcccccCCchHH
Q 021362 215 DPVEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFDE--KWFIEVDLDTAMQ---RVL----KRHISTGKPPDV 281 (313)
Q Consensus 215 qRv~ia~al~~~ar~Li~d~~~lllDE----~~~~~l~~l~~~--~i~vtHd~~~~~~---rv~----griv~~G~~~ev 281 (313)
||++||++++.+++++++|+|+..||. .+++.|+++.+. .+++|||++++.. |++ |+++..|+++++
T Consensus 151 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 230 (247)
T TIGR00972 151 QRLCIARALAVEPEVLLLDEPTSALDPIATGKIEELIQELKKKYTIVIVTHNMQQAARISDRTAFFYDGELVEYGPTEQI 230 (247)
T ss_pred HHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCeEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 999999999999999999999999999 455555555432 4799999998876 555 899999988877
Q ss_pred HH
Q 021362 282 AK 283 (313)
Q Consensus 282 ~~ 283 (313)
..
T Consensus 231 ~~ 232 (247)
T TIGR00972 231 FT 232 (247)
T ss_pred Hh
Confidence 43
|
This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters. |
| >cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-36 Score=265.15 Aligned_cols=179 Identities=15% Similarity=0.072 Sum_probs=146.8
Q ss_pred EEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCC-------CC
Q 021362 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP-------PD 150 (313)
Q Consensus 78 l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~-------~~ 150 (313)
|+++|+++.|++.. +|+|+||++++| +++|+||||||||||+++|+|+++ |++|+|.++|.+. .+
T Consensus 1 i~~~~~~~~~~~~~----~l~~vs~~i~~g-~~~i~G~nGsGKSTLl~~l~Gl~~---~~~G~i~~~g~~~~~~~~~~~~ 72 (211)
T cd03264 1 LQLENLTKRYGKKR----ALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTP---PSSGTIRIDGQDVLKQPQKLRR 72 (211)
T ss_pred CEEEEEEEEECCEE----EEcceeEEEcCC-cEEEECCCCCCHHHHHHHHhCCCC---CCccEEEECCCccccchHHHHh
Confidence 47899999998765 999999999999 999999999999999999999999 9999999999764 24
Q ss_pred eEEEEecCCCCCCcccCCcccChHHHHHhcCCCCCccHHHHHHHHHHhhc--CCCccCCCCCCcCCCcchhhhhhccCce
Q 021362 151 VATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDILVGLQHK 228 (313)
Q Consensus 151 ~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~~~~~~~~~~~~l~~l~~--~~~~~~~~LSgG~kqRv~ia~al~~~ar 228 (313)
.++|++|++..++ .+|+.||+.+.....+.......+.+.++++.++. ..+.++.+|||||+||++||++++.+++
T Consensus 73 ~i~~~~q~~~~~~--~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~ 150 (211)
T cd03264 73 RIGYLPQEFGVYP--NFTVREFLDYIAWLKGIPSKEVKARVDEVLELVNLGDRAKKKIGSLSGGMRRRVGIAQALVGDPS 150 (211)
T ss_pred heEEecCCCcccc--cCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCHHHHhCchhhCCHHHHHHHHHHHHHhcCCC
Confidence 5899999976443 47999999886554443333334567788888874 3456777999999999999999999999
Q ss_pred EEEEcCCccccCh----hhHHHHHhhccc--eEEEEcChHHHHH
Q 021362 229 VVIVDGNYLFLDG----GVWKDVSSMFDE--KWFIEVDLDTAMQ 266 (313)
Q Consensus 229 ~Li~d~~~lllDE----~~~~~l~~l~~~--~i~vtHd~~~~~~ 266 (313)
+|++|+|+..||. .+++.|+++.+. .+++|||++++..
T Consensus 151 llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~vsH~~~~~~~ 194 (211)
T cd03264 151 ILIVDEPTAGLDPEERIRFRNLLSELGEDRIVILSTHIVEDVES 194 (211)
T ss_pred EEEEcCCcccCCHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHH
Confidence 9999999999999 445555555322 4799999999865
|
The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-36 Score=277.25 Aligned_cols=203 Identities=12% Similarity=0.074 Sum_probs=163.5
Q ss_pred EEEEccceEEccccc-cccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCC-------
Q 021362 77 VVEARCMDEVYDALA-QRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP------- 148 (313)
Q Consensus 77 ~l~~~~l~~~y~~~~-~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~------- 148 (313)
.|+++||++.|++.. ....+|+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.+.
T Consensus 2 ~l~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~---p~~G~i~~~g~~i~~~~~~~ 78 (286)
T PRK13646 2 TIRFDNVSYTYQKGTPYEHQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLK---PTTGTVTVDDITITHKTKDK 78 (286)
T ss_pred EEEEEEEEEEECCCCccccCceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC---CCCcEEEECCEECccccccc
Confidence 489999999996421 11239999999999999999999999999999999999999 9999999999653
Q ss_pred -----CCeEEEEecCCC-CCCcccCCcccChHHHHHhcCCCCCccHHHHHHHHHHhhcC---CCccCCCCCCcCCCcchh
Q 021362 149 -----PDVATVLPMDGF-HLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ---GSVYAPSFDHGVGDPVED 219 (313)
Q Consensus 149 -----~~~i~~v~qd~~-~~~~~~ltv~e~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~---~~~~~~~LSgG~kqRv~i 219 (313)
.+.++|+||++. .++. .|+.+|+.+.....+.......+++.++++.++.. .+..+.+|||||+||++|
T Consensus 79 ~~~~~~~~ig~v~q~~~~~l~~--~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrv~l 156 (286)
T PRK13646 79 YIRPVRKRIGMVFQFPESQLFE--DTVEREIIFGPKNFKMNLDEVKNYAHRLLMDLGFSRDVMSQSPFQMSGGQMRKIAI 156 (286)
T ss_pred hHHHHHhheEEEecChHhccch--hhHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHHH
Confidence 235899999853 2332 59999998876554444333455678888888853 345777999999999999
Q ss_pred hhhhccCceEEEEcCCccccCh----hhHHHHHhhcc----ceEEEEcChHHHHH---HHh----hcccccCCchHHHHH
Q 021362 220 DILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFD----EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAKW 284 (313)
Q Consensus 220 a~al~~~ar~Li~d~~~lllDE----~~~~~l~~l~~----~~i~vtHd~~~~~~---rv~----griv~~G~~~ev~~~ 284 (313)
|++++.++++|++|+|+..||. .+++.|+++.+ ..+++|||++++.. |++ |++++.|++.++...
T Consensus 157 araL~~~p~illlDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvl~vtH~~~~~~~~~dri~~l~~G~i~~~g~~~~~~~~ 236 (286)
T PRK13646 157 VSILAMNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQTDENKTIILVSHDMNEVARYADEVIVMKEGSIVSQTSPKELFKD 236 (286)
T ss_pred HHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHHHHhC
Confidence 9999999999999999999999 55566666532 24799999999865 665 999999999887653
|
|
| >cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-36 Score=264.21 Aligned_cols=185 Identities=16% Similarity=0.112 Sum_probs=151.1
Q ss_pred EEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCCC------Ce
Q 021362 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPP------DV 151 (313)
Q Consensus 78 l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~~------~~ 151 (313)
|+++|+++.|++.. +|+++||++++|++++|+||||||||||+++|+|+++ |++|+|.++|.+.. +.
T Consensus 1 l~~~~l~~~~~~~~----~l~~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~---~~~G~i~~~g~~~~~~~~~~~~ 73 (208)
T cd03268 1 LKTNDLTKTYGKKR----VLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIK---PDSGEITFDGKSYQKNIEALRR 73 (208)
T ss_pred CEEEEEEEEECCeE----eEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcC---CCceEEEECCCcccchHHHHhh
Confidence 47899999997665 9999999999999999999999999999999999999 99999999997642 35
Q ss_pred EEEEecCCCCCCcccCCcccChHHHHHhcCCCCCccHHHHHHHHHHhhc--CCCccCCCCCCcCCCcchhhhhhccCceE
Q 021362 152 ATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDILVGLQHKV 229 (313)
Q Consensus 152 i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~~~~~~~~~~~~l~~l~~--~~~~~~~~LSgG~kqRv~ia~al~~~ar~ 229 (313)
++|++|++..++ .+|+.||+.+....++. ..+++.++++.++. ..++++.+||||||||++||++++.++++
T Consensus 74 i~~~~q~~~~~~--~~tv~e~l~~~~~~~~~----~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~l 147 (208)
T cd03268 74 IGALIEAPGFYP--NLTARENLRLLARLLGI----RKKRIDEVLDVVGLKDSAKKKVKGFSLGMKQRLGIALALLGNPDL 147 (208)
T ss_pred EEEecCCCccCc--cCcHHHHHHHHHHhcCC----cHHHHHHHHHHcCCHHHHhhhHhhCCHHHHHHHHHHHHHhcCCCE
Confidence 899999965433 48999999887544332 34567788888874 34667779999999999999999999999
Q ss_pred EEEcCCccccCh----hhHHHHHhhccc---eEEEEcChHHHHH---HHh----hccccc
Q 021362 230 VIVDGNYLFLDG----GVWKDVSSMFDE---KWFIEVDLDTAMQ---RVL----KRHIST 275 (313)
Q Consensus 230 Li~d~~~lllDE----~~~~~l~~l~~~---~i~vtHd~~~~~~---rv~----griv~~ 275 (313)
|++|+|+..||. .+++.|+++.++ .+++|||++++.. +++ |++++.
T Consensus 148 lllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~v~~l~~g~i~~~ 207 (208)
T cd03268 148 LILDEPTNGLDPDGIKELRELILSLRDQGITVLISSHLLSEIQKVADRIGIINKGKLIEE 207 (208)
T ss_pred EEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHhcCEEEEEECCEEEec
Confidence 999999999999 455555555432 4799999998865 443 665543
|
Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein. |
| >cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE) | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-36 Score=265.78 Aligned_cols=183 Identities=16% Similarity=0.123 Sum_probs=146.9
Q ss_pred EEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCC---------
Q 021362 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP--------- 148 (313)
Q Consensus 78 l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~--------- 148 (313)
|+++|+++.|++..+...+|+++||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|.+.
T Consensus 1 l~~~~l~~~~~~~~~~~~il~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~---~~~G~i~~~g~~~~~~~~~~~~ 77 (218)
T cd03255 1 IELKNLSKTYGGGGEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDR---PTSGEVRVDGTDISKLSEKELA 77 (218)
T ss_pred CeEeeeEEEecCCCcceeEEeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCcC---CCceeEEECCEehhhcchhHHH
Confidence 4689999999762101129999999999999999999999999999999999999 9999999998652
Q ss_pred ---CCeEEEEecCCCCCCcccCCcccChHHHHHhcCCCCCccHHHHHHHHHHhhcC--CCccCCCCCCcCCCcchhhhhh
Q 021362 149 ---PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILV 223 (313)
Q Consensus 149 ---~~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~~~~~LSgG~kqRv~ia~al 223 (313)
.+.++|++|++..+. .+|+.||+.+.....+.......+++.++++.++.. .++.+.+||||||||++||+++
T Consensus 78 ~~~~~~i~~~~q~~~~~~--~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al 155 (218)
T cd03255 78 AFRRRHIGFVFQSFNLLP--DLTALENVELPLLLAGVPKKERRERAEELLERVGLGDRLNHYPSELSGGQQQRVAIARAL 155 (218)
T ss_pred HHHhhcEEEEeeccccCC--CCcHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhhhcChhhcCHHHHHHHHHHHHH
Confidence 135899999965443 479999998875544432222345677888888843 3567779999999999999999
Q ss_pred ccCceEEEEcCCccccCh----hhHHHHHhhcc----ceEEEEcChHHHH
Q 021362 224 GLQHKVVIVDGNYLFLDG----GVWKDVSSMFD----EKWFIEVDLDTAM 265 (313)
Q Consensus 224 ~~~ar~Li~d~~~lllDE----~~~~~l~~l~~----~~i~vtHd~~~~~ 265 (313)
+.++++|++|+|+..||. .+++.|.++.+ ..+++|||++++.
T Consensus 156 ~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~ 205 (218)
T cd03255 156 ANDPKIILADEPTGNLDSETGKEVMELLRELNKEAGTTIVVVTHDPELAE 205 (218)
T ss_pred ccCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEECCHHHHh
Confidence 999999999999999999 55666666644 2469999999874
|
They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane. |
| >PRK14267 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.7e-36 Score=270.29 Aligned_cols=200 Identities=13% Similarity=0.050 Sum_probs=160.0
Q ss_pred ccEEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCC-----CCceeecCCCCCC
Q 021362 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWP-----QKASSFDSQVKPP 149 (313)
Q Consensus 75 m~~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p-----~~G~i~~~g~~~~ 149 (313)
+++|+++|+++.|++.. +|+|+||+|++||+++|+||||||||||+++|+|+++ | ++|+|.++|.+..
T Consensus 2 ~~~l~~~~l~~~~~~~~----~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~---~~~~~~~~G~i~~~g~~i~ 74 (253)
T PRK14267 2 KFAIETVNLRVYYGSNH----VIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLE---LNEEARVEGEVRLFGRNIY 74 (253)
T ss_pred cceEEEEeEEEEeCCee----eeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccCC---cccCCCCceEEEECCEEcc
Confidence 35799999999998765 9999999999999999999999999999999999997 7 4999999986532
Q ss_pred ----------CeEEEEecCCCCCCcccCCcccChHHHHHhcCC--CCCccHHHHHHHHHHhhcC------CCccCCCCCC
Q 021362 150 ----------DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGA--PWTFNPLLLLNCLKNLRNQ------GSVYAPSFDH 211 (313)
Q Consensus 150 ----------~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~--~~~~~~~~~~~~l~~l~~~------~~~~~~~LSg 211 (313)
..++|++|++..+. .+|+.||+.+.....+. +......++.++++.++.. .+.++.+|||
T Consensus 75 ~~~~~~~~~~~~i~~~~q~~~~~~--~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~ 152 (253)
T PRK14267 75 SPDVDPIEVRREVGMVFQYPNPFP--HLTIYDNVAIGVKLNGLVKSKKELDERVEWALKKAALWDEVKDRLNDYPSNLSG 152 (253)
T ss_pred ccccChHHHhhceeEEecCCccCC--CCcHHHHHHHHHHhcCccCCHHHHHHHHHHHHHHcCCccchhhhhccChhhCCH
Confidence 35899999965443 48999999876543332 1122234567777777632 3556779999
Q ss_pred cCCCcchhhhhhccCceEEEEcCCccccCh----hhHHHHHhhcc--ceEEEEcChHHHHH---HHh----hcccccCCc
Q 021362 212 GVGDPVEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFD--EKWFIEVDLDTAMQ---RVL----KRHISTGKP 278 (313)
Q Consensus 212 G~kqRv~ia~al~~~ar~Li~d~~~lllDE----~~~~~l~~l~~--~~i~vtHd~~~~~~---rv~----griv~~G~~ 278 (313)
||+||++||++++.++++|++|+|+..||. .+.+.|+++.+ ..|++|||++++.. |++ |++++.|++
T Consensus 153 G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~ 232 (253)
T PRK14267 153 GQRQRLVIARALAMKPKILLMDEPTANIDPVGTAKIEELLFELKKEYTIVLVTHSPAQAARVSDYVAFLYLGKLIEVGPT 232 (253)
T ss_pred HHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhhCCEEEEEECCHHHHHhhCCEEEEEECCEEEEeCCH
Confidence 999999999999999999999999999999 45555555543 24799999999865 554 899999998
Q ss_pred hHHHH
Q 021362 279 PDVAK 283 (313)
Q Consensus 279 ~ev~~ 283 (313)
+++..
T Consensus 233 ~~~~~ 237 (253)
T PRK14267 233 RKVFE 237 (253)
T ss_pred HHHHh
Confidence 87753
|
|
| >cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-36 Score=266.34 Aligned_cols=181 Identities=12% Similarity=0.072 Sum_probs=145.2
Q ss_pred EEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCC---CCeEEEE
Q 021362 79 EARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP---PDVATVL 155 (313)
Q Consensus 79 ~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~---~~~i~~v 155 (313)
+++|+++.|++.. +|+++||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|.+. .+.++|+
T Consensus 1 ~~~~l~~~~~~~~----~l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~---p~~G~i~~~g~~~~~~~~~i~~v 73 (213)
T cd03235 1 EVEDLTVSYGGHP----VLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLK---PTSGSIRVFGKPLEKERKRIGYV 73 (213)
T ss_pred CcccceeEECCEE----eeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCCC---CCCCEEEECCccHHHHHhheEEe
Confidence 3689999998765 9999999999999999999999999999999999999 9999999999753 4569999
Q ss_pred ecCCCCCCcccCCcccChHHHHHhcC----CCCCccHHHHHHHHHHhhc--CCCccCCCCCCcCCCcchhhhhhccCceE
Q 021362 156 PMDGFHLYLSQLDAMEDPKEAHARRG----APWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDILVGLQHKV 229 (313)
Q Consensus 156 ~qd~~~~~~~~ltv~e~~~~~~~~~~----~~~~~~~~~~~~~l~~l~~--~~~~~~~~LSgG~kqRv~ia~al~~~ar~ 229 (313)
+|++.......+|+.||+.+...... .......+++.++++.++. ..++++.+||||||||++||++++.++++
T Consensus 74 ~q~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~l 153 (213)
T cd03235 74 PQRRSIDRDFPISVRDVVLMGLYGHKGLFRRLSKADKAKVDEALERVGLSELADRQIGELSGGQQQRVLLARALVQDPDL 153 (213)
T ss_pred ccccccccCCCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCHHHHhCCcccCCHHHHHHHHHHHHHHcCCCE
Confidence 99965422223799999987543211 1112234567788888874 34567789999999999999999999999
Q ss_pred EEEcCCccccCh----hhHHHHHhhcc---ceEEEEcChHHHHH
Q 021362 230 VIVDGNYLFLDG----GVWKDVSSMFD---EKWFIEVDLDTAMQ 266 (313)
Q Consensus 230 Li~d~~~lllDE----~~~~~l~~l~~---~~i~vtHd~~~~~~ 266 (313)
|++|+|+..||. .+.+.|+++.+ ..|++|||++++..
T Consensus 154 lllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~sH~~~~~~~ 197 (213)
T cd03235 154 LLLDEPFAGVDPKTQEDIYELLRELRREGMTILVVTHDLGLVLE 197 (213)
T ss_pred EEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHH
Confidence 999999999999 45566665542 24799999998865
|
This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates. |
| >PRK14273 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-35 Score=269.39 Aligned_cols=198 Identities=13% Similarity=0.107 Sum_probs=159.1
Q ss_pred cEEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCC-----CCceeecCCCCC--
Q 021362 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWP-----QKASSFDSQVKP-- 148 (313)
Q Consensus 76 ~~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p-----~~G~i~~~g~~~-- 148 (313)
++|+++|+++.|++.. +|+|+||+|++||+++|+||||||||||+++|+|+++ | ++|+|.++|.+.
T Consensus 6 ~~l~~~~l~~~~~~~~----il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---~~~~~~~~G~i~~~g~~i~~ 78 (254)
T PRK14273 6 AIIETENLNLFYTDFK----ALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMND---LVEGIKIEGNVIYEGKNIYS 78 (254)
T ss_pred ceEEEeeeEEEeCCce----eecceeeEEcCCCEEEEECCCCCCHHHHHHHHhcccc---CCcCCCCceEEEECCEeccc
Confidence 4799999999998765 9999999999999999999999999999999999998 6 489999998642
Q ss_pred --------CCeEEEEecCCCCCCcccCCcccChHHHHHhcCCCC-CccHHHHHHHHHHhhc------CCCccCCCCCCcC
Q 021362 149 --------PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPW-TFNPLLLLNCLKNLRN------QGSVYAPSFDHGV 213 (313)
Q Consensus 149 --------~~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~~-~~~~~~~~~~l~~l~~------~~~~~~~~LSgG~ 213 (313)
...++|++|++..+ . +|++||+.+.....+... ....+++.++++.++. ..+.++.+|||||
T Consensus 79 ~~~~~~~~~~~i~~v~q~~~~~-~--~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgG~ 155 (254)
T PRK14273 79 NNFDILELRRKIGMVFQTPNPF-L--MSIYDNISYGPKIHGTKDKKKLDEIVEQSLKKSALWNEVKDKLNTNALSLSGGQ 155 (254)
T ss_pred ccccHHHHhhceEEEeeccccc-c--CcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCchhhHHHHhCCcccCCHHH
Confidence 23589999996543 2 799999988654333211 1223456677777653 2456777999999
Q ss_pred CCcchhhhhhccCceEEEEcCCccccCh----hhHHHHHhhccc--eEEEEcChHHHHH---HHh----hcccccCCchH
Q 021362 214 GDPVEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFDE--KWFIEVDLDTAMQ---RVL----KRHISTGKPPD 280 (313)
Q Consensus 214 kqRv~ia~al~~~ar~Li~d~~~lllDE----~~~~~l~~l~~~--~i~vtHd~~~~~~---rv~----griv~~G~~~e 280 (313)
|||++||++++.++++|++|+|+..||. .+++.|.++... .|++|||++++.. |++ |+++..|++.+
T Consensus 156 ~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~ 235 (254)
T PRK14273 156 QQRLCIARTLAIEPNVILMDEPTSALDPISTGKIEELIINLKESYTIIIVTHNMQQAGRISDRTAFFLNGCIEEESSTDE 235 (254)
T ss_pred HHHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHH
Confidence 9999999999999999999999999999 455555555432 4699999999876 554 89999999888
Q ss_pred HHH
Q 021362 281 VAK 283 (313)
Q Consensus 281 v~~ 283 (313)
+..
T Consensus 236 ~~~ 238 (254)
T PRK14273 236 LFF 238 (254)
T ss_pred HHh
Confidence 754
|
|
| >COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-37 Score=259.56 Aligned_cols=202 Identities=15% Similarity=0.192 Sum_probs=164.9
Q ss_pred EEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCCC-------
Q 021362 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPP------- 149 (313)
Q Consensus 77 ~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~~------- 149 (313)
||+++|++|.|+++. +|+++|++|++|.+++|+|||||||||||.+++.|++ .++|+|+++|.+..
T Consensus 1 MI~i~nv~K~y~~~~----vl~~isl~i~~g~iTs~IGPNGAGKSTLLS~~sRL~~---~d~G~i~i~g~~~~~~~s~~L 73 (252)
T COG4604 1 MITIENVSKSYGTKV----VLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLK---KDSGEITIDGLELTSTPSKEL 73 (252)
T ss_pred CeeehhhhHhhCCEE----eeccceeeecCCceeEEECCCCccHHHHHHHHHHhcc---ccCceEEEeeeecccCChHHH
Confidence 589999999999988 9999999999999999999999999999999999999 99999999997743
Q ss_pred -CeEEEEecCCCCCCcccCCcccChHHHHH--hcCCCCCccHHHHHHHHHHhh--cCCCccCCCCCCcCCCcchhhhhhc
Q 021362 150 -DVATVLPMDGFHLYLSQLDAMEDPKEAHA--RRGAPWTFNPLLLLNCLKNLR--NQGSVYAPSFDHGVGDPVEDDILVG 224 (313)
Q Consensus 150 -~~i~~v~qd~~~~~~~~ltv~e~~~~~~~--~~~~~~~~~~~~~~~~l~~l~--~~~~~~~~~LSgG~kqRv~ia~al~ 224 (313)
+.++++-|+.... ..+||+|-+.|+.. .+|.+.++++..+.++++.+. ...+++..+||||||||..||+.++
T Consensus 74 Ak~lSILkQ~N~i~--~rlTV~dLv~FGRfPYSqGRlt~eD~~~I~~aieyl~L~~l~dryLd~LSGGQrQRAfIAMVla 151 (252)
T COG4604 74 AKKLSILKQENHIN--SRLTVRDLVGFGRFPYSQGRLTKEDRRIINEAIEYLHLEDLSDRYLDELSGGQRQRAFIAMVLA 151 (252)
T ss_pred HHHHHHHHhhchhh--heeEHHHHhhcCCCcccCCCCchHHHHHHHHHHHHhcccchHHHhHHhcccchhhhhhhheeee
Confidence 3467788875433 35899999988754 346667888899999999988 4567889999999999999966666
Q ss_pred cCceEEEEcCCccccCh----hhHHHHHhhccc----eEEEEcChHHHHH---HHh----hcccccCCchHHHHHHHH
Q 021362 225 LQHKVVIVDGNYLFLDG----GVWKDVSSMFDE----KWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAKWRIE 287 (313)
Q Consensus 225 ~~ar~Li~d~~~lllDE----~~~~~l~~l~~~----~i~vtHd~~~~~~---rv~----griv~~G~~~ev~~~~~~ 287 (313)
.+...+++|+|+.-||- .+++.++.+.++ +++|-||+++|.. .++ |+++..|+|+|++.....
T Consensus 152 QdTdyvlLDEPLNNLDmkHsv~iMk~Lrrla~el~KtiviVlHDINfAS~YsD~IVAlK~G~vv~~G~~~eii~~~~L 229 (252)
T COG4604 152 QDTDYVLLDEPLNNLDMKHSVQIMKILRRLADELGKTIVVVLHDINFASCYSDHIVALKNGKVVKQGSPDEIIQPEIL 229 (252)
T ss_pred ccCcEEEecCcccccchHHHHHHHHHHHHHHHHhCCeEEEEEecccHHHhhhhheeeecCCEEEecCCHHHhcCHHHH
Confidence 66666666666666665 455555555443 5799999999988 555 999999999999766543
|
|
| >TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-36 Score=265.88 Aligned_cols=185 Identities=14% Similarity=0.063 Sum_probs=147.3
Q ss_pred EEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCCC-------
Q 021362 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPP------- 149 (313)
Q Consensus 77 ~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~~------- 149 (313)
+|+++|+++.|++..+...+|+++||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|.+..
T Consensus 1 ~l~~~~v~~~~~~~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~---~~~G~i~~~g~~~~~~~~~~~ 77 (221)
T TIGR02211 1 LLKCENLGKRYQEGKLDTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDN---PTSGEVLFNGQSLSKLSSNER 77 (221)
T ss_pred CEEEEeeeEEccCCCcceEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC---CCCcEEEECCEEhhhcCHhHH
Confidence 37899999999752111239999999999999999999999999999999999999 99999999986531
Q ss_pred -----CeEEEEecCCCCCCcccCCcccChHHHHHhcCCCCCccHHHHHHHHHHhhcC--CCccCCCCCCcCCCcchhhhh
Q 021362 150 -----DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDIL 222 (313)
Q Consensus 150 -----~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~~~~~LSgG~kqRv~ia~a 222 (313)
+.++|++|++..+. .+|+.||+.+.............+++.++++.++.. .++.+.+|||||+||++||++
T Consensus 78 ~~~~~~~i~~v~q~~~~~~--~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~lara 155 (221)
T TIGR02211 78 AKLRNKKLGFIYQFHHLLP--DFTALENVAMPLLIGKKSVKEAKERAYEMLEKVGLEHRINHRPSELSGGERQRVAIARA 155 (221)
T ss_pred HHHHHhcEEEEecccccCC--CCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHH
Confidence 35899999965433 479999998765433322222345677888888743 456677999999999999999
Q ss_pred hccCceEEEEcCCccccCh----hhHHHHHhhcc----ceEEEEcChHHHHH
Q 021362 223 VGLQHKVVIVDGNYLFLDG----GVWKDVSSMFD----EKWFIEVDLDTAMQ 266 (313)
Q Consensus 223 l~~~ar~Li~d~~~lllDE----~~~~~l~~l~~----~~i~vtHd~~~~~~ 266 (313)
++.++++|++|+|+..||. .+++.|+++.+ ..+++|||++++..
T Consensus 156 l~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~~~~~ 207 (221)
T TIGR02211 156 LVNQPSLVLADEPTGNLDNNNAKIIFDLMLELNRELNTSFLVVTHDLELAKK 207 (221)
T ss_pred HhCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHhh
Confidence 9999999999999999999 55566665543 24799999998754
|
This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina. |
| >PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.8e-36 Score=278.60 Aligned_cols=203 Identities=14% Similarity=0.124 Sum_probs=162.1
Q ss_pred cEEEEccceEEccccc-cccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCC------
Q 021362 76 PVVEARCMDEVYDALA-QRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP------ 148 (313)
Q Consensus 76 ~~l~~~~l~~~y~~~~-~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~------ 148 (313)
++|+++|+++.|++.. ....+|+|+||+|++|++++|+|+||||||||+++|+|+++ |++|+|+++|.+.
T Consensus 20 ~~l~~~nl~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~---p~~G~I~i~g~~~~~~~~~ 96 (320)
T PRK13631 20 IILRVKNLYCVFDEKQENELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIK---SKYGTIQVGDIYIGDKKNN 96 (320)
T ss_pred ceEEEEeEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCCeEEECCEEccccccc
Confidence 4799999999997421 11239999999999999999999999999999999999999 9999999998442
Q ss_pred ------------------CCeEEEEecCCC-CCCcccCCcccChHHHHHhcCCCCCccHHHHHHHHHHhhcC---CCccC
Q 021362 149 ------------------PDVATVLPMDGF-HLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ---GSVYA 206 (313)
Q Consensus 149 ------------------~~~i~~v~qd~~-~~~~~~ltv~e~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~---~~~~~ 206 (313)
.+.++|++|++. .++. .|+.||+.++....+.+......++.++++.++.. .+..+
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~--~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~ 174 (320)
T PRK13631 97 HELITNPYSKKIKNFKELRRRVSMVFQFPEYQLFK--DTIEKDIMFGPVALGVKKSEAKKLAKFYLNKMGLDDSYLERSP 174 (320)
T ss_pred ccccccccccccchHHHHHhcEEEEEECchhcccc--chHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCChhHhcCCc
Confidence 234899999863 3333 59999998865444433333445677888888853 45677
Q ss_pred CCCCCcCCCcchhhhhhccCceEEEEcCCccccCh----hhHHHHHhhcc---ceEEEEcChHHHHH---HHh----hcc
Q 021362 207 PSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFD---EKWFIEVDLDTAMQ---RVL----KRH 272 (313)
Q Consensus 207 ~~LSgG~kqRv~ia~al~~~ar~Li~d~~~lllDE----~~~~~l~~l~~---~~i~vtHd~~~~~~---rv~----gri 272 (313)
.+||||||||++||++++.++++|++|+|+..||. .+++.|.++.+ ..+++|||++++.. |++ |++
T Consensus 175 ~~LSgGqkqRvaiAraL~~~p~iLLLDEPtsgLD~~~~~~l~~~L~~l~~~g~TiiivtHd~~~~~~~adri~vl~~G~i 254 (320)
T PRK13631 175 FGLSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLILDAKANNKTVFVITHTMEHVLEVADEVIVMDKGKI 254 (320)
T ss_pred ccCCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEE
Confidence 79999999999999999999999999999999999 45555555533 24799999998765 555 999
Q ss_pred cccCCchHHHH
Q 021362 273 ISTGKPPDVAK 283 (313)
Q Consensus 273 v~~G~~~ev~~ 283 (313)
++.|+++++..
T Consensus 255 ~~~g~~~~~~~ 265 (320)
T PRK13631 255 LKTGTPYEIFT 265 (320)
T ss_pred EEeCCHHHHhc
Confidence 99999987743
|
|
| >PRK14268 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-35 Score=270.19 Aligned_cols=198 Identities=13% Similarity=0.082 Sum_probs=159.4
Q ss_pred ccEEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCC-----CCceeecCCCCC-
Q 021362 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWP-----QKASSFDSQVKP- 148 (313)
Q Consensus 75 m~~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p-----~~G~i~~~g~~~- 148 (313)
+++|+++|+++.|++.. +|+|+||+|++|++++|+|+||||||||+++|+|+++ | ++|+|.++|.+.
T Consensus 10 ~~~l~~~~l~~~~~~~~----il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~---~~~~~~~~G~i~~~g~~i~ 82 (258)
T PRK14268 10 QPQIKVENLNLWYGEKQ----ALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMND---LIKNCRIEGKVSIEGEDIY 82 (258)
T ss_pred ceeEEEeeeEEEeCCee----eeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC---cccCCCcceEEEECCEEcc
Confidence 56899999999998765 9999999999999999999999999999999999986 5 799999998652
Q ss_pred ---------CCeEEEEecCCCCCCcccCCcccChHHHHHhcCCCCCccHHHHHHHHHHhhcC------CCccCCCCCCcC
Q 021362 149 ---------PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ------GSVYAPSFDHGV 213 (313)
Q Consensus 149 ---------~~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~------~~~~~~~LSgG~ 213 (313)
.+.++|++|++.. +. +|+.||+.+.....+.......+++.++++.++.. .+..+.+|||||
T Consensus 83 ~~~~~~~~~~~~i~~v~q~~~~-~~--~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~ 159 (258)
T PRK14268 83 EPDVDVVELRKNVGMVFQKPNP-FP--MSIYDNVAYGPRIHGANKKDLDGVVENALRSAALWDETSDRLKSPALSLSGGQ 159 (258)
T ss_pred cccchHHHHhhhEEEEecCCcc-Cc--ccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcchhhhhcCChhhCCHHH
Confidence 2358999998643 32 69999998765444432222234567778877642 355677999999
Q ss_pred CCcchhhhhhccCceEEEEcCCccccCh----hhHHHHHhhcc--ceEEEEcChHHHHH---HHh----hcccccCCchH
Q 021362 214 GDPVEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFD--EKWFIEVDLDTAMQ---RVL----KRHISTGKPPD 280 (313)
Q Consensus 214 kqRv~ia~al~~~ar~Li~d~~~lllDE----~~~~~l~~l~~--~~i~vtHd~~~~~~---rv~----griv~~G~~~e 280 (313)
+||++||++++.++++|++|+|+..||. .+++.|+++.+ ..+++|||++++.. |++ |++++.|++++
T Consensus 160 ~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~ 239 (258)
T PRK14268 160 QQRLCIARTLAVKPKIILFDEPTSALDPISTARIEDLIMNLKKDYTIVIVTHNMQQAARISDYTGFFLMGELIEFGQTRQ 239 (258)
T ss_pred HHHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhhCCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHH
Confidence 9999999999999999999999999999 45555555533 24699999999876 554 89999999887
Q ss_pred HH
Q 021362 281 VA 282 (313)
Q Consensus 281 v~ 282 (313)
+.
T Consensus 240 ~~ 241 (258)
T PRK14268 240 IF 241 (258)
T ss_pred Hh
Confidence 74
|
|
| >PRK10908 cell division protein FtsE; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-36 Score=266.34 Aligned_cols=181 Identities=14% Similarity=0.090 Sum_probs=147.8
Q ss_pred EEEEccceEEc-cccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCC-------
Q 021362 77 VVEARCMDEVY-DALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP------- 148 (313)
Q Consensus 77 ~l~~~~l~~~y-~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~------- 148 (313)
||+++|+++.| ++.. +|+|+||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|.+.
T Consensus 1 ~l~~~~l~~~~~~~~~----~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~i~~~~~~~ 73 (222)
T PRK10908 1 MIRFEHVSKAYLGGRQ----ALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIER---PSAGKIWFSGHDITRLKNRE 73 (222)
T ss_pred CEEEEeeEEEecCCCe----EEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCceEEEECCEEcccCChhH
Confidence 48899999999 5544 9999999999999999999999999999999999999 9999999998643
Q ss_pred ----CCeEEEEecCCCCCCcccCCcccChHHHHHhcCCCCCccHHHHHHHHHHhhc--CCCccCCCCCCcCCCcchhhhh
Q 021362 149 ----PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDIL 222 (313)
Q Consensus 149 ----~~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~~~~~~~~~~~~l~~l~~--~~~~~~~~LSgG~kqRv~ia~a 222 (313)
.+.++|++|++..++ .+|+.||+.+.....+.......+++.++++.++. ..++.+.+||+||+||++||++
T Consensus 74 ~~~~~~~i~~~~q~~~~~~--~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~lara 151 (222)
T PRK10908 74 VPFLRRQIGMIFQDHHLLM--DRTVYDNVAIPLIIAGASGDDIRRRVSAALDKVGLLDKAKNFPIQLSGGEQQRVGIARA 151 (222)
T ss_pred HHHHHhheEEEecCccccc--cccHHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCCchhCCHHHHHHHHHHHH
Confidence 235899999965434 37999999886544443322334456778888874 3456777999999999999999
Q ss_pred hccCceEEEEcCCccccCh----hhHHHHHhhccc---eEEEEcChHHHHH
Q 021362 223 VGLQHKVVIVDGNYLFLDG----GVWKDVSSMFDE---KWFIEVDLDTAMQ 266 (313)
Q Consensus 223 l~~~ar~Li~d~~~lllDE----~~~~~l~~l~~~---~i~vtHd~~~~~~ 266 (313)
++.++++|++|+|+..||. .+++.|.++.++ .+++|||++++..
T Consensus 152 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~ 202 (222)
T PRK10908 152 VVNKPAVLLADEPTGNLDDALSEGILRLFEEFNRVGVTVLMATHDIGLISR 202 (222)
T ss_pred HHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHH
Confidence 9999999999999999999 455666665432 4799999999876
|
|
| >TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-36 Score=267.05 Aligned_cols=195 Identities=12% Similarity=0.069 Sum_probs=157.2
Q ss_pred EEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCC---------
Q 021362 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP--------- 148 (313)
Q Consensus 78 l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~--------- 148 (313)
|+++||++.|++.. +|+|+||++++||+++|+||||||||||+++|+|+++ |++|+|.++|.+.
T Consensus 1 l~~~~l~~~~~~~~----~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~~~~~~~~~~~ 73 (230)
T TIGR03410 1 LEVSNLNVYYGQSH----ILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLP---VKSGSIRLDGEDITKLPPHERA 73 (230)
T ss_pred CEEEeEEEEeCCeE----EecceeeEECCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCCEEEECCEECCCCCHHHHH
Confidence 46899999998766 9999999999999999999999999999999999999 9999999998652
Q ss_pred CCeEEEEecCCCCCCcccCCcccChHHHHHhcCCCCCccHHHHHHHHHHhh---cCCCccCCCCCCcCCCcchhhhhhcc
Q 021362 149 PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLR---NQGSVYAPSFDHGVGDPVEDDILVGL 225 (313)
Q Consensus 149 ~~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~~~~~~~~~~~~l~~l~---~~~~~~~~~LSgG~kqRv~ia~al~~ 225 (313)
.+.++|++|++..++ .+|+.+|+.+....++.. ..+...++++.++ ...+.++.+|||||+||++||++++.
T Consensus 74 ~~~i~~~~q~~~~~~--~~tv~~~l~~~~~~~~~~---~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~ 148 (230)
T TIGR03410 74 RAGIAYVPQGREIFP--RLTVEENLLTGLAALPRR---SRKIPDEIYELFPVLKEMLGRRGGDLSGGQQQQLAIARALVT 148 (230)
T ss_pred HhCeEEeccCCcccC--CCcHHHHHHHHHHhcCcc---hHHHHHHHHHHHHhHHHHhhCChhhCCHHHHHHHHHHHHHhc
Confidence 235899999965433 479999998765433211 2233455666554 34567788999999999999999999
Q ss_pred CceEEEEcCCccccCh----hhHHHHHhhcc----ceEEEEcChHHHHH---HHh----hcccccCCchHHHHH
Q 021362 226 QHKVVIVDGNYLFLDG----GVWKDVSSMFD----EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAKW 284 (313)
Q Consensus 226 ~ar~Li~d~~~lllDE----~~~~~l~~l~~----~~i~vtHd~~~~~~---rv~----griv~~G~~~ev~~~ 284 (313)
+++++++|+|+..||. .+++.|.++.+ ..+++|||++++.. |++ |++++.|+++++..+
T Consensus 149 ~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~g~i~~~~~~~~~~~~ 222 (230)
T TIGR03410 149 RPKLLLLDEPTEGIQPSIIKDIGRVIRRLRAEGGMAILLVEQYLDFARELADRYYVMERGRVVASGAGDELDED 222 (230)
T ss_pred CCCEEEecCCcccCCHHHHHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHcChH
Confidence 9999999999999999 55556665543 24699999999876 555 899999988887444
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. |
| >cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-36 Score=274.29 Aligned_cols=196 Identities=17% Similarity=0.198 Sum_probs=159.9
Q ss_pred EEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCC----------
Q 021362 79 EARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP---------- 148 (313)
Q Consensus 79 ~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~---------- 148 (313)
.++|+++.|++.. +|+|+||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|.+.
T Consensus 26 ~~~~~~~~~~~~~----il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~---p~~G~i~i~g~~~~~~~~~~~~~ 98 (269)
T cd03294 26 SKEEILKKTGQTV----GVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIE---PTSGKVLIDGQDIAAMSRKELRE 98 (269)
T ss_pred hhhhhhhhcCCce----EeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC---CCCeEEEECCEEccccChhhhhh
Confidence 5679999999877 9999999999999999999999999999999999999 9999999998642
Q ss_pred --CCeEEEEecCCCCCCcccCCcccChHHHHHhcCCCCCccHHHHHHHHHHhhcC--CCccCCCCCCcCCCcchhhhhhc
Q 021362 149 --PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVG 224 (313)
Q Consensus 149 --~~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~~~~~LSgG~kqRv~ia~al~ 224 (313)
.+.++|++|++..++ .+|+.+|+.+.....+.......+++.++++.++.. .+..+.+|||||+||++||++++
T Consensus 99 ~~~~~i~~v~q~~~~~~--~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~lAral~ 176 (269)
T cd03294 99 LRRKKISMVFQSFALLP--HRTVLENVAFGLEVQGVPRAEREERAAEALELVGLEGWEHKYPDELSGGMQQRVGLARALA 176 (269)
T ss_pred hhcCcEEEEecCcccCC--CCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCCcccCCHHHHHHHHHHHHHh
Confidence 235899999965443 489999998875443332223345677888888743 46677899999999999999999
Q ss_pred cCceEEEEcCCccccCh----hhHHHHHhhcc----ceEEEEcChHHHHH---HHh----hcccccCCchHHHH
Q 021362 225 LQHKVVIVDGNYLFLDG----GVWKDVSSMFD----EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAK 283 (313)
Q Consensus 225 ~~ar~Li~d~~~lllDE----~~~~~l~~l~~----~~i~vtHd~~~~~~---rv~----griv~~G~~~ev~~ 283 (313)
.++++|++|+|+..||. .+++.|.++.+ ..+++|||++++.. +++ |++++.|+++++..
T Consensus 177 ~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 250 (269)
T cd03294 177 VDPDILLMDEAFSALDPLIRREMQDELLRLQAELQKTIVFITHDLDEALRLGDRIAIMKDGRLVQVGTPEEILT 250 (269)
T ss_pred cCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHHHHh
Confidence 99999999999999999 45555555532 23699999998865 554 89988898887754
|
This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK11124 artP arginine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.4e-36 Score=268.33 Aligned_cols=196 Identities=15% Similarity=0.115 Sum_probs=157.6
Q ss_pred EEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCC--------
Q 021362 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP-------- 148 (313)
Q Consensus 77 ~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~-------- 148 (313)
+|+++|+++.|++.. +|+|+||++++||+++|+||||||||||+++|+|+++ |++|+|.++|.+.
T Consensus 2 ~l~~~~l~~~~~~~~----il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~~~~~~~~~~ 74 (242)
T PRK11124 2 SIQLNGINCFYGAHQ----ALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEM---PRSGTLNIAGNHFDFSKTPSD 74 (242)
T ss_pred EEEEEeeEEEECCee----eEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCceEEEECCEecccccccch
Confidence 689999999998766 9999999999999999999999999999999999999 9999999998753
Q ss_pred ------CCeEEEEecCCCCCCcccCCcccChHHH-HHhcCCCCCccHHHHHHHHHHhhcC--CCccCCCCCCcCCCcchh
Q 021362 149 ------PDVATVLPMDGFHLYLSQLDAMEDPKEA-HARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVED 219 (313)
Q Consensus 149 ------~~~i~~v~qd~~~~~~~~ltv~e~~~~~-~~~~~~~~~~~~~~~~~~l~~l~~~--~~~~~~~LSgG~kqRv~i 219 (313)
.+.++|++|++..+. .+|+.||+.+. ....+........++.++++.++.. .+..+.+|||||+||++|
T Consensus 75 ~~~~~~~~~i~~~~q~~~~~~--~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~l 152 (242)
T PRK11124 75 KAIRELRRNVGMVFQQYNLWP--HLTVQQNLIEAPCRVLGLSKDQALARAEKLLERLRLKPYADRFPLHLSGGQQQRVAI 152 (242)
T ss_pred hhHHHHHhheEEEecCccccC--CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHH
Confidence 235899999965443 47999999753 2233332222345577788888743 456777999999999999
Q ss_pred hhhhccCceEEEEcCCccccCh----hhHHHHHhhccc---eEEEEcChHHHHH---HHh----hcccccCCchHH
Q 021362 220 DILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFDE---KWFIEVDLDTAMQ---RVL----KRHISTGKPPDV 281 (313)
Q Consensus 220 a~al~~~ar~Li~d~~~lllDE----~~~~~l~~l~~~---~i~vtHd~~~~~~---rv~----griv~~G~~~ev 281 (313)
|++++.+++++++|+|+..||. .+++.|+++.+. .+++|||++++.. |++ |+++..|+++++
T Consensus 153 aral~~~p~llilDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~~d~i~~l~~g~i~~~~~~~~~ 228 (242)
T PRK11124 153 ARALMMEPQVLLFDEPTAALDPEITAQIVSIIRELAETGITQVIVTHEVEVARKTASRVVYMENGHIVEQGDASCF 228 (242)
T ss_pred HHHHhcCCCEEEEcCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHHh
Confidence 9999999999999999999999 444555554322 4699999999865 554 888888887765
|
|
| >TIGR02673 FtsE cell division ATP-binding protein FtsE | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.6e-36 Score=263.01 Aligned_cols=181 Identities=15% Similarity=0.109 Sum_probs=147.3
Q ss_pred EEEEccceEEcc-ccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCC-------
Q 021362 77 VVEARCMDEVYD-ALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP------- 148 (313)
Q Consensus 77 ~l~~~~l~~~y~-~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~------- 148 (313)
||+++|+++.|+ +.. +|+|+||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|.+.
T Consensus 1 ~l~~~~l~~~~~~~~~----il~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~---~~~G~i~~~g~~~~~~~~~~ 73 (214)
T TIGR02673 1 MIEFHNVSKAYPGGVA----ALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALT---PSRGQVRIAGEDVNRLRGRQ 73 (214)
T ss_pred CEEEEeeeEEeCCCce----eecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCceEEECCEEcccCCHHH
Confidence 488999999994 444 9999999999999999999999999999999999999 9999999998653
Q ss_pred ----CCeEEEEecCCCCCCcccCCcccChHHHHHhcCCCCCccHHHHHHHHHHhhcC--CCccCCCCCCcCCCcchhhhh
Q 021362 149 ----PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDIL 222 (313)
Q Consensus 149 ----~~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~~~~~LSgG~kqRv~ia~a 222 (313)
.+.++|++|++..++ .+|+.+|+.+.....+.......+++.++++.++.. .++.+.+|||||+||++||++
T Consensus 74 ~~~~~~~i~~~~q~~~~~~--~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~a 151 (214)
T TIGR02673 74 LPLLRRRIGVVFQDFRLLP--DRTVYENVALPLEVRGKKEREIQRRVGAALRQVGLEHKADAFPEQLSGGEQQRVAIARA 151 (214)
T ss_pred HHHHHhheEEEecChhhcc--CCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHH
Confidence 235899999965443 479999998875444332223345677888888743 355677999999999999999
Q ss_pred hccCceEEEEcCCccccCh----hhHHHHHhhccc---eEEEEcChHHHHH
Q 021362 223 VGLQHKVVIVDGNYLFLDG----GVWKDVSSMFDE---KWFIEVDLDTAMQ 266 (313)
Q Consensus 223 l~~~ar~Li~d~~~lllDE----~~~~~l~~l~~~---~i~vtHd~~~~~~ 266 (313)
++.++++|++|+|+..||. .+++.|+++.++ .+++|||++++..
T Consensus 152 l~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~ 202 (214)
T TIGR02673 152 IVNSPPLLLADEPTGNLDPDLSERILDLLKRLNKRGTTVIVATHDLSLVDR 202 (214)
T ss_pred HhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHH
Confidence 9999999999999999999 455555555332 4699999998765
|
This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein. |
| >PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-36 Score=274.79 Aligned_cols=201 Identities=18% Similarity=0.176 Sum_probs=163.4
Q ss_pred cEEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCC-------
Q 021362 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP------- 148 (313)
Q Consensus 76 ~~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~------- 148 (313)
++|+++||++.|++. ...+|+++||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.+.
T Consensus 4 ~~l~~~~l~~~~~~~--~~~~l~~vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~---p~~G~i~~~g~~i~~~~~~~ 78 (279)
T PRK13635 4 EIIRVEHISFRYPDA--ATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLL---PEAGTITVGGMVLSEETVWD 78 (279)
T ss_pred ceEEEEEEEEEeCCC--CccceeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC---CCCcEEEECCEECCcCcHHH
Confidence 379999999999742 1129999999999999999999999999999999999999 9999999999753
Q ss_pred -CCeEEEEecCCC-CCCcccCCcccChHHHHHhcCCCCCccHHHHHHHHHHhhc--CCCccCCCCCCcCCCcchhhhhhc
Q 021362 149 -PDVATVLPMDGF-HLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDILVG 224 (313)
Q Consensus 149 -~~~i~~v~qd~~-~~~~~~ltv~e~~~~~~~~~~~~~~~~~~~~~~~l~~l~~--~~~~~~~~LSgG~kqRv~ia~al~ 224 (313)
.+.++|++|++. .++ ..|+.||+.+.....+.+.....+++.++++.++. ..+.++.+|||||+||++||++++
T Consensus 79 ~~~~i~~~~q~~~~~~~--~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrv~laral~ 156 (279)
T PRK13635 79 VRRQVGMVFQNPDNQFV--GATVQDDVAFGLENIGVPREEMVERVDQALRQVGMEDFLNREPHRLSGGQKQRVAIAGVLA 156 (279)
T ss_pred HhhheEEEEeCHHHhcc--cccHHHHHhhhHhhCCCCHHHHHHHHHHHHHHcCChhhhhCCcccCCHHHHHHHHHHHHHH
Confidence 235899999963 233 37999999887554444333334567888888774 345677799999999999999999
Q ss_pred cCceEEEEcCCccccCh----hhHHHHHhhccc----eEEEEcChHHHHH--HHh----hcccccCCchHHHH
Q 021362 225 LQHKVVIVDGNYLFLDG----GVWKDVSSMFDE----KWFIEVDLDTAMQ--RVL----KRHISTGKPPDVAK 283 (313)
Q Consensus 225 ~~ar~Li~d~~~lllDE----~~~~~l~~l~~~----~i~vtHd~~~~~~--rv~----griv~~G~~~ev~~ 283 (313)
.++++|++|+|+..||. .+++.|+++.++ .+++|||++++.. |++ |++++.|+++++..
T Consensus 157 ~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~~~~tilivsH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 229 (279)
T PRK13635 157 LQPDIIILDEATSMLDPRGRREVLETVRQLKEQKGITVLSITHDLDEAAQADRVIVMNKGEILEEGTPEEIFK 229 (279)
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHcCCEEEEEECCEEEEECCHHHHhc
Confidence 99999999999999999 566666666532 3699999999875 554 89999999887754
|
|
| >PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-35 Score=265.12 Aligned_cols=186 Identities=16% Similarity=0.054 Sum_probs=148.8
Q ss_pred cEEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCCC------
Q 021362 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPP------ 149 (313)
Q Consensus 76 ~~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~~------ 149 (313)
++|+++|+++.|++......+|+++||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|.+..
T Consensus 5 ~~l~~~~l~~~~~~~~~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~---p~~G~i~~~g~~~~~~~~~~ 81 (228)
T PRK10584 5 NIVEVHHLKKSVGQGEHELSILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDD---GSSGEVSLVGQPLHQMDEEA 81 (228)
T ss_pred ceEEEeeeEEEccCCCcceEEEeccEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCC---CCCeeEEECCEEcccCCHHH
Confidence 479999999999752111238999999999999999999999999999999999999 99999999986531
Q ss_pred ------CeEEEEecCCCCCCcccCCcccChHHHHHhcCCCCCccHHHHHHHHHHhhcC--CCccCCCCCCcCCCcchhhh
Q 021362 150 ------DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDI 221 (313)
Q Consensus 150 ------~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~~~~~LSgG~kqRv~ia~ 221 (313)
..++|++|++..+. .+|+.||+.+.....+.......+++.++++.++.. .+.++.+|||||+||++||+
T Consensus 82 ~~~~~~~~i~~~~q~~~l~~--~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Ge~qrl~la~ 159 (228)
T PRK10584 82 RAKLRAKHVGFVFQSFMLIP--TLNALENVELPALLRGESSRQSRNGAKALLEQLGLGKRLDHLPAQLSGGEQQRVALAR 159 (228)
T ss_pred HHHHHhheEEEEEcccccCC--CcCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCChhhCCHHHHHHHHHHH
Confidence 35899999965433 479999998765433333233455678888888843 35677799999999999999
Q ss_pred hhccCceEEEEcCCccccCh----hhHHHHHhhcc----ceEEEEcChHHHHH
Q 021362 222 LVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFD----EKWFIEVDLDTAMQ 266 (313)
Q Consensus 222 al~~~ar~Li~d~~~lllDE----~~~~~l~~l~~----~~i~vtHd~~~~~~ 266 (313)
+++.++++|++|+|+..||. .+++.|+++.. ..+++|||++++..
T Consensus 160 al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~ 212 (228)
T PRK10584 160 AFNGRPDVLFADEPTGNLDRQTGDKIADLLFSLNREHGTTLILVTHDLQLAAR 212 (228)
T ss_pred HHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHh
Confidence 99999999999999999999 45556655532 24799999998744
|
|
| >cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-36 Score=262.42 Aligned_cols=176 Identities=16% Similarity=0.047 Sum_probs=144.1
Q ss_pred EEccceEEccc-cccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCC-----CCeE
Q 021362 79 EARCMDEVYDA-LAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP-----PDVA 152 (313)
Q Consensus 79 ~~~~l~~~y~~-~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~-----~~~i 152 (313)
+++|+++.|++ .. +|+++||++++|++++|+||||||||||+++|+|+++ |++|+|.++|.+. .+.+
T Consensus 1 ~~~~l~~~~~~~~~----~l~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---p~~G~i~~~g~~~~~~~~~~~i 73 (205)
T cd03226 1 RIENISFSYKKGTE----ILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIK---ESSGSILLNGKPIKAKERRKSI 73 (205)
T ss_pred CcccEEEEeCCcCc----eeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC---CCceEEEECCEEhhhHHhhcce
Confidence 36899999986 55 9999999999999999999999999999999999999 9999999999763 2469
Q ss_pred EEEecCCCCCCcccCCcccChHHHHHhcCCCCCccHHHHHHHHHHhhc--CCCccCCCCCCcCCCcchhhhhhccCceEE
Q 021362 153 TVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDILVGLQHKVV 230 (313)
Q Consensus 153 ~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~~~~~~~~~~~~l~~l~~--~~~~~~~~LSgG~kqRv~ia~al~~~ar~L 230 (313)
+|++|++..... .+|+.||+.+.....+ ....++.++++.++. ..++++.+||||||||++||++++.++++|
T Consensus 74 ~~~~q~~~~~~~-~~tv~e~l~~~~~~~~----~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~ll 148 (205)
T cd03226 74 GYVMQDVDYQLF-TDSVREELLLGLKELD----AGNEQAETVLKDLDLYALKERHPLSLSGGQKQRLAIAAALLSGKDLL 148 (205)
T ss_pred EEEecChhhhhh-hccHHHHHhhhhhhcC----ccHHHHHHHHHHcCCchhcCCCchhCCHHHHHHHHHHHHHHhCCCEE
Confidence 999999632222 3699999987643322 223567888998884 346677799999999999999999999999
Q ss_pred EEcCCccccCh----hhHHHHHhhccc---eEEEEcChHHHHH
Q 021362 231 IVDGNYLFLDG----GVWKDVSSMFDE---KWFIEVDLDTAMQ 266 (313)
Q Consensus 231 i~d~~~lllDE----~~~~~l~~l~~~---~i~vtHd~~~~~~ 266 (313)
++|+|+..||. .+++.|+++.++ .+++|||++++..
T Consensus 149 llDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sH~~~~~~~ 191 (205)
T cd03226 149 IFDEPTSGLDYKNMERVGELIRELAAQGKAVIVITHDYEFLAK 191 (205)
T ss_pred EEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHH
Confidence 99999999999 455555555332 4799999998764
|
The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. |
| >PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-35 Score=270.00 Aligned_cols=198 Identities=15% Similarity=0.138 Sum_probs=160.9
Q ss_pred EEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCC--------
Q 021362 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP-------- 148 (313)
Q Consensus 77 ~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~-------- 148 (313)
+|+++||++.|++.. +|+|+||+|++|++++|+|+||||||||+++|+|+++ |++|+|.++|.+.
T Consensus 5 ~l~~~~l~~~~~~~~----~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~---~~~G~i~~~g~~~~~~~~~~~ 77 (257)
T PRK10619 5 KLNVIDLHKRYGEHE----VLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEK---PSEGSIVVNGQTINLVRDKDG 77 (257)
T ss_pred cEEEeeeEEEECCEE----EEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCeEEEECCEEccccccccc
Confidence 699999999998766 9999999999999999999999999999999999999 9999999998643
Q ss_pred -------------CCeEEEEecCCCCCCcccCCcccChHHHHH-hcCCCCCccHHHHHHHHHHhhcCC---CccCCCCCC
Q 021362 149 -------------PDVATVLPMDGFHLYLSQLDAMEDPKEAHA-RRGAPWTFNPLLLLNCLKNLRNQG---SVYAPSFDH 211 (313)
Q Consensus 149 -------------~~~i~~v~qd~~~~~~~~ltv~e~~~~~~~-~~~~~~~~~~~~~~~~l~~l~~~~---~~~~~~LSg 211 (313)
.+.++|++|++..+. .+|++||+.+... ..+.......+++.++++.++... +.++.+|||
T Consensus 78 ~~~~~~~~~~~~~~~~i~~v~q~~~l~~--~~sv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LS~ 155 (257)
T PRK10619 78 QLKVADKNQLRLLRTRLTMVFQHFNLWS--HMTVLENVMEAPIQVLGLSKQEARERAVKYLAKVGIDERAQGKYPVHLSG 155 (257)
T ss_pred ccccccchHHHHHhhceEEEecCcccCC--CCcHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCH
Confidence 235899999965433 4899999987532 222222234456778889888532 566779999
Q ss_pred cCCCcchhhhhhccCceEEEEcCCccccCh----hhHHHHHhhccc---eEEEEcChHHHHH---HHh----hcccccCC
Q 021362 212 GVGDPVEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFDE---KWFIEVDLDTAMQ---RVL----KRHISTGK 277 (313)
Q Consensus 212 G~kqRv~ia~al~~~ar~Li~d~~~lllDE----~~~~~l~~l~~~---~i~vtHd~~~~~~---rv~----griv~~G~ 277 (313)
||+||++||++++.++++|++|+|+..||. .+.+.|+++.+. .+++|||++++.. |++ |++++.|+
T Consensus 156 G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~ 235 (257)
T PRK10619 156 GQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIEEEGA 235 (257)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCC
Confidence 999999999999999999999999999999 445555555432 4799999999876 555 89999998
Q ss_pred chHHHH
Q 021362 278 PPDVAK 283 (313)
Q Consensus 278 ~~ev~~ 283 (313)
++++..
T Consensus 236 ~~~~~~ 241 (257)
T PRK10619 236 PEQLFG 241 (257)
T ss_pred HHHhhh
Confidence 887753
|
|
| >cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-35 Score=263.31 Aligned_cols=184 Identities=16% Similarity=0.198 Sum_probs=148.2
Q ss_pred EEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCC---CCeEEE
Q 021362 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP---PDVATV 154 (313)
Q Consensus 78 l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~---~~~i~~ 154 (313)
|+++|+++.|++......+|+++||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|.+. .+.++|
T Consensus 1 l~~~~l~~~~~~~~~~~~il~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~---~~~G~i~~~g~~~~~~~~~i~~ 77 (220)
T cd03293 1 LEVRNVSKTYGGGGGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLER---PTSGEVLVDGEPVTGPGPDRGY 77 (220)
T ss_pred CeEEEEEEEcCCCCcceEEEeceeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCC---CCceEEEECCEECccccCcEEE
Confidence 4689999999861111129999999999999999999999999999999999999 9999999999653 356999
Q ss_pred EecCCCCCCcccCCcccChHHHHHhcCCCCCccHHHHHHHHHHhhcC--CCccCCCCCCcCCCcchhhhhhccCceEEEE
Q 021362 155 LPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGLQHKVVIV 232 (313)
Q Consensus 155 v~qd~~~~~~~~ltv~e~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~~~~~LSgG~kqRv~ia~al~~~ar~Li~ 232 (313)
++|++..+. .+|+.||+.+....++.......+++.++++.++.. .++.+.+||||||||++||++++.+++++++
T Consensus 78 v~q~~~~~~--~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~la~al~~~p~lllL 155 (220)
T cd03293 78 VFQQDALLP--WLTVLDNVALGLELQGVPKAEARERAEELLELVGLSGFENAYPHQLSGGMRQRVALARALAVDPDVLLL 155 (220)
T ss_pred Eeccccccc--CCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEE
Confidence 999965433 479999998875544433223345677888888743 4567779999999999999999999999999
Q ss_pred cCCccccCh----hhHHHHHhhcc----ceEEEEcChHHHHH
Q 021362 233 DGNYLFLDG----GVWKDVSSMFD----EKWFIEVDLDTAMQ 266 (313)
Q Consensus 233 d~~~lllDE----~~~~~l~~l~~----~~i~vtHd~~~~~~ 266 (313)
|+|+..||. .+++.|+++.. ..+++|||++++..
T Consensus 156 DEPt~~LD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~~~~~ 197 (220)
T cd03293 156 DEPFSALDALTREQLQEELLDIWRETGKTVLLVTHDIDEAVF 197 (220)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHH
Confidence 999999999 55566666532 24799999998765
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-35 Score=245.31 Aligned_cols=196 Identities=17% Similarity=0.165 Sum_probs=169.1
Q ss_pred EEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCC---------
Q 021362 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK--------- 147 (313)
Q Consensus 77 ~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~--------- 147 (313)
.|+++|+++.||... +|.||+|+-+.||.+.++||||+|||||+|.|.-+.- |.+|+..+.|..
T Consensus 2 sirv~~in~~yg~~q----~lfdi~l~~~~getlvllgpsgagkssllr~lnlle~---p~sg~l~ia~~~fd~s~~~~~ 74 (242)
T COG4161 2 SIQLNGINCFYGAHQ----ALFDITLDCPEGETLVLLGPSGAGKSSLLRVLNLLEM---PRSGTLNIAGNHFDFSKTPSD 74 (242)
T ss_pred ceEEcccccccccch----heeeeeecCCCCCEEEEECCCCCchHHHHHHHHHHhC---CCCCeEEecccccccccCccH
Confidence 389999999999988 9999999999999999999999999999999999988 999999887643
Q ss_pred -----CCCeEEEEecCCCCCCcccCCcccChHHH-HHhcCCCCCccHHHHHHHHHHhh--cCCCccCCCCCCcCCCcchh
Q 021362 148 -----PPDVATVLPMDGFHLYLSQLDAMEDPKEA-HARRGAPWTFNPLLLLNCLKNLR--NQGSVYAPSFDHGVGDPVED 219 (313)
Q Consensus 148 -----~~~~i~~v~qd~~~~~~~~ltv~e~~~~~-~~~~~~~~~~~~~~~~~~l~~l~--~~~~~~~~~LSgG~kqRv~i 219 (313)
.++.+|+|||. |++++ ++||.||+-.. .+..|.++.+...++.++|+++. ...++.+-.|||||+|||+|
T Consensus 75 k~i~~lr~~vgmvfqq-y~lwp-hltv~enlieap~kv~gl~~~qa~~~a~ellkrlrl~~~adr~plhlsggqqqrvai 152 (242)
T COG4161 75 KAIRDLRRNVGMVFQQ-YNLWP-HLTVQENLIEAPCRVLGLSKDQALARAEKLLKRLRLKPYADRYPLHLSGGQQQRVAI 152 (242)
T ss_pred HHHHHHHHhhhhhhhh-hccCc-hhHHHHHHHhhhHHHhCCCHHHHHHHHHHHHHHhccccccccCceecccchhhhHHH
Confidence 23459999999 66654 79999998764 45678888888888999999988 45677777999999999999
Q ss_pred hhhhccCceEEEEcCCccccCh----hhHHHHHhhccce---EEEEcChHHHHH---HHh----hcccccCCchHH
Q 021362 220 DILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFDEK---WFIEVDLDTAMQ---RVL----KRHISTGKPPDV 281 (313)
Q Consensus 220 a~al~~~ar~Li~d~~~lllDE----~~~~~l~~l~~~~---i~vtHd~~~~~~---rv~----griv~~G~~~ev 281 (313)
|+|++..+.+|++|+|+.-||+ .+.+.|+++...+ ++|||..+.+.+ |++ |++++.|+..-+
T Consensus 153 aralmmkpqvllfdeptaaldpeitaqvv~iikel~~tgitqvivthev~va~k~as~vvyme~g~ive~g~a~~f 228 (242)
T COG4161 153 ARALMMEPQVLLFDEPTAALDPEITAQIVSIIKELAETGITQVIVTHEVEVARKTASRVVYMENGHIVEQGDASCF 228 (242)
T ss_pred HHHHhcCCcEEeecCcccccCHHHHHHHHHHHHHHHhcCceEEEEEeehhHHHhhhhheEeeecCeeEeecchhhc
Confidence 9999999999999999999999 4566667776665 599999999988 766 999999976544
|
|
| >PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.8e-36 Score=267.76 Aligned_cols=198 Identities=12% Similarity=0.109 Sum_probs=158.1
Q ss_pred ccEEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCC------
Q 021362 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP------ 148 (313)
Q Consensus 75 m~~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~------ 148 (313)
|++|+++|+++.|++.. +|+++||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.+.
T Consensus 3 ~~~l~~~~l~~~~~~~~----~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~---p~~G~i~~~g~~~~~~~~~ 75 (237)
T PRK11614 3 KVMLSFDKVSAHYGKIQ----ALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPR---ATSGRIVFDGKDITDWQTA 75 (237)
T ss_pred ccEEEEEeEEEeeCCce----eeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHcCCCC---CCCceEEECCEecCCCCHH
Confidence 45899999999998765 9999999999999999999999999999999999999 9999999999653
Q ss_pred ---CCeEEEEecCCCCCCcccCCcccChHHHHHhcCCCCCccHHHHHHHHHHhh---cCCCccCCCCCCcCCCcchhhhh
Q 021362 149 ---PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLR---NQGSVYAPSFDHGVGDPVEDDIL 222 (313)
Q Consensus 149 ---~~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~~~~~~~~~~~~l~~l~---~~~~~~~~~LSgG~kqRv~ia~a 222 (313)
...++|++|+...++ .+|+.+|+.+..... ......+.+.++++.++ ...+.++.+|||||+||++||++
T Consensus 76 ~~~~~~i~~~~q~~~~~~--~~tv~~~l~~~~~~~--~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrl~la~a 151 (237)
T PRK11614 76 KIMREAVAIVPEGRRVFS--RMTVEENLAMGGFFA--ERDQFQERIKWVYELFPRLHERRIQRAGTMSGGEQQMLAIGRA 151 (237)
T ss_pred HHHHhCEEEeccCcccCC--CCcHHHHHHHhhhcc--ChhHHHHHHHHHHHHHHHHHHHHhCchhhCCHHHHHHHHHHHH
Confidence 234899999965443 479999998754221 11122334556666653 23455777999999999999999
Q ss_pred hccCceEEEEcCCccccCh----hhHHHHHhhccc---eEEEEcChHHHHH---HHh----hcccccCCchHHHH
Q 021362 223 VGLQHKVVIVDGNYLFLDG----GVWKDVSSMFDE---KWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAK 283 (313)
Q Consensus 223 l~~~ar~Li~d~~~lllDE----~~~~~l~~l~~~---~i~vtHd~~~~~~---rv~----griv~~G~~~ev~~ 283 (313)
++.++++|++|+|+..||. .+++.|+++.+. .|++|||++++.. |++ |+++..|+++++..
T Consensus 152 l~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 226 (237)
T PRK11614 152 LMSQPRLLLLDEPSLGLAPIIIQQIFDTIEQLREQGMTIFLVEQNANQALKLADRGYVLENGHVVLEDTGDALLA 226 (237)
T ss_pred HHhCCCEEEEcCccccCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHHHHHhhCCEEEEEeCCEEEeeCCHHHHhc
Confidence 9999999999999999999 445555555432 3699999998876 554 89999999888753
|
|
| >TIGR02769 nickel_nikE nickel import ATP-binding protein NikE | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-35 Score=270.15 Aligned_cols=204 Identities=15% Similarity=0.123 Sum_probs=162.0
Q ss_pred EEEEccceEEccccc-----cccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCC---
Q 021362 77 VVEARCMDEVYDALA-----QRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP--- 148 (313)
Q Consensus 77 ~l~~~~l~~~y~~~~-----~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~--- 148 (313)
||+++||++.|+... ....+|+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.+.
T Consensus 2 ~l~~~~l~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---p~~G~i~~~g~~i~~~ 78 (265)
T TIGR02769 2 LLEVRDVTHTYRTGGLFGAKQRAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEK---PAQGTVSFRGQDLYQL 78 (265)
T ss_pred eEEEEeEEEEeccCccccccCceEEeeCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCcEEEECCEEcccc
Confidence 689999999996310 01239999999999999999999999999999999999999 9999999999653
Q ss_pred --------CCeEEEEecCCCCCCcccCCcccChHHHHHhc-CCCCCccHHHHHHHHHHhhcC---CCccCCCCCCcCCCc
Q 021362 149 --------PDVATVLPMDGFHLYLSQLDAMEDPKEAHARR-GAPWTFNPLLLLNCLKNLRNQ---GSVYAPSFDHGVGDP 216 (313)
Q Consensus 149 --------~~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~-~~~~~~~~~~~~~~l~~l~~~---~~~~~~~LSgG~kqR 216 (313)
.+.++|++|++.....+.+|+.+|+.+..... +.......+++.++++.++.. .+.++.+|||||+||
T Consensus 79 ~~~~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGe~qr 158 (265)
T TIGR02769 79 DRKQRRAFRRDVQLVFQDSPSAVNPRMTVRQIIGEPLRHLTSLDESEQKARIAELLDMVGLRSEDADKLPRQLSGGQLQR 158 (265)
T ss_pred CHHHHHHHhhceEEEecChhhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChhhhhCChhhCCHHHHHH
Confidence 23599999996322223579999997765432 222223445678888888853 356777999999999
Q ss_pred chhhhhhccCceEEEEcCCccccCh----hhHHHHHhhcc----ceEEEEcChHHHHH---HHh----hcccccCCchHH
Q 021362 217 VEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFD----EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDV 281 (313)
Q Consensus 217 v~ia~al~~~ar~Li~d~~~lllDE----~~~~~l~~l~~----~~i~vtHd~~~~~~---rv~----griv~~G~~~ev 281 (313)
++||++++.++++|++|+|+..||. .+++.|+++.+ ..|++|||++.+.. |++ |++++.|+++++
T Consensus 159 v~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 238 (265)
T TIGR02769 159 INIARALAVKPKLIVLDEAVSNLDMVLQAVILELLRKLQQAFGTAYLFITHDLRLVQSFCQRVAVMDKGQIVEECDVAQL 238 (265)
T ss_pred HHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHHhcEEEEEeCCEEEEECCHHHH
Confidence 9999999999999999999999999 46666666643 24799999999875 554 899999998887
Q ss_pred HH
Q 021362 282 AK 283 (313)
Q Consensus 282 ~~ 283 (313)
..
T Consensus 239 ~~ 240 (265)
T TIGR02769 239 LS 240 (265)
T ss_pred cC
Confidence 53
|
This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. |
| >PRK14242 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-35 Score=267.04 Aligned_cols=201 Identities=13% Similarity=0.113 Sum_probs=158.7
Q ss_pred cEEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhccc--CCCCceeecCCCCC-----
Q 021362 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKI--WPQKASSFDSQVKP----- 148 (313)
Q Consensus 76 ~~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~--~p~~G~i~~~g~~~----- 148 (313)
|+|+++|+++.|++.. +|+++||+|++||+++|+||||||||||+++|+|++... .|++|+|.++|++.
T Consensus 5 ~~l~~~~l~~~~~~~~----il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~ 80 (253)
T PRK14242 5 PKMEARGLSFFYGDFQ----ALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENIYDPHV 80 (253)
T ss_pred cEEEEeeeEEEECCee----eecceeEEEeCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCCceEEEECCEEcccccc
Confidence 5799999999998765 999999999999999999999999999999999986300 14799999999653
Q ss_pred -----CCeEEEEecCCCCCCcccCCcccChHHHHHhcCCCC-CccHHHHHHHHHHhhcC------CCccCCCCCCcCCCc
Q 021362 149 -----PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPW-TFNPLLLLNCLKNLRNQ------GSVYAPSFDHGVGDP 216 (313)
Q Consensus 149 -----~~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~~-~~~~~~~~~~l~~l~~~------~~~~~~~LSgG~kqR 216 (313)
.+.++|++|++.. +. .|+.||+.+.....+... ....+++.++++.++.. .+..+.+|||||+||
T Consensus 81 ~~~~~~~~i~~v~q~~~~-~~--~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qr 157 (253)
T PRK14242 81 DVVELRRRVGMVFQKPNP-FP--KSIFENVAYGLRVNGVKDKAYLAERVERSLRHAALWDEVKDRLHESALGLSGGQQQR 157 (253)
T ss_pred CHHHHhhcEEEEecCCCC-Cc--CcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCchhhhHHhhCCcccCCHHHHHH
Confidence 2359999999643 33 499999988654433221 12345667778877642 355677999999999
Q ss_pred chhhhhhccCceEEEEcCCccccCh----hhHHHHHhhcc--ceEEEEcChHHHHH---HHh----hcccccCCchHHHH
Q 021362 217 VEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFD--EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAK 283 (313)
Q Consensus 217 v~ia~al~~~ar~Li~d~~~lllDE----~~~~~l~~l~~--~~i~vtHd~~~~~~---rv~----griv~~G~~~ev~~ 283 (313)
++||++++.++++|++|+|+..||. .+++.|+++.+ ..+++|||++++.. |++ |++++.|.++++..
T Consensus 158 v~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tvii~tH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 237 (253)
T PRK14242 158 LCIARALAVEPEVLLMDEPASALDPIATQKIEELIHELKARYTIIIVTHNMQQAARVSDVTAFFYMGKLIEVGPTEQIFT 237 (253)
T ss_pred HHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCeEEEEEecHHHHHHhCCEEEEEECCEEEEeCCHHHHHc
Confidence 9999999999999999999999999 45555555533 24699999999876 554 89988898877643
|
|
| >PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-35 Score=268.49 Aligned_cols=201 Identities=16% Similarity=0.155 Sum_probs=160.5
Q ss_pred cEEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCC-----CC-
Q 021362 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK-----PP- 149 (313)
Q Consensus 76 ~~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~-----~~- 149 (313)
++|+++|+++.|++.. +|+++||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|.+ ..
T Consensus 5 ~~l~~~~l~~~~~~~~----il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---p~~G~i~~~g~~~~~~~i~~ 77 (258)
T PRK11701 5 PLLSVRGLTKLYGPRK----GCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLA---PDAGEVHYRMRDGQLRDLYA 77 (258)
T ss_pred ceEEEeeeEEEcCCce----eeeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCCEEEECCcccccccccc
Confidence 3799999999998765 9999999999999999999999999999999999999 999999999975 21
Q ss_pred -----------CeEEEEecCCCCCCcccCCcccChHHHHHhcCCC-CCccHHHHHHHHHHhhcC---CCccCCCCCCcCC
Q 021362 150 -----------DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAP-WTFNPLLLLNCLKNLRNQ---GSVYAPSFDHGVG 214 (313)
Q Consensus 150 -----------~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~-~~~~~~~~~~~l~~l~~~---~~~~~~~LSgG~k 214 (313)
..++|++|++.......+++.+|+.+.....+.. ......++.++++.++.. .+..+.+|||||+
T Consensus 78 ~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~Gq~ 157 (258)
T PRK11701 78 LSEAERRRLLRTEWGFVHQHPRDGLRMQVSAGGNIGERLMAVGARHYGDIRATAGDWLERVEIDAARIDDLPTTFSGGMQ 157 (258)
T ss_pred CCHHHHHHHhhcceEEEeeCcccccCccccHHHHHHHHHHHhccCcHHHHHHHHHHHHHHcCCChhHHhCCCccCCHHHH
Confidence 2489999996432333478888987654322211 112345567888888753 3567779999999
Q ss_pred CcchhhhhhccCceEEEEcCCccccCh----hhHHHHHhhcc----ceEEEEcChHHHHH---HHh----hcccccCCch
Q 021362 215 DPVEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFD----EKWFIEVDLDTAMQ---RVL----KRHISTGKPP 279 (313)
Q Consensus 215 qRv~ia~al~~~ar~Li~d~~~lllDE----~~~~~l~~l~~----~~i~vtHd~~~~~~---rv~----griv~~G~~~ 279 (313)
||++||++++.++++|++|+|+..||. .+++.|+++.+ ..|++|||++++.. +++ |++++.|+++
T Consensus 158 qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~isH~~~~~~~~~d~i~~l~~g~i~~~~~~~ 237 (258)
T PRK11701 158 QRLQIARNLVTHPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLAVARLLAHRLLVMKQGRVVESGLTD 237 (258)
T ss_pred HHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHH
Confidence 999999999999999999999999999 44555555443 23699999999975 554 9999999888
Q ss_pred HHHH
Q 021362 280 DVAK 283 (313)
Q Consensus 280 ev~~ 283 (313)
++..
T Consensus 238 ~~~~ 241 (258)
T PRK11701 238 QVLD 241 (258)
T ss_pred HHhc
Confidence 7753
|
|
| >PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-35 Score=270.93 Aligned_cols=205 Identities=16% Similarity=0.144 Sum_probs=160.9
Q ss_pred cEEEEccceEEccccc-----cccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCCC-
Q 021362 76 PVVEARCMDEVYDALA-----QRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPP- 149 (313)
Q Consensus 76 ~~l~~~~l~~~y~~~~-----~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~~- 149 (313)
+||+++||++.|+... +...+|+|+||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|.+..
T Consensus 3 ~~l~~~~l~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~---p~~G~i~~~g~~~~~ 79 (267)
T PRK15112 3 TLLEVRNLSKTFRYRTGWFRRQTVEAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIE---PTSGELLIDDHPLHF 79 (267)
T ss_pred ceEEEeceEEEecCCCCcccccccceeeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhCCCC---CCCCEEEECCEECCC
Confidence 3699999999996321 11249999999999999999999999999999999999999 99999999986532
Q ss_pred -------CeEEEEecCCCCCCcccCCcccChHHHHHhc-CCCCCccHHHHHHHHHHhhcC---CCccCCCCCCcCCCcch
Q 021362 150 -------DVATVLPMDGFHLYLSQLDAMEDPKEAHARR-GAPWTFNPLLLLNCLKNLRNQ---GSVYAPSFDHGVGDPVE 218 (313)
Q Consensus 150 -------~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~-~~~~~~~~~~~~~~l~~l~~~---~~~~~~~LSgG~kqRv~ 218 (313)
..++|++|++..+..+.+++.+++.+..... +.......+.+.++++.++.. .+.++.+|||||+||++
T Consensus 80 ~~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~ 159 (267)
T PRK15112 80 GDYSYRSQRIRMIFQDPSTSLNPRQRISQILDFPLRLNTDLEPEQREKQIIETLRQVGLLPDHASYYPHMLAPGQKQRLG 159 (267)
T ss_pred CchhhHhccEEEEecCchhhcCcchhHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHHhcCchhcCHHHHHHHH
Confidence 3589999996432333578888887755432 222222345677888888852 34566799999999999
Q ss_pred hhhhhccCceEEEEcCCccccCh----hhHHHHHhhcc----ceEEEEcChHHHHH---HHh----hcccccCCchHHHH
Q 021362 219 DDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFD----EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAK 283 (313)
Q Consensus 219 ia~al~~~ar~Li~d~~~lllDE----~~~~~l~~l~~----~~i~vtHd~~~~~~---rv~----griv~~G~~~ev~~ 283 (313)
||++++.++++|++|+|+..||. .+++.|.++.+ ..|++|||++++.. |++ |++++.|+++++..
T Consensus 160 laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tviivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 239 (267)
T PRK15112 160 LARALILRPKVIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHLGMMKHISDQVLVMHQGEVVERGSTADVLA 239 (267)
T ss_pred HHHHHHhCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHHHHHHhcCEEEEEECCEEEecCCHHHHhc
Confidence 99999999999999999999999 45556666543 24799999999876 554 89988898877754
|
|
| >cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE) | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-35 Score=263.41 Aligned_cols=187 Identities=17% Similarity=0.165 Sum_probs=145.1
Q ss_pred EEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCC--------
Q 021362 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP-------- 148 (313)
Q Consensus 77 ~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~-------- 148 (313)
+|+++|+++.|++......+|+|+||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|.+.
T Consensus 1 ~l~~~~v~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~~~~~~~~~~ 77 (228)
T cd03257 1 LLEVKNLSVSFPTGGGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLK---PTSGSIIFDGKDLLKLSRRLR 77 (228)
T ss_pred CeEEEeeeEeccCCCcceeeecCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCceEEECCEEccccchhhH
Confidence 47899999999764101129999999999999999999999999999999999999 9999999998653
Q ss_pred ---CCeEEEEecCCCCCCcccCCcccChHHHHHhcCCCCC-ccHHH-HHHHHHHhhcC---CCccCCCCCCcCCCcchhh
Q 021362 149 ---PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWT-FNPLL-LLNCLKNLRNQ---GSVYAPSFDHGVGDPVEDD 220 (313)
Q Consensus 149 ---~~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~~~-~~~~~-~~~~l~~l~~~---~~~~~~~LSgG~kqRv~ia 220 (313)
.+.++|++|++.......+|+.+|+.+.....+.... ..... +.++++.++.. .+..+.+|||||+||++||
T Consensus 78 ~~~~~~i~~~~q~~~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~la 157 (228)
T cd03257 78 KIRRKEIQMVFQDPMSSLNPRMTIGEQIAEPLRIHGKLSKKEARKEAVLLLLVGVGLPEEVLNRYPHELSGGQRQRVAIA 157 (228)
T ss_pred HHhhccEEEEecCchhhcCCcCCHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHCCCChhHhhCCchhcCHHHHHHHHHH
Confidence 2358999999732222358999999876544332111 11122 24677777752 3567779999999999999
Q ss_pred hhhccCceEEEEcCCccccCh----hhHHHHHhhcc----ceEEEEcChHHHHH
Q 021362 221 ILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFD----EKWFIEVDLDTAMQ 266 (313)
Q Consensus 221 ~al~~~ar~Li~d~~~lllDE----~~~~~l~~l~~----~~i~vtHd~~~~~~ 266 (313)
++++.++++|++|+|+..||. .+++.|.++.+ ..|++|||++++..
T Consensus 158 ral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~ 211 (228)
T cd03257 158 RALALNPKLLIADEPTSALDVSVQAQILDLLKKLQEELGLTLLFITHDLGVVAK 211 (228)
T ss_pred HHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHH
Confidence 999999999999999999999 45556665543 24799999998875
|
The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF. |
| >PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-35 Score=272.74 Aligned_cols=198 Identities=18% Similarity=0.168 Sum_probs=160.9
Q ss_pred EEEEccceEEccc-cccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCC-------
Q 021362 77 VVEARCMDEVYDA-LAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP------- 148 (313)
Q Consensus 77 ~l~~~~l~~~y~~-~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~------- 148 (313)
||+++|+++.|++ .. +|+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.+.
T Consensus 1 ~l~~~~l~~~~~~~~~----~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~---~~~G~i~~~g~~~~~~~~~~ 73 (275)
T PRK13639 1 ILETRDLKYSYPDGTE----ALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILK---PTSGEVLIKGEPIKYDKKSL 73 (275)
T ss_pred CEEEEEEEEEeCCCCe----eeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCccEEEECCEECccccchH
Confidence 4889999999963 34 8999999999999999999999999999999999999 9999999999653
Q ss_pred ---CCeEEEEecCCC-CCCcccCCcccChHHHHHhcCCCCCccHHHHHHHHHHhhc--CCCccCCCCCCcCCCcchhhhh
Q 021362 149 ---PDVATVLPMDGF-HLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDIL 222 (313)
Q Consensus 149 ---~~~i~~v~qd~~-~~~~~~ltv~e~~~~~~~~~~~~~~~~~~~~~~~l~~l~~--~~~~~~~~LSgG~kqRv~ia~a 222 (313)
...++|++|++. .++. .|+.||+.+.....+.......+++.++++.++. ..++++.+|||||+||++||++
T Consensus 74 ~~~~~~i~~v~q~~~~~~~~--~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LS~Gq~qrv~lara 151 (275)
T PRK13639 74 LEVRKTVGIVFQNPDDQLFA--PTVEEDVAFGPLNLGLSKEEVEKRVKEALKAVGMEGFENKPPHHLSGGQKKRVAIAGI 151 (275)
T ss_pred HHHHhheEEEeeChhhhhcc--ccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchhhcCChhhCCHHHHHHHHHHHH
Confidence 234899999953 2232 6999999876443333222334567788888874 3566778999999999999999
Q ss_pred hccCceEEEEcCCccccCh----hhHHHHHhhccc---eEEEEcChHHHHH---HHh----hcccccCCchHHHH
Q 021362 223 VGLQHKVVIVDGNYLFLDG----GVWKDVSSMFDE---KWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAK 283 (313)
Q Consensus 223 l~~~ar~Li~d~~~lllDE----~~~~~l~~l~~~---~i~vtHd~~~~~~---rv~----griv~~G~~~ev~~ 283 (313)
++.++++|++|+|+..||. .+++.|.++.++ .+++|||++++.. |++ |++++.|+++++..
T Consensus 152 l~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~~til~vtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 226 (275)
T PRK13639 152 LAMKPEIIVLDEPTSGLDPMGASQIMKLLYDLNKEGITIIISTHDVDLVPVYADKVYVMSDGKIIKEGTPKEVFS 226 (275)
T ss_pred HhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 9999999999999999999 455666665432 4799999999876 555 89999999888754
|
|
| >PRK14250 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-35 Score=265.65 Aligned_cols=195 Identities=14% Similarity=0.087 Sum_probs=158.8
Q ss_pred ccEEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCC------
Q 021362 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP------ 148 (313)
Q Consensus 75 m~~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~------ 148 (313)
|.+|+++|+++.|++.. +|+|+||+|.+|++++|+||||||||||+++|+|+++ |++|+|.++|.+.
T Consensus 1 ~~~l~~~~l~~~~~~~~----~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---p~~G~i~~~g~~i~~~~~~ 73 (241)
T PRK14250 1 MNEIEFKEVSYSSFGKE----ILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLID---PTEGSILIDGVDIKTIDVI 73 (241)
T ss_pred CceEEEEeEEEEeCCee----eeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCcEEEECCEEhhhcChH
Confidence 45799999999998765 9999999999999999999999999999999999999 9999999999653
Q ss_pred --CCeEEEEecCCCCCCcccCCcccChHHHHHhcCCCCCccHHHHHHHHHHhhcC---CCccCCCCCCcCCCcchhhhhh
Q 021362 149 --PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ---GSVYAPSFDHGVGDPVEDDILV 223 (313)
Q Consensus 149 --~~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~---~~~~~~~LSgG~kqRv~ia~al 223 (313)
...++|++|++..+ . .|+.+|+.+.....+ ....++.++++.++.. .++++.+|||||+||++||+++
T Consensus 74 ~~~~~i~~~~q~~~~~-~--~tv~e~l~~~~~~~~----~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrl~la~al 146 (241)
T PRK14250 74 DLRRKIGMVFQQPHLF-E--GTVKDNIEYGPMLKG----EKNVDVEYYLSIVGLNKEYATRDVKNLSGGEAQRVSIARTL 146 (241)
T ss_pred HhhhcEEEEecCchhc-h--hhHHHHHhcchhhcC----cHHHHHHHHHHHcCCCHHHhhCCcccCCHHHHHHHHHHHHH
Confidence 24589999996543 2 599999876533221 2235677888888753 3567779999999999999999
Q ss_pred ccCceEEEEcCCccccCh----hhHHHHHhhcc----ceEEEEcChHHHHH---HHh----hcccccCCchHHHH
Q 021362 224 GLQHKVVIVDGNYLFLDG----GVWKDVSSMFD----EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAK 283 (313)
Q Consensus 224 ~~~ar~Li~d~~~lllDE----~~~~~l~~l~~----~~i~vtHd~~~~~~---rv~----griv~~G~~~ev~~ 283 (313)
+.++++|++|+|+..||. .+.+.|+++.+ ..+++|||++++.. |++ |+++..|++.++..
T Consensus 147 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 221 (241)
T PRK14250 147 ANNPEVLLLDEPTSALDPTSTEIIEELIVKLKNKMNLTVIWITHNMEQAKRIGDYTAFLNKGILVEYAKTYDFFT 221 (241)
T ss_pred hcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHHHHHHhCCEEEEEeCCEEEEeCCHHHHhc
Confidence 999999999999999999 44455555532 24799999999876 554 88988898887743
|
|
| >PRK13633 cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-35 Score=273.18 Aligned_cols=204 Identities=15% Similarity=0.180 Sum_probs=163.9
Q ss_pred cEEEEccceEEccccc--cccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCC-----
Q 021362 76 PVVEARCMDEVYDALA--QRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP----- 148 (313)
Q Consensus 76 ~~l~~~~l~~~y~~~~--~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~----- 148 (313)
+||+++|+++.|++.. +...+|+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.+.
T Consensus 3 ~~l~~~~l~~~~~~~~~~~~~~vl~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~---~~~G~i~i~g~~i~~~~~ 79 (280)
T PRK13633 3 EMIKCKNVSYKYESNEESTEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLI---PSEGKVYVDGLDTSDEEN 79 (280)
T ss_pred ceEEEeeeEEEcCCCCCCCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCceEEECCEecccccc
Confidence 4799999999997421 11239999999999999999999999999999999999999 9999999998653
Q ss_pred ----CCeEEEEecCCCCCCcccCCcccChHHHHHhcCCCCCccHHHHHHHHHHhhc--CCCccCCCCCCcCCCcchhhhh
Q 021362 149 ----PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDIL 222 (313)
Q Consensus 149 ----~~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~~~~~~~~~~~~l~~l~~--~~~~~~~~LSgG~kqRv~ia~a 222 (313)
.+.++|++|++..... ..++.+|+.+.....+.+.....+++.++++.++. ..++++.+|||||+||++||++
T Consensus 80 ~~~~~~~i~~v~q~~~~~~~-~~~v~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrv~lara 158 (280)
T PRK13633 80 LWDIRNKAGMVFQNPDNQIV-ATIVEEDVAFGPENLGIPPEEIRERVDESLKKVGMYEYRRHAPHLLSGGQKQRVAIAGI 158 (280)
T ss_pred HHHHhhheEEEecChhhhhc-cccHHHHHHhhHhhcCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHH
Confidence 2358999999632222 25899999887554444333344567888888874 3466778999999999999999
Q ss_pred hccCceEEEEcCCccccCh----hhHHHHHhhcc----ceEEEEcChHHHHH--HHh----hcccccCCchHHHH
Q 021362 223 VGLQHKVVIVDGNYLFLDG----GVWKDVSSMFD----EKWFIEVDLDTAMQ--RVL----KRHISTGKPPDVAK 283 (313)
Q Consensus 223 l~~~ar~Li~d~~~lllDE----~~~~~l~~l~~----~~i~vtHd~~~~~~--rv~----griv~~G~~~ev~~ 283 (313)
++.++++|++|+|+..||. .+++.|.++.+ .++++|||++++.. |++ |+++..|+++++..
T Consensus 159 l~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 233 (280)
T PRK13633 159 LAMRPECIIFDEPTAMLDPSGRREVVNTIKELNKKYGITIILITHYMEEAVEADRIIVMDSGKVVMEGTPKEIFK 233 (280)
T ss_pred HHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecChHHHhcCCEEEEEECCEEEEecCHHHHhc
Confidence 9999999999999999999 56666666643 24799999999876 555 89999999988754
|
|
| >PRK14241 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-35 Score=266.91 Aligned_cols=198 Identities=10% Similarity=0.111 Sum_probs=158.3
Q ss_pred EEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCC-----CCceeecCCCCC---
Q 021362 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWP-----QKASSFDSQVKP--- 148 (313)
Q Consensus 77 ~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p-----~~G~i~~~g~~~--- 148 (313)
+|+++|+++.|++.. +|+++||+|++||+++|+||||||||||+++|+|+++ | ++|+|.++|.+.
T Consensus 4 ~l~i~~v~~~~~~~~----~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~laGl~~---~~~~~~~~G~I~~~g~~~~~~ 76 (258)
T PRK14241 4 RIDVKDLNIYYGSFH----AVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHE---VIPGARVEGEVLLDGEDLYGP 76 (258)
T ss_pred cEEEeeEEEEECCEe----eeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhccCC---cccCCCcceEEEECCEecccc
Confidence 699999999998766 9999999999999999999999999999999999986 5 699999998653
Q ss_pred -------CCeEEEEecCCCCCCcccCCcccChHHHHHhcCC-CCCccHHHHHHHHHHhhc------CCCccCCCCCCcCC
Q 021362 149 -------PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGA-PWTFNPLLLLNCLKNLRN------QGSVYAPSFDHGVG 214 (313)
Q Consensus 149 -------~~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~-~~~~~~~~~~~~l~~l~~------~~~~~~~~LSgG~k 214 (313)
.+.++|++|+...++ .+|+.+|+.+.....+. ......+++.++++.++. ..+..+.+|||||+
T Consensus 77 ~~~~~~~~~~i~~~~q~~~~~~--~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~ 154 (258)
T PRK14241 77 GVDPVAVRRTIGMVFQRPNPFP--TMSIRDNVVAGLKLNGVRNKKDLDELVEKSLRGANLWNEVKDRLDKPGGGLSGGQQ 154 (258)
T ss_pred ccChHHHhcceEEEccccccCC--CCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhhHhhCCcccCCHHHH
Confidence 135899999965443 47999999876544332 222233456777877764 23556779999999
Q ss_pred CcchhhhhhccCceEEEEcCCccccCh----hhHHHHHhhcc--ceEEEEcChHHHHH---HHh----------hccccc
Q 021362 215 DPVEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFD--EKWFIEVDLDTAMQ---RVL----------KRHIST 275 (313)
Q Consensus 215 qRv~ia~al~~~ar~Li~d~~~lllDE----~~~~~l~~l~~--~~i~vtHd~~~~~~---rv~----------griv~~ 275 (313)
||++||++++.++++|++|+|+..||. .+++.|.++.+ ..|++|||++++.. |++ |++++.
T Consensus 155 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tviivsH~~~~~~~~~d~i~~l~~~~~~~~g~i~~~ 234 (258)
T PRK14241 155 QRLCIARAIAVEPDVLLMDEPCSALDPISTLAIEDLINELKQDYTIVIVTHNMQQAARVSDQTAFFNLEATGKPGRLVEI 234 (258)
T ss_pred HHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEecccCCCCceEEec
Confidence 999999999999999999999999999 45555555533 24799999999876 442 788888
Q ss_pred CCchHHHH
Q 021362 276 GKPPDVAK 283 (313)
Q Consensus 276 G~~~ev~~ 283 (313)
|+++++..
T Consensus 235 ~~~~~~~~ 242 (258)
T PRK14241 235 DDTEKIFS 242 (258)
T ss_pred CCHHHHHh
Confidence 88877743
|
|
| >PRK10261 glutathione transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-35 Score=298.73 Aligned_cols=205 Identities=16% Similarity=0.153 Sum_probs=165.3
Q ss_pred cEEEEccceEEccccc-------cccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCC
Q 021362 76 PVVEARCMDEVYDALA-------QRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP 148 (313)
Q Consensus 76 ~~l~~~~l~~~y~~~~-------~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~ 148 (313)
++|+++||++.|+... ....+|+|+||+|++||++||+||||||||||+++|+|+++ |++|+|+++|.+.
T Consensus 312 ~~L~~~~l~~~y~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~lvG~nGsGKSTLlk~i~Gl~~---p~~G~I~~~g~~i 388 (623)
T PRK10261 312 PILQVRNLVTRFPLRSGLLNRVTREVHAVEKVSFDLWPGETLSLVGESGSGKSTTGRALLRLVE---SQGGEIIFNGQRI 388 (623)
T ss_pred ceEEEeeeEEEEcCCCccccccCCceEEEeeeEeEEcCCCEEEEECCCCCCHHHHHHHHHcCCC---CCCcEEEECCEEC
Confidence 5899999999996210 01238999999999999999999999999999999999999 9999999998642
Q ss_pred -----------CCeEEEEecCCCCCCcccCCcccChHHHHHhcCCC-CCccHHHHHHHHHHhhcC---CCccCCCCCCcC
Q 021362 149 -----------PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAP-WTFNPLLLLNCLKNLRNQ---GSVYAPSFDHGV 213 (313)
Q Consensus 149 -----------~~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~-~~~~~~~~~~~l~~l~~~---~~~~~~~LSgG~ 213 (313)
.+.++|+||+++....+.+|+.+|+.+.....+.. .....+++.++|+.++.. .++++.+|||||
T Consensus 389 ~~~~~~~~~~~~~~i~~v~Q~~~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~~~~LSgGq 468 (623)
T PRK10261 389 DTLSPGKLQALRRDIQFIFQDPYASLDPRQTVGDSIMEPLRVHGLLPGKAAAARVAWLLERVGLLPEHAWRYPHEFSGGQ 468 (623)
T ss_pred CcCCHHHHHHhcCCeEEEecCchhhcCCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCHHHhhCCcccCCHHH
Confidence 23599999996422333589999998865444321 222345678899998853 467788999999
Q ss_pred CCcchhhhhhccCceEEEEcCCccccCh----hhHHHHHhhccc----eEEEEcChHHHHH---HHh----hcccccCCc
Q 021362 214 GDPVEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFDE----KWFIEVDLDTAMQ---RVL----KRHISTGKP 278 (313)
Q Consensus 214 kqRv~ia~al~~~ar~Li~d~~~lllDE----~~~~~l~~l~~~----~i~vtHd~~~~~~---rv~----griv~~G~~ 278 (313)
||||+||+|++.++++|++|+|+..||. .+++.|+++.++ .||||||++++.. |++ |++++.|++
T Consensus 469 rQRv~iAraL~~~p~llllDEPts~LD~~~~~~i~~ll~~l~~~~g~tvi~isHdl~~v~~~~dri~vl~~G~iv~~g~~ 548 (623)
T PRK10261 469 RQRICIARALALNPKVIIADEAVSALDVSIRGQIINLLLDLQRDFGIAYLFISHDMAVVERISHRVAVMYLGQIVEIGPR 548 (623)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCH
Confidence 9999999999999999999999999999 455556555432 4799999999987 655 999999999
Q ss_pred hHHHH
Q 021362 279 PDVAK 283 (313)
Q Consensus 279 ~ev~~ 283 (313)
+++..
T Consensus 549 ~~i~~ 553 (623)
T PRK10261 549 RAVFE 553 (623)
T ss_pred HHHhc
Confidence 88854
|
|
| >PRK10744 pstB phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-35 Score=266.90 Aligned_cols=202 Identities=10% Similarity=0.052 Sum_probs=159.6
Q ss_pred ccEEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcc--cCCCCceeecCCCCC----
Q 021362 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINK--IWPQKASSFDSQVKP---- 148 (313)
Q Consensus 75 m~~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~--~~p~~G~i~~~g~~~---- 148 (313)
..+|+++|+++.|++.. +|+|+||+|++||+++|+||||||||||+++|+|+++. ..|++|+|.++|.+.
T Consensus 11 ~~~l~~~~l~~~~~~~~----il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i~~~g~~~~~~~ 86 (260)
T PRK10744 11 PSKIQVRNLNFYYGKFH----ALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGENILTPK 86 (260)
T ss_pred CceEEEEEEEEEeCCeE----EeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcceEEEECCEEccccc
Confidence 45799999999998755 99999999999999999999999999999999999840 014799999998653
Q ss_pred ------CCeEEEEecCCCCCCcccCCcccChHHHHHhc-CCCCCccHHHHHHHHHHhhcC------CCccCCCCCCcCCC
Q 021362 149 ------PDVATVLPMDGFHLYLSQLDAMEDPKEAHARR-GAPWTFNPLLLLNCLKNLRNQ------GSVYAPSFDHGVGD 215 (313)
Q Consensus 149 ------~~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~-~~~~~~~~~~~~~~l~~l~~~------~~~~~~~LSgG~kq 215 (313)
.+.++|++|++.. +. .|+.+|+.+....+ +.+.....+++.++++.++.. .+..+.+|||||+|
T Consensus 87 ~~~~~~~~~i~~~~q~~~~-~~--~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~q 163 (260)
T PRK10744 87 QDIALLRAKVGMVFQKPTP-FP--MSIYDNIAFGVRLFEKLSRAEMDERVEWALTKAALWNEVKDKLHQSGYSLSGGQQQ 163 (260)
T ss_pred cchHHHhcceEEEecCCcc-Cc--CcHHHHHhhhHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHhcCCCCCCHHHHH
Confidence 2359999999653 32 69999998765433 222222335677788887742 35567799999999
Q ss_pred cchhhhhhccCceEEEEcCCccccCh----hhHHHHHhhcc--ceEEEEcChHHHHH---HHh----hcccccCCchHHH
Q 021362 216 PVEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFD--EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVA 282 (313)
Q Consensus 216 Rv~ia~al~~~ar~Li~d~~~lllDE----~~~~~l~~l~~--~~i~vtHd~~~~~~---rv~----griv~~G~~~ev~ 282 (313)
|++||++++.++++|++|+|+..||. .+.+.|+++.. ..|++|||++++.. |++ |++++.|+++++.
T Consensus 164 rv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 243 (260)
T PRK10744 164 RLCIARGIAIRPEVLLLDEPCSALDPISTGRIEELITELKQDYTVVIVTHNMQQAARCSDYTAFMYLGELIEFGNTDTIF 243 (260)
T ss_pred HHHHHHHHHCCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 99999999999999999999999999 45555555533 24799999999865 555 8999999888775
Q ss_pred H
Q 021362 283 K 283 (313)
Q Consensus 283 ~ 283 (313)
.
T Consensus 244 ~ 244 (260)
T PRK10744 244 T 244 (260)
T ss_pred h
Confidence 4
|
|
| >PRK14235 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-35 Score=267.63 Aligned_cols=199 Identities=12% Similarity=0.063 Sum_probs=159.2
Q ss_pred ccEEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCC-----CCceeecCCCCC-
Q 021362 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWP-----QKASSFDSQVKP- 148 (313)
Q Consensus 75 m~~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p-----~~G~i~~~g~~~- 148 (313)
+++|+++||++.|++.. +|+|+||+|++|++++|+||||||||||+++|+|+++ | ++|+|+++|.+.
T Consensus 17 ~~~l~~~nl~~~~~~~~----il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---~~~~~~~~G~I~~~g~~i~ 89 (267)
T PRK14235 17 EIKMRARDVSVFYGEKQ----ALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMND---TIDGCRVTGKITLDGEDIY 89 (267)
T ss_pred CceEEEEeEEEEECCEE----EEEEEEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcc---cccCCCCceEEEECCEECc
Confidence 35799999999998765 9999999999999999999999999999999999996 5 899999999653
Q ss_pred ---------CCeEEEEecCCCCCCcccCCcccChHHHHHhcCCC--CCccHHHHHHHHHHhhcC------CCccCCCCCC
Q 021362 149 ---------PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAP--WTFNPLLLLNCLKNLRNQ------GSVYAPSFDH 211 (313)
Q Consensus 149 ---------~~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~--~~~~~~~~~~~l~~l~~~------~~~~~~~LSg 211 (313)
...++|++|++..+ . .|+.||+.+....++.. .....+++.++++.++.. .+..+.+|||
T Consensus 90 ~~~~~~~~~~~~i~~v~q~~~~~-~--~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSg 166 (267)
T PRK14235 90 DPRLDVVELRARVGMVFQKPNPF-P--KSIYENVAYGPRIHGLARSKAELDEIVETSLRKAGLWEEVKDRLHEPGTGLSG 166 (267)
T ss_pred ccccchHHHhhceEEEecCCCCC-C--CcHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCchhhhHHhhCCcccCCH
Confidence 23589999996533 3 49999998765433321 122245567788887752 2456779999
Q ss_pred cCCCcchhhhhhccCceEEEEcCCccccCh----hhHHHHHhhccc--eEEEEcChHHHHH---HHh----hcccccCCc
Q 021362 212 GVGDPVEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFDE--KWFIEVDLDTAMQ---RVL----KRHISTGKP 278 (313)
Q Consensus 212 G~kqRv~ia~al~~~ar~Li~d~~~lllDE----~~~~~l~~l~~~--~i~vtHd~~~~~~---rv~----griv~~G~~ 278 (313)
||+||++||++++.++++|++|+|+..||. .+.+.|+++.+. .+++|||++.+.. |++ |++++.|.+
T Consensus 167 Gq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~l~~~~tiiivtH~~~~~~~~~d~v~~l~~G~i~~~g~~ 246 (267)
T PRK14235 167 GQQQRLCIARAIAVSPEVILMDEPCSALDPIATAKVEELIDELRQNYTIVIVTHSMQQAARVSQRTAFFHLGNLVEVGDT 246 (267)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHhcCCeEEEEEcCHHHHHhhCCEEEEEECCEEEEeCCH
Confidence 999999999999999999999999999999 445555555332 4799999999876 554 899999988
Q ss_pred hHHHH
Q 021362 279 PDVAK 283 (313)
Q Consensus 279 ~ev~~ 283 (313)
+++..
T Consensus 247 ~~~~~ 251 (267)
T PRK14235 247 EKMFT 251 (267)
T ss_pred HHHHh
Confidence 77743
|
|
| >PRK10261 glutathione transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-35 Score=298.66 Aligned_cols=205 Identities=17% Similarity=0.169 Sum_probs=165.3
Q ss_pred ccEEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCC------
Q 021362 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP------ 148 (313)
Q Consensus 75 m~~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~------ 148 (313)
+++|+++||++.|+...+...+|+|+||+|++||++||+||||||||||+++|+|+++ |++|+|.++|...
T Consensus 10 ~~~l~v~~l~~~y~~~~~~~~~l~~is~~v~~Ge~~~lvG~nGsGKSTLl~~l~Gll~---p~~G~i~~~g~~~~~~~~~ 86 (623)
T PRK10261 10 RDVLAVENLNIAFMQEQQKIAAVRNLSFSLQRGETLAIVGESGSGKSVTALALMRLLE---QAGGLVQCDKMLLRRRSRQ 86 (623)
T ss_pred CceEEEeceEEEecCCCCceeEEEeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCC---CCCeEEEECCEEecccccc
Confidence 4589999999999642222349999999999999999999999999999999999999 9999999877411
Q ss_pred ----------------CCeEEEEecCCCCCCcccCCcccChHHHHHhc-CCCCCccHHHHHHHHHHhhcC-----CCccC
Q 021362 149 ----------------PDVATVLPMDGFHLYLSQLDAMEDPKEAHARR-GAPWTFNPLLLLNCLKNLRNQ-----GSVYA 206 (313)
Q Consensus 149 ----------------~~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~-~~~~~~~~~~~~~~l~~l~~~-----~~~~~ 206 (313)
...++|++|++.....+.+|+.+|+.+..... +.+.....+++.++|+.++.. .+.++
T Consensus 87 ~~~~~~~~~~~~~~~r~~~ig~v~Q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~ 166 (623)
T PRK10261 87 VIELSEQSAAQMRHVRGADMAMIFQEPMTSLNPVFTVGEQIAESIRLHQGASREEAMVEAKRMLDQVRIPEAQTILSRYP 166 (623)
T ss_pred ccccccCCHHHHHHHhCCCEEEEEeCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChhhHHhCCC
Confidence 13589999996321223589999999876542 443333456788899999863 35678
Q ss_pred CCCCCcCCCcchhhhhhccCceEEEEcCCccccCh----hhHHHHHhhccc----eEEEEcChHHHHH---HHh----hc
Q 021362 207 PSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFDE----KWFIEVDLDTAMQ---RVL----KR 271 (313)
Q Consensus 207 ~~LSgG~kqRv~ia~al~~~ar~Li~d~~~lllDE----~~~~~l~~l~~~----~i~vtHd~~~~~~---rv~----gr 271 (313)
.+|||||||||+||+|++.++++|++|+|+..||. .+++.|+++.++ .|+||||++++.. |++ |+
T Consensus 167 ~~LSgGq~QRv~iA~AL~~~P~lLllDEPt~~LD~~~~~~l~~ll~~l~~~~g~tvi~itHdl~~~~~~adri~vl~~G~ 246 (623)
T PRK10261 167 HQLSGGMRQRVMIAMALSCRPAVLIADEPTTALDVTIQAQILQLIKVLQKEMSMGVIFITHDMGVVAEIADRVLVMYQGE 246 (623)
T ss_pred ccCCHHHHHHHHHHHHHhCCCCEEEEeCCCCccCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEeeCCe
Confidence 89999999999999999999999999999999999 566666666432 4799999999877 555 99
Q ss_pred ccccCCchHHH
Q 021362 272 HISTGKPPDVA 282 (313)
Q Consensus 272 iv~~G~~~ev~ 282 (313)
+++.|++.++.
T Consensus 247 i~~~g~~~~~~ 257 (623)
T PRK10261 247 AVETGSVEQIF 257 (623)
T ss_pred ecccCCHHHhh
Confidence 99999888775
|
|
| >PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-35 Score=267.74 Aligned_cols=198 Identities=17% Similarity=0.192 Sum_probs=159.2
Q ss_pred EEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCC--------
Q 021362 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP-------- 148 (313)
Q Consensus 77 ~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~-------- 148 (313)
||+++|+++.|++.. +|+++||++++|++++|+|+||||||||+++|+|+++ |++|+|.++|.+.
T Consensus 2 ~l~~~~l~~~~~~~~----il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~---~~~G~i~~~g~~~~~~~~~~~ 74 (255)
T PRK11231 2 TLRTENLTVGYGTKR----ILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLT---PQSGTVFLGDKPISMLSSRQL 74 (255)
T ss_pred EEEEEeEEEEECCEE----EEeeeeeEEcCCcEEEEECCCCCCHHHHHHHHhCCcC---CCCcEEEECCEEhHHCCHHHH
Confidence 699999999998766 9999999999999999999999999999999999999 9999999999652
Q ss_pred CCeEEEEecCCCCCCcccCCcccChHHHHH----hcCCCCCccHHHHHHHHHHhhc--CCCccCCCCCCcCCCcchhhhh
Q 021362 149 PDVATVLPMDGFHLYLSQLDAMEDPKEAHA----RRGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDIL 222 (313)
Q Consensus 149 ~~~i~~v~qd~~~~~~~~ltv~e~~~~~~~----~~~~~~~~~~~~~~~~l~~l~~--~~~~~~~~LSgG~kqRv~ia~a 222 (313)
.+.++|++|+...+. .+|+++|+.+... .++.......+++.++++.++. ..+.++.+|||||+||++||+|
T Consensus 75 ~~~i~~~~q~~~~~~--~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~lara 152 (255)
T PRK11231 75 ARRLALLPQHHLTPE--GITVRELVAYGRSPWLSLWGRLSAEDNARVNQAMEQTRINHLADRRLTDLSGGQRQRAFLAMV 152 (255)
T ss_pred hhheEEecccCCCCC--CccHHHHHHhccchhhhhccCCCHHHHHHHHHHHHHcCCHHHHcCCcccCCHHHHHHHHHHHH
Confidence 235899999965433 4799999876421 1121122234567788888774 3466778999999999999999
Q ss_pred hccCceEEEEcCCccccCh----hhHHHHHhhccc---eEEEEcChHHHHH---HHh----hcccccCCchHHHH
Q 021362 223 VGLQHKVVIVDGNYLFLDG----GVWKDVSSMFDE---KWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAK 283 (313)
Q Consensus 223 l~~~ar~Li~d~~~lllDE----~~~~~l~~l~~~---~i~vtHd~~~~~~---rv~----griv~~G~~~ev~~ 283 (313)
++.++++|++|+|+..||. .+++.|+++.++ .+++|||++++.. |++ |+++..|+++++..
T Consensus 153 l~~~p~llllDEP~~~LD~~~~~~l~~~l~~l~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 227 (255)
T PRK11231 153 LAQDTPVVLLDEPTTYLDINHQVELMRLMRELNTQGKTVVTVLHDLNQASRYCDHLVVLANGHVMAQGTPEEVMT 227 (255)
T ss_pred HhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHhcCEEEEEECCeEEEEcCHHHhcC
Confidence 9999999999999999999 445555554332 4799999999876 554 89888888877744
|
|
| >PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-35 Score=268.50 Aligned_cols=188 Identities=14% Similarity=0.126 Sum_probs=153.7
Q ss_pred cEEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCC---CCeE
Q 021362 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP---PDVA 152 (313)
Q Consensus 76 ~~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~---~~~i 152 (313)
++|+++|+++.|++.. +|+++||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|.+. .+.+
T Consensus 11 ~~l~i~~l~~~~~~~~----il~~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~---p~~G~i~~~g~~~~~~~~~i 83 (257)
T PRK11247 11 TPLLLNAVSKRYGERT----VLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLET---PSAGELLAGTAPLAEAREDT 83 (257)
T ss_pred CcEEEEEEEEEECCcc----eeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC---CCCeEEEECCEEHHHhhCce
Confidence 4699999999998766 9999999999999999999999999999999999999 9999999988652 3569
Q ss_pred EEEecCCCCCCcccCCcccChHHHHHhcCCCCCccHHHHHHHHHHhhcC--CCccCCCCCCcCCCcchhhhhhccCceEE
Q 021362 153 TVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGLQHKVV 230 (313)
Q Consensus 153 ~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~~~~~LSgG~kqRv~ia~al~~~ar~L 230 (313)
+|++|++..+. .+|+.||+.+... . ...+++.++++.++.. .+.++.+||||||||++||++++.++++|
T Consensus 84 ~~v~q~~~l~~--~~tv~enl~~~~~--~----~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqkqrl~laraL~~~p~ll 155 (257)
T PRK11247 84 RLMFQDARLLP--WKKVIDNVGLGLK--G----QWRDAALQALAAVGLADRANEWPAALSGGQKQRVALARALIHRPGLL 155 (257)
T ss_pred EEEecCccCCC--CCcHHHHHHhccc--c----hHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEE
Confidence 99999965443 4799999876421 1 1245677888888743 35677799999999999999999999999
Q ss_pred EEcCCccccCh----hhHHHHHhhcc----ceEEEEcChHHHHH---HHh----hcccccCCc
Q 021362 231 IVDGNYLFLDG----GVWKDVSSMFD----EKWFIEVDLDTAMQ---RVL----KRHISTGKP 278 (313)
Q Consensus 231 i~d~~~lllDE----~~~~~l~~l~~----~~i~vtHd~~~~~~---rv~----griv~~G~~ 278 (313)
++|+|+..||. .+.+.|.++.+ ..+++|||++++.. |++ |++++.|+.
T Consensus 156 lLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tviivsHd~~~~~~~~d~i~~l~~G~i~~~~~~ 218 (257)
T PRK11247 156 LLDEPLGALDALTRIEMQDLIESLWQQHGFTVLLVTHDVSEAVAMADRVLLIEEGKIGLDLTV 218 (257)
T ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeeccc
Confidence 99999999999 44555555532 24799999998765 554 788776654
|
|
| >PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-35 Score=271.11 Aligned_cols=202 Identities=13% Similarity=0.067 Sum_probs=159.5
Q ss_pred EEEEccceEEcccccc-ccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCCC------
Q 021362 77 VVEARCMDEVYDALAQ-RLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPP------ 149 (313)
Q Consensus 77 ~l~~~~l~~~y~~~~~-~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~~------ 149 (313)
.|+++|+++.|++... ...+|+|+||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|.+..
T Consensus 2 ~l~~~~l~~~~~~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~---p~~G~i~~~g~~i~~~~~~~ 78 (280)
T PRK13649 2 GINLQNVSYTYQAGTPFEGRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHV---PTQGSVRVDDTLITSTSKNK 78 (280)
T ss_pred eEEEEEEEEEcCCCCccccceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC---CCceEEEECCEEcccccccc
Confidence 4899999999975210 1238999999999999999999999999999999999999 99999999986531
Q ss_pred ------CeEEEEecCCC-CCCcccCCcccChHHHHHhcCCCCCccHHHHHHHHHHhhcC---CCccCCCCCCcCCCcchh
Q 021362 150 ------DVATVLPMDGF-HLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ---GSVYAPSFDHGVGDPVED 219 (313)
Q Consensus 150 ------~~i~~v~qd~~-~~~~~~ltv~e~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~---~~~~~~~LSgG~kqRv~i 219 (313)
+.++|++|++. .++. .|+.+|+.+.....+.......+++.++++.++.. .++++.+||||||||++|
T Consensus 79 ~~~~~~~~i~~~~q~~~~~~~~--~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~l 156 (280)
T PRK13649 79 DIKQIRKKVGLVFQFPESQLFE--ETVLKDVAFGPQNFGVSQEEAEALAREKLALVGISESLFEKNPFELSGGQMRRVAI 156 (280)
T ss_pred CHHHHHhheEEEeeChhhhhcc--ccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHHH
Confidence 35899999952 2332 59999998765444332222334567788888753 356777999999999999
Q ss_pred hhhhccCceEEEEcCCccccCh----hhHHHHHhhcc---ceEEEEcChHHHHH---HHh----hcccccCCchHHHH
Q 021362 220 DILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFD---EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAK 283 (313)
Q Consensus 220 a~al~~~ar~Li~d~~~lllDE----~~~~~l~~l~~---~~i~vtHd~~~~~~---rv~----griv~~G~~~ev~~ 283 (313)
|++++.++++|++|+|+..||. .+++.|.++.+ .+|++|||++++.. |++ |++++.|+++++..
T Consensus 157 a~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 234 (280)
T PRK13649 157 AGILAMEPKILVLDEPTAGLDPKGRKELMTLFKKLHQSGMTIVLVTHLMDDVANYADFVYVLEKGKLVLSGKPKDIFQ 234 (280)
T ss_pred HHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 9999999999999999999999 45555555543 24699999998866 554 89988999888754
|
|
| >PRK14274 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-35 Score=266.71 Aligned_cols=202 Identities=11% Similarity=0.064 Sum_probs=158.9
Q ss_pred ccEEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhc--ccCCCCceeecCCCCCC---
Q 021362 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN--KIWPQKASSFDSQVKPP--- 149 (313)
Q Consensus 75 m~~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~--~~~p~~G~i~~~g~~~~--- 149 (313)
+++|+++|+++.|++.. +|+++||+|++||+++|+||||||||||+++|+|+++ ..+|++|+|.++|.+..
T Consensus 10 ~~~l~i~~l~~~~~~~~----~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G~i~~~g~~~~~~~ 85 (259)
T PRK14274 10 QEVYQINGMNLWYGQHH----ALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKGK 85 (259)
T ss_pred CceEEEeeEEEEECCee----eEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceEEEECCEEccccc
Confidence 35899999999998765 9999999999999999999999999999999999986 11126999999986531
Q ss_pred -------CeEEEEecCCCCCCcccCCcccChHHHHHhcCCCC-CccHHHHHHHHHHhhcC------CCccCCCCCCcCCC
Q 021362 150 -------DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPW-TFNPLLLLNCLKNLRNQ------GSVYAPSFDHGVGD 215 (313)
Q Consensus 150 -------~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~~-~~~~~~~~~~l~~l~~~------~~~~~~~LSgG~kq 215 (313)
..++|++|++..+ . .|++||+.+.....+... ....+++.++++.++.. .+..+.+|||||+|
T Consensus 86 ~~~~~~~~~i~~v~q~~~~~-~--~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~~~~~LS~Gq~q 162 (259)
T PRK14274 86 VDLVELRKNIGMVFQKGNPF-P--QSIFDNVAYGPRIHGTKNKKKLQEIVEKSLKDVALWDEVKDRLHTQALSLSGGQQQ 162 (259)
T ss_pred cCHHHHhhceEEEecCCccc-c--cCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhhhhhCCcccCCHHHHH
Confidence 3489999996543 3 499999987654433221 12234566777777642 35567799999999
Q ss_pred cchhhhhhccCceEEEEcCCccccCh----hhHHHHHhhcc--ceEEEEcChHHHHH---HHh----hcccccCCchHHH
Q 021362 216 PVEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFD--EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVA 282 (313)
Q Consensus 216 Rv~ia~al~~~ar~Li~d~~~lllDE----~~~~~l~~l~~--~~i~vtHd~~~~~~---rv~----griv~~G~~~ev~ 282 (313)
|++||++++.++++|++|+|+..||. .+++.|.++.. ..+++|||++.+.. |++ |++++.|+++++.
T Consensus 163 rv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 242 (259)
T PRK14274 163 RLCIARALATNPDVLLMDEPTSALDPVSTRKIEELILKLKEKYTIVIVTHNMQQAARVSDQTAFFYMGELVECNDTNKMF 242 (259)
T ss_pred HHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhcCCEEEEEEcCHHHHHHhCCEEEEEECCEEEEECCHHHHh
Confidence 99999999999999999999999999 45555555533 24799999998876 554 8999999988875
Q ss_pred H
Q 021362 283 K 283 (313)
Q Consensus 283 ~ 283 (313)
.
T Consensus 243 ~ 243 (259)
T PRK14274 243 S 243 (259)
T ss_pred h
Confidence 4
|
|
| >TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-35 Score=268.17 Aligned_cols=197 Identities=16% Similarity=0.156 Sum_probs=158.4
Q ss_pred EEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCC---------
Q 021362 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP--------- 148 (313)
Q Consensus 78 l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~--------- 148 (313)
|+++||++.|++.. +|+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.+.
T Consensus 1 i~~~~l~~~~~~~~----~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~i~~~~~~~~~ 73 (252)
T TIGR03005 1 VRFSDVTKRFGILT----VLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEP---IDEGQIQVEGEQLYHMPGRNGP 73 (252)
T ss_pred CEEEEEEEEeCCee----EEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCceEEEECCEEcccccccccc
Confidence 47899999998765 9999999999999999999999999999999999999 9999999998643
Q ss_pred ------------CCeEEEEecCCCCCCcccCCcccChHHHHH-hcCCCCCccHHHHHHHHHHhhc--CCCccCCCCCCcC
Q 021362 149 ------------PDVATVLPMDGFHLYLSQLDAMEDPKEAHA-RRGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGV 213 (313)
Q Consensus 149 ------------~~~i~~v~qd~~~~~~~~ltv~e~~~~~~~-~~~~~~~~~~~~~~~~l~~l~~--~~~~~~~~LSgG~ 213 (313)
.+.++|++|++..++ .+|+.+|+.+... ..+.......+.+.++++.++. ..+..+.+|||||
T Consensus 74 ~~~~~~~~~~~~~~~i~~v~q~~~~~~--~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~ 151 (252)
T TIGR03005 74 LVPADEKHLRQMRNKIGMVFQSFNLFP--HKTVLDNVTEAPVLVLGMARAEAEKRAMELLDMVGLADKADHMPAQLSGGQ 151 (252)
T ss_pred ccccchhHHHHHhhCeEEEecCcccCC--CCcHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhHhhcChhhcCHHH
Confidence 235899999965443 4799999987532 2222222234556788888874 3355677999999
Q ss_pred CCcchhhhhhccCceEEEEcCCccccCh----hhHHHHHhhcc----ceEEEEcChHHHHH---HHh----hcccccCCc
Q 021362 214 GDPVEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFD----EKWFIEVDLDTAMQ---RVL----KRHISTGKP 278 (313)
Q Consensus 214 kqRv~ia~al~~~ar~Li~d~~~lllDE----~~~~~l~~l~~----~~i~vtHd~~~~~~---rv~----griv~~G~~ 278 (313)
+||++||++++.++++|++|+|+..||. .+++.|+++.+ ..|++|||++++.. |++ |++++.|++
T Consensus 152 ~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~g~~ 231 (252)
T TIGR03005 152 QQRVAIARALAMRPKVMLFDEVTSALDPELVGEVLNVIRRLASEHDLTMLLVTHEMGFAREFADRVCFFDKGRIVEQGKP 231 (252)
T ss_pred HHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCH
Confidence 9999999999999999999999999998 45556666543 24799999999865 554 999998988
Q ss_pred hHHHH
Q 021362 279 PDVAK 283 (313)
Q Consensus 279 ~ev~~ 283 (313)
+++..
T Consensus 232 ~~~~~ 236 (252)
T TIGR03005 232 DEIFR 236 (252)
T ss_pred HHHhc
Confidence 77753
|
Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins. |
| >PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-35 Score=269.98 Aligned_cols=199 Identities=16% Similarity=0.173 Sum_probs=160.2
Q ss_pred cEEEEccceEEcc--ccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCC-----
Q 021362 76 PVVEARCMDEVYD--ALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP----- 148 (313)
Q Consensus 76 ~~l~~~~l~~~y~--~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~----- 148 (313)
++|+++|+++.|+ +.. +|+++||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.+.
T Consensus 6 ~~l~~~nl~~~~~~~~~~----il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~---p~~G~I~~~g~~i~~~~~ 78 (271)
T PRK13632 6 VMIKVENVSFSYPNSENN----ALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLK---PQSGEIKIDGITISKENL 78 (271)
T ss_pred eEEEEEeEEEEcCCCCcc----ceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC---CCCceEEECCEecCcCCH
Confidence 4799999999996 334 9999999999999999999999999999999999999 9999999999653
Q ss_pred ---CCeEEEEecCCC-CCCcccCCcccChHHHHHhcCCCCCccHHHHHHHHHHhhc--CCCccCCCCCCcCCCcchhhhh
Q 021362 149 ---PDVATVLPMDGF-HLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDIL 222 (313)
Q Consensus 149 ---~~~i~~v~qd~~-~~~~~~ltv~e~~~~~~~~~~~~~~~~~~~~~~~l~~l~~--~~~~~~~~LSgG~kqRv~ia~a 222 (313)
.+.++|++|++. .++ .+|+.||+.+.....+........++.++++.++. ..+..+.+|||||+||++||+|
T Consensus 79 ~~~~~~i~~v~q~~~~~~~--~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~lara 156 (271)
T PRK13632 79 KEIRKKIGIIFQNPDNQFI--GATVEDDIAFGLENKKVPPKKMKDIIDDLAKKVGMEDYLDKEPQNLSGGQKQRVAIASV 156 (271)
T ss_pred HHHhcceEEEEeCHHHhcC--cccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCCcccCCHHHHHHHHHHHH
Confidence 235899999963 233 37999999876543333222234457788888874 3566778999999999999999
Q ss_pred hccCceEEEEcCCccccCh----hhHHHHHhhcc----ceEEEEcChHHHHH--HHh----hcccccCCchHHHH
Q 021362 223 VGLQHKVVIVDGNYLFLDG----GVWKDVSSMFD----EKWFIEVDLDTAMQ--RVL----KRHISTGKPPDVAK 283 (313)
Q Consensus 223 l~~~ar~Li~d~~~lllDE----~~~~~l~~l~~----~~i~vtHd~~~~~~--rv~----griv~~G~~~ev~~ 283 (313)
++.++++|++|+|+..||. .+++.|+++.+ ..+++|||++++.. +++ |+++..|+++++..
T Consensus 157 l~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 231 (271)
T PRK13632 157 LALNPEIIIFDESTSMLDPKGKREIKKIMVDLRKTRKKTLISITHDMDEAILADKVIVFSEGKLIAQGKPKEILN 231 (271)
T ss_pred HHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEEechhHHhhCCEEEEEECCEEEEecCHHHHhc
Confidence 9999999999999999999 55666666542 24699999998754 444 88888888877643
|
|
| >PRK14270 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-35 Score=265.05 Aligned_cols=198 Identities=13% Similarity=0.065 Sum_probs=159.5
Q ss_pred cEEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCC-----CCceeecCCCCC--
Q 021362 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWP-----QKASSFDSQVKP-- 148 (313)
Q Consensus 76 ~~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p-----~~G~i~~~g~~~-- 148 (313)
++|+++|+++.|++.. +|+|+||+|++||+++|+|+||||||||+++|+|+.+ | ++|+|.++|.+.
T Consensus 3 ~~l~~~~l~~~~~~~~----~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~---~~~~~~~~G~i~~~g~~i~~ 75 (251)
T PRK14270 3 IKMESKNLNLWYGEKQ----ALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMND---LISNVKIEGEVLLDGKNIYD 75 (251)
T ss_pred cEEEEEEeEEEECCee----eeeceeEEEcCCCEEEEECCCCCCHHHHHHHHHhccC---cccCCCCccEEEECCEeccc
Confidence 4799999999998765 9999999999999999999999999999999999986 5 799999998653
Q ss_pred --------CCeEEEEecCCCCCCcccCCcccChHHHHHhcCCC-CCccHHHHHHHHHHhhcC------CCccCCCCCCcC
Q 021362 149 --------PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAP-WTFNPLLLLNCLKNLRNQ------GSVYAPSFDHGV 213 (313)
Q Consensus 149 --------~~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~-~~~~~~~~~~~l~~l~~~------~~~~~~~LSgG~ 213 (313)
...++|++|++.. +. +|+.+|+.+.....+.. ......++.++++.++.. .+.++.+||+||
T Consensus 76 ~~~~~~~~~~~i~~~~q~~~~-~~--~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~ 152 (251)
T PRK14270 76 KDVDVVELRKRVGMVFQKPNP-FP--MSIYDNVAYGPRIHGIKDKKELDKIVEWALKKAALWDEVKDDLKKSALKLSGGQ 152 (251)
T ss_pred ccccHHHHHhheEEEecCCCc-CC--CcHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCchhhhhHhhCCcccCCHHH
Confidence 2348999999653 32 79999998765444331 122234566777777632 355677999999
Q ss_pred CCcchhhhhhccCceEEEEcCCccccCh----hhHHHHHhhccc--eEEEEcChHHHHH---HHh----hcccccCCchH
Q 021362 214 GDPVEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFDE--KWFIEVDLDTAMQ---RVL----KRHISTGKPPD 280 (313)
Q Consensus 214 kqRv~ia~al~~~ar~Li~d~~~lllDE----~~~~~l~~l~~~--~i~vtHd~~~~~~---rv~----griv~~G~~~e 280 (313)
+||++||++++.++++|++|+|+..||. .+++.|+++.+. .+++|||++++.. |++ |++++.|++++
T Consensus 153 ~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~~~tiiivsH~~~~~~~~~d~v~~l~~G~i~~~~~~~~ 232 (251)
T PRK14270 153 QQRLCIARTIAVKPDVILMDEPTSALDPISTLKIEDLMVELKKEYTIVIVTHNMQQASRVSDYTAFFLMGDLIEFNKTEK 232 (251)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCeEEEEEcCHHHHHHhcCEEEEEECCeEEEeCCHHH
Confidence 9999999999999999999999999999 455555555432 4799999998876 554 89999999888
Q ss_pred HHH
Q 021362 281 VAK 283 (313)
Q Consensus 281 v~~ 283 (313)
+..
T Consensus 233 ~~~ 235 (251)
T PRK14270 233 IFL 235 (251)
T ss_pred Hhc
Confidence 754
|
|
| >PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-35 Score=264.72 Aligned_cols=197 Identities=13% Similarity=0.134 Sum_probs=159.1
Q ss_pred EEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCC----CCceeecCCCCC----
Q 021362 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWP----QKASSFDSQVKP---- 148 (313)
Q Consensus 77 ~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p----~~G~i~~~g~~~---- 148 (313)
+|+++|+++.| +.. +|+|+||+|++||+++|+||||||||||+++|+|+++ | ++|+|.++|.+.
T Consensus 4 ~l~~~~l~~~~-~~~----il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~---~~~~~~~G~i~~~g~~i~~~~ 75 (254)
T PRK10418 4 QIELRNIALQA-AQP----LVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILP---AGVRQTAGRVLLDGKPVAPCA 75 (254)
T ss_pred EEEEeCeEEEe-ccc----eecceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCCCcCCEEEECCeeccccc
Confidence 69999999999 444 8999999999999999999999999999999999998 8 999999999753
Q ss_pred --CCeEEEEecCCCCCCcccCCcccChHHHHHhcCCCCCccHHHHHHHHHHhhcCC-----CccCCCCCCcCCCcchhhh
Q 021362 149 --PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQG-----SVYAPSFDHGVGDPVEDDI 221 (313)
Q Consensus 149 --~~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~-----~~~~~~LSgG~kqRv~ia~ 221 (313)
.+.++|++|++...+.+.+++.+++.+.....+.. ...+++.++++.++... +..+.+|||||+||++||+
T Consensus 76 ~~~~~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~~l~~~~~~~~~~~~~LS~Gq~qrv~lar 153 (254)
T PRK10418 76 LRGRKIATIMQNPRSAFNPLHTMHTHARETCLALGKP--ADDATLTAALEAVGLENAARVLKLYPFEMSGGMLQRMMIAL 153 (254)
T ss_pred cccceEEEEecCCccccCccccHHHHHHHHHHHcCCC--hHHHHHHHHHHHcCCCChhhhhhcCCcccCHHHHHHHHHHH
Confidence 24599999996432333467878876654333322 23466788888888543 5677899999999999999
Q ss_pred hhccCceEEEEcCCccccCh----hhHHHHHhhcc----ceEEEEcChHHHHH---HHh----hcccccCCchHHHH
Q 021362 222 LVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFD----EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAK 283 (313)
Q Consensus 222 al~~~ar~Li~d~~~lllDE----~~~~~l~~l~~----~~i~vtHd~~~~~~---rv~----griv~~G~~~ev~~ 283 (313)
+++.++++|++|+|+..||. .+++.|+++.+ ..+++||+++++.. |++ |+++..|+++++..
T Consensus 154 al~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~~~~~g~til~~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~ 230 (254)
T PRK10418 154 ALLCEAPFIIADEPTTDLDVVAQARILDLLESIVQKRALGMLLVTHDMGVVARLADDVAVMSHGRIVEQGDVETLFN 230 (254)
T ss_pred HHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhCCEEEEEECCEEEEecCHHHHhh
Confidence 99999999999999999998 45666666643 24699999999875 554 89999998887743
|
|
| >cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-35 Score=259.63 Aligned_cols=179 Identities=13% Similarity=0.120 Sum_probs=144.9
Q ss_pred EEccceEEccc--cccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCCC-------
Q 021362 79 EARCMDEVYDA--LAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPP------- 149 (313)
Q Consensus 79 ~~~~l~~~y~~--~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~~------- 149 (313)
+++|+++.|++ .. +|+++||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|.+..
T Consensus 1 ~~~~l~~~~~~~~~~----il~~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~~~~~~~~~~ 73 (211)
T cd03225 1 ELKNLSFSYPDGARP----ALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLG---PTSGEVLVDGKDLTKLSLKEL 73 (211)
T ss_pred CceeEEEecCCCCee----eecceEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCC---CCCceEEECCEEcccCCHHHH
Confidence 36899999986 55 9999999999999999999999999999999999999 99999999986532
Q ss_pred -CeEEEEecCCCC-CCcccCCcccChHHHHHhcCCCCCccHHHHHHHHHHhhcC--CCccCCCCCCcCCCcchhhhhhcc
Q 021362 150 -DVATVLPMDGFH-LYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGL 225 (313)
Q Consensus 150 -~~i~~v~qd~~~-~~~~~ltv~e~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~~~~~LSgG~kqRv~ia~al~~ 225 (313)
+.++|++|++.. ++ .+|+.+|+.+.....+........++.++++.++.. .++++.+|||||+||++||+|++.
T Consensus 74 ~~~i~~~~q~~~~~~~--~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~ 151 (211)
T cd03225 74 RRKVGLVFQNPDDQFF--GPTVEEEVAFGLENLGLPEEEIEERVEEALELVGLEGLRDRSPFTLSGGQKQRVAIAGVLAM 151 (211)
T ss_pred HhhceEEecChhhhcC--CCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHhc
Confidence 358999999632 33 379999998765433322222345677788888743 456778999999999999999999
Q ss_pred CceEEEEcCCccccCh----hhHHHHHhhcc---ceEEEEcChHHHHH
Q 021362 226 QHKVVIVDGNYLFLDG----GVWKDVSSMFD---EKWFIEVDLDTAMQ 266 (313)
Q Consensus 226 ~ar~Li~d~~~lllDE----~~~~~l~~l~~---~~i~vtHd~~~~~~ 266 (313)
++++|++|+|+..||. .+++.|.++.+ ..+++|||++++..
T Consensus 152 ~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tvi~~sH~~~~~~~ 199 (211)
T cd03225 152 DPDILLLDEPTAGLDPAGRRELLELLKKLKAEGKTIIIVTHDLDLLLE 199 (211)
T ss_pred CCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHH
Confidence 9999999999999999 45566666544 24799999998764
|
The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. |
| >COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-35 Score=253.78 Aligned_cols=200 Identities=17% Similarity=0.181 Sum_probs=167.9
Q ss_pred EEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCCC-------
Q 021362 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPP------- 149 (313)
Q Consensus 77 ~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~~------- 149 (313)
||+++|++++..++. +|+++||++.+||+++|+||||||||||+|.|+|.+. |++|++.++|.+..
T Consensus 1 mi~a~nls~~~~Gr~----ll~~vsl~~~pGev~ailGPNGAGKSTlLk~LsGel~---p~~G~v~~~g~~l~~~~~~~l 73 (259)
T COG4559 1 MIRAENLSYSLAGRR----LLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELS---PDSGEVTLNGVPLNSWPPEEL 73 (259)
T ss_pred CeeeeeeEEEeecce----eccCcceeccCCcEEEEECCCCccHHHHHHHhhCccC---CCCCeEeeCCcChhhCCHHHH
Confidence 589999999999988 9999999999999999999999999999999999999 99999999998743
Q ss_pred -CeEEEEecCCCCCCcccCCcccChHHHHHhcCCCCC--ccHHHHHHHHHHhh--cCCCccCCCCCCcCCCcchhhhhhc
Q 021362 150 -DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWT--FNPLLLLNCLKNLR--NQGSVYAPSFDHGVGDPVEDDILVG 224 (313)
Q Consensus 150 -~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~~~--~~~~~~~~~l~~l~--~~~~~~~~~LSgG~kqRv~ia~al~ 224 (313)
+.-++++|+...-++ +||+|-+.++..-++...+ ++...+.++|...+ ....+.+.+|||||||||.+|+.++
T Consensus 74 A~~raVlpQ~s~laFp--Ftv~eVV~mGr~p~~~g~~~~e~~~i~~~ala~~d~~~la~R~y~~LSGGEqQRVqlARvLa 151 (259)
T COG4559 74 ARHRAVLPQNSSLAFP--FTVQEVVQMGRIPHRSGREPEEDERIAAQALAATDLSGLAGRDYRTLSGGEQQRVQLARVLA 151 (259)
T ss_pred HHHhhhcccCcccccc--eEHHHHHHhcccccccCCCchhhHHHHHHHHHHcChhhhhccchhhcCchHHHHHHHHHHHH
Confidence 235789999665554 7999999988655543333 45555788888887 4567788999999999999999987
Q ss_pred c------CceEEEEcCCccccCh----hhHHHHHhhccce---EEEEcChHHHHH---HHh----hcccccCCchHHHHH
Q 021362 225 L------QHKVVIVDGNYLFLDG----GVWKDVSSMFDEK---WFIEVDLDTAMQ---RVL----KRHISTGKPPDVAKW 284 (313)
Q Consensus 225 ~------~ar~Li~d~~~lllDE----~~~~~l~~l~~~~---i~vtHd~~~~~~---rv~----griv~~G~~~ev~~~ 284 (313)
. ..|+|++|+|+.-||- ..++..+++.+++ +.|-||++.+.. |++ ||+++.|+|++++..
T Consensus 152 Ql~~~v~~~r~L~LDEPtsaLDi~HQ~~tl~laR~la~~g~~V~~VLHDLNLAA~YaDrivll~~Grv~a~g~p~~vlt~ 231 (259)
T COG4559 152 QLWPPVPSGRWLFLDEPTSALDIAHQHHTLRLARQLAREGGAVLAVLHDLNLAAQYADRIVLLHQGRVIASGSPQDVLTD 231 (259)
T ss_pred HccCCCCCCceEEecCCccccchHHHHHHHHHHHHHHhcCCcEEEEEccchHHHHhhheeeeeeCCeEeecCCHHHhcCH
Confidence 5 4468888888888888 6677777887763 699999999988 776 999999999998754
Q ss_pred H
Q 021362 285 R 285 (313)
Q Consensus 285 ~ 285 (313)
.
T Consensus 232 E 232 (259)
T COG4559 232 E 232 (259)
T ss_pred H
Confidence 3
|
|
| >PRK11144 modC molybdate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-35 Score=278.95 Aligned_cols=190 Identities=15% Similarity=0.115 Sum_probs=157.1
Q ss_pred EEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCC--------
Q 021362 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP-------- 148 (313)
Q Consensus 77 ~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~-------- 148 (313)
||++ ||+|.|++.. + |+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.+.
T Consensus 1 ~l~~-~l~k~~~~~~-----~-~vsl~i~~Ge~~~l~G~nGsGKSTLl~~iaGl~~---p~~G~I~~~g~~~~~~~~~~~ 70 (352)
T PRK11144 1 MLEL-NFKQQLGDLC-----L-TVNLTLPAQGITAIFGRSGAGKTSLINAISGLTR---PQKGRIVLNGRVLFDAEKGIC 70 (352)
T ss_pred CeEE-EEEEEeCCEE-----E-EEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCceEEEECCEEccccccccc
Confidence 4788 9999998643 3 8999999999999999999999999999999999 9999999998542
Q ss_pred ----CCeEEEEecCCCCCCcccCCcccChHHHHHhcCCCCCccHHHHHHHHHHhhcC--CCccCCCCCCcCCCcchhhhh
Q 021362 149 ----PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDIL 222 (313)
Q Consensus 149 ----~~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~~~~~LSgG~kqRv~ia~a 222 (313)
.+.++|++|+...++ .+|+.+|+.+... ....+++.++++.++.. .++++.+||||||||++||++
T Consensus 71 ~~~~~~~i~~v~q~~~l~~--~~tv~enl~~~~~------~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qRvalara 142 (352)
T PRK11144 71 LPPEKRRIGYVFQDARLFP--HYKVRGNLRYGMA------KSMVAQFDKIVALLGIEPLLDRYPGSLSGGEKQRVAIGRA 142 (352)
T ss_pred cchhhCCEEEEcCCcccCC--CCcHHHHHHhhhh------hhhHHHHHHHHHHcCCchhhhCCcccCCHHHHHHHHHHHH
Confidence 245899999965443 5899999987542 12345678889988843 466778999999999999999
Q ss_pred hccCceEEEEcCCccccCh----hhHHHHHhhccc----eEEEEcChHHHHH---HHh----hcccccCCchHHHHH
Q 021362 223 VGLQHKVVIVDGNYLFLDG----GVWKDVSSMFDE----KWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAKW 284 (313)
Q Consensus 223 l~~~ar~Li~d~~~lllDE----~~~~~l~~l~~~----~i~vtHd~~~~~~---rv~----griv~~G~~~ev~~~ 284 (313)
++.++++|++|+|+..||. .+++.|+++.++ .++||||++++.. |++ |+++..|+++++...
T Consensus 143 L~~~p~llLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tii~vTHd~~~~~~~~d~i~~l~~G~i~~~g~~~~i~~~ 219 (352)
T PRK11144 143 LLTAPELLLMDEPLASLDLPRKRELLPYLERLAREINIPILYVSHSLDEILRLADRVVVLEQGKVKAFGPLEEVWAS 219 (352)
T ss_pred HHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHHhCCEEEEEeCCEEEEecCHHHHHhC
Confidence 9999999999999999999 455566665432 4799999999876 555 999999999888653
|
|
| >PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-35 Score=266.08 Aligned_cols=197 Identities=16% Similarity=0.151 Sum_probs=158.4
Q ss_pred EEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCCC-------
Q 021362 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPP------- 149 (313)
Q Consensus 77 ~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~~------- 149 (313)
+|+++|+++.|++.. +|+++||++++|++++|+||||||||||+++|+|+++ |++|+|.++|.+..
T Consensus 5 ~l~~~~l~~~~~~~~----~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~---~~~G~i~~~g~~~~~~~~~~~ 77 (255)
T PRK11300 5 LLSVSGLMMRFGGLL----AVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYK---PTGGTILLRGQHIEGLPGHQI 77 (255)
T ss_pred eEEEeeEEEEECCEE----EEEeeeeEEcCCeEEEEECCCCCCHHHHHHHHhCCcC---CCcceEEECCEECCCCCHHHH
Confidence 799999999998766 9999999999999999999999999999999999999 99999999996532
Q ss_pred --CeEEEEecCCCCCCcccCCcccChHHHHHh----------cCCC---C--CccHHHHHHHHHHhhc--CCCccCCCCC
Q 021362 150 --DVATVLPMDGFHLYLSQLDAMEDPKEAHAR----------RGAP---W--TFNPLLLLNCLKNLRN--QGSVYAPSFD 210 (313)
Q Consensus 150 --~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~----------~~~~---~--~~~~~~~~~~l~~l~~--~~~~~~~~LS 210 (313)
..++|++|++..++ .+|+.+|+.+.... .+.+ . ......+.++++.++. ..+.++.+||
T Consensus 78 ~~~~i~~~~q~~~~~~--~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS 155 (255)
T PRK11300 78 ARMGVVRTFQHVRLFR--EMTVIENLLVAQHQQLKTGLFSGLLKTPAFRRAESEALDRAATWLERVGLLEHANRQAGNLA 155 (255)
T ss_pred HhcCeEEeccCcccCC--CCcHHHHHHHhhhccccchhhhhhccccccccchhHHHHHHHHHHHhCChhhhhhCChhhCC
Confidence 23788999965443 48999999875321 1100 0 1122456777888774 3466778999
Q ss_pred CcCCCcchhhhhhccCceEEEEcCCccccCh----hhHHHHHhhccc----eEEEEcChHHHHH---HHh----hccccc
Q 021362 211 HGVGDPVEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFDE----KWFIEVDLDTAMQ---RVL----KRHIST 275 (313)
Q Consensus 211 gG~kqRv~ia~al~~~ar~Li~d~~~lllDE----~~~~~l~~l~~~----~i~vtHd~~~~~~---rv~----griv~~ 275 (313)
|||+||++||++++.++++|++|+|+..||. .+++.|.++.++ .|++|||++++.. +++ |+++..
T Consensus 156 ~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~~ 235 (255)
T PRK11300 156 YGQQRRLEIARCMVTQPEILMLDEPAAGLNPKETKELDELIAELRNEHNVTVLLIEHDMKLVMGISDRIYVVNQGTPLAN 235 (255)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHHHHHHhCCEEEEEECCeEEec
Confidence 9999999999999999999999999999999 455666655432 4799999999876 554 899988
Q ss_pred CCchHHH
Q 021362 276 GKPPDVA 282 (313)
Q Consensus 276 G~~~ev~ 282 (313)
|+++++.
T Consensus 236 ~~~~~~~ 242 (255)
T PRK11300 236 GTPEEIR 242 (255)
T ss_pred CCHHHHh
Confidence 9887764
|
|
| >PRK14262 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-35 Score=263.79 Aligned_cols=199 Identities=12% Similarity=0.141 Sum_probs=158.7
Q ss_pred ccEEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCC-----CCceeecCCCCC-
Q 021362 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWP-----QKASSFDSQVKP- 148 (313)
Q Consensus 75 m~~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p-----~~G~i~~~g~~~- 148 (313)
|++|+++|+++.|++.. +|+++||+|++||+++|+||||||||||+++|+|+++ | ++|+|.++|.+.
T Consensus 1 ~~~l~~~~l~~~~~~~~----~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~---~~~~~~~~G~i~i~g~~~~ 73 (250)
T PRK14262 1 EPIIEIENFSAYYGEKK----AVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMND---HIPGFRVEGKIYFKGQDIY 73 (250)
T ss_pred CceEEEEeeEEEeCCce----eEeeeeEeecCCCEEEEECCCCCCHHHHHHHHhcccc---CCCCCCcceEEEECCEEcc
Confidence 45899999999998665 9999999999999999999999999999999999986 5 899999998653
Q ss_pred ---------CCeEEEEecCCCCCCcccCCcccChHHHHHhcCCCC-CccHHHHHHHHHHhhcC------CCccCCCCCCc
Q 021362 149 ---------PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPW-TFNPLLLLNCLKNLRNQ------GSVYAPSFDHG 212 (313)
Q Consensus 149 ---------~~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~~-~~~~~~~~~~l~~l~~~------~~~~~~~LSgG 212 (313)
...++|++|++.. +. +|+.+|+.+.....+... ....+.+.++++.++.. .+..+.+||||
T Consensus 74 ~~~~~~~~~~~~i~~~~q~~~~-~~--~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G 150 (250)
T PRK14262 74 DPQLDVTEYRKKVGMVFQKPTP-FP--MSIYDNVAFGPRIHGVKSKHKLDRIVEESLKKAALWDEVKSELNKPGTRLSGG 150 (250)
T ss_pred cchhhHHHhhhhEEEEecCCcc-Cc--ccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCchhHHHHhCChhhcCHH
Confidence 2359999999653 32 699999987654333221 12334466777777642 35567799999
Q ss_pred CCCcchhhhhhccCceEEEEcCCccccCh----hhHHHHHhhcc--ceEEEEcChHHHHH---HHh----hcccccCCch
Q 021362 213 VGDPVEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFD--EKWFIEVDLDTAMQ---RVL----KRHISTGKPP 279 (313)
Q Consensus 213 ~kqRv~ia~al~~~ar~Li~d~~~lllDE----~~~~~l~~l~~--~~i~vtHd~~~~~~---rv~----griv~~G~~~ 279 (313)
|+||++||++++.++++|++|+|+..||. .+++.|.++.. ..+++|||++.+.. |++ |+++..|+++
T Consensus 151 q~qr~~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tili~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~ 230 (250)
T PRK14262 151 QQQRLCIARALAVEPEVILLDEPTSALDPIATQRIEKLLEELSENYTIVIVTHNIGQAIRIADYIAFMYRGELIEYGPTR 230 (250)
T ss_pred HHHHHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHH
Confidence 99999999999999999999999999999 45555555533 24699999998766 554 8999999888
Q ss_pred HHHH
Q 021362 280 DVAK 283 (313)
Q Consensus 280 ev~~ 283 (313)
++..
T Consensus 231 ~~~~ 234 (250)
T PRK14262 231 EIVE 234 (250)
T ss_pred HHHh
Confidence 7754
|
|
| >PRK13549 xylose transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-35 Score=292.32 Aligned_cols=198 Identities=16% Similarity=0.156 Sum_probs=161.5
Q ss_pred cEEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCC--CCceeecCCCCC-----
Q 021362 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWP--QKASSFDSQVKP----- 148 (313)
Q Consensus 76 ~~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p--~~G~i~~~g~~~----- 148 (313)
+||+++|+++.|++.. +|+|+||+|++||+++|+||||||||||+|+|+|+++ | ++|+|.++|.+.
T Consensus 4 ~~l~~~nl~~~~~~~~----il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~---~~~~~G~i~~~g~~~~~~~~ 76 (506)
T PRK13549 4 YLLEMKNITKTFGGVK----ALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYP---HGTYEGEIIFEGEELQASNI 76 (506)
T ss_pred ceEEEeeeEEEeCCeE----eecceeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCC---CCCCCeEEEECCEECCCCCH
Confidence 5799999999998766 9999999999999999999999999999999999997 7 799999998653
Q ss_pred ----CCeEEEEecCCCCCCcccCCcccChHHHHHhc--C-CCCCccHHHHHHHHHHhhc--CCCccCCCCCCcCCCcchh
Q 021362 149 ----PDVATVLPMDGFHLYLSQLDAMEDPKEAHARR--G-APWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVED 219 (313)
Q Consensus 149 ----~~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~--~-~~~~~~~~~~~~~l~~l~~--~~~~~~~~LSgG~kqRv~i 219 (313)
.+.++|++|++..+. .+|+.||+.+....+ + .......+++.++++.++. ..++++.+||||||||++|
T Consensus 77 ~~~~~~~i~~v~q~~~~~~--~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqrv~l 154 (506)
T PRK13549 77 RDTERAGIAIIHQELALVK--ELSVLENIFLGNEITPGGIMDYDAMYLRAQKLLAQLKLDINPATPVGNLGLGQQQLVEI 154 (506)
T ss_pred HHHHHCCeEEEEeccccCC--CCcHHHHhhhcccccccCCcCHHHHHHHHHHHHHHcCCCCCcccchhhCCHHHHHHHHH
Confidence 245899999965433 489999998764322 1 1112234567888998884 3466778999999999999
Q ss_pred hhhhccCceEEEEcCCccccCh----hhHHHHHhhccc---eEEEEcChHHHHH---HHh----hcccccCCchHHH
Q 021362 220 DILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFDE---KWFIEVDLDTAMQ---RVL----KRHISTGKPPDVA 282 (313)
Q Consensus 220 a~al~~~ar~Li~d~~~lllDE----~~~~~l~~l~~~---~i~vtHd~~~~~~---rv~----griv~~G~~~ev~ 282 (313)
|++++.++++|++|+|+..||+ .+++.|.++.++ .|++|||++++.. |++ |+++..|+++++.
T Consensus 155 a~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvi~~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~ 231 (506)
T PRK13549 155 AKALNKQARLLILDEPTASLTESETAVLLDIIRDLKAHGIACIYISHKLNEVKAISDTICVIRDGRHIGTRPAAGMT 231 (506)
T ss_pred HHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHHHHHHhcCEEEEEECCEEeeecccccCC
Confidence 9999999999999999999999 455666555432 4799999999876 555 8999988887764
|
|
| >PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-35 Score=267.78 Aligned_cols=199 Identities=16% Similarity=0.111 Sum_probs=160.0
Q ss_pred cEEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCC-------
Q 021362 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP------- 148 (313)
Q Consensus 76 ~~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~------- 148 (313)
++|+++|+++.|++.. +|+|+||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|.+.
T Consensus 10 ~~l~i~~l~~~~~~~~----il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---~~~G~i~~~g~~~~~~~~~~ 82 (265)
T PRK10575 10 TTFALRNVSFRVPGRT----LLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQP---PSEGEILLDAQPLESWSSKA 82 (265)
T ss_pred ceEEEeeEEEEECCEE----EEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHcCCCC---CCCCEEEECCEehhhCCHHH
Confidence 4799999999998765 9999999999999999999999999999999999999 9999999999653
Q ss_pred -CCeEEEEecCCCCCCcccCCcccChHHHHHh-cC---CCCCccHHHHHHHHHHhhc--CCCccCCCCCCcCCCcchhhh
Q 021362 149 -PDVATVLPMDGFHLYLSQLDAMEDPKEAHAR-RG---APWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDI 221 (313)
Q Consensus 149 -~~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~-~~---~~~~~~~~~~~~~l~~l~~--~~~~~~~~LSgG~kqRv~ia~ 221 (313)
.+.++|++|+...++ .+|+.+|+.+.... .+ .......+++.++++.++. ..+.++.+|||||+||++||+
T Consensus 83 ~~~~i~~v~q~~~~~~--~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~lar 160 (265)
T PRK10575 83 FARKVAYLPQQLPAAE--GMTVRELVAIGRYPWHGALGRFGAADREKVEEAISLVGLKPLAHRLVDSLSGGERQRAWIAM 160 (265)
T ss_pred HhhheEEeccCCCCCC--CccHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCcccCCHHHHHHHHHHH
Confidence 235899999854433 47999998764321 11 1112234567788888874 346677899999999999999
Q ss_pred hhccCceEEEEcCCccccCh----hhHHHHHhhcc----ceEEEEcChHHHHH---HHh----hcccccCCchHHHH
Q 021362 222 LVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFD----EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAK 283 (313)
Q Consensus 222 al~~~ar~Li~d~~~lllDE----~~~~~l~~l~~----~~i~vtHd~~~~~~---rv~----griv~~G~~~ev~~ 283 (313)
+++.++++|++|+|+..||. .+++.|.++.+ ..+++|||++++.. |++ |++++.|+++++..
T Consensus 161 al~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~~~~tiii~sH~~~~i~~~~d~i~~l~~G~i~~~~~~~~~~~ 237 (265)
T PRK10575 161 LVAQDSRCLLLDEPTSALDIAHQVDVLALVHRLSQERGLTVIAVLHDINMAARYCDYLVALRGGEMIAQGTPAELMR 237 (265)
T ss_pred HHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEecCHHHhcC
Confidence 99999999999999999999 45566666542 24799999999876 554 89988898877643
|
|
| >PRK14269 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-35 Score=263.33 Aligned_cols=200 Identities=13% Similarity=0.103 Sum_probs=158.5
Q ss_pred EEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCC--------
Q 021362 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP-------- 148 (313)
Q Consensus 77 ~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~-------- 148 (313)
+++++|+++.|++.. +|+|+||+|++||+++|+||||||||||+++|+|+++...|++|+|.++|++.
T Consensus 2 ~~~~~~l~~~~~~~~----~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i~~~g~~i~~~~~~~~ 77 (246)
T PRK14269 2 IAKTTNLNLFYGKKQ----ALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDVVAL 77 (246)
T ss_pred ceeeeeeEEEECCEe----eeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCCceEEEECCEecccCCHHHH
Confidence 589999999998765 99999999999999999999999999999999999741116899999999763
Q ss_pred CCeEEEEecCCCCCCcccCCcccChHHHHHhcCCC--CCccHHHHHHHHHHhhcC------CCccCCCCCCcCCCcchhh
Q 021362 149 PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAP--WTFNPLLLLNCLKNLRNQ------GSVYAPSFDHGVGDPVEDD 220 (313)
Q Consensus 149 ~~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~--~~~~~~~~~~~l~~l~~~------~~~~~~~LSgG~kqRv~ia 220 (313)
...++|++|++..+ . .|+.||+.+....++.. .....+++.++++.++.. .+..+.+|||||+||+++|
T Consensus 78 ~~~i~~~~q~~~l~-~--~tv~eni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~la 154 (246)
T PRK14269 78 RKNVGMVFQQPNVF-V--KSIYENISYAPKLHGMIKNKDEEEALVVDCLQKVGLFEEVKDKLKQNALALSGGQQQRLCIA 154 (246)
T ss_pred hhhEEEEecCCccc-c--ccHHHHhhhHHhhcCcccChHHHHHHHHHHHHHcCCChhhhHHhcCCcccCCHHHHHHHHHH
Confidence 23589999996543 3 59999998765443321 122344567788887752 3456779999999999999
Q ss_pred hhhccCceEEEEcCCccccCh----hhHHHHHhhccc--eEEEEcChHHHHH---HHh----hcccccCCchHHHH
Q 021362 221 ILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFDE--KWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAK 283 (313)
Q Consensus 221 ~al~~~ar~Li~d~~~lllDE----~~~~~l~~l~~~--~i~vtHd~~~~~~---rv~----griv~~G~~~ev~~ 283 (313)
++++.+++++++|+|+..||. .+.+.|.++... .+++|||++++.. |++ |++++.|++.++..
T Consensus 155 ral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 230 (246)
T PRK14269 155 RALAIKPKLLLLDEPTSALDPISSGVIEELLKELSHNLSMIMVTHNMQQGKRVADYTAFFHLGELIEFGESKEFFE 230 (246)
T ss_pred HHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhhCcEEEEEECCEEEEECCHHHHHh
Confidence 999999999999999999999 445555554322 3799999998876 554 99999998887743
|
|
| >PRK14239 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.3e-35 Score=263.29 Aligned_cols=198 Identities=16% Similarity=0.139 Sum_probs=157.6
Q ss_pred cEEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHh--cccCC---CCceeecCCCCC--
Q 021362 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRI--NKIWP---QKASSFDSQVKP-- 148 (313)
Q Consensus 76 ~~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~--~~~~p---~~G~i~~~g~~~-- 148 (313)
++|+++|+++.|++.. +|+++||+|++||+++|+||||||||||+++|+|+. . | ++|+|.++|.+.
T Consensus 4 ~~l~~~~l~~~~~~~~----~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~---p~~~~~G~i~~~g~~~~~ 76 (252)
T PRK14239 4 PILQVSDLSVYYNKKK----ALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLN---PEVTITGSIVYNGHNIYS 76 (252)
T ss_pred ceEEEEeeEEEECCee----eeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcccccC---CCCCccceEEECCEECcC
Confidence 4799999999998765 999999999999999999999999999999999984 4 5 599999998653
Q ss_pred --------CCeEEEEecCCCCCCcccCCcccChHHHHHhcCCCCC-ccHHHHHHHHHHhhc------CCCccCCCCCCcC
Q 021362 149 --------PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWT-FNPLLLLNCLKNLRN------QGSVYAPSFDHGV 213 (313)
Q Consensus 149 --------~~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~~~-~~~~~~~~~l~~l~~------~~~~~~~~LSgG~ 213 (313)
...++|++|++.. +. +|+.||+.+.....+.... ...+.+.++++.++. ..+..+.+||+||
T Consensus 77 ~~~~~~~~~~~i~~v~q~~~~-~~--~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~ 153 (252)
T PRK14239 77 PRTDTVDLRKEIGMVFQQPNP-FP--MSIYENVVYGLRLKGIKDKQVLDEAVEKSLKGASIWDEVKDRLHDSALGLSGGQ 153 (252)
T ss_pred cccchHhhhhcEEEEecCCcc-Cc--CcHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCchhHHHHHhcCcccCCHHH
Confidence 2359999999653 33 6999999876544333221 123456667777763 2356777999999
Q ss_pred CCcchhhhhhccCceEEEEcCCccccCh----hhHHHHHhhcc--ceEEEEcChHHHHH---HHh----hcccccCCchH
Q 021362 214 GDPVEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFD--EKWFIEVDLDTAMQ---RVL----KRHISTGKPPD 280 (313)
Q Consensus 214 kqRv~ia~al~~~ar~Li~d~~~lllDE----~~~~~l~~l~~--~~i~vtHd~~~~~~---rv~----griv~~G~~~e 280 (313)
+||++||++++.++++|++|+|+..||. .+++.|+++.. ..+++|||++++.. |++ |++++.|++.+
T Consensus 154 ~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~ 233 (252)
T PRK14239 154 QQRVCIARVLATSPKIILLDEPTSALDPISAGKIEETLLGLKDDYTMLLVTRSMQQASRISDRTGFFLDGDLIEYNDTKQ 233 (252)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHHHHhhCCeEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHH
Confidence 9999999999999999999999999999 44555555432 24799999998876 555 89999999888
Q ss_pred HHH
Q 021362 281 VAK 283 (313)
Q Consensus 281 v~~ 283 (313)
+..
T Consensus 234 ~~~ 236 (252)
T PRK14239 234 MFM 236 (252)
T ss_pred HHh
Confidence 754
|
|
| >PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-35 Score=271.04 Aligned_cols=201 Identities=15% Similarity=0.182 Sum_probs=161.9
Q ss_pred EEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCC---ceeecCCCCCC----
Q 021362 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQK---ASSFDSQVKPP---- 149 (313)
Q Consensus 77 ~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~---G~i~~~g~~~~---- 149 (313)
+|+++|+++.|++.. ..+|+++||+|++||+++|+||||||||||+++|+|+++ |++ |+|.++|.+..
T Consensus 5 ~l~i~~l~~~~~~~~--~~~l~~v~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~~---p~~g~~G~i~i~g~~~~~~~~ 79 (282)
T PRK13640 5 IVEFKHVSFTYPDSK--KPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLL---PDDNPNSKITVDGITLTAKTV 79 (282)
T ss_pred eEEEEEEEEEcCCCC--ccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcccC---CCCCCCcEEEECCEECCcCCH
Confidence 699999999996421 128999999999999999999999999999999999998 987 89999997642
Q ss_pred ----CeEEEEecCCCCCCcccCCcccChHHHHHhcCCCCCccHHHHHHHHHHhhcC--CCccCCCCCCcCCCcchhhhhh
Q 021362 150 ----DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILV 223 (313)
Q Consensus 150 ----~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~~~~~LSgG~kqRv~ia~al 223 (313)
..++|++|++...+. ..|+.||+.+.....+...+...+++.++++.++.. .+.++.+|||||+||++||+++
T Consensus 80 ~~~~~~ig~v~q~~~~~~~-~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LS~G~~qrv~laral 158 (282)
T PRK13640 80 WDIREKVGIVFQNPDNQFV-GATVGDDVAFGLENRAVPRPEMIKIVRDVLADVGMLDYIDSEPANLSGGQKQRVAIAGIL 158 (282)
T ss_pred HHHHhheEEEEECHHHhhc-cCCHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCChhHhcCCcccCCHHHHHHHHHHHHH
Confidence 358999999632222 379999998765444433333345677888888843 4667789999999999999999
Q ss_pred ccCceEEEEcCCccccCh----hhHHHHHhhcc----ceEEEEcChHHHHH--HHh----hcccccCCchHHHH
Q 021362 224 GLQHKVVIVDGNYLFLDG----GVWKDVSSMFD----EKWFIEVDLDTAMQ--RVL----KRHISTGKPPDVAK 283 (313)
Q Consensus 224 ~~~ar~Li~d~~~lllDE----~~~~~l~~l~~----~~i~vtHd~~~~~~--rv~----griv~~G~~~ev~~ 283 (313)
+.++++|++|+|+..||. .+++.|+++.+ .++++|||++++.. |++ |++++.|+++++..
T Consensus 159 ~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 232 (282)
T PRK13640 159 AVEPKIIILDESTSMLDPAGKEQILKLIRKLKKKNNLTVISITHDIDEANMADQVLVLDDGKLLAQGSPVEIFS 232 (282)
T ss_pred HcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 999999999999999999 55666666543 24699999999855 544 99999999888754
|
|
| >PRK10762 D-ribose transporter ATP binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-35 Score=292.20 Aligned_cols=199 Identities=17% Similarity=0.182 Sum_probs=161.0
Q ss_pred cEEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCC-------
Q 021362 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP------- 148 (313)
Q Consensus 76 ~~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~------- 148 (313)
+||+++|+++.|++.. +|+|+||+|++|+++||+||||||||||+|+|+|+++ |++|+|.++|.+.
T Consensus 3 ~~i~~~~l~~~~~~~~----~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~---p~~G~i~~~g~~~~~~~~~~ 75 (501)
T PRK10762 3 ALLQLKGIDKAFPGVK----ALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYT---RDAGSILYLGKEVTFNGPKS 75 (501)
T ss_pred ceEEEeeeEEEeCCeE----EeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCC---CCCcEEEECCEECCCCCHHH
Confidence 3799999999998766 9999999999999999999999999999999999999 9999999998653
Q ss_pred --CCeEEEEecCCCCCCcccCCcccChHHHHHhc---C-CCCCccHHHHHHHHHHhhcC--CCccCCCCCCcCCCcchhh
Q 021362 149 --PDVATVLPMDGFHLYLSQLDAMEDPKEAHARR---G-APWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDD 220 (313)
Q Consensus 149 --~~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~---~-~~~~~~~~~~~~~l~~l~~~--~~~~~~~LSgG~kqRv~ia 220 (313)
.+.++|++|++..+. .+|++||+.++...+ + .......+++.++++.++.. .++++.+||||||||++||
T Consensus 76 ~~~~~i~~v~q~~~~~~--~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la 153 (501)
T PRK10762 76 SQEAGIGIIHQELNLIP--QLTIAENIFLGREFVNRFGRIDWKKMYAEADKLLARLNLRFSSDKLVGELSIGEQQMVEIA 153 (501)
T ss_pred HHhCCEEEEEcchhccC--CCcHHHHhhhccccccccCccCHHHHHHHHHHHHHHcCCCCCccCchhhCCHHHHHHHHHH
Confidence 235899999964433 489999998764322 1 11112235677888888843 4667789999999999999
Q ss_pred hhhccCceEEEEcCCccccCh----hhHHHHHhhccc---eEEEEcChHHHHH---HHh----hcccccCCchHHHH
Q 021362 221 ILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFDE---KWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAK 283 (313)
Q Consensus 221 ~al~~~ar~Li~d~~~lllDE----~~~~~l~~l~~~---~i~vtHd~~~~~~---rv~----griv~~G~~~ev~~ 283 (313)
+|++.++++|++|+|+..||. .+++.|+++.+. .|++|||++++.. |++ |+++..|+++++..
T Consensus 154 ~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvii~sHd~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 230 (501)
T PRK10762 154 KVLSFESKVIIMDEPTDALTDTETESLFRVIRELKSQGRGIVYISHRLKEIFEICDDVTVFRDGQFIAEREVADLTE 230 (501)
T ss_pred HHHhcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEecCcCcCCH
Confidence 999999999999999999999 455555555432 4799999999876 555 89988888877643
|
|
| >cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-35 Score=259.71 Aligned_cols=180 Identities=17% Similarity=0.182 Sum_probs=146.4
Q ss_pred EEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCC---------
Q 021362 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP--------- 148 (313)
Q Consensus 78 l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~--------- 148 (313)
|+++|+++.|++.. +|+++||++++|++++|+||||||||||+++|+|+++ |++|+|.++|.+.
T Consensus 1 l~~~~l~~~~~~~~----~l~~~s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~~~~~~~~~~~ 73 (213)
T cd03262 1 IEIKNLHKSFGDFH----VLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEE---PDSGTIIIDGLKLTDDKKNINE 73 (213)
T ss_pred CEEEEEEEEECCeE----eecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCceEEECCEECCccchhHHH
Confidence 46899999998766 9999999999999999999999999999999999999 9999999998653
Q ss_pred -CCeEEEEecCCCCCCcccCCcccChHHHHH-hcCCCCCccHHHHHHHHHHhhcC--CCccCCCCCCcCCCcchhhhhhc
Q 021362 149 -PDVATVLPMDGFHLYLSQLDAMEDPKEAHA-RRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVG 224 (313)
Q Consensus 149 -~~~i~~v~qd~~~~~~~~ltv~e~~~~~~~-~~~~~~~~~~~~~~~~l~~l~~~--~~~~~~~LSgG~kqRv~ia~al~ 224 (313)
.+.++|++|++..++ .+|+.||+.+... .++.......+++.++++.++.. .++.+.+|||||+||++||++++
T Consensus 74 ~~~~i~~~~q~~~~~~--~~t~~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~ 151 (213)
T cd03262 74 LRQKVGMVFQQFNLFP--HLTVLENITLAPIKVKGMSKAEAEERALELLEKVGLADKADAYPAQLSGGQQQRVAIARALA 151 (213)
T ss_pred HHhcceEEecccccCC--CCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhhCccccCHHHHHHHHHHHHHh
Confidence 235899999975443 4799999987643 22322222345667788888743 46677899999999999999999
Q ss_pred cCceEEEEcCCccccCh----hhHHHHHhhccc---eEEEEcChHHHHH
Q 021362 225 LQHKVVIVDGNYLFLDG----GVWKDVSSMFDE---KWFIEVDLDTAMQ 266 (313)
Q Consensus 225 ~~ar~Li~d~~~lllDE----~~~~~l~~l~~~---~i~vtHd~~~~~~ 266 (313)
.++++|++|+|+..||. .+++.|+++.+. .|++|||++++..
T Consensus 152 ~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tvi~~sh~~~~~~~ 200 (213)
T cd03262 152 MNPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMVVVTHEMGFARE 200 (213)
T ss_pred cCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHH
Confidence 99999999999999998 455666655432 4699999998864
|
Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM |
| >cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-35 Score=259.40 Aligned_cols=180 Identities=16% Similarity=0.075 Sum_probs=146.4
Q ss_pred EEEccceEEccc-cccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCCC-------
Q 021362 78 VEARCMDEVYDA-LAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPP------- 149 (313)
Q Consensus 78 l~~~~l~~~y~~-~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~~------- 149 (313)
|+++|+++.|++ .. +|+|+||++++|++++|+||||||||||+++|+|+++ |++|+|.++|.+..
T Consensus 1 l~~~~l~~~~~~~~~----~l~~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~i~~~~~~~~ 73 (214)
T cd03292 1 IEFINVTKTYPNGTA----ALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEEL---PTSGTIRVNGQDVSDLRGRAI 73 (214)
T ss_pred CEEEEEEEEeCCCce----eeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC---CCceEEEECCEEcccCCHHHH
Confidence 468999999964 34 9999999999999999999999999999999999999 99999999986532
Q ss_pred ----CeEEEEecCCCCCCcccCCcccChHHHHHhcCCCCCccHHHHHHHHHHhhc--CCCccCCCCCCcCCCcchhhhhh
Q 021362 150 ----DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDILV 223 (313)
Q Consensus 150 ----~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~~~~~~~~~~~~l~~l~~--~~~~~~~~LSgG~kqRv~ia~al 223 (313)
+.++|++|++..++ .+|+.||+.+....++.......+++.++++.++. ..+.++.+|||||+||++||+++
T Consensus 74 ~~~~~~i~~v~q~~~~~~--~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral 151 (214)
T cd03292 74 PYLRRKIGVVFQDFRLLP--DRNVYENVAFALEVTGVPPREIRKRVPAALELVGLSHKHRALPAELSGGEQQRVAIARAI 151 (214)
T ss_pred HHHHHheEEEecCchhcc--CCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCChhhcCHHHHHHHHHHHHH
Confidence 35899999965443 47999999887554443322334567788888774 34566779999999999999999
Q ss_pred ccCceEEEEcCCccccCh----hhHHHHHhhccc---eEEEEcChHHHHH
Q 021362 224 GLQHKVVIVDGNYLFLDG----GVWKDVSSMFDE---KWFIEVDLDTAMQ 266 (313)
Q Consensus 224 ~~~ar~Li~d~~~lllDE----~~~~~l~~l~~~---~i~vtHd~~~~~~ 266 (313)
+.+++++++|+|+..||. .+.+.|+++.+. .|++|||++++..
T Consensus 152 ~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tiiivtH~~~~~~~ 201 (214)
T cd03292 152 VNSPTILIADEPTGNLDPDTTWEIMNLLKKINKAGTTVVVATHAKELVDT 201 (214)
T ss_pred HcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHH
Confidence 999999999999999998 455556655432 4799999998864
|
The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring. |
| >PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-35 Score=261.56 Aligned_cols=197 Identities=16% Similarity=0.122 Sum_probs=157.2
Q ss_pred EEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCCC------C
Q 021362 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPP------D 150 (313)
Q Consensus 77 ~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~~------~ 150 (313)
||+++||++.|++.. .++||+|.+|++++|+||||||||||+++|+|+++ |++|+|.++|.+.. .
T Consensus 1 ~l~~~~l~~~~~~~~------~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~---~~~G~i~~~g~~~~~~~~~~~ 71 (232)
T PRK10771 1 MLKLTDITWLYHHLP------MRFDLTVERGERVAILGPSGAGKSTLLNLIAGFLT---PASGSLTLNGQDHTTTPPSRR 71 (232)
T ss_pred CeEEEEEEEEECCcc------ceeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCceEEECCeecCcCChhhc
Confidence 488999999997532 38999999999999999999999999999999999 99999999997532 3
Q ss_pred eEEEEecCCCCCCcccCCcccChHHHHHhcCCCCCccHHHHHHHHHHhhc--CCCccCCCCCCcCCCcchhhhhhccCce
Q 021362 151 VATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDILVGLQHK 228 (313)
Q Consensus 151 ~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~~~~~~~~~~~~l~~l~~--~~~~~~~~LSgG~kqRv~ia~al~~~ar 228 (313)
.++|++|++..+. .+|+.||+.+.............+++.++++.++. ..++++.+|||||+||++||++++.+++
T Consensus 72 ~i~~~~q~~~~~~--~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~ 149 (232)
T PRK10771 72 PVSMLFQENNLFS--HLTVAQNIGLGLNPGLKLNAAQREKLHAIARQMGIEDLLARLPGQLSGGQRQRVALARCLVREQP 149 (232)
T ss_pred cEEEEeccccccc--CCcHHHHHhcccccccCCCHHHHHHHHHHHHHcCcHHHHhCCcccCCHHHHHHHHHHHHHhcCCC
Confidence 5899999965443 47999999765321101112234567888888874 3466777999999999999999999999
Q ss_pred EEEEcCCccccCh----hhHHHHHhhcc----ceEEEEcChHHHHH---HHh----hcccccCCchHHHHH
Q 021362 229 VVIVDGNYLFLDG----GVWKDVSSMFD----EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAKW 284 (313)
Q Consensus 229 ~Li~d~~~lllDE----~~~~~l~~l~~----~~i~vtHd~~~~~~---rv~----griv~~G~~~ev~~~ 284 (313)
++++|+|+..||. .+++.|.++.+ ..|++|||++++.. |++ |++++.|+++++...
T Consensus 150 lllLDEP~~gLD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~g~i~~~g~~~~~~~~ 220 (232)
T PRK10771 150 ILLLDEPFSALDPALRQEMLTLVSQVCQERQLTLLMVSHSLEDAARIAPRSLVVADGRIAWDGPTDELLSG 220 (232)
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhC
Confidence 9999999999999 45566666543 24799999999865 555 899889988777543
|
|
| >PRK14254 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-34 Score=267.27 Aligned_cols=201 Identities=11% Similarity=0.078 Sum_probs=159.8
Q ss_pred ccEEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhccc--CCCCceeecCCCCC----
Q 021362 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKI--WPQKASSFDSQVKP---- 148 (313)
Q Consensus 75 m~~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~--~p~~G~i~~~g~~~---- 148 (313)
.++|+++|+++.|++.. +|+|+||+|++|++++|+||||||||||+++|+|+++.. .|++|+|.++|.+.
T Consensus 37 ~~~l~i~~l~~~~~~~~----il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~I~i~G~~i~~~~ 112 (285)
T PRK14254 37 ETVIEARDLNVFYGDEQ----ALDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRGKNVYDAD 112 (285)
T ss_pred CceEEEEEEEEEECCEe----eEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccc
Confidence 35799999999998765 999999999999999999999999999999999998510 04899999998653
Q ss_pred ------CCeEEEEecCCCCCCcccCCcccChHHHHHhcCCCCCccHHHHHHHHHHhhcC------CCccCCCCCCcCCCc
Q 021362 149 ------PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ------GSVYAPSFDHGVGDP 216 (313)
Q Consensus 149 ------~~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~------~~~~~~~LSgG~kqR 216 (313)
.+.++|++|++.. +. .++.||+.+.....+.+. ...+++.++++.++.. .+.++.+||||||||
T Consensus 113 ~~~~~~~~~i~~v~q~~~l-~~--~tv~enl~~~~~~~~~~~-~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LSgGe~qr 188 (285)
T PRK14254 113 VDPVALRRRIGMVFQKPNP-FP--KSIYDNVAYGLKIQGYDG-DIDERVEESLRRAALWDEVKDQLDSSGLDLSGGQQQR 188 (285)
T ss_pred cchHhhhccEEEEecCCcc-Cc--CCHHHHHHHHHHHcCCcH-HHHHHHHHHHHHcCCCchhHHHHhCCcccCCHHHHHH
Confidence 2358999999643 33 499999987655444322 2345677888887642 356777999999999
Q ss_pred chhhhhhccCceEEEEcCCccccCh----hhHHHHHhhccc--eEEEEcChHHHHH---HH-h----hcccccCCchHHH
Q 021362 217 VEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFDE--KWFIEVDLDTAMQ---RV-L----KRHISTGKPPDVA 282 (313)
Q Consensus 217 v~ia~al~~~ar~Li~d~~~lllDE----~~~~~l~~l~~~--~i~vtHd~~~~~~---rv-~----griv~~G~~~ev~ 282 (313)
++||++++.++++|++|+|+..||. .+++.|+++.++ .|++|||++++.. |+ + |++++.|++.++.
T Consensus 189 v~LAraL~~~p~lLLLDEPts~LD~~~~~~l~~~L~~~~~~~tiii~tH~~~~i~~~~dri~v~l~~G~i~~~g~~~~~~ 268 (285)
T PRK14254 189 LCIARAIAPDPEVILMDEPASALDPVATSKIEDLIEELAEEYTVVIVTHNMQQAARISDKTAVFLTGGELVEFDDTDKIF 268 (285)
T ss_pred HHHHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCEEEEEeeCCEEEEeCCHHHHH
Confidence 9999999999999999999999999 455566665433 4799999999876 53 2 8888888887764
Q ss_pred H
Q 021362 283 K 283 (313)
Q Consensus 283 ~ 283 (313)
.
T Consensus 269 ~ 269 (285)
T PRK14254 269 E 269 (285)
T ss_pred h
Confidence 3
|
|
| >PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-35 Score=266.87 Aligned_cols=199 Identities=13% Similarity=0.154 Sum_probs=160.6
Q ss_pred cEEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCC-------
Q 021362 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP------- 148 (313)
Q Consensus 76 ~~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~------- 148 (313)
.+|+++|+++.|++.. +|+++||+|.+|++++|+||||||||||+++|+|+++ |++|+|.++|.+.
T Consensus 6 ~~l~i~~l~~~~~~~~----~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~---~~~G~i~~~g~~~~~~~~~~ 78 (265)
T PRK10253 6 ARLRGEQLTLGYGKYT----VAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMT---PAHGHVWLDGEHIQHYASKE 78 (265)
T ss_pred cEEEEEEEEEEECCEE----EeeecceEECCCCEEEEECCCCCCHHHHHHHHcCCCC---CCCcEEEECCEEhhhCCHHH
Confidence 3799999999998766 9999999999999999999999999999999999999 9999999998653
Q ss_pred -CCeEEEEecCCCCCCcccCCcccChHHHHHhc-CC---CCCccHHHHHHHHHHhhc--CCCccCCCCCCcCCCcchhhh
Q 021362 149 -PDVATVLPMDGFHLYLSQLDAMEDPKEAHARR-GA---PWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDI 221 (313)
Q Consensus 149 -~~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~-~~---~~~~~~~~~~~~l~~l~~--~~~~~~~~LSgG~kqRv~ia~ 221 (313)
...++|++|++..++ .+++.+|+.+..... +. ......+++.++++.++. ..++++.+|||||+||++||+
T Consensus 79 ~~~~i~~v~q~~~~~~--~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~lar 156 (265)
T PRK10253 79 VARRIGLLAQNATTPG--DITVQELVARGRYPHQPLFTRWRKEDEEAVTKAMQATGITHLADQSVDTLSGGQRQRAWIAM 156 (265)
T ss_pred HhhheEEeeccCcCCC--CCcHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCcccCChHHHHHHHHHH
Confidence 235899999965443 379999987642111 10 111223466788888774 346778899999999999999
Q ss_pred hhccCceEEEEcCCccccCh----hhHHHHHhhcc----ceEEEEcChHHHHH---HHh----hcccccCCchHHHH
Q 021362 222 LVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFD----EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAK 283 (313)
Q Consensus 222 al~~~ar~Li~d~~~lllDE----~~~~~l~~l~~----~~i~vtHd~~~~~~---rv~----griv~~G~~~ev~~ 283 (313)
|++.++++|++|+|+..||. .+++.|.++.+ ..|++|||++++.. |++ |++++.|++.++..
T Consensus 157 al~~~p~llllDEPt~gLD~~~~~~l~~~L~~l~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 233 (265)
T PRK10253 157 VLAQETAIMLLDEPTTWLDISHQIDLLELLSELNREKGYTLAAVLHDLNQACRYASHLIALREGKIVAQGAPKEIVT 233 (265)
T ss_pred HHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHhh
Confidence 99999999999999999999 45666666543 24799999998876 554 89999999888754
|
|
| >PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-35 Score=268.29 Aligned_cols=202 Identities=16% Similarity=0.164 Sum_probs=161.6
Q ss_pred cEEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCCC------
Q 021362 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPP------ 149 (313)
Q Consensus 76 ~~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~~------ 149 (313)
++|+++|+++.|++.. ..+|+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.+..
T Consensus 6 ~~l~i~~l~~~~~~~~--~~~l~~isl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~---~~~G~i~~~g~~~~~~~~~~ 80 (269)
T PRK13648 6 SIIVFKNVSFQYQSDA--SFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEK---VKSGEIFYNNQAITDDNFEK 80 (269)
T ss_pred ceEEEEEEEEEcCCCC--CcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC---CCceEEEECCEECCcCCHHH
Confidence 4799999999997521 128999999999999999999999999999999999999 99999999997632
Q ss_pred --CeEEEEecCCCCCCcccCCcccChHHHHHhcCCCCCccHHHHHHHHHHhhc--CCCccCCCCCCcCCCcchhhhhhcc
Q 021362 150 --DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDILVGL 225 (313)
Q Consensus 150 --~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~~~~~~~~~~~~l~~l~~--~~~~~~~~LSgG~kqRv~ia~al~~ 225 (313)
+.++|++|++..++. ..++.+|+.+.....+.......+++.++++.++. ..+.++.+||+||+||++||+|++.
T Consensus 81 ~~~~i~~v~q~~~~~~~-~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~ 159 (269)
T PRK13648 81 LRKHIGIVFQNPDNQFV-GSIVKYDVAFGLENHAVPYDEMHRRVSEALKQVDMLERADYEPNALSGGQKQRVAIAGVLAL 159 (269)
T ss_pred HHhheeEEEeChHHhcc-cccHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCchhhhCCcccCCHHHHHHHHHHHHHHc
Confidence 358999999642222 36888998776544433322334566788888874 3456777999999999999999999
Q ss_pred CceEEEEcCCccccCh----hhHHHHHhhcc----ceEEEEcChHHHHH--HHh----hcccccCCchHHHH
Q 021362 226 QHKVVIVDGNYLFLDG----GVWKDVSSMFD----EKWFIEVDLDTAMQ--RVL----KRHISTGKPPDVAK 283 (313)
Q Consensus 226 ~ar~Li~d~~~lllDE----~~~~~l~~l~~----~~i~vtHd~~~~~~--rv~----griv~~G~~~ev~~ 283 (313)
++++|++|+|+..||. .+++.|+++.+ ..|++|||++++.. |++ |++++.|+++++..
T Consensus 160 ~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tiiivtH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 231 (269)
T PRK13648 160 NPSVIILDEATSMLDPDARQNLLDLVRKVKSEHNITIISITHDLSEAMEADHVIVMNKGTVYKEGTPTEIFD 231 (269)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCchHHhcCCEEEEEECCEEEEecCHHHHhc
Confidence 9999999999999999 55566666543 24699999999876 554 89999999888754
|
|
| >PRK14240 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-34 Score=262.00 Aligned_cols=202 Identities=11% Similarity=0.111 Sum_probs=157.6
Q ss_pred ccEEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcc--cCCCCceeecCCCCC----
Q 021362 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINK--IWPQKASSFDSQVKP---- 148 (313)
Q Consensus 75 m~~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~--~~p~~G~i~~~g~~~---- 148 (313)
|.+|+++|+++.|++.. +|+|+||+|++||+++|+||||||||||+++|+|+++. ..|++|+|.++|.+.
T Consensus 1 ~~~l~~~~l~~~~~~~~----~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~ 76 (250)
T PRK14240 1 MGKISVKDLDLFYGDFQ----ALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIYKSD 76 (250)
T ss_pred CCeEEEEEEEEEECCce----eeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccc
Confidence 34699999999998765 99999999999999999999999999999999998750 001699999998653
Q ss_pred ------CCeEEEEecCCCCCCcccCCcccChHHHHHhcCCCC-CccHHHHHHHHHHhhc------CCCccCCCCCCcCCC
Q 021362 149 ------PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPW-TFNPLLLLNCLKNLRN------QGSVYAPSFDHGVGD 215 (313)
Q Consensus 149 ------~~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~~-~~~~~~~~~~l~~l~~------~~~~~~~~LSgG~kq 215 (313)
...++|++|++.. +. +|+.+|+.+.....+... ....+++.++++.++. ..+.++.+|||||+|
T Consensus 77 ~~~~~~~~~i~~~~q~~~~-~~--~t~~~ni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~q 153 (250)
T PRK14240 77 IDVNQLRKRVGMVFQQPNP-FP--MSIYDNVAYGPRTHGIKDKKKLDEIVEKSLKGAALWDEVKDRLKKSALGLSGGQQQ 153 (250)
T ss_pred cchHHHhccEEEEecCCcc-Cc--ccHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhHHHHhcCCCCCCHHHHH
Confidence 2358999998643 32 699999988654443221 1234456677777653 235667799999999
Q ss_pred cchhhhhhccCceEEEEcCCccccCh----hhHHHHHhhcc--ceEEEEcChHHHHH---HHh----hcccccCCchHHH
Q 021362 216 PVEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFD--EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVA 282 (313)
Q Consensus 216 Rv~ia~al~~~ar~Li~d~~~lllDE----~~~~~l~~l~~--~~i~vtHd~~~~~~---rv~----griv~~G~~~ev~ 282 (313)
|++||++++.++++|++|+|+..||. .+++.|+++.. ..+++|||++.+.. |++ |++++.|.++++.
T Consensus 154 rv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~ 233 (250)
T PRK14240 154 RLCIARALAVEPEVLLMDEPTSALDPISTLKIEELIQELKKDYTIVIVTHNMQQASRISDKTAFFLNGEIVEFGDTVDLF 233 (250)
T ss_pred HHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEEeCHHHHHhhCCEEEEEECCEEEEeCCHHHHH
Confidence 99999999999999999999999999 45555555532 24799999998876 554 8999999887764
Q ss_pred H
Q 021362 283 K 283 (313)
Q Consensus 283 ~ 283 (313)
.
T Consensus 234 ~ 234 (250)
T PRK14240 234 T 234 (250)
T ss_pred h
Confidence 3
|
|
| >PRK14256 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-34 Score=261.99 Aligned_cols=201 Identities=10% Similarity=0.084 Sum_probs=158.0
Q ss_pred EEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcc--cCCCCceeecCCCCC------
Q 021362 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINK--IWPQKASSFDSQVKP------ 148 (313)
Q Consensus 77 ~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~--~~p~~G~i~~~g~~~------ 148 (313)
.|+++|+++.|++.. +|+|+||+|++||+++|+||||||||||+++|+|+++. ..|++|+|.++|.+.
T Consensus 4 ~l~~~nl~~~~~~~~----~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~ 79 (252)
T PRK14256 4 KVKLEQLNVHFGKNH----AVKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDRGVD 79 (252)
T ss_pred EEEEEEEEEEeCCee----EEecceEEEcCCCEEEEECCCCCCHHHHHHHHHhcccCCCCCCCceEEEECCEEcccccCC
Confidence 689999999998665 99999999999999999999999999999999999840 002689999999653
Q ss_pred ----CCeEEEEecCCCCCCcccCCcccChHHHHHhcCCC-CCccHHHHHHHHHHhhcC------CCccCCCCCCcCCCcc
Q 021362 149 ----PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAP-WTFNPLLLLNCLKNLRNQ------GSVYAPSFDHGVGDPV 217 (313)
Q Consensus 149 ----~~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~-~~~~~~~~~~~l~~l~~~------~~~~~~~LSgG~kqRv 217 (313)
.+.++|++|+...+. .+|+.||+.+.....+.. .....+++.++++.++.. .+..+.+|||||+||+
T Consensus 80 ~~~~~~~i~~~~q~~~~~~--~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrl 157 (252)
T PRK14256 80 PVSIRRRVGMVFQKPNPFP--AMSIYDNVIAGYKLNGRVNRSEADEIVESSLKRVALWDEVKDRLKSNAMELSGGQQQRL 157 (252)
T ss_pred hHHhhccEEEEecCCCCCC--cCcHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhHHhhCCcCcCCHHHHHHH
Confidence 234899999965443 479999998765433322 122234567777777742 2456779999999999
Q ss_pred hhhhhhccCceEEEEcCCccccCh----hhHHHHHhhcc--ceEEEEcChHHHHH---HHh----hcccccCCchHHHH
Q 021362 218 EDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFD--EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAK 283 (313)
Q Consensus 218 ~ia~al~~~ar~Li~d~~~lllDE----~~~~~l~~l~~--~~i~vtHd~~~~~~---rv~----griv~~G~~~ev~~ 283 (313)
+||++++.++++|++|+|+..||. .+.+.|+++.+ ..|++|||++++.. |++ |++++.|+++++..
T Consensus 158 ~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 236 (252)
T PRK14256 158 CIARTIAVKPEVILMDEPASALDPISTLKIEELIEELKEKYTIIIVTHNMQQAARVSDYTAFFYMGDLVECGETKKIFT 236 (252)
T ss_pred HHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCcEEEEECCHHHHHhhCCEEEEEECCEEEEeCCHHHHHh
Confidence 999999999999999999999999 44555555533 24799999999876 554 89999999888753
|
|
| >PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-35 Score=265.62 Aligned_cols=197 Identities=15% Similarity=0.110 Sum_probs=158.7
Q ss_pred cEEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCC---CceeecCCCCCC---
Q 021362 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQ---KASSFDSQVKPP--- 149 (313)
Q Consensus 76 ~~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~---~G~i~~~g~~~~--- 149 (313)
++|+++||++.|++.. +|+++||++.+||+++|+||||||||||+++|+|+++ |+ +|+|.++|.+..
T Consensus 3 ~~l~~~nl~~~~~~~~----il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~---p~~~~~G~i~~~g~~~~~~~ 75 (262)
T PRK09984 3 TIIRVEKLAKTFNQHQ----ALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLIT---GDKSAGSHIELLGRTVQREG 75 (262)
T ss_pred cEEEEeeEEEEeCCeE----EEecceEEEcCCcEEEEECCCCCCHHHHHHHHhccCC---CCCCCceEEEECCEeccccc
Confidence 3799999999998766 9999999999999999999999999999999999998 76 499999996531
Q ss_pred ----------CeEEEEecCCCCCCcccCCcccChHHHHHhc--------CCCCCccHHHHHHHHHHhhcC--CCccCCCC
Q 021362 150 ----------DVATVLPMDGFHLYLSQLDAMEDPKEAHARR--------GAPWTFNPLLLLNCLKNLRNQ--GSVYAPSF 209 (313)
Q Consensus 150 ----------~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~--------~~~~~~~~~~~~~~l~~l~~~--~~~~~~~L 209 (313)
..++|++|++..++ .+|+.+|+.+..... +........++.++++.++.. .++.+.+|
T Consensus 76 ~~~~~~~~~~~~i~~~~q~~~~~~--~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~L 153 (262)
T PRK09984 76 RLARDIRKSRANTGYIFQQFNLVN--RLSVLENVLIGALGSTPFWRTCFSWFTREQKQRALQALTRVGMVHFAHQRVSTL 153 (262)
T ss_pred ccchhHHHHHhheEEEcccccccc--CCcHHHHHHhhhcccccchhhhcccccHHHHHHHHHHHHHcCCHHHHhCCcccc
Confidence 24899999965433 489999997653210 111122345678888888743 46677799
Q ss_pred CCcCCCcchhhhhhccCceEEEEcCCccccCh----hhHHHHHhhcc----ceEEEEcChHHHHH---HHh----hcccc
Q 021362 210 DHGVGDPVEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFD----EKWFIEVDLDTAMQ---RVL----KRHIS 274 (313)
Q Consensus 210 SgG~kqRv~ia~al~~~ar~Li~d~~~lllDE----~~~~~l~~l~~----~~i~vtHd~~~~~~---rv~----griv~ 274 (313)
|+||+||++||++++.++++|++|+|+..||. .+++.|+++.+ ..|++|||++++.. |++ |+++.
T Consensus 154 S~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~tH~~~~~~~~~d~i~~l~~g~i~~ 233 (262)
T PRK09984 154 SGGQQQRVAIARALMQQAKVILADEPIASLDPESARIVMDTLRDINQNDGITVVVTLHQVDYALRYCERIVALRQGHVFY 233 (262)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEecCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE
Confidence 99999999999999999999999999999999 55666666643 24799999998776 554 88989
Q ss_pred cCCchHH
Q 021362 275 TGKPPDV 281 (313)
Q Consensus 275 ~G~~~ev 281 (313)
.|+++++
T Consensus 234 ~g~~~~~ 240 (262)
T PRK09984 234 DGSSQQF 240 (262)
T ss_pred eCCHHHh
Confidence 9988775
|
|
| >PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-35 Score=270.26 Aligned_cols=203 Identities=12% Similarity=0.051 Sum_probs=158.9
Q ss_pred EEEEccceEEcccccc-ccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCC-------
Q 021362 77 VVEARCMDEVYDALAQ-RLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP------- 148 (313)
Q Consensus 77 ~l~~~~l~~~y~~~~~-~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~------- 148 (313)
.|+++|+++.|++... ...+|+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.+.
T Consensus 6 ~l~i~nl~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~---p~~G~i~~~g~~i~~~~~~~ 82 (289)
T PRK13645 6 DIILDNVSYTYAKKTPFEFKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLII---SETGQTIVGDYAIPANLKKI 82 (289)
T ss_pred eEEEEEEEEEeCCCCccccceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCC---CCCceEEECCEEcccccccc
Confidence 5999999999975320 1238999999999999999999999999999999999999 9999999998542
Q ss_pred ------CCeEEEEecCCCCCCcccCCcccChHHHHHhcCCCCCccHHHHHHHHHHhhc---CCCccCCCCCCcCCCcchh
Q 021362 149 ------PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN---QGSVYAPSFDHGVGDPVED 219 (313)
Q Consensus 149 ------~~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~~~~~~~~~~~~l~~l~~---~~~~~~~~LSgG~kqRv~i 219 (313)
.+.++|++|++..... ..|+.||+.+.....+.......+++.++++.++. ..++++.+|||||+||++|
T Consensus 83 ~~~~~~~~~i~~v~q~~~~~~~-~~tv~enl~~~~~~~~~~~~~~~~~~~~ll~~~~L~~~~~~~~~~~LS~Gq~qrv~l 161 (289)
T PRK13645 83 KEVKRLRKEIGLVFQFPEYQLF-QETIEKDIAFGPVNLGENKQEAYKKVPELLKLVQLPEDYVKRSPFELSGGQKRRVAL 161 (289)
T ss_pred ccHHHHhccEEEEEeCcchhhh-hhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhHhcCChhhCCHHHHHHHHH
Confidence 2358999999632221 25999999876543332222223456677887775 2356777999999999999
Q ss_pred hhhhccCceEEEEcCCccccCh----hhHHHHHhhcc----ceEEEEcChHHHHH---HHh----hcccccCCchHHHH
Q 021362 220 DILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFD----EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAK 283 (313)
Q Consensus 220 a~al~~~ar~Li~d~~~lllDE----~~~~~l~~l~~----~~i~vtHd~~~~~~---rv~----griv~~G~~~ev~~ 283 (313)
|+|++.++++|++|+|+..||. .+++.|+++.+ ..|++|||++++.. |++ |++++.|+++++..
T Consensus 162 aral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 240 (289)
T PRK13645 162 AGIIAMDGNTLVLDEPTGGLDPKGEEDFINLFERLNKEYKKRIIMVTHNMDQVLRIADEVIVMHEGKVISIGSPFEIFS 240 (289)
T ss_pred HHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 9999999999999999999999 45555565542 24799999998876 554 89998998887643
|
|
| >PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.3e-35 Score=265.94 Aligned_cols=205 Identities=18% Similarity=0.116 Sum_probs=160.9
Q ss_pred ccEEEEccceEEcccc-----ccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCC-
Q 021362 75 IPVVEARCMDEVYDAL-----AQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP- 148 (313)
Q Consensus 75 m~~l~~~~l~~~y~~~-----~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~- 148 (313)
|++|+++||++.|++. .....+|+|+||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|.+.
T Consensus 1 ~~~l~~~nl~~~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---p~sG~i~~~g~~~~ 77 (268)
T PRK10419 1 MTLLNVSGLSHHYAHGGLSGKHQHQTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLES---PSQGNVSWRGEPLA 77 (268)
T ss_pred CceEEEeceEEEecCCccccccCceeeEeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCcEEEECCEecc
Confidence 5689999999999730 001239999999999999999999999999999999999999 9999999999753
Q ss_pred ----------CCeEEEEecCCCCCCcccCCcccChHHHHHhc-CCCCCccHHHHHHHHHHhhcC---CCccCCCCCCcCC
Q 021362 149 ----------PDVATVLPMDGFHLYLSQLDAMEDPKEAHARR-GAPWTFNPLLLLNCLKNLRNQ---GSVYAPSFDHGVG 214 (313)
Q Consensus 149 ----------~~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~-~~~~~~~~~~~~~~l~~l~~~---~~~~~~~LSgG~k 214 (313)
.+.++|++|++...+.+..++.+|+.+..... +........++.++++.++.. .+..+.+||+||+
T Consensus 78 ~~~~~~~~~~~~~i~~v~q~~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LS~Ge~ 157 (268)
T PRK10419 78 KLNRAQRKAFRRDIQMVFQDSISAVNPRKTVREIIREPLRHLLSLDKAERLARASEMLRAVDLDDSVLDKRPPQLSGGQL 157 (268)
T ss_pred ccChhHHHHHHhcEEEEEcChhhccCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHHHHHcCCChhHhhCCCccCChHHH
Confidence 23599999996322223478999887654321 222222344678888888753 3567779999999
Q ss_pred CcchhhhhhccCceEEEEcCCccccCh----hhHHHHHhhcc----ceEEEEcChHHHHH---HHh----hcccccCCch
Q 021362 215 DPVEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFD----EKWFIEVDLDTAMQ---RVL----KRHISTGKPP 279 (313)
Q Consensus 215 qRv~ia~al~~~ar~Li~d~~~lllDE----~~~~~l~~l~~----~~i~vtHd~~~~~~---rv~----griv~~G~~~ 279 (313)
||++||++++.++++|++|+|+..||. .+.+.|+++.+ ..|++|||++++.. |++ |++++.|++.
T Consensus 158 qrl~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiiivsH~~~~i~~~~d~i~~l~~G~i~~~g~~~ 237 (268)
T PRK10419 158 QRVCLARALAVEPKLLILDEAVSNLDLVLQAGVIRLLKKLQQQFGTACLFITHDLRLVERFCQRVMVMDNGQIVETQPVG 237 (268)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHHcCcEEEEEECCHHHHHHhCCEEEEEECCEEeeeCChh
Confidence 999999999999999999999999999 35566666543 24799999999875 554 8999999888
Q ss_pred HHH
Q 021362 280 DVA 282 (313)
Q Consensus 280 ev~ 282 (313)
++.
T Consensus 238 ~~~ 240 (268)
T PRK10419 238 DKL 240 (268)
T ss_pred hcc
Confidence 764
|
|
| >PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-35 Score=268.40 Aligned_cols=201 Identities=15% Similarity=0.136 Sum_probs=160.9
Q ss_pred EEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCC--------
Q 021362 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP-------- 148 (313)
Q Consensus 77 ~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~-------- 148 (313)
+|+++|+++.|++.. ...+|+++||+|++||+++|+|+||||||||+++|+|+++ |++|+|.++|.+.
T Consensus 4 ~l~~~~l~~~~~~~~-~~~~l~~v~l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~---~~~G~i~~~g~~i~~~~~~~~ 79 (277)
T PRK13642 4 ILEVENLVFKYEKES-DVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFE---EFEGKVKIDGELLTAENVWNL 79 (277)
T ss_pred eEEEEEEEEEcCCCC-cCeeeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC---CCCCEEEECCEECCcCCHHHH
Confidence 799999999997421 2238999999999999999999999999999999999999 9999999999653
Q ss_pred CCeEEEEecCCC-CCCcccCCcccChHHHHHhcCCCCCccHHHHHHHHHHhhc--CCCccCCCCCCcCCCcchhhhhhcc
Q 021362 149 PDVATVLPMDGF-HLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDILVGL 225 (313)
Q Consensus 149 ~~~i~~v~qd~~-~~~~~~ltv~e~~~~~~~~~~~~~~~~~~~~~~~l~~l~~--~~~~~~~~LSgG~kqRv~ia~al~~ 225 (313)
...++|++|++. .++ ..|+.+|+.+.....+.......+++.++++.++. ..+.++.+|||||+||++||++++.
T Consensus 80 ~~~i~~v~q~~~~~~~--~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~lAraL~~ 157 (277)
T PRK13642 80 RRKIGMVFQNPDNQFV--GATVEDDVAFGMENQGIPREEMIKRVDEALLAVNMLDFKTREPARLSGGQKQRVAVAGIIAL 157 (277)
T ss_pred hcceEEEEECHHHhhc--cCCHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHHHc
Confidence 235899999963 233 37999999876543333322223456778887773 3456677999999999999999999
Q ss_pred CceEEEEcCCccccCh----hhHHHHHhhcc----ceEEEEcChHHHHH--HHh----hcccccCCchHHHH
Q 021362 226 QHKVVIVDGNYLFLDG----GVWKDVSSMFD----EKWFIEVDLDTAMQ--RVL----KRHISTGKPPDVAK 283 (313)
Q Consensus 226 ~ar~Li~d~~~lllDE----~~~~~l~~l~~----~~i~vtHd~~~~~~--rv~----griv~~G~~~ev~~ 283 (313)
++++|++|+|+..||. .+++.|.++.+ ..+++|||++++.. |++ |++++.|+++++..
T Consensus 158 ~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiil~sH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 229 (277)
T PRK13642 158 RPEIIILDESTSMLDPTGRQEIMRVIHEIKEKYQLTVLSITHDLDEAASSDRILVMKAGEIIKEAAPSELFA 229 (277)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 9999999999999999 45555555543 24799999999865 554 99999999888764
|
|
| >PRK14237 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-34 Score=264.47 Aligned_cols=201 Identities=13% Similarity=0.093 Sum_probs=158.7
Q ss_pred cEEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhccc--CCCCceeecCCCCC-----
Q 021362 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKI--WPQKASSFDSQVKP----- 148 (313)
Q Consensus 76 ~~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~--~p~~G~i~~~g~~~----- 148 (313)
++|+++|+++.|+++. +|+|+||++.+||+++|+||||||||||+++|+|+++.. .|++|+|.++|.+.
T Consensus 19 ~~l~~~nl~~~~~~~~----il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~ 94 (267)
T PRK14237 19 IALSTKDLHVYYGKKE----AIKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGIDINRKEI 94 (267)
T ss_pred eEEEEeeEEEEECCee----eEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhccCccCCCCcceEEEECCEEcccccC
Confidence 3799999999998766 999999999999999999999999999999999998500 04799999998653
Q ss_pred -----CCeEEEEecCCCCCCcccCCcccChHHHHHhcCCCC-CccHHHHHHHHHHhhc------CCCccCCCCCCcCCCc
Q 021362 149 -----PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPW-TFNPLLLLNCLKNLRN------QGSVYAPSFDHGVGDP 216 (313)
Q Consensus 149 -----~~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~~-~~~~~~~~~~l~~l~~------~~~~~~~~LSgG~kqR 216 (313)
...++|++|++..+ . .|+.+|+.+.....+... ....+++.++++.++. ..+.++.+||+||+||
T Consensus 95 ~~~~~~~~i~~v~q~~~~~-~--~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~G~~qr 171 (267)
T PRK14237 95 NVYEMRKHIGMVFQRPNPF-A--KSIYENITFALERAGVKDKKVLDEIVETSLKQAALWDQVKDDLHKSALTLSGGQQQR 171 (267)
T ss_pred ChHHHhcceEEEecCCccc-c--ccHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCchhhhhhcCCcccCCHHHHHH
Confidence 23589999996543 2 599999988654333221 1223456677777764 2356677999999999
Q ss_pred chhhhhhccCceEEEEcCCccccCh----hhHHHHHhhcc--ceEEEEcChHHHHH---HHh----hcccccCCchHHHH
Q 021362 217 VEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFD--EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAK 283 (313)
Q Consensus 217 v~ia~al~~~ar~Li~d~~~lllDE----~~~~~l~~l~~--~~i~vtHd~~~~~~---rv~----griv~~G~~~ev~~ 283 (313)
++||++++.++++|++|+|+..||. .+.+.|.++.. ..|++|||++++.. |++ |++++.|++.++..
T Consensus 172 l~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 251 (267)
T PRK14237 172 LCIARAIAVKPDILLMDEPASALDPISTMQLEETMFELKKNYTIIIVTHNMQQAARASDYTAFFYLGDLIEYDKTRNIFT 251 (267)
T ss_pred HHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhcCEEEEEECCEEEEeCCHHHHhc
Confidence 9999999999999999999999999 45555555532 24799999999866 554 99999999888743
|
|
| >TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.1e-35 Score=263.29 Aligned_cols=201 Identities=15% Similarity=0.155 Sum_probs=158.2
Q ss_pred cEEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCC-----C--
Q 021362 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK-----P-- 148 (313)
Q Consensus 76 ~~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~-----~-- 148 (313)
++|+++|+++.|++.. +|+|+||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|.+ .
T Consensus 2 ~~l~~~~l~~~~~~~~----~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~~~~~~~~~ 74 (253)
T TIGR02323 2 PLLQVSGLSKSYGGGK----GCRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLA---PDHGTATYIMRSGAELELYQ 74 (253)
T ss_pred ceEEEeeeEEEeCCce----EeecceEEEeCCcEEEEECCCCCCHHHHHHHHhCCCC---CCCcEEEEeccccccccccc
Confidence 3699999999998765 8999999999999999999999999999999999999 999999999865 2
Q ss_pred ----------CCeEEEEecCCCCCCcccCCcccChHHHHHhcCC-CCCccHHHHHHHHHHhhcC---CCccCCCCCCcCC
Q 021362 149 ----------PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGA-PWTFNPLLLLNCLKNLRNQ---GSVYAPSFDHGVG 214 (313)
Q Consensus 149 ----------~~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~-~~~~~~~~~~~~l~~l~~~---~~~~~~~LSgG~k 214 (313)
.+.++|++|++.......+++.+|+.+....... ......+.+.++++.++.. .+..+.+|||||+
T Consensus 75 ~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~LSgG~~ 154 (253)
T TIGR02323 75 LSEAERRRLMRTEWGFVHQNPRDGLRMRVSAGANIGERLMAIGARHYGNIRAAAHDWLEEVEIDPTRIDDLPRAFSGGMQ 154 (253)
T ss_pred CCHHHHHHhhhcceEEEEeCcccccCccccHHHHHHHHHHHhcccchHHHHHHHHHHHHHcCCChhhhhcCchhcCHHHH
Confidence 1248999999643233346778888654322211 1112345677888888753 3557779999999
Q ss_pred CcchhhhhhccCceEEEEcCCccccCh----hhHHHHHhhcc----ceEEEEcChHHHHH---HHh----hcccccCCch
Q 021362 215 DPVEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFD----EKWFIEVDLDTAMQ---RVL----KRHISTGKPP 279 (313)
Q Consensus 215 qRv~ia~al~~~ar~Li~d~~~lllDE----~~~~~l~~l~~----~~i~vtHd~~~~~~---rv~----griv~~G~~~ 279 (313)
||++||++++.++++|++|+|+..||. .+++.|.++.+ ..|++|||++++.. |++ |++++.|+++
T Consensus 155 qrv~laral~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~vsH~~~~~~~~~d~~~~l~~G~i~~~~~~~ 234 (253)
T TIGR02323 155 QRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRDLGLAVIIVTHDLGVARLLAQRLLVMQQGRVVESGLTD 234 (253)
T ss_pred HHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEECCHH
Confidence 999999999999999999999999999 44555555533 24799999999876 554 8999889887
Q ss_pred HHHH
Q 021362 280 DVAK 283 (313)
Q Consensus 280 ev~~ 283 (313)
++..
T Consensus 235 ~~~~ 238 (253)
T TIGR02323 235 QVLD 238 (253)
T ss_pred HHhc
Confidence 7753
|
Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se. |
| >TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-35 Score=264.71 Aligned_cols=197 Identities=15% Similarity=0.126 Sum_probs=158.5
Q ss_pred EEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCC--------C
Q 021362 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP--------P 149 (313)
Q Consensus 78 l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~--------~ 149 (313)
|+++|+++.|++.. +|+++||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.+. .
T Consensus 2 l~~~~l~~~~~~~~----il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~---~~~G~i~~~g~~~~~~~~~~~~ 74 (256)
T TIGR03873 2 LRLSRVSWSAGGRL----IVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALR---PDAGTVDLAGVDLHGLSRRARA 74 (256)
T ss_pred ceEEeEEEEECCEE----EEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCC---CCCCEEEECCEEcccCCHHHHh
Confidence 67899999998766 9999999999999999999999999999999999999 9999999999653 2
Q ss_pred CeEEEEecCCCCCCcccCCcccChHHHHH-h---cCCCCCccHHHHHHHHHHhhc--CCCccCCCCCCcCCCcchhhhhh
Q 021362 150 DVATVLPMDGFHLYLSQLDAMEDPKEAHA-R---RGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDILV 223 (313)
Q Consensus 150 ~~i~~v~qd~~~~~~~~ltv~e~~~~~~~-~---~~~~~~~~~~~~~~~l~~l~~--~~~~~~~~LSgG~kqRv~ia~al 223 (313)
+.++|++|++..++ .+|+.+|+.+... . .+.+.....+++.++++.++. ..+.++.+||+||+||++||+++
T Consensus 75 ~~i~~~~q~~~~~~--~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al 152 (256)
T TIGR03873 75 RRVALVEQDSDTAV--PLTVRDVVALGRIPHRSLWAGDSPHDAAVVDRALARTELSHLADRDMSTLSGGERQRVHVARAL 152 (256)
T ss_pred hheEEecccCccCC--CCCHHHHHHhcchhhhhhccCCCHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHH
Confidence 35899999964333 4799999987521 1 111222234467788888874 34667789999999999999999
Q ss_pred ccCceEEEEcCCccccCh----hhHHHHHhhcc---ceEEEEcChHHHHH---HHh----hcccccCCchHHHH
Q 021362 224 GLQHKVVIVDGNYLFLDG----GVWKDVSSMFD---EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAK 283 (313)
Q Consensus 224 ~~~ar~Li~d~~~lllDE----~~~~~l~~l~~---~~i~vtHd~~~~~~---rv~----griv~~G~~~ev~~ 283 (313)
+.+++++++|+|+..||. .+.+.|+++.+ ..+++|||++++.. |++ |++++.|+++++..
T Consensus 153 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 226 (256)
T TIGR03873 153 AQEPKLLLLDEPTNHLDVRAQLETLALVRELAATGVTVVAALHDLNLAASYCDHVVVLDGGRVVAAGPPREVLT 226 (256)
T ss_pred hcCCCEEEEcCccccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCCEEEecCHHHhhC
Confidence 999999999999999999 44555555533 24799999999976 555 89999998887743
|
This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter. |
| >PRK14245 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-34 Score=261.63 Aligned_cols=198 Identities=14% Similarity=0.083 Sum_probs=158.1
Q ss_pred cEEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHH---hcccCC--CCceeecCCCCCC-
Q 021362 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRR---INKIWP--QKASSFDSQVKPP- 149 (313)
Q Consensus 76 ~~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl---~~~~~p--~~G~i~~~g~~~~- 149 (313)
++|+++|+++.|++.. +|+|+||+|++||+++|+||||||||||+++|+|+ ++ | ++|+|.++|.+..
T Consensus 2 ~~l~~~~~~~~~~~~~----~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~---~~~~~G~i~~~g~~~~~ 74 (250)
T PRK14245 2 VKIDARDVNFWYGDFH----ALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIP---ATRLEGEIRIDGRNIYD 74 (250)
T ss_pred cEEEEEEEEEEECCEe----EEeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhhhhcccC---CCCCceEEEECCEeccc
Confidence 4799999999998765 99999999999999999999999999999999997 33 4 5899999996532
Q ss_pred ---------CeEEEEecCCCCCCcccCCcccChHHHHHhcCCCC-CccHHHHHHHHHHhhcC------CCccCCCCCCcC
Q 021362 150 ---------DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPW-TFNPLLLLNCLKNLRNQ------GSVYAPSFDHGV 213 (313)
Q Consensus 150 ---------~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~~-~~~~~~~~~~l~~l~~~------~~~~~~~LSgG~ 213 (313)
+.++|++|++..+ . .|+.+|+.+.....+... ....+++.++++.++.. .+..+.+|||||
T Consensus 75 ~~~~~~~~~~~i~~v~q~~~~~-~--~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~ 151 (250)
T PRK14245 75 KGVQVDELRKNVGMVFQRPNPF-P--KSIFENVAYGLRVNGVKDNAFIRQRVEETLKGAALWDEVKDKLKESAFALSGGQ 151 (250)
T ss_pred ccccHHHHhhheEEEecCCccC-c--ccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCcchhhhhhCCcccCCHHH
Confidence 2489999996543 2 599999987654433221 12334567788877642 345667999999
Q ss_pred CCcchhhhhhccCceEEEEcCCccccCh----hhHHHHHhhcc--ceEEEEcChHHHHH---HHh----hcccccCCchH
Q 021362 214 GDPVEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFD--EKWFIEVDLDTAMQ---RVL----KRHISTGKPPD 280 (313)
Q Consensus 214 kqRv~ia~al~~~ar~Li~d~~~lllDE----~~~~~l~~l~~--~~i~vtHd~~~~~~---rv~----griv~~G~~~e 280 (313)
+||++||++++.++++|++|+|+..||. .+++.|+++.+ ..|++|||++++.. |++ |++++.|++++
T Consensus 152 ~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivtH~~~~~~~~~d~v~~l~~G~~~~~~~~~~ 231 (250)
T PRK14245 152 QQRLCIARAMAVSPSVLLMDEPASALDPISTAKVEELIHELKKDYTIVIVTHNMQQAARVSDKTAFFYMGEMVEYDDTKK 231 (250)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHhhCCEEEEEECCEEEEECCHHH
Confidence 9999999999999999999999999999 45555555532 24799999999866 655 89999999988
Q ss_pred HHH
Q 021362 281 VAK 283 (313)
Q Consensus 281 v~~ 283 (313)
+..
T Consensus 232 ~~~ 234 (250)
T PRK14245 232 IFT 234 (250)
T ss_pred Hhc
Confidence 854
|
|
| >PRK14253 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-34 Score=261.50 Aligned_cols=198 Identities=12% Similarity=0.075 Sum_probs=156.7
Q ss_pred ccEEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCC-----CCceeecCCCCC-
Q 021362 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWP-----QKASSFDSQVKP- 148 (313)
Q Consensus 75 m~~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p-----~~G~i~~~g~~~- 148 (313)
|++|+++|+++.|++.. +|+++||+|++||+++|+||||||||||+++|+|+++ | ++|+|.++|.+.
T Consensus 1 ~~~l~~~~l~~~~~~~~----~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---~~~~~~~~G~v~~~g~~~~ 73 (249)
T PRK14253 1 MNKFNIENLDLFYGENQ----ALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMND---LIEGVKITGKLTMDGEDIY 73 (249)
T ss_pred CCeEEEeccEEEECCee----eeecceEEecCCCEEEEECCCCCCHHHHHHHHHhhcc---cccCCCCceEEEECCEEcc
Confidence 56799999999998766 9999999999999999999999999999999999987 6 499999998643
Q ss_pred --------CCeEEEEecCCCCCCcccCCcccChHHHHHhcCCCC-CccHHHHHHHHHHhhc------CCCccCCCCCCcC
Q 021362 149 --------PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPW-TFNPLLLLNCLKNLRN------QGSVYAPSFDHGV 213 (313)
Q Consensus 149 --------~~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~~-~~~~~~~~~~l~~l~~------~~~~~~~~LSgG~ 213 (313)
...++|++|++..+ . .|+.+|+.+.....+... ....+++.++++.++. ..+..+.+|||||
T Consensus 74 ~~~~~~~~~~~i~~~~q~~~~~-~--~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~ 150 (249)
T PRK14253 74 GNIDVADLRIKVGMVFQKPNPF-P--MSIYENVAYGLRAQGIKDKKVLDEVVERSLRGAALWDEVKDRLKSHAFGLSGGQ 150 (249)
T ss_pred cccchHHHHhheeEEecCCCcC-c--ccHHHHHHhHHHhcCCCchHHHHHHHHHHHHHcCCchhhhHHhhcCcccCCHHH
Confidence 23589999996533 3 699999987644333221 1223445666666653 2345667999999
Q ss_pred CCcchhhhhhccCceEEEEcCCccccCh----hhHHHHHhhccc--eEEEEcChHHHHH---HHh----hcccccCCchH
Q 021362 214 GDPVEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFDE--KWFIEVDLDTAMQ---RVL----KRHISTGKPPD 280 (313)
Q Consensus 214 kqRv~ia~al~~~ar~Li~d~~~lllDE----~~~~~l~~l~~~--~i~vtHd~~~~~~---rv~----griv~~G~~~e 280 (313)
+||++||++++.++++|++|+|+..||. .+++.|+++.+. .|++||+++++.. |++ |++++.|++++
T Consensus 151 ~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~~d~i~~l~~G~i~~~g~~~~ 230 (249)
T PRK14253 151 QQRLCIARTIAMEPDVILMDEPTSALDPIATHKIEELMEELKKNYTIVIVTHSMQQARRISDRTAFFLMGELVEHDDTQV 230 (249)
T ss_pred HHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHH
Confidence 9999999999999999999999999999 445555555432 4799999999876 554 89999998877
Q ss_pred HH
Q 021362 281 VA 282 (313)
Q Consensus 281 v~ 282 (313)
+.
T Consensus 231 ~~ 232 (249)
T PRK14253 231 IF 232 (249)
T ss_pred HH
Confidence 64
|
|
| >PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.8e-35 Score=288.50 Aligned_cols=196 Identities=17% Similarity=0.152 Sum_probs=161.7
Q ss_pred cEEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCCC------
Q 021362 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPP------ 149 (313)
Q Consensus 76 ~~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~~------ 149 (313)
++|+++|+++.|++.. +|+|+||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|.+..
T Consensus 10 ~~l~~~~l~~~~~~~~----il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~---p~~G~i~~~g~~~~~~~~~~ 82 (510)
T PRK15439 10 PLLCARSISKQYSGVE----VLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVP---PDSGTLEIGGNPCARLTPAK 82 (510)
T ss_pred ceEEEEeEEEEeCCce----eeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCceEEEECCEECCCCCHHH
Confidence 4799999999998766 9999999999999999999999999999999999999 99999999986532
Q ss_pred ---CeEEEEecCCCCCCcccCCcccChHHHHHhcCCCCCccHHHHHHHHHHhhc--CCCccCCCCCCcCCCcchhhhhhc
Q 021362 150 ---DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDILVG 224 (313)
Q Consensus 150 ---~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~~~~~~~~~~~~l~~l~~--~~~~~~~~LSgG~kqRv~ia~al~ 224 (313)
..++|++|++..+. .+|+.||+.+.... .....+++.++++.++. ..++++.+|||||||||+||++++
T Consensus 83 ~~~~~i~~v~q~~~~~~--~~tv~e~l~~~~~~----~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~aL~ 156 (510)
T PRK15439 83 AHQLGIYLVPQEPLLFP--NLSVKENILFGLPK----RQASMQKMKQLLAALGCQLDLDSSAGSLEVADRQIVEILRGLM 156 (510)
T ss_pred HHhCCEEEEeccCccCC--CCcHHHHhhccccc----chHHHHHHHHHHHHcCCCccccCChhhCCHHHHHHHHHHHHHH
Confidence 34899999965443 48999998775321 12234567888888884 346677899999999999999999
Q ss_pred cCceEEEEcCCccccCh----hhHHHHHhhccc---eEEEEcChHHHHH---HHh----hcccccCCchHHHHH
Q 021362 225 LQHKVVIVDGNYLFLDG----GVWKDVSSMFDE---KWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAKW 284 (313)
Q Consensus 225 ~~ar~Li~d~~~lllDE----~~~~~l~~l~~~---~i~vtHd~~~~~~---rv~----griv~~G~~~ev~~~ 284 (313)
.++++|++|+|+..||. .+++.|+++.++ .|++|||++++.. |++ |+++..|+++++...
T Consensus 157 ~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 230 (510)
T PRK15439 157 RDSRILILDEPTASLTPAETERLFSRIRELLAQGVGIVFISHKLPEIRQLADRISVMRDGTIALSGKTADLSTD 230 (510)
T ss_pred cCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecChHHcCHH
Confidence 99999999999999999 455555555433 4699999999876 554 899989988877543
|
|
| >cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-35 Score=257.09 Aligned_cols=178 Identities=14% Similarity=0.104 Sum_probs=142.5
Q ss_pred EEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCCC------Ce
Q 021362 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPP------DV 151 (313)
Q Consensus 78 l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~~------~~ 151 (313)
|+++|+++.|++.. .|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.+.. +.
T Consensus 1 i~~~~l~~~~~~~~------~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~gl~~---~~~G~i~~~g~~~~~~~~~~~~ 71 (211)
T cd03298 1 VRLDKIRFSYGEQP------MHFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFET---PQSGRVLINGVDVTAAPPADRP 71 (211)
T ss_pred CEEEeEEEEeCCEe------cceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCceEEECCEEcCcCCHhHcc
Confidence 46899999997532 29999999999999999999999999999999999 99999999996532 35
Q ss_pred EEEEecCCCCCCcccCCcccChHHHHHhcCCCCCccHHHHHHHHHHhhcC--CCccCCCCCCcCCCcchhhhhhccCceE
Q 021362 152 ATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGLQHKV 229 (313)
Q Consensus 152 i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~~~~~LSgG~kqRv~ia~al~~~ar~ 229 (313)
++|++|++..++ .+|+.||+.+.............+++.++++.++.. .+.++.+||+|||||++||++++.++++
T Consensus 72 i~~~~q~~~~~~--~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~ia~al~~~p~l 149 (211)
T cd03298 72 VSMLFQENNLFA--HLTVEQNVGLGLSPGLKLTAEDRQAIEVALARVGLAGLEKRLPGELSGGERQRVALARVLVRDKPV 149 (211)
T ss_pred EEEEecccccCC--CCcHHHHHhcccccccCccHHHHHHHHHHHHHcCCHHHHhCCcccCCHHHHHHHHHHHHHhcCCCE
Confidence 899999975443 479999998754321111122345677888888743 4567779999999999999999999999
Q ss_pred EEEcCCccccCh----hhHHHHHhhcc----ceEEEEcChHHHHH
Q 021362 230 VIVDGNYLFLDG----GVWKDVSSMFD----EKWFIEVDLDTAMQ 266 (313)
Q Consensus 230 Li~d~~~lllDE----~~~~~l~~l~~----~~i~vtHd~~~~~~ 266 (313)
+++|+|+..||. .+++.|+++.+ ..+++|||++++..
T Consensus 150 lllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~ 194 (211)
T cd03298 150 LLLDEPFAALDPALRAEMLDLVLDLHAETKMTVLMVTHQPEDAKR 194 (211)
T ss_pred EEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHh
Confidence 999999999999 45566665542 24699999999865
|
Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.1e-35 Score=275.89 Aligned_cols=189 Identities=12% Similarity=0.100 Sum_probs=154.8
Q ss_pred cceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCC------------C
Q 021362 82 CMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP------------P 149 (313)
Q Consensus 82 ~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~------------~ 149 (313)
||+|.|++.. + ++||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.+. .
T Consensus 4 ~l~~~~~~~~-----~-~isl~i~~Gei~~l~G~nGsGKSTLl~~iaGl~~---p~~G~I~~~g~~i~~~~~~~~~~~~~ 74 (354)
T TIGR02142 4 RFSKRLGDFS-----L-DADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTR---PDEGEIVLNGRTLFDSRKGIFLPPEK 74 (354)
T ss_pred EEEEEECCEE-----E-EEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC---CCceEEEECCEECccCccccccchhh
Confidence 7899998643 4 8999999999999999999999999999999999 9999999998542 2
Q ss_pred CeEEEEecCCCCCCcccCCcccChHHHHHhcCCCCCccHHHHHHHHHHhhc--CCCccCCCCCCcCCCcchhhhhhccCc
Q 021362 150 DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDILVGLQH 227 (313)
Q Consensus 150 ~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~~~~~~~~~~~~l~~l~~--~~~~~~~~LSgG~kqRv~ia~al~~~a 227 (313)
+.++|++|++..++ .+|+.||+.+..... ......+++.++++.++. ..++++.+||||||||++||+|++.++
T Consensus 75 ~~i~~v~q~~~l~~--~~tv~enl~~~~~~~--~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGqkqRvalAraL~~~p 150 (354)
T TIGR02142 75 RRIGYVFQEARLFP--HLSVRGNLRYGMKRA--RPSERRISFERVIELLGIGHLLGRLPGRLSGGEKQRVAIGRALLSSP 150 (354)
T ss_pred CCeEEEecCCccCC--CCcHHHHHHHHhhcc--ChhHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHHcCC
Confidence 35899999965443 489999998865422 222234567888988884 346677899999999999999999999
Q ss_pred eEEEEcCCccccCh----hhHHHHHhhccc----eEEEEcChHHHHH---HHh----hcccccCCchHHHH
Q 021362 228 KVVIVDGNYLFLDG----GVWKDVSSMFDE----KWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAK 283 (313)
Q Consensus 228 r~Li~d~~~lllDE----~~~~~l~~l~~~----~i~vtHd~~~~~~---rv~----griv~~G~~~ev~~ 283 (313)
++|++|+|+..||. .+++.|+++.++ .+++|||++++.. |++ |+++..|+++++..
T Consensus 151 ~lllLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiiivtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 221 (354)
T TIGR02142 151 RLLLMDEPLAALDDPRKYEILPYLERLHAEFGIPILYVSHSLQEVLRLADRVVVLEDGRVAAAGPIAEVWA 221 (354)
T ss_pred CEEEEcCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEeCCEEEEECCHHHHhc
Confidence 99999999999999 456666666432 4799999999876 554 89999999888754
|
This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter. |
| >COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-34 Score=266.08 Aligned_cols=206 Identities=17% Similarity=0.181 Sum_probs=172.2
Q ss_pred ccEEEEccceEEcccc-------ccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCC
Q 021362 75 IPVVEARCMDEVYDAL-------AQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK 147 (313)
Q Consensus 75 m~~l~~~~l~~~y~~~-------~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~ 147 (313)
-++++++++...|.-+ ...+.+++++||++.+|+.+||+|.||||||||-.+|.+++ +.+|+|.|+|++
T Consensus 274 ~~ll~~~~v~v~f~i~~g~~~r~~~~~~AVd~isl~L~~gqTlGlVGESGSGKsTlG~allrL~----~s~G~I~F~G~~ 349 (534)
T COG4172 274 PVLLEVEDLRVWFPIKGGFLRRTVDHLRAVDGISLTLRRGQTLGLVGESGSGKSTLGLALLRLI----PSQGEIRFDGQD 349 (534)
T ss_pred CceEEecceEEEEecCCccccccchheEEeccceeEecCCCeEEEEecCCCCcchHHHHHHhhc----CcCceEEECCcc
Confidence 3589999999999532 23466999999999999999999999999999999999999 556999999976
Q ss_pred C-----------CCeEEEEecCCCCCCcccCCcccChHHHHHhcC--CCCCccHHHHHHHHHHhhc---CCCccCCCCCC
Q 021362 148 P-----------PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRG--APWTFNPLLLLNCLKNLRN---QGSVYAPSFDH 211 (313)
Q Consensus 148 ~-----------~~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~--~~~~~~~~~~~~~l~~l~~---~~~~~~~~LSg 211 (313)
. ++.+.+||||+|-..++.|||.+.+..++..++ ....+..+++.++|+.+|. ..++|+.++||
T Consensus 350 i~~~~~~~mrplR~~mQvVFQDPygSLsPRmtV~qII~EGL~vh~~~ls~~eR~~rv~~aL~EVGLDp~~r~RYPhEFSG 429 (534)
T COG4172 350 IDGLSRKEMRPLRRRMQVVFQDPYGSLSPRMTVGQIIEEGLRVHEPKLSAAERDQRVIEALEEVGLDPATRNRYPHEFSG 429 (534)
T ss_pred ccccChhhhhhhhhhceEEEeCCCCCCCcccCHHHHhhhhhhhcCCCCCHHHHHHHHHHHHHHcCCChhHhhcCCcccCc
Confidence 3 345899999999888889999999999987764 3345556778889999984 35678889999
Q ss_pred cCCCcchhhhhhccCceEEEEcCCccccCh----hhHHHHHhhccc----eEEEEcChHHHHH---HHh----hcccccC
Q 021362 212 GVGDPVEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFDE----KWFIEVDLDTAMQ---RVL----KRHISTG 276 (313)
Q Consensus 212 G~kqRv~ia~al~~~ar~Li~d~~~lllDE----~~~~~l~~l~~~----~i~vtHd~~~~~~---rv~----griv~~G 276 (313)
|||||++||+|++.+++.+++|+|+.-||- .+.+.++++.++ -+|||||+..+.. +++ |++|++|
T Consensus 430 GQRQRIAIARAliLkP~~i~LDEPTSALD~SVQaQvv~LLr~LQ~k~~LsYLFISHDL~VvrAl~~~viVm~~GkiVE~G 509 (534)
T COG4172 430 GQRQRIAIARALILKPELILLDEPTSALDRSVQAQVLDLLRDLQQKHGLSYLFISHDLAVVRALCHRVIVMRDGKIVEQG 509 (534)
T ss_pred chhhHHHHHHHHhcCCcEEEecCCchHhhHHHHHHHHHHHHHHHHHhCCeEEEEeccHHHHHHhhceEEEEeCCEEeeeC
Confidence 999999998888888888888888888888 455556665443 3699999999988 666 9999999
Q ss_pred CchHHHHH
Q 021362 277 KPPDVAKW 284 (313)
Q Consensus 277 ~~~ev~~~ 284 (313)
+.+++...
T Consensus 510 ~~~~if~~ 517 (534)
T COG4172 510 PTEAVFAN 517 (534)
T ss_pred CHHHHhcC
Confidence 99999654
|
|
| >TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-34 Score=257.92 Aligned_cols=190 Identities=19% Similarity=0.134 Sum_probs=156.0
Q ss_pred EEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCCC----CeEE
Q 021362 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPP----DVAT 153 (313)
Q Consensus 78 l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~~----~~i~ 153 (313)
|+++|+++.|++.. +|+++||++++||+++|+||||||||||+++|+|+++ |++|+|.++|.+.. +.++
T Consensus 1 l~l~~v~~~~~~~~----~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~~~~~~~~~~~~~~ 73 (223)
T TIGR03740 1 LETKNLSKRFGKQT----AVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILR---PTSGEIIFDGHPWTRKDLHKIG 73 (223)
T ss_pred CEEEeEEEEECCEE----EEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC---CCceEEEECCEeccccccccEE
Confidence 46899999998765 9999999999999999999999999999999999999 99999999986532 3689
Q ss_pred EEecCCCCCCcccCCcccChHHHHHhcCCCCCccHHHHHHHHHHhhcC--CCccCCCCCCcCCCcchhhhhhccCceEEE
Q 021362 154 VLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGLQHKVVI 231 (313)
Q Consensus 154 ~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~~~~~LSgG~kqRv~ia~al~~~ar~Li 231 (313)
|++|++..++ .+|+++|+.+.....+. ...++.++++.++.. .+..+.+||+||+||+++|++++.++++|+
T Consensus 74 ~~~q~~~~~~--~~t~~~~~~~~~~~~~~----~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rv~laral~~~p~lll 147 (223)
T TIGR03740 74 SLIESPPLYE--NLTARENLKVHTTLLGL----PDSRIDEVLNIVDLTNTGKKKAKQFSLGMKQRLGIAIALLNHPKLLI 147 (223)
T ss_pred EEcCCCCccc--cCCHHHHHHHHHHHcCC----CHHHHHHHHHHcCCcHHHhhhHhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 9999865443 47999999876543332 245677888888743 456677999999999999999999999999
Q ss_pred EcCCccccCh----hhHHHHHhhccc---eEEEEcChHHHHH---HHh----hcccccCCchH
Q 021362 232 VDGNYLFLDG----GVWKDVSSMFDE---KWFIEVDLDTAMQ---RVL----KRHISTGKPPD 280 (313)
Q Consensus 232 ~d~~~lllDE----~~~~~l~~l~~~---~i~vtHd~~~~~~---rv~----griv~~G~~~e 280 (313)
+|+|+..||. .+++.|.++.+. .+++|||++++.. |++ |+++..|++.+
T Consensus 148 lDEP~~~LD~~~~~~l~~~L~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~~ 210 (223)
T TIGR03740 148 LDEPTNGLDPIGIQELRELIRSFPEQGITVILSSHILSEVQQLADHIGIISEGVLGYQGKINK 210 (223)
T ss_pred ECCCccCCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHhcCEEEEEeCCEEEEecChhh
Confidence 9999999999 455555555432 4799999999876 554 88888887654
|
Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes. |
| >PRK09700 D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-35 Score=288.82 Aligned_cols=199 Identities=17% Similarity=0.141 Sum_probs=161.1
Q ss_pred cEEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCCC------
Q 021362 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPP------ 149 (313)
Q Consensus 76 ~~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~~------ 149 (313)
++|+++|+++.|++.. +|+|+||+|++||+++|+||||||||||+|+|+|+++ |++|+|.++|.+..
T Consensus 4 ~~l~~~~l~~~~~~~~----il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~---p~~G~i~~~g~~i~~~~~~~ 76 (510)
T PRK09700 4 PYISMAGIGKSFGPVH----ALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHE---PTKGTITINNINYNKLDHKL 76 (510)
T ss_pred ceEEEeeeEEEcCCeE----EeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCcC---CCccEEEECCEECCCCCHHH
Confidence 4799999999998766 9999999999999999999999999999999999999 99999999986531
Q ss_pred ---CeEEEEecCCCCCCcccCCcccChHHHHHh----cCCC---CCccHHHHHHHHHHhhc--CCCccCCCCCCcCCCcc
Q 021362 150 ---DVATVLPMDGFHLYLSQLDAMEDPKEAHAR----RGAP---WTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPV 217 (313)
Q Consensus 150 ---~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~----~~~~---~~~~~~~~~~~l~~l~~--~~~~~~~~LSgG~kqRv 217 (313)
..++|++|++..+. .+|+.||+.+.... ++.. .....+++.++++.++. ..++++.+|||||||||
T Consensus 77 ~~~~~i~~v~q~~~~~~--~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrv 154 (510)
T PRK09700 77 AAQLGIGIIYQELSVID--ELTVLENLYIGRHLTKKVCGVNIIDWREMRVRAAMMLLRVGLKVDLDEKVANLSISHKQML 154 (510)
T ss_pred HHHCCeEEEeecccccC--CCcHHHHhhhccccccccccccccCHHHHHHHHHHHHHHcCCCCCcccchhhCCHHHHHHH
Confidence 35899999965433 48999999764321 1211 11234567788888884 34667789999999999
Q ss_pred hhhhhhccCceEEEEcCCccccCh----hhHHHHHhhccc---eEEEEcChHHHHH---HHh----hcccccCCchHHHH
Q 021362 218 EDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFDE---KWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAK 283 (313)
Q Consensus 218 ~ia~al~~~ar~Li~d~~~lllDE----~~~~~l~~l~~~---~i~vtHd~~~~~~---rv~----griv~~G~~~ev~~ 283 (313)
+||++++.++++|++|+|+..||. .+++.|+++.++ .|++|||++++.. |++ |+++..|.++++..
T Consensus 155 ~ia~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 234 (510)
T PRK09700 155 EIAKTLMLDAKVIIMDEPTSSLTNKEVDYLFLIMNQLRKEGTAIVYISHKLAEIRRICDRYTVMKDGSSVCSGMVSDVSN 234 (510)
T ss_pred HHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEeeecchhhCCH
Confidence 999999999999999999999999 455555555433 4799999999986 555 89988898877643
|
|
| >TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-34 Score=254.77 Aligned_cols=176 Identities=12% Similarity=0.015 Sum_probs=144.4
Q ss_pred EccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCC-----------
Q 021362 80 ARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP----------- 148 (313)
Q Consensus 80 ~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~----------- 148 (313)
++|+++.|++.. +|+|+||++++||+++|+||||||||||+++|+|+++ |++|+|.++|.+.
T Consensus 1 i~~l~~~~~~~~----~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~~~~~~~~~~~~~ 73 (206)
T TIGR03608 1 LKNISKKFGDKI----ILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEK---FDSGQVYLNGKETPPLNSKKASKF 73 (206)
T ss_pred CcceEEEECCEE----EEeceEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCC---CCCeEEEECCEEccccchhhHHHH
Confidence 478999998766 9999999999999999999999999999999999999 9999999999762
Q ss_pred -CCeEEEEecCCCCCCcccCCcccChHHHHHhcCCCCCccHHHHHHHHHHhhc--CCCccCCCCCCcCCCcchhhhhhcc
Q 021362 149 -PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDILVGL 225 (313)
Q Consensus 149 -~~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~~~~~~~~~~~~l~~l~~--~~~~~~~~LSgG~kqRv~ia~al~~ 225 (313)
.+.++|++|++..++ .+|+.||+.+.....+.......+++.++++.++. ..++.+.+||+||+||++||++++.
T Consensus 74 ~~~~i~~~~q~~~~~~--~~t~~e~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qr~~laral~~ 151 (206)
T TIGR03608 74 RREKLGYLFQNFALIE--NETVEENLDLGLKYKKLSKKEKREKKKEALEKVGLNLKLKQKIYELSGGEQQRVALARAILK 151 (206)
T ss_pred HHhCeeEEecchhhcc--CCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCchhhhcCChhhCCHHHHHHHHHHHHHHc
Confidence 235899999965433 48999999886544333333345567888888874 3466778999999999999999999
Q ss_pred CceEEEEcCCccccCh----hhHHHHHhhccc---eEEEEcChHHH
Q 021362 226 QHKVVIVDGNYLFLDG----GVWKDVSSMFDE---KWFIEVDLDTA 264 (313)
Q Consensus 226 ~ar~Li~d~~~lllDE----~~~~~l~~l~~~---~i~vtHd~~~~ 264 (313)
++++|++|+|+..||. .+++.|+++.+. .+++||+++..
T Consensus 152 ~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~ 197 (206)
T TIGR03608 152 DPPLILADEPTGSLDPKNRDEVLDLLLELNDEGKTIIIVTHDPEVA 197 (206)
T ss_pred CCCEEEEeCCcCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH
Confidence 9999999999999999 555555555432 46999999864
|
A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins. |
| >PRK14272 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-34 Score=260.18 Aligned_cols=198 Identities=10% Similarity=0.084 Sum_probs=155.8
Q ss_pred EEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCC-----CceeecCCCCC---
Q 021362 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQ-----KASSFDSQVKP--- 148 (313)
Q Consensus 77 ~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~-----~G~i~~~g~~~--- 148 (313)
+|+++|+++.|++.. +|+|+||+|++|++++|+||||||||||+++|+|+++ |+ +|+|.++|.+.
T Consensus 4 ~l~~~~l~~~~~~~~----~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~---~~~~~~~~G~i~~~g~~~~~~ 76 (252)
T PRK14272 4 LLSAQDVNIYYGDKQ----AVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHD---LTPGARVTGRILLDGQDIYGP 76 (252)
T ss_pred EEEEeeeEEEECCEE----eeccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCC---CCcCCCCceeEEECCEEcccC
Confidence 699999999998765 9999999999999999999999999999999999987 64 89999998653
Q ss_pred -------CCeEEEEecCCCCCCcccCCcccChHHHHHhcCCCC-CccHHHHHHHHHHhhc------CCCccCCCCCCcCC
Q 021362 149 -------PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPW-TFNPLLLLNCLKNLRN------QGSVYAPSFDHGVG 214 (313)
Q Consensus 149 -------~~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~~-~~~~~~~~~~l~~l~~------~~~~~~~~LSgG~k 214 (313)
...++|++|++..+. .+|+.||+.+.....+... ....+.+.++++.++. ..+.++.+|||||+
T Consensus 77 ~~~~~~~~~~i~~~~q~~~~~~--~~t~~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~ 154 (252)
T PRK14272 77 RVDPVAMRRRVGMVFQKPNPFP--TMSVFDNVVAGLKLAGIRDRDHLMEVAERSLRGAALWDEVKDRLKTPATGLSGGQQ 154 (252)
T ss_pred ccCHHHhhceeEEEeccCccCc--CCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCcchhhhhhhcCCcccCCHHHH
Confidence 235899999965443 4799999987654332211 1122344455555532 23566779999999
Q ss_pred CcchhhhhhccCceEEEEcCCccccCh----hhHHHHHhhcc--ceEEEEcChHHHHH---HHh----hcccccCCchHH
Q 021362 215 DPVEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFD--EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDV 281 (313)
Q Consensus 215 qRv~ia~al~~~ar~Li~d~~~lllDE----~~~~~l~~l~~--~~i~vtHd~~~~~~---rv~----griv~~G~~~ev 281 (313)
||++||++++.++++|++|+|+..||. .+.+.|+++.+ ..+++|||++++.. |++ |++++.|+++++
T Consensus 155 qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 234 (252)
T PRK14272 155 QRLCIARALAVEPEILLMDEPTSALDPASTARIEDLMTDLKKVTTIIIVTHNMHQAARVSDTTSFFLVGDLVEHGPTDQL 234 (252)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 999999999999999999999999999 44555555542 24799999999886 554 899999998887
Q ss_pred HH
Q 021362 282 AK 283 (313)
Q Consensus 282 ~~ 283 (313)
..
T Consensus 235 ~~ 236 (252)
T PRK14272 235 FT 236 (252)
T ss_pred Hh
Confidence 54
|
|
| >TIGR01978 sufC FeS assembly ATPase SufC | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-34 Score=259.79 Aligned_cols=195 Identities=16% Similarity=0.027 Sum_probs=153.1
Q ss_pred EEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHh--cccCCCCceeecCCCCCC------
Q 021362 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRI--NKIWPQKASSFDSQVKPP------ 149 (313)
Q Consensus 78 l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~--~~~~p~~G~i~~~g~~~~------ 149 (313)
|+++|+++.|++.. +|+|+||+|++||+++|+||||||||||+++|+|++ + |++|+|.++|.+..
T Consensus 1 l~~~~l~~~~~~~~----~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~---~~~G~i~~~g~~~~~~~~~~ 73 (243)
T TIGR01978 1 LKIKDLHVSVEDKE----ILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYE---VTSGTILFKGQDLLELEPDE 73 (243)
T ss_pred CeEeeEEEEECCEE----EEeccceEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CCcceEEECCEecCCCCHHH
Confidence 47899999998765 999999999999999999999999999999999994 6 99999999996531
Q ss_pred ---CeEEEEecCCCCCCcccCCcccChHHHHHhcC-C------CCCccHHHHHHHHHHhhcC---CCccCC-CCCCcCCC
Q 021362 150 ---DVATVLPMDGFHLYLSQLDAMEDPKEAHARRG-A------PWTFNPLLLLNCLKNLRNQ---GSVYAP-SFDHGVGD 215 (313)
Q Consensus 150 ---~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~-~------~~~~~~~~~~~~l~~l~~~---~~~~~~-~LSgG~kq 215 (313)
..++|++|++..+. .+|+.+|+.+...... . ......+++.++++.++.. .++.+. +|||||||
T Consensus 74 ~~~~~i~~v~q~~~~~~--~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LS~G~~q 151 (243)
T TIGR01978 74 RARAGLFLAFQYPEEIP--GVSNLEFLRSALNARRSARGEEPLDLLDFLKLLKAKLALLGMDEEFLNRSVNEGFSGGEKK 151 (243)
T ss_pred hhccceEeeeccccccC--CcCHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHcCCchhhcccccccCcCHHHHH
Confidence 23789999965443 4899999987643221 1 1111234567788888753 345555 59999999
Q ss_pred cchhhhhhccCceEEEEcCCccccCh----hhHHHHHhhccc---eEEEEcChHHHHH----HHh----hcccccCCchH
Q 021362 216 PVEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFDE---KWFIEVDLDTAMQ----RVL----KRHISTGKPPD 280 (313)
Q Consensus 216 Rv~ia~al~~~ar~Li~d~~~lllDE----~~~~~l~~l~~~---~i~vtHd~~~~~~----rv~----griv~~G~~~e 280 (313)
|++||++++.++++|++|+|+..||. .+++.|+++.++ .+++|||++++.. |++ |++++.|++++
T Consensus 152 rl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~vsH~~~~~~~~~~d~i~~l~~G~i~~~g~~~~ 231 (243)
T TIGR01978 152 RNEILQMALLEPKLAILDEIDSGLDIDALKIVAEGINRLREPDRSFLIITHYQRLLNYIKPDYVHVLLDGRIVKSGDVEL 231 (243)
T ss_pred HHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCcEEEEEEecHHHHHhhcCCeEEEEeCCEEEEecCHHH
Confidence 99999999999999999999999999 555666665432 4799999999864 443 88888887765
Q ss_pred H
Q 021362 281 V 281 (313)
Q Consensus 281 v 281 (313)
+
T Consensus 232 ~ 232 (243)
T TIGR01978 232 A 232 (243)
T ss_pred h
Confidence 4
|
SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA. |
| >PRK14248 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-34 Score=261.31 Aligned_cols=201 Identities=12% Similarity=0.122 Sum_probs=156.6
Q ss_pred cEEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhccc--CCCCceeecCCCCC-----
Q 021362 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKI--WPQKASSFDSQVKP----- 148 (313)
Q Consensus 76 ~~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~--~p~~G~i~~~g~~~----- 148 (313)
++|+++|+++.|++.. +|+++||+|++||+++|+||||||||||+++|+|+++.. .|++|+|.++|.+.
T Consensus 20 ~~l~~~~l~~~~~~~~----il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~ 95 (268)
T PRK14248 20 HILEVKDLSIYYGEKR----AVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEGLNILDSNI 95 (268)
T ss_pred ceEEEEEEEEEeCCce----eeeceEEEEcCCCEEEEECCCCCCHHHHHHHHHhcccccCCCCCceEEEECCEEcccccc
Confidence 4799999999998766 999999999999999999999999999999999986200 15899999998653
Q ss_pred -----CCeEEEEecCCCCCCcccCCcccChHHHHHhcCCCC-CccHHHHHHHHHHhhcC------CCccCCCCCCcCCCc
Q 021362 149 -----PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPW-TFNPLLLLNCLKNLRNQ------GSVYAPSFDHGVGDP 216 (313)
Q Consensus 149 -----~~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~~-~~~~~~~~~~l~~l~~~------~~~~~~~LSgG~kqR 216 (313)
.+.++|++|++..+ . .|+.+|+.+.....+... ....+.+.+.++.++.. .+.++.+|||||+||
T Consensus 96 ~~~~~~~~i~~v~q~~~~~-~--~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qr 172 (268)
T PRK14248 96 NVVNLRREIGMVFQKPNPF-P--KSIYNNITHALKYAGERRKSVLDEIVEESLTKAALWDEVKDRLHSSALSLSGGQQQR 172 (268)
T ss_pred cHHHHhccEEEEecCCccC-c--ccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCCcchHHHHhcCcccCCHHHHHH
Confidence 23589999996543 3 499999987643332211 11234456667766532 345677999999999
Q ss_pred chhhhhhccCceEEEEcCCccccCh----hhHHHHHhhcc--ceEEEEcChHHHHH---HHh----hcccccCCchHHHH
Q 021362 217 VEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFD--EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAK 283 (313)
Q Consensus 217 v~ia~al~~~ar~Li~d~~~lllDE----~~~~~l~~l~~--~~i~vtHd~~~~~~---rv~----griv~~G~~~ev~~ 283 (313)
++||++++.++++|++|+|+..||. .+++.|+++.. ..|++|||++++.. |++ |++++.|+++++..
T Consensus 173 l~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~ 252 (268)
T PRK14248 173 LCIARTLAMKPAVLLLDEPASALDPISNAKIEELITELKEEYSIIIVTHNMQQALRVSDRTAFFLNGDLVEYDQTEQIFT 252 (268)
T ss_pred HHHHHHHhCCCCEEEEcCCCcccCHHHHHHHHHHHHHHhcCCEEEEEEeCHHHHHHhCCEEEEEECCEEEEeCCHHHHHh
Confidence 9999999999999999999999999 45555555543 24799999998876 655 89999998877743
|
|
| >PRK13538 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-34 Score=252.38 Aligned_cols=178 Identities=17% Similarity=0.085 Sum_probs=147.2
Q ss_pred EEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCC-------C
Q 021362 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP-------P 149 (313)
Q Consensus 77 ~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~-------~ 149 (313)
||+++|+++.|++.. +|+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.+. .
T Consensus 1 ~l~~~~l~~~~~~~~----~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~---p~~G~v~~~g~~~~~~~~~~~ 73 (204)
T PRK13538 1 MLEARNLACERDERI----LFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLAR---PDAGEVLWQGEPIRRQRDEYH 73 (204)
T ss_pred CeEEEEEEEEECCEE----EEecceEEECCCcEEEEECCCCCCHHHHHHHHhCCCC---CCCcEEEECCEEcccchHHhh
Confidence 489999999998766 9999999999999999999999999999999999999 9999999998653 2
Q ss_pred CeEEEEecCCCCCCcccCCcccChHHHHHhcCCCCCccHHHHHHHHHHhhc--CCCccCCCCCCcCCCcchhhhhhccCc
Q 021362 150 DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDILVGLQH 227 (313)
Q Consensus 150 ~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~~~~~~~~~~~~l~~l~~--~~~~~~~~LSgG~kqRv~ia~al~~~a 227 (313)
+.++|++|++..++ .+|+.||+.+....++. ...+++.++++.++. ..+.++.+|||||+||++||++++.++
T Consensus 74 ~~~~~~~~~~~~~~--~~tv~e~l~~~~~~~~~---~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~la~al~~~p 148 (204)
T PRK13538 74 QDLLYLGHQPGIKT--ELTALENLRFYQRLHGP---GDDEALWEALAQVGLAGFEDVPVRQLSAGQQRRVALARLWLTRA 148 (204)
T ss_pred hheEEeCCccccCc--CCcHHHHHHHHHHhcCc---cHHHHHHHHHHHcCCHHHhhCChhhcCHHHHHHHHHHHHHhcCC
Confidence 35889998854333 47999999887544321 344667888888884 346677799999999999999999999
Q ss_pred eEEEEcCCccccCh----hhHHHHHhhcc---ceEEEEcChHHHHH
Q 021362 228 KVVIVDGNYLFLDG----GVWKDVSSMFD---EKWFIEVDLDTAMQ 266 (313)
Q Consensus 228 r~Li~d~~~lllDE----~~~~~l~~l~~---~~i~vtHd~~~~~~ 266 (313)
+++++|+|+..||. .+++.|+++.+ ..+++|||++++..
T Consensus 149 ~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~i~~ 194 (204)
T PRK13538 149 PLWILDEPFTAIDKQGVARLEALLAQHAEQGGMVILTTHQDLPVAS 194 (204)
T ss_pred CEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEecChhhhcc
Confidence 99999999999999 45555555532 24799999998865
|
|
| >PRK14251 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-34 Score=258.68 Aligned_cols=199 Identities=14% Similarity=0.108 Sum_probs=156.6
Q ss_pred EEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcc--cCCCCceeecCCCCC------
Q 021362 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINK--IWPQKASSFDSQVKP------ 148 (313)
Q Consensus 77 ~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~--~~p~~G~i~~~g~~~------ 148 (313)
+|+++|+++.|+... +|+++||+|++||+++|+|+||||||||+++|+|+++. ..|++|+|.++|++.
T Consensus 4 ~l~~~~l~~~~~~~~----~l~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~v~i~g~~~~~~~~~ 79 (251)
T PRK14251 4 IISAKDVHLSYGNYE----ALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQNIYGSKMD 79 (251)
T ss_pred eEEEEeeEEEECCee----eeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhhccccccCCCcceEEEECCEEcccccch
Confidence 799999999998765 99999999999999999999999999999999999850 012799999999653
Q ss_pred ----CCeEEEEecCCCCCCcccCCcccChHHHHHhcCCCCC-ccHHHHHHHHHHhhcC------CCccCCCCCCcCCCcc
Q 021362 149 ----PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWT-FNPLLLLNCLKNLRNQ------GSVYAPSFDHGVGDPV 217 (313)
Q Consensus 149 ----~~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~~~-~~~~~~~~~l~~l~~~------~~~~~~~LSgG~kqRv 217 (313)
...++|++|++..+ . .|+.||+.+.....+.... ....++.++++.++.. .+..+.+|||||+||+
T Consensus 80 ~~~~~~~i~~~~q~~~~~-~--~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qr~ 156 (251)
T PRK14251 80 LVELRKEVGMVFQQPTPF-P--FSVYDNVAYGLKIAGVKDKELIDQRVEESLKQAAIWKETKDNLDRNAQAFSGGQQQRI 156 (251)
T ss_pred HHHhhccEEEEecCCccC-C--CcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCcchHHHhccChhhCCHHHHHHH
Confidence 23589999996533 3 6999999876544333211 1234566777777642 3556779999999999
Q ss_pred hhhhhhccCceEEEEcCCccccCh----hhHHHHHhhcc--ceEEEEcChHHHHH---HHh----hcccccCCchHHH
Q 021362 218 EDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFD--EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVA 282 (313)
Q Consensus 218 ~ia~al~~~ar~Li~d~~~lllDE----~~~~~l~~l~~--~~i~vtHd~~~~~~---rv~----griv~~G~~~ev~ 282 (313)
+||++++.++++|++|+|+..||. .+.+.|.++.. ..|++|||++++.. |++ |+++..|+++++.
T Consensus 157 ~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 234 (251)
T PRK14251 157 CIARALAVRPKVVLLDEPTSALDPISSSEIEETLMELKHQYTFIMVTHNLQQAGRISDQTAFLMNGDLIEAGPTEEMF 234 (251)
T ss_pred HHHHHHhcCCCEEEecCCCccCCHHHHHHHHHHHHHHHcCCeEEEEECCHHHHHhhcCEEEEEECCEEEEeCCHHHHH
Confidence 999999999999999999999999 44455555432 24799999999876 554 8999999887764
|
|
| >cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-34 Score=258.02 Aligned_cols=197 Identities=14% Similarity=0.156 Sum_probs=159.7
Q ss_pred EEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCC------CCe
Q 021362 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP------PDV 151 (313)
Q Consensus 78 l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~------~~~ 151 (313)
|+++|+++.|++.. +++++||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|.+. .+.
T Consensus 1 l~~~~l~~~~~~~~----il~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~g~~~---~~~G~i~~~g~~~~~~~~~~~~ 73 (232)
T cd03300 1 IELENVSKFYGGFV----ALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFET---PTSGEILLDGKDITNLPPHKRP 73 (232)
T ss_pred CEEEeEEEEeCCee----eeccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCC---CCceEEEECCEEcCcCChhhcc
Confidence 46899999998766 9999999999999999999999999999999999999 9999999998653 246
Q ss_pred EEEEecCCCCCCcccCCcccChHHHHHhcCCCCCccHHHHHHHHHHhhcC--CCccCCCCCCcCCCcchhhhhhccCceE
Q 021362 152 ATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGLQHKV 229 (313)
Q Consensus 152 i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~~~~~LSgG~kqRv~ia~al~~~ar~ 229 (313)
++|++|++..+. .+|+.+|+.+.....+........++.++++.++.. .+..+.+||+||+||++||++++.++++
T Consensus 74 i~~~~q~~~~~~--~~t~~~nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrl~laral~~~p~l 151 (232)
T cd03300 74 VNTVFQNYALFP--HLTVFENIAFGLRLKKLPKAEIKERVAEALDLVQLEGYANRKPSQLSGGQQQRVAIARALVNEPKV 151 (232)
T ss_pred eEEEecccccCC--CCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCE
Confidence 899999965443 479999998765544322222345667788887743 4567779999999999999999999999
Q ss_pred EEEcCCccccCh----hhHHHHHhhcc----ceEEEEcChHHHHH---HHh----hcccccCCchHHHH
Q 021362 230 VIVDGNYLFLDG----GVWKDVSSMFD----EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAK 283 (313)
Q Consensus 230 Li~d~~~lllDE----~~~~~l~~l~~----~~i~vtHd~~~~~~---rv~----griv~~G~~~ev~~ 283 (313)
+++|+|+..||. .+++.|.++.. ..+++||+++++.. |++ |++++.|+..++..
T Consensus 152 lllDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sh~~~~~~~~~d~i~~l~~G~~~~~~~~~~~~~ 220 (232)
T cd03300 152 LLLDEPLGALDLKLRKDMQLELKRLQKELGITFVFVTHDQEEALTMSDRIAVMNKGKIQQIGTPEEIYE 220 (232)
T ss_pred EEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEecCCHHHHHh
Confidence 999999999999 45555555543 24799999999866 554 89988888776654
|
PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14259 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-34 Score=262.14 Aligned_cols=200 Identities=12% Similarity=0.102 Sum_probs=157.4
Q ss_pred cEEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhccc--CCCCceeecCCCCC-----
Q 021362 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKI--WPQKASSFDSQVKP----- 148 (313)
Q Consensus 76 ~~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~--~p~~G~i~~~g~~~----- 148 (313)
++|+++||++.|++.. +|+|+||+|++||+++|+||||||||||+++|+|+++.. +|++|+|.++|.+.
T Consensus 12 ~~l~i~nl~~~~~~~~----il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~v~~~g~~i~~~~~ 87 (269)
T PRK14259 12 IIISLQNVTISYGTFE----AVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFDGTDLYDPRV 87 (269)
T ss_pred ceEEEEeEEEEECCEE----EEcceEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccC
Confidence 3799999999998766 999999999999999999999999999999999998610 14899999998653
Q ss_pred -----CCeEEEEecCCCCCCcccCCcccChHHHHHhcCCCCCccHHHHHHHHHHhhc------CCCccCCCCCCcCCCcc
Q 021362 149 -----PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN------QGSVYAPSFDHGVGDPV 217 (313)
Q Consensus 149 -----~~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~~~~~~~~~~~~l~~l~~------~~~~~~~~LSgG~kqRv 217 (313)
.+.++|++|++.. +. .|+.||+.+.....+.. ....+++.++++.++. ..+.++.+||+|||||+
T Consensus 88 ~~~~~~~~i~~v~q~~~l-~~--~tv~enl~~~~~~~~~~-~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrl 163 (269)
T PRK14259 88 DPVEVRRRIGMVFQQPNP-FP--KSIYENIAFGARINGYT-GDMDELVERSLRKAAVWDECKDKLNESGYSLSGGQQQRL 163 (269)
T ss_pred CHHHHhhceEEEccCCcc-ch--hhHHHHHhhhhhhcCCc-HHHHHHHHHHHHHhCCcchhhhhhCCCcccCCHHHHHHH
Confidence 1358999999643 33 49999998765443322 1223455667777753 24567779999999999
Q ss_pred hhhhhhccCceEEEEcCCccccCh----hhHHHHHhhcc--ceEEEEcChHHHHH---HHh---------------hccc
Q 021362 218 EDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFD--EKWFIEVDLDTAMQ---RVL---------------KRHI 273 (313)
Q Consensus 218 ~ia~al~~~ar~Li~d~~~lllDE----~~~~~l~~l~~--~~i~vtHd~~~~~~---rv~---------------griv 273 (313)
+||++++.++++|++|+|+..||. .+++.|.++.. ..|++|||++++.. |++ |+++
T Consensus 164 ~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~~~~~~~~~g~~g~~~ 243 (269)
T PRK14259 164 CIARTIAIEPEVILMDEPCSALDPISTLKIEETMHELKKNFTIVIVTHNMQQAVRVSDMTAFFNAEEVEGGSGGKVGYLV 243 (269)
T ss_pred HHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEeccccccccccccceEE
Confidence 999999999999999999999999 45556655543 24799999999876 432 3578
Q ss_pred ccCCchHHHH
Q 021362 274 STGKPPDVAK 283 (313)
Q Consensus 274 ~~G~~~ev~~ 283 (313)
+.|++.++..
T Consensus 244 ~~~~~~~~~~ 253 (269)
T PRK14259 244 EFNETKKIFN 253 (269)
T ss_pred EeCCHHHHHh
Confidence 8899888865
|
|
| >PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-34 Score=286.53 Aligned_cols=204 Identities=15% Similarity=0.158 Sum_probs=161.1
Q ss_pred cEEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCC-----CCceeecCCCCC--
Q 021362 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWP-----QKASSFDSQVKP-- 148 (313)
Q Consensus 76 ~~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p-----~~G~i~~~g~~~-- 148 (313)
+||+++|+++.|++......+|+++||+|++||+++|+||||||||||+|+|+|+++ | ++|+|.++|.+.
T Consensus 4 ~~l~~~~l~~~~~~~~~~~~~l~~isl~i~~Ge~~~iiG~nGsGKSTLl~~i~G~~~---~~~~~~~~G~i~~~g~~i~~ 80 (529)
T PRK15134 4 PLLAIENLSVAFRQQQTVRTVVNDVSLQIEAGETLALVGESGSGKSVTALSILRLLP---SPPVVYPSGDIRFHGESLLH 80 (529)
T ss_pred ceEEEeceEEEecCCCCceeeeeceEEEEeCCCEEEEECCCCCcHHHHHHHHhcCCC---CCcCCccceEEEECCEeccc
Confidence 479999999999631111239999999999999999999999999999999999997 6 799999998652
Q ss_pred ----------CCeEEEEecCCCCCCcccCCcccChHHHHHh-cCCCCCccHHHHHHHHHHhhcC-----CCccCCCCCCc
Q 021362 149 ----------PDVATVLPMDGFHLYLSQLDAMEDPKEAHAR-RGAPWTFNPLLLLNCLKNLRNQ-----GSVYAPSFDHG 212 (313)
Q Consensus 149 ----------~~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~-~~~~~~~~~~~~~~~l~~l~~~-----~~~~~~~LSgG 212 (313)
.+.++|++|++.....+.+++.+++.+.... .+.+.....+++.++++.++.. .++++.+||||
T Consensus 81 ~~~~~~~~~~~~~ig~v~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~LSgG 160 (529)
T PRK15134 81 ASEQTLRGVRGNKIAMIFQEPMVSLNPLHTLEKQLYEVLSLHRGMRREAARGEILNCLDRVGIRQAAKRLTDYPHQLSGG 160 (529)
T ss_pred CCHHHHHHHhcCceEEEecCchhhcCchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHHHHhhCCcccCHH
Confidence 1358999999642222346888888765432 2333333456778899998853 25678899999
Q ss_pred CCCcchhhhhhccCceEEEEcCCccccCh----hhHHHHHhhccc----eEEEEcChHHHHH---HHh----hcccccCC
Q 021362 213 VGDPVEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFDE----KWFIEVDLDTAMQ---RVL----KRHISTGK 277 (313)
Q Consensus 213 ~kqRv~ia~al~~~ar~Li~d~~~lllDE----~~~~~l~~l~~~----~i~vtHd~~~~~~---rv~----griv~~G~ 277 (313)
|||||+||+|++.++++|++|+|+..||. .+++.|+++.++ .|+||||++.+.. |++ |++++.|.
T Consensus 161 e~qrv~iAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~dri~~l~~G~i~~~g~ 240 (529)
T PRK15134 161 ERQRVMIAMALLTRPELLIADEPTTALDVSVQAQILQLLRELQQELNMGLLFITHNLSIVRKLADRVAVMQNGRCVEQNR 240 (529)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHHHHHhcCCeEEEEcCcHHHHHHhcCEEEEEECCEEEEeCC
Confidence 99999999999999999999999999999 555666665432 4799999999876 665 89988888
Q ss_pred chHHH
Q 021362 278 PPDVA 282 (313)
Q Consensus 278 ~~ev~ 282 (313)
++++.
T Consensus 241 ~~~~~ 245 (529)
T PRK15134 241 AATLF 245 (529)
T ss_pred HHHHh
Confidence 87774
|
|
| >PRK14275 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-34 Score=264.24 Aligned_cols=203 Identities=10% Similarity=0.085 Sum_probs=159.0
Q ss_pred CccEEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhc--ccCCCCceeecCCCCC---
Q 021362 74 EIPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN--KIWPQKASSFDSQVKP--- 148 (313)
Q Consensus 74 ~m~~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~--~~~p~~G~i~~~g~~~--- 148 (313)
..++|+++|+++.|++.. +|+|+||+|++||+++|+||||||||||+++|+|+.+ ..+|++|+|.++|.+.
T Consensus 36 ~~~~l~~~~l~~~~~~~~----il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~~~p~~~~~G~I~~~g~~i~~~ 111 (286)
T PRK14275 36 GKPHVVAKNFSIYYGEFE----AVKKVNADILSKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGEDIYGK 111 (286)
T ss_pred CceEEEEeeeEEEECCEE----EEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCCceEEEECCEEhhhc
Confidence 345799999999998765 9999999999999999999999999999999999852 0013999999998542
Q ss_pred -------CCeEEEEecCCCCCCcccCCcccChHHHHHhcCCCC-CccHHHHHHHHHHhhc------CCCccCCCCCCcCC
Q 021362 149 -------PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPW-TFNPLLLLNCLKNLRN------QGSVYAPSFDHGVG 214 (313)
Q Consensus 149 -------~~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~~-~~~~~~~~~~l~~l~~------~~~~~~~~LSgG~k 214 (313)
.+.++|++|++..+ . .|+.||+.+.....+... ....+++.++++.++. ..+.++.+|||||+
T Consensus 112 ~~~~~~~~~~i~~v~q~~~l~-~--~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~ 188 (286)
T PRK14275 112 FTDEVLLRKKIGMVFQKPNPF-P--KSIFDNIAYGPRLHGINDKKQLEEIVEKSLRKAALWDEVSDRLDKNALGLSGGQQ 188 (286)
T ss_pred ccchHHhhhcEEEECCCCCCC-c--cCHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHhCCccchhhHhhCChhhCCHHHH
Confidence 23589999996543 3 499999988654433321 1123456667777653 23556779999999
Q ss_pred CcchhhhhhccCceEEEEcCCccccCh----hhHHHHHhhcc--ceEEEEcChHHHHH---HHh----hcccccCCchHH
Q 021362 215 DPVEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFD--EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDV 281 (313)
Q Consensus 215 qRv~ia~al~~~ar~Li~d~~~lllDE----~~~~~l~~l~~--~~i~vtHd~~~~~~---rv~----griv~~G~~~ev 281 (313)
||++||++++.++++|++|+|+..||. .+++.|+++.. ..|++|||++++.. |++ |+++..|++.++
T Consensus 189 qrv~LAraL~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~~~tvIivsH~~~~~~~~~d~i~~L~~G~i~~~g~~~~~ 268 (286)
T PRK14275 189 QRLCVARTLAVEPEILLLDEPTSALDPKATAKIEDLIQELRGSYTIMIVTHNMQQASRVSDYTMFFYEGVLVEHAPTAQL 268 (286)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 999999999999999999999999999 45555555543 24799999999876 554 899999998887
Q ss_pred HH
Q 021362 282 AK 283 (313)
Q Consensus 282 ~~ 283 (313)
..
T Consensus 269 ~~ 270 (286)
T PRK14275 269 FT 270 (286)
T ss_pred Hh
Confidence 54
|
|
| >PRK15056 manganese/iron transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-34 Score=263.73 Aligned_cols=199 Identities=12% Similarity=0.053 Sum_probs=154.9
Q ss_pred EEEEccceEEcc-ccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCC-----CC
Q 021362 77 VVEARCMDEVYD-ALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP-----PD 150 (313)
Q Consensus 77 ~l~~~~l~~~y~-~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~-----~~ 150 (313)
+|+++|+++.|+ +.. +|+|+||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|.+. ..
T Consensus 6 ~l~~~~l~~~~~~~~~----il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~---p~~G~i~~~g~~i~~~~~~~ 78 (272)
T PRK15056 6 GIVVNDVTVTWRNGHT----ALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVR---LASGKISILGQPTRQALQKN 78 (272)
T ss_pred eEEEEeEEEEecCCcE----EEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCceEEEECCEEhHHhhccc
Confidence 699999999996 444 9999999999999999999999999999999999999 9999999999653 23
Q ss_pred eEEEEecCCCCCCcccCCcccChHHHHHh-cC---CCCCccHHHHHHHHHHhhc--CCCccCCCCCCcCCCcchhhhhhc
Q 021362 151 VATVLPMDGFHLYLSQLDAMEDPKEAHAR-RG---APWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDILVG 224 (313)
Q Consensus 151 ~i~~v~qd~~~~~~~~ltv~e~~~~~~~~-~~---~~~~~~~~~~~~~l~~l~~--~~~~~~~~LSgG~kqRv~ia~al~ 224 (313)
.++|++|++........++.+++.+.... .+ .+.....+++.++++.++. ..+.++.+|||||+||++||++++
T Consensus 79 ~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrv~laraL~ 158 (272)
T PRK15056 79 LVAYVPQSEEVDWSFPVLVEDVVMMGRYGHMGWLRRAKKRDRQIVTAALARVDMVEFRHRQIGELSGGQKKRVFLARAIA 158 (272)
T ss_pred eEEEeccccccccCCCcchhhheecccccccccccCCCHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHh
Confidence 58999998643221124577776543210 11 1112234456778888874 346677899999999999999999
Q ss_pred cCceEEEEcCCccccCh----hhHHHHHhhccc---eEEEEcChHHHHH---HHh---hcccccCCchHHH
Q 021362 225 LQHKVVIVDGNYLFLDG----GVWKDVSSMFDE---KWFIEVDLDTAMQ---RVL---KRHISTGKPPDVA 282 (313)
Q Consensus 225 ~~ar~Li~d~~~lllDE----~~~~~l~~l~~~---~i~vtHd~~~~~~---rv~---griv~~G~~~ev~ 282 (313)
.++++|++|+|+..||. .+.+.|.++.++ .|++|||++++.. |++ |+++..|+++++.
T Consensus 159 ~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~g~tviivsH~~~~~~~~~d~v~~~~G~i~~~g~~~~~~ 229 (272)
T PRK15056 159 QQGQVILLDEPFTGVDVKTEARIISLLRELRDEGKTMLVSTHNLGSVTEFCDYTVMVKGTVLASGPTETTF 229 (272)
T ss_pred cCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEECCEEEeecCHHhcc
Confidence 99999999999999999 455555555432 4799999998876 544 8988889888764
|
|
| >TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-34 Score=253.94 Aligned_cols=189 Identities=14% Similarity=0.100 Sum_probs=149.5
Q ss_pred EEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCC------CCe
Q 021362 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP------PDV 151 (313)
Q Consensus 78 l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~------~~~ 151 (313)
++++|+++.|+. .+.++||++++|++++|+||||||||||+++|+|+++ |++|+|.++|.+. ...
T Consensus 1 ~~~~~l~~~~~~------~~~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~~~~~~~~~~~ 71 (213)
T TIGR01277 1 LALDKVRYEYEH------LPMEFDLNVADGEIVAIMGPSGAGKSTLLNLIAGFIE---PASGSIKVNDQSHTGLAPYQRP 71 (213)
T ss_pred CeEEeeeEEeCC------cceeeEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCC---CCCcEEEECCEEcccCChhccc
Confidence 468999999973 5679999999999999999999999999999999999 9999999999653 245
Q ss_pred EEEEecCCCCCCcccCCcccChHHHHHhcCCCCCccHHHHHHHHHHhhc--CCCccCCCCCCcCCCcchhhhhhccCceE
Q 021362 152 ATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDILVGLQHKV 229 (313)
Q Consensus 152 i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~~~~~~~~~~~~l~~l~~--~~~~~~~~LSgG~kqRv~ia~al~~~ar~ 229 (313)
++|++|++..+. .+|+.||+.+.............+++.++++.++. ..++.+.+||+||+||++||++++.++++
T Consensus 72 i~~v~q~~~~~~--~~t~~en~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~l 149 (213)
T TIGR01277 72 VSMLFQENNLFA--HLTVRQNIGLGLHPGLKLNAEQQEKVVDAAQQVGIADYLDRLPEQLSGGQRQRVALARCLVRPNPI 149 (213)
T ss_pred eEEEeccCccCC--CCcHHHHHHhHhhccCCccHHHHHHHHHHHHHcCcHHHhhCCcccCCHHHHHHHHHHHHHhcCCCE
Confidence 899999975443 47999999875432111111234567778888874 34566779999999999999999999999
Q ss_pred EEEcCCccccCh----hhHHHHHhhcc----ceEEEEcChHHHHH---HHh----hcccccCC
Q 021362 230 VIVDGNYLFLDG----GVWKDVSSMFD----EKWFIEVDLDTAMQ---RVL----KRHISTGK 277 (313)
Q Consensus 230 Li~d~~~lllDE----~~~~~l~~l~~----~~i~vtHd~~~~~~---rv~----griv~~G~ 277 (313)
+++|+|+..||. .+++.|.++.+ ..+++|||++++.. +++ |++++.|.
T Consensus 150 lllDEPt~~LD~~~~~~~~~~l~~~~~~~~~tii~vsh~~~~~~~~~d~v~~l~~g~i~~~~~ 212 (213)
T TIGR01277 150 LLLDEPFSALDPLLREEMLALVKQLCSERQRTLLMVTHHLSDARAIASQIAVVSQGKIKVVSD 212 (213)
T ss_pred EEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCeEEEEECCeEEEecC
Confidence 999999999999 45556665543 24799999998765 544 77766653
|
This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found. |
| >COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-34 Score=255.96 Aligned_cols=176 Identities=17% Similarity=0.207 Sum_probs=145.3
Q ss_pred ccEEEEccceEEcccccc-----ccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCCC
Q 021362 75 IPVVEARCMDEVYDALAQ-----RLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPP 149 (313)
Q Consensus 75 m~~l~~~~l~~~y~~~~~-----~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~~ 149 (313)
+++++++||+|.|..... .+.+++||||+|++||++||+|+||||||||.|+|.||++ |++|+|+++|++..
T Consensus 2 ~~ll~v~~l~k~f~~~~~~~~~~~v~avd~Vsf~i~~ge~~glVGESG~GKSTlgr~i~~L~~---pt~G~i~f~g~~i~ 78 (268)
T COG4608 2 EPLLEVKNLKKYFPVGKGFGKKRYVKAVDGVSFSIKEGETLGLVGESGCGKSTLGRLILGLEE---PTSGEILFEGKDIT 78 (268)
T ss_pred CceEEEeccEEEEecccccCcccceEEecceeEEEcCCCEEEEEecCCCCHHHHHHHHHcCcC---CCCceEEEcCcchh
Confidence 458999999999964321 2469999999999999999999999999999999999999 99999999987622
Q ss_pred CeEEEEecCCCCCCcccCCcccChHHHHHhcCCCCCccHHHHHHHHHHhhc---CCCccCCCCCCcCCCcchhhhhhccC
Q 021362 150 DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN---QGSVYAPSFDHGVGDPVEDDILVGLQ 226 (313)
Q Consensus 150 ~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~~~~~~~~~~~~l~~l~~---~~~~~~~~LSgG~kqRv~ia~al~~~ 226 (313)
. ++ .....+++.++|+.++. ...+++.+|||||+||++||+|++.+
T Consensus 79 ~----------------~~---------------~~~~~~~v~elL~~Vgl~~~~~~ryPhelSGGQrQRi~IARALal~ 127 (268)
T COG4608 79 K----------------LS---------------KEERRERVLELLEKVGLPEEFLYRYPHELSGGQRQRIGIARALALN 127 (268)
T ss_pred h----------------cc---------------hhHHHHHHHHHHHHhCCCHHHhhcCCcccCchhhhhHHHHHHHhhC
Confidence 1 11 22345678899999984 35678889999999999999999999
Q ss_pred ceEEEEcCCccccCh----hhHHHHHhhccc----eEEEEcChHHHHH---HHh----hcccccCCchHHHHH
Q 021362 227 HKVVIVDGNYLFLDG----GVWKDVSSMFDE----KWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAKW 284 (313)
Q Consensus 227 ar~Li~d~~~lllDE----~~~~~l~~l~~~----~i~vtHd~~~~~~---rv~----griv~~G~~~ev~~~ 284 (313)
+.+++.|+++..||- .++..+.++.++ .+|||||+..+.. |++ |++++.|+.+++..+
T Consensus 128 P~liV~DEpvSaLDvSiqaqIlnLL~dlq~~~~lt~lFIsHDL~vv~~isdri~VMy~G~iVE~g~~~~~~~~ 200 (268)
T COG4608 128 PKLIVADEPVSALDVSVQAQILNLLKDLQEELGLTYLFISHDLSVVRYISDRIAVMYLGKIVEIGPTEEVFSN 200 (268)
T ss_pred CcEEEecCchhhcchhHHHHHHHHHHHHHHHhCCeEEEEEEEHHhhhhhcccEEEEecCceeEecCHHHHhhC
Confidence 999999999999998 344444444433 3699999999998 665 999999999998653
|
|
| >COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-34 Score=278.88 Aligned_cols=194 Identities=15% Similarity=0.136 Sum_probs=164.6
Q ss_pred ccEEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCCC-----
Q 021362 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPP----- 149 (313)
Q Consensus 75 m~~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~~----- 149 (313)
+++++++|++|+|++.. +|++|||++.+||+++|+|.||||||||+|+|+|.++ |++|+|.++|+...
T Consensus 6 ~~ll~~~~i~K~FggV~----AL~~v~l~v~~GEV~aL~GeNGAGKSTLmKiLsGv~~---p~~G~I~~~G~~~~~~sp~ 78 (500)
T COG1129 6 PPLLELRGISKSFGGVK----ALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYP---PDSGEILIDGKPVAFSSPR 78 (500)
T ss_pred cceeeeecceEEcCCce----eeccceeEEeCceEEEEecCCCCCHHHHHHHHhCccc---CCCceEEECCEEccCCCHH
Confidence 45899999999999988 9999999999999999999999999999999999999 99999999997632
Q ss_pred ----CeEEEEecCCCCCCcccCCcccChHHHHHhcC----CCCCccHHHHHHHHHHhhc--CCCccCCCCCCcCCCcchh
Q 021362 150 ----DVATVLPMDGFHLYLSQLDAMEDPKEAHARRG----APWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVED 219 (313)
Q Consensus 150 ----~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~----~~~~~~~~~~~~~l~~l~~--~~~~~~~~LSgG~kqRv~i 219 (313)
.-|.+|+|+....+ +|||.||+.++..... ..+.....++.++|+.++. ..+..+.+||.||||.|+|
T Consensus 79 ~A~~~GI~~V~QEl~L~p--~LsVaeNifLgre~~~~~g~id~~~m~~~A~~~l~~lg~~~~~~~~v~~LsiaqrQ~VeI 156 (500)
T COG1129 79 DALAAGIATVHQELSLVP--NLSVAENIFLGREPTRRFGLIDRKAMRRRARELLARLGLDIDPDTLVGDLSIAQRQMVEI 156 (500)
T ss_pred HHHhCCcEEEeechhccC--CccHHHHhhcccccccCCCccCHHHHHHHHHHHHHHcCCCCChhhhhhhCCHHHHHHHHH
Confidence 23889999966554 5999999987654322 2233445567788888874 3666788999999999999
Q ss_pred hhhhccCceEEEEcCCccccCh----hhHHHHHhhccce---EEEEcChHHHHH---HHh----hcccccCC
Q 021362 220 DILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFDEK---WFIEVDLDTAMQ---RVL----KRHISTGK 277 (313)
Q Consensus 220 a~al~~~ar~Li~d~~~lllDE----~~~~~l~~l~~~~---i~vtHd~~~~~~---rv~----griv~~G~ 277 (313)
|+|+..++++||+|+|+.-|++ .+++.++++.+++ |||||.++++.+ |+. |+.+..++
T Consensus 157 ArAl~~~arllIlDEPTaaLt~~E~~~Lf~~ir~Lk~~Gv~ii~ISHrl~Ei~~i~DritVlRDG~~v~~~~ 228 (500)
T COG1129 157 ARALSFDARVLILDEPTAALTVKETERLFDLIRRLKAQGVAIIYISHRLDEVFEIADRITVLRDGRVVGTRP 228 (500)
T ss_pred HHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCcHHHHHHhcCEEEEEeCCEEeeecc
Confidence 9999999999999999999999 6788888887764 699999999998 554 88887665
|
|
| >PRK13547 hmuV hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-34 Score=264.69 Aligned_cols=198 Identities=17% Similarity=0.130 Sum_probs=157.8
Q ss_pred EEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCC--------CceeecCCCCC
Q 021362 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQ--------KASSFDSQVKP 148 (313)
Q Consensus 77 ~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~--------~G~i~~~g~~~ 148 (313)
||+++|+++.|++.. +|+++||+|++|++++|+||||||||||+++|+|+++ |+ +|+|.++|.+.
T Consensus 1 ml~~~nl~~~~~~~~----il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~laG~~~---p~~~~~~~~~~G~i~~~g~~~ 73 (272)
T PRK13547 1 MLTADHLHVARRHRA----ILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLT---GGGAPRGARVTGDVTLNGEPL 73 (272)
T ss_pred CeEEEEEEEEECCEe----EEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CcccccccCCceEEEECCEEc
Confidence 489999999998766 9999999999999999999999999999999999998 88 99999999653
Q ss_pred C--------CeEEEEecCCCCCCcccCCcccChHHHHHhc----CCCCCccHHHHHHHHHHhhc--CCCccCCCCCCcCC
Q 021362 149 P--------DVATVLPMDGFHLYLSQLDAMEDPKEAHARR----GAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVG 214 (313)
Q Consensus 149 ~--------~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~----~~~~~~~~~~~~~~l~~l~~--~~~~~~~~LSgG~k 214 (313)
. +.++|++|++..++. +|+.||+.+..... +.......+.+.++++.++. ..++++.+|||||+
T Consensus 74 ~~~~~~~~~~~~~~v~q~~~~~~~--~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~ 151 (272)
T PRK13547 74 AAIDAPRLARLRAVLPQAAQPAFA--FSAREIVLLGRYPHARRAGALTHRDGEIAWQALALAGATALVGRDVTTLSGGEL 151 (272)
T ss_pred ccCCHHHHHhhcEEecccCCCCCC--CcHHHHHhhcccccccccccCCHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHH
Confidence 2 247999999654343 79999997753211 11112234456778888874 34667789999999
Q ss_pred Ccchhhhhhc---------cCceEEEEcCCccccCh----hhHHHHHhhccc----eEEEEcChHHHHH---HHh----h
Q 021362 215 DPVEDDILVG---------LQHKVVIVDGNYLFLDG----GVWKDVSSMFDE----KWFIEVDLDTAMQ---RVL----K 270 (313)
Q Consensus 215 qRv~ia~al~---------~~ar~Li~d~~~lllDE----~~~~~l~~l~~~----~i~vtHd~~~~~~---rv~----g 270 (313)
||++||++++ .++++|++|+|+..||. .+++.|+++.++ .+++|||++++.. |++ |
T Consensus 152 qrv~laral~~~~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tviiisH~~~~~~~~~d~i~~l~~G 231 (272)
T PRK13547 152 ARVQFARVLAQLWPPHDAAQPPRYLLLDEPTAALDLAHQHRLLDTVRRLARDWNLGVLAIVHDPNLAARHADRIAMLADG 231 (272)
T ss_pred HHHHHHHHHhccccccccCCCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECC
Confidence 9999999999 59999999999999999 455555555432 4799999999875 554 8
Q ss_pred cccccCCchHHHH
Q 021362 271 RHISTGKPPDVAK 283 (313)
Q Consensus 271 riv~~G~~~ev~~ 283 (313)
++++.|+++++..
T Consensus 232 ~i~~~g~~~~~~~ 244 (272)
T PRK13547 232 AIVAHGAPADVLT 244 (272)
T ss_pred eEEEecCHHHHcC
Confidence 9999998887743
|
|
| >PRK14271 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-34 Score=262.51 Aligned_cols=198 Identities=14% Similarity=0.104 Sum_probs=156.8
Q ss_pred cEEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCC-----CCceeecCCCCC--
Q 021362 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWP-----QKASSFDSQVKP-- 148 (313)
Q Consensus 76 ~~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p-----~~G~i~~~g~~~-- 148 (313)
++|+++|+++.|++.. +|+|+||+|++||+++|+||||||||||+++|+|+++ | ++|+|.++|.+.
T Consensus 20 ~~l~i~nl~~~~~~~~----il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~---p~~~~~~~G~i~~~g~~i~~ 92 (276)
T PRK14271 20 PAMAAVNLTLGFAGKT----VLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMND---KVSGYRYSGDVLLGGRSIFN 92 (276)
T ss_pred cEEEEeeEEEEECCEE----EeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhccCC---cCCCCCCceEEEECCEEccc
Confidence 4799999999998766 9999999999999999999999999999999999997 6 699999998542
Q ss_pred -------CCeEEEEecCCCCCCcccCCcccChHHHHHhcCC-CCCccHHHHHHHHHHhhcC------CCccCCCCCCcCC
Q 021362 149 -------PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGA-PWTFNPLLLLNCLKNLRNQ------GSVYAPSFDHGVG 214 (313)
Q Consensus 149 -------~~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~-~~~~~~~~~~~~l~~l~~~------~~~~~~~LSgG~k 214 (313)
...++|++|++.. ++ .|+++|+.+.....+. ........+.++++.++.. .+..+.+|||||+
T Consensus 93 ~~~~~~~~~~i~~v~q~~~l-~~--~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~~~~~LSgGq~ 169 (276)
T PRK14271 93 YRDVLEFRRRVGMLFQRPNP-FP--MSIMDNVLAGVRAHKLVPRKEFRGVAQARLTEVGLWDAVKDRLSDSPFRLSGGQQ 169 (276)
T ss_pred cchhHHHhhheEEeccCCcc-CC--ccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCCchhhhHhhCCcccCCHHHH
Confidence 2358999999653 33 6999999876432221 1112223456677777642 2456679999999
Q ss_pred CcchhhhhhccCceEEEEcCCccccCh----hhHHHHHhhcc--ceEEEEcChHHHHH---HHh----hcccccCCchHH
Q 021362 215 DPVEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFD--EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDV 281 (313)
Q Consensus 215 qRv~ia~al~~~ar~Li~d~~~lllDE----~~~~~l~~l~~--~~i~vtHd~~~~~~---rv~----griv~~G~~~ev 281 (313)
||++||++++.++++|++|+|+..||. .+.+.|.++.+ ..|++|||++++.. |++ |++++.|+++++
T Consensus 170 qrl~LAral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tiiivsH~~~~~~~~~dri~~l~~G~i~~~g~~~~~ 249 (276)
T PRK14271 170 QLLCLARTLAVNPEVLLLDEPTSALDPTTTEKIEEFIRSLADRLTVIIVTHNLAQAARISDRAALFFDGRLVEEGPTEQL 249 (276)
T ss_pred HHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 999999999999999999999999999 34455555433 24799999999876 555 899999998887
Q ss_pred HH
Q 021362 282 AK 283 (313)
Q Consensus 282 ~~ 283 (313)
..
T Consensus 250 ~~ 251 (276)
T PRK14271 250 FS 251 (276)
T ss_pred Hh
Confidence 54
|
|
| >PRK14261 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-34 Score=258.29 Aligned_cols=200 Identities=14% Similarity=0.097 Sum_probs=157.0
Q ss_pred cEEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCC---CCceeecCCCCC----
Q 021362 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWP---QKASSFDSQVKP---- 148 (313)
Q Consensus 76 ~~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p---~~G~i~~~g~~~---- 148 (313)
++|+++|+++.|++.. +|+|+||+|++||+++|+||||||||||+++|+|++... | ++|+|.++|++.
T Consensus 5 ~~i~~~~l~~~~~~~~----~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~-~~~~~~G~i~~~g~~~~~~~ 79 (253)
T PRK14261 5 IILSTKNLNLWYGEKH----ALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLI-PGCRITGDILYNGENIMDSG 79 (253)
T ss_pred ceEEEeeeEEEECCee----eeeeeEEEECCCcEEEEECCCCCCHHHHHHHHhccccCC-CCCCcceEEEECCEEccccc
Confidence 4799999999998766 999999999999999999999999999999999987500 2 489999998653
Q ss_pred ------CCeEEEEecCCCCCCcccCCcccChHHHHHhcCCCC-CccHHHHHHHHHHhhc------CCCccCCCCCCcCCC
Q 021362 149 ------PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPW-TFNPLLLLNCLKNLRN------QGSVYAPSFDHGVGD 215 (313)
Q Consensus 149 ------~~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~~-~~~~~~~~~~l~~l~~------~~~~~~~~LSgG~kq 215 (313)
...++|++|++..+ . .|++||+.+....++... ......+.++++.++. ..+..+.+||+||+|
T Consensus 80 ~~~~~~~~~i~~~~q~~~~~-~--~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~q 156 (253)
T PRK14261 80 ADVVALRRKIGMVFQRPNPF-P--KSIYENVAYGPRIHGEKNKKTLDTIVEKSLKGAALWDEVKDRLHDSALSLSGGQQQ 156 (253)
T ss_pred cchhhhhceEEEEecCCccC-c--ccHHHHHHhhHHhcCCCCHHHHHHHHHHHHHHhcCchhhHHHhhcChhhCCHHHHH
Confidence 23489999996543 3 499999988655443221 1223456667776653 235677799999999
Q ss_pred cchhhhhhccCceEEEEcCCccccCh----hhHHHHHhhcc--ceEEEEcChHHHHH---HHh----hcccccCCchHHH
Q 021362 216 PVEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFD--EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVA 282 (313)
Q Consensus 216 Rv~ia~al~~~ar~Li~d~~~lllDE----~~~~~l~~l~~--~~i~vtHd~~~~~~---rv~----griv~~G~~~ev~ 282 (313)
|++||++++.+++++++|+|+..||. .+.+.|+++.+ ..+++|||++++.. |++ |+++..|+++++.
T Consensus 157 rv~laral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~~~tvii~sh~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 236 (253)
T PRK14261 157 RLCIARTLAVNPEVILMDEPCSALDPIATAKIEDLIEDLKKEYTVIIVTHNMQQAARVSDYTGFMYLGKLIEFDKTTQIF 236 (253)
T ss_pred HHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhhCceEEEEEcCHHHHHhhCCEEEEEECCEEEEcCCHHHHH
Confidence 99999999999999999999999999 44455555433 24799999999875 554 8999999988775
Q ss_pred H
Q 021362 283 K 283 (313)
Q Consensus 283 ~ 283 (313)
.
T Consensus 237 ~ 237 (253)
T PRK14261 237 E 237 (253)
T ss_pred h
Confidence 3
|
|
| >PRK14249 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-34 Score=257.24 Aligned_cols=198 Identities=11% Similarity=0.107 Sum_probs=157.2
Q ss_pred cEEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCC-----CceeecCCCCC--
Q 021362 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQ-----KASSFDSQVKP-- 148 (313)
Q Consensus 76 ~~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~-----~G~i~~~g~~~-- 148 (313)
++|+++|+++.|++.. +|+++||+|.+|++++|+||||||||||+++|+|+++ |+ +|+|.++|.+.
T Consensus 3 ~~l~~~~l~~~~~~~~----il~~~s~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~---~~~~~~~~G~v~~~g~~~~~ 75 (251)
T PRK14249 3 PKIKIRGVNFFYHKHQ----VLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMND---IVSGARLEGAVLLDNENIYS 75 (251)
T ss_pred ceEEEEEEEEEECCee----EecceEEEEcCCCEEEEECCCCCCHHHHHHHHhcccC---ccccCCcccEEEECCEEccc
Confidence 3699999999998765 9999999999999999999999999999999999998 87 69999998653
Q ss_pred --------CCeEEEEecCCCCCCcccCCcccChHHHHHhcCCCC-CccHHHHHHHHHHhhc------CCCccCCCCCCcC
Q 021362 149 --------PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPW-TFNPLLLLNCLKNLRN------QGSVYAPSFDHGV 213 (313)
Q Consensus 149 --------~~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~~-~~~~~~~~~~l~~l~~------~~~~~~~~LSgG~ 213 (313)
.+.++|++|++..+ + .|+.||+.+....++... ....+.+.++++.++. ..+..+.+|||||
T Consensus 76 ~~~~~~~~~~~i~~v~q~~~~~-~--~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~Gq 152 (251)
T PRK14249 76 PNLDVVNLRKRVGMVFQQPNPF-P--KSIFDNVAFGPRMLGTTAQSRLDEVVEKSLRQAALWDEVKDNLHKSGLALSGGQ 152 (251)
T ss_pred cccChHHhhceEEEEecCCccC-c--CcHHHHHhhHHHhcCCChhhHHHHHHHHHHHHhCCchhhhhHhhCCcccCCHHH
Confidence 23599999996543 3 499999987654433321 1123445566666653 2356777999999
Q ss_pred CCcchhhhhhccCceEEEEcCCccccCh----hhHHHHHhhcc--ceEEEEcChHHHHH---HHh----hcccccCCchH
Q 021362 214 GDPVEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFD--EKWFIEVDLDTAMQ---RVL----KRHISTGKPPD 280 (313)
Q Consensus 214 kqRv~ia~al~~~ar~Li~d~~~lllDE----~~~~~l~~l~~--~~i~vtHd~~~~~~---rv~----griv~~G~~~e 280 (313)
+||++||++++.++++|++|+|+..||. .+++.|+++.+ ..+++|||++++.. |++ |++++.|++.+
T Consensus 153 ~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tilivsh~~~~~~~~~d~i~~l~~G~i~~~~~~~~ 232 (251)
T PRK14249 153 QQRLCIARVLAIEPEVILMDEPCSALDPVSTMRIEELMQELKQNYTIAIVTHNMQQAARASDWTGFLLTGDLVEYGRTGE 232 (251)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhCCEEEEEeCCeEEEeCCHHH
Confidence 9999999999999999999999999999 44555555532 24799999999886 554 88888998887
Q ss_pred HHH
Q 021362 281 VAK 283 (313)
Q Consensus 281 v~~ 283 (313)
+..
T Consensus 233 ~~~ 235 (251)
T PRK14249 233 IFS 235 (251)
T ss_pred HHh
Confidence 743
|
|
| >PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-34 Score=253.88 Aligned_cols=178 Identities=14% Similarity=0.119 Sum_probs=145.9
Q ss_pred cEEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCC-------
Q 021362 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP------- 148 (313)
Q Consensus 76 ~~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~------- 148 (313)
++|+++|+++.|++.. +|+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.+.
T Consensus 6 ~~i~~~~l~~~~~~~~----il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~~~~~~~~~ 78 (225)
T PRK10247 6 PLLQLQNVGYLAGDAK----ILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLIS---PTSGTLLFEGEDISTLKPEI 78 (225)
T ss_pred ceEEEeccEEeeCCce----eeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhcccC---CCCCeEEECCEEcCcCCHHH
Confidence 3799999999998766 9999999999999999999999999999999999999 9999999998653
Q ss_pred -CCeEEEEecCCCCCCcccCCcccChHHHHHhcCCCCCccHHHHHHHHHHhhcC---CCccCCCCCCcCCCcchhhhhhc
Q 021362 149 -PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ---GSVYAPSFDHGVGDPVEDDILVG 224 (313)
Q Consensus 149 -~~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~---~~~~~~~LSgG~kqRv~ia~al~ 224 (313)
...++|++|++.. +. .|+.||+.+....++. .....++.++++.++.. .+.++.+||+||+||++||++++
T Consensus 79 ~~~~i~~~~q~~~l-~~--~tv~enl~~~~~~~~~--~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~laral~ 153 (225)
T PRK10247 79 YRQQVSYCAQTPTL-FG--DTVYDNLIFPWQIRNQ--QPDPAIFLDDLERFALPDTILTKNIAELSGGEKQRISLIRNLQ 153 (225)
T ss_pred HHhccEEEeccccc-cc--ccHHHHHHhHHhhcCC--ChHHHHHHHHHHHcCCChHHhcCCcccCCHHHHHHHHHHHHHh
Confidence 2358999999654 33 4999999875443322 12345667888888753 35677899999999999999999
Q ss_pred cCceEEEEcCCccccCh----hhHHHHHhhcc----ceEEEEcChHHHH
Q 021362 225 LQHKVVIVDGNYLFLDG----GVWKDVSSMFD----EKWFIEVDLDTAM 265 (313)
Q Consensus 225 ~~ar~Li~d~~~lllDE----~~~~~l~~l~~----~~i~vtHd~~~~~ 265 (313)
.+++++++|+|+..||. .+.+.|.++.+ ..+++|||++++.
T Consensus 154 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvii~sh~~~~~~ 202 (225)
T PRK10247 154 FMPKVLLLDEITSALDESNKHNVNEIIHRYVREQNIAVLWVTHDKDEIN 202 (225)
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECChHHHH
Confidence 99999999999999999 34455555532 2479999999874
|
|
| >TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-34 Score=257.84 Aligned_cols=197 Identities=17% Similarity=0.216 Sum_probs=159.6
Q ss_pred EEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCC------CCe
Q 021362 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP------PDV 151 (313)
Q Consensus 78 l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~------~~~ 151 (313)
|+++|+++.|++.. +|+|+||++.+||+++|+||||||||||+++|+|+++ |++|+|.++|.+. .+.
T Consensus 1 i~i~~l~~~~~~~~----il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~---~~~G~i~i~g~~~~~~~~~~~~ 73 (237)
T TIGR00968 1 IEIANISKRFGSFQ----ALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQ---PDSGRIRLNGQDATRVHARDRK 73 (237)
T ss_pred CEEEEEEEEECCee----eeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC---CCceEEEECCEEcCcCChhhcC
Confidence 46899999998766 9999999999999999999999999999999999998 9999999998653 235
Q ss_pred EEEEecCCCCCCcccCCcccChHHHHHhcCCCCCccHHHHHHHHHHhhcC--CCccCCCCCCcCCCcchhhhhhccCceE
Q 021362 152 ATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGLQHKV 229 (313)
Q Consensus 152 i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~~~~~LSgG~kqRv~ia~al~~~ar~ 229 (313)
++|++|++..+. .+|+.||+.+....++.......+.+.++++.++.. .+..+..||+||+||++||++++.++++
T Consensus 74 i~~~~q~~~~~~--~~t~~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrl~laral~~~p~l 151 (237)
T TIGR00968 74 IGFVFQHYALFK--HLTVRDNIAFGLEIRKHPKAKIKARVEELLELVQLEGLGDRYPNQLSGGQRQRVALARALAVEPQV 151 (237)
T ss_pred EEEEecChhhcc--CCcHHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCChhhCCHHHHHHHHHHHHHhcCCCE
Confidence 899999965433 479999998765443332223345567788887743 4566779999999999999999999999
Q ss_pred EEEcCCccccCh----hhHHHHHhhcc----ceEEEEcChHHHHH---HHh----hcccccCCchHHHH
Q 021362 230 VIVDGNYLFLDG----GVWKDVSSMFD----EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAK 283 (313)
Q Consensus 230 Li~d~~~lllDE----~~~~~l~~l~~----~~i~vtHd~~~~~~---rv~----griv~~G~~~ev~~ 283 (313)
+++|+|+..||. .+++.|.++.. ..+++||+++++.. |++ |++++.|+.+++..
T Consensus 152 lllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tvli~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~~~~~ 220 (237)
T TIGR00968 152 LLLDEPFGALDAKVRKELRSWLRKLHDEVHVTTVFVTHDQEEAMEVADRIVVMSNGKIEQIGSPDEVYD 220 (237)
T ss_pred EEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCEEEEEECCEEEEecCHHHHHc
Confidence 999999999999 45556655533 24799999998766 554 89988888877754
|
|
| >cd03299 ABC_ModC_like Archeal protein closely related to ModC | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-34 Score=256.77 Aligned_cols=196 Identities=15% Similarity=0.174 Sum_probs=158.6
Q ss_pred EEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCC------CCe
Q 021362 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP------PDV 151 (313)
Q Consensus 78 l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~------~~~ 151 (313)
|+++|+++.|++ . +|+|+||+|.+||+++|+||||||||||+++|+|+++ |++|+|+++|.+. .+.
T Consensus 1 l~~~~l~~~~~~-~----~l~~is~~i~~Ge~~~i~G~nG~GKStLl~~l~G~~~---p~~G~v~i~g~~~~~~~~~~~~ 72 (235)
T cd03299 1 LKVENLSKDWKE-F----KLKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIK---PDSGKILLNGKDITNLPPEKRD 72 (235)
T ss_pred CeeEeEEEEeCC-c----eeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcC---CCceEEEECCEEcCcCChhHcC
Confidence 468999999975 3 7999999999999999999999999999999999999 9999999999653 236
Q ss_pred EEEEecCCCCCCcccCCcccChHHHHHhcCCCCCccHHHHHHHHHHhhcC--CCccCCCCCCcCCCcchhhhhhccCceE
Q 021362 152 ATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGLQHKV 229 (313)
Q Consensus 152 i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~~~~~LSgG~kqRv~ia~al~~~ar~ 229 (313)
++|++|+...++ .+|+.||+.+.....+.......+.+.++++.++.. .+.++.+||+||+||++||++++.++++
T Consensus 73 i~~~~q~~~~~~--~~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~l 150 (235)
T cd03299 73 ISYVPQNYALFP--HMTVYKNIAYGLKKRKVDKKEIERKVLEIAEMLGIDHLLNRKPETLSGGEQQRVAIARALVVNPKI 150 (235)
T ss_pred EEEEeecCccCC--CccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHHhcCcccCCHHHHHHHHHHHHHHcCCCE
Confidence 899999965443 489999998765444332223344567788888743 4567779999999999999999999999
Q ss_pred EEEcCCccccCh----hhHHHHHhhcc----ceEEEEcChHHHHH---HHh----hcccccCCchHHHH
Q 021362 230 VIVDGNYLFLDG----GVWKDVSSMFD----EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAK 283 (313)
Q Consensus 230 Li~d~~~lllDE----~~~~~l~~l~~----~~i~vtHd~~~~~~---rv~----griv~~G~~~ev~~ 283 (313)
+++|+|+..||. .+++.|+++.. ..+++||+++++.. |++ |++++.|+++++..
T Consensus 151 lllDEPt~gLD~~~~~~l~~~l~~~~~~~~~tili~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 219 (235)
T cd03299 151 LLLDEPFSALDVRTKEKLREELKKIRKEFGVTVLHVTHDFEEAWALADKVAIMLNGKLIQVGKPEEVFK 219 (235)
T ss_pred EEECCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCEEEEecCHHHHHh
Confidence 999999999999 55666666543 24799999999875 554 89998888776643
|
ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14236 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-34 Score=260.96 Aligned_cols=202 Identities=11% Similarity=0.061 Sum_probs=157.6
Q ss_pred ccEEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcc--cCCCCceeecCCCCC----
Q 021362 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINK--IWPQKASSFDSQVKP---- 148 (313)
Q Consensus 75 m~~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~--~~p~~G~i~~~g~~~---- 148 (313)
.++|+++|+++.|++.. +|+|+||+|++||+++|+||||||||||+++|+|+++. ..|++|+|.++|.+.
T Consensus 23 ~~~l~~~nl~~~~~~~~----il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~laGl~~~~~~~~~~G~i~i~g~~i~~~~ 98 (272)
T PRK14236 23 QTALEVRNLNLFYGDKQ----ALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRLDGQNIYDKK 98 (272)
T ss_pred CcEEEEEEEEEEECCee----EeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCccCCCCceEEEECCEECcccc
Confidence 45799999999998765 99999999999999999999999999999999999860 002799999998653
Q ss_pred ------CCeEEEEecCCCCCCcccCCcccChHHHHHhcCCCC-CccHHHHHHHHHHhhcC------CCccCCCCCCcCCC
Q 021362 149 ------PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPW-TFNPLLLLNCLKNLRNQ------GSVYAPSFDHGVGD 215 (313)
Q Consensus 149 ------~~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~~-~~~~~~~~~~l~~l~~~------~~~~~~~LSgG~kq 215 (313)
...++|++|+... +. .|+.||+.+.....+... ....+++.++++.++.. .+..+.+|||||+|
T Consensus 99 ~~~~~~~~~i~~v~q~~~l-~~--~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~q 175 (272)
T PRK14236 99 VDVAELRRRVGMVFQRPNP-FP--KSIYENVVYGLRLQGINNRRVLDEAVERSLRGAALWDEVKDRLHENAFGLSGGQQQ 175 (272)
T ss_pred cCHHHHhccEEEEecCCcc-Cc--ccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCChhHHHHhhCCcccCCHHHHH
Confidence 2358999999643 33 399999987654333211 11234566777776642 34567799999999
Q ss_pred cchhhhhhccCceEEEEcCCccccCh----hhHHHHHhhccc--eEEEEcChHHHHH---HHh----hcccccCCchHHH
Q 021362 216 PVEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFDE--KWFIEVDLDTAMQ---RVL----KRHISTGKPPDVA 282 (313)
Q Consensus 216 Rv~ia~al~~~ar~Li~d~~~lllDE----~~~~~l~~l~~~--~i~vtHd~~~~~~---rv~----griv~~G~~~ev~ 282 (313)
|++||++++.+++++++|+|+..||. .+++.|.++.+. .+++|||++++.. |++ |++++.|+++++.
T Consensus 176 rv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 255 (272)
T PRK14236 176 RLVIARAIAIEPEVLLLDEPTSALDPISTLKIEELITELKSKYTIVIVTHNMQQAARVSDYTAFMYMGKLVEYGDTDTLF 255 (272)
T ss_pred HHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCeEEEEeCCHHHHHhhCCEEEEEECCEEEecCCHHHHh
Confidence 99999999999999999999999999 445555555332 4799999999876 555 8999999888774
Q ss_pred H
Q 021362 283 K 283 (313)
Q Consensus 283 ~ 283 (313)
.
T Consensus 256 ~ 256 (272)
T PRK14236 256 T 256 (272)
T ss_pred c
Confidence 3
|
|
| >TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-34 Score=284.04 Aligned_cols=199 Identities=14% Similarity=0.106 Sum_probs=159.5
Q ss_pred EEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHh--cccCCCCceeecC-----------
Q 021362 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRI--NKIWPQKASSFDS----------- 144 (313)
Q Consensus 78 l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~--~~~~p~~G~i~~~----------- 144 (313)
|+++|+++.|++.. +|+|+||+|++|++++|+||||||||||+|+|+|++ + |++|+|.++
T Consensus 1 l~~~~l~~~~~~~~----~l~~is~~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~~~---p~~G~i~~~~~~~~~~~~~~ 73 (520)
T TIGR03269 1 IEVKNLTKKFDGKE----VLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYE---PTSGRIIYHVALCEKCGYVE 73 (520)
T ss_pred CEEEEEEEEECCeE----eeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhhcccCC---CCceEEEEeccccccccccc
Confidence 57899999998765 999999999999999999999999999999999996 7 999999986
Q ss_pred ------------CCC------------------CCCeEEEEecCCCCCCcccCCcccChHHHHHhcCCCCCccHHHHHHH
Q 021362 145 ------------QVK------------------PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNC 194 (313)
Q Consensus 145 ------------g~~------------------~~~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~~~~~~~~~~~~ 194 (313)
|.+ ..+.++|++|+...++. .+|+++|+.+.....+.+.....+++.++
T Consensus 74 ~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~-~~tv~~~l~~~~~~~~~~~~~~~~~~~~~ 152 (520)
T TIGR03269 74 RPSKVGEPCPVCGGTLEPEEVDFWNLSDKLRRRIRKRIAIMLQRTFALYG-DDTVLDNVLEALEEIGYEGKEAVGRAVDL 152 (520)
T ss_pred cccccccccccccccccccchhhhccCHHHHHHhhhcEEEEeccccccCC-CCCHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 211 12348999997333332 47999999887654444333344577888
Q ss_pred HHHhhcC--CCccCCCCCCcCCCcchhhhhhccCceEEEEcCCccccCh----hhHHHHHhhcc----ceEEEEcChHHH
Q 021362 195 LKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFD----EKWFIEVDLDTA 264 (313)
Q Consensus 195 l~~l~~~--~~~~~~~LSgG~kqRv~ia~al~~~ar~Li~d~~~lllDE----~~~~~l~~l~~----~~i~vtHd~~~~ 264 (313)
++.++.. .++++.+|||||||||+||+|++.++++|++|+|+..||. .+++.|+++.+ .+|+||||++.+
T Consensus 153 l~~~gl~~~~~~~~~~LSgGq~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~ 232 (520)
T TIGR03269 153 IEMVQLSHRITHIARDLSGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKASGISMVLTSHWPEVI 232 (520)
T ss_pred HHHcCChhhhhcCcccCCHHHHHHHHHHHHHhcCCCEEEeeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHH
Confidence 9998843 4567789999999999999999999999999999999999 44555566643 247999999998
Q ss_pred HH---HHh----hcccccCCchHHHHH
Q 021362 265 MQ---RVL----KRHISTGKPPDVAKW 284 (313)
Q Consensus 265 ~~---rv~----griv~~G~~~ev~~~ 284 (313)
.. |++ |+++..|.++++...
T Consensus 233 ~~~~d~i~~l~~G~i~~~g~~~~~~~~ 259 (520)
T TIGR03269 233 EDLSDKAIWLENGEIKEEGTPDEVVAV 259 (520)
T ss_pred HHhcCEEEEEeCCEEeeecCHHHHHHH
Confidence 76 555 888888988887654
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2. |
| >PRK14260 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.7e-34 Score=258.24 Aligned_cols=199 Identities=14% Similarity=0.117 Sum_probs=158.0
Q ss_pred ccEEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCC-----CCceeecCCCCC-
Q 021362 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWP-----QKASSFDSQVKP- 148 (313)
Q Consensus 75 m~~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p-----~~G~i~~~g~~~- 148 (313)
+++|+++|+++.|++.. +|+|+||+|++||+++|+|+||||||||+++|+|+++ | ++|+|.++|++.
T Consensus 5 ~~~l~~~~l~~~~~~~~----il~~isl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~---~~~~~~~~G~i~~~g~~i~ 77 (259)
T PRK14260 5 IPAIKVKDLSFYYNTSK----AIEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISE---LEGPVKVEGVVDFFGQNIY 77 (259)
T ss_pred cceEEEEEEEEEECCeE----eecceEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcC---cccCCccceEEEECCEecc
Confidence 45799999999998765 9999999999999999999999999999999999987 5 489999998653
Q ss_pred ---------CCeEEEEecCCCCCCcccCCcccChHHHHHhcCC-CCCccHHHHHHHHHHhhc------CCCccCCCCCCc
Q 021362 149 ---------PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGA-PWTFNPLLLLNCLKNLRN------QGSVYAPSFDHG 212 (313)
Q Consensus 149 ---------~~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~-~~~~~~~~~~~~l~~l~~------~~~~~~~~LSgG 212 (313)
...++|++|++..+ . +|++||+.+.....+. +.....+.+.++++.++. ..+..+.+||+|
T Consensus 78 ~~~~~~~~~~~~i~~v~q~~~l~-~--~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G 154 (259)
T PRK14260 78 DPRININRLRRQIGMVFQRPNPF-P--MSIYENVAYGVRISAKLPQADLDEIVESALKGAALWQEVKDKLNKSALGLSGG 154 (259)
T ss_pred ccccchHhhhhheEEEecccccC-C--ccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchhhhHhcCCcccCCHH
Confidence 13589999996543 2 6999999876543321 222233456677777663 245567799999
Q ss_pred CCCcchhhhhhccCceEEEEcCCccccCh----hhHHHHHhhccc--eEEEEcChHHHHH---HH--h-------hcccc
Q 021362 213 VGDPVEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFDE--KWFIEVDLDTAMQ---RV--L-------KRHIS 274 (313)
Q Consensus 213 ~kqRv~ia~al~~~ar~Li~d~~~lllDE----~~~~~l~~l~~~--~i~vtHd~~~~~~---rv--~-------griv~ 274 (313)
|+||++||++++.++++|++|+|+..||. .+++.|.++... .+++|||++++.. |+ + |++++
T Consensus 155 ~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~i~~~~d~i~~l~~~~~~~G~i~~ 234 (259)
T PRK14260 155 QQQRLCIARALAIKPKVLLMDEPCSALDPIATMKVEELIHSLRSELTIAIVTHNMQQATRVSDFTAFFSTDESRIGQMVE 234 (259)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCeEEEEeccCCCCceEEE
Confidence 99999999999999999999999999998 455666555432 4799999999976 32 2 78888
Q ss_pred cCCchHHHH
Q 021362 275 TGKPPDVAK 283 (313)
Q Consensus 275 ~G~~~ev~~ 283 (313)
.|++.++..
T Consensus 235 ~~~~~~~~~ 243 (259)
T PRK14260 235 FGVTTQIFS 243 (259)
T ss_pred eCCHHHHhc
Confidence 888888743
|
|
| >PRK14243 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.5e-34 Score=258.73 Aligned_cols=200 Identities=12% Similarity=0.086 Sum_probs=154.9
Q ss_pred cEEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhccc--CCCCceeecCCCCC-----
Q 021362 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKI--WPQKASSFDSQVKP----- 148 (313)
Q Consensus 76 ~~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~--~p~~G~i~~~g~~~----- 148 (313)
++|+++|+++.|++.. +|+|+||+|++||+++|+||||||||||+++|+|++... .|++|+|.++|.+.
T Consensus 9 ~~l~i~~v~~~~~~~~----il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~ 84 (264)
T PRK14243 9 TVLRTENLNVYYGSFL----AVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGKNLYAPDV 84 (264)
T ss_pred eEEEEeeeEEEECCEE----EeecceEEEcCCCEEEEECCCCCCHHHHHHHHHhhhcccCCCCCceEEEECCEEcccccc
Confidence 3799999999998765 999999999999999999999999999999999998510 02799999998653
Q ss_pred -----CCeEEEEecCCCCCCcccCCcccChHHHHHhcCCCCCccHHHHHHHHHHhhc------CCCccCCCCCCcCCCcc
Q 021362 149 -----PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN------QGSVYAPSFDHGVGDPV 217 (313)
Q Consensus 149 -----~~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~~~~~~~~~~~~l~~l~~------~~~~~~~~LSgG~kqRv 217 (313)
...++|++|++..+ . .|+.+|+.+.....+.. ....+++.++++.++. ..+..+.+|||||+||+
T Consensus 85 ~~~~~~~~i~~v~q~~~~~-~--~tv~enl~~~~~~~~~~-~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv 160 (264)
T PRK14243 85 DPVEVRRRIGMVFQKPNPF-P--KSIYDNIAYGARINGYK-GDMDELVERSLRQAALWDEVKDKLKQSGLSLSGGQQQRL 160 (264)
T ss_pred ChHHHhhhEEEEccCCccc-c--ccHHHHHHhhhhhcCcc-hHHHHHHHHHHHHhCchhhHHHHhcCCcccCCHHHHHHH
Confidence 23589999996433 3 49999998765433221 1223445556666553 23556779999999999
Q ss_pred hhhhhhccCceEEEEcCCccccCh----hhHHHHHhhccc--eEEEEcChHHHHH---HHh-------------hccccc
Q 021362 218 EDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFDE--KWFIEVDLDTAMQ---RVL-------------KRHIST 275 (313)
Q Consensus 218 ~ia~al~~~ar~Li~d~~~lllDE----~~~~~l~~l~~~--~i~vtHd~~~~~~---rv~-------------griv~~ 275 (313)
+||++++.++++|++|+|+..||. .+++.|.++.+. .|++|||++++.. |++ |++++.
T Consensus 161 ~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tvi~vtH~~~~~~~~~d~v~~l~~~~~~~~~~~g~i~~~ 240 (264)
T PRK14243 161 CIARAIAVQPEVILMDEPCSALDPISTLRIEELMHELKEQYTIIIVTHNMQQAARVSDMTAFFNVELTEGGGRYGYLVEF 240 (264)
T ss_pred HHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEecccccccccCceEEEe
Confidence 999999999999999999999999 445555555432 4799999999887 432 688888
Q ss_pred CCchHHHH
Q 021362 276 GKPPDVAK 283 (313)
Q Consensus 276 G~~~ev~~ 283 (313)
|+++++..
T Consensus 241 ~~~~~~~~ 248 (264)
T PRK14243 241 DRTEKIFN 248 (264)
T ss_pred CCHHHHHh
Confidence 88888854
|
|
| >PRK14238 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.5e-34 Score=259.67 Aligned_cols=201 Identities=10% Similarity=0.075 Sum_probs=155.3
Q ss_pred cEEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhc--ccCCCCceeecCCCCC-----
Q 021362 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN--KIWPQKASSFDSQVKP----- 148 (313)
Q Consensus 76 ~~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~--~~~p~~G~i~~~g~~~----- 148 (313)
++|+++|+++.|++.. +|+|+||+|++|++++|+|+||||||||+++|+|+++ ..+|++|+|.++|.+.
T Consensus 23 ~~l~~~~l~~~~~~~~----il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~ 98 (271)
T PRK14238 23 VVFDTQNLNLWYGEDH----ALKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNIFDKSY 98 (271)
T ss_pred eEEEEeeeEEEECCcc----eeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceeEEECCEEcccccc
Confidence 3799999999998765 9999999999999999999999999999999999985 1124899999998653
Q ss_pred -----CCeEEEEecCCCCCCcccCCcccChHHHHHhcCCCCC-ccHHHHHHHHHHhh------cCCCccCCCCCCcCCCc
Q 021362 149 -----PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWT-FNPLLLLNCLKNLR------NQGSVYAPSFDHGVGDP 216 (313)
Q Consensus 149 -----~~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~~~-~~~~~~~~~l~~l~------~~~~~~~~~LSgG~kqR 216 (313)
...++|++|++..+ . .|+.||+.+.....+.... .....+.+.++.++ ...+.++.+|||||+||
T Consensus 99 ~~~~~~~~i~~v~q~~~~~-~--~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~LSgGe~qr 175 (271)
T PRK14238 99 SVEELRTNVGMVFQKPNPF-P--KSIYDNVTYGPKIHGIKDKKTLDEIVEKSLRGAAIWDELKDRLHDNAYGLSGGQQQR 175 (271)
T ss_pred cHHHHhhhEEEEecCCccc-c--ccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchHHHHHhcCcccCCHHHHHH
Confidence 23589999996543 3 4999999876543332211 11233455555543 22355677999999999
Q ss_pred chhhhhhccCceEEEEcCCccccCh----hhHHHHHhhcc--ceEEEEcChHHHHH---HHh----hcccccCCchHHHH
Q 021362 217 VEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFD--EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAK 283 (313)
Q Consensus 217 v~ia~al~~~ar~Li~d~~~lllDE----~~~~~l~~l~~--~~i~vtHd~~~~~~---rv~----griv~~G~~~ev~~ 283 (313)
++||++++.++++|++|+|+..||. .+.+.|.++.. ..+++|||++++.. |++ |+++..|++.++..
T Consensus 176 v~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivsH~~~~i~~~~d~i~~l~~G~i~~~g~~~~~~~ 255 (271)
T PRK14238 176 LCIARCLAIEPDVILMDEPTSALDPISTLKVEELVQELKKDYSIIIVTHNMQQAARISDKTAFFLNGYVNEYDDTDKIFS 255 (271)
T ss_pred HHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHcCCEEEEEEcCHHHHHHhCCEEEEEECCEEEEeCCHHHHHc
Confidence 9999999999999999999999999 44445555433 24799999999876 554 89999998877743
|
|
| >PRK14255 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.4e-34 Score=256.50 Aligned_cols=200 Identities=15% Similarity=0.101 Sum_probs=155.8
Q ss_pred cEEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCC---CCceeecCCCCC----
Q 021362 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWP---QKASSFDSQVKP---- 148 (313)
Q Consensus 76 ~~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p---~~G~i~~~g~~~---- 148 (313)
+||+++|+++.|++.. +|+++||+|.+||+++|+||||||||||+++|+|+++.. | ++|+|.++|.+.
T Consensus 4 ~~l~~~~l~~~~~~~~----~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~-~~~~~~G~i~~~g~~~~~~~ 78 (252)
T PRK14255 4 KIITSSDVHLFYGKFE----ALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLI-PGVTITGNVSLRGQNIYAPN 78 (252)
T ss_pred ceEEEEeEEEEECCee----EEecceEEEcCCCEEEEECCCCCCHHHHHHHHhcccccC-CCCCcccEEEEcCEEccccc
Confidence 3699999999998755 999999999999999999999999999999999986300 3 589999999653
Q ss_pred ------CCeEEEEecCCCCCCcccCCcccChHHHHHhcCCCCCc-cHHHHHHHHHHhhc------CCCccCCCCCCcCCC
Q 021362 149 ------PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTF-NPLLLLNCLKNLRN------QGSVYAPSFDHGVGD 215 (313)
Q Consensus 149 ------~~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~~~~-~~~~~~~~l~~l~~------~~~~~~~~LSgG~kq 215 (313)
...++|++|++..+ . .|+.+|+.+.....+..... ..+.+.+.++.++. ..+..+.+||+||+|
T Consensus 79 ~~~~~~~~~i~~~~q~~~~~-~--~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~Gq~q 155 (252)
T PRK14255 79 EDVVQLRKQVGMVFQQPNPF-P--FSIYENVIYGLRLAGVKDKAVLDEAVETSLKQAAIWDEVKDHLHESALSLSGGQQQ 155 (252)
T ss_pred ccHHHhcCeEEEEECCCccC-C--CcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCccchhhHHhcCcccCCHHHHH
Confidence 23589999996433 3 59999998765443322111 12345566666653 234567799999999
Q ss_pred cchhhhhhccCceEEEEcCCccccCh----hhHHHHHhhcc--ceEEEEcChHHHHH---HHh----hcccccCCchHHH
Q 021362 216 PVEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFD--EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVA 282 (313)
Q Consensus 216 Rv~ia~al~~~ar~Li~d~~~lllDE----~~~~~l~~l~~--~~i~vtHd~~~~~~---rv~----griv~~G~~~ev~ 282 (313)
|++||++++.++++|++|+|+..||. .+.+.|+++.+ ..|++|||++++.. |++ |++++.|++.++.
T Consensus 156 rv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 235 (252)
T PRK14255 156 RVCIARVLAVKPDVILLDEPTSALDPISSTQIENMLLELRDQYTIILVTHSMHQASRISDKTAFFLTGNLIEFADTKQMF 235 (252)
T ss_pred HHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHhCCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHHHh
Confidence 99999999999999999999999999 44555555533 24799999999876 555 8999999888775
Q ss_pred H
Q 021362 283 K 283 (313)
Q Consensus 283 ~ 283 (313)
.
T Consensus 236 ~ 236 (252)
T PRK14255 236 L 236 (252)
T ss_pred c
Confidence 3
|
|
| >TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-34 Score=252.70 Aligned_cols=185 Identities=18% Similarity=0.120 Sum_probs=145.0
Q ss_pred EEEEccceEEccccc---cccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecC--CC--CC-
Q 021362 77 VVEARCMDEVYDALA---QRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDS--QV--KP- 148 (313)
Q Consensus 77 ~l~~~~l~~~y~~~~---~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~--g~--~~- 148 (313)
||+++|+++.|+... ....+|+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++ |. +.
T Consensus 1 ml~~~~l~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~---~~~G~i~~~~~g~~~~~~ 77 (224)
T TIGR02324 1 LLEVEDLSKTFTLHQQGGVRLPVLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYL---PDSGRILVRHEGAWVDLA 77 (224)
T ss_pred CEEEEeeEEEeecccCCCcceEEEecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCCeEEEecCCCccchh
Confidence 489999999996411 01238999999999999999999999999999999999999 999999997 42 21
Q ss_pred -----------CCeEEEEecCCCCCCcccCCcccChHHHHHhcCCCCCccHHHHHHHHHHhhcC---CCccCCCCCCcCC
Q 021362 149 -----------PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ---GSVYAPSFDHGVG 214 (313)
Q Consensus 149 -----------~~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~---~~~~~~~LSgG~k 214 (313)
...++|++|++..++ .+|+.||+.+.....+.......+++.++++.++.. .+.++.+||+||+
T Consensus 78 ~~~~~~~~~~~~~~i~~~~q~~~~~~--~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~ 155 (224)
T TIGR02324 78 QASPREVLEVRRKTIGYVSQFLRVIP--RVSALEVVAEPLLERGVPREAARARARELLARLNIPERLWHLPPATFSGGEQ 155 (224)
T ss_pred hcCHHHHHHHHhcceEEEecccccCC--CccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhhCCcccCCHHHH
Confidence 235899999965433 489999998765433432223345677888888743 2456779999999
Q ss_pred CcchhhhhhccCceEEEEcCCccccCh----hhHHHHHhhccc---eEEEEcChHHHHH
Q 021362 215 DPVEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFDE---KWFIEVDLDTAMQ 266 (313)
Q Consensus 215 qRv~ia~al~~~ar~Li~d~~~lllDE----~~~~~l~~l~~~---~i~vtHd~~~~~~ 266 (313)
||++||++++.++++|++|+|+..||. .+.+.|+++.++ .+++|||++++..
T Consensus 156 qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vsH~~~~~~~ 214 (224)
T TIGR02324 156 QRVNIARGFIADYPILLLDEPTASLDAANRQVVVELIAEAKARGAALIGIFHDEEVREL 214 (224)
T ss_pred HHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHH
Confidence 999999999999999999999999999 445555555332 4799999888753
|
Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se. |
| >PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-34 Score=284.88 Aligned_cols=204 Identities=15% Similarity=0.182 Sum_probs=161.0
Q ss_pred cEEEEccceEEccccc-------cccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCC
Q 021362 76 PVVEARCMDEVYDALA-------QRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP 148 (313)
Q Consensus 76 ~~l~~~~l~~~y~~~~-------~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~ 148 (313)
++|+++|+++.|+... ....+|+++||+|++|++++|+||||||||||+|+|+|++ |++|+|+++|.+.
T Consensus 274 ~~l~~~~l~~~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~----~~~G~i~~~g~~i 349 (529)
T PRK15134 274 PLLDVEQLQVAFPIRKGILKRTVDHNVVVKNISFTLRPGETLGLVGESGSGKSTTGLALLRLI----NSQGEIWFDGQPL 349 (529)
T ss_pred CcccccCcEEEeecCccccccccccceeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhCcC----CCCcEEEECCEEc
Confidence 4799999999996210 0123899999999999999999999999999999999998 7899999998542
Q ss_pred -----------CCeEEEEecCCCCCCcccCCcccChHHHHHhcC--CCCCccHHHHHHHHHHhhcC---CCccCCCCCCc
Q 021362 149 -----------PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRG--APWTFNPLLLLNCLKNLRNQ---GSVYAPSFDHG 212 (313)
Q Consensus 149 -----------~~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~--~~~~~~~~~~~~~l~~l~~~---~~~~~~~LSgG 212 (313)
...++|++|++.....+.+|+.||+.+....++ .+.....+++.++++.++.. .++++.+||||
T Consensus 350 ~~~~~~~~~~~~~~i~~v~q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG 429 (529)
T PRK15134 350 HNLNRRQLLPVRHRIQVVFQDPNSSLNPRLNVLQIIEEGLRVHQPTLSAAQREQQVIAVMEEVGLDPETRHRYPAEFSGG 429 (529)
T ss_pred cccchhhHHHhhhceEEEEeCchhhcCCcccHHHHHHHHHHhccccCChHHHHHHHHHHHHHcCCCHHHHhcCCccCCHH
Confidence 235899999963112234899999988654332 22222345678889988853 46677899999
Q ss_pred CCCcchhhhhhccCceEEEEcCCccccCh----hhHHHHHhhccc----eEEEEcChHHHHH---HHh----hcccccCC
Q 021362 213 VGDPVEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFDE----KWFIEVDLDTAMQ---RVL----KRHISTGK 277 (313)
Q Consensus 213 ~kqRv~ia~al~~~ar~Li~d~~~lllDE----~~~~~l~~l~~~----~i~vtHd~~~~~~---rv~----griv~~G~ 277 (313)
|||||+||++++.++++|++|+|+..||. .+++.|+++.++ .|+||||++++.. |++ |++++.|+
T Consensus 430 ~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~~~ 509 (529)
T PRK15134 430 QRQRIAIARALILKPSLIILDEPTSSLDKTVQAQILALLKSLQQKHQLAYLFISHDLHVVRALCHQVIVLRQGEVVEQGD 509 (529)
T ss_pred HHHHHHHHHHHhCCCCEEEeeCCccccCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHHhcCeEEEEECCEEEEEcC
Confidence 99999999999999999999999999999 456666665432 4799999999886 655 99999998
Q ss_pred chHHHH
Q 021362 278 PPDVAK 283 (313)
Q Consensus 278 ~~ev~~ 283 (313)
++++..
T Consensus 510 ~~~~~~ 515 (529)
T PRK15134 510 CERVFA 515 (529)
T ss_pred HHHHhc
Confidence 888753
|
|
| >TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-34 Score=283.37 Aligned_cols=203 Identities=17% Similarity=0.219 Sum_probs=159.2
Q ss_pred ccEEEEccceEEcccc-ccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecC-CCC-----
Q 021362 75 IPVVEARCMDEVYDAL-AQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDS-QVK----- 147 (313)
Q Consensus 75 m~~l~~~~l~~~y~~~-~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~-g~~----- 147 (313)
.++|+++|+++.|++. .+...+|+|+||+|++|++++|+||||||||||+++|+|+++ |++|+|.++ |.+
T Consensus 277 ~~~l~~~~l~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~Gl~~---p~~G~i~~~~g~~~~~~~ 353 (520)
T TIGR03269 277 EPIIKVRNVSKRYISVDRGVVKAVDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLE---PTSGEVNVRVGDEWVDMT 353 (520)
T ss_pred CceEEEeccEEEeccCCCCCceEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCeEEEEecCCcccccc
Confidence 3489999999999531 011238999999999999999999999999999999999999 999999995 421
Q ss_pred ---------CCCeEEEEecCCCCCCcccCCcccChHHHHHhcCCCCCccHHHHHHHHHHhhcC-------CCccCCCCCC
Q 021362 148 ---------PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ-------GSVYAPSFDH 211 (313)
Q Consensus 148 ---------~~~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~-------~~~~~~~LSg 211 (313)
..+.++|++|++..++ .+|+.+|+.+.... +.+.....+++.++++.++.. .++++.+|||
T Consensus 354 ~~~~~~~~~~~~~i~~v~q~~~l~~--~~tv~e~l~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LSg 430 (520)
T TIGR03269 354 KPGPDGRGRAKRYIGILHQEYDLYP--HRTVLDNLTEAIGL-ELPDELARMKAVITLKMVGFDEEKAEEILDKYPDELSE 430 (520)
T ss_pred ccchhhHHHHhhhEEEEccCcccCC--CCcHHHHHHHHHHc-CCCHHHHHHHHHHHHHhCCCCCccchhhhhCChhhCCH
Confidence 1235899999964333 48999999875432 222222345677888888853 3567789999
Q ss_pred cCCCcchhhhhhccCceEEEEcCCccccCh----hhHHHHHhhccc----eEEEEcChHHHHH---HHh----hcccccC
Q 021362 212 GVGDPVEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFDE----KWFIEVDLDTAMQ---RVL----KRHISTG 276 (313)
Q Consensus 212 G~kqRv~ia~al~~~ar~Li~d~~~lllDE----~~~~~l~~l~~~----~i~vtHd~~~~~~---rv~----griv~~G 276 (313)
||||||+||+|++.++++|++|+|+..||. .+++.|+++.++ .|++|||++++.. |++ |++++.|
T Consensus 431 Gq~qrv~laral~~~p~lLllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~g 510 (520)
T TIGR03269 431 GERHRVALAQVLIKEPRIVILDEPTGTMDPITKVDVTHSILKAREEMEQTFIIVSHDMDFVLDVCDRAALMRDGKIVKIG 510 (520)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHHHHHHhCCEEEEEECCEEEEEC
Confidence 999999999999999999999999999999 455555555332 4799999999886 554 8888888
Q ss_pred CchHHHH
Q 021362 277 KPPDVAK 283 (313)
Q Consensus 277 ~~~ev~~ 283 (313)
+++++..
T Consensus 511 ~~~~~~~ 517 (520)
T TIGR03269 511 DPEEIVE 517 (520)
T ss_pred CHHHHHh
Confidence 8877654
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2. |
| >PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.2e-34 Score=257.00 Aligned_cols=190 Identities=17% Similarity=0.145 Sum_probs=150.6
Q ss_pred cEEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCCCCeEEEE
Q 021362 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVL 155 (313)
Q Consensus 76 ~~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~~~~i~~v 155 (313)
++|+++|+++.|++.. +|+++||+|++|++++|+||||||||||+++|+|+++ |++|+|.+++. ..++|+
T Consensus 3 ~~l~~~~l~~~~~~~~----vl~~vs~~i~~Ge~~~I~G~NGsGKSTLl~~i~Gl~~---p~~G~i~~~~~---~~i~~v 72 (251)
T PRK09544 3 SLVSLENVSVSFGQRR----VLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVA---PDEGVIKRNGK---LRIGYV 72 (251)
T ss_pred cEEEEeceEEEECCce----EEEeEEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC---CCceEEEECCc---cCEEEe
Confidence 3799999999998766 9999999999999999999999999999999999999 99999999873 359999
Q ss_pred ecCCCCCCcccCCcccChHHHHHhcCCCCCccHHHHHHHHHHhhcC--CCccCCCCCCcCCCcchhhhhhccCceEEEEc
Q 021362 156 PMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGLQHKVVIVD 233 (313)
Q Consensus 156 ~qd~~~~~~~~ltv~e~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~~~~~LSgG~kqRv~ia~al~~~ar~Li~d 233 (313)
+|++.....-..++.+++.+ . .....+++.++++.++.. .+.++.+|||||+||++||++++.++++|++|
T Consensus 73 ~q~~~~~~~l~~~~~~~~~~----~---~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLD 145 (251)
T PRK09544 73 PQKLYLDTTLPLTVNRFLRL----R---PGTKKEDILPALKRVQAGHLIDAPMQKLSGGETQRVLLARALLNRPQLLVLD 145 (251)
T ss_pred ccccccccccChhHHHHHhc----c---ccccHHHHHHHHHHcCChHHHhCChhhCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 99964322111244444321 1 112245677888888743 45677799999999999999999999999999
Q ss_pred CCccccCh----hhHHHHHhhcc----ceEEEEcChHHHHH---HHh---hcccccCCchHHH
Q 021362 234 GNYLFLDG----GVWKDVSSMFD----EKWFIEVDLDTAMQ---RVL---KRHISTGKPPDVA 282 (313)
Q Consensus 234 ~~~lllDE----~~~~~l~~l~~----~~i~vtHd~~~~~~---rv~---griv~~G~~~ev~ 282 (313)
+|+..||. .+++.|.++.. ..|++|||++++.. |++ +++++.|+++++.
T Consensus 146 EPt~~LD~~~~~~l~~~L~~~~~~~g~tiiivsH~~~~i~~~~d~i~~l~~~i~~~g~~~~~~ 208 (251)
T PRK09544 146 EPTQGVDVNGQVALYDLIDQLRRELDCAVLMVSHDLHLVMAKTDEVLCLNHHICCSGTPEVVS 208 (251)
T ss_pred CCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEECCceEeeCCHHHHh
Confidence 99999999 45555555533 24799999999876 554 7777889888764
|
|
| >PRK13539 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-34 Score=250.21 Aligned_cols=177 Identities=15% Similarity=0.031 Sum_probs=145.5
Q ss_pred EEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCC-----CCe
Q 021362 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP-----PDV 151 (313)
Q Consensus 77 ~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~-----~~~ 151 (313)
||+++|+++.|++.. +|+++||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.+. ...
T Consensus 2 ~l~~~~l~~~~~~~~----~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~~~~~~~~~~ 74 (207)
T PRK13539 2 MLEGEDLACVRGGRV----LFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLP---PAAGTIKLDGGDIDDPDVAEA 74 (207)
T ss_pred EEEEEeEEEEECCeE----EEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCceEEECCEeCcchhhHhh
Confidence 699999999998766 9999999999999999999999999999999999999 9999999999653 235
Q ss_pred EEEEecCCCCCCcccCCcccChHHHHHhcCCCCCccHHHHHHHHHHhhcC--CCccCCCCCCcCCCcchhhhhhccCceE
Q 021362 152 ATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGLQHKV 229 (313)
Q Consensus 152 i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~~~~~LSgG~kqRv~ia~al~~~ar~ 229 (313)
++|++|+...++ .+|+.+|+.+.....+ ...+++.++++.++.. .+.++.+|||||+||++||++++.++++
T Consensus 75 ~~~~~~~~~~~~--~~tv~~~l~~~~~~~~----~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~l 148 (207)
T PRK13539 75 CHYLGHRNAMKP--ALTVAENLEFWAAFLG----GEELDIAAALEAVGLAPLAHLPFGYLSAGQKRRVALARLLVSNRPI 148 (207)
T ss_pred cEEecCCCcCCC--CCcHHHHHHHHHHhcC----CcHHHHHHHHHHcCCHHHHcCChhhcCHHHHHHHHHHHHHhcCCCE
Confidence 789988754333 4899999987544332 1234577888888743 3566779999999999999999999999
Q ss_pred EEEcCCccccCh----hhHHHHHhhccc---eEEEEcChHHHHH
Q 021362 230 VIVDGNYLFLDG----GVWKDVSSMFDE---KWFIEVDLDTAMQ 266 (313)
Q Consensus 230 Li~d~~~lllDE----~~~~~l~~l~~~---~i~vtHd~~~~~~ 266 (313)
|++|+|+..||. .+++.|.++.++ .+++|||++++..
T Consensus 149 lllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~ 192 (207)
T PRK13539 149 WILDEPTAALDAAAVALFAELIRAHLAQGGIVIAATHIPLGLPG 192 (207)
T ss_pred EEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCchhhcc
Confidence 999999999998 455555555332 4699999998876
|
|
| >cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-34 Score=252.19 Aligned_cols=184 Identities=16% Similarity=0.166 Sum_probs=145.3
Q ss_pred EEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCC---------
Q 021362 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP--------- 148 (313)
Q Consensus 78 l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~--------- 148 (313)
+++ +|+|.|++.. + |+||+|++ |+++|+||||||||||+++|+|+++ |++|+|.++|.+.
T Consensus 2 ~~~-~l~~~~~~~~----~--~vsl~i~~-e~~~i~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~~~~~~~~~~~ 70 (214)
T cd03297 2 LCV-DIEKRLPDFT----L--KIDFDLNE-EVTGIFGASGAGKSTLLRCIAGLEK---PDGGTIVLNGTVLFDSRKKINL 70 (214)
T ss_pred cee-eeeEecCCee----e--CceEEEcc-eeEEEECCCCCCHHHHHHHHhCCCC---CCCceEEECCEecccccchhhh
Confidence 455 9999999864 5 99999999 9999999999999999999999999 9999999998653
Q ss_pred ---CCeEEEEecCCCCCCcccCCcccChHHHHHhcCCCCCccHHHHHHHHHHhhcC--CCccCCCCCCcCCCcchhhhhh
Q 021362 149 ---PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILV 223 (313)
Q Consensus 149 ---~~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~~~~~LSgG~kqRv~ia~al 223 (313)
.+.++|++|+...++ .+|+.+|+.+..... ......+++.++++.++.. .+.++.+||||||||++||+++
T Consensus 71 ~~~~~~i~~~~q~~~~~~--~~t~~~~l~~~~~~~--~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al 146 (214)
T cd03297 71 PPQQRKIGLVFQQYALFP--HLNVRENLAFGLKRK--RNREDRISVDELLDLLGLDHLLNRYPAQLSGGEKQRVALARAL 146 (214)
T ss_pred hhHhhcEEEEecCCccCC--CCCHHHHHHHHHhhC--CHHHHHHHHHHHHHHcCCHhHhhcCcccCCHHHHHHHHHHHHH
Confidence 235899999965443 479999998764322 1122345677888888743 3567779999999999999999
Q ss_pred ccCceEEEEcCCccccCh----hhHHHHHhhccc----eEEEEcChHHHHH---HHh----hcccccC
Q 021362 224 GLQHKVVIVDGNYLFLDG----GVWKDVSSMFDE----KWFIEVDLDTAMQ---RVL----KRHISTG 276 (313)
Q Consensus 224 ~~~ar~Li~d~~~lllDE----~~~~~l~~l~~~----~i~vtHd~~~~~~---rv~----griv~~G 276 (313)
+.+++++++|+|+..||. .+++.|+++.++ .+++|||++++.. |++ |++++.|
T Consensus 147 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g 214 (214)
T cd03297 147 AAQPELLLLDEPFSALDRALRLQLLPELKQIKKNLNIPVIFVTHDLSEAEYLADRIVVMEDGRLQYIG 214 (214)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEecCHHHHHHhcCEEEEEECCEEEecC
Confidence 999999999999999999 455555555332 4799999999865 443 5655443
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13543 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-33 Score=247.93 Aligned_cols=179 Identities=14% Similarity=0.036 Sum_probs=146.4
Q ss_pred cEEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCCC-----C
Q 021362 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPP-----D 150 (313)
Q Consensus 76 ~~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~~-----~ 150 (313)
++|+++|+++.|++.. +|+++||++++||+++|+||||||||||+++|+|+++ |++|+|.++|.+.. +
T Consensus 10 ~~l~~~~l~~~~~~~~----il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~---~~~G~i~~~g~~i~~~~~~~ 82 (214)
T PRK13543 10 PLLAAHALAFSRNEEP----VFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLH---VESGQIQIDGKTATRGDRSR 82 (214)
T ss_pred ceEEEeeEEEecCCce----eeecceEEECCCCEEEEEcCCCCCHHHHHHHHhCCCC---CCCeeEEECCEEccchhhhh
Confidence 4799999999998766 9999999999999999999999999999999999999 99999999996532 3
Q ss_pred eEEEEecCCCCCCcccCCcccChHHHHHhcCCCCCccHHHHHHHHHHhhc--CCCccCCCCCCcCCCcchhhhhhccCce
Q 021362 151 VATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDILVGLQHK 228 (313)
Q Consensus 151 ~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~~~~~~~~~~~~l~~l~~--~~~~~~~~LSgG~kqRv~ia~al~~~ar 228 (313)
.++|++|++..+. .+|+.||+.+....++. ...+.+.++++.++. ..+.++.+||+|||||+++|++++.+++
T Consensus 83 ~i~~~~q~~~~~~--~~t~~e~l~~~~~~~~~---~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~ 157 (214)
T PRK13543 83 FMAYLGHLPGLKA--DLSTLENLHFLCGLHGR---RAKQMPGSALAIVGLAGYEDTLVRQLSAGQKKRLALARLWLSPAP 157 (214)
T ss_pred ceEEeecCccccc--CCcHHHHHHHHHHhcCC---cHHHHHHHHHHHcCChhhccCChhhCCHHHHHHHHHHHHHhcCCC
Confidence 4899999865433 47999999876543331 233456778888773 3466778999999999999999999999
Q ss_pred EEEEcCCccccCh----hhHHHHHhhccc---eEEEEcChHHHHH
Q 021362 229 VVIVDGNYLFLDG----GVWKDVSSMFDE---KWFIEVDLDTAMQ 266 (313)
Q Consensus 229 ~Li~d~~~lllDE----~~~~~l~~l~~~---~i~vtHd~~~~~~ 266 (313)
+|++|+|+..||. .+++.|+++.++ .+++|||++++..
T Consensus 158 llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~ 202 (214)
T PRK13543 158 LWLLDEPYANLDLEGITLVNRMISAHLRGGGAALVTTHGAYAAPP 202 (214)
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecChhhhhh
Confidence 9999999999999 344444444322 4799999998875
|
|
| >PRK14246 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-33 Score=256.08 Aligned_cols=200 Identities=14% Similarity=0.113 Sum_probs=159.1
Q ss_pred ccEEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCC------CCC
Q 021362 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQ------VKP 148 (313)
Q Consensus 75 m~~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g------~~~ 148 (313)
.++|+++|+++.|++.. +|+|+||++.+||+++|+||||||||||+++|+|+++ |++|+|.++| .+.
T Consensus 8 ~~~i~~~~~~~~~~~~~----~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~iaG~~~---~~~G~v~~~G~~~~~g~~~ 80 (257)
T PRK14246 8 EDVFNISRLYLYINDKA----ILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIE---IYDSKIKVDGKVLYFGKDI 80 (257)
T ss_pred hhheeeeeEEEecCCce----eEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCcCceeEcCEEEECCccc
Confidence 35799999999999877 9999999999999999999999999999999999998 9997766655 332
Q ss_pred --------CCeEEEEecCCCCCCcccCCcccChHHHHHhcCCC-CCccHHHHHHHHHHhhcC------CCccCCCCCCcC
Q 021362 149 --------PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAP-WTFNPLLLLNCLKNLRNQ------GSVYAPSFDHGV 213 (313)
Q Consensus 149 --------~~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~-~~~~~~~~~~~l~~l~~~------~~~~~~~LSgG~ 213 (313)
...++|++|++..++ .+|+.+|+.+.....+.. ......++.++++.++.. .+..+..||+||
T Consensus 81 ~~~~~~~~~~~i~~~~q~~~~~~--~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~ 158 (257)
T PRK14246 81 FQIDAIKLRKEVGMVFQQPNPFP--HLSIYDNIAYPLKSHGIKEKREIKKIVEECLRKVGLWKEVYDRLNSPASQLSGGQ 158 (257)
T ss_pred ccCCHHHHhcceEEEccCCccCC--CCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCccchhhhcCCcccCCHHH
Confidence 245899999976443 479999998865433221 122334567788887742 345667999999
Q ss_pred CCcchhhhhhccCceEEEEcCCccccCh----hhHHHHHhhcc--ceEEEEcChHHHHH---HHh----hcccccCCchH
Q 021362 214 GDPVEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFD--EKWFIEVDLDTAMQ---RVL----KRHISTGKPPD 280 (313)
Q Consensus 214 kqRv~ia~al~~~ar~Li~d~~~lllDE----~~~~~l~~l~~--~~i~vtHd~~~~~~---rv~----griv~~G~~~e 280 (313)
+||++||++++.+++++++|+|+..||. .+++.|.++.+ ..|++||+++++.. |++ |++++.|.+++
T Consensus 159 ~qrl~laral~~~P~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiilvsh~~~~~~~~~d~v~~l~~g~i~~~g~~~~ 238 (257)
T PRK14246 159 QQRLTIARALALKPKVLLMDEPTSMIDIVNSQAIEKLITELKNEIAIVIVSHNPQQVARVADYVAFLYNGELVEWGSSNE 238 (257)
T ss_pred HHHHHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCcEEEEEECCHHHHHHhCCEEEEEECCEEEEECCHHH
Confidence 9999999999999999999999999999 45555555533 24799999999865 554 89999998888
Q ss_pred HHH
Q 021362 281 VAK 283 (313)
Q Consensus 281 v~~ 283 (313)
+..
T Consensus 239 ~~~ 241 (257)
T PRK14246 239 IFT 241 (257)
T ss_pred HHh
Confidence 754
|
|
| >PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-34 Score=281.47 Aligned_cols=193 Identities=13% Similarity=0.141 Sum_probs=155.4
Q ss_pred cEEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCC-------
Q 021362 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP------- 148 (313)
Q Consensus 76 ~~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~------- 148 (313)
++|+++|+++.|++.. +|+|+||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|.+.
T Consensus 3 ~~l~~~~l~~~~~~~~----il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~---p~~G~I~~~g~~i~~~~~~~ 75 (501)
T PRK11288 3 PYLSFDGIGKTFPGVK----ALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQ---PDAGSILIDGQEMRFASTTA 75 (501)
T ss_pred ceEEEeeeEEEECCEE----EEeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCC---CCCCEEEECCEECCCCCHHH
Confidence 5799999999998766 9999999999999999999999999999999999999 9999999998653
Q ss_pred --CCeEEEEecCCCCCCcccCCcccChHHHHHh--cC-CCCCccHHHHHHHHHHhhcC--CCccCCCCCCcCCCcchhhh
Q 021362 149 --PDVATVLPMDGFHLYLSQLDAMEDPKEAHAR--RG-APWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDI 221 (313)
Q Consensus 149 --~~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~--~~-~~~~~~~~~~~~~l~~l~~~--~~~~~~~LSgG~kqRv~ia~ 221 (313)
.+.++|++|++..++ .+|+.+|+.+.... .+ .......+++.++++.++.. .++++.+||||||||++||+
T Consensus 76 ~~~~~i~~v~q~~~~~~--~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lar 153 (501)
T PRK11288 76 ALAAGVAIIYQELHLVP--EMTVAENLYLGQLPHKGGIVNRRLLNYEAREQLEHLGVDIDPDTPLKYLSIGQRQMVEIAK 153 (501)
T ss_pred HHhCCEEEEEechhccC--CCCHHHHHHhcccccccCCCCHHHHHHHHHHHHHHcCCCCCcCCchhhCCHHHHHHHHHHH
Confidence 235899999865433 48999999875321 12 11122345677888888843 45677799999999999999
Q ss_pred hhccCceEEEEcCCccccCh----hhHHHHHhhccc---eEEEEcChHHHHH---HHh----hcccccCC
Q 021362 222 LVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFDE---KWFIEVDLDTAMQ---RVL----KRHISTGK 277 (313)
Q Consensus 222 al~~~ar~Li~d~~~lllDE----~~~~~l~~l~~~---~i~vtHd~~~~~~---rv~----griv~~G~ 277 (313)
+++.++++|++|+|+..||. .+++.|+++.++ .|++|||++++.. |++ |+++..+.
T Consensus 154 al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiiitHd~~~~~~~~d~i~~l~~G~i~~~~~ 223 (501)
T PRK11288 154 ALARNARVIAFDEPTSSLSAREIEQLFRVIRELRAEGRVILYVSHRMEEIFALCDAITVFKDGRYVATFD 223 (501)
T ss_pred HHHhCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeecC
Confidence 99999999999999999999 455555555432 4799999999876 555 78776554
|
|
| >cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.2e-34 Score=254.71 Aligned_cols=167 Identities=14% Similarity=0.058 Sum_probs=133.0
Q ss_pred cccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCC-------CCeEEEEecCCCCCCcccCC
Q 021362 96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP-------PDVATVLPMDGFHLYLSQLD 168 (313)
Q Consensus 96 ~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~-------~~~i~~v~qd~~~~~~~~lt 168 (313)
+|+|+||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|.+. ...++|++|+...++ ..+|
T Consensus 36 il~~vs~~i~~Ge~~~i~G~NGsGKSTLl~~i~Gl~~---p~~G~i~~~g~~~~~~~~~~~~~i~~~~~~~~~~~-~~~t 111 (236)
T cd03267 36 ALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQ---PTSGEVRVAGLVPWKRRKKFLRRIGVVFGQKTQLW-WDLP 111 (236)
T ss_pred eeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCcC---CCceEEEECCEEccccchhhcccEEEEcCCccccC-CCCc
Confidence 9999999999999999999999999999999999999 9999999998642 235889885433333 2489
Q ss_pred cccChHHHHHhcCCCCCccHHHHHHHHHHhhc--CCCccCCCCCCcCCCcchhhhhhccCceEEEEcCCccccCh----h
Q 021362 169 AMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDG----G 242 (313)
Q Consensus 169 v~e~~~~~~~~~~~~~~~~~~~~~~~l~~l~~--~~~~~~~~LSgG~kqRv~ia~al~~~ar~Li~d~~~lllDE----~ 242 (313)
+.||+.+....++.......+++.++++.++. ..+.++.+|||||+||++||++++.++++|++|+|+..||. .
T Consensus 112 v~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~ 191 (236)
T cd03267 112 VIDSFYLLAAIYDLPPARFKKRLDELSELLDLEELLDTPVRQLSLGQRMRAEIAAALLHEPEILFLDEPTIGLDVVAQEN 191 (236)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHH
Confidence 99999876554443322334456677887764 34567779999999999999999999999999999999999 4
Q ss_pred hHHHHHhhcc----ceEEEEcChHHHHH
Q 021362 243 VWKDVSSMFD----EKWFIEVDLDTAMQ 266 (313)
Q Consensus 243 ~~~~l~~l~~----~~i~vtHd~~~~~~ 266 (313)
+.+.|.++.+ ..+++|||++++..
T Consensus 192 l~~~l~~~~~~~~~tiiivsH~~~~~~~ 219 (236)
T cd03267 192 IRNFLKEYNRERGTTVLLTSHYMKDIEA 219 (236)
T ss_pred HHHHHHHHHhcCCCEEEEEecCHHHHHH
Confidence 5555555533 24799999998765
|
NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein. |
| >PRK14265 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-33 Score=256.56 Aligned_cols=201 Identities=13% Similarity=0.096 Sum_probs=155.0
Q ss_pred ccEEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhccc--CCCCceeecCCCCC----
Q 021362 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKI--WPQKASSFDSQVKP---- 148 (313)
Q Consensus 75 m~~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~--~p~~G~i~~~g~~~---- 148 (313)
.++|+++|+++.|++.. +|+++||+|++||+++|+||||||||||+++|+|+++.. .|++|+|.++|.+.
T Consensus 18 ~~~l~~~nl~~~~~~~~----~l~~vs~~i~~Ge~~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~l~~~~ 93 (274)
T PRK14265 18 HSVFEVEGVKVFYGGFL----ALVDVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRDRNIYDSQ 93 (274)
T ss_pred CceEEEeeEEEEeCCeE----EEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhcccccccCCCcCceEEECCEeccccc
Confidence 35899999999998765 999999999999999999999999999999999998510 01689999998653
Q ss_pred ------CCeEEEEecCCCCCCcccCCcccChHHHHHhcCCCCCccHHHHHHHHHHhhc------CCCccCCCCCCcCCCc
Q 021362 149 ------PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN------QGSVYAPSFDHGVGDP 216 (313)
Q Consensus 149 ------~~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~~~~~~~~~~~~l~~l~~------~~~~~~~~LSgG~kqR 216 (313)
...++|++|++..+ . .++.+|+.+.....+.. ....+.+.+.++.++. ..+.++.+|||||+||
T Consensus 94 ~~~~~~~~~i~~v~q~~~l~-~--~tv~~nl~~~~~~~~~~-~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qr 169 (274)
T PRK14265 94 INSVKLRRQVGMVFQRPNPF-P--KSIYENIAFAPRANGYK-GNLDELVEDSLRRAAIWEEVKDKLKEKGTALSGGQQQR 169 (274)
T ss_pred chhHHHhhcEEEEccCCccc-c--ccHHHHHHhHHHhcCch-HHHHHHHHHHHHHcccchhhHHHhcCCcccCCHHHHHH
Confidence 23589999996543 3 48999998764333221 1123344556666552 2355677999999999
Q ss_pred chhhhhhccCceEEEEcCCccccCh----hhHHHHHhhccc--eEEEEcChHHHHH---HH--h-----------hcccc
Q 021362 217 VEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFDE--KWFIEVDLDTAMQ---RV--L-----------KRHIS 274 (313)
Q Consensus 217 v~ia~al~~~ar~Li~d~~~lllDE----~~~~~l~~l~~~--~i~vtHd~~~~~~---rv--~-----------griv~ 274 (313)
++||+|++.++++|++|+|+..||. .+.+.|.++.+. .+++|||++++.. |+ + |++++
T Consensus 170 v~LAraL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~~~~~~~~~~G~~~~ 249 (274)
T PRK14265 170 LCIARAIAMKPDVLLMDEPCSALDPISTRQVEELCLELKEQYTIIMVTHNMQQASRVADWTAFFNTEIDEYGKRRGKLVE 249 (274)
T ss_pred HHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEecccccccccCceEEE
Confidence 9999999999999999999999999 455555555432 4799999999976 32 1 67888
Q ss_pred cCCchHHHH
Q 021362 275 TGKPPDVAK 283 (313)
Q Consensus 275 ~G~~~ev~~ 283 (313)
.|++.++..
T Consensus 250 ~g~~~~~~~ 258 (274)
T PRK14265 250 FSPTEQMFG 258 (274)
T ss_pred eCCHHHHHh
Confidence 899888854
|
|
| >TIGR01166 cbiO cobalt transport protein ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-34 Score=246.80 Aligned_cols=164 Identities=18% Similarity=0.106 Sum_probs=131.7
Q ss_pred cccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCC----------CCeEEEEecCCC-CCCc
Q 021362 96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP----------PDVATVLPMDGF-HLYL 164 (313)
Q Consensus 96 ~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~----------~~~i~~v~qd~~-~~~~ 164 (313)
+|+++||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.+. .+.++|++|++. .++.
T Consensus 7 il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~---~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~ 83 (190)
T TIGR01166 7 VLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLR---PQSGAVLIDGEPLDYSRKGLLERRQRVGLVFQDPDDQLFA 83 (190)
T ss_pred eecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCceeEEECCEEccccccchHHHHhhEEEEecChhhcccc
Confidence 9999999999999999999999999999999999999 9999999998653 134899999963 2332
Q ss_pred ccCCcccChHHHHHhcCCCCCccHHHHHHHHHHhhc--CCCccCCCCCCcCCCcchhhhhhccCceEEEEcCCccccCh-
Q 021362 165 SQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDG- 241 (313)
Q Consensus 165 ~~ltv~e~~~~~~~~~~~~~~~~~~~~~~~l~~l~~--~~~~~~~~LSgG~kqRv~ia~al~~~ar~Li~d~~~lllDE- 241 (313)
.|+.||+.+.....+.......+++.++++.++. ..++++.+||+||+||++||++++.++++|++|+|+..||.
T Consensus 84 --~tv~~nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~ 161 (190)
T TIGR01166 84 --ADVDQDVAFGPLNLGLSEAEVERRVREALTAVGASGLRERPTHCLSGGEKKRVAIAGAVAMRPDVLLLDEPTAGLDPA 161 (190)
T ss_pred --ccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCchhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHH
Confidence 6999999876543333222234467788888774 34667779999999999999999999999999999999999
Q ss_pred ---hhHHHHHhhccc---eEEEEcChHHH
Q 021362 242 ---GVWKDVSSMFDE---KWFIEVDLDTA 264 (313)
Q Consensus 242 ---~~~~~l~~l~~~---~i~vtHd~~~~ 264 (313)
.+++.|.++.++ .+++|||++++
T Consensus 162 ~~~~~~~~l~~~~~~~~tili~sH~~~~~ 190 (190)
T TIGR01166 162 GREQMLAILRRLRAEGMTVVISTHDVDLA 190 (190)
T ss_pred HHHHHHHHHHHHHHcCCEEEEEeeccccC
Confidence 455555555332 47999998753
|
This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux. |
| >TIGR01257 rim_protein retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-33 Score=308.92 Aligned_cols=202 Identities=15% Similarity=0.093 Sum_probs=170.8
Q ss_pred cEEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCC-------
Q 021362 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP------- 148 (313)
Q Consensus 76 ~~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~------- 148 (313)
.+|+++||+|.|++. ...+|+|+||+|++||++||+||||||||||+|+|+|+++ |++|+|+++|.+.
T Consensus 1936 ~~L~v~nLsK~Y~~~--~~~aL~~ISf~I~~GEi~gLLG~NGAGKTTLlkmL~Gll~---ptsG~I~i~G~~i~~~~~~~ 2010 (2272)
T TIGR01257 1936 DILRLNELTKVYSGT--SSPAVDRLCVGVRPGECFGLLGVNGAGKTTTFKMLTGDTT---VTSGDATVAGKSILTNISDV 2010 (2272)
T ss_pred ceEEEEEEEEEECCC--CceEEEeeEEEEcCCcEEEEECCCCCcHHHHHHHHhCCCC---CCccEEEECCEECcchHHHH
Confidence 479999999999852 1229999999999999999999999999999999999999 9999999999764
Q ss_pred CCeEEEEecCCCCCCcccCCcccChHHHHHhcCCCCCccHHHHHHHHHHhhc--CCCccCCCCCCcCCCcchhhhhhccC
Q 021362 149 PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDILVGLQ 226 (313)
Q Consensus 149 ~~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~~~~~~~~~~~~l~~l~~--~~~~~~~~LSgG~kqRv~ia~al~~~ 226 (313)
.+.+||++|++..+. .+|++|++.+....++.+.....+.+.++++.++. ..++++.+||||||||+++|+|++.+
T Consensus 2011 r~~IGy~pQ~~~L~~--~LTv~E~L~l~a~l~g~~~~~~~~~v~~lLe~lgL~~~~dk~~~~LSGGqKqRLslA~ALi~~ 2088 (2272)
T TIGR01257 2011 HQNMGYCPQFDAIDD--LLTGREHLYLYARLRGVPAEEIEKVANWSIQSLGLSLYADRLAGTYSGGNKRKLSTAIALIGC 2088 (2272)
T ss_pred hhhEEEEeccccCCC--CCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHhcC
Confidence 245999999865444 48999999987777776554445567788888884 45778889999999999999999999
Q ss_pred ceEEEEcCCccccCh----hhHHHHHhhccc---eEEEEcChHHHHH---HHh----hcccccCCchHHHHH
Q 021362 227 HKVVIVDGNYLFLDG----GVWKDVSSMFDE---KWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAKW 284 (313)
Q Consensus 227 ar~Li~d~~~lllDE----~~~~~l~~l~~~---~i~vtHd~~~~~~---rv~----griv~~G~~~ev~~~ 284 (313)
+++|++|||+..||+ .+|+.|+++.++ +|++||+++++.. |++ |+++..|+++++...
T Consensus 2089 P~VLLLDEPTsGLDp~sr~~l~~lL~~l~~~g~TIILtTH~mee~e~lcDrV~IL~~G~i~~~Gs~q~Lk~~ 2160 (2272)
T TIGR01257 2089 PPLVLLDEPTTGMDPQARRMLWNTIVSIIREGRAVVLTSHSMEECEALCTRLAIMVKGAFQCLGTIQHLKSK 2160 (2272)
T ss_pred CCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHHHH
Confidence 999999999999999 677777776543 4799999999987 655 999999999887544
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease. |
| >PRK14266 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-33 Score=252.98 Aligned_cols=202 Identities=12% Similarity=0.116 Sum_probs=157.4
Q ss_pred ccEEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhc--ccCCCCceeecCCCCC----
Q 021362 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN--KIWPQKASSFDSQVKP---- 148 (313)
Q Consensus 75 m~~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~--~~~p~~G~i~~~g~~~---- 148 (313)
|-+|+++||++.|++.. +|+|+||+|++||+++|+||||||||||+++|+|+.. ...|++|+|.++|.+.
T Consensus 1 ~~~l~~~~v~~~~~~~~----~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~ 76 (250)
T PRK14266 1 MYRIEVENLNTYFDDAH----ILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDGVDIYDPA 76 (250)
T ss_pred CcEEEEEeEEEEeCCeE----EEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhhccCCCCCCccEEEECCEEccccc
Confidence 45799999999998765 9999999999999999999999999999999999863 1113899999999653
Q ss_pred ------CCeEEEEecCCCCCCcccCCcccChHHHHHhcCCCC-CccHHHHHHHHHHhhc------CCCccCCCCCCcCCC
Q 021362 149 ------PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPW-TFNPLLLLNCLKNLRN------QGSVYAPSFDHGVGD 215 (313)
Q Consensus 149 ------~~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~~-~~~~~~~~~~l~~l~~------~~~~~~~~LSgG~kq 215 (313)
.+.++|++|++..+ . .|+.+|+.+.....+... ....+++.++++.++. ..+..+.+||+||+|
T Consensus 77 ~~~~~~~~~i~~~~q~~~~~-~--~t~~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~Gq~q 153 (250)
T PRK14266 77 VDVVELRKKVGMVFQKPNPF-P--KSIFDNVAYGLRIHGEDDEDFIEERVEESLKAAALWDEVKDKLDKSALGLSGGQQQ 153 (250)
T ss_pred ccHHHHhhheEEEecCCccC-c--chHHHHHHhHHhhcCCCCHHHHHHHHHHHHHHcCCchhHHHHHhCCcccCCHHHHH
Confidence 23599999996543 3 489999987644333211 1223456667777653 235567799999999
Q ss_pred cchhhhhhccCceEEEEcCCccccCh----hhHHHHHhhccc--eEEEEcChHHHHH---HHh----hcccccCCchHHH
Q 021362 216 PVEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFDE--KWFIEVDLDTAMQ---RVL----KRHISTGKPPDVA 282 (313)
Q Consensus 216 Rv~ia~al~~~ar~Li~d~~~lllDE----~~~~~l~~l~~~--~i~vtHd~~~~~~---rv~----griv~~G~~~ev~ 282 (313)
|++||++++.++++|++|+|+..||. .+.+.|+++... .+++||+++++.. +++ |++++.|++.++.
T Consensus 154 rv~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tiii~sh~~~~~~~~~~~i~~l~~G~i~~~g~~~~~~ 233 (250)
T PRK14266 154 RLCIARTIAVSPEVILMDEPCSALDPISTTKIEDLIHKLKEDYTIVIVTHNMQQATRVSKYTSFFLNGEIIESGLTDQIF 233 (250)
T ss_pred HHHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCeEEEEECCHHHHHhhcCEEEEEECCeEEEeCCHHHHH
Confidence 99999999999999999999999999 445555555332 4799999999987 443 8999999988874
Q ss_pred H
Q 021362 283 K 283 (313)
Q Consensus 283 ~ 283 (313)
.
T Consensus 234 ~ 234 (250)
T PRK14266 234 I 234 (250)
T ss_pred h
Confidence 3
|
|
| >PRK14252 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-33 Score=254.02 Aligned_cols=198 Identities=14% Similarity=0.090 Sum_probs=156.5
Q ss_pred cEEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCC-----CCceeecCCCCC--
Q 021362 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWP-----QKASSFDSQVKP-- 148 (313)
Q Consensus 76 ~~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p-----~~G~i~~~g~~~-- 148 (313)
.+|+++|+++.|++.. +|+|+||+|++||+++|+|+||||||||+++|+|+++ | ++|+|.++|.+.
T Consensus 15 ~~l~~~~l~~~~~~~~----vl~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---~~~~~~~sG~i~~~g~~~~~ 87 (265)
T PRK14252 15 QKSEVNKLNFYYGGYQ----ALKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHD---LYPGNHYEGEIILHPDNVNI 87 (265)
T ss_pred ceEEEEEEEEEECCee----eeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcccC---CCCCCCcccEEEEcCccccc
Confidence 4799999999998765 9999999999999999999999999999999999986 5 799999987542
Q ss_pred ----------CCeEEEEecCCCCCCcccCCcccChHHHHHhcCCCCC-ccHHHHHHHHHHhhc------CCCccCCCCCC
Q 021362 149 ----------PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWT-FNPLLLLNCLKNLRN------QGSVYAPSFDH 211 (313)
Q Consensus 149 ----------~~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~~~-~~~~~~~~~l~~l~~------~~~~~~~~LSg 211 (313)
...++|++|++..+ . .|+.||+.+.....+.... ...+++.++++.++. ..+..+.+||+
T Consensus 88 ~~~~~~~~~~~~~i~~~~q~~~~~-~--~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~ 164 (265)
T PRK14252 88 LSPEVDPIEVRMRISMVFQKPNPF-P--KSIFENVAYGLRIRGVKRRSILEERVENALRNAALWDEVKDRLGDLAFNLSG 164 (265)
T ss_pred cccccCHHHHhccEEEEccCCcCC-c--chHHHHHHhHHHHcCCChHHHHHHHHHHHHHHcCCchhhhHHHhCCcccCCH
Confidence 23589999996543 3 4999999876543333221 123455666666653 23456779999
Q ss_pred cCCCcchhhhhhccCceEEEEcCCccccCh----hhHHHHHhhcc--ceEEEEcChHHHHH---HHh----hcccccCCc
Q 021362 212 GVGDPVEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFD--EKWFIEVDLDTAMQ---RVL----KRHISTGKP 278 (313)
Q Consensus 212 G~kqRv~ia~al~~~ar~Li~d~~~lllDE----~~~~~l~~l~~--~~i~vtHd~~~~~~---rv~----griv~~G~~ 278 (313)
||+||++||++++.+++++++|+|+..||. .+.+.|.++.. ..+++|||++++.. |++ |++++.|+.
T Consensus 165 G~~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~tiiivth~~~~~~~~~d~i~~l~~G~i~~~g~~ 244 (265)
T PRK14252 165 GQQQRLCIARALATDPEILLFDEPTSALDPIATASIEELISDLKNKVTILIVTHNMQQAARVSDYTAYMYMGELIEFGAT 244 (265)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCH
Confidence 999999999999999999999999999999 44455555443 24799999999876 555 899999988
Q ss_pred hHHHH
Q 021362 279 PDVAK 283 (313)
Q Consensus 279 ~ev~~ 283 (313)
+++..
T Consensus 245 ~~~~~ 249 (265)
T PRK14252 245 DTIFI 249 (265)
T ss_pred HHHHh
Confidence 77743
|
|
| >TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.1e-34 Score=280.31 Aligned_cols=196 Identities=16% Similarity=0.154 Sum_probs=156.8
Q ss_pred EEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCC--CCceeecCCCCC------
Q 021362 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWP--QKASSFDSQVKP------ 148 (313)
Q Consensus 77 ~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p--~~G~i~~~g~~~------ 148 (313)
+|+++|+++.|++.. +|+|+||++++|++++|+||||||||||+++|+|+++ | ++|+|.++|++.
T Consensus 1 ~l~i~~l~~~~~~~~----il~~isl~i~~Ge~~~liG~nGsGKSTLl~~i~G~~~---~~~~~G~i~~~g~~~~~~~~~ 73 (500)
T TIGR02633 1 LLEMKGIVKTFGGVK----ALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYP---HGTWDGEIYWSGSPLKASNIR 73 (500)
T ss_pred CEEEEeEEEEeCCeE----eecceEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCC---CCCCCeEEEECCEECCCCCHH
Confidence 488999999998766 9999999999999999999999999999999999997 7 799999998653
Q ss_pred ---CCeEEEEecCCCCCCcccCCcccChHHHHHhc--C--CCCCccHHHHHHHHHHhhcCC---CccCCCCCCcCCCcch
Q 021362 149 ---PDVATVLPMDGFHLYLSQLDAMEDPKEAHARR--G--APWTFNPLLLLNCLKNLRNQG---SVYAPSFDHGVGDPVE 218 (313)
Q Consensus 149 ---~~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~--~--~~~~~~~~~~~~~l~~l~~~~---~~~~~~LSgG~kqRv~ 218 (313)
...++|++|++..+. .+|+.+|+.+..... + .......+++.++++.++... ++++.+|||||||||+
T Consensus 74 ~~~~~~i~~v~q~~~~~~--~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ 151 (500)
T TIGR02633 74 DTERAGIVIIHQELTLVP--ELSVAENIFLGNEITLPGGRMAYNAMYLRAKNLLRELQLDADNVTRPVGDYGGGQQQLVE 151 (500)
T ss_pred HHHhCCEEEEeeccccCC--CCcHHHHHHhhccccccccccCHHHHHHHHHHHHHHcCCCCCcccCchhhCCHHHHHHHH
Confidence 235899999965333 489999998764321 1 111223356778888888532 3557799999999999
Q ss_pred hhhhhccCceEEEEcCCccccCh----hhHHHHHhhccc---eEEEEcChHHHHH---HHh----hcccccCCchHH
Q 021362 219 DDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFDE---KWFIEVDLDTAMQ---RVL----KRHISTGKPPDV 281 (313)
Q Consensus 219 ia~al~~~ar~Li~d~~~lllDE----~~~~~l~~l~~~---~i~vtHd~~~~~~---rv~----griv~~G~~~ev 281 (313)
||++++.++++|++|+|+..||. .+++.|+++.++ .+++|||++++.. |++ |+++..|.++++
T Consensus 152 iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviiitHd~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 228 (500)
T TIGR02633 152 IAKALNKQARLLILDEPSSSLTEKETEILLDIIRDLKAHGVACVYISHKLNEVKAVCDTICVIRDGQHVATKDMSTM 228 (500)
T ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCcHHHHHHhCCEEEEEeCCeEeeecCcccC
Confidence 99999999999999999999999 455555555433 4799999999876 554 888888877654
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005). |
| >PRK13540 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-33 Score=244.68 Aligned_cols=175 Identities=13% Similarity=0.012 Sum_probs=143.1
Q ss_pred EEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCCC-------
Q 021362 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPP------- 149 (313)
Q Consensus 77 ~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~~------- 149 (313)
||+++|+++.|++.. +|+++||++++||+++|+||||||||||+++|+|+++ |++|+|+++|.+..
T Consensus 1 ml~~~~l~~~~~~~~----il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~---~~~G~v~~~g~~~~~~~~~~~ 73 (200)
T PRK13540 1 MLDVIELDFDYHDQP----LLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLN---PEKGEILFERQSIKKDLCTYQ 73 (200)
T ss_pred CEEEEEEEEEeCCee----EEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCC---CCCeeEEECCCccccCHHHHH
Confidence 488999999998766 9999999999999999999999999999999999999 99999999997632
Q ss_pred CeEEEEecCCCCCCcccCCcccChHHHHHhcCCCCCccHHHHHHHHHHhhc--CCCccCCCCCCcCCCcchhhhhhccCc
Q 021362 150 DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDILVGLQH 227 (313)
Q Consensus 150 ~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~~~~~~~~~~~~l~~l~~--~~~~~~~~LSgG~kqRv~ia~al~~~a 227 (313)
+.++|++|+...++ .+|+.+|+.+..... .....+.++++.++. ..+.++.+||+||+||++||++++.++
T Consensus 74 ~~i~~~~q~~~~~~--~~tv~~~~~~~~~~~-----~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rv~laral~~~p 146 (200)
T PRK13540 74 KQLCFVGHRSGINP--YLTLRENCLYDIHFS-----PGAVGITELCRLFSLEHLIDYPCGLLSSGQKRQVALLRLWMSKA 146 (200)
T ss_pred hheEEeccccccCc--CCCHHHHHHHHHhcC-----cchHHHHHHHHHcCCchhhhCChhhcCHHHHHHHHHHHHHhcCC
Confidence 35899999855333 489999988764211 123467788887774 335566799999999999999999999
Q ss_pred eEEEEcCCccccCh----hhHHHHHhhcc---ceEEEEcChHHHH
Q 021362 228 KVVIVDGNYLFLDG----GVWKDVSSMFD---EKWFIEVDLDTAM 265 (313)
Q Consensus 228 r~Li~d~~~lllDE----~~~~~l~~l~~---~~i~vtHd~~~~~ 265 (313)
++|++|+|+..||. .+++.|+++.+ ..+++||+.+.+.
T Consensus 147 ~~lilDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~ 191 (200)
T PRK13540 147 KLWLLDEPLVALDELSLLTIITKIQEHRAKGGAVLLTSHQDLPLN 191 (200)
T ss_pred CEEEEeCCCcccCHHHHHHHHHHHHHHHHcCCEEEEEeCCchhcc
Confidence 99999999999999 45555555432 2469999988764
|
|
| >PRK14258 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-33 Score=254.44 Aligned_cols=198 Identities=13% Similarity=0.090 Sum_probs=156.2
Q ss_pred cEEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCC-----CceeecCCCCC--
Q 021362 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQ-----KASSFDSQVKP-- 148 (313)
Q Consensus 76 ~~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~-----~G~i~~~g~~~-- 148 (313)
++|+++|+++.|++.. +|+|+||++++|++++|+|+||||||||+++|+|+++ |+ +|+|.++|++.
T Consensus 6 ~~l~~~nl~~~~~~~~----il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~---~~g~i~~~G~i~~~g~~i~~ 78 (261)
T PRK14258 6 PAIKVNNLSFYYDTQK----ILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNE---LESEVRVEGRVEFFNQNIYE 78 (261)
T ss_pred ceEEEeeEEEEeCCee----EeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhcccC---CCCCccccceEEECCEEhhc
Confidence 4799999999998755 9999999999999999999999999999999999998 75 89999988652
Q ss_pred --------CCeEEEEecCCCCCCcccCCcccChHHHHHhcCC-CCCccHHHHHHHHHHhhcC------CCccCCCCCCcC
Q 021362 149 --------PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGA-PWTFNPLLLLNCLKNLRNQ------GSVYAPSFDHGV 213 (313)
Q Consensus 149 --------~~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~-~~~~~~~~~~~~l~~l~~~------~~~~~~~LSgG~ 213 (313)
.+.++|++|+... +. +|+.||+.+.....+. +.....+++.++++.++.. .+..+.+|||||
T Consensus 79 ~~~~~~~~~~~i~~~~q~~~l-~~--~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq 155 (261)
T PRK14258 79 RRVNLNRLRRQVSMVHPKPNL-FP--MSVYDNVAYGVKIVGWRPKLEIDDIVESALKDADLWDEIKHKIHKSALDLSGGQ 155 (261)
T ss_pred cccchHHhhccEEEEecCCcc-Cc--ccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchhhhHhcCCcccCCHHH
Confidence 2348999998653 33 6999999876443332 2222234567777777642 355677999999
Q ss_pred CCcchhhhhhccCceEEEEcCCccccCh----hhHHHHHhhcc----ceEEEEcChHHHHH---HHh---------hccc
Q 021362 214 GDPVEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFD----EKWFIEVDLDTAMQ---RVL---------KRHI 273 (313)
Q Consensus 214 kqRv~ia~al~~~ar~Li~d~~~lllDE----~~~~~l~~l~~----~~i~vtHd~~~~~~---rv~---------griv 273 (313)
+||++||++++.++++|++|+|+..||. .+.+.|.++.. ..+++|||++++.. |++ |+++
T Consensus 156 ~qrv~laral~~~p~vllLDEP~~~LD~~~~~~l~~~l~~l~~~~~~tiiivsH~~~~i~~~~d~i~~l~~~~~~~G~i~ 235 (261)
T PRK14258 156 QQRLCIARALAVKPKVLLMDEPCFGLDPIASMKVESLIQSLRLRSELTMVIVSHNLHQVSRLSDFTAFFKGNENRIGQLV 235 (261)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhcCEEEEEccCCCcCceEE
Confidence 9999999999999999999999999999 44555555432 24699999999876 432 5777
Q ss_pred ccCCchHHHH
Q 021362 274 STGKPPDVAK 283 (313)
Q Consensus 274 ~~G~~~ev~~ 283 (313)
..|+++++..
T Consensus 236 ~~~~~~~~~~ 245 (261)
T PRK14258 236 EFGLTKKIFN 245 (261)
T ss_pred EeCCHHHHHh
Confidence 8888888744
|
|
| >PRK13549 xylose transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-33 Score=280.33 Aligned_cols=202 Identities=14% Similarity=0.141 Sum_probs=157.8
Q ss_pred cEEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCC-CCceeecCCCCCC-----
Q 021362 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWP-QKASSFDSQVKPP----- 149 (313)
Q Consensus 76 ~~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p-~~G~i~~~g~~~~----- 149 (313)
++|+++|+++.|+.. +...+|+|+||+|++|++++|+||||||||||+|+|+|+++ | ++|+|.++|++..
T Consensus 258 ~~l~~~~l~~~~~~~-~~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~---~~~~G~i~~~g~~~~~~~~~ 333 (506)
T PRK13549 258 VILEVRNLTAWDPVN-PHIKRVDDVSFSLRRGEILGIAGLVGAGRTELVQCLFGAYP---GRWEGEIFIDGKPVKIRNPQ 333 (506)
T ss_pred ceEEEecCccccccc-cccccccceeeEEcCCcEEEEeCCCCCCHHHHHHHHhCCCC---CCCCcEEEECCEECCCCCHH
Confidence 479999999999421 01128999999999999999999999999999999999997 6 8999999986532
Q ss_pred ----CeEEEEecCCC--CCCcccCCcccChHHHHH--hcC---CCCCccHHHHHHHHHHhhcC---CCccCCCCCCcCCC
Q 021362 150 ----DVATVLPMDGF--HLYLSQLDAMEDPKEAHA--RRG---APWTFNPLLLLNCLKNLRNQ---GSVYAPSFDHGVGD 215 (313)
Q Consensus 150 ----~~i~~v~qd~~--~~~~~~ltv~e~~~~~~~--~~~---~~~~~~~~~~~~~l~~l~~~---~~~~~~~LSgG~kq 215 (313)
..++|++|++. .++ +.+|+.||+.+... ..+ .......+++.++++.++.. .++++.+|||||||
T Consensus 334 ~~~~~~i~~v~q~~~~~~~~-~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~kq 412 (506)
T PRK13549 334 QAIAQGIAMVPEDRKRDGIV-PVMGVGKNITLAALDRFTGGSRIDDAAELKTILESIQRLKVKTASPELAIARLSGGNQQ 412 (506)
T ss_pred HHHHCCCEEeCcchhhCCCc-CCCCHHHHhhhhhhhhhccCcccChHHHHHHHHHHHHhcCccCCCcccccccCCHHHHH
Confidence 34899999853 222 35899999987532 111 11122335678889998853 46677899999999
Q ss_pred cchhhhhhccCceEEEEcCCccccCh----hhHHHHHhhccc---eEEEEcChHHHHH---HHh----hcccccCCchHH
Q 021362 216 PVEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFDE---KWFIEVDLDTAMQ---RVL----KRHISTGKPPDV 281 (313)
Q Consensus 216 Rv~ia~al~~~ar~Li~d~~~lllDE----~~~~~l~~l~~~---~i~vtHd~~~~~~---rv~----griv~~G~~~ev 281 (313)
||+||++++.++++|++|+|+..||. .+++.|.++.++ .|++|||++++.. |++ |+++..|+++++
T Consensus 413 rv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvi~~sHd~~~~~~~~d~v~~l~~G~i~~~~~~~~~ 492 (506)
T PRK13549 413 KAVLAKCLLLNPKILILDEPTRGIDVGAKYEIYKLINQLVQQGVAIIVISSELPEVLGLSDRVLVMHEGKLKGDLINHNL 492 (506)
T ss_pred HHHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEeccccC
Confidence 99999999999999999999999999 455555555433 4799999999987 554 899888887776
Q ss_pred H
Q 021362 282 A 282 (313)
Q Consensus 282 ~ 282 (313)
.
T Consensus 493 ~ 493 (506)
T PRK13549 493 T 493 (506)
T ss_pred C
Confidence 3
|
|
| >cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-34 Score=256.31 Aligned_cols=193 Identities=14% Similarity=0.165 Sum_probs=148.5
Q ss_pred EEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCC--------C
Q 021362 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP--------P 149 (313)
Q Consensus 78 l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~--------~ 149 (313)
|+++|+++.|+... ..+|+|+||++++||+++|+||||||||||+++|+|+++ |++|+|.++|.+. .
T Consensus 1 i~~~~l~~~~~~~~--~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---~~~G~i~~~g~~~~~~~~~~~~ 75 (237)
T cd03252 1 ITFEHVRFRYKPDG--PVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYV---PENGRVLVDGHDLALADPAWLR 75 (237)
T ss_pred CEEEEEEEecCCCC--ccceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcC---CCCCEEEECCeehHhcCHHHHh
Confidence 46899999996421 128999999999999999999999999999999999999 9999999999653 2
Q ss_pred CeEEEEecCCCCCCcccCCcccChHHHHHhcCCCCCccHHHH---------HHHHHHhh----cCCCccCCCCCCcCCCc
Q 021362 150 DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLL---------LNCLKNLR----NQGSVYAPSFDHGVGDP 216 (313)
Q Consensus 150 ~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~~~~~~~~~---------~~~l~~l~----~~~~~~~~~LSgG~kqR 216 (313)
+.++|++|++.. +. .|+.+|+.+... +. ....+ .++++.+. ...+.++.+||||||||
T Consensus 76 ~~i~~~~q~~~~-~~--~tv~~nl~~~~~--~~----~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~LSgG~~qr 146 (237)
T cd03252 76 RQVGVVLQENVL-FN--RSIRDNIALADP--GM----SMERVIEAAKLAGAHDFISELPEGYDTIVGEQGAGLSGGQRQR 146 (237)
T ss_pred hcEEEEcCCchh-cc--chHHHHhhccCC--CC----CHHHHHHHHHHcCcHHHHHhCcccccchhhcCCCcCCHHHHHH
Confidence 458999999653 32 699999876321 11 11122 22233331 11245677999999999
Q ss_pred chhhhhhccCceEEEEcCCccccCh----hhHHHHHhhcc--ceEEEEcChHHHHH--HHh----hcccccCCchHHHHH
Q 021362 217 VEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFD--EKWFIEVDLDTAMQ--RVL----KRHISTGKPPDVAKW 284 (313)
Q Consensus 217 v~ia~al~~~ar~Li~d~~~lllDE----~~~~~l~~l~~--~~i~vtHd~~~~~~--rv~----griv~~G~~~ev~~~ 284 (313)
++||++++.++++|++|+|+..||. .+.+.|+++.. ..+++|||++++.. +++ |++++.|+++++...
T Consensus 147 v~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~ 226 (237)
T cd03252 147 IAIARALIHNPRILIFDEATSALDYESEHAIMRNMHDICAGRTVIIIAHRLSTVKNADRIIVMEKGRIVEQGSHDELLAE 226 (237)
T ss_pred HHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHhCCEEEEEECCEEEEEcCHHHHHhc
Confidence 9999999999999999999999999 45555655543 24699999999865 444 899999988887654
|
coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy. |
| >PRK14244 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-33 Score=253.59 Aligned_cols=199 Identities=11% Similarity=0.052 Sum_probs=154.3
Q ss_pred EEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcc--cCCCCceeecCCCCC-------
Q 021362 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINK--IWPQKASSFDSQVKP------- 148 (313)
Q Consensus 78 l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~--~~p~~G~i~~~g~~~------- 148 (313)
-+++|+++.|++.. +|+|+||+|++|++++|+||||||||||+++|+|+.+. ..|++|+|.++|.+.
T Consensus 6 ~~~~~l~~~~~~~~----~l~~is~~i~~Ge~~~I~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~ 81 (251)
T PRK14244 6 ASVKNLNLWYGSKQ----ILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVYSVDTNV 81 (251)
T ss_pred EEeeeEEEEECCee----eeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCcceEEEECCEehHhcccch
Confidence 46899999998665 99999999999999999999999999999999999740 003699999998652
Q ss_pred ---CCeEEEEecCCCCCCcccCCcccChHHHHHhcCCCC--CccHHHHHHHHHHhhcC------CCccCCCCCCcCCCcc
Q 021362 149 ---PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPW--TFNPLLLLNCLKNLRNQ------GSVYAPSFDHGVGDPV 217 (313)
Q Consensus 149 ---~~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~~--~~~~~~~~~~l~~l~~~------~~~~~~~LSgG~kqRv 217 (313)
...++|++|++..++ .|+.+|+.+....++... ....+.+.++++.++.. .+..+.+|||||+||+
T Consensus 82 ~~~~~~i~~v~q~~~~~~---~tv~~ni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv 158 (251)
T PRK14244 82 VLLRAKVGMVFQKPNPFP---KSIYDNVAYGPKLHGLAKNKKKLDEIVEKSLTSVGLWEELGDRLKDSAFELSGGQQQRL 158 (251)
T ss_pred HHHhhhEEEEecCccccc---CCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCCchhhhHhhcChhhCCHHHHHHH
Confidence 235899999965433 389999987643333211 12234566778888742 2456679999999999
Q ss_pred hhhhhhccCceEEEEcCCccccCh----hhHHHHHhhcc--ceEEEEcChHHHHH---HHh----hcccccCCchHHHH
Q 021362 218 EDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFD--EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAK 283 (313)
Q Consensus 218 ~ia~al~~~ar~Li~d~~~lllDE----~~~~~l~~l~~--~~i~vtHd~~~~~~---rv~----griv~~G~~~ev~~ 283 (313)
+||++++.++++|++|+|+..||. .+.+.|.++.. ..+++|||++++.. |++ |++++.|++.++..
T Consensus 159 ~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 237 (251)
T PRK14244 159 CIARAIAVKPTMLLMDEPCSALDPVATNVIENLIQELKKNFTIIVVTHSMKQAKKVSDRVAFFQSGRIVEYNTTQEIFK 237 (251)
T ss_pred HHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHhhcCEEEEEECCEEEEeCCHHHHhc
Confidence 999999999999999999999999 45555555532 24799999999876 555 89988898877643
|
|
| >COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-33 Score=266.19 Aligned_cols=190 Identities=16% Similarity=0.112 Sum_probs=159.9
Q ss_pred cEEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCCC------
Q 021362 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPP------ 149 (313)
Q Consensus 76 ~~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~~------ 149 (313)
+.|++++++|.|++.. ++++|||+|.+|||.+|+|.||||||||+++|.|+++ |++|+|+++|++..
T Consensus 3 ~~l~~~~itK~f~~~~----And~V~l~v~~GeIHaLLGENGAGKSTLm~iL~G~~~---P~~GeI~v~G~~v~~~sP~d 75 (501)
T COG3845 3 PALEMRGITKRFPGVV----ANDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQ---PDSGEIRVDGKEVRIKSPRD 75 (501)
T ss_pred ceEEEeccEEEcCCEE----ecCceeeeecCCcEEEEeccCCCCHHHHHHHHhCccc---CCcceEEECCEEeccCCHHH
Confidence 4799999999999887 9999999999999999999999999999999999999 99999999997632
Q ss_pred ---CeEEEEecCCCCCCcccCCcccChHHHHHhc---CCCCCccHHHHHHHHHHhhc--CCCccCCCCCCcCCCcchhhh
Q 021362 150 ---DVATVLPMDGFHLYLSQLDAMEDPKEAHARR---GAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDI 221 (313)
Q Consensus 150 ---~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~---~~~~~~~~~~~~~~l~~l~~--~~~~~~~~LSgG~kqRv~ia~ 221 (313)
.-||+|+|+....+ .+||.||+.++.... ........+++.++.+++|. ..+.++..||-|+||||.|..
T Consensus 76 A~~~GIGMVhQHF~Lv~--~lTV~ENiiLg~e~~~~~~~~~~~~~~~i~~l~~~yGl~vdp~~~V~dLsVG~qQRVEIlK 153 (501)
T COG3845 76 AIRLGIGMVHQHFMLVP--TLTVAENIILGLEPSKGGLIDRRQARARIKELSERYGLPVDPDAKVADLSVGEQQRVEILK 153 (501)
T ss_pred HHHcCCcEEeecccccc--ccchhhhhhhcCccccccccCHHHHHHHHHHHHHHhCCCCCccceeecCCcchhHHHHHHH
Confidence 24899999944433 599999999876432 12334456677888888884 466788899999999999999
Q ss_pred hhccCceEEEEcCCccccCh----hhHHHHHhhccc---eEEEEcChHHHHH---HHh----hcccc
Q 021362 222 LVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFDE---KWFIEVDLDTAMQ---RVL----KRHIS 274 (313)
Q Consensus 222 al~~~ar~Li~d~~~lllDE----~~~~~l~~l~~~---~i~vtHd~~~~~~---rv~----griv~ 274 (313)
+|.+++++||+|+|+..|-+ ++++.++.+.++ +|||||-++++++ |+- |+++.
T Consensus 154 aLyr~a~iLILDEPTaVLTP~E~~~lf~~l~~l~~~G~tIi~ITHKL~Ev~~iaDrvTVLR~Gkvvg 220 (501)
T COG3845 154 ALYRGARLLILDEPTAVLTPQEADELFEILRRLAAEGKTIIFITHKLKEVMAIADRVTVLRRGKVVG 220 (501)
T ss_pred HHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHHHHHHhhCeeEEEeCCeEEe
Confidence 99999999999999999998 677777777665 4799999999998 443 77664
|
|
| >TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-33 Score=245.10 Aligned_cols=175 Identities=15% Similarity=0.019 Sum_probs=142.9
Q ss_pred EEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCC-------CC
Q 021362 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP-------PD 150 (313)
Q Consensus 78 l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~-------~~ 150 (313)
|+++|+++.|++.. +|+++||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|.+. .+
T Consensus 1 l~~~~l~~~~~~~~----~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~~~~~~~~~~~ 73 (198)
T TIGR01189 1 LAARNLACSRGERM----LFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLR---PDSGEVRWNGTALAEQRDEPHR 73 (198)
T ss_pred CEEEEEEEEECCEE----EEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC---CCccEEEECCEEcccchHHhhh
Confidence 47899999998766 9999999999999999999999999999999999999 9999999999753 24
Q ss_pred eEEEEecCCCCCCcccCCcccChHHHHHhcCCCCCccHHHHHHHHHHhhc--CCCccCCCCCCcCCCcchhhhhhccCce
Q 021362 151 VATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDILVGLQHK 228 (313)
Q Consensus 151 ~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~~~~~~~~~~~~l~~l~~--~~~~~~~~LSgG~kqRv~ia~al~~~ar 228 (313)
.++|++|+...++ .+|+.+|+.+.....+ ....++.++++.++. ..+.++.+|||||+||++||++++.+++
T Consensus 74 ~i~~~~q~~~~~~--~~tv~~~l~~~~~~~~----~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~ 147 (198)
T TIGR01189 74 NILYLGHLPGLKP--ELSALENLHFWAAIHG----GAQRTIEDALAAVGLTGFEDLPAAQLSAGQQRRLALARLWLSRAP 147 (198)
T ss_pred heEEeccCccccc--CCcHHHHHHHHHHHcC----CcHHHHHHHHHHcCCHHHhcCChhhcCHHHHHHHHHHHHHhcCCC
Confidence 5899999854333 4799999987654332 123457788888774 3466778999999999999999999999
Q ss_pred EEEEcCCccccCh----hhHHHHHhhccc---eEEEEcChHHHH
Q 021362 229 VVIVDGNYLFLDG----GVWKDVSSMFDE---KWFIEVDLDTAM 265 (313)
Q Consensus 229 ~Li~d~~~lllDE----~~~~~l~~l~~~---~i~vtHd~~~~~ 265 (313)
++++|+|+..||. .+++.|.++.++ .+++||+...+.
T Consensus 148 llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sH~~~~~~ 191 (198)
T TIGR01189 148 LWILDEPTTALDKAGVALLAGLLRAHLARGGIVLLTTHQDLGLV 191 (198)
T ss_pred EEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEEccccccc
Confidence 9999999999998 455555555322 479999986543
|
This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c. |
| >PRK11819 putative ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-33 Score=277.18 Aligned_cols=195 Identities=15% Similarity=0.021 Sum_probs=154.5
Q ss_pred ccEEEEccceEEcc-ccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCCCCeEE
Q 021362 75 IPVVEARCMDEVYD-ALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVAT 153 (313)
Q Consensus 75 m~~l~~~~l~~~y~-~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~~~~i~ 153 (313)
++||+++||++.|+ +.. +|+|+||+|++|++++|+||||||||||+++|+|+++ |++|+|.+++ ...++
T Consensus 4 ~~~l~i~~l~~~y~~~~~----il~~vs~~i~~Ge~~~iiG~NGsGKSTLlk~i~G~~~---p~~G~i~~~~---~~~i~ 73 (556)
T PRK11819 4 QYIYTMNRVSKVVPPKKQ----ILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDK---EFEGEARPAP---GIKVG 73 (556)
T ss_pred cEEEEEeeEEEEeCCCCe----eeeCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCceEEecC---CCEEE
Confidence 35899999999998 555 9999999999999999999999999999999999999 9999999875 24699
Q ss_pred EEecCCCCCCcccCCcccChHHHHHh--------------cCCCCC----------------------ccHHHHHHHHHH
Q 021362 154 VLPMDGFHLYLSQLDAMEDPKEAHAR--------------RGAPWT----------------------FNPLLLLNCLKN 197 (313)
Q Consensus 154 ~v~qd~~~~~~~~ltv~e~~~~~~~~--------------~~~~~~----------------------~~~~~~~~~l~~ 197 (313)
|++|++..++ .+|+.||+.+.... ...... ....++.++++.
T Consensus 74 ~v~Q~~~~~~--~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 151 (556)
T PRK11819 74 YLPQEPQLDP--EKTVRENVEEGVAEVKAALDRFNEIYAAYAEPDADFDALAAEQGELQEIIDAADAWDLDSQLEIAMDA 151 (556)
T ss_pred EEecCCCCCC--CCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCccchHHHHHHHHHh
Confidence 9999965433 58999999875321 011100 113456677777
Q ss_pred hhc-CCCccCCCCCCcCCCcchhhhhhccCceEEEEcCCccccChh----hHHHHHhhccceEEEEcChHHHHH---HHh
Q 021362 198 LRN-QGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGG----VWKDVSSMFDEKWFIEVDLDTAMQ---RVL 269 (313)
Q Consensus 198 l~~-~~~~~~~~LSgG~kqRv~ia~al~~~ar~Li~d~~~lllDE~----~~~~l~~l~~~~i~vtHd~~~~~~---rv~ 269 (313)
++. ..++++.+|||||||||+||++++.++++|++|+|+..||+. +.+.|+++....|+||||++++.. +++
T Consensus 152 ~gl~~~~~~~~~LSgGqkqrv~la~al~~~p~vlLLDEPt~~LD~~~~~~l~~~L~~~~~tviiisHd~~~~~~~~d~i~ 231 (556)
T PRK11819 152 LRCPPWDAKVTKLSGGERRRVALCRLLLEKPDMLLLDEPTNHLDAESVAWLEQFLHDYPGTVVAVTHDRYFLDNVAGWIL 231 (556)
T ss_pred CCCCcccCchhhcCHHHHHHHHHHHHHhCCCCEEEEcCCCCcCChHHHHHHHHHHHhCCCeEEEEeCCHHHHHhhcCeEE
Confidence 774 346677799999999999999999999999999999999994 444445444345799999999987 555
Q ss_pred ----hccc-ccCCchHH
Q 021362 270 ----KRHI-STGKPPDV 281 (313)
Q Consensus 270 ----griv-~~G~~~ev 281 (313)
|+++ ..|..+++
T Consensus 232 ~l~~g~i~~~~g~~~~~ 248 (556)
T PRK11819 232 ELDRGRGIPWEGNYSSW 248 (556)
T ss_pred EEeCCEEEEecCCHHHH
Confidence 7876 56776654
|
|
| >PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-33 Score=279.35 Aligned_cols=194 Identities=13% Similarity=0.098 Sum_probs=155.9
Q ss_pred EccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCC---------CC
Q 021362 80 ARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP---------PD 150 (313)
Q Consensus 80 ~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~---------~~ 150 (313)
++|+++.|++.. +|+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.+. ..
T Consensus 1 ~~nl~~~~~~~~----il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~---p~~G~i~~~g~~~~~~~~~~~~~~ 73 (491)
T PRK10982 1 MSNISKSFPGVK----ALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQ---KDSGSILFQGKEIDFKSSKEALEN 73 (491)
T ss_pred CCceEEEeCCEE----eeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCC---CCceEEEECCEECCCCCHHHHHhC
Confidence 478999998766 9999999999999999999999999999999999999 9999999999653 23
Q ss_pred eEEEEecCCCCCCcccCCcccChHHHHH-hcCC--CCCccHHHHHHHHHHhhc--CCCccCCCCCCcCCCcchhhhhhcc
Q 021362 151 VATVLPMDGFHLYLSQLDAMEDPKEAHA-RRGA--PWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDILVGL 225 (313)
Q Consensus 151 ~i~~v~qd~~~~~~~~ltv~e~~~~~~~-~~~~--~~~~~~~~~~~~l~~l~~--~~~~~~~~LSgG~kqRv~ia~al~~ 225 (313)
.++|++|++..++ .+|+.+|+.+... ..+. ......+++.++++.++. ..++++.+|||||||||+||++++.
T Consensus 74 ~i~~v~q~~~~~~--~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lA~al~~ 151 (491)
T PRK10982 74 GISMVHQELNLVL--QRSVMDNMWLGRYPTKGMFVDQDKMYRDTKAIFDELDIDIDPRAKVATLSVSQMQMIEIAKAFSY 151 (491)
T ss_pred CEEEEeccccccc--CCCHHHHhhcccccccccccCHHHHHHHHHHHHHHcCCCCCccCchhhCCHHHHHHHHHHHHHHh
Confidence 5899999965433 4899999987532 1121 111223467788888874 3466778999999999999999999
Q ss_pred CceEEEEcCCccccCh----hhHHHHHhhccc---eEEEEcChHHHHH---HHh----hcccccCCchHHH
Q 021362 226 QHKVVIVDGNYLFLDG----GVWKDVSSMFDE---KWFIEVDLDTAMQ---RVL----KRHISTGKPPDVA 282 (313)
Q Consensus 226 ~ar~Li~d~~~lllDE----~~~~~l~~l~~~---~i~vtHd~~~~~~---rv~----griv~~G~~~ev~ 282 (313)
++++|++|+|+..||. .+++.|+++.+. .|++|||++++.. |++ |++++.|+++++.
T Consensus 152 ~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvii~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 222 (491)
T PRK10982 152 NAKIVIMDEPTSSLTEKEVNHLFTIIRKLKERGCGIVYISHKMEEIFQLCDEITILRDGQWIATQPLAGLT 222 (491)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEeecChhhCC
Confidence 9999999999999999 455555555432 4799999999876 555 8999988877753
|
|
| >PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-33 Score=277.09 Aligned_cols=193 Identities=10% Similarity=-0.023 Sum_probs=154.3
Q ss_pred ccEEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCCC-----
Q 021362 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPP----- 149 (313)
Q Consensus 75 m~~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~~----- 149 (313)
|.||+++|+++.|++.. +|+|+||+|++|++++|+||||||||||+|+|+|+++ |++|+|.++|.+..
T Consensus 1 m~~l~~~~l~~~~~~~~----il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~G~~~---p~~G~i~~~~~~~~~~~~~ 73 (490)
T PRK10938 1 MSSLQISQGTFRLSDTK----TLQLPSLTLNAGDSWAFVGANGSGKSALARALAGELP---LLSGERQSQFSHITRLSFE 73 (490)
T ss_pred CceEEEEeEEEEcCCee----ecccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCC---CCCceEEECCcccccCCHH
Confidence 34799999999998766 9999999999999999999999999999999999999 99999999875431
Q ss_pred ---CeEEEEecCCCCC-Cc-----ccCCcccChHHHHHhcCCCCCccHHHHHHHHHHhhc--CCCccCCCCCCcCCCcch
Q 021362 150 ---DVATVLPMDGFHL-YL-----SQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVE 218 (313)
Q Consensus 150 ---~~i~~v~qd~~~~-~~-----~~ltv~e~~~~~~~~~~~~~~~~~~~~~~~l~~l~~--~~~~~~~~LSgG~kqRv~ 218 (313)
+.++|++|++... .. ..+++.+++.+. ....+++.++++.++. ..++++.+||||||||++
T Consensus 74 ~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~ 145 (490)
T PRK10938 74 QLQKLVSDEWQRNNTDMLSPGEDDTGRTTAEIIQDE--------VKDPARCEQLAQQFGITALLDRRFKYLSTGETRKTL 145 (490)
T ss_pred HHHHHhceeccCcchhhcccchhhccccHHHhcccc--------hhHHHHHHHHHHHcCCHhhhhCCcccCCHHHHHHHH
Confidence 2388999974321 10 124666654321 1234567888998884 346778899999999999
Q ss_pred hhhhhccCceEEEEcCCccccCh----hhHHHHHhhccc---eEEEEcChHHHHH---HHh----hcccccCCchHHH
Q 021362 219 DDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFDE---KWFIEVDLDTAMQ---RVL----KRHISTGKPPDVA 282 (313)
Q Consensus 219 ia~al~~~ar~Li~d~~~lllDE----~~~~~l~~l~~~---~i~vtHd~~~~~~---rv~----griv~~G~~~ev~ 282 (313)
||++++.++++|++|+|+..||. .+++.|.++.++ .|++|||++.+.. |++ |+++..|+++++.
T Consensus 146 la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tvii~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~ 223 (490)
T PRK10938 146 LCQALMSEPDLLILDEPFDGLDVASRQQLAELLASLHQSGITLVLVLNRFDEIPDFVQFAGVLADCTLAETGEREEIL 223 (490)
T ss_pred HHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHhhCCEEEEEECCEEEEeCCHHHHh
Confidence 99999999999999999999999 455666555432 4799999999876 554 8999889887764
|
|
| >PRK14257 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-33 Score=261.11 Aligned_cols=203 Identities=12% Similarity=0.085 Sum_probs=158.3
Q ss_pred cEEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhccc--CCCCceeecCCCCC-----
Q 021362 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKI--WPQKASSFDSQVKP----- 148 (313)
Q Consensus 76 ~~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~--~p~~G~i~~~g~~~----- 148 (313)
.+|+++|+++.|.+. ...+|+|+||+|++||++||+||||||||||+++|+|+.... .|++|+|.++|++.
T Consensus 79 ~~i~~~nls~~y~~~--~~~~L~~is~~I~~Ge~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~idG~~i~~~~~ 156 (329)
T PRK14257 79 NVFEIRNFNFWYMNR--TKHVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTRSKKI 156 (329)
T ss_pred ceEEEEeeEEEecCC--CceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccc
Confidence 379999999999631 122899999999999999999999999999999999998510 04799999999764
Q ss_pred -----CCeEEEEecCCCCCCcccCCcccChHHHHHhcCCCCCc-cHHHHHHHHHHhhc------CCCccCCCCCCcCCCc
Q 021362 149 -----PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTF-NPLLLLNCLKNLRN------QGSVYAPSFDHGVGDP 216 (313)
Q Consensus 149 -----~~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~~~~-~~~~~~~~l~~l~~------~~~~~~~~LSgG~kqR 216 (313)
...++|+||++..+ . .|+++|+.+.....+..... ..+.+.++++.++. ..+.+...||||||||
T Consensus 157 ~~~~lr~~i~~v~q~~~~~-~--~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~l~~~~~~~~~~LSgGqkqR 233 (329)
T PRK14257 157 SSLELRTRIGMVFQKPTPF-E--MSIFDNVAYGPRNNGINDRKILEKIVEKSLKSAALWDEVKDDLDKAGNALSGGQQQR 233 (329)
T ss_pred chHhhhccEEEEecCCccC-C--CcHHHHHHhHHHhcCCChHHHHHHHHHHHHHHcCCcchhhhhhhCCcccCCHHHHHH
Confidence 24599999997644 2 69999998764332222111 12234566666653 2345677999999999
Q ss_pred chhhhhhccCceEEEEcCCccccCh----hhHHHHHhhccc--eEEEEcChHHHHH---HHh----hcccccCCchHHHH
Q 021362 217 VEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFDE--KWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAK 283 (313)
Q Consensus 217 v~ia~al~~~ar~Li~d~~~lllDE----~~~~~l~~l~~~--~i~vtHd~~~~~~---rv~----griv~~G~~~ev~~ 283 (313)
++||+|++.++++|++|+++..||. .+.+.|+++.+. .++|||+++++.. |++ |++++.|.+.++..
T Consensus 234 l~LARAl~~~p~IlLLDEPts~LD~~~~~~i~~~i~~l~~~~Tii~iTH~l~~i~~~~Driivl~~G~i~e~g~~~~l~~ 313 (329)
T PRK14257 234 LCIARAIALEPEVLLMDEPTSALDPIATAKIEELILELKKKYSIIIVTHSMAQAQRISDETVFFYQGWIEEAGETKTIFI 313 (329)
T ss_pred HHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 9999999999999999999999999 455555555433 4799999999876 666 99999999999864
|
|
| >TIGR02770 nickel_nikD nickel import ATP-binding protein NikD | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-33 Score=250.46 Aligned_cols=185 Identities=16% Similarity=0.129 Sum_probs=148.3
Q ss_pred cccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCC----CCceeecCCCCC------CCeEEEEecCCCCCCcc
Q 021362 96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWP----QKASSFDSQVKP------PDVATVLPMDGFHLYLS 165 (313)
Q Consensus 96 ~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p----~~G~i~~~g~~~------~~~i~~v~qd~~~~~~~ 165 (313)
+|+|+||+|++|++++|+||||||||||+++|+|+++ | ++|+|.++|.+. .+.++|++|++...+.+
T Consensus 1 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---p~~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~ 77 (230)
T TIGR02770 1 LVQDLNLSLKRGEVLALVGESGSGKSLTCLAILGLLP---PGLTQTSGEILLDGRPLLPLSIRGRHIATIMQNPRTAFNP 77 (230)
T ss_pred CccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC---CccCccccEEEECCEechhhhhhhheeEEEecCchhhcCc
Confidence 5789999999999999999999999999999999998 8 899999999763 24699999996422333
Q ss_pred cCCcccChHHHHHhcCCCCCccHHHHHHHHHHhhcC-----CCccCCCCCCcCCCcchhhhhhccCceEEEEcCCccccC
Q 021362 166 QLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ-----GSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLD 240 (313)
Q Consensus 166 ~ltv~e~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~-----~~~~~~~LSgG~kqRv~ia~al~~~ar~Li~d~~~lllD 240 (313)
.+|+.+|+.+.....+.......+++.++++.++.. .+..+.+||||||||++||++++.++++|++|+|+..||
T Consensus 78 ~~t~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~vllLDEPt~~LD 157 (230)
T TIGR02770 78 LFTMGNHAIETLRSLGKLSKQARALILEALEAVGLPDPEEVLKKYPFQLSGGMLQRVMIALALLLEPPFLIADEPTTDLD 157 (230)
T ss_pred ccCHHHHHHHHHHHcCccHHHHHHHHHHHHHHcCCCchHHHHhCChhhcCHHHHHHHHHHHHHhcCCCEEEEcCCccccC
Confidence 578999987655443332223345678888888754 356777999999999999999999999999999999999
Q ss_pred h----hhHHHHHhhcc----ceEEEEcChHHHHH---HHh----hcccccCCchHHHH
Q 021362 241 G----GVWKDVSSMFD----EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAK 283 (313)
Q Consensus 241 E----~~~~~l~~l~~----~~i~vtHd~~~~~~---rv~----griv~~G~~~ev~~ 283 (313)
. .+++.|.++.+ ..+++|||++++.. |++ |++++.|+++++..
T Consensus 158 ~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 215 (230)
T TIGR02770 158 VVNQARVLKLLRELRQLFGTGILLITHDLGVVARIADEVAVMDDGRIVERGTVKEIFY 215 (230)
T ss_pred HHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHh
Confidence 9 45566666543 24699999999875 554 89999998887753
|
This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous. |
| >TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-33 Score=249.56 Aligned_cols=183 Identities=17% Similarity=0.076 Sum_probs=146.0
Q ss_pred EEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCC--------
Q 021362 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP-------- 148 (313)
Q Consensus 77 ~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~-------- 148 (313)
+|+++|+++.|+...+...+|+++||++++|++++|+||||||||||+++|+|+++ |++|+|.++|.+.
T Consensus 1 ~l~~~~l~~~~~~~~~~~~il~~vs~~i~~G~~~~I~G~nGsGKStLl~~l~G~~~---~~~G~i~~~g~~~~~~~~~~~ 77 (220)
T TIGR02982 1 VISIRNLNHYYGHGSLRKQVLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRS---VQEGSLKVLGQELYGASEKEL 77 (220)
T ss_pred CEEEEEEEEEccCCCcceeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCeEEEECCEEhHhcCHhHH
Confidence 37899999999752112339999999999999999999999999999999999999 9999999998753
Q ss_pred ---CCeEEEEecCCCCCCcccCCcccChHHHHHhcC-CCCCccHHHHHHHHHHhhcC--CCccCCCCCCcCCCcchhhhh
Q 021362 149 ---PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRG-APWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDIL 222 (313)
Q Consensus 149 ---~~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~-~~~~~~~~~~~~~l~~l~~~--~~~~~~~LSgG~kqRv~ia~a 222 (313)
...++|++|++..+. .+|+.+|+.+...... .......+++.++++.++.. .+..+.+||+||+||++||++
T Consensus 78 ~~~~~~i~~~~q~~~~~~--~~t~~~n~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrv~lara 155 (220)
T TIGR02982 78 VQLRRNIGYIFQAHNLLG--FLTARQNVQMALELQPNLSYQEARERARAMLEAVGLGDHLDYYPHNLSGGQKQRVAIARA 155 (220)
T ss_pred HHHHhheEEEcCChhhcC--CCCHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHH
Confidence 245999999965443 4799999988654332 22222344678888888843 455677999999999999999
Q ss_pred hccCceEEEEcCCccccCh----hhHHHHHhhcc----ceEEEEcChHHH
Q 021362 223 VGLQHKVVIVDGNYLFLDG----GVWKDVSSMFD----EKWFIEVDLDTA 264 (313)
Q Consensus 223 l~~~ar~Li~d~~~lllDE----~~~~~l~~l~~----~~i~vtHd~~~~ 264 (313)
++.++++|++|+|+..||. .+++.|+++.+ ..+++|||++..
T Consensus 156 l~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sh~~~~~ 205 (220)
T TIGR02982 156 LVHRPKLVLADEPTAALDSKSGRDVVELMQKLAREQGCTILIVTHDNRIL 205 (220)
T ss_pred HhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHH
Confidence 9999999999999999999 44566665543 247999999854
|
Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts. |
| >cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-33 Score=244.64 Aligned_cols=174 Identities=16% Similarity=0.039 Sum_probs=142.1
Q ss_pred EEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCC-------CC
Q 021362 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP-------PD 150 (313)
Q Consensus 78 l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~-------~~ 150 (313)
|+++|+++.|++.. +|+++||+|++|+++||+|+||||||||+++|+|+++ |++|+|.++|.+. .+
T Consensus 1 l~i~~l~~~~~~~~----~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~~~~~~~~~~~ 73 (201)
T cd03231 1 LEADELTCERDGRA----LFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSP---PLAGRVLLNGGPLDFQRDSIAR 73 (201)
T ss_pred CEEEEEEEEeCCce----eeccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCcEEEECCEecccccHHhhh
Confidence 47899999998766 9999999999999999999999999999999999999 9999999998653 23
Q ss_pred eEEEEecCCCCCCcccCCcccChHHHHHhcCCCCCccHHHHHHHHHHhhcC--CCccCCCCCCcCCCcchhhhhhccCce
Q 021362 151 VATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGLQHK 228 (313)
Q Consensus 151 ~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~~~~~LSgG~kqRv~ia~al~~~ar 228 (313)
.++|++|++..++ .+|+.||+.+.... ...+++.++++.++.. .+.++.+|||||+||+++|++++.+++
T Consensus 74 ~i~~~~q~~~~~~--~~tv~e~l~~~~~~------~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~ 145 (201)
T cd03231 74 GLLYLGHAPGIKT--TLSVLENLRFWHAD------HSDEQVEEALARVGLNGFEDRPVAQLSAGQQRRVALARLLLSGRP 145 (201)
T ss_pred heEEeccccccCC--CcCHHHHHHhhccc------ccHHHHHHHHHHcCChhhhcCchhhCCHHHHHHHHHHHHHhcCCC
Confidence 5899999854333 47999998775311 1345678888888743 456777999999999999999999999
Q ss_pred EEEEcCCccccCh----hhHHHHHhhccc---eEEEEcChHHHHH
Q 021362 229 VVIVDGNYLFLDG----GVWKDVSSMFDE---KWFIEVDLDTAMQ 266 (313)
Q Consensus 229 ~Li~d~~~lllDE----~~~~~l~~l~~~---~i~vtHd~~~~~~ 266 (313)
++++|+|+..||. .+.+.|.++.+. .+++|||......
T Consensus 146 llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~~~~~ 190 (201)
T cd03231 146 LWILDEPTTALDKAGVARFAEAMAGHCARGGMVVLTTHQDLGLSE 190 (201)
T ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCchhhhh
Confidence 9999999999999 445555444322 4699998876654
|
The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE. |
| >COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-33 Score=283.14 Aligned_cols=194 Identities=14% Similarity=0.112 Sum_probs=159.8
Q ss_pred EEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCC--------
Q 021362 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP-------- 148 (313)
Q Consensus 77 ~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~-------- 148 (313)
-|+++|+++.|+... ..+|+|+||+|++||++||+|+||||||||+|+|.|++. |++|+|.+||.+.
T Consensus 471 ~I~~~nvsf~y~~~~--~~vL~~isL~I~~Ge~vaIvG~SGsGKSTL~KLL~gly~---p~~G~I~~dg~dl~~i~~~~l 545 (709)
T COG2274 471 EIEFENVSFRYGPDD--PPVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYK---PQQGRILLDGVDLNDIDLASL 545 (709)
T ss_pred eEEEEEEEEEeCCCC--cchhhceeEEeCCCCEEEEECCCCCCHHHHHHHHhcCCC---CCCceEEECCEeHHhcCHHHH
Confidence 499999999998752 249999999999999999999999999999999999999 9999999999873
Q ss_pred CCeEEEEecCCCCCCcccCCcccChHHHHHhcCCCCCccHHHHHHHHHHhh---------cCCCc----cCCCCCCcCCC
Q 021362 149 PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLR---------NQGSV----YAPSFDHGVGD 215 (313)
Q Consensus 149 ~~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~~~~~~~~~~~~l~~l~---------~~~~~----~~~~LSgG~kq 215 (313)
++.++||+||++.+. -|++||+.+. .|... .+.+.++++.-+ .+-+. ....|||||||
T Consensus 546 R~~ig~V~Q~~~Lf~---gSI~eNi~l~-----~p~~~-~e~i~~A~~~ag~~~fI~~lP~gy~t~v~E~G~~LSGGQrQ 616 (709)
T COG2274 546 RRQVGYVLQDPFLFS---GSIRENIALG-----NPEAT-DEEIIEAAQLAGAHEFIENLPMGYDTPVGEGGANLSGGQRQ 616 (709)
T ss_pred HhheeEEcccchhhc---CcHHHHHhcC-----CCCCC-HHHHHHHHHHhCcHHHHHhcccccccccccCCCCCCHHHHH
Confidence 457999999977655 4999999764 23322 344444444433 12222 33489999999
Q ss_pred cchhhhhhccCceEEEEcCCccccCh----hhHHHHHhhc--cceEEEEcChHHHHH--HHh----hcccccCCchHHHH
Q 021362 216 PVEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMF--DEKWFIEVDLDTAMQ--RVL----KRHISTGKPPDVAK 283 (313)
Q Consensus 216 Rv~ia~al~~~ar~Li~d~~~lllDE----~~~~~l~~l~--~~~i~vtHd~~~~~~--rv~----griv~~G~~~ev~~ 283 (313)
|++||||+.+++++|++||++.-||+ .+.+.|.++. ...|+|+|.+..+.. |++ |+++++|+.+|+..
T Consensus 617 rlalARaLl~~P~ILlLDEaTSaLD~~sE~~I~~~L~~~~~~~T~I~IaHRl~ti~~adrIiVl~~Gkiv~~gs~~ell~ 696 (709)
T COG2274 617 RLALARALLSKPKILLLDEATSALDPETEAIILQNLLQILQGRTVIIIAHRLSTIRSADRIIVLDQGKIVEQGSHEELLA 696 (709)
T ss_pred HHHHHHHhccCCCEEEEeCcccccCHhHHHHHHHHHHHHhcCCeEEEEEccchHhhhccEEEEccCCceeccCCHHHHHH
Confidence 99999999999999999999999999 5666666776 446899999999998 666 99999999999977
Q ss_pred H
Q 021362 284 W 284 (313)
Q Consensus 284 ~ 284 (313)
.
T Consensus 697 ~ 697 (709)
T COG2274 697 Q 697 (709)
T ss_pred h
Confidence 5
|
|
| >PRK14263 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.7e-33 Score=251.38 Aligned_cols=197 Identities=12% Similarity=0.074 Sum_probs=157.9
Q ss_pred cEEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCC-----CCceeecCCCCC--
Q 021362 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWP-----QKASSFDSQVKP-- 148 (313)
Q Consensus 76 ~~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p-----~~G~i~~~g~~~-- 148 (313)
+.+.++++++.|++.. +|+++||+|++|++++|+|+||||||||+++|+|+++ | ++|+|.++|.+.
T Consensus 7 ~~~~~~~~~~~~~~~~----~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---p~~~~~~~G~i~~~g~~i~~ 79 (261)
T PRK14263 7 IVMDCKLDKIFYGNFM----AVRDSHVPIRKNEITGFIGPSGCGKSTVLRSLNRMND---LVKGFRFEGHVHFLGQDVYG 79 (261)
T ss_pred ceEEEEeEEEEeCCEE----EEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcccc---cccCCCCceEEEECCEeccc
Confidence 4689999999998766 9999999999999999999999999999999999997 6 799999999653
Q ss_pred --------CCeEEEEecCCCCCCcccCCcccChHHHHHhcCCCCCccHHHHHHHHHHhhcC------CCccCCCCCCcCC
Q 021362 149 --------PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ------GSVYAPSFDHGVG 214 (313)
Q Consensus 149 --------~~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~------~~~~~~~LSgG~k 214 (313)
.+.++|++|++..+ . +|+.||+.+.....+.. ....+++.++++.++.. .+.++.+||+||+
T Consensus 80 ~~~~~~~~~~~i~~v~q~~~~~-~--~tv~enl~~~~~~~~~~-~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~G~~ 155 (261)
T PRK14263 80 KGVDPVVVRRYIGMVFQQPNPF-S--MSIFDNVAFGLRLNRYK-GDLGDRVKHALQGAALWDEVKDKLKVSGLSLSGGQQ 155 (261)
T ss_pred cccchHhhhhceEEEecCCccc-c--ccHHHHHHHHHhhcCch-HHHHHHHHHHHHHcCCchhhhhhhhCCcccCCHHHH
Confidence 23489999996543 2 79999998875443321 22345677788877642 2345669999999
Q ss_pred CcchhhhhhccCceEEEEcCCccccCh----hhHHHHHhhccc--eEEEEcChHHHHH---HH--h----------hccc
Q 021362 215 DPVEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFDE--KWFIEVDLDTAMQ---RV--L----------KRHI 273 (313)
Q Consensus 215 qRv~ia~al~~~ar~Li~d~~~lllDE----~~~~~l~~l~~~--~i~vtHd~~~~~~---rv--~----------griv 273 (313)
||++||+|++.++++|++|+|+..||. .+++.|+++.+. .+++|||++++.. |+ + |+++
T Consensus 156 qrv~laral~~~p~llllDEPtsgLD~~~~~~l~~~l~~~~~~~tii~isH~~~~i~~~~d~v~~l~~~~~~~~~~G~i~ 235 (261)
T PRK14263 156 QRLCIARAIATEPEVLLLDEPCSALDPIATRRVEELMVELKKDYTIALVTHNMQQAIRVADTTAFFSVDISQGTRTGYLV 235 (261)
T ss_pred HHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEecccccccCCceEE
Confidence 999999999999999999999999999 556666665432 4699999998876 32 2 6788
Q ss_pred ccCCchHHHH
Q 021362 274 STGKPPDVAK 283 (313)
Q Consensus 274 ~~G~~~ev~~ 283 (313)
+.|+++++..
T Consensus 236 ~~g~~~~~~~ 245 (261)
T PRK14263 236 EMGPTAQIFQ 245 (261)
T ss_pred EeCCHHHHHh
Confidence 8888887754
|
|
| >PRK14264 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.1e-32 Score=256.27 Aligned_cols=201 Identities=13% Similarity=0.104 Sum_probs=157.1
Q ss_pred cEEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhccc--CCCCceeecCCCCC-----
Q 021362 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKI--WPQKASSFDSQVKP----- 148 (313)
Q Consensus 76 ~~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~--~p~~G~i~~~g~~~----- 148 (313)
++|+++|+++.|++.. +|+++||+|++|++++|+||||||||||+++|+|+++.. +|++|+|.++|.+.
T Consensus 44 ~~l~i~nl~~~~~~~~----iL~~is~~i~~Ge~~~IvG~nGsGKSTLl~~L~Gl~~~~~~~p~~G~I~i~g~~i~~~~~ 119 (305)
T PRK14264 44 AKLSVEDLDVYYGDDH----ALKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDGQDIYQDGV 119 (305)
T ss_pred ceEEEEEEEEEeCCee----eeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccc
Confidence 3799999999998766 999999999999999999999999999999999998510 15899999998643
Q ss_pred -----CCeEEEEecCCCCCCcccCCcccChHHHHHhcC------------CCC-CccHHHHHHHHHHhhc------CCCc
Q 021362 149 -----PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRG------------APW-TFNPLLLLNCLKNLRN------QGSV 204 (313)
Q Consensus 149 -----~~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~------------~~~-~~~~~~~~~~l~~l~~------~~~~ 204 (313)
.+.++|++|+... +. .|++||+.+.....+ ... ....+++.++++.++. ..+.
T Consensus 120 ~~~~~~~~i~~v~q~~~l-~~--~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~ 196 (305)
T PRK14264 120 NLVELRKRVGMVFQSPNP-FP--KSIRENISYGPRKHGDINTGLLARLLGRDDKDAEDELVERSLRQAALWDEVNDRLDD 196 (305)
T ss_pred cHHHHhhceEEEccCCcc-cc--ccHHHHHHhHHhhcccccccccccccccCchHHHHHHHHHHHHHcCCchhhhHHhcC
Confidence 1358999999643 33 599999987643221 111 1123456677777753 2355
Q ss_pred cCCCCCCcCCCcchhhhhhccCceEEEEcCCccccCh----hhHHHHHhhccc--eEEEEcChHHHHH---HH-h----h
Q 021362 205 YAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFDE--KWFIEVDLDTAMQ---RV-L----K 270 (313)
Q Consensus 205 ~~~~LSgG~kqRv~ia~al~~~ar~Li~d~~~lllDE----~~~~~l~~l~~~--~i~vtHd~~~~~~---rv-~----g 270 (313)
++.+|||||+||++||++++.++++|++|+|+..||. .+++.|+++.+. .|++|||++++.. |+ + |
T Consensus 197 ~~~~LSgGq~qrv~LAraL~~~p~lLLLDEPtsgLD~~~~~~l~~~L~~~~~~~tiiivtH~~~~i~~~~d~i~~~l~~G 276 (305)
T PRK14264 197 NALGLSGGQQQRLCIARCLAVDPEVILMDEPASALDPIATSKIEDLIEELAEEYTVVVVTHNMQQAARISDQTAVFLTGG 276 (305)
T ss_pred ccccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEEcCHHHHHHhcCEEEEEecCC
Confidence 6779999999999999999999999999999999999 455555555443 4799999999876 53 2 8
Q ss_pred cccccCCchHHHH
Q 021362 271 RHISTGKPPDVAK 283 (313)
Q Consensus 271 riv~~G~~~ev~~ 283 (313)
++++.|+++++..
T Consensus 277 ~i~~~g~~~~~~~ 289 (305)
T PRK14264 277 ELVEYDDTDKIFE 289 (305)
T ss_pred EEEEeCCHHHHHh
Confidence 9999998887743
|
|
| >cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.6e-33 Score=252.16 Aligned_cols=197 Identities=15% Similarity=0.110 Sum_probs=148.4
Q ss_pred EEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCC--------C
Q 021362 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP--------P 149 (313)
Q Consensus 78 l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~--------~ 149 (313)
|+++|+++.|++.. ..+|+++||++++|++++|+||||||||||+++|+|+++ |++|+|.++|.+. .
T Consensus 1 i~~~~l~~~~~~~~--~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---p~~G~i~~~g~~~~~~~~~~~~ 75 (234)
T cd03251 1 VEFKNVTFRYPGDG--PPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYD---VDSGRILIDGHDVRDYTLASLR 75 (234)
T ss_pred CEEEEEEEEeCCCC--ccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcccc---CCCCEEEECCEEhhhCCHHHHH
Confidence 46899999997641 128999999999999999999999999999999999999 9999999999653 2
Q ss_pred CeEEEEecCCCCCCcccCCcccChHHHHHhcCCCCCccHH-----HHHHHHHHh--h--cCCCccCCCCCCcCCCcchhh
Q 021362 150 DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPL-----LLLNCLKNL--R--NQGSVYAPSFDHGVGDPVEDD 220 (313)
Q Consensus 150 ~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~~~~~~~-----~~~~~l~~l--~--~~~~~~~~~LSgG~kqRv~ia 220 (313)
+.++|++|++..+ . .|+.||+.+..... ....... .+.++++.+ + ...+.++.+||+||+||++||
T Consensus 76 ~~i~~~~q~~~~~-~--~tv~enl~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~LS~G~~qrv~la 150 (234)
T cd03251 76 RQIGLVSQDVFLF-N--DTVAENIAYGRPGA--TREEVEEAARAANAHEFIMELPEGYDTVIGERGVKLSGGQRQRIAIA 150 (234)
T ss_pred hhEEEeCCCCeec-c--ccHHHHhhccCCCC--CHHHHHHHHHHcCcHHHHHhcccCcceeeccCCCcCCHHHHHHHHHH
Confidence 3589999996543 2 59999987643211 1000000 122333333 1 123456679999999999999
Q ss_pred hhhccCceEEEEcCCccccCh----hhHHHHHhhccc--eEEEEcChHHHHH--HHh----hcccccCCchHHHHH
Q 021362 221 ILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFDE--KWFIEVDLDTAMQ--RVL----KRHISTGKPPDVAKW 284 (313)
Q Consensus 221 ~al~~~ar~Li~d~~~lllDE----~~~~~l~~l~~~--~i~vtHd~~~~~~--rv~----griv~~G~~~ev~~~ 284 (313)
++++.+++++++|+|+..||. .+.+.|+++.+. .|++|||++++.. |++ |++++.|+++++...
T Consensus 151 ~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~ 226 (234)
T cd03251 151 RALLKDPPILILDEATSALDTESERLVQAALERLMKNRTTFVIAHRLSTIENADRIVVLEDGKIVERGTHEELLAQ 226 (234)
T ss_pred HHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHhhCCEEEEecCCeEeeeCCHHHHHHc
Confidence 999999999999999999999 455555555432 4699999999866 544 888888887776443
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK15064 ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.1e-32 Score=274.33 Aligned_cols=194 Identities=13% Similarity=0.074 Sum_probs=157.3
Q ss_pred cEEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCCCCeEEEE
Q 021362 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVL 155 (313)
Q Consensus 76 ~~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~~~~i~~v 155 (313)
++|+++|+++.|++.. +|+++||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|. ..++|+
T Consensus 318 ~~l~~~~l~~~~~~~~----~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~---p~~G~i~~~~~---~~i~~~ 387 (530)
T PRK15064 318 NALEVENLTKGFDNGP----LFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELE---PDSGTVKWSEN---ANIGYY 387 (530)
T ss_pred ceEEEEeeEEeeCCce----eecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCeEEEECCc---eEEEEE
Confidence 4799999999998766 9999999999999999999999999999999999999 99999999874 469999
Q ss_pred ecCCCCCCcccCCcccChHHHHHhcCCCCCccHHHHHHHHHHhhc---CCCccCCCCCCcCCCcchhhhhhccCceEEEE
Q 021362 156 PMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN---QGSVYAPSFDHGVGDPVEDDILVGLQHKVVIV 232 (313)
Q Consensus 156 ~qd~~~~~~~~ltv~e~~~~~~~~~~~~~~~~~~~~~~~l~~l~~---~~~~~~~~LSgG~kqRv~ia~al~~~ar~Li~ 232 (313)
+|+....+...+|+.+|+.+.. . .....+++.++++.++. ..++++.+||||||||++||++++.++++|++
T Consensus 388 ~q~~~~~~~~~~t~~~~~~~~~---~--~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la~al~~~p~lllL 462 (530)
T PRK15064 388 AQDHAYDFENDLTLFDWMSQWR---Q--EGDDEQAVRGTLGRLLFSQDDIKKSVKVLSGGEKGRMLFGKLMMQKPNVLVM 462 (530)
T ss_pred cccccccCCCCCcHHHHHHHhc---c--CCccHHHHHHHHHHcCCChhHhcCcccccCHHHHHHHHHHHHHhcCCCEEEE
Confidence 9986422333578988875421 1 12234567888998875 24677889999999999999999999999999
Q ss_pred cCCccccCh----hhHHHHHhhccceEEEEcChHHHHH---HHh----hccc-ccCCchHHHHH
Q 021362 233 DGNYLFLDG----GVWKDVSSMFDEKWFIEVDLDTAMQ---RVL----KRHI-STGKPPDVAKW 284 (313)
Q Consensus 233 d~~~lllDE----~~~~~l~~l~~~~i~vtHd~~~~~~---rv~----griv-~~G~~~ev~~~ 284 (313)
|+|+..||. .+++.|+++....|+||||++++.. |++ |+++ ..|++.++...
T Consensus 463 DEPt~~LD~~~~~~l~~~l~~~~~tvi~vsHd~~~~~~~~d~i~~l~~g~i~~~~g~~~~~~~~ 526 (530)
T PRK15064 463 DEPTNHMDMESIESLNMALEKYEGTLIFVSHDREFVSSLATRIIEITPDGVVDFSGTYEEYLRS 526 (530)
T ss_pred cCCCCCCCHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEcCCCHHHHHHH
Confidence 999999999 4455555543335799999999887 554 7887 67888776543
|
|
| >TIGR01257 rim_protein retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Probab=99.98 E-value=6.2e-33 Score=303.26 Aligned_cols=199 Identities=17% Similarity=0.190 Sum_probs=169.1
Q ss_pred cEEEEccceEEcc--ccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCC-----
Q 021362 76 PVVEARCMDEVYD--ALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP----- 148 (313)
Q Consensus 76 ~~l~~~~l~~~y~--~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~----- 148 (313)
+.|+++||+|.|+ ++. +|+|+||++++||+++|+||||||||||+++|+|+++ |++|+|.++|.+.
T Consensus 927 ~~L~I~nLsK~y~~~~k~----aL~~lsl~I~~Gei~aLLG~NGAGKSTLLkiLaGLl~---PtsG~I~i~G~dI~~~~~ 999 (2272)
T TIGR01257 927 PGVCVKNLVKIFEPSGRP----AVDRLNITFYENQITAFLGHNGAGKTTTLSILTGLLP---PTSGTVLVGGKDIETNLD 999 (2272)
T ss_pred ceEEEEeEEEEecCCCce----EEEeeEEEEcCCcEEEEECCCCChHHHHHHHHhcCCC---CCceEEEECCEECcchHH
Confidence 4799999999995 334 9999999999999999999999999999999999999 9999999999764
Q ss_pred --CCeEEEEecCCCCCCcccCCcccChHHHHHhcCCCCCccHHHHHHHHHHhhc--CCCccCCCCCCcCCCcchhhhhhc
Q 021362 149 --PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDILVG 224 (313)
Q Consensus 149 --~~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~~~~~~~~~~~~l~~l~~--~~~~~~~~LSgG~kqRv~ia~al~ 224 (313)
++.+||++|++..+. .+|+.||+.+....++.+.....+++.++++.++. ..++++.+||||||||++||+|++
T Consensus 1000 ~~r~~IG~~pQ~~~L~~--~LTV~E~L~f~~~lkg~~~~~~~~~v~~lL~~vgL~~~~~~~~~~LSGGqKQRLsLArALi 1077 (2272)
T TIGR01257 1000 AVRQSLGMCPQHNILFH--HLTVAEHILFYAQLKGRSWEEAQLEMEAMLEDTGLHHKRNEEAQDLSGGMQRKLSVAIAFV 1077 (2272)
T ss_pred HHhhcEEEEecCCcCCC--CCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHH
Confidence 245899999965443 58999999998776665544445678889999884 346678899999999999999999
Q ss_pred cCceEEEEcCCccccCh----hhHHHHHhhccc--eEEEEcChHHHHH---HHh----hcccccCCchHHHH
Q 021362 225 LQHKVVIVDGNYLFLDG----GVWKDVSSMFDE--KWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAK 283 (313)
Q Consensus 225 ~~ar~Li~d~~~lllDE----~~~~~l~~l~~~--~i~vtHd~~~~~~---rv~----griv~~G~~~ev~~ 283 (313)
.++++|++|+|+..||+ .+|+.|+++.+. ++++|||++++.. |++ |+++..|++.++.+
T Consensus 1078 ~~PkVLLLDEPTSGLDp~sr~~l~~lL~~l~~g~TIIltTHdmdea~~laDrI~iL~~GkL~~~Gs~~~Lk~ 1149 (2272)
T TIGR01257 1078 GDAKVVVLDEPTSGVDPYSRRSIWDLLLKYRSGRTIIMSTHHMDEADLLGDRIAIISQGRLYCSGTPLFLKN 1149 (2272)
T ss_pred cCCCEEEEECCCcCCCHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhCCEEEEEECCEEEEecCHHHHHH
Confidence 99999999999999999 677777777432 4799999999986 655 99999999887754
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease. |
| >PRK15064 ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.4e-32 Score=273.64 Aligned_cols=194 Identities=12% Similarity=0.051 Sum_probs=154.1
Q ss_pred EEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCCCCeEEEEe
Q 021362 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLP 156 (313)
Q Consensus 77 ~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~~~~i~~v~ 156 (313)
||+++|+++.|++.. +|+|+||+|++|++++|+||||||||||+|+|+|+++ |++|+|.++|. ..++|++
T Consensus 1 ml~i~~ls~~~~~~~----il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~---p~~G~i~~~~~---~~i~~~~ 70 (530)
T PRK15064 1 MLSTANITMQFGAKP----LFENISVKFGGGNRYGLIGANGCGKSTFMKILGGDLE---PSAGNVSLDPN---ERLGKLR 70 (530)
T ss_pred CEEEEEEEEEeCCcE----eEeCCEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCceEEecCC---CEEEEEe
Confidence 489999999998766 9999999999999999999999999999999999999 99999999873 4589999
Q ss_pred cCCCCCCcccCCcccChHHHHHh-----------cCCCC---------------------CccHHHHHHHHHHhhcCC--
Q 021362 157 MDGFHLYLSQLDAMEDPKEAHAR-----------RGAPW---------------------TFNPLLLLNCLKNLRNQG-- 202 (313)
Q Consensus 157 qd~~~~~~~~ltv~e~~~~~~~~-----------~~~~~---------------------~~~~~~~~~~l~~l~~~~-- 202 (313)
|++..+. .+|+.||+.++... .+.+. .....++.++++.++...
T Consensus 71 q~~~~~~--~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~ 148 (530)
T PRK15064 71 QDQFAFE--EFTVLDTVIMGHTELWEVKQERDRIYALPEMSEEDGMKVADLEVKFAEMDGYTAEARAGELLLGVGIPEEQ 148 (530)
T ss_pred ccCCcCC--CCcHHHHHHHhhHHHHHHHHHHHHHhcccccccchHHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCChhH
Confidence 9865333 48999998764210 01110 012345677888888532
Q ss_pred -CccCCCCCCcCCCcchhhhhhccCceEEEEcCCccccChhhHHHHHhhcc----ceEEEEcChHHHHH---HHh----h
Q 021362 203 -SVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFD----EKWFIEVDLDTAMQ---RVL----K 270 (313)
Q Consensus 203 -~~~~~~LSgG~kqRv~ia~al~~~ar~Li~d~~~lllDE~~~~~l~~l~~----~~i~vtHd~~~~~~---rv~----g 270 (313)
+.++.+|||||||||+||++++.++++|++|+|+..||....+.+.++.. .+|+||||++++.. |++ |
T Consensus 149 ~~~~~~~LSgGq~qrv~lA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~tiiivsHd~~~~~~~~d~i~~l~~g 228 (530)
T PRK15064 149 HYGLMSEVAPGWKLRVLLAQALFSNPDILLLDEPTNNLDINTIRWLEDVLNERNSTMIIISHDRHFLNSVCTHMADLDYG 228 (530)
T ss_pred hcCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHhCCCeEEEEeCCHHHHHhhcceEEEEeCC
Confidence 34677999999999999999999999999999999999955544444432 24799999999876 555 8
Q ss_pred ccc-ccCCchHHH
Q 021362 271 RHI-STGKPPDVA 282 (313)
Q Consensus 271 riv-~~G~~~ev~ 282 (313)
+++ ..|.++++.
T Consensus 229 ~i~~~~g~~~~~~ 241 (530)
T PRK15064 229 ELRVYPGNYDEYM 241 (530)
T ss_pred EEEEecCCHHHHH
Confidence 884 688887664
|
|
| >CHL00131 ycf16 sulfate ABC transporter protein; Validated | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.1e-32 Score=249.49 Aligned_cols=195 Identities=16% Similarity=0.085 Sum_probs=151.1
Q ss_pred cEEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHH--hcccCCCCceeecCCCCCC----
Q 021362 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRR--INKIWPQKASSFDSQVKPP---- 149 (313)
Q Consensus 76 ~~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl--~~~~~p~~G~i~~~g~~~~---- 149 (313)
++|+++|+++.|++.. +|+++||+|++||+++|+|+||||||||+++|+|+ ++ |++|+|.++|.+..
T Consensus 6 ~~l~~~~l~~~~~~~~----~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~---~~~G~i~~~g~~~~~~~~ 78 (252)
T CHL00131 6 PILEIKNLHASVNENE----ILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYK---ILEGDILFKGESILDLEP 78 (252)
T ss_pred ceEEEEeEEEEeCCEE----eeecceeEEcCCcEEEEECCCCCCHHHHHHHHcCCCcCc---CCCceEEECCEEcccCCh
Confidence 3799999999998655 99999999999999999999999999999999998 46 99999999986531
Q ss_pred ----C-eEEEEecCCCCCCcccCCcccChHHHHHhc----CCCCC---ccHHHHHHHHHHhhcC---CCccCC-CCCCcC
Q 021362 150 ----D-VATVLPMDGFHLYLSQLDAMEDPKEAHARR----GAPWT---FNPLLLLNCLKNLRNQ---GSVYAP-SFDHGV 213 (313)
Q Consensus 150 ----~-~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~----~~~~~---~~~~~~~~~l~~l~~~---~~~~~~-~LSgG~ 213 (313)
+ .++|++|++..+. .+++.+++.+..... +.... ...+++.++++.++.. .+..+. .|||||
T Consensus 79 ~~~~~~~~~~~~q~~~~~~--~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgG~ 156 (252)
T CHL00131 79 EERAHLGIFLAFQYPIEIP--GVSNADFLRLAYNSKRKFQGLPELDPLEFLEIINEKLKLVGMDPSFLSRNVNEGFSGGE 156 (252)
T ss_pred hhhheeeEEEEeccccccc--cccHHHHHHHhhhhhhcccccccccHHHHHHHHHHHHHHcCCchhhhccccccCCCHHH
Confidence 1 3678999865433 468888877643221 11110 1124566778887743 345565 599999
Q ss_pred CCcchhhhhhccCceEEEEcCCccccCh----hhHHHHHhhcc---ceEEEEcChHHHHH----HHh----hcccccCCc
Q 021362 214 GDPVEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFD---EKWFIEVDLDTAMQ----RVL----KRHISTGKP 278 (313)
Q Consensus 214 kqRv~ia~al~~~ar~Li~d~~~lllDE----~~~~~l~~l~~---~~i~vtHd~~~~~~----rv~----griv~~G~~ 278 (313)
+||++||++++.++++|++|+|+..||. .+++.|+++.+ ..|++|||++++.. |++ |++++.|++
T Consensus 157 ~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~~tH~~~~~~~~~~d~i~~l~~G~i~~~~~~ 236 (252)
T CHL00131 157 KKRNEILQMALLDSELAILDETDSGLDIDALKIIAEGINKLMTSENSIILITHYQRLLDYIKPDYVHVMQNGKIIKTGDA 236 (252)
T ss_pred HHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhhhCCEEEEEeCCEEEEecCh
Confidence 9999999999999999999999999999 45566665543 24799999998763 443 889888887
Q ss_pred h
Q 021362 279 P 279 (313)
Q Consensus 279 ~ 279 (313)
+
T Consensus 237 ~ 237 (252)
T CHL00131 237 E 237 (252)
T ss_pred h
Confidence 6
|
|
| >COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.4e-32 Score=241.16 Aligned_cols=202 Identities=14% Similarity=0.134 Sum_probs=161.6
Q ss_pred cEEEEccceEEcccc--------------------ccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccC
Q 021362 76 PVVEARCMDEVYDAL--------------------AQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIW 135 (313)
Q Consensus 76 ~~l~~~~l~~~y~~~--------------------~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~ 135 (313)
++|+++||+|.|.-. .....+|+||||++++||.+||+|+||||||||+|+|+|.++
T Consensus 2 ~~I~~~~V~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aL~disf~i~~Ge~vGiiG~NGaGKSTLlkliaGi~~--- 78 (249)
T COG1134 2 VVIKVSNVSKKFRIYHEKSYSLKKRLKGLAKGGRKVAEFWALKDISFEIYKGERVGIIGHNGAGKSTLLKLIAGIYK--- 78 (249)
T ss_pred cEEEeeceeEEEecchhhhhhHHHHHHHHhcCCCCcceEEEecCceEEEeCCCEEEEECCCCCcHHHHHHHHhCccC---
Confidence 457777777766321 234569999999999999999999999999999999999999
Q ss_pred CCCceeecCCCCCCCeEEEEecCCCCCCcccCCcccChHHHHHhcCCCCCccHHHHHHHHH--HhhcCCCccCCCCCCcC
Q 021362 136 PQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLK--NLRNQGSVYAPSFDHGV 213 (313)
Q Consensus 136 p~~G~i~~~g~~~~~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~~~~~~~~~~~~l~--~l~~~~~~~~~~LSgG~ 213 (313)
|++|+|.++|+ ++.+..-+.- +++++|.+||+.+.....|+...+..+++.++.+ .||...+.++..||-||
T Consensus 79 Pt~G~v~v~G~-----v~~li~lg~G-f~pelTGreNi~l~~~~~G~~~~ei~~~~~eIieFaELG~fi~~PvktYSSGM 152 (249)
T COG1134 79 PTSGKVKVTGK-----VAPLIELGAG-FDPELTGRENIYLRGLILGLTRKEIDEKVDEIIEFAELGDFIDQPVKTYSSGM 152 (249)
T ss_pred CCCceEEEcce-----EehhhhcccC-CCcccchHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHhhCchhhccHHH
Confidence 99999999885 2222222112 2346999999999988889888777788877766 45577888999999999
Q ss_pred CCcchhhhhhccCceEEEEcCCccccCh----hhHHHHHhhcc---ceEEEEcChHHHHH---HHh----hcccccCCch
Q 021362 214 GDPVEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFD---EKWFIEVDLDTAMQ---RVL----KRHISTGKPP 279 (313)
Q Consensus 214 kqRv~ia~al~~~ar~Li~d~~~lllDE----~~~~~l~~l~~---~~i~vtHd~~~~~~---rv~----griv~~G~~~ 279 (313)
+-|++++.++..++.+|++|+-+..-|+ +..+.+.++.. ..++||||++.+.+ |++ |++...|.++
T Consensus 153 ~aRLaFsia~~~~pdILllDEvlavGD~~F~~K~~~rl~e~~~~~~tiv~VSHd~~~I~~~Cd~~i~l~~G~i~~~G~~~ 232 (249)
T COG1134 153 YARLAFSVATHVEPDILLLDEVLAVGDAAFQEKCLERLNELVEKNKTIVLVSHDLGAIKQYCDRAIWLEHGQIRMEGSPE 232 (249)
T ss_pred HHHHHHhhhhhcCCCEEEEehhhhcCCHHHHHHHHHHHHHHHHcCCEEEEEECCHHHHHHhcCeeEEEeCCEEEEcCCHH
Confidence 9999999988888888888888888888 34444555522 24799999999998 666 9999999999
Q ss_pred HHHHHHH
Q 021362 280 DVAKWRI 286 (313)
Q Consensus 280 ev~~~~~ 286 (313)
+++..+.
T Consensus 233 ~vi~~Y~ 239 (249)
T COG1134 233 EVIPAYE 239 (249)
T ss_pred HHHHHHH
Confidence 9988753
|
|
| >COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.98 E-value=2.3e-32 Score=253.19 Aligned_cols=210 Identities=15% Similarity=0.145 Sum_probs=175.2
Q ss_pred ccEEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcc--cCCCCceeecCCCC-----
Q 021362 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINK--IWPQKASSFDSQVK----- 147 (313)
Q Consensus 75 m~~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~--~~p~~G~i~~~g~~----- 147 (313)
+++|+++||++.|+...+...++++|||+|++||.++|+|.||||||-..+.|+++++. ...-+|+|.++|.+
T Consensus 4 ~~lL~v~nLsV~f~~~~~~~~aVk~isf~i~~GEtlAlVGESGSGKSvTa~sim~LLp~~~~~~~sg~i~f~G~dll~~s 83 (534)
T COG4172 4 MPLLSIRNLSVAFHQEGGTVEAVKGISFDIEAGETLALVGESGSGKSVTALSILGLLPSPAAAHPSGSILFDGEDLLAAS 83 (534)
T ss_pred CcceeeeccEEEEecCCcceEeeccceeeecCCCEEEEEecCCCCccHHHHHHHHhcCCCcccCccceeEEcChhhhcCC
Confidence 56899999999998655556699999999999999999999999999999999999952 11237899999977
Q ss_pred -------CCCeEEEEecCCCCCCcccCCcccChHHHHHh-cCCCCCccHHHHHHHHHHhhcC-----CCccCCCCCCcCC
Q 021362 148 -------PPDVATVLPMDGFHLYLSQLDAMEDPKEAHAR-RGAPWTFNPLLLLNCLKNLRNQ-----GSVYAPSFDHGVG 214 (313)
Q Consensus 148 -------~~~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~-~~~~~~~~~~~~~~~l~~l~~~-----~~~~~~~LSgG~k 214 (313)
+..+|+++||++....++-.|+...+....+. +|...+..++++.++|+.+|.. .+.++.+||||||
T Consensus 84 e~~lr~iRG~~I~MIFQEPMtSLNPl~tIg~Qi~E~l~~Hrg~~~~~Ar~r~lelL~~VgI~~p~~rl~~yPHeLSGGqR 163 (534)
T COG4172 84 ERQLRGVRGNKIGMIFQEPMTSLNPLHTIGKQLAEVLRLHRGLSRAAARARALELLELVGIPEPEKRLDAYPHELSGGQR 163 (534)
T ss_pred HHHHhhhcccceEEEecccccccCcHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCchhhhhhhCCcccCcchh
Confidence 23469999999987777777888877776654 5677777888999999999932 3557779999999
Q ss_pred CcchhhhhhccCceEEEEcCCccccCh----hhHHHHHhhccc----eEEEEcChHHHHH---HHh----hcccccCCch
Q 021362 215 DPVEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFDE----KWFIEVDLDTAMQ---RVL----KRHISTGKPP 279 (313)
Q Consensus 215 qRv~ia~al~~~ar~Li~d~~~lllDE----~~~~~l~~l~~~----~i~vtHd~~~~~~---rv~----griv~~G~~~ 279 (313)
|||.||+|++..+++||.|+|+.-||- ++++.|+++..+ .+|||||+..+.+ ||. |++++.|..+
T Consensus 164 QRVMIAMALan~P~lLIADEPTTALDVtvQaQIL~Ll~~Lq~~~gMa~lfITHDL~iVr~~ADrV~VM~~G~ivE~~~t~ 243 (534)
T COG4172 164 QRVMIAMALANEPDLLIADEPTTALDVTVQAQILDLLKELQAELGMAILFITHDLGIVRKFADRVYVMQHGEIVETGTTE 243 (534)
T ss_pred hHHHHHHHHcCCCCeEeecCCcchhhhhhHHHHHHHHHHHHHHhCcEEEEEeccHHHHHHhhhhEEEEeccEEeecCcHH
Confidence 999999999999999999999999999 555555555443 3699999999988 666 9999999998
Q ss_pred HHHHH
Q 021362 280 DVAKW 284 (313)
Q Consensus 280 ev~~~ 284 (313)
++...
T Consensus 244 ~lF~~ 248 (534)
T COG4172 244 TLFAA 248 (534)
T ss_pred HHhhC
Confidence 88653
|
|
| >TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D | Back alignment and domain information |
|---|
Probab=99.98 E-value=5.5e-33 Score=248.40 Aligned_cols=180 Identities=17% Similarity=0.180 Sum_probs=142.0
Q ss_pred ccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCCC---CeEEEEecCCCCCCcccCCcccCh
Q 021362 97 TSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPP---DVATVLPMDGFHLYLSQLDAMEDP 173 (313)
Q Consensus 97 L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~~---~~i~~v~qd~~~~~~~~ltv~e~~ 173 (313)
|+++||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|.+.. ...+|++|++..+. .+|+.||+
T Consensus 1 l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---p~~G~i~~~g~~~~~~~~~~~~v~q~~~l~~--~~tv~e~l 75 (230)
T TIGR01184 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQ---PTSGGVILEGKQITEPGPDRMVVFQNYSLLP--WLTVRENI 75 (230)
T ss_pred CCceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCceEEECCEECCCCChhheEEecCcccCC--CCCHHHHH
Confidence 579999999999999999999999999999999999 99999999996542 23589999965443 47999999
Q ss_pred HHHHHh--cCCCCCccHHHHHHHHHHhhcC--CCccCCCCCCcCCCcchhhhhhccCceEEEEcCCccccCh----hhHH
Q 021362 174 KEAHAR--RGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDG----GVWK 245 (313)
Q Consensus 174 ~~~~~~--~~~~~~~~~~~~~~~l~~l~~~--~~~~~~~LSgG~kqRv~ia~al~~~ar~Li~d~~~lllDE----~~~~ 245 (313)
.+.... .+.......+++.++++.++.. .+.++.+||||||||++||++++.++++|++|+|+..||. .+++
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~ 155 (230)
T TIGR01184 76 ALAVDRVLPDLSKSERRAIVEEHIALVGLTEAADKRPGQLSGGMKQRVAIARALSIRPKVLLLDEPFGALDALTRGNLQE 155 (230)
T ss_pred HHHHHhcccCCCHHHHHHHHHHHHHHcCCHHHHcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCCCHHHHHHHHH
Confidence 876421 1222222344567888888743 4567779999999999999999999999999999999999 5555
Q ss_pred HHHhhccc----eEEEEcChHHHHH---HHh----hcccccCCchHH
Q 021362 246 DVSSMFDE----KWFIEVDLDTAMQ---RVL----KRHISTGKPPDV 281 (313)
Q Consensus 246 ~l~~l~~~----~i~vtHd~~~~~~---rv~----griv~~G~~~ev 281 (313)
.|.++.++ .+++|||++++.. |++ |++++.|...++
T Consensus 156 ~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~ 202 (230)
T TIGR01184 156 ELMQIWEEHRVTVLMVTHDVDEALLLSDRVVMLTNGPAANIGQILEV 202 (230)
T ss_pred HHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEeCCcEecccCceec
Confidence 56555432 4799999998876 554 888888765544
|
This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase. |
| >cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters | Back alignment and domain information |
|---|
Probab=99.98 E-value=6.3e-33 Score=246.02 Aligned_cols=173 Identities=12% Similarity=0.070 Sum_probs=135.8
Q ss_pred EEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCC--------C
Q 021362 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP--------P 149 (313)
Q Consensus 78 l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~--------~ 149 (313)
|+++|+++.|++.. ..+|+|+||+|++|++++|+||||||||||+++|+|+.+ |++|+|.++|.+. .
T Consensus 3 l~~~~l~~~~~~~~--~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~---~~~G~i~~~g~~~~~~~~~~~~ 77 (220)
T cd03245 3 IEFRNVSFSYPNQE--IPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYK---PTSGSVLLDGTDIRQLDPADLR 77 (220)
T ss_pred EEEEEEEEEcCCCC--cccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcC---CCCCeEEECCEEhHHCCHHHHH
Confidence 78999999997521 128999999999999999999999999999999999999 9999999999653 2
Q ss_pred CeEEEEecCCCCCCcccCCcccChHHHHHhcCCCCCccHHHHHHHHHHhhcC--CCc-----------cCCCCCCcCCCc
Q 021362 150 DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSV-----------YAPSFDHGVGDP 216 (313)
Q Consensus 150 ~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~-----------~~~~LSgG~kqR 216 (313)
+.++|++|++..+ . .|+.||+.+... ......+.++++.++.. .+. .+.+|||||+||
T Consensus 78 ~~i~~~~q~~~~~-~--~tv~e~l~~~~~------~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~LSgG~~qr 148 (220)
T cd03245 78 RNIGYVPQDVTLF-Y--GTLRDNITLGAP------LADDERILRAAELAGVTDFVNKHPNGLDLQIGERGRGLSGGQRQA 148 (220)
T ss_pred hhEEEeCCCCccc-c--chHHHHhhcCCC------CCCHHHHHHHHHHcCcHHHHHhccccccceecCCCccCCHHHHHH
Confidence 3589999996533 2 589998865321 11234455566655421 111 345999999999
Q ss_pred chhhhhhccCceEEEEcCCccccCh----hhHHHHHhhccc--eEEEEcChHHH
Q 021362 217 VEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFDE--KWFIEVDLDTA 264 (313)
Q Consensus 217 v~ia~al~~~ar~Li~d~~~lllDE----~~~~~l~~l~~~--~i~vtHd~~~~ 264 (313)
++||++++.++++|++|+|+..||. .+++.|+++..+ .|++|||+++.
T Consensus 149 l~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~ 202 (220)
T cd03245 149 VALARALLNDPPILLLDEPTSAMDMNSEERLKERLRQLLGDKTLIIITHRPSLL 202 (220)
T ss_pred HHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHH
Confidence 9999999999999999999999999 455666665442 46999999976
|
Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane. |
| >cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Probab=99.98 E-value=9.1e-33 Score=246.43 Aligned_cols=190 Identities=17% Similarity=0.216 Sum_probs=145.9
Q ss_pred EEEccceEEccc-cccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCC--------
Q 021362 78 VEARCMDEVYDA-LAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP-------- 148 (313)
Q Consensus 78 l~~~~l~~~y~~-~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~-------- 148 (313)
|+++|+++.|++ .. +|+|+||++++|++++|+||||||||||+++|+|+++ |++|+|.++|.+.
T Consensus 3 l~~~~l~~~~~~~~~----~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~~~~~~~~~~ 75 (229)
T cd03254 3 IEFENVNFSYDEKKP----VLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYD---PQKGQILIDGIDIRDISRKSL 75 (229)
T ss_pred EEEEEEEEecCCCCc----cccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcC---CCCCEEEECCEeHHHcCHHHH
Confidence 789999999974 34 9999999999999999999999999999999999999 9999999998653
Q ss_pred CCeEEEEecCCCCCCcccCCcccChHHHHHhcCCCCCccHHHHHHHHHHhh-------------cCCCccCCCCCCcCCC
Q 021362 149 PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLR-------------NQGSVYAPSFDHGVGD 215 (313)
Q Consensus 149 ~~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~~~~~~~~~~~~l~~l~-------------~~~~~~~~~LSgG~kq 215 (313)
...++|++|++.. +. .|+.+|+.+.... .....+.+.++.++ ...+..+.+||+||+|
T Consensus 76 ~~~i~~~~q~~~~-~~--~tv~~~~~~~~~~------~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~~ 146 (229)
T cd03254 76 RSMIGVVLQDTFL-FS--GTIMENIRLGRPN------ATDEEVIEAAKEAGAHDFIMKLPNGYDTVLGENGGNLSQGERQ 146 (229)
T ss_pred hhhEEEecCCchh-hh--hHHHHHHhccCCC------CCHHHHHHHHHHhChHHHHHhCcccccCHhhcCCCcCCHHHHH
Confidence 2458999999643 32 4888888654211 11223333333222 1123456799999999
Q ss_pred cchhhhhhccCceEEEEcCCccccCh----hhHHHHHhhcc--ceEEEEcChHHHHH--HHh----hcccccCCchHHHH
Q 021362 216 PVEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFD--EKWFIEVDLDTAMQ--RVL----KRHISTGKPPDVAK 283 (313)
Q Consensus 216 Rv~ia~al~~~ar~Li~d~~~lllDE----~~~~~l~~l~~--~~i~vtHd~~~~~~--rv~----griv~~G~~~ev~~ 283 (313)
|++||++++.++++|++|+|+..||. .+++.|.++.+ ..+++|||++++.. +++ |+++..|+.+++..
T Consensus 147 rv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~i~~l~~g~~~~~~~~~~~~~ 226 (229)
T cd03254 147 LLAIARAMLRDPKILILDEATSNIDTETEKLIQEALEKLMKGRTSIIIAHRLSTIKNADKILVLDDGKIIEEGTHDELLA 226 (229)
T ss_pred HHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHhhCCEEEEEeCCeEEEeCCHHHHHh
Confidence 99999999999999999999999998 45555555542 24699999999865 444 78887777666543
|
In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export | Back alignment and domain information |
|---|
Probab=99.98 E-value=4e-33 Score=248.43 Aligned_cols=176 Identities=13% Similarity=0.078 Sum_probs=139.9
Q ss_pred EEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCCCCeEEEEec
Q 021362 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPM 157 (313)
Q Consensus 78 l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~~~~i~~v~q 157 (313)
+.++++++.|++.. +|+|+||+|++|++++|+||||||||||+++|+|+++ |++|+|+++|.+.. +. +
T Consensus 23 l~~~~~~~~~~~~~----il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~---p~~G~i~~~g~~~~----~~-~ 90 (224)
T cd03220 23 LGILGRKGEVGEFW----ALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYP---PDSGTVTVRGRVSS----LL-G 90 (224)
T ss_pred hhhhhhhhhcCCeE----EEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCceEEEECCEEch----hh-c
Confidence 78899999999877 9999999999999999999999999999999999999 99999999986532 11 1
Q ss_pred CCCCCCcccCCcccChHHHHHhcCCCCCccHHHHHHHHHHhhc--CCCccCCCCCCcCCCcchhhhhhccCceEEEEcCC
Q 021362 158 DGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGN 235 (313)
Q Consensus 158 d~~~~~~~~ltv~e~~~~~~~~~~~~~~~~~~~~~~~l~~l~~--~~~~~~~~LSgG~kqRv~ia~al~~~ar~Li~d~~ 235 (313)
....+. +.+|+.||+.+....++.......+++.++++.++. ..+..+.+||||||||++||++++.++++|++|+|
T Consensus 91 ~~~~~~-~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEP 169 (224)
T cd03220 91 LGGGFN-PELTGRENIYLNGRLLGLSRKEIDEKIDEIIEFSELGDFIDLPVKTYSSGMKARLAFAIATALEPDILLIDEV 169 (224)
T ss_pred ccccCC-CCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 111222 248999999887554433222233456677777763 34567789999999999999999999999999999
Q ss_pred ccccCh----hhHHHHHhhccc---eEEEEcChHHHHH
Q 021362 236 YLFLDG----GVWKDVSSMFDE---KWFIEVDLDTAMQ 266 (313)
Q Consensus 236 ~lllDE----~~~~~l~~l~~~---~i~vtHd~~~~~~ 266 (313)
+..||. .+++.|.++..+ .|++|||++++..
T Consensus 170 ~~gLD~~~~~~~~~~l~~~~~~~~tiii~sH~~~~~~~ 207 (224)
T cd03220 170 LAVGDAAFQEKCQRRLRELLKQGKTVILVSHDPSSIKR 207 (224)
T ss_pred cccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHH
Confidence 999999 456666665433 4799999998875
|
Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2. |
| >COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.2e-32 Score=244.60 Aligned_cols=186 Identities=14% Similarity=0.115 Sum_probs=156.3
Q ss_pred cceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCC------------CC
Q 021362 82 CMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK------------PP 149 (313)
Q Consensus 82 ~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~------------~~ 149 (313)
|+.+.+|+.. -+++|+.+...+++|-|+||||||||+|+|+|+.+ |+.|.|.++|.- -.
T Consensus 5 ~~~~~lG~~~------l~a~~~~p~~GvTAlFG~SGsGKTslin~IaGL~r---PdeG~I~lngr~L~Ds~k~i~lp~~~ 75 (352)
T COG4148 5 NFRQRLGNFA------LDANFTLPARGITALFGPSGSGKTSLINMIAGLTR---PDEGRIELNGRVLVDAEKGIFLPPEK 75 (352)
T ss_pred ehhhhcCceE------EEEeccCCCCceEEEecCCCCChhhHHHHHhccCC---ccccEEEECCEEeecccCCcccChhh
Confidence 4566666643 36899998878999999999999999999999999 999999999953 23
Q ss_pred CeEEEEecCCCCCCcccCCcccChHHHHHhcCCCCCccHHHHHHHHHHhh--cCCCccCCCCCCcCCCcchhhhhhccCc
Q 021362 150 DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLR--NQGSVYAPSFDHGVGDPVEDDILVGLQH 227 (313)
Q Consensus 150 ~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~~~~~~~~~~~~l~~l~--~~~~~~~~~LSgG~kqRv~ia~al~~~a 227 (313)
+++||||||...|+ ++||+.|+.|+.... ....+.++.+.+| ...++++..|||||||||+|++|+...+
T Consensus 76 RriGYVFQDARLFp--H~tVrgNL~YG~~~~------~~~~fd~iv~lLGI~hLL~R~P~~LSGGEkQRVAIGRALLt~P 147 (352)
T COG4148 76 RRIGYVFQDARLFP--HYTVRGNLRYGMWKS------MRAQFDQLVALLGIEHLLDRYPGTLSGGEKQRVAIGRALLTAP 147 (352)
T ss_pred heeeeEeecccccc--ceEEecchhhhhccc------chHhHHHHHHHhCcHHHHhhCCCccCcchhhHHHHHHHHhcCC
Confidence 56999999966554 599999998875432 4456777778887 4567888899999999999999999999
Q ss_pred eEEEEcCCccccCh----hhHHHHHhhccc----eEEEEcChHHHHH---HHh----hcccccCCchHHHHH
Q 021362 228 KVVIVDGNYLFLDG----GVWKDVSSMFDE----KWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAKW 284 (313)
Q Consensus 228 r~Li~d~~~lllDE----~~~~~l~~l~~~----~i~vtHd~~~~~~---rv~----griv~~G~~~ev~~~ 284 (313)
++|++|+|+.-||+ +++..|+.+.++ +++|||.++++.+ +++ |++.+.|+.+++...
T Consensus 148 ~LLLmDEPLaSLD~~RK~EilpylERL~~e~~IPIlYVSHS~~Ev~RLAd~vV~le~GkV~A~g~~e~v~~~ 219 (352)
T COG4148 148 ELLLMDEPLASLDLPRKREILPYLERLRDEINIPILYVSHSLDEVLRLADRVVVLENGKVKASGPLEEVWGS 219 (352)
T ss_pred CeeeecCchhhcccchhhHHHHHHHHHHHhcCCCEEEEecCHHHHHhhhheEEEecCCeEEecCcHHHHhcC
Confidence 99999999999999 788888888776 3699999999998 666 999999999998554
|
|
| >TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.4e-32 Score=271.26 Aligned_cols=194 Identities=15% Similarity=0.028 Sum_probs=151.6
Q ss_pred EEEEccceEEcc-ccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCCCCeEEEE
Q 021362 77 VVEARCMDEVYD-ALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVL 155 (313)
Q Consensus 77 ~l~~~~l~~~y~-~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~~~~i~~v 155 (313)
||+++||++.|+ +.. +|+|+||+|++|++++|+||||||||||+++|+|+++ |++|+|.+++ ...++|+
T Consensus 4 ~i~~~nls~~~~~~~~----il~~is~~i~~Ge~~~liG~NGsGKSTLl~~i~G~~~---p~~G~i~~~~---~~~i~~v 73 (552)
T TIGR03719 4 IYTMNRVSKVVPPKKE----ILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDK---EFNGEARPAP---GIKVGYL 73 (552)
T ss_pred EEEEeeEEEecCCCCe----eecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCceEEecC---CCEEEEE
Confidence 799999999997 555 9999999999999999999999999999999999999 9999999875 2469999
Q ss_pred ecCCCCCCcccCCcccChHHHHHh--------------cCCCCCc----------------------cHHHHHHHHHHhh
Q 021362 156 PMDGFHLYLSQLDAMEDPKEAHAR--------------RGAPWTF----------------------NPLLLLNCLKNLR 199 (313)
Q Consensus 156 ~qd~~~~~~~~ltv~e~~~~~~~~--------------~~~~~~~----------------------~~~~~~~~l~~l~ 199 (313)
+|++..+. .+|+.||+.++... .+.+... ...++.++++.++
T Consensus 74 ~Q~~~~~~--~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 151 (552)
T TIGR03719 74 PQEPQLDP--TKTVRENVEEGVAEIKDALDRFNEISAKFAEPDADMDALLAEQAELQEIIDAADAWDLDRKLEIAMDALR 151 (552)
T ss_pred eccCCCCC--CCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCcchhHHHHHHHHhhCC
Confidence 99965433 48999999874321 0111110 0123455666666
Q ss_pred c-CCCccCCCCCCcCCCcchhhhhhccCceEEEEcCCccccChhhH----HHHHhhccceEEEEcChHHHHH---HHh--
Q 021362 200 N-QGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVW----KDVSSMFDEKWFIEVDLDTAMQ---RVL-- 269 (313)
Q Consensus 200 ~-~~~~~~~~LSgG~kqRv~ia~al~~~ar~Li~d~~~lllDE~~~----~~l~~l~~~~i~vtHd~~~~~~---rv~-- 269 (313)
. ..+.++.+||||||||++||++++.++++|++|+|+..||.... +.|.++....|+||||++.+.. +++
T Consensus 152 l~~~~~~~~~LSgGqkqrv~la~al~~~p~lLLLDEPt~~LD~~~~~~l~~~L~~~~~tvIiisHd~~~~~~~~d~v~~l 231 (552)
T TIGR03719 152 CPPWDADVTKLSGGERRRVALCRLLLSKPDMLLLDEPTNHLDAESVAWLEQHLQEYPGTVVAVTHDRYFLDNVAGWILEL 231 (552)
T ss_pred CCcccCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCChHHHHHHHHHHHhCCCeEEEEeCCHHHHHhhcCeEEEE
Confidence 4 23567779999999999999999999999999999999999444 4444443345799999999886 555
Q ss_pred --hccc-ccCCchHHH
Q 021362 270 --KRHI-STGKPPDVA 282 (313)
Q Consensus 270 --griv-~~G~~~ev~ 282 (313)
|+++ ..|...++.
T Consensus 232 ~~g~i~~~~g~~~~~~ 247 (552)
T TIGR03719 232 DRGRGIPWEGNYSSWL 247 (552)
T ss_pred ECCEEEEecCCHHHHH
Confidence 7765 568777643
|
Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. |
| >PRK13541 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.9e-32 Score=238.87 Aligned_cols=175 Identities=11% Similarity=0.031 Sum_probs=139.5
Q ss_pred EEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCCC----CeE
Q 021362 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPP----DVA 152 (313)
Q Consensus 77 ~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~~----~~i 152 (313)
||+++|+++.|++.. +++ +||+|++||+++|+|+||||||||+++|+|+++ |++|+|.++|.+.. ..+
T Consensus 1 ~l~~~~l~~~~~~~~----l~~-vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~i~~~~~~~~ 72 (195)
T PRK13541 1 MLSLHQLQFNIEQKN----LFD-LSITFLPSAITYIKGANGCGKSSLLRMIAGIMQ---PSSGNIYYKNCNINNIAKPYC 72 (195)
T ss_pred CeEEEEeeEEECCcE----EEE-EEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCC---CCCcEEEECCcccChhhhhhE
Confidence 488999999997643 555 999999999999999999999999999999999 99999999997642 347
Q ss_pred EEEecCCCCCCcccCCcccChHHHHHhcCCCCCccHHHHHHHHHHhhc--CCCccCCCCCCcCCCcchhhhhhccCceEE
Q 021362 153 TVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDILVGLQHKVV 230 (313)
Q Consensus 153 ~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~~~~~~~~~~~~l~~l~~--~~~~~~~~LSgG~kqRv~ia~al~~~ar~L 230 (313)
+|++|+...++ .+|+.+|+.+....++ ..+.+.++++.++. ..++.+.+||+||+||+++|++++.+++++
T Consensus 73 ~~~~~~~~~~~--~~tv~~~l~~~~~~~~-----~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rl~la~al~~~p~~l 145 (195)
T PRK13541 73 TYIGHNLGLKL--EMTVFENLKFWSEIYN-----SAETLYAAIHYFKLHDLLDEKCYSLSSGMQKIVAIARLIACQSDLW 145 (195)
T ss_pred EeccCCcCCCc--cCCHHHHHHHHHHhcc-----cHHHHHHHHHHcCCHhhhccChhhCCHHHHHHHHHHHHHhcCCCEE
Confidence 89998854333 4899999987643322 23456777777763 346677799999999999999999999999
Q ss_pred EEcCCccccChh----hHHHHHhhccc---eEEEEcChHHHHH
Q 021362 231 IVDGNYLFLDGG----VWKDVSSMFDE---KWFIEVDLDTAMQ 266 (313)
Q Consensus 231 i~d~~~lllDE~----~~~~l~~l~~~---~i~vtHd~~~~~~ 266 (313)
++|+|+..||.. +++.|++..+. .+++|||++.+..
T Consensus 146 llDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~i~~ 188 (195)
T PRK13541 146 LLDEVETNLSKENRDLLNNLIVMKANSGGIVLLSSHLESSIKS 188 (195)
T ss_pred EEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCccccch
Confidence 999999999993 44444333222 4699999987654
|
|
| >KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.2e-32 Score=271.44 Aligned_cols=195 Identities=16% Similarity=0.174 Sum_probs=156.2
Q ss_pred EEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCCC-------
Q 021362 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPP------- 149 (313)
Q Consensus 77 ~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~~------- 149 (313)
.|+++||++.|..++ ...+|+|+||+|++||+++|+||||+||||++++|..++. |++|+|.+||++++
T Consensus 465 ~IeF~~VsFaYP~Rp-~~~Vlk~lsfti~pGe~vALVGPSGsGKSTiasLL~rfY~---PtsG~IllDG~~i~~~~~~~l 540 (716)
T KOG0058|consen 465 VIEFEDVSFAYPTRP-DVPVLKNLSFTIRPGEVVALVGPSGSGKSTIASLLLRFYD---PTSGRILLDGVPISDINHKYL 540 (716)
T ss_pred eEEEEEeeeecCCCC-CchhhcCceeeeCCCCEEEEECCCCCCHHHHHHHHHHhcC---CCCCeEEECCeehhhcCHHHH
Confidence 699999999998875 5569999999999999999999999999999999999999 99999999998843
Q ss_pred -CeEEEEecCCCCCCcccCCcccChHHHHHhcCCCCCccHHHHHHHHH---------HhhcCCCc----cCCCCCCcCCC
Q 021362 150 -DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLK---------NLRNQGSV----YAPSFDHGVGD 215 (313)
Q Consensus 150 -~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~~~~~~~~~~~~l~---------~l~~~~~~----~~~~LSgG~kq 215 (313)
+.||+|.|+|..+. -|++|||.|+.. ....+.+.++.+ .+-++-+. +-.+|||||||
T Consensus 541 r~~Ig~V~QEPvLFs---~sI~eNI~YG~~------~~t~e~i~~AAk~ANah~FI~~~p~gY~T~VGEkG~qLSGGQKQ 611 (716)
T KOG0058|consen 541 RRKIGLVGQEPVLFS---GSIRENIAYGLD------NATDEEIEAAAKMANAHEFITNFPDGYNTVVGEKGSQLSGGQKQ 611 (716)
T ss_pred HHHeeeeeccceeec---ccHHHHHhcCCC------CCCHHHHHHHHHHhChHHHHHhCccccccccCCccccccchHHH
Confidence 46999999986554 599999987643 222333333322 22233333 33499999999
Q ss_pred cchhhhhhccCceEEEEcCCccccChh----hHHHHHhhccc--eEEEEcChHHHHH--HHh----hcccccCCchHHHH
Q 021362 216 PVEDDILVGLQHKVVIVDGNYLFLDGG----VWKDVSSMFDE--KWFIEVDLDTAMQ--RVL----KRHISTGKPPDVAK 283 (313)
Q Consensus 216 Rv~ia~al~~~ar~Li~d~~~lllDE~----~~~~l~~l~~~--~i~vtHd~~~~~~--rv~----griv~~G~~~ev~~ 283 (313)
|+||||||..++++||+|+.+.-||-+ +.+.|.++.++ +++|.|-+..+.. +|+ |++++.|+-+|+..
T Consensus 612 RIAIARALlr~P~VLILDEATSALDaeSE~lVq~aL~~~~~~rTVlvIAHRLSTV~~Ad~Ivvi~~G~V~E~G~h~eLl~ 691 (716)
T KOG0058|consen 612 RIAIARALLRNPRVLILDEATSALDAESEYLVQEALDRLMQGRTVLVIAHRLSTVRHADQIVVIDKGRVVEMGTHDELLS 691 (716)
T ss_pred HHHHHHHHhcCCCEEEEechhhhcchhhHHHHHHHHHHhhcCCeEEEEehhhhHhhhccEEEEEcCCeEEecccHHHHhh
Confidence 999999999999999999999999973 44444444333 5799999999998 554 99999999888876
Q ss_pred H
Q 021362 284 W 284 (313)
Q Consensus 284 ~ 284 (313)
.
T Consensus 692 ~ 692 (716)
T KOG0058|consen 692 K 692 (716)
T ss_pred C
Confidence 5
|
|
| >cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.6e-32 Score=243.24 Aligned_cols=198 Identities=15% Similarity=0.103 Sum_probs=147.9
Q ss_pred EEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCC-----CCe
Q 021362 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP-----PDV 151 (313)
Q Consensus 77 ~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~-----~~~ 151 (313)
+++++|+++.|.+......+|+|+||+|++||+++|+||||||||||+++|+|+++..-|++|+|.++|.+. .+.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~G~~~~~~~~~G~i~~~g~~~~~~~~~~~ 82 (226)
T cd03234 3 VLPWWDVGLKAKNWNKYARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRKPDQFQKC 82 (226)
T ss_pred cceeecceeeeecCccccccccCceEEEcCCeEEEEECCCCCCHHHHHHHHhCccCCCCCCceEEEECCEECChHHhccc
Confidence 578999999996531123399999999999999999999999999999999999841114899999999653 356
Q ss_pred EEEEecCCCCCCcccCCcccChHHHHHhcCCC---CCccHHHHHH-HHHHhhc--CCCccCCCCCCcCCCcchhhhhhcc
Q 021362 152 ATVLPMDGFHLYLSQLDAMEDPKEAHARRGAP---WTFNPLLLLN-CLKNLRN--QGSVYAPSFDHGVGDPVEDDILVGL 225 (313)
Q Consensus 152 i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~---~~~~~~~~~~-~l~~l~~--~~~~~~~~LSgG~kqRv~ia~al~~ 225 (313)
++|++|++..++ .+|+.||+.+........ .......+.+ .++.++. ..+..+.+||+||+||++||++++.
T Consensus 83 i~~~~q~~~~~~--~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~ 160 (226)
T cd03234 83 VAYVRQDDILLP--GLTVRETLTYTAILRLPRKSSDAIRKKRVEDVLLRDLALTRIGGNLVKGISGGERRRVSIAVQLLW 160 (226)
T ss_pred EEEeCCCCccCc--CCcHHHHHHHHHHhhcccccchHHHHHHHHHHHHHhhcchhhhcccccCcCHHHHHHHHHHHHHHh
Confidence 999999965443 489999998865433211 1111223344 6777763 2456778999999999999999999
Q ss_pred CceEEEEcCCccccCh----hhHHHHHhhccc---eEEEEcCh-HHHHH---HHh----hcccccC
Q 021362 226 QHKVVIVDGNYLFLDG----GVWKDVSSMFDE---KWFIEVDL-DTAMQ---RVL----KRHISTG 276 (313)
Q Consensus 226 ~ar~Li~d~~~lllDE----~~~~~l~~l~~~---~i~vtHd~-~~~~~---rv~----griv~~G 276 (313)
++++|++|+|+..||. .+++.|.++.+. .+++||++ +++.. +++ |++++.|
T Consensus 161 ~p~illlDEP~~gLD~~~~~~~~~~l~~~~~~~~tiii~sh~~~~~~~~~~d~i~~l~~G~i~~~g 226 (226)
T cd03234 161 DPKVLILDEPTSGLDSFTALNLVSTLSQLARRNRIVILTIHQPRSDLFRLFDRILLLSSGEIVYSG 226 (226)
T ss_pred CCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHhCCEEEEEeCCEEEecC
Confidence 9999999999999999 555556555432 46999998 46655 443 6665543
|
The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in |
| >PRK09700 D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.1e-32 Score=273.24 Aligned_cols=193 Identities=13% Similarity=0.073 Sum_probs=151.7
Q ss_pred cEEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCC-------
Q 021362 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP------- 148 (313)
Q Consensus 76 ~~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~------- 148 (313)
++|+++|+++.|+ . +|+|+||+|++|++++|+||||||||||+|+|+|+++ |++|+|.++|.+.
T Consensus 264 ~~l~~~~l~~~~~--~----~l~~isl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~---p~~G~I~~~g~~~~~~~~~~ 334 (510)
T PRK09700 264 TVFEVRNVTSRDR--K----KVRDISFSVCRGEILGFAGLVGSGRTELMNCLFGVDK---RAGGEIRLNGKDISPRSPLD 334 (510)
T ss_pred cEEEEeCccccCC--C----cccceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCc---CCCCeEEECCEECCCCCHHH
Confidence 4799999999763 3 8999999999999999999999999999999999999 9999999998653
Q ss_pred --CCeEEEEecCC--CCCCcccCCcccChHHHHHhc--------CC-CCCccHHHHHHHHHHhhcC---CCccCCCCCCc
Q 021362 149 --PDVATVLPMDG--FHLYLSQLDAMEDPKEAHARR--------GA-PWTFNPLLLLNCLKNLRNQ---GSVYAPSFDHG 212 (313)
Q Consensus 149 --~~~i~~v~qd~--~~~~~~~ltv~e~~~~~~~~~--------~~-~~~~~~~~~~~~l~~l~~~---~~~~~~~LSgG 212 (313)
.+.++|++|+. ..++ +.+|+.+|+.+....+ +. ......+++.++++.++.. .++++.+||||
T Consensus 335 ~~~~~i~~v~q~~~~~~~~-~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG 413 (510)
T PRK09700 335 AVKKGMAYITESRRDNGFF-PNFSIAQNMAISRSLKDGGYKGAMGLFHEVDEQRTAENQRELLALKCHSVNQNITELSGG 413 (510)
T ss_pred HHHCCcEEccCccccCCCc-CCCcHHHHhccccccccccccccccccChHHHHHHHHHHHHhcCCCCCCccCccccCChH
Confidence 13589999984 2233 3589999987653211 11 1112234567888888853 46677899999
Q ss_pred CCCcchhhhhhccCceEEEEcCCccccCh----hhHHHHHhhccc---eEEEEcChHHHHH---HHh----hcccccCCc
Q 021362 213 VGDPVEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFDE---KWFIEVDLDTAMQ---RVL----KRHISTGKP 278 (313)
Q Consensus 213 ~kqRv~ia~al~~~ar~Li~d~~~lllDE----~~~~~l~~l~~~---~i~vtHd~~~~~~---rv~----griv~~G~~ 278 (313)
|||||+||++++.++++|++|+|+..||. .+++.|+++.++ .|++|||++++.. |++ |+++..++.
T Consensus 414 q~qrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~~~~ 493 (510)
T PRK09700 414 NQQKVLISKWLCCCPEVIIFDEPTRGIDVGAKAEIYKVMRQLADDGKVILMVSSELPEIITVCDRIAVFCEGRLTQILTN 493 (510)
T ss_pred HHHHHHHHHHHhcCCCEEEECCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHhhCCEEEEEECCEEEEEecC
Confidence 99999999999999999999999999999 445555554332 4799999999877 554 888776654
|
|
| >COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.5e-32 Score=232.76 Aligned_cols=199 Identities=16% Similarity=0.137 Sum_probs=158.8
Q ss_pred cEEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCC-CCCCC----
Q 021362 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQ-VKPPD---- 150 (313)
Q Consensus 76 ~~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g-~~~~~---- 150 (313)
++++++|++++|++.. +|+++||++.+||.-+|+|||||||||++..|+|.-+ |+.|+++++| .+..+
T Consensus 4 ~iL~~~~vsVsF~GF~----Aln~ls~~v~~Gelr~lIGpNGAGKTT~mD~ItGKtr---p~~G~v~f~g~~dl~~~~e~ 76 (249)
T COG4674 4 IILYLDGVSVSFGGFK----ALNDLSFSVDPGELRVLIGPNGAGKTTLMDVITGKTR---PQEGEVLFDGDTDLTKLPEH 76 (249)
T ss_pred ceEEEeceEEEEccee----eeeeeEEEecCCeEEEEECCCCCCceeeeeeecccCC---CCcceEEEcCchhhccCCHH
Confidence 4799999999999998 9999999999999999999999999999999999999 9999999999 55322
Q ss_pred -----eEEEEecCCCCCCcccCCcccChHHHHHhcC--------CCCCccHHHHHHHHHHhhcC--CCccCCCCCCcCCC
Q 021362 151 -----VATVLPMDGFHLYLSQLDAMEDPKEAHARRG--------APWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGD 215 (313)
Q Consensus 151 -----~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~--------~~~~~~~~~~~~~l~~l~~~--~~~~~~~LSgG~kq 215 (313)
-||--||.+..+. .+||+||+.+...... ........++.++|+.+++. .+.....||+||||
T Consensus 77 ~IAr~GIGRKFQ~PtVfe--~ltV~eNLelA~~~~k~v~a~L~~r~~~~e~~ride~La~igL~~~~~~~A~~LSHGqKQ 154 (249)
T COG4674 77 RIARAGIGRKFQKPTVFE--NLTVRENLELALNRDKSVFASLFARLRAEERRRIDELLATIGLGDERDRLAALLSHGQKQ 154 (249)
T ss_pred HHHHhccCccccCCeehh--hccHHHHHHHHhcCCcchHHHhhhhcChhHHHHHHHHHHHcccchhhhhhhhhhccchhh
Confidence 2677889876555 4999999998754321 12234456889999988854 45566699999999
Q ss_pred cchhhhhhccCceEEEEcCCccccCh----hhHHHHHhhccc--eEEEEcChHHHHH---HHh----hcccccCCchHHH
Q 021362 216 PVEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFDE--KWFIEVDLDTAMQ---RVL----KRHISTGKPPDVA 282 (313)
Q Consensus 216 Rv~ia~al~~~ar~Li~d~~~lllDE----~~~~~l~~l~~~--~i~vtHd~~~~~~---rv~----griv~~G~~~ev~ 282 (313)
++.|.+.++.+|.+|++|+|+..+-+ ..-+.|+.+... .++|.|||.++.. +|- |.+.+.|+.+++-
T Consensus 155 wLEIGMll~Q~P~lLLlDEPvAGMTd~Et~~taeLl~~la~~hsilVVEHDM~Fvr~~A~~VTVlh~G~VL~EGsld~v~ 234 (249)
T COG4674 155 WLEIGMLLAQDPKLLLLDEPVAGMTDAETEKTAELLKSLAGKHSILVVEHDMGFVREIADKVTVLHEGSVLAEGSLDEVQ 234 (249)
T ss_pred hhhhheeeccCCcEEEecCccCCCcHHHHHHHHHHHHHHhcCceEEEEeccHHHHHHhhheeEEEeccceeecccHHHhh
Confidence 99996666666666666666666655 456666666544 5799999999988 333 9999999998884
Q ss_pred H
Q 021362 283 K 283 (313)
Q Consensus 283 ~ 283 (313)
.
T Consensus 235 ~ 235 (249)
T COG4674 235 N 235 (249)
T ss_pred c
Confidence 3
|
|
| >cd03289 ABCC_CFTR2 The CFTR subfamily domain 2 | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.3e-32 Score=250.41 Aligned_cols=189 Identities=16% Similarity=0.173 Sum_probs=150.5
Q ss_pred EEEccceEEcc--ccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCC-------
Q 021362 78 VEARCMDEVYD--ALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP------- 148 (313)
Q Consensus 78 l~~~~l~~~y~--~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~------- 148 (313)
|+++|+++.|. +.. +|+|+||+|++||+++|+|+||||||||+++|+|++ +++|+|+++|.+.
T Consensus 3 i~~~nls~~~~~~~~~----~l~~isl~I~~Ge~~~IvG~nGsGKSTLl~~L~gl~----~~~G~I~i~g~~i~~~~~~~ 74 (275)
T cd03289 3 MTVKDLTAKYTEGGNA----VLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLL----NTEGDIQIDGVSWNSVPLQK 74 (275)
T ss_pred EEEEEEEEEeCCCCCc----ceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhhhc----CCCcEEEECCEEhhhCCHHH
Confidence 78999999995 334 899999999999999999999999999999999998 5689999999663
Q ss_pred -CCeEEEEecCCCCCCcccCCcccChHHHHHhcCCCCCccHHHHHHHHHHhhcC--CCccCC-----------CCCCcCC
Q 021362 149 -PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAP-----------SFDHGVG 214 (313)
Q Consensus 149 -~~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~~~~-----------~LSgG~k 214 (313)
++.++|++|++..+. .|+++|+... + ....+++.++++.++.. .+..+. .||+||+
T Consensus 75 lr~~i~~v~q~~~lf~---~tv~~nl~~~----~---~~~~~~~~~~l~~~gL~~~~~~~p~~l~~~~~~~g~~LS~G~~ 144 (275)
T cd03289 75 WRKAFGVIPQKVFIFS---GTFRKNLDPY----G---KWSDEEIWKVAEEVGLKSVIEQFPGQLDFVLVDGGCVLSHGHK 144 (275)
T ss_pred HhhhEEEECCCcccch---hhHHHHhhhc----c---CCCHHHHHHHHHHcCCHHHHHhCcccccceecCCCCCCCHHHH
Confidence 246999999976443 4999998532 1 12235566777777632 222232 4999999
Q ss_pred CcchhhhhhccCceEEEEcCCccccCh----hhHHHHHhhccc--eEEEEcChHHHHH--HHh----hcccccCCchHHH
Q 021362 215 DPVEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFDE--KWFIEVDLDTAMQ--RVL----KRHISTGKPPDVA 282 (313)
Q Consensus 215 qRv~ia~al~~~ar~Li~d~~~lllDE----~~~~~l~~l~~~--~i~vtHd~~~~~~--rv~----griv~~G~~~ev~ 282 (313)
||+++|+|++.++++|++|+++..||. .+.+.|+++... .|+|||+++++.. |++ |++++.|+++++.
T Consensus 145 qrl~LaRall~~p~illlDEpts~LD~~~~~~l~~~l~~~~~~~tii~isH~~~~i~~~dri~vl~~G~i~~~g~~~~l~ 224 (275)
T cd03289 145 QLMCLARSVLSKAKILLLDEPSAHLDPITYQVIRKTLKQAFADCTVILSEHRIEAMLECQRFLVIEENKVRQYDSIQKLL 224 (275)
T ss_pred HHHHHHHHHhcCCCEEEEECccccCCHHHHHHHHHHHHHhcCCCEEEEEECCHHHHHhCCEEEEecCCeEeecCCHHHHh
Confidence 999999999999999999999999999 445555554432 4799999998876 655 9999999999986
Q ss_pred HH
Q 021362 283 KW 284 (313)
Q Consensus 283 ~~ 284 (313)
..
T Consensus 225 ~~ 226 (275)
T cd03289 225 NE 226 (275)
T ss_pred hC
Confidence 63
|
The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. |
| >cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1) | Back alignment and domain information |
|---|
Probab=99.97 E-value=5e-32 Score=238.26 Aligned_cols=181 Identities=15% Similarity=0.146 Sum_probs=142.5
Q ss_pred EEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCC--------
Q 021362 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP-------- 148 (313)
Q Consensus 77 ~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~-------- 148 (313)
.|+++|+++.|++.. ..+|+++||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|.+.
T Consensus 6 ~l~~~~l~~~~~~~~--~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~---~~~G~i~~~g~~~~~~~~~~~ 80 (207)
T cd03369 6 EIEVENLSVRYAPDL--PPVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLE---AEEGKIEIDGIDISTIPLEDL 80 (207)
T ss_pred eEEEEEEEEEeCCCC--cccccCceEEECCCCEEEEECCCCCCHHHHHHHHhcccC---CCCCeEEECCEEhHHCCHHHH
Confidence 599999999997521 129999999999999999999999999999999999999 9999999999653
Q ss_pred CCeEEEEecCCCCCCcccCCcccChHHHHHhcCCCCCccHHHHHHHHHHhhcCCCccCCCCCCcCCCcchhhhhhccCce
Q 021362 149 PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHK 228 (313)
Q Consensus 149 ~~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~LSgG~kqRv~ia~al~~~ar 228 (313)
.+.++|++|++.. +. .|+.+|+.+.. ....+.+.+.++ .+.++.+|||||+||++||++++.+++
T Consensus 81 ~~~i~~v~q~~~~-~~--~tv~~~l~~~~-------~~~~~~~~~~l~-----~~~~~~~LS~G~~qrv~laral~~~p~ 145 (207)
T cd03369 81 RSSLTIIPQDPTL-FS--GTIRSNLDPFD-------EYSDEEIYGALR-----VSEGGLNLSQGQRQLLCLARALLKRPR 145 (207)
T ss_pred HhhEEEEecCCcc-cC--ccHHHHhcccC-------CCCHHHHHHHhh-----ccCCCCcCCHHHHHHHHHHHHHhhCCC
Confidence 3469999999643 33 59999985421 112333444444 355677999999999999999999999
Q ss_pred EEEEcCCccccCh----hhHHHHHhhccc--eEEEEcChHHHHH--HHh----hcccccCC
Q 021362 229 VVIVDGNYLFLDG----GVWKDVSSMFDE--KWFIEVDLDTAMQ--RVL----KRHISTGK 277 (313)
Q Consensus 229 ~Li~d~~~lllDE----~~~~~l~~l~~~--~i~vtHd~~~~~~--rv~----griv~~G~ 277 (313)
++++|+|+..||. .+++.|+++... .|++|||++++.. |++ |++++.|+
T Consensus 146 llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~th~~~~~~~~d~v~~l~~g~i~~~g~ 206 (207)
T cd03369 146 VLVLDEATASIDYATDALIQKTIREEFTNSTILTIAHRLRTIIDYDKILVMDAGEVKEYDH 206 (207)
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHhhCCEEEEEECCEEEecCC
Confidence 9999999999999 455555555332 4799999999865 443 66666554
|
NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate. |
| >cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.1e-32 Score=242.86 Aligned_cols=185 Identities=17% Similarity=0.186 Sum_probs=142.8
Q ss_pred EEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCC--------C
Q 021362 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP--------P 149 (313)
Q Consensus 78 l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~--------~ 149 (313)
|+++|+++.|++.. ..+|+|+||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|.+. .
T Consensus 3 l~~~~l~~~~~~~~--~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~~~~~~~~~~~ 77 (221)
T cd03244 3 IEFKNVSLRYRPNL--PPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVE---LSSGSILIDGVDISKIGLHDLR 77 (221)
T ss_pred EEEEEEEEecCCCC--cccccceEEEECCCCEEEEECCCCCCHHHHHHHHHcCCC---CCCCEEEECCEEhHhCCHHHHh
Confidence 78999999997421 129999999999999999999999999999999999999 9999999998653 3
Q ss_pred CeEEEEecCCCCCCcccCCcccChHHHHHhcCCCCCccHHHHHHHHHHhhcC-------------CCccCCCCCCcCCCc
Q 021362 150 DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ-------------GSVYAPSFDHGVGDP 216 (313)
Q Consensus 150 ~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~-------------~~~~~~~LSgG~kqR 216 (313)
+.++|++|++. ++. .|+.||+.+.. ....+++.+.++.++.. .+..+.+||+||+||
T Consensus 78 ~~i~~~~q~~~-l~~--~tv~enl~~~~-------~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~LS~G~~qr 147 (221)
T cd03244 78 SRISIIPQDPV-LFS--GTIRSNLDPFG-------EYSDEELWQALERVGLKEFVESLPGGLDTVVEEGGENLSVGQRQL 147 (221)
T ss_pred hhEEEECCCCc-ccc--chHHHHhCcCC-------CCCHHHHHHHHHHhCcHHHHHhcccccccccccCCCcCCHHHHHH
Confidence 45899999976 333 58999985321 11233445555544411 134667999999999
Q ss_pred chhhhhhccCceEEEEcCCccccCh----hhHHHHHhhccc--eEEEEcChHHHHH--HHh----hcccccCC
Q 021362 217 VEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFDE--KWFIEVDLDTAMQ--RVL----KRHISTGK 277 (313)
Q Consensus 217 v~ia~al~~~ar~Li~d~~~lllDE----~~~~~l~~l~~~--~i~vtHd~~~~~~--rv~----griv~~G~ 277 (313)
++||++++.+++++++|+|+..||. .+++.|+++... .+++|||++++.. +++ |++++.|+
T Consensus 148 ~~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~i~~l~~g~~~~~~~ 220 (221)
T cd03244 148 LCLARALLRKSKILVLDEATASVDPETDALIQKTIREAFKDCTVLTIAHRLDTIIDSDRILVLDKGRVVEFDS 220 (221)
T ss_pred HHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHhhCCEEEEEECCeEEecCC
Confidence 9999999999999999999999999 455555555332 4799999999866 433 66665553
|
This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. |
| >TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.9e-32 Score=280.39 Aligned_cols=193 Identities=16% Similarity=0.140 Sum_probs=157.3
Q ss_pred EEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCCC-------
Q 021362 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPP------- 149 (313)
Q Consensus 77 ~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~~------- 149 (313)
-|+++||+++|++.. ..+|+|+||+|++||.++|+|+||||||||+|+|+|++. |++|+|.++|.+..
T Consensus 451 ~I~~~nvsf~Y~~~~--~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~---p~~G~I~idg~~i~~~~~~~l 525 (686)
T TIGR03797 451 AIEVDRVTFRYRPDG--PLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFET---PESGSVFYDGQDLAGLDVQAV 525 (686)
T ss_pred eEEEEEEEEEcCCCC--ccceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCCEEEECCEEcCcCCHHHH
Confidence 499999999996421 239999999999999999999999999999999999999 99999999997743
Q ss_pred -CeEEEEecCCCCCCcccCCcccChHHHHHhcCCCCCccHHHHHHHHHHhhc---------CCCc----cCCCCCCcCCC
Q 021362 150 -DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN---------QGSV----YAPSFDHGVGD 215 (313)
Q Consensus 150 -~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~~~~~~~~~~~~l~~l~~---------~~~~----~~~~LSgG~kq 215 (313)
+.++|++||++.+. -|++||+.++ .+ .+.+++.++++..+. +.+. ....|||||||
T Consensus 526 r~~i~~v~Q~~~lf~---gTI~eNi~~~-----~~--~~~e~i~~al~~a~l~~~i~~lp~G~dt~ige~G~~LSGGQrQ 595 (686)
T TIGR03797 526 RRQLGVVLQNGRLMS---GSIFENIAGG-----AP--LTLDEAWEAARMAGLAEDIRAMPMGMHTVISEGGGTLSGGQRQ 595 (686)
T ss_pred HhccEEEccCCccCc---ccHHHHHhcC-----CC--CCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHH
Confidence 46999999977654 4999999764 22 244556666665541 2222 23479999999
Q ss_pred cchhhhhhccCceEEEEcCCccccCh----hhHHHHHhhccceEEEEcChHHHHH--HHh----hcccccCCchHHHHH
Q 021362 216 PVEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFDEKWFIEVDLDTAMQ--RVL----KRHISTGKPPDVAKW 284 (313)
Q Consensus 216 Rv~ia~al~~~ar~Li~d~~~lllDE----~~~~~l~~l~~~~i~vtHd~~~~~~--rv~----griv~~G~~~ev~~~ 284 (313)
|++||||+..++++|++|+++.-||. .+.+.|+++....|+|||+++.+.. |++ |++++.|+.+++.+.
T Consensus 596 RialARAll~~p~iLiLDEpTS~LD~~te~~i~~~L~~~~~T~IiItHr~~~i~~~D~Iivl~~G~iv~~G~~~~Ll~~ 674 (686)
T TIGR03797 596 RLLIARALVRKPRILLFDEATSALDNRTQAIVSESLERLKVTRIVIAHRLSTIRNADRIYVLDAGRVVQQGTYDELMAR 674 (686)
T ss_pred HHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHhCCeEEEEecChHHHHcCCEEEEEECCEEEEECCHHHHHhC
Confidence 99999999999999999999999999 5566666664456899999999877 665 999999999888643
|
Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif |
| >PRK13546 teichoic acids export protein ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.7e-32 Score=246.62 Aligned_cols=198 Identities=14% Similarity=0.158 Sum_probs=152.6
Q ss_pred EEEEccceEEcccc----------------ccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCce
Q 021362 77 VVEARCMDEVYDAL----------------AQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS 140 (313)
Q Consensus 77 ~l~~~~l~~~y~~~----------------~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~ 140 (313)
-|+++||+|.|... .....+|+++||+|++|++++|+||||||||||+++|+|+++ |++|+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~is~~i~~Ge~~~liG~NGsGKSTLlk~L~Gl~~---p~~G~ 80 (264)
T PRK13546 4 SVNIKNVTKEYRIYRTNKERMKDALIPKHKNKTFFALDDISLKAYEGDVIGLVGINGSGKSTLSNIIGGSLS---PTVGK 80 (264)
T ss_pred eEEEeeeEEEEEecccchHHHHHHhhhhccCCceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcC---CCceE
Confidence 37889998888542 123458999999999999999999999999999999999999 99999
Q ss_pred eecCCCCCCCeEEEEecCCCCCCcccCCcccChHHHHHhcCCCCCccHHHHHHHHHHhhc--CCCccCCCCCCcCCCcch
Q 021362 141 SFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVE 218 (313)
Q Consensus 141 i~~~g~~~~~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~~~~~~~~~~~~l~~l~~--~~~~~~~~LSgG~kqRv~ 218 (313)
|.++|. +++++|+.... ..+|+.+|+.+.....+.......+.+..+++.++. ..+..+.+||+||+||++
T Consensus 81 I~~~g~-----~~~~~~~~~~~--~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~ 153 (264)
T PRK13546 81 VDRNGE-----VSVIAISAGLS--GQLTGIENIEFKMLCMGFKRKEIKAMTPKIIEFSELGEFIYQPVKKYSSGMRAKLG 153 (264)
T ss_pred EEECCE-----EeEEecccCCC--CCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCCcccCCHHHHHHHH
Confidence 999884 45667764332 247999999875444333222223334556666553 345577799999999999
Q ss_pred hhhhhccCceEEEEcCCccccCh----hhHHHHHhhcc---ceEEEEcChHHHHH---HHh----hcccccCCchHHHHH
Q 021362 219 DDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFD---EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAKW 284 (313)
Q Consensus 219 ia~al~~~ar~Li~d~~~lllDE----~~~~~l~~l~~---~~i~vtHd~~~~~~---rv~----griv~~G~~~ev~~~ 284 (313)
+|++++.++++|++|+|+..||. .+++.|.++.. ..|++|||++++.. +++ |+++..|+++++...
T Consensus 154 Laral~~~p~iLlLDEPt~gLD~~~~~~l~~~L~~~~~~g~tiIiisH~~~~i~~~~d~i~~l~~G~i~~~g~~~~~~~~ 233 (264)
T PRK13546 154 FSINITVNPDILVIDEALSVGDQTFAQKCLDKIYEFKEQNKTIFFVSHNLGQVRQFCTKIAWIEGGKLKDYGELDDVLPK 233 (264)
T ss_pred HHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHcCEEEEEECCEEEEeCCHHHHHHH
Confidence 99999999999999999999998 45555555532 24799999999876 554 899999998887654
|
|
| >cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1 | Back alignment and domain information |
|---|
Probab=99.97 E-value=7e-33 Score=248.66 Aligned_cols=193 Identities=13% Similarity=0.123 Sum_probs=146.2
Q ss_pred EEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCC--------C
Q 021362 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP--------P 149 (313)
Q Consensus 78 l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~--------~ 149 (313)
|+++|+++.|++.. ...+|+|+||++++|++++|+||||||||||+++|+|+++ |++|+|.++|.+. .
T Consensus 1 l~i~~l~~~~~~~~-~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~---~~~G~i~~~g~~~~~~~~~~~~ 76 (238)
T cd03249 1 IEFKNVSFRYPSRP-DVPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYD---PTSGEILLDGVDIRDLNLRWLR 76 (238)
T ss_pred CeEEEEEEecCCCC-CccceeceEEEecCCCEEEEEeCCCCCHHHHHHHHhccCC---CCCCEEEECCEehhhcCHHHHH
Confidence 46899999997421 1238999999999999999999999999999999999999 9999999999653 2
Q ss_pred CeEEEEecCCCCCCcccCCcccChHHHHHhcCCCCCccHHHHH---------HHHHHhh----cCCCccCCCCCCcCCCc
Q 021362 150 DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLL---------NCLKNLR----NQGSVYAPSFDHGVGDP 216 (313)
Q Consensus 150 ~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~~~~~~~~~~---------~~l~~l~----~~~~~~~~~LSgG~kqR 216 (313)
..++|++|++..+ . .|+.||+.+..... ..+.+. ++++.+. ...+..+.+|||||+||
T Consensus 77 ~~i~~~~q~~~~~-~--~tv~e~l~~~~~~~------~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qr 147 (238)
T cd03249 77 SQIGLVSQEPVLF-D--GTIAENIRYGKPDA------TDEEVEEAAKKANIHDFIMSLPDGYDTLVGERGSQLSGGQKQR 147 (238)
T ss_pred hhEEEECCchhhh-h--hhHHHHhhccCCCC------CHHHHHHHHHHcChHHHHHhhccccceeeccCCccCCHHHHHH
Confidence 3599999996533 2 58999987642211 111111 2222221 12344567999999999
Q ss_pred chhhhhhccCceEEEEcCCccccCh----hhHHHHHhhcc--ceEEEEcChHHHHH--HHh----hcccccCCchHHHH
Q 021362 217 VEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFD--EKWFIEVDLDTAMQ--RVL----KRHISTGKPPDVAK 283 (313)
Q Consensus 217 v~ia~al~~~ar~Li~d~~~lllDE----~~~~~l~~l~~--~~i~vtHd~~~~~~--rv~----griv~~G~~~ev~~ 283 (313)
++||++++.++++|++|+|+..||. .+++.|+++.. ..+++|||++++.. +++ |++++.|+.+++..
T Consensus 148 v~la~al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~g~~vi~~sh~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~ 226 (238)
T cd03249 148 IAIARALLRNPKILLLDEATSALDAESEKLVQEALDRAMKGRTTIVIAHRLSTIRNADLIAVLQNGQVVEQGTHDELMA 226 (238)
T ss_pred HHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHhhCCEEEEEECCEEEEeCCHHHHhh
Confidence 9999999999999999999999999 55566655542 24799999999865 544 88888888777644
|
In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another. |
| >TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.3e-32 Score=272.06 Aligned_cols=196 Identities=14% Similarity=0.091 Sum_probs=153.2
Q ss_pred EEEEccceEEcc---ccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCC-CCceeecCCCCC----
Q 021362 77 VVEARCMDEVYD---ALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWP-QKASSFDSQVKP---- 148 (313)
Q Consensus 77 ~l~~~~l~~~y~---~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p-~~G~i~~~g~~~---- 148 (313)
+|+++|+++.|+ +.. +|+++||+|++||+++|+||||||||||+|+|+|+++ | ++|+|.++|++.
T Consensus 257 ~l~~~~l~~~~~~~~~~~----~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~---p~~~G~i~~~g~~~~~~~ 329 (500)
T TIGR02633 257 ILEARNLTCWDVINPHRK----RVDDVSFSLRRGEILGVAGLVGAGRTELVQALFGAYP---GKFEGNVFINGKPVDIRN 329 (500)
T ss_pred eEEEeCCccccccccccc----ccccceeEEeCCcEEEEeCCCCCCHHHHHHHHhCCCC---CCCCeEEEECCEECCCCC
Confidence 799999999994 334 8999999999999999999999999999999999997 7 799999998653
Q ss_pred -----CCeEEEEecCCC--CCCcccCCcccChHHHHH--hcC---CCCCccHHHHHHHHHHhhcC---CCccCCCCCCcC
Q 021362 149 -----PDVATVLPMDGF--HLYLSQLDAMEDPKEAHA--RRG---APWTFNPLLLLNCLKNLRNQ---GSVYAPSFDHGV 213 (313)
Q Consensus 149 -----~~~i~~v~qd~~--~~~~~~ltv~e~~~~~~~--~~~---~~~~~~~~~~~~~l~~l~~~---~~~~~~~LSgG~ 213 (313)
.+.++|++|+.. .++ +.+|+.+|+.+... ... .......+++.++++.++.. .++++.+|||||
T Consensus 330 ~~~~~~~~i~~v~q~~~~~~l~-~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq 408 (500)
T TIGR02633 330 PAQAIRAGIAMVPEDRKRHGIV-PILGVGKNITLSVLKSFCFKMRIDAAAELQIIGSAIQRLKVKTASPFLPIGRLSGGN 408 (500)
T ss_pred HHHHHhCCCEEcCcchhhCCcC-CCCCHHHHhcchhhhhhccCCcCCHHHHHHHHHHHHHhcCccCCCccCccccCCHHH
Confidence 235899999952 222 25899999987532 111 11112335678889998853 366778999999
Q ss_pred CCcchhhhhhccCceEEEEcCCccccCh----hhHHHHHhhccc---eEEEEcChHHHHH---HHh----hcccccCCch
Q 021362 214 GDPVEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFDE---KWFIEVDLDTAMQ---RVL----KRHISTGKPP 279 (313)
Q Consensus 214 kqRv~ia~al~~~ar~Li~d~~~lllDE----~~~~~l~~l~~~---~i~vtHd~~~~~~---rv~----griv~~G~~~ 279 (313)
|||++||++++.++++|++|+|+..||. .+++.|.++.++ .|++|||++++.. |++ |+++..++..
T Consensus 409 kqrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~~~~~ 488 (500)
T TIGR02633 409 QQKAVLAKMLLTNPRVLILDEPTRGVDVGAKYEIYKLINQLAQEGVAIIVVSSELAEVLGLSDRVLVIGEGKLKGDFVNH 488 (500)
T ss_pred HHHHHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEEccc
Confidence 9999999999999999999999999999 444455555433 4799999999986 554 7777665444
Q ss_pred H
Q 021362 280 D 280 (313)
Q Consensus 280 e 280 (313)
+
T Consensus 489 ~ 489 (500)
T TIGR02633 489 A 489 (500)
T ss_pred c
Confidence 3
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005). |
| >PRK03695 vitamin B12-transporter ATPase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.7e-32 Score=248.00 Aligned_cols=189 Identities=17% Similarity=0.145 Sum_probs=148.1
Q ss_pred EEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCCC--------C
Q 021362 79 EARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPP--------D 150 (313)
Q Consensus 79 ~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~~--------~ 150 (313)
+++||++. . +|+|+||+|++|++++|+||||||||||+++|+|++ |.+|+|.++|.+.. .
T Consensus 2 ~~~~l~~~----~----~l~~vsl~i~~Gei~~l~G~nGsGKSTLl~~l~Gl~----~~~G~i~~~g~~i~~~~~~~~~~ 69 (248)
T PRK03695 2 QLNDVAVS----T----RLGPLSAEVRAGEILHLVGPNGAGKSTLLARMAGLL----PGSGSIQFAGQPLEAWSAAELAR 69 (248)
T ss_pred cccccchh----c----eecceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCC----CCCeEEEECCEecCcCCHHHHhh
Confidence 56778774 2 799999999999999999999999999999999998 45999999997532 3
Q ss_pred eEEEEecCCCCCCcccCCcccChHHHHHhcCCCCCccHHHHHHHHHHhhcC--CCccCCCCCCcCCCcchhhhhhcc---
Q 021362 151 VATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGL--- 225 (313)
Q Consensus 151 ~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~~~~~LSgG~kqRv~ia~al~~--- 225 (313)
.++|++|++..++ .+|+.+|+.+.... +.......+++.++++.++.. .+..+.+||+||+||++||++++.
T Consensus 70 ~i~~v~q~~~~~~--~~tv~~nl~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~~~ 146 (248)
T PRK03695 70 HRAYLSQQQTPPF--AMPVFQYLTLHQPD-KTRTEAVASALNEVAEALGLDDKLGRSVNQLSGGEWQRVRLAAVVLQVWP 146 (248)
T ss_pred heEEecccCccCC--CccHHHHHHhcCcc-CCCcHHHHHHHHHHHHHcCCHhHhcCCcccCCHHHHHHHHHHHHHhcccc
Confidence 4899999865444 37999998765321 112222345677888888743 366778999999999999999997
Q ss_pred ----CceEEEEcCCccccCh----hhHHHHHhhccc---eEEEEcChHHHHH---HHh----hcccccCCchHHH
Q 021362 226 ----QHKVVIVDGNYLFLDG----GVWKDVSSMFDE---KWFIEVDLDTAMQ---RVL----KRHISTGKPPDVA 282 (313)
Q Consensus 226 ----~ar~Li~d~~~lllDE----~~~~~l~~l~~~---~i~vtHd~~~~~~---rv~----griv~~G~~~ev~ 282 (313)
++++|++|+|+..||. .+.+.|+++.++ .|++|||++++.. +++ |++++.|.++++.
T Consensus 147 ~~~p~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 221 (248)
T PRK03695 147 DINPAGQLLLLDEPMNSLDVAQQAALDRLLSELCQQGIAVVMSSHDLNHTLRHADRVWLLKQGKLLASGRRDEVL 221 (248)
T ss_pred ccCCCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHHHh
Confidence 6799999999999999 455555555432 4699999998876 554 8999999887764
|
|
| >PRK09580 sufC cysteine desulfurase ATPase component; Reviewed | Back alignment and domain information |
|---|
Probab=99.97 E-value=7.8e-32 Score=243.19 Aligned_cols=196 Identities=16% Similarity=0.016 Sum_probs=144.6
Q ss_pred EEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHh--cccCCCCceeecCCCCCC-----
Q 021362 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRI--NKIWPQKASSFDSQVKPP----- 149 (313)
Q Consensus 77 ~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~--~~~~p~~G~i~~~g~~~~----- 149 (313)
||+++|+++.|++.. +|+++||+|++|++++|+||||||||||+++|+|++ + |++|+|.++|.+..
T Consensus 1 ~i~~~nl~~~~~~~~----~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~---~~~G~i~~~g~~~~~~~~~ 73 (248)
T PRK09580 1 MLSIKDLHVSVEDKA----ILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGREDYE---VTGGTVEFKGKDLLELSPE 73 (248)
T ss_pred CeEEEEEEEEeCCee----eeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCccCC---CCceEEEECCCccccCCHH
Confidence 489999999998766 999999999999999999999999999999999994 6 99999999997532
Q ss_pred ----CeEEEEecCCCCCCcccCCcccChHHHHHh---cCCCCC----ccHHHHHHHHHHhhcC---CCccCC-CCCCcCC
Q 021362 150 ----DVATVLPMDGFHLYLSQLDAMEDPKEAHAR---RGAPWT----FNPLLLLNCLKNLRNQ---GSVYAP-SFDHGVG 214 (313)
Q Consensus 150 ----~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~---~~~~~~----~~~~~~~~~l~~l~~~---~~~~~~-~LSgG~k 214 (313)
..++|++|++..+. .++..+++...... ...... ...+.+.+.++.++.. .+..+. +|||||+
T Consensus 74 ~~~~~~i~~~~q~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LS~G~~ 151 (248)
T PRK09580 74 DRAGEGIFMAFQYPVEIP--GVSNQFFLQTALNAVRSYRGQEPLDRFDFQDLMEEKIALLKMPEDLLTRSVNVGFSGGEK 151 (248)
T ss_pred HHhhcceEEEecCchhcc--chhHHHHHHHhhhhhhcccccccchHHHHHHHHHHHHHHcCCChhhcccCCCCCCCHHHH
Confidence 34899999965433 24444433222111 000000 1123456667766642 334444 7999999
Q ss_pred CcchhhhhhccCceEEEEcCCccccCh----hhHHHHHhhccc---eEEEEcChHHHHH----HHh----hcccccCCch
Q 021362 215 DPVEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFDE---KWFIEVDLDTAMQ----RVL----KRHISTGKPP 279 (313)
Q Consensus 215 qRv~ia~al~~~ar~Li~d~~~lllDE----~~~~~l~~l~~~---~i~vtHd~~~~~~----rv~----griv~~G~~~ 279 (313)
||++||++++.++++|++|+|+..||. .+.+.|+++.+. .|++|||++++.. +++ |+++..|+++
T Consensus 152 qrv~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~l~~~~~tiii~sH~~~~~~~~~~d~i~~l~~g~i~~~g~~~ 231 (248)
T PRK09580 152 KRNDILQMAVLEPELCILDESDSGLDIDALKIVADGVNSLRDGKRSFIIVTHYQRILDYIKPDYVHVLYQGRIVKSGDFT 231 (248)
T ss_pred HHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhhhCCEEEEEECCeEEEeCCHH
Confidence 999999999999999999999999999 344444455432 4799999998864 333 8888888776
Q ss_pred HH
Q 021362 280 DV 281 (313)
Q Consensus 280 ev 281 (313)
.+
T Consensus 232 ~~ 233 (248)
T PRK09580 232 LV 233 (248)
T ss_pred HH
Confidence 44
|
|
| >PRK11176 lipid transporter ATP-binding/permease protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.3e-32 Score=273.73 Aligned_cols=195 Identities=13% Similarity=0.107 Sum_probs=157.6
Q ss_pred EEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCC--------
Q 021362 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP-------- 148 (313)
Q Consensus 77 ~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~-------- 148 (313)
-|+++|+++.|++.. ..+|+|+||+|++|+.++|+|+||||||||+++|+|+++ |++|+|.++|.+.
T Consensus 341 ~i~~~~vsf~y~~~~--~~il~~i~l~i~~G~~~aIvG~sGsGKSTLl~ll~gl~~---p~~G~I~i~g~~i~~~~~~~~ 415 (582)
T PRK11176 341 DIEFRNVTFTYPGKE--VPALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYD---IDEGEILLDGHDLRDYTLASL 415 (582)
T ss_pred eEEEEEEEEecCCCC--CccccCceEEeCCCCEEEEECCCCCCHHHHHHHHHhccC---CCCceEEECCEEhhhcCHHHH
Confidence 499999999996521 239999999999999999999999999999999999999 9999999999764
Q ss_pred CCeEEEEecCCCCCCcccCCcccChHHHHHhcCCCCCccHHHHHHHHHHhh---------cCCCcc----CCCCCCcCCC
Q 021362 149 PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLR---------NQGSVY----APSFDHGVGD 215 (313)
Q Consensus 149 ~~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~~~~~~~~~~~~l~~l~---------~~~~~~----~~~LSgG~kq 215 (313)
.+.++|++||++.+. -|++||+.++ .+...+.+++.++++..+ .+.+.. ...|||||||
T Consensus 416 ~~~i~~v~Q~~~lf~---~Ti~~Ni~~~-----~~~~~~~~~i~~al~~~~l~~~i~~lp~Gldt~ig~~g~~LSGGqrQ 487 (582)
T PRK11176 416 RNQVALVSQNVHLFN---DTIANNIAYA-----RTEQYSREQIEEAARMAYAMDFINKMDNGLDTVIGENGVLLSGGQRQ 487 (582)
T ss_pred HhhceEEccCceeec---chHHHHHhcC-----CCCCCCHHHHHHHHHHhCcHHHHHhcccccCceeCCCCCcCCHHHHH
Confidence 246999999977554 5999999654 222234556666666544 222332 2479999999
Q ss_pred cchhhhhhccCceEEEEcCCccccCh----hhHHHHHhhcc--ceEEEEcChHHHHH--HHh----hcccccCCchHHHH
Q 021362 216 PVEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFD--EKWFIEVDLDTAMQ--RVL----KRHISTGKPPDVAK 283 (313)
Q Consensus 216 Rv~ia~al~~~ar~Li~d~~~lllDE----~~~~~l~~l~~--~~i~vtHd~~~~~~--rv~----griv~~G~~~ev~~ 283 (313)
|++|||++..++++|++|+++.-||+ .+.+.|.++.. ..|+|||+++.+.. +++ |++++.|+.+++.+
T Consensus 488 Ri~LARall~~~~ililDEptsaLD~~t~~~i~~~l~~~~~~~tvI~VtHr~~~~~~~D~Ii~l~~g~i~e~g~~~~l~~ 567 (582)
T PRK11176 488 RIAIARALLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIEKADEILVVEDGEIVERGTHAELLA 567 (582)
T ss_pred HHHHHHHHHhCCCEEEEECccccCCHHHHHHHHHHHHHHhCCCEEEEEecchHHHHhCCEEEEEECCEEEEeCCHHHHHh
Confidence 99999999999999999999999999 55666666643 35799999998876 665 99999999998865
Q ss_pred H
Q 021362 284 W 284 (313)
Q Consensus 284 ~ 284 (313)
.
T Consensus 568 ~ 568 (582)
T PRK11176 568 Q 568 (582)
T ss_pred C
Confidence 4
|
|
| >TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.8e-32 Score=280.20 Aligned_cols=194 Identities=16% Similarity=0.116 Sum_probs=156.7
Q ss_pred EEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCC--------
Q 021362 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP-------- 148 (313)
Q Consensus 77 ~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~-------- 148 (313)
.|+++|++++|++.. ..+|+|+||+|++||.++|+||||||||||+++|+|+++ |++|+|.++|.+.
T Consensus 477 ~I~~~~vsf~y~~~~--~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~---p~~G~I~idg~~i~~~~~~~l 551 (710)
T TIGR03796 477 YVELRNITFGYSPLE--PPLIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQ---PWSGEILFDGIPREEIPREVL 551 (710)
T ss_pred eEEEEEEEEecCCCC--CCcccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC---CCCcEEEECCEeHHHCCHHHH
Confidence 499999999997521 239999999999999999999999999999999999999 9999999999773
Q ss_pred CCeEEEEecCCCCCCcccCCcccChHHHHHhcCCCCCccHHHHHHHHHHhhc---------CCCc----cCCCCCCcCCC
Q 021362 149 PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN---------QGSV----YAPSFDHGVGD 215 (313)
Q Consensus 149 ~~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~~~~~~~~~~~~l~~l~~---------~~~~----~~~~LSgG~kq 215 (313)
++.++|++|+++.+. -|++||+.++ .+ ..+.+++.++++..+. +.+. ....|||||||
T Consensus 552 r~~i~~v~Q~~~lf~---gTi~eNi~l~-----~~-~~~~~~i~~al~~~~l~~~i~~lp~gl~t~i~e~G~~LSGGQrQ 622 (710)
T TIGR03796 552 ANSVAMVDQDIFLFE---GTVRDNLTLW-----DP-TIPDADLVRACKDAAIHDVITSRPGGYDAELAEGGANLSGGQRQ 622 (710)
T ss_pred HhheeEEecCChhhh---ccHHHHhhCC-----CC-CCCHHHHHHHHHHhCCHHHHHhCcCcccceeccCCCCCCHHHHH
Confidence 356999999977554 5999999753 12 2344556666665441 2222 23479999999
Q ss_pred cchhhhhhccCceEEEEcCCccccCh----hhHHHHHhhccceEEEEcChHHHHH--HHh----hcccccCCchHHHHH
Q 021362 216 PVEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFDEKWFIEVDLDTAMQ--RVL----KRHISTGKPPDVAKW 284 (313)
Q Consensus 216 Rv~ia~al~~~ar~Li~d~~~lllDE----~~~~~l~~l~~~~i~vtHd~~~~~~--rv~----griv~~G~~~ev~~~ 284 (313)
|++||||+..++++|++|+++.-||+ .+.+.|++.....|+|||+++.+.. |++ |++++.|+.+++.+.
T Consensus 623 RiaLARall~~p~iliLDEptS~LD~~te~~i~~~l~~~~~T~IiitHrl~~i~~~D~Iivl~~G~i~~~G~~~~Ll~~ 701 (710)
T TIGR03796 623 RLEIARALVRNPSILILDEATSALDPETEKIIDDNLRRRGCTCIIVAHRLSTIRDCDEIIVLERGKVVQRGTHEELWAV 701 (710)
T ss_pred HHHHHHHHhhCCCEEEEECccccCCHHHHHHHHHHHHhcCCEEEEEecCHHHHHhCCEEEEEeCCEEEEecCHHHHHHc
Confidence 99999999999999999999999999 4555555533345799999999877 666 999999999998653
|
This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin. |
| >cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.4e-32 Score=234.98 Aligned_cols=149 Identities=15% Similarity=0.169 Sum_probs=124.8
Q ss_pred EEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCC-------CC
Q 021362 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP-------PD 150 (313)
Q Consensus 78 l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~-------~~ 150 (313)
|+++|+++.|++.. ..+|+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.+. .+
T Consensus 1 i~~~~~~~~~~~~~--~~~l~~i~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~---~~~G~i~~~g~~~~~~~~~~~~ 75 (178)
T cd03247 1 LSINNVSFSYPEQE--QQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLK---PQQGEITLDGVPVSDLEKALSS 75 (178)
T ss_pred CEEEEEEEEeCCCC--ccceEEEEEEEcCCCEEEEECCCCCCHHHHHHHHhccCC---CCCCEEEECCEEHHHHHHHHHh
Confidence 46899999997641 128999999999999999999999999999999999999 9999999999753 24
Q ss_pred eEEEEecCCCCCCcccCCcccChHHHHHhcCCCCCccHHHHHHHHHHhhcCCCccCCCCCCcCCCcchhhhhhccCceEE
Q 021362 151 VATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVV 230 (313)
Q Consensus 151 ~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~LSgG~kqRv~ia~al~~~ar~L 230 (313)
.++|++|++.. +. .|++||+ +.+||+||+||++||++++.++++|
T Consensus 76 ~i~~~~q~~~~-~~--~tv~~~i--------------------------------~~~LS~G~~qrv~laral~~~p~~l 120 (178)
T cd03247 76 LISVLNQRPYL-FD--TTLRNNL--------------------------------GRRFSGGERQRLALARILLQDAPIV 120 (178)
T ss_pred hEEEEccCCee-ec--ccHHHhh--------------------------------cccCCHHHHHHHHHHHHHhcCCCEE
Confidence 58999998643 32 4777765 5699999999999999999999999
Q ss_pred EEcCCccccCh----hhHHHHHhhccc--eEEEEcChHHHHH
Q 021362 231 IVDGNYLFLDG----GVWKDVSSMFDE--KWFIEVDLDTAMQ 266 (313)
Q Consensus 231 i~d~~~lllDE----~~~~~l~~l~~~--~i~vtHd~~~~~~ 266 (313)
++|+|+..||. .+++.|.++... .+++|||++++..
T Consensus 121 llDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~ 162 (178)
T cd03247 121 LLDEPTVGLDPITERQLLSLIFEVLKDKTLIWITHHLTGIEH 162 (178)
T ss_pred EEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHh
Confidence 99999999998 455555555332 4799999998854
|
The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism. |
| >PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.7e-32 Score=263.94 Aligned_cols=198 Identities=15% Similarity=0.124 Sum_probs=153.9
Q ss_pred cEEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCCCCeEEEE
Q 021362 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVL 155 (313)
Q Consensus 76 ~~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~~~~i~~v 155 (313)
++++++||++.|++.. ...+|+++||+|++|+++||+||||||||||+++|+|+++ |++|+|.++|.+. ++
T Consensus 20 ~mL~lknL~~~~~~~~-~~~IL~nVSfsI~~GEivgIiGpNGSGKSTLLkiLaGLl~---P~sGeI~I~G~~~-----~i 90 (549)
T PRK13545 20 PFDKLKDLFFRSKDGE-YHYALNNISFEVPEGEIVGIIGLNGSGKSTLSNLIAGVTM---PNKGTVDIKGSAA-----LI 90 (549)
T ss_pred ceeEEEEEEEecCCCc-cceEEeeeEEEEeCCCEEEEEcCCCCCHHHHHHHHhCCCC---CCceEEEECCEee-----eE
Confidence 3799999999997642 1238999999999999999999999999999999999999 9999999998642 22
Q ss_pred ecCCCCCCcccCCcccChHHHHHhcCCCCCccHHHHHHHHHHhhc--CCCccCCCCCCcCCCcchhhhhhccCceEEEEc
Q 021362 156 PMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVD 233 (313)
Q Consensus 156 ~qd~~~~~~~~ltv~e~~~~~~~~~~~~~~~~~~~~~~~l~~l~~--~~~~~~~~LSgG~kqRv~ia~al~~~ar~Li~d 233 (313)
.+.... .+.+|+.||+.+.....+.......+++.++++.++. ..+.++.+||||||||++||+|++.++++|++|
T Consensus 91 ~~~~~l--~~~lTV~EnL~l~~~~~~~~~~e~~e~i~elLe~lgL~~~ld~~~~~LSGGQrQRVaLArAL~~~P~LLLLD 168 (549)
T PRK13545 91 AISSGL--NGQLTGIENIELKGLMMGLTKEKIKEIIPEIIEFADIGKFIYQPVKTYSSGMKSRLGFAISVHINPDILVID 168 (549)
T ss_pred Eecccc--CCCCcHHHHHHhhhhhcCCCHHHHHHHHHHHHHHcCChhHhhCCcccCCHHHHHHHHHHHHHHhCCCEEEEE
Confidence 222222 2247999999875443333322233445677777774 346677899999999999999999999999999
Q ss_pred CCccccCh----hhHHHHHhhccc---eEEEEcChHHHHH---HHh----hcccccCCchHHHHH
Q 021362 234 GNYLFLDG----GVWKDVSSMFDE---KWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAKW 284 (313)
Q Consensus 234 ~~~lllDE----~~~~~l~~l~~~---~i~vtHd~~~~~~---rv~----griv~~G~~~ev~~~ 284 (313)
+|+..||. .+++.|.++.+. .|++|||++++.. |++ |+++..|+++++...
T Consensus 169 EPTsgLD~~sr~~LlelL~el~~~G~TIIIVSHdl~~i~~l~DrIivL~~GkIv~~G~~~el~~~ 233 (549)
T PRK13545 169 EALSVGDQTFTKKCLDKMNEFKEQGKTIFFISHSLSQVKSFCTKALWLHYGQVKEYGDIKEVVDH 233 (549)
T ss_pred CCcccCCHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhCCEEEEEECCEEEEECCHHHHHhh
Confidence 99999999 455566555432 4799999999876 554 899999998887643
|
|
| >cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR) | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.3e-32 Score=236.60 Aligned_cols=158 Identities=15% Similarity=0.098 Sum_probs=128.3
Q ss_pred EEEEccceEEccccc--cccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHh--cccCCCCceeecCCCCC----
Q 021362 77 VVEARCMDEVYDALA--QRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRI--NKIWPQKASSFDSQVKP---- 148 (313)
Q Consensus 77 ~l~~~~l~~~y~~~~--~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~--~~~~p~~G~i~~~g~~~---- 148 (313)
.|+++|+++.|++.. ....+|+++||++++|++++|+||||||||||+++|+|++ + |++|+|.++|++.
T Consensus 3 ~l~~~~ls~~~~~~~~~~~~~~l~~~~~~i~~Ge~~~l~G~nGsGKStLl~~i~Gl~~~~---~~~G~i~~~g~~~~~~~ 79 (194)
T cd03213 3 TLSFRNLTVTVKSSPSKSGKQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGL---GVSGEVLINGRPLDKRS 79 (194)
T ss_pred EEEEEeeEEEEecCCCcccccceecceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---CCceEEEECCEeCchHh
Confidence 488999999997510 0123999999999999999999999999999999999999 8 9999999999763
Q ss_pred -CCeEEEEecCCCCCCcccCCcccChHHHHHhcCCCCCccHHHHHHHHHHhhcCCCccCCCCCCcCCCcchhhhhhccCc
Q 021362 149 -PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQH 227 (313)
Q Consensus 149 -~~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~LSgG~kqRv~ia~al~~~a 227 (313)
...++|++|++..++ .+|+.+|+.+..... +||+||+||++||++++.++
T Consensus 80 ~~~~i~~~~q~~~~~~--~~t~~~~i~~~~~~~---------------------------~LS~G~~qrv~laral~~~p 130 (194)
T cd03213 80 FRKIIGYVPQDDILHP--TLTVRETLMFAAKLR---------------------------GLSGGERKRVSIALELVSNP 130 (194)
T ss_pred hhheEEEccCcccCCC--CCcHHHHHHHHHHhc---------------------------cCCHHHHHHHHHHHHHHcCC
Confidence 346899999965433 479999886542110 89999999999999999999
Q ss_pred eEEEEcCCccccCh----hhHHHHHhhcc---ceEEEEcChH-HHHH
Q 021362 228 KVVIVDGNYLFLDG----GVWKDVSSMFD---EKWFIEVDLD-TAMQ 266 (313)
Q Consensus 228 r~Li~d~~~lllDE----~~~~~l~~l~~---~~i~vtHd~~-~~~~ 266 (313)
+++++|+|+..||. .+++.|+++.+ ..+++|||++ ++..
T Consensus 131 ~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~ 177 (194)
T cd03213 131 SLLFLDEPTSGLDSSSALQVMSLLRRLADTGRTIICSIHQPSSEIFE 177 (194)
T ss_pred CEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEecCchHHHHH
Confidence 99999999999999 45555555543 2479999997 4543
|
DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus. |
| >cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.9e-32 Score=244.00 Aligned_cols=184 Identities=14% Similarity=0.109 Sum_probs=140.3
Q ss_pred cEEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCC-------
Q 021362 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP------- 148 (313)
Q Consensus 76 ~~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~------- 148 (313)
++|+++|+++.|++.. ...+|+++||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|.+.
T Consensus 10 ~~l~~~~l~~~~~~~~-~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---~~~G~i~~~g~~~~~~~~~~ 85 (226)
T cd03248 10 GIVKFQNVTFAYPTRP-DTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQ---PQGGQVLLDGKPISQYEHKY 85 (226)
T ss_pred ceEEEEEEEEEeCCCC-CCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcC---CCCcEEEECCCchHHcCHHH
Confidence 4799999999997521 1239999999999999999999999999999999999999 9999999999753
Q ss_pred -CCeEEEEecCCCCCCcccCCcccChHHHHHhcCCCC---CccHHHHHHHHHHh--h--cCCCccCCCCCCcCCCcchhh
Q 021362 149 -PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPW---TFNPLLLLNCLKNL--R--NQGSVYAPSFDHGVGDPVEDD 220 (313)
Q Consensus 149 -~~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~~---~~~~~~~~~~l~~l--~--~~~~~~~~~LSgG~kqRv~ia 220 (313)
.+.++|++|++.. +. .|+.+|+.+......... ......+.++++.+ + ...+.++.+|||||+||++||
T Consensus 86 ~~~~i~~~~q~~~l-~~--~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgG~~qrv~la 162 (226)
T cd03248 86 LHSKVSLVGQEPVL-FA--RSLQDNIAYGLQSCSFECVKEAAQKAHAHSFISELASGYDTEVGEKGSQLSGGQKQRVAIA 162 (226)
T ss_pred HHhhEEEEecccHH-Hh--hhHHHHhccccCCCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHH
Confidence 2358999999653 32 589999876432110000 00001134556666 3 224556779999999999999
Q ss_pred hhhccCceEEEEcCCccccCh----hhHHHHHhhccc--eEEEEcChHHHHH
Q 021362 221 ILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFDE--KWFIEVDLDTAMQ 266 (313)
Q Consensus 221 ~al~~~ar~Li~d~~~lllDE----~~~~~l~~l~~~--~i~vtHd~~~~~~ 266 (313)
++++.++++|++|+|+..||. .+++.|+++.+. .+++|||++++..
T Consensus 163 ral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~ 214 (226)
T cd03248 163 RALIRNPQVLILDEATSALDAESEQQVQQALYDWPERRTVLVIAHRLSTVER 214 (226)
T ss_pred HHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEECCHHHHHh
Confidence 999999999999999999999 445555554432 4799999998853
|
Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes. |
| >PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.7e-32 Score=272.39 Aligned_cols=191 Identities=14% Similarity=0.135 Sum_probs=152.9
Q ss_pred EEEEccceEEcc-ccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCCC------
Q 021362 77 VVEARCMDEVYD-ALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPP------ 149 (313)
Q Consensus 77 ~l~~~~l~~~y~-~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~~------ 149 (313)
-|+++||++.|. +.. +|+|+||+|++|+.++|+||||||||||+++|+|++ |++|+|.++|.+..
T Consensus 349 ~i~~~~vsf~~~~~~~----vL~~i~l~i~~G~~vaIvG~SGsGKSTL~~lL~g~~----p~~G~I~i~g~~i~~~~~~~ 420 (588)
T PRK11174 349 TIEAEDLEILSPDGKT----LAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLGFL----PYQGSLKINGIELRELDPES 420 (588)
T ss_pred eEEEEeeEEeccCCCe----eeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC----CCCcEEEECCEecccCCHHH
Confidence 499999997654 444 999999999999999999999999999999999998 78999999997643
Q ss_pred --CeEEEEecCCCCCCcccCCcccChHHHHHhcCCCCCccHHHHHHHHHHhh---------cCCCcc----CCCCCCcCC
Q 021362 150 --DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLR---------NQGSVY----APSFDHGVG 214 (313)
Q Consensus 150 --~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~~~~~~~~~~~~l~~l~---------~~~~~~----~~~LSgG~k 214 (313)
+.++||+|+++.+. -|++||+.++. + ....+++.++++..+ .+.+.. ...||||||
T Consensus 421 lr~~i~~v~Q~~~LF~---~TI~eNI~~g~-----~-~~~~eei~~al~~a~l~~~i~~lp~G~dT~vge~G~~LSGGQr 491 (588)
T PRK11174 421 WRKHLSWVGQNPQLPH---GTLRDNVLLGN-----P-DASDEQLQQALENAWVSEFLPLLPQGLDTPIGDQAAGLSVGQA 491 (588)
T ss_pred HHhheEEecCCCcCCC---cCHHHHhhcCC-----C-CCCHHHHHHHHHHhCHHHHHHhcccccccccccCCCCCCHHHH
Confidence 46999999987654 59999997741 2 223455555555443 223332 337999999
Q ss_pred CcchhhhhhccCceEEEEcCCccccCh----hhHHHHHhhcc--ceEEEEcChHHHHH--HHh----hcccccCCchHHH
Q 021362 215 DPVEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFD--EKWFIEVDLDTAMQ--RVL----KRHISTGKPPDVA 282 (313)
Q Consensus 215 qRv~ia~al~~~ar~Li~d~~~lllDE----~~~~~l~~l~~--~~i~vtHd~~~~~~--rv~----griv~~G~~~ev~ 282 (313)
||++||||++.++++|++|+++.-||. .+.+.|.++.+ ..|+|||+++.+.. +++ |++++.|+.+++.
T Consensus 492 QRialARAll~~~~IliLDE~TSaLD~~te~~i~~~l~~~~~~~TvIiItHrl~~i~~aD~Iivl~~G~i~e~G~~~eL~ 571 (588)
T PRK11174 492 QRLALARALLQPCQLLLLDEPTASLDAHSEQLVMQALNAASRRQTTLMVTHQLEDLAQWDQIWVMQDGQIVQQGDYAELS 571 (588)
T ss_pred HHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHhCCCEEEEEecChHHHHhCCEEEEEeCCeEeecCCHHHHH
Confidence 999999999999999999999999999 45555666543 24799999998877 655 9999999999886
Q ss_pred HH
Q 021362 283 KW 284 (313)
Q Consensus 283 ~~ 284 (313)
+.
T Consensus 572 ~~ 573 (588)
T PRK11174 572 QA 573 (588)
T ss_pred hc
Confidence 54
|
|
| >TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.4e-31 Score=267.54 Aligned_cols=196 Identities=15% Similarity=0.055 Sum_probs=154.1
Q ss_pred cEEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCCCCeEEEE
Q 021362 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVL 155 (313)
Q Consensus 76 ~~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~~~~i~~v 155 (313)
++|+++|+++.|++.. +|+|+||+|++|++++|+||||||||||+++|+|+++ |++|+|.+++. ..++|+
T Consensus 321 ~~l~~~~l~~~~~~~~----~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~---p~~G~i~~~~~---~~i~~v 390 (552)
T TIGR03719 321 KVIEAENLSKGFGDKL----LIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQ---PDSGTIKIGET---VKLAYV 390 (552)
T ss_pred eEEEEeeEEEEECCee----eeccceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCC---CCCeEEEECCc---eEEEEE
Confidence 4799999999998766 9999999999999999999999999999999999999 99999998542 258999
Q ss_pred ecCCCCCCcccCCcccChHHHHHhcCCCCCccHHHHHHHHHHhhcC---CCccCCCCCCcCCCcchhhhhhccCceEEEE
Q 021362 156 PMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ---GSVYAPSFDHGVGDPVEDDILVGLQHKVVIV 232 (313)
Q Consensus 156 ~qd~~~~~~~~ltv~e~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~---~~~~~~~LSgG~kqRv~ia~al~~~ar~Li~ 232 (313)
+|+...++ +.+|+.+|+.+.....+... ......++++.++.. .++++.+||||||||++||++++.++++|++
T Consensus 391 ~q~~~~~~-~~~tv~e~l~~~~~~~~~~~--~~~~~~~~l~~~~l~~~~~~~~~~~LSgGe~qrv~la~al~~~p~lllL 467 (552)
T TIGR03719 391 DQSRDALD-PNKTVWEEISGGLDIIQLGK--REVPSRAYVGRFNFKGSDQQKKVGQLSGGERNRVHLAKTLKSGGNVLLL 467 (552)
T ss_pred eCCccccC-CCCcHHHHHHhhccccccCc--chHHHHHHHHhCCCChhHhcCchhhCCHHHHHHHHHHHHHhhCCCEEEE
Confidence 99853233 25899999987643222221 123456788888853 3667889999999999999999999999999
Q ss_pred cCCccccCh----hhHHHHHhhccceEEEEcChHHHHH---HHh-----hccc-ccCCchHHHHH
Q 021362 233 DGNYLFLDG----GVWKDVSSMFDEKWFIEVDLDTAMQ---RVL-----KRHI-STGKPPDVAKW 284 (313)
Q Consensus 233 d~~~lllDE----~~~~~l~~l~~~~i~vtHd~~~~~~---rv~-----griv-~~G~~~ev~~~ 284 (313)
|+|+..||. .+++.|.++....|+||||++++.. |++ |+++ ..|..++....
T Consensus 468 DEPt~~LD~~~~~~l~~~l~~~~~~viivsHd~~~~~~~~d~i~~l~~~~~~~~~~g~~~~~~~~ 532 (552)
T TIGR03719 468 DEPTNDLDVETLRALEEALLEFAGCAVVISHDRWFLDRIATHILAFEGDSHVEWFEGNYSEYEED 532 (552)
T ss_pred eCCCCCCCHHHHHHHHHHHHHCCCeEEEEeCCHHHHHHhCCEEEEEECCCeEEEeCCCHHHHHHH
Confidence 999999999 4555555554446799999999876 544 2554 45666555433
|
Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. |
| >cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.1e-32 Score=245.14 Aligned_cols=190 Identities=14% Similarity=0.147 Sum_probs=145.5
Q ss_pred EEEccceEEcc-ccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCCC-------
Q 021362 78 VEARCMDEVYD-ALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPP------- 149 (313)
Q Consensus 78 l~~~~l~~~y~-~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~~------- 149 (313)
|+++|+++.|+ +.. +|+|+||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|.+..
T Consensus 1 l~~~~l~~~~~~~~~----~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~---~~~G~v~~~g~~~~~~~~~~~ 73 (236)
T cd03253 1 IEFENVTFAYDPGRP----VLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYD---VSSGSILIDGQDIREVTLDSL 73 (236)
T ss_pred CEEEEEEEEeCCCCc----eeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccC---CCCCEEEECCEEhhhCCHHHH
Confidence 46899999996 344 8999999999999999999999999999999999999 99999999996532
Q ss_pred -CeEEEEecCCCCCCcccCCcccChHHHHHhcCCCCCccHHHHHH---------HHHHhhc----CCCccCCCCCCcCCC
Q 021362 150 -DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLN---------CLKNLRN----QGSVYAPSFDHGVGD 215 (313)
Q Consensus 150 -~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~~~~~~~~~~~---------~l~~l~~----~~~~~~~~LSgG~kq 215 (313)
+.++|++|++..+ . .|+.+|+.+.... . ....+.+ .++.+.. ..+..+.+||+||+|
T Consensus 74 ~~~i~~~~q~~~~~-~--~tv~~nl~~~~~~--~----~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~LS~G~~~ 144 (236)
T cd03253 74 RRAIGVVPQDTVLF-N--DTIGYNIRYGRPD--A----TDEEVIEAAKAAQIHDKIMRFPDGYDTIVGERGLKLSGGEKQ 144 (236)
T ss_pred HhhEEEECCCChhh-c--chHHHHHhhcCCC--C----CHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHH
Confidence 3489999996543 3 5999998764211 1 1111222 2222211 123456699999999
Q ss_pred cchhhhhhccCceEEEEcCCccccCh----hhHHHHHhhcc--ceEEEEcChHHHHH--HHh----hcccccCCchHHHH
Q 021362 216 PVEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFD--EKWFIEVDLDTAMQ--RVL----KRHISTGKPPDVAK 283 (313)
Q Consensus 216 Rv~ia~al~~~ar~Li~d~~~lllDE----~~~~~l~~l~~--~~i~vtHd~~~~~~--rv~----griv~~G~~~ev~~ 283 (313)
|++||++++.++++|++|+|+..||. .+.+.|.++.+ ..|++||+++++.. |++ |+++..|+.+++..
T Consensus 145 rl~la~aL~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sh~~~~~~~~d~~~~l~~g~i~~~~~~~~~~~ 224 (236)
T cd03253 145 RVAIARAILKNPPILLLDEATSALDTHTEREIQAALRDVSKGRTTIVIAHRLSTIVNADKIIVLKDGRIVERGTHEELLA 224 (236)
T ss_pred HHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHHHHhCCEEEEEECCEEEeeCCHHHHhh
Confidence 99999999999999999999999999 45555555543 24799999999866 554 88888888776643
|
Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.3e-32 Score=228.13 Aligned_cols=178 Identities=14% Similarity=0.120 Sum_probs=148.7
Q ss_pred EEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCCC-------
Q 021362 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPP------- 149 (313)
Q Consensus 77 ~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~~------- 149 (313)
.++++++.+.-++.. +|+++||.+.+||+++|.||||||||||+|+++-++. |++|+++|.|++..
T Consensus 3 lle~kq~~y~a~~a~----il~~isl~v~~Ge~iaitGPSG~GKStllk~va~Lis---p~~G~l~f~Ge~vs~~~pea~ 75 (223)
T COG4619 3 LLELKQVGYLAGDAK----ILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLIS---PTSGTLLFEGEDVSTLKPEAY 75 (223)
T ss_pred chHHHHHHhhcCCCe----eecceeeeecCCceEEEeCCCCccHHHHHHHHHhccC---CCCceEEEcCccccccChHHH
Confidence 566777766666666 9999999999999999999999999999999999999 99999999998743
Q ss_pred -CeEEEEecCCCCCCcccCCcccChHHHHHhcCCCCCccHHHHHHHHHHhhcC---CCccCCCCCCcCCCcchhhhhhcc
Q 021362 150 -DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ---GSVYAPSFDHGVGDPVEDDILVGL 225 (313)
Q Consensus 150 -~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~---~~~~~~~LSgG~kqRv~ia~al~~ 225 (313)
..++|+.|.+..+. -||++|+.|+...+. ...+...+..+|++++.. ..+.+.+|||||+||+++++.+..
T Consensus 76 Rq~VsY~~Q~paLfg---~tVeDNlifP~~~r~--rr~dr~aa~~llar~~l~~~~L~k~it~lSGGE~QriAliR~Lq~ 150 (223)
T COG4619 76 RQQVSYCAQTPALFG---DTVEDNLIFPWQIRN--RRPDRAAALDLLARFALPDSILTKNITELSGGEKQRIALIRNLQF 150 (223)
T ss_pred HHHHHHHHcCccccc---cchhhccccchHHhc--cCCChHHHHHHHHHcCCchhhhcchhhhccchHHHHHHHHHHhhc
Confidence 35899999977665 399999999876653 345788899999999854 466788999999999999999999
Q ss_pred CceEEEEcCCccccChhhHHHH----Hhhcc-c---eEEEEcChHHHHH
Q 021362 226 QHKVVIVDGNYLFLDGGVWKDV----SSMFD-E---KWFIEVDLDTAMQ 266 (313)
Q Consensus 226 ~ar~Li~d~~~lllDE~~~~~l----~~l~~-~---~i~vtHd~~~~~~ 266 (313)
-+.+|++|+.+.-|||...+.| ..+.. + .++||||.+.+.+
T Consensus 151 ~P~ILLLDE~TsALD~~nkr~ie~mi~~~v~~q~vAv~WiTHd~dqa~r 199 (223)
T COG4619 151 MPKILLLDEITSALDESNKRNIEEMIHRYVREQNVAVLWITHDKDQAIR 199 (223)
T ss_pred CCceEEecCchhhcChhhHHHHHHHHHHHhhhhceEEEEEecChHHHhh
Confidence 9999999999999999444443 44442 2 3699999999876
|
|
| >cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.1e-31 Score=235.58 Aligned_cols=167 Identities=16% Similarity=0.127 Sum_probs=132.6
Q ss_pred EEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCC-------C
Q 021362 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP-------P 149 (313)
Q Consensus 77 ~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~-------~ 149 (313)
.+.++|++|.|+.......+|+++||+|++|++++|+||||||||||+++|+|+++...|++|+|.++|.+. .
T Consensus 3 ~~~~~~~~~~~~~~~~~~~il~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~G~i~i~g~~~~~~~~~~~ 82 (202)
T cd03233 3 TLSWRNISFTTGKGRSKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIPYKEFAEKYP 82 (202)
T ss_pred eEEEEccEEEeccCCCCceeeeeEEEEECCCcEEEEECCCCCCHHHHHHHhcccCCCCCCcceEEEECCEECccchhhhc
Confidence 588999999997643344599999999999999999999999999999999999861124799999999653 2
Q ss_pred CeEEEEecCCCCCCcccCCcccChHHHHHhcCCCCCccHHHHHHHHHHhhcCCCccCCCCCCcCCCcchhhhhhccCceE
Q 021362 150 DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKV 229 (313)
Q Consensus 150 ~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~LSgG~kqRv~ia~al~~~ar~ 229 (313)
+.++|++|+...++ .+|+.+|+.+..... .+..+..||+||+||++||++++.++++
T Consensus 83 ~~i~~~~q~~~~~~--~~tv~~~l~~~~~~~---------------------~~~~~~~LS~Ge~qrl~laral~~~p~l 139 (202)
T cd03233 83 GEIIYVSEEDVHFP--TLTVRETLDFALRCK---------------------GNEFVRGISGGERKRVSIAEALVSRASV 139 (202)
T ss_pred ceEEEEecccccCC--CCcHHHHHhhhhhhc---------------------cccchhhCCHHHHHHHHHHHHHhhCCCE
Confidence 35899999865444 479999987653211 3456679999999999999999999999
Q ss_pred EEEcCCccccCh----hhHHHHHhhccc----eEEE-EcChHHHHH
Q 021362 230 VIVDGNYLFLDG----GVWKDVSSMFDE----KWFI-EVDLDTAMQ 266 (313)
Q Consensus 230 Li~d~~~lllDE----~~~~~l~~l~~~----~i~v-tHd~~~~~~ 266 (313)
|++|+|+..||. .+++.|+++.++ .+++ +|+.+++..
T Consensus 140 lllDEPt~~LD~~~~~~~~~~l~~~~~~~~~t~ii~~~h~~~~~~~ 185 (202)
T cd03233 140 LCWDNSTRGLDSSTALEILKCIRTMADVLKTTTFVSLYQASDEIYD 185 (202)
T ss_pred EEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEEcCCHHHHHH
Confidence 999999999999 566666666432 2454 455666655
|
PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.7e-32 Score=226.81 Aligned_cols=207 Identities=14% Similarity=0.137 Sum_probs=162.4
Q ss_pred ccEEEEccceEEccccc-----cccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCC--
Q 021362 75 IPVVEARCMDEVYDALA-----QRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK-- 147 (313)
Q Consensus 75 m~~l~~~~l~~~y~~~~-----~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~-- 147 (313)
|++++++|++|.|.... +...+++.|||++++|+.++|+|.||||||||.|+|+|+++ |++|+|.++|..
T Consensus 2 ~~LLeV~nLsKtF~~~~~lf~r~~~~AV~~vSFtL~~~QTlaiIG~NGSGKSTLakMlaGmi~---PTsG~il~n~~~L~ 78 (267)
T COG4167 2 ETLLEVRNLSKTFRYRTGLFRRQTVEAVKPVSFTLREGQTLAIIGENGSGKSTLAKMLAGMIE---PTSGEILINDHPLH 78 (267)
T ss_pred cchhhhhhhhhhhhhhhhhhhhhhhhcccceEEEecCCcEEEEEccCCCcHhHHHHHHhcccC---CCCceEEECCcccc
Confidence 56799999999996432 34558999999999999999999999999999999999999 999999999976
Q ss_pred ------CCCeEEEEecCCCCCCcccCCcccChHHHHHhcC-CCCCccHHHHHHHHHHhhc---CCCccCCCCCCcCCCcc
Q 021362 148 ------PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRG-APWTFNPLLLLNCLKNLRN---QGSVYAPSFDHGVGDPV 217 (313)
Q Consensus 148 ------~~~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~-~~~~~~~~~~~~~l~~l~~---~~~~~~~~LSgG~kqRv 217 (313)
+.+.|-++|||+...+++.+.+-+.+..+++... .......+++.+.|..+|+ ..+.++..||-||||||
T Consensus 79 ~~Dy~~R~k~IRMiFQDpnts~NPRl~iGqiLd~PL~l~T~~~~~~R~~~i~~TL~~VGL~Pdhan~~~~~la~~QKQRV 158 (267)
T COG4167 79 FGDYSFRSKRIRMIFQDPNTSLNPRLRIGQILDFPLRLNTDLEPEQRRKQIFETLRMVGLLPDHANYYPHMLAPGQKQRV 158 (267)
T ss_pred ccchHhhhhheeeeecCCccccChhhhhhhHhcchhhhcccCChHHHHHHHHHHHHHhccCccccccchhhcCchhHHHH
Confidence 3456899999998777777777777777765432 2333345678888899984 34567779999999999
Q ss_pred hhhhhhccCceEEEEcCCccccCh----hhHHHHHhhccc----eEEEEcChHHHHH---HHh----hcccccCCchHHH
Q 021362 218 EDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFDE----KWFIEVDLDTAMQ---RVL----KRHISTGKPPDVA 282 (313)
Q Consensus 218 ~ia~al~~~ar~Li~d~~~lllDE----~~~~~l~~l~~~----~i~vtHd~~~~~~---rv~----griv~~G~~~ev~ 282 (313)
++|+|+..++.++|.|+.+-.||- .+.....++.++ -|+|+.++..+.. .++ |.++++|.+.++.
T Consensus 159 aLARALIL~P~iIIaDeAl~~LD~smrsQl~NL~LeLQek~GiSyiYV~QhlG~iKHi~D~viVM~EG~vvE~G~t~~v~ 238 (267)
T COG4167 159 ALARALILRPKIIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHIGMIKHISDQVLVMHEGEVVERGSTADVL 238 (267)
T ss_pred HHHHHHhcCCcEEEehhhhhhccHHHHHHHHHHHHHHHHHhCceEEEEechhhHhhhhcccEEEEecCceeecCChhhhh
Confidence 997777777777777777777776 334444444333 3699999998876 444 9999999999986
Q ss_pred HH
Q 021362 283 KW 284 (313)
Q Consensus 283 ~~ 284 (313)
..
T Consensus 239 a~ 240 (267)
T COG4167 239 AS 240 (267)
T ss_pred cC
Confidence 54
|
|
| >PRK11819 putative ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.8e-31 Score=267.04 Aligned_cols=196 Identities=14% Similarity=0.058 Sum_probs=154.6
Q ss_pred cEEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCCCCeEEEE
Q 021362 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVL 155 (313)
Q Consensus 76 ~~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~~~~i~~v 155 (313)
++|+++|+++.|++.. +|+|+||+|++|+++||+||||||||||+++|+|+++ |++|+|.+++. ..++|+
T Consensus 323 ~~l~~~~l~~~~~~~~----~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~---p~~G~i~~~~~---~~i~~v 392 (556)
T PRK11819 323 KVIEAENLSKSFGDRL----LIDDLSFSLPPGGIVGIIGPNGAGKSTLFKMITGQEQ---PDSGTIKIGET---VKLAYV 392 (556)
T ss_pred eEEEEEeEEEEECCee----eecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCeEEEECCc---eEEEEE
Confidence 4799999999998766 9999999999999999999999999999999999999 99999998542 258999
Q ss_pred ecCCCCCCcccCCcccChHHHHHhcCCCCCccHHHHHHHHHHhhcC---CCccCCCCCCcCCCcchhhhhhccCceEEEE
Q 021362 156 PMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ---GSVYAPSFDHGVGDPVEDDILVGLQHKVVIV 232 (313)
Q Consensus 156 ~qd~~~~~~~~ltv~e~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~---~~~~~~~LSgG~kqRv~ia~al~~~ar~Li~ 232 (313)
+|+...++ +.+|+.+|+.+.....+... ......++++.++.. .++++.+||||||||++||++++.++++|++
T Consensus 393 ~q~~~~~~-~~~tv~e~l~~~~~~~~~~~--~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllL 469 (556)
T PRK11819 393 DQSRDALD-PNKTVWEEISGGLDIIKVGN--REIPSRAYVGRFNFKGGDQQKKVGVLSGGERNRLHLAKTLKQGGNVLLL 469 (556)
T ss_pred eCchhhcC-CCCCHHHHHHhhcccccccc--cHHHHHHHHHhCCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 99852222 35899999987643222221 123455788888853 3667889999999999999999999999999
Q ss_pred cCCccccCh----hhHHHHHhhccceEEEEcChHHHHH---HHh-----hccc-ccCCchHHHHH
Q 021362 233 DGNYLFLDG----GVWKDVSSMFDEKWFIEVDLDTAMQ---RVL-----KRHI-STGKPPDVAKW 284 (313)
Q Consensus 233 d~~~lllDE----~~~~~l~~l~~~~i~vtHd~~~~~~---rv~-----griv-~~G~~~ev~~~ 284 (313)
|+|+..||. .+++.|.++....|+||||++++.. |++ |+++ ..|..++...+
T Consensus 470 DEPt~~LD~~~~~~l~~~l~~~~~tvi~vtHd~~~~~~~~d~i~~l~~~g~~~~~~g~~~~~~~~ 534 (556)
T PRK11819 470 DEPTNDLDVETLRALEEALLEFPGCAVVISHDRWFLDRIATHILAFEGDSQVEWFEGNFQEYEED 534 (556)
T ss_pred cCCCCCCCHHHHHHHHHHHHhCCCeEEEEECCHHHHHHhCCEEEEEECCCeEEEecCCHHHHHHH
Confidence 999999999 4555555554445799999999877 544 3444 36766665544
|
|
| >cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters | Back alignment and domain information |
|---|
Probab=99.97 E-value=8.6e-32 Score=234.32 Aligned_cols=155 Identities=12% Similarity=0.079 Sum_probs=127.0
Q ss_pred EEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHh--cccCCCCceeecCCCCC----CC
Q 021362 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRI--NKIWPQKASSFDSQVKP----PD 150 (313)
Q Consensus 77 ~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~--~~~~p~~G~i~~~g~~~----~~ 150 (313)
.|+++|+++.|++..+...+|+++||++++|++++|+||||||||||+++|+|+. + |++|+|.++|.+. .+
T Consensus 3 ~l~~~~l~~~~~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~---~~~G~i~~~g~~~~~~~~~ 79 (192)
T cd03232 3 VLTWKNLNYTVPVKGGKRQLLNNISGYVKPGTLTALMGESGAGKTTLLDVLAGRKTAG---VITGEILINGRPLDKNFQR 79 (192)
T ss_pred EEEEeeeEEEecCCCCceEeEEccEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCcCC---CcceEEEECCEehHHHhhh
Confidence 5899999999975111123899999999999999999999999999999999975 4 7999999999763 35
Q ss_pred eEEEEecCCCCCCcccCCcccChHHHHHhcCCCCCccHHHHHHHHHHhhcCCCccCCCCCCcCCCcchhhhhhccCceEE
Q 021362 151 VATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVV 230 (313)
Q Consensus 151 ~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~LSgG~kqRv~ia~al~~~ar~L 230 (313)
.++|++|++..++ .+|+.+|+.+.... + +|||||+||++||++++.++++|
T Consensus 80 ~i~~~~q~~~~~~--~~tv~~~l~~~~~~----------------~-----------~LSgGe~qrv~la~al~~~p~vl 130 (192)
T cd03232 80 STGYVEQQDVHSP--NLTVREALRFSALL----------------R-----------GLSVEQRKRLTIGVELAAKPSIL 130 (192)
T ss_pred ceEEecccCcccc--CCcHHHHHHHHHHH----------------h-----------cCCHHHhHHHHHHHHHhcCCcEE
Confidence 6899999865443 47999998764211 0 89999999999999999999999
Q ss_pred EEcCCccccCh----hhHHHHHhhcc---ceEEEEcChHH
Q 021362 231 IVDGNYLFLDG----GVWKDVSSMFD---EKWFIEVDLDT 263 (313)
Q Consensus 231 i~d~~~lllDE----~~~~~l~~l~~---~~i~vtHd~~~ 263 (313)
++|+|+..||. .+++.|+++.+ ..+++|||++.
T Consensus 131 llDEP~~~LD~~~~~~l~~~l~~~~~~~~tiiivtH~~~~ 170 (192)
T cd03232 131 FLDEPTSGLDSQAAYNIVRFLKKLADSGQAILCTIHQPSA 170 (192)
T ss_pred EEeCCCcCCCHHHHHHHHHHHHHHHHcCCEEEEEEcCChH
Confidence 99999999999 45555555543 24799999984
|
PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.1e-31 Score=259.73 Aligned_cols=193 Identities=14% Similarity=0.143 Sum_probs=159.5
Q ss_pred EEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCC--------
Q 021362 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP-------- 148 (313)
Q Consensus 77 ~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~-------- 148 (313)
-++.+|+++.|++.. ++++|+||++++|+.++|+|+||||||||+++|+|+.+ |++|+|.+||.+.
T Consensus 320 ei~~~~l~~~y~~g~---~~l~~l~~t~~~g~~talvG~SGaGKSTLl~lL~G~~~---~~~G~I~vng~~l~~l~~~~~ 393 (559)
T COG4988 320 EISLENLSFRYPDGK---PALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLA---PTQGEIRVNGIDLRDLSPEAW 393 (559)
T ss_pred eeeecceEEecCCCC---cccCCceeEecCCcEEEEECCCCCCHHHHHHHHhCcCC---CCCceEEECCccccccCHHHH
Confidence 355679999998752 29999999999999999999999999999999999999 9999999999773
Q ss_pred CCeEEEEecCCCCCCcccCCcccChHHHHHhcCCCCCccHHHHHHHHHHhhc--------CCCccCC----CCCCcCCCc
Q 021362 149 PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN--------QGSVYAP----SFDHGVGDP 216 (313)
Q Consensus 149 ~~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~~~~~~~~~~~~l~~l~~--------~~~~~~~----~LSgG~kqR 216 (313)
++.+++|+|+++.+. -|++||+.++. +. ...+.+.++++..+. +.+..+. .|||||+||
T Consensus 394 ~k~i~~v~Q~p~lf~---gTireNi~l~~-----~~-~s~e~i~~al~~a~l~~~v~~p~GLdt~ige~G~~LSgGQ~QR 464 (559)
T COG4988 394 RKQISWVSQNPYLFA---GTIRENILLAR-----PD-ASDEEIIAALDQAGLLEFVPKPDGLDTVIGEGGAGLSGGQAQR 464 (559)
T ss_pred HhHeeeeCCCCcccc---ccHHHHhhccC-----Cc-CCHHHHHHHHHHhcHHHhhcCCCcccchhccCCCCCCHHHHHH
Confidence 356999999987665 49999997652 22 235566777776651 2343344 599999999
Q ss_pred chhhhhhccCceEEEEcCCccccCh----hhHHHHHhhccc--eEEEEcChHHHHH--HHh----hcccccCCchHHHHH
Q 021362 217 VEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFDE--KWFIEVDLDTAMQ--RVL----KRHISTGKPPDVAKW 284 (313)
Q Consensus 217 v~ia~al~~~ar~Li~d~~~lllDE----~~~~~l~~l~~~--~i~vtHd~~~~~~--rv~----griv~~G~~~ev~~~ 284 (313)
|++|||+..+++++++|||+.-||- .+.+.|.++.++ +++|||++..+.. +|+ ||+++.|.++++..+
T Consensus 465 laLARAll~~~~l~llDEpTA~LD~etE~~i~~~l~~l~~~ktvl~itHrl~~~~~~D~I~vld~G~l~~~g~~~~L~~~ 544 (559)
T COG4988 465 LALARALLSPASLLLLDEPTAHLDAETEQIILQALQELAKQKTVLVITHRLEDAADADRIVVLDNGRLVEQGTHEELSEK 544 (559)
T ss_pred HHHHHHhcCCCCEEEecCCccCCCHhHHHHHHHHHHHHHhCCeEEEEEcChHHHhcCCEEEEecCCceeccCCHHHHhhc
Confidence 9999999999999999999999998 456666666654 4799999999998 655 999999999998654
|
|
| >cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity | Back alignment and domain information |
|---|
Probab=99.97 E-value=8.5e-32 Score=230.54 Aligned_cols=146 Identities=21% Similarity=0.236 Sum_probs=125.4
Q ss_pred EEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCC-------CC
Q 021362 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP-------PD 150 (313)
Q Consensus 78 l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~-------~~ 150 (313)
|+++|+++.|++.. +|+++||++++||+++|+||||||||||+++|+|+++ |++|+|.++|.+. ..
T Consensus 1 l~~~~l~~~~~~~~----~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~---~~~G~i~~~g~~~~~~~~~~~~ 73 (173)
T cd03230 1 IEVRNLSKRYGKKT----ALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLK---PDSGEIKVLGKDIKKEPEEVKR 73 (173)
T ss_pred CEEEEEEEEECCee----eeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC---CCCeEEEECCEEcccchHhhhc
Confidence 46899999998655 9999999999999999999999999999999999999 9999999998653 24
Q ss_pred eEEEEecCCCCCCcccCCcccChHHHHHhcCCCCCccHHHHHHHHHHhhcCCCccCCCCCCcCCCcchhhhhhccCceEE
Q 021362 151 VATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVV 230 (313)
Q Consensus 151 ~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~LSgG~kqRv~ia~al~~~ar~L 230 (313)
.++|++|++..++ .+|+.+|+. ||+||+||++||++++.+++++
T Consensus 74 ~i~~~~q~~~~~~--~~tv~~~~~----------------------------------LS~G~~qrv~laral~~~p~il 117 (173)
T cd03230 74 RIGYLPEEPSLYE--NLTVRENLK----------------------------------LSGGMKQRLALAQALLHDPELL 117 (173)
T ss_pred cEEEEecCCcccc--CCcHHHHhh----------------------------------cCHHHHHHHHHHHHHHcCCCEE
Confidence 5899999965433 367777763 9999999999999999999999
Q ss_pred EEcCCccccCh----hhHHHHHhhccc---eEEEEcChHHHHH
Q 021362 231 IVDGNYLFLDG----GVWKDVSSMFDE---KWFIEVDLDTAMQ 266 (313)
Q Consensus 231 i~d~~~lllDE----~~~~~l~~l~~~---~i~vtHd~~~~~~ 266 (313)
++|+|+..||. .+++.|+++.++ .+++|||++++..
T Consensus 118 llDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~th~~~~~~~ 160 (173)
T cd03230 118 ILDEPTSGLDPESRREFWELLRELKKEGKTILLSSHILEEAER 160 (173)
T ss_pred EEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHH
Confidence 99999999999 556666666433 4799999998764
|
In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.4e-32 Score=279.94 Aligned_cols=195 Identities=14% Similarity=0.143 Sum_probs=156.6
Q ss_pred EEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCCC-------
Q 021362 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPP------- 149 (313)
Q Consensus 77 ~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~~------- 149 (313)
.|+++||+++|..++ ++.+|+|+||.|++|+.++|+|||||||||++++|.+++. |++|+|.++|.+..
T Consensus 350 ~ief~nV~FsYPsRp-dv~Il~g~sl~i~~G~~valVG~SGsGKST~i~LL~Rfyd---P~~G~V~idG~di~~~~~~~l 425 (1228)
T KOG0055|consen 350 EIEFRNVCFSYPSRP-DVKILKGVSLKIPSGQTVALVGPSGSGKSTLIQLLARFYD---PTSGEVLIDGEDIRNLNLKWL 425 (1228)
T ss_pred ceEEEEEEecCCCCC-cchhhCCeEEEeCCCCEEEEECCCCCCHHHHHHHHHHhcC---CCCceEEEcCccchhcchHHH
Confidence 599999999999875 6669999999999999999999999999999999999999 99999999998743
Q ss_pred -CeEEEEecCCCCCCcccCCcccChHHHHHhcCCCCCccHHHHHHHHHHhh---------cCC----CccCCCCCCcCCC
Q 021362 150 -DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLR---------NQG----SVYAPSFDHGVGD 215 (313)
Q Consensus 150 -~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~~~~~~~~~~~~l~~l~---------~~~----~~~~~~LSgG~kq 215 (313)
..+|+|+|+|..+. .|++||+.++ .+.. ..+++.++++..+ .+. ...-.+|||||||
T Consensus 426 r~~iglV~QePvlF~---~tI~eNI~~G-----~~da-t~~~i~~a~k~ana~~fi~~lp~g~~T~vge~g~qLSGGQKQ 496 (1228)
T KOG0055|consen 426 RSQIGLVSQEPVLFA---TTIRENIRYG-----KPDA-TREEIEEAAKAANAHDFILKLPDGYDTLVGERGVQLSGGQKQ 496 (1228)
T ss_pred HhhcCeeeechhhhc---ccHHHHHhcC-----CCcc-cHHHHHHHHHHccHHHHHHhhHHhhcccccCCCCCCChHHHH
Confidence 46999999985443 7999999764 3321 2334444433222 121 2234489999999
Q ss_pred cchhhhhhccCceEEEEcCCccccChhhHHHHHhhcc------ceEEEEcChHHHHH--HHh----hcccccCCchHHHH
Q 021362 216 PVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFD------EKWFIEVDLDTAMQ--RVL----KRHISTGKPPDVAK 283 (313)
Q Consensus 216 Rv~ia~al~~~ar~Li~d~~~lllDE~~~~~l~~l~~------~~i~vtHd~~~~~~--rv~----griv~~G~~~ev~~ 283 (313)
|++||||++.+|++|++|+++..||.+--+.+.+..+ ..|+|+|++.++.. +++ |++++.|..+|++.
T Consensus 497 RIAIARalv~~P~ILLLDEaTSaLD~~se~~Vq~ALd~~~~grTTivVaHRLStIrnaD~I~v~~~G~IvE~G~h~ELi~ 576 (1228)
T KOG0055|consen 497 RIAIARALVRNPKILLLDEATSALDAESERVVQEALDKASKGRTTIVVAHRLSTIRNADKIAVMEEGKIVEQGTHDELIA 576 (1228)
T ss_pred HHHHHHHHHhCCCEEEecCcccccCHHHHHHHHHHHHHhhcCCeEEEEeeehhhhhccCEEEEEECCEEEEecCHHHHHh
Confidence 9999999999999999999999999944444443333 25899999999998 544 99999999999976
Q ss_pred H
Q 021362 284 W 284 (313)
Q Consensus 284 ~ 284 (313)
.
T Consensus 577 ~ 577 (1228)
T KOG0055|consen 577 L 577 (1228)
T ss_pred c
Confidence 5
|
|
| >PRK10762 D-ribose transporter ATP binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.8e-32 Score=267.50 Aligned_cols=194 Identities=12% Similarity=0.078 Sum_probs=154.7
Q ss_pred cEEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCCC------
Q 021362 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPP------ 149 (313)
Q Consensus 76 ~~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~~------ 149 (313)
++|+++|+++ . +|+++||+|.+||+++|+||||||||||+++|+|+++ |++|+|.++|++..
T Consensus 256 ~~l~~~~l~~-----~----~l~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~G~~~---p~~G~I~~~g~~i~~~~~~~ 323 (501)
T PRK10762 256 VRLKVDNLSG-----P----GVNDVSFTLRKGEILGVSGLMGAGRTELMKVLYGALP---RTSGYVTLDGHEVVTRSPQD 323 (501)
T ss_pred cEEEEeCccc-----C----CcccceEEEcCCcEEEEecCCCCCHHHHHHHHhCCCC---CCceEEEECCEECCCCCHHH
Confidence 4799999984 3 7999999999999999999999999999999999999 99999999986531
Q ss_pred ---CeEEEEecCCC--CCCcccCCcccChHHHHHh-c----C-CCCCccHHHHHHHHHHhhcC---CCccCCCCCCcCCC
Q 021362 150 ---DVATVLPMDGF--HLYLSQLDAMEDPKEAHAR-R----G-APWTFNPLLLLNCLKNLRNQ---GSVYAPSFDHGVGD 215 (313)
Q Consensus 150 ---~~i~~v~qd~~--~~~~~~ltv~e~~~~~~~~-~----~-~~~~~~~~~~~~~l~~l~~~---~~~~~~~LSgG~kq 215 (313)
..++|++|++. .++ +.+|+.+|+.+.... . + .......+++.++++.++.. .++++.+|||||||
T Consensus 324 ~~~~~i~~v~q~~~~~~~~-~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGekq 402 (501)
T PRK10762 324 GLANGIVYISEDRKRDGLV-LGMSVKENMSLTALRYFSRAGGSLKHADEQQAVSDFIRLFNIKTPSMEQAIGLLSGGNQQ 402 (501)
T ss_pred HHHCCCEEecCccccCCCc-CCCcHHHHhhhhhhhhhcccccccCHHHHHHHHHHHHHhcCCCCCCccCchhhCCHHHHH
Confidence 34899999952 222 248999999874321 1 1 11112245678888988852 46677899999999
Q ss_pred cchhhhhhccCceEEEEcCCccccCh----hhHHHHHhhccc---eEEEEcChHHHHH---HHh----hcccccCCchHH
Q 021362 216 PVEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFDE---KWFIEVDLDTAMQ---RVL----KRHISTGKPPDV 281 (313)
Q Consensus 216 Rv~ia~al~~~ar~Li~d~~~lllDE----~~~~~l~~l~~~---~i~vtHd~~~~~~---rv~----griv~~G~~~ev 281 (313)
|++||++++.++++|++|+|+..||. .+++.|+++.++ .|++|||++++.. |++ |+++..|+++++
T Consensus 403 rv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~~~~~~~ 482 (501)
T PRK10762 403 KVAIARGLMTRPKVLILDEPTRGVDVGAKKEIYQLINQFKAEGLSIILVSSEMPEVLGMSDRILVMHEGRISGEFTREQA 482 (501)
T ss_pred HHHHHHHHhhCCCEEEEcCCCCCCCHhHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHhhCCEEEEEECCEEEEEeccccC
Confidence 99999999999999999999999999 556666666442 4799999999987 554 888888887766
Q ss_pred H
Q 021362 282 A 282 (313)
Q Consensus 282 ~ 282 (313)
.
T Consensus 483 ~ 483 (501)
T PRK10762 483 T 483 (501)
T ss_pred C
Confidence 3
|
|
| >cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos) | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.4e-31 Score=230.98 Aligned_cols=149 Identities=19% Similarity=0.194 Sum_probs=124.7
Q ss_pred EEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCC--------
Q 021362 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP-------- 148 (313)
Q Consensus 77 ~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~-------- 148 (313)
+|+++|+++.| +|+++||++++|++++|+||||||||||+++|+|+++ |++|+|.++|.+.
T Consensus 4 ~l~~~~l~~~~--------~l~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~~~~~~~~~~ 72 (182)
T cd03215 4 VLEVRGLSVKG--------AVRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRP---PASGEITLDGKPVTRRSPRDA 72 (182)
T ss_pred EEEEeccEEEe--------eecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC---CCCceEEECCEECCccCHHHH
Confidence 69999999998 6899999999999999999999999999999999999 9999999999653
Q ss_pred -CCeEEEEecCCC-CCCcccCCcccChHHHHHhcCCCCCccHHHHHHHHHHhhcCCCccCCCCCCcCCCcchhhhhhccC
Q 021362 149 -PDVATVLPMDGF-HLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQ 226 (313)
Q Consensus 149 -~~~i~~v~qd~~-~~~~~~ltv~e~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~LSgG~kqRv~ia~al~~~ 226 (313)
.+.++|++|+.. ....+.+|+.||+.+... ||+||+||++||++++.+
T Consensus 73 ~~~~i~~~~q~~~~~~~~~~~t~~e~l~~~~~------------------------------LS~G~~qrl~la~al~~~ 122 (182)
T cd03215 73 IRAGIAYVPEDRKREGLVLDLSVAENIALSSL------------------------------LSGGNQQKVVLARWLARD 122 (182)
T ss_pred HhCCeEEecCCcccCcccCCCcHHHHHHHHhh------------------------------cCHHHHHHHHHHHHHccC
Confidence 235899999842 112224788888765421 999999999999999999
Q ss_pred ceEEEEcCCccccCh----hhHHHHHhhcc---ceEEEEcChHHHHH
Q 021362 227 HKVVIVDGNYLFLDG----GVWKDVSSMFD---EKWFIEVDLDTAMQ 266 (313)
Q Consensus 227 ar~Li~d~~~lllDE----~~~~~l~~l~~---~~i~vtHd~~~~~~ 266 (313)
+++|++|+|+..||. .+++.|+++.+ ..+++|||++++..
T Consensus 123 p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~ 169 (182)
T cd03215 123 PRVLILDEPTRGVDVGAKAEIYRLIRELADAGKAVLLISSELDELLG 169 (182)
T ss_pred CCEEEECCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHH
Confidence 999999999999999 45555555533 24799999988765
|
The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. |
| >cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.7e-31 Score=227.24 Aligned_cols=146 Identities=13% Similarity=0.021 Sum_probs=123.3
Q ss_pred EEEccceEEccc-cccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCCCCeEEEEe
Q 021362 78 VEARCMDEVYDA-LAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLP 156 (313)
Q Consensus 78 l~~~~l~~~y~~-~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~~~~i~~v~ 156 (313)
|+++|+++.|++ .. +|+++||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|. +.++|++
T Consensus 1 i~~~~~~~~~~~~~~----~l~~i~l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~~~---~~i~~~~ 70 (166)
T cd03223 1 IELENLSLATPDGRV----LLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWP---WGSGRIGMPEG---EDLLFLP 70 (166)
T ss_pred CEEEEEEEEcCCCCe----eeecCeEEECCCCEEEEECCCCCCHHHHHHHHhcCCC---CCCceEEECCC---ceEEEEC
Confidence 468999999964 34 8999999999999999999999999999999999999 99999999874 5699999
Q ss_pred cCCCCCCcccCCcccChHHHHHhcCCCCCccHHHHHHHHHHhhcCCCccCCCCCCcCCCcchhhhhhccCceEEEEcCCc
Q 021362 157 MDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNY 236 (313)
Q Consensus 157 qd~~~~~~~~ltv~e~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~LSgG~kqRv~ia~al~~~ar~Li~d~~~ 236 (313)
|++.. + ..|+.||+.+. ...+||+||+||+++|++++.+++++++|+|+
T Consensus 71 q~~~~-~--~~tv~~nl~~~----------------------------~~~~LS~G~~~rv~laral~~~p~~lllDEPt 119 (166)
T cd03223 71 QRPYL-P--LGTLREQLIYP----------------------------WDDVLSGGEQQRLAFARLLLHKPKFVFLDEAT 119 (166)
T ss_pred CCCcc-c--cccHHHHhhcc----------------------------CCCCCCHHHHHHHHHHHHHHcCCCEEEEECCc
Confidence 99653 3 36888887542 34699999999999999999999999999999
Q ss_pred cccChhh----HHHHHhhccceEEEEcChHHH
Q 021362 237 LFLDGGV----WKDVSSMFDEKWFIEVDLDTA 264 (313)
Q Consensus 237 lllDE~~----~~~l~~l~~~~i~vtHd~~~~ 264 (313)
..||... .+.|.++....+++|||++..
T Consensus 120 ~~LD~~~~~~l~~~l~~~~~tiiivsh~~~~~ 151 (166)
T cd03223 120 SALDEESEDRLYQLLKELGITVISVGHRPSLW 151 (166)
T ss_pred cccCHHHHHHHHHHHHHhCCEEEEEeCChhHH
Confidence 9999944 444444433357999998764
|
The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt |
| >PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.2e-31 Score=270.18 Aligned_cols=191 Identities=13% Similarity=0.121 Sum_probs=155.8
Q ss_pred EEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCC--------
Q 021362 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP-------- 148 (313)
Q Consensus 77 ~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~-------- 148 (313)
-|+++|+++.|++. ..+|+|+||++++||.++|+|+||||||||+++|+|+++ |++|+|.++|.+.
T Consensus 340 ~i~~~~v~f~y~~~---~~il~~i~l~i~~Ge~iaIvG~SGsGKSTLl~lL~gl~~---p~~G~I~idg~~i~~~~~~~l 413 (592)
T PRK10790 340 RIDIDNVSFAYRDD---NLVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYP---LTEGEIRLDGRPLSSLSHSVL 413 (592)
T ss_pred eEEEEEEEEEeCCC---CceeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccC---CCCceEEECCEEhhhCCHHHH
Confidence 48999999999742 139999999999999999999999999999999999999 9999999999763
Q ss_pred CCeEEEEecCCCCCCcccCCcccChHHHHHhcCCCCCccHHHHHHHHHHhhc---------CCCc----cCCCCCCcCCC
Q 021362 149 PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN---------QGSV----YAPSFDHGVGD 215 (313)
Q Consensus 149 ~~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~~~~~~~~~~~~l~~l~~---------~~~~----~~~~LSgG~kq 215 (313)
++.++|++||++.+. -|+++|+.++. ..+.+++.++++.++. +.+. ....|||||||
T Consensus 414 ~~~i~~v~Q~~~lF~---~Ti~~NI~~~~-------~~~d~~i~~a~~~~gl~~~i~~lp~Gldt~i~e~g~~LSGGqrQ 483 (592)
T PRK10790 414 RQGVAMVQQDPVVLA---DTFLANVTLGR-------DISEEQVWQALETVQLAELARSLPDGLYTPLGEQGNNLSVGQKQ 483 (592)
T ss_pred HhheEEEccCCcccc---chHHHHHHhCC-------CCCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHH
Confidence 356999999977654 49999997742 1234556666666551 2222 23479999999
Q ss_pred cchhhhhhccCceEEEEcCCccccCh----hhHHHHHhhcc--ceEEEEcChHHHHH--HHh----hcccccCCchHHHH
Q 021362 216 PVEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFD--EKWFIEVDLDTAMQ--RVL----KRHISTGKPPDVAK 283 (313)
Q Consensus 216 Rv~ia~al~~~ar~Li~d~~~lllDE----~~~~~l~~l~~--~~i~vtHd~~~~~~--rv~----griv~~G~~~ev~~ 283 (313)
|++||||++.++++|++|+|+.-||+ .+.+.|.++.. ..|+|||+++.... +++ |++++.|+.+++.+
T Consensus 484 RialARaLl~~~~illlDEpts~LD~~t~~~i~~~l~~~~~~~tvIivtHr~~~l~~~D~ii~l~~G~i~~~G~~~~L~~ 563 (592)
T PRK10790 484 LLALARVLVQTPQILILDEATANIDSGTEQAIQQALAAVREHTTLVVIAHRLSTIVEADTILVLHRGQAVEQGTHQQLLA 563 (592)
T ss_pred HHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhCCCEEEEEecchHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 99999999999999999999999999 45555555533 35799999988877 665 99999999999864
|
|
| >cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment | Back alignment and domain information |
|---|
Probab=99.97 E-value=1e-31 Score=231.05 Aligned_cols=148 Identities=21% Similarity=0.227 Sum_probs=125.0
Q ss_pred EEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCC---------
Q 021362 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP--------- 148 (313)
Q Consensus 78 l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~--------- 148 (313)
|+++|+++.|++.. +++++||++++|++++|+||||||||||+++|+|+++ |++|+|.++|.+.
T Consensus 1 i~~~~l~~~~~~~~----~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~~~~~~~~~~~ 73 (178)
T cd03229 1 LELKNVSKRYGQKT----VLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEE---PDSGSILIDGEDLTDLEDELPP 73 (178)
T ss_pred CEEEEEEEEECCeE----EEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCceEEEECCEEccccchhHHH
Confidence 46899999998765 9999999999999999999999999999999999998 9999999998542
Q ss_pred -CCeEEEEecCCCCCCcccCCcccChHHHHHhcCCCCCccHHHHHHHHHHhhcCCCccCCCCCCcCCCcchhhhhhccCc
Q 021362 149 -PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQH 227 (313)
Q Consensus 149 -~~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~LSgG~kqRv~ia~al~~~a 227 (313)
.+.++|++|++..+. .+|+.||+.+. ||+||+||++||++++.++
T Consensus 74 ~~~~i~~~~q~~~~~~--~~t~~~~l~~~--------------------------------lS~G~~qr~~la~al~~~p 119 (178)
T cd03229 74 LRRRIGMVFQDFALFP--HLTVLENIALG--------------------------------LSGGQQQRVALARALAMDP 119 (178)
T ss_pred HhhcEEEEecCCccCC--CCCHHHheeec--------------------------------CCHHHHHHHHHHHHHHCCC
Confidence 235899999865433 36887776432 9999999999999999999
Q ss_pred eEEEEcCCccccCh----hhHHHHHhhccc----eEEEEcChHHHHH
Q 021362 228 KVVIVDGNYLFLDG----GVWKDVSSMFDE----KWFIEVDLDTAMQ 266 (313)
Q Consensus 228 r~Li~d~~~lllDE----~~~~~l~~l~~~----~i~vtHd~~~~~~ 266 (313)
+++++|+|+..||. .+++.|+++.++ .+++|||++++..
T Consensus 120 ~llilDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~ 166 (178)
T cd03229 120 DVLLLDEPTSALDPITRREVRALLKSLQAQLGITVVLVTHDLDEAAR 166 (178)
T ss_pred CEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHH
Confidence 99999999999999 455555555432 3699999998764
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.3e-31 Score=275.00 Aligned_cols=195 Identities=15% Similarity=0.120 Sum_probs=155.9
Q ss_pred EEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCC--------
Q 021362 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP-------- 148 (313)
Q Consensus 77 ~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~-------- 148 (313)
.|+++||++.|++.. +..+|+|+||+|++||.++|+||||||||||+++|.|+++ |++|+|.++|++.
T Consensus 478 ~I~~~nVsf~Y~~~~-~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~---p~~G~I~idg~~i~~~~~~~l 553 (711)
T TIGR00958 478 LIEFQDVSFSYPNRP-DVPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQ---PTGGQVLLDGVPLVQYDHHYL 553 (711)
T ss_pred eEEEEEEEEECCCCC-CCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHHhccC---CCCCEEEECCEEHHhcCHHHH
Confidence 599999999997532 1239999999999999999999999999999999999999 9999999999763
Q ss_pred CCeEEEEecCCCCCCcccCCcccChHHHHHhcCCCCCccHHHHHHHHHHhh---------cCCCc----cCCCCCCcCCC
Q 021362 149 PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLR---------NQGSV----YAPSFDHGVGD 215 (313)
Q Consensus 149 ~~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~~~~~~~~~~~~l~~l~---------~~~~~----~~~~LSgG~kq 215 (313)
.+.++|++|+++.+. .|++||+.++. +. ...+++.++++..+ .+.+. ...+|||||||
T Consensus 554 r~~i~~v~Q~~~lF~---gTIreNI~~g~-----~~-~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQkQ 624 (711)
T TIGR00958 554 HRQVALVGQEPVLFS---GSVRENIAYGL-----TD-TPDEEIMAAAKAANAHDFIMEFPNGYDTEVGEKGSQLSGGQKQ 624 (711)
T ss_pred HhhceEEecCccccc---cCHHHHHhcCC-----CC-CCHHHHHHHHHHcCCHHHHHhCCCccCCcccCCCCcCCHHHHH
Confidence 346999999987654 59999997642 21 22445555555544 12222 23489999999
Q ss_pred cchhhhhhccCceEEEEcCCccccChhhHHHHHhhc---c-ceEEEEcChHHHHH--HHh----hcccccCCchHHHHH
Q 021362 216 PVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMF---D-EKWFIEVDLDTAMQ--RVL----KRHISTGKPPDVAKW 284 (313)
Q Consensus 216 Rv~ia~al~~~ar~Li~d~~~lllDE~~~~~l~~l~---~-~~i~vtHd~~~~~~--rv~----griv~~G~~~ev~~~ 284 (313)
|++||||+.++++++++|+++.-||.+..+.+.+.. + ..|+|||+++.+.. +++ |++++.|+.+|+.+.
T Consensus 625 RlalARALl~~p~ILILDEpTSaLD~~te~~i~~~~~~~~~TvIiItHrl~~i~~aD~IivL~~G~ive~Gt~~eL~~~ 703 (711)
T TIGR00958 625 RIAIARALVRKPRVLILDEATSALDAECEQLLQESRSRASRTVLLIAHRLSTVERADQILVLKKGSVVEMGTHKQLMED 703 (711)
T ss_pred HHHHHHHHhcCCCEEEEEccccccCHHHHHHHHHhhccCCCeEEEEeccHHHHHhCCEEEEEECCEEEEeeCHHHHHhC
Confidence 999999999999999999999999996655555422 1 24799999998877 655 999999999998654
|
|
| >PLN03211 ABC transporter G-25; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.7e-31 Score=270.91 Aligned_cols=195 Identities=17% Similarity=0.147 Sum_probs=156.4
Q ss_pred EEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCC--CceeecCCCCC----CCeE
Q 021362 79 EARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQ--KASSFDSQVKP----PDVA 152 (313)
Q Consensus 79 ~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~--~G~i~~~g~~~----~~~i 152 (313)
.++|+++.|+++. +|+|+||++++||+++|+||||||||||+++|+|+++ |+ +|+|.++|++. .+.+
T Consensus 70 ~~~~l~~~~~~~~----iL~~vs~~i~~Ge~~aI~GpnGaGKSTLL~iLaG~~~---~~~~sG~I~inG~~~~~~~~~~i 142 (659)
T PLN03211 70 KISDETRQIQERT----ILNGVTGMASPGEILAVLGPSGSGKSTLLNALAGRIQ---GNNFTGTILANNRKPTKQILKRT 142 (659)
T ss_pred ccccccccCCCCe----eeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCC---CCceeEEEEECCEECchhhccce
Confidence 3567888998776 9999999999999999999999999999999999997 75 89999999753 3458
Q ss_pred EEEecCCCCCCcccCCcccChHHHHHhcCCCC----CccHHHHHHHHHHhhcCC-------CccCCCCCCcCCCcchhhh
Q 021362 153 TVLPMDGFHLYLSQLDAMEDPKEAHARRGAPW----TFNPLLLLNCLKNLRNQG-------SVYAPSFDHGVGDPVEDDI 221 (313)
Q Consensus 153 ~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~~----~~~~~~~~~~l~~l~~~~-------~~~~~~LSgG~kqRv~ia~ 221 (313)
+|++|++..+. .+|++||+.+....+ .+. ++..+++.++++.++... +.....||||||||++||+
T Consensus 143 ~yv~Q~~~l~~--~lTV~E~l~~~a~~~-~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSgGerqRv~ia~ 219 (659)
T PLN03211 143 GFVTQDDILYP--HLTVRETLVFCSLLR-LPKSLTKQEKILVAESVISELGLTKCENTIIGNSFIRGISGGERKRVSIAH 219 (659)
T ss_pred EEECcccccCC--cCCHHHHHHHHHHhC-CCCCCCHHHHHHHHHHHHHHcCChhhcCceeCCCCCCCcChhhhhHHHHHH
Confidence 99999976544 489999999875433 221 123345778888887432 3346689999999999999
Q ss_pred hhccCceEEEEcCCccccCh----hhHHHHHhhccc---eEEEEcChHH-HHH---HHh----hcccccCCchHHHH
Q 021362 222 LVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFDE---KWFIEVDLDT-AMQ---RVL----KRHISTGKPPDVAK 283 (313)
Q Consensus 222 al~~~ar~Li~d~~~lllDE----~~~~~l~~l~~~---~i~vtHd~~~-~~~---rv~----griv~~G~~~ev~~ 283 (313)
+++.++++|++|+|+..||. .+.+.|+++.++ +++++|+++. +.. +++ |+++..|+++++..
T Consensus 220 aL~~~P~iLlLDEPtsgLD~~~~~~l~~~L~~l~~~g~TvI~~sH~~~~~i~~~~D~iilL~~G~iv~~G~~~~~~~ 296 (659)
T PLN03211 220 EMLINPSLLILDEPTSGLDATAAYRLVLTLGSLAQKGKTIVTSMHQPSSRVYQMFDSVLVLSEGRCLFFGKGSDAMA 296 (659)
T ss_pred HHHhCCCEEEEeCCCCCcCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhceEEEecCCcEEEECCHHHHHH
Confidence 99999999999999999999 566666665432 4799999974 443 554 99999999988754
|
|
| >TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.4e-31 Score=274.93 Aligned_cols=193 Identities=15% Similarity=0.135 Sum_probs=154.5
Q ss_pred EEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCC--------
Q 021362 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP-------- 148 (313)
Q Consensus 77 ~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~-------- 148 (313)
-|+++|+++.|+.. ..+|+|+||+|++|+.++|+||||||||||+++|+|++. |++|+|.++|.+.
T Consensus 473 ~I~~~~vsf~y~~~---~~iL~~isl~i~~G~~vaIvG~SGsGKSTLlklL~gl~~---p~~G~I~idg~~i~~~~~~~l 546 (708)
T TIGR01193 473 DIVINDVSYSYGYG---SNILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQ---ARSGEILLNGFSLKDIDRHTL 546 (708)
T ss_pred cEEEEEEEEEcCCC---CcceeceeEEECCCCEEEEECCCCCCHHHHHHHHhccCC---CCCcEEEECCEEHHHcCHHHH
Confidence 49999999999742 139999999999999999999999999999999999999 9999999999763
Q ss_pred CCeEEEEecCCCCCCcccCCcccChHHHHHhcCCCCCccHHHHHHHHHHhh---------cCCCc----cCCCCCCcCCC
Q 021362 149 PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLR---------NQGSV----YAPSFDHGVGD 215 (313)
Q Consensus 149 ~~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~~~~~~~~~~~~l~~l~---------~~~~~----~~~~LSgG~kq 215 (313)
++.++|++|+++.+. -|++||+.++.. + ..+.+++.++++..+ .+.+. ....|||||||
T Consensus 547 r~~i~~v~Q~~~lf~---gTI~eNi~l~~~----~-~~~~~~i~~a~~~a~l~~~i~~lp~gldt~i~e~G~~LSgGQrQ 618 (708)
T TIGR01193 547 RQFINYLPQEPYIFS---GSILENLLLGAK----E-NVSQDEIWAACEIAEIKDDIENMPLGYQTELSEEGSSISGGQKQ 618 (708)
T ss_pred HHheEEEecCceehh---HHHHHHHhccCC----C-CCCHHHHHHHHHHhCCHHHHHhcccccCcEecCCCCCCCHHHHH
Confidence 346999999977554 499999976421 1 223445555555443 12222 23489999999
Q ss_pred cchhhhhhccCceEEEEcCCccccCh----hhHHHHHhhccc-eEEEEcChHHHHH--HHh----hcccccCCchHHHH
Q 021362 216 PVEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFDE-KWFIEVDLDTAMQ--RVL----KRHISTGKPPDVAK 283 (313)
Q Consensus 216 Rv~ia~al~~~ar~Li~d~~~lllDE----~~~~~l~~l~~~-~i~vtHd~~~~~~--rv~----griv~~G~~~ev~~ 283 (313)
|++||||+..++++|++|+++.-||. .+.+.|.++.+. .|+|||+++.+.. |++ |++++.|+.+++..
T Consensus 619 RialARall~~p~iliLDE~Ts~LD~~te~~i~~~L~~~~~~T~IiitHr~~~~~~~D~i~~l~~G~i~~~G~~~~L~~ 697 (708)
T TIGR01193 619 RIALARALLTDSKVLILDESTSNLDTITEKKIVNNLLNLQDKTIIFVAHRLSVAKQSDKIIVLDHGKIIEQGSHDELLD 697 (708)
T ss_pred HHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHHhcCCEEEEEecchHHHHcCCEEEEEECCEEEEECCHHHHHh
Confidence 99999999999999999999999999 455556554323 4799999998876 665 99999999988865
|
This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc. |
| >cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.3e-31 Score=229.41 Aligned_cols=145 Identities=16% Similarity=0.166 Sum_probs=121.8
Q ss_pred EEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCC--------C
Q 021362 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP--------P 149 (313)
Q Consensus 78 l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~--------~ 149 (313)
|+++|+++.|++.. ..+++++||++++||+++|+||||||||||+++|+|+++ |++|+|.++|.+. .
T Consensus 1 i~~~~l~~~~~~~~--~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~---~~~G~i~~~g~~~~~~~~~~~~ 75 (173)
T cd03246 1 LEVENVSFRYPGAE--PPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLR---PTSGRVRLDGADISQWDPNELG 75 (173)
T ss_pred CEEEEEEEEcCCCC--CcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHHhccC---CCCCeEEECCEEcccCCHHHHH
Confidence 46899999997521 228999999999999999999999999999999999999 9999999998653 2
Q ss_pred CeEEEEecCCCCCCcccCCcccChHHHHHhcCCCCCccHHHHHHHHHHhhcCCCccCCCCCCcCCCcchhhhhhccCceE
Q 021362 150 DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKV 229 (313)
Q Consensus 150 ~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~LSgG~kqRv~ia~al~~~ar~ 229 (313)
..++|++|++.. +. .|+.||+ |||||+||++||++++.++++
T Consensus 76 ~~i~~~~q~~~~-~~--~tv~~~l-----------------------------------LS~G~~qrv~la~al~~~p~~ 117 (173)
T cd03246 76 DHVGYLPQDDEL-FS--GSIAENI-----------------------------------LSGGQRQRLGLARALYGNPRI 117 (173)
T ss_pred hheEEECCCCcc-cc--CcHHHHC-----------------------------------cCHHHHHHHHHHHHHhcCCCE
Confidence 458999998643 32 3777765 999999999999999999999
Q ss_pred EEEcCCccccCh----hhHHHHHhhcc---ceEEEEcChHHHH
Q 021362 230 VIVDGNYLFLDG----GVWKDVSSMFD---EKWFIEVDLDTAM 265 (313)
Q Consensus 230 Li~d~~~lllDE----~~~~~l~~l~~---~~i~vtHd~~~~~ 265 (313)
|++|+|+..||. .+++.|+++.+ ..+++|||++++.
T Consensus 118 lllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~ 160 (173)
T cd03246 118 LVLDEPNSHLDVEGERALNQAIAALKAAGATRIVIAHRPETLA 160 (173)
T ss_pred EEEECCccccCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHH
Confidence 999999999999 45555555543 2479999998763
|
They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra |
| >PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=7.3e-32 Score=266.79 Aligned_cols=198 Identities=13% Similarity=0.106 Sum_probs=154.9
Q ss_pred cEEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCCC------
Q 021362 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPP------ 149 (313)
Q Consensus 76 ~~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~~------ 149 (313)
+++++++++.. . +++|+||+|++||+++|+||||||||||+|+|+|+++ |++|+|+++|++..
T Consensus 256 ~~l~~~~~~~~----~----~l~~isl~i~~Ge~~~iiG~NGsGKSTLlk~l~G~~~---p~~G~i~~~g~~~~~~~~~~ 324 (501)
T PRK11288 256 VRLRLDGLKGP----G----LREPISFSVRAGEIVGLFGLVGAGRSELMKLLYGATR---RTAGQVYLDGKPIDIRSPRD 324 (501)
T ss_pred cEEEEeccccC----C----cccceeEEEeCCcEEEEEcCCCCCHHHHHHHHcCCCc---CCCceEEECCEECCCCCHHH
Confidence 36899999732 3 8999999999999999999999999999999999999 99999999986532
Q ss_pred ---CeEEEEecCCC--CCCcccCCcccChHHHHHhcCC------CCCccHHHHHHHHHHhhc---CCCccCCCCCCcCCC
Q 021362 150 ---DVATVLPMDGF--HLYLSQLDAMEDPKEAHARRGA------PWTFNPLLLLNCLKNLRN---QGSVYAPSFDHGVGD 215 (313)
Q Consensus 150 ---~~i~~v~qd~~--~~~~~~ltv~e~~~~~~~~~~~------~~~~~~~~~~~~l~~l~~---~~~~~~~~LSgG~kq 215 (313)
..++|++|++. .++ +.+|+.||+.+....... ......+.+.++++.++. ..++++.+|||||||
T Consensus 325 ~~~~~i~~~~q~~~~~~~~-~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~q 403 (501)
T PRK11288 325 AIRAGIMLCPEDRKAEGII-PVHSVADNINISARRHHLRAGCLINNRWEAENADRFIRSLNIKTPSREQLIMNLSGGNQQ 403 (501)
T ss_pred HHhCCCEEcCcCHhhCCCc-CCCCHHHHhccccchhhcccccccChHHHHHHHHHHHHhcCcccCCccCccccCCHHHHH
Confidence 35899999852 122 248999998764321110 111223457788888885 246678899999999
Q ss_pred cchhhhhhccCceEEEEcCCccccCh----hhHHHHHhhccc---eEEEEcChHHHHH---HHh----hcccccCCchHH
Q 021362 216 PVEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFDE---KWFIEVDLDTAMQ---RVL----KRHISTGKPPDV 281 (313)
Q Consensus 216 Rv~ia~al~~~ar~Li~d~~~lllDE----~~~~~l~~l~~~---~i~vtHd~~~~~~---rv~----griv~~G~~~ev 281 (313)
|++||++++.++++|++|+|+..||. .+++.|.++.+. .|++|||++++.. |++ |++++.|.+++.
T Consensus 404 rl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviivsHd~~~~~~~~d~i~~l~~g~i~~~~~~~~~ 483 (501)
T PRK11288 404 KAILGRWLSEDMKVILLDEPTRGIDVGAKHEIYNVIYELAAQGVAVLFVSSDLPEVLGVADRIVVMREGRIAGELAREQA 483 (501)
T ss_pred HHHHHHHHccCCCEEEEcCCCCCCCHhHHHHHHHHHHHHHhCCCEEEEECCCHHHHHhhCCEEEEEECCEEEEEEccccC
Confidence 99999999999999999999999999 445555555433 4799999999987 554 899998888776
Q ss_pred HHHH
Q 021362 282 AKWR 285 (313)
Q Consensus 282 ~~~~ 285 (313)
....
T Consensus 484 ~~~~ 487 (501)
T PRK11288 484 TERQ 487 (501)
T ss_pred CHHH
Confidence 5443
|
|
| >COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.5e-31 Score=236.97 Aligned_cols=206 Identities=16% Similarity=0.097 Sum_probs=161.6
Q ss_pred cEEEEccceEEcccc-----------------ccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCC
Q 021362 76 PVVEARCMDEVYDAL-----------------AQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQK 138 (313)
Q Consensus 76 ~~l~~~~l~~~y~~~-----------------~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~ 138 (313)
.++.++||+|.|.-. ..-+.++.|+||+|++|+++|++|||||||||++|+|+|++. |++
T Consensus 2 ~~i~~~~l~k~~~~~~k~pgl~g~l~~~~~~k~~~~~AVqdisf~IP~G~ivgflGaNGAGKSTtLKmLTGll~---p~~ 78 (325)
T COG4586 2 AMIMVENLSKNYPVAIKEPGLKGSLNHFFHRKERSIEAVQDISFEIPKGEIVGFLGANGAGKSTTLKMLTGLLL---PTS 78 (325)
T ss_pred ceeEecccccccceeeeCchhHHHHHhhcCchhhhhhhhheeeeecCCCcEEEEEcCCCCcchhhHHHHhCccc---cCC
Confidence 367888888887321 112558999999999999999999999999999999999999 999
Q ss_pred ceeecCCCCCCC-------eEEEEecCCCCCCcccCCcccChHHHHHhcCCCCCccHHHHHHHHHHhhcC--CCccCCCC
Q 021362 139 ASSFDSQVKPPD-------VATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSF 209 (313)
Q Consensus 139 G~i~~~g~~~~~-------~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~~~~~L 209 (313)
|.|.++|.++.+ .+++++-.-..+.. .+.+.+.+......+..|...-.++...+.+.++.. .+.++..|
T Consensus 79 G~v~V~G~~Pf~~~~~~~~~~~~v~gqk~ql~W-dlp~~ds~~v~~~Iy~Ipd~~F~~r~~~l~eiLdl~~~lk~~vr~L 157 (325)
T COG4586 79 GKVRVNGKDPFRRREEYLRSIGLVMGQKLQLWW-DLPALDSLEVLKLIYEIPDDEFAERLDFLTEILDLEGFLKWPVRKL 157 (325)
T ss_pred CeEEecCcCcchhHHHHHHHHHHHhhhhheeee-echhhhhHHHHHHHHhCCHHHHHHHHHHHHHHhcchhhhhhhhhhc
Confidence 999999987543 24444333122222 255677777666778788776677778888888755 56677899
Q ss_pred CCcCCCcchhhhhhccCceEEEEcCCccccChh----hHHHHHhhccc----eEEEEcChHHHHH---HHh----hcccc
Q 021362 210 DHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGG----VWKDVSSMFDE----KWFIEVDLDTAMQ---RVL----KRHIS 274 (313)
Q Consensus 210 SgG~kqRv~ia~al~~~ar~Li~d~~~lllDE~----~~~~l~~l~~~----~i~vtHd~~~~~~---rv~----griv~ 274 (313)
|-|||.|+.+|++|.+++++|.+|++++.||-. +.+.+++...+ +++.||+++.+.. |++ |+++.
T Consensus 158 SlGqRmraeLaaaLLh~p~VLfLDEpTvgLDV~aq~~ir~Flke~n~~~~aTVllTTH~~~di~~lc~rv~~I~~Gqlv~ 237 (325)
T COG4586 158 SLGQRMRAELAAALLHPPKVLFLDEPTVGLDVNAQANIREFLKEYNEERQATVLLTTHIFDDIATLCDRVLLIDQGQLVF 237 (325)
T ss_pred cchHHHHHHHHHHhcCCCcEEEecCCccCcchhHHHHHHHHHHHHHHhhCceEEEEecchhhHHHhhhheEEeeCCcEee
Confidence 999999999999999999999999999999994 44444444332 4699999999988 666 99999
Q ss_pred cCCchHHHHHH
Q 021362 275 TGKPPDVAKWR 285 (313)
Q Consensus 275 ~G~~~ev~~~~ 285 (313)
+|+..++.+++
T Consensus 238 dg~l~~l~~~f 248 (325)
T COG4586 238 DGTLAQLQEQF 248 (325)
T ss_pred cccHHHHHHHh
Confidence 99998887653
|
|
| >TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.7e-31 Score=273.78 Aligned_cols=194 Identities=15% Similarity=0.125 Sum_probs=156.0
Q ss_pred EEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCC--------
Q 021362 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP-------- 148 (313)
Q Consensus 77 ~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~-------- 148 (313)
-|+++|++++|++. ...+|+|+||+|++||.++|+|+||||||||+++|+|+++ |++|+|.++|.+.
T Consensus 463 ~I~~~~vsf~Y~~~--~~~vL~~i~l~i~~G~~iaIvG~sGsGKSTLlklL~gl~~---p~~G~I~idg~~l~~~~~~~l 537 (694)
T TIGR03375 463 EIEFRNVSFAYPGQ--ETPALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQ---PTEGSVLLDGVDIRQIDPADL 537 (694)
T ss_pred eEEEEEEEEEeCCC--CccceeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCC---CCCceEEECCEEhhhCCHHHH
Confidence 49999999999642 1238999999999999999999999999999999999999 9999999999763
Q ss_pred CCeEEEEecCCCCCCcccCCcccChHHHHHhcCCCCCccHHHHHHHHHHhh---------cCCCc----cCCCCCCcCCC
Q 021362 149 PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLR---------NQGSV----YAPSFDHGVGD 215 (313)
Q Consensus 149 ~~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~~~~~~~~~~~~l~~l~---------~~~~~----~~~~LSgG~kq 215 (313)
++.++||+|+++.+. -|++||+.+. .+ ..+.+++.++++..+ .+.+. ....|||||||
T Consensus 538 r~~i~~v~Q~~~lf~---~TI~eNi~~~-----~~-~~~~~~i~~a~~~~~l~~~i~~lp~gl~T~i~e~G~~LSgGQrQ 608 (694)
T TIGR03375 538 RRNIGYVPQDPRLFY---GTLRDNIALG-----AP-YADDEEILRAAELAGVTEFVRRHPDGLDMQIGERGRSLSGGQRQ 608 (694)
T ss_pred HhccEEECCChhhhh---hhHHHHHhCC-----CC-CCCHHHHHHHHHHcChHHHHHhCcccccceecCCCCCCCHHHHH
Confidence 346999999976554 5999999764 12 123455555555544 12222 23489999999
Q ss_pred cchhhhhhccCceEEEEcCCccccCh----hhHHHHHhhcc--ceEEEEcChHHHHH--HHh----hcccccCCchHHHH
Q 021362 216 PVEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFD--EKWFIEVDLDTAMQ--RVL----KRHISTGKPPDVAK 283 (313)
Q Consensus 216 Rv~ia~al~~~ar~Li~d~~~lllDE----~~~~~l~~l~~--~~i~vtHd~~~~~~--rv~----griv~~G~~~ev~~ 283 (313)
|++||||+..+++++++|+++.-||+ .+.+.|.++.+ ..++|||+++.+.. |++ |++++.|+.+++.+
T Consensus 609 RlalARall~~p~iliLDE~Ts~LD~~te~~i~~~l~~~~~~~T~iiItHrl~~~~~~D~iivl~~G~i~e~G~~~eLl~ 688 (694)
T TIGR03375 609 AVALARALLRDPPILLLDEPTSAMDNRSEERFKDRLKRWLAGKTLVLVTHRTSLLDLVDRIIVMDNGRIVADGPKDQVLE 688 (694)
T ss_pred HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhCCEEEEEeCCEEEeeCCHHHHHH
Confidence 99999999999999999999999999 45555665543 35799999998876 655 99999999988865
Q ss_pred H
Q 021362 284 W 284 (313)
Q Consensus 284 ~ 284 (313)
.
T Consensus 689 ~ 689 (694)
T TIGR03375 689 A 689 (694)
T ss_pred H
Confidence 4
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export. |
| >cd03288 ABCC_SUR2 The SUR domain 2 | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.4e-31 Score=240.66 Aligned_cols=194 Identities=13% Similarity=0.081 Sum_probs=146.5
Q ss_pred ccEEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCC------
Q 021362 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP------ 148 (313)
Q Consensus 75 m~~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~------ 148 (313)
...|+++|+++.|++. ...+|+++||+|++|++++|+|+||||||||+++|+|+++ |++|+|.++|.+.
T Consensus 17 ~~~i~~~~l~~~~~~~--~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---~~~G~i~i~g~~i~~~~~~ 91 (257)
T cd03288 17 GGEIKIHDLCVRYENN--LKPVLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVD---IFDGKIVIDGIDISKLPLH 91 (257)
T ss_pred CceEEEEEEEEEeCCC--CCcceeEEEEEEcCCCEEEEECCCCCCHHHHHHHHHcccC---CCCCeEEECCEEhhhCCHH
Confidence 3479999999999752 1129999999999999999999999999999999999998 9999999999653
Q ss_pred --CCeEEEEecCCCCCCcccCCcccChHHHHHhcCCCCCccHHHHHHHHHHhh-------------cCCCccCCCCCCcC
Q 021362 149 --PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLR-------------NQGSVYAPSFDHGV 213 (313)
Q Consensus 149 --~~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~~~~~~~~~~~~l~~l~-------------~~~~~~~~~LSgG~ 213 (313)
.+.++|++|++.. +. .|+.+|+.... ......+.++++.++ ...+....+||+||
T Consensus 92 ~~~~~i~~v~q~~~l-~~--~tv~~nl~~~~-------~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~~~~LS~G~ 161 (257)
T cd03288 92 TLRSRLSIILQDPIL-FS--GSIRFNLDPEC-------KCTDDRLWEALEIAQLKNMVKSLPGGLDAVVTEGGENFSVGQ 161 (257)
T ss_pred HHhhhEEEECCCCcc-cc--cHHHHhcCcCC-------CCCHHHHHHHHHHhCcHHHHhhcccccCcEeccCCCcCCHHH
Confidence 2358999999643 33 48887764210 111222222222221 11223456999999
Q ss_pred CCcchhhhhhccCceEEEEcCCccccChh----hHHHHHhhcc--ceEEEEcChHHHHH--HHh----hcccccCCchHH
Q 021362 214 GDPVEDDILVGLQHKVVIVDGNYLFLDGG----VWKDVSSMFD--EKWFIEVDLDTAMQ--RVL----KRHISTGKPPDV 281 (313)
Q Consensus 214 kqRv~ia~al~~~ar~Li~d~~~lllDE~----~~~~l~~l~~--~~i~vtHd~~~~~~--rv~----griv~~G~~~ev 281 (313)
+||++||++++.++++|++|+|+..||.. +++.+.++.. ..+++||+++++.. |++ |++++.|+++++
T Consensus 162 ~qrl~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~~~~~~tiii~sh~~~~~~~~dri~~l~~G~i~~~g~~~~~ 241 (257)
T cd03288 162 RQLFCLARAFVRKSSILIMDEATASIDMATENILQKVVMTAFADRTVVTIAHRVSTILDADLVLVLSRGILVECDTPENL 241 (257)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHhcCCCEEEEEecChHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 99999999999999999999999999994 4444444322 24699999999877 554 899999988877
Q ss_pred HH
Q 021362 282 AK 283 (313)
Q Consensus 282 ~~ 283 (313)
..
T Consensus 242 ~~ 243 (257)
T cd03288 242 LA 243 (257)
T ss_pred Hh
Confidence 54
|
The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. |
| >cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.4e-31 Score=234.34 Aligned_cols=166 Identities=16% Similarity=0.085 Sum_probs=132.3
Q ss_pred EEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHH--hcccCCCCceeecCCCCCC------
Q 021362 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRR--INKIWPQKASSFDSQVKPP------ 149 (313)
Q Consensus 78 l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl--~~~~~p~~G~i~~~g~~~~------ 149 (313)
|+++|+++.|++.. +|+|+||++++||+++|+|+||||||||+++|+|+ +. |++|+|.++|.+..
T Consensus 1 l~~~~l~~~~~~~~----~l~~is~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~---p~~G~i~~~g~~~~~~~~~~ 73 (200)
T cd03217 1 LEIKDLHVSVGGKE----ILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYE---VTEGEILFKGEDITDLPPEE 73 (200)
T ss_pred CeEEEEEEEeCCEE----eeeccceEECCCcEEEEECCCCCCHHHHHHHHhCCCcCC---CCccEEEECCEECCcCCHHH
Confidence 46899999998655 99999999999999999999999999999999999 46 99999999996531
Q ss_pred ---CeEEEEecCCCCCCcccCCcccChHHHHHhcCCCCCccHHHHHHHHHHhhcCCCccCCCCCCcCCCcchhhhhhccC
Q 021362 150 ---DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQ 226 (313)
Q Consensus 150 ---~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~LSgG~kqRv~ia~al~~~ 226 (313)
..++|++|++..+. .+++.+++ +....+||+||+||+++|++++.+
T Consensus 74 ~~~~~i~~v~q~~~~~~--~~~~~~~l-----------------------------~~~~~~LS~G~~qrv~laral~~~ 122 (200)
T cd03217 74 RARLGIFLAFQYPPEIP--GVKNADFL-----------------------------RYVNEGFSGGEKKRNEILQLLLLE 122 (200)
T ss_pred HhhCcEEEeecChhhcc--CccHHHHH-----------------------------hhccccCCHHHHHHHHHHHHHhcC
Confidence 23899999854332 23443332 112248999999999999999999
Q ss_pred ceEEEEcCCccccCh----hhHHHHHhhcc---ceEEEEcChHHHH--H--HHh----hcccccCCchHHH
Q 021362 227 HKVVIVDGNYLFLDG----GVWKDVSSMFD---EKWFIEVDLDTAM--Q--RVL----KRHISTGKPPDVA 282 (313)
Q Consensus 227 ar~Li~d~~~lllDE----~~~~~l~~l~~---~~i~vtHd~~~~~--~--rv~----griv~~G~~~ev~ 282 (313)
++++++|+|+..||. .+++.|.++.+ ..+++||+++.+. . |++ |++++.| +.++.
T Consensus 123 p~illlDEPt~~LD~~~~~~l~~~L~~~~~~~~tiii~sh~~~~~~~~~~d~i~~l~~G~i~~~~-~~~~~ 192 (200)
T cd03217 123 PDLAILDEPDSGLDIDALRLVAEVINKLREEGKSVLIITHYQRLLDYIKPDRVHVLYDGRIVKSG-DKELA 192 (200)
T ss_pred CCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhhCCEEEEEECCEEEEEc-cHHHH
Confidence 999999999999998 56666666643 2479999999887 3 443 8888888 44554
|
Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet. |
| >PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1e-31 Score=265.07 Aligned_cols=185 Identities=16% Similarity=0.012 Sum_probs=141.5
Q ss_pred ccEEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCC-CCceeecCCCCC-----
Q 021362 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWP-QKASSFDSQVKP----- 148 (313)
Q Consensus 75 m~~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p-~~G~i~~~g~~~----- 148 (313)
.++|+++|+++.|++.. +|+|+||+|++||+++|+||||||||||+|+|+|+.+ | ++|+|+++|.+.
T Consensus 258 ~~~l~~~~l~~~~~~~~----il~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~G~~~---~~~~G~i~~~g~~~~~~~~ 330 (490)
T PRK10938 258 EPRIVLNNGVVSYNDRP----ILHNLSWQVNPGEHWQIVGPNGAGKSTLLSLITGDHP---QGYSNDLTLFGRRRGSGET 330 (490)
T ss_pred CceEEEeceEEEECCee----EEeeceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCC---cccCCeEEEecccCCCCCC
Confidence 35899999999998766 9999999999999999999999999999999999875 5 699999998642
Q ss_pred ----CCeEEEEecCCCCCCcccCCcccChHHHHHh----cCCCCCccHHHHHHHHHHhhcC---CCccCCCCCCcCCCcc
Q 021362 149 ----PDVATVLPMDGFHLYLSQLDAMEDPKEAHAR----RGAPWTFNPLLLLNCLKNLRNQ---GSVYAPSFDHGVGDPV 217 (313)
Q Consensus 149 ----~~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~----~~~~~~~~~~~~~~~l~~l~~~---~~~~~~~LSgG~kqRv 217 (313)
...++|++|+.........++.+++.+.... +........+++.++++.++.. .+.++.+||||||||+
T Consensus 331 ~~~~~~~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv 410 (490)
T PRK10938 331 IWDIKKHIGYVSSSLHLDYRVSTSVRNVILSGFFDSIGIYQAVSDRQQKLAQQWLDILGIDKRTADAPFHSLSWGQQRLA 410 (490)
T ss_pred HHHHHhhceEECHHHHhhcccCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCchhhccCchhhCCHHHHHHH
Confidence 1348999998543222123555554332111 1111112235678888888843 4567779999999999
Q ss_pred hhhhhhccCceEEEEcCCccccCh----hhHHHHHhhccc----eEEEEcChHHHHH
Q 021362 218 EDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFDE----KWFIEVDLDTAMQ 266 (313)
Q Consensus 218 ~ia~al~~~ar~Li~d~~~lllDE----~~~~~l~~l~~~----~i~vtHd~~~~~~ 266 (313)
+||++++.++++|++|+|+..||. .+++.|.++.++ .|++|||++++..
T Consensus 411 ~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~L~~l~~~~~~tviivsHd~~~~~~ 467 (490)
T PRK10938 411 LIVRALVKHPTLLILDEPLQGLDPLNRQLVRRFVDVLISEGETQLLFVSHHAEDAPA 467 (490)
T ss_pred HHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHhcCCcEEEEEecchhhhhh
Confidence 999999999999999999999999 555556565432 4799999998864
|
|
| >PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.8e-31 Score=267.97 Aligned_cols=194 Identities=15% Similarity=0.118 Sum_probs=156.7
Q ss_pred EEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCCC-------
Q 021362 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPP------- 149 (313)
Q Consensus 77 ~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~~------- 149 (313)
.|+++|+++.|++.. ..+|+|+||++++|++++|+||||||||||+++|+|+++ |++|+|.++|.+..
T Consensus 338 ~i~~~~v~f~y~~~~--~~il~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~---p~~G~I~i~g~~i~~~~~~~~ 412 (574)
T PRK11160 338 SLTLNNVSFTYPDQP--QPVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAWD---PQQGEILLNGQPIADYSEAAL 412 (574)
T ss_pred eEEEEEEEEECCCCC--CcceecceEEECCCCEEEEECCCCCCHHHHHHHHhcCCC---CCCceEEECCEEhhhCCHHHH
Confidence 599999999996521 138999999999999999999999999999999999999 99999999997633
Q ss_pred -CeEEEEecCCCCCCcccCCcccChHHHHHhcCCCCCccHHHHHHHHHHhhcC--------CCc----cCCCCCCcCCCc
Q 021362 150 -DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--------GSV----YAPSFDHGVGDP 216 (313)
Q Consensus 150 -~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~--------~~~----~~~~LSgG~kqR 216 (313)
+.++|++|+++.+. -|++||+.++. + ....+.+.++++.++.. .+. ....||||||||
T Consensus 413 r~~i~~v~Q~~~lf~---~ti~~Ni~~~~-----~-~~~~~~i~~al~~~~l~~~i~~p~GldT~vge~g~~LSgGqrqR 483 (574)
T PRK11160 413 RQAISVVSQRVHLFS---ATLRDNLLLAA-----P-NASDEALIEVLQQVGLEKLLEDDKGLNAWLGEGGRQLSGGEQRR 483 (574)
T ss_pred HhheeEEcccchhhc---ccHHHHhhcCC-----C-ccCHHHHHHHHHHcCCHHHHcCccccCchhcCCCCCCCHHHHHH
Confidence 45999999976544 49999997642 2 23455667777776621 112 334799999999
Q ss_pred chhhhhhccCceEEEEcCCccccCh----hhHHHHHhhcc--ceEEEEcChHHHHH--HHh----hcccccCCchHHHHH
Q 021362 217 VEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFD--EKWFIEVDLDTAMQ--RVL----KRHISTGKPPDVAKW 284 (313)
Q Consensus 217 v~ia~al~~~ar~Li~d~~~lllDE----~~~~~l~~l~~--~~i~vtHd~~~~~~--rv~----griv~~G~~~ev~~~ 284 (313)
++|||+++.++++|++|+++.-+|+ .+.+.|.++.+ ..++|+|+++.+.. +++ |++++.|+.+|+.+.
T Consensus 484 ialARall~~~~ililDE~ts~lD~~t~~~i~~~l~~~~~~~tviiitHr~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~ 563 (574)
T PRK11160 484 LGIARALLHDAPLLLLDEPTEGLDAETERQILELLAEHAQNKTVLMITHRLTGLEQFDRICVMDNGQIIEQGTHQELLAQ 563 (574)
T ss_pred HHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEecChhHHHhCCEEEEEeCCeEEEeCCHHHHHhc
Confidence 9999999999999999999999999 45555555543 24799999999877 555 999999999888653
|
|
| >PRK10636 putative ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.4e-31 Score=267.71 Aligned_cols=192 Identities=14% Similarity=0.082 Sum_probs=151.1
Q ss_pred cEEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCCCCeEEEE
Q 021362 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVL 155 (313)
Q Consensus 76 ~~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~~~~i~~v 155 (313)
++|+++||++.|++.. +|+|+||+|.+|+++||+||||||||||+++|+|+++ |++|+|.+++. ..++|+
T Consensus 311 ~~l~~~~l~~~y~~~~----il~~isl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~---p~~G~i~~~~~---~~igy~ 380 (638)
T PRK10636 311 PLLKMEKVSAGYGDRI----ILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGELA---PVSGEIGLAKG---IKLGYF 380 (638)
T ss_pred ceEEEEeeEEEeCCee----eeccceEEECCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCCeEEECCC---EEEEEe
Confidence 4799999999998766 9999999999999999999999999999999999999 99999998642 368999
Q ss_pred ecCCCCCCcccCCcccChHHHHHhcCCCCCccHHHHHHHHHHhhcC---CCccCCCCCCcCCCcchhhhhhccCceEEEE
Q 021362 156 PMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ---GSVYAPSFDHGVGDPVEDDILVGLQHKVVIV 232 (313)
Q Consensus 156 ~qd~~~~~~~~ltv~e~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~---~~~~~~~LSgG~kqRv~ia~al~~~ar~Li~ 232 (313)
+|+.........++.+++.. .........+.++|+.++.. .++++.+|||||||||+||++++.++.+|++
T Consensus 381 ~Q~~~~~l~~~~~~~~~~~~------~~~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGekqRl~La~~l~~~p~lLlL 454 (638)
T PRK10636 381 AQHQLEFLRADESPLQHLAR------LAPQELEQKLRDYLGGFGFQGDKVTEETRRFSGGEKARLVLALIVWQRPNLLLL 454 (638)
T ss_pred cCcchhhCCccchHHHHHHH------hCchhhHHHHHHHHHHcCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 99742212222344443321 11122345678889988853 3567889999999999999999999999999
Q ss_pred cCCccccCh----hhHHHHHhhccceEEEEcChHHHHH---HHh----hccc-ccCCchHHHH
Q 021362 233 DGNYLFLDG----GVWKDVSSMFDEKWFIEVDLDTAMQ---RVL----KRHI-STGKPPDVAK 283 (313)
Q Consensus 233 d~~~lllDE----~~~~~l~~l~~~~i~vtHd~~~~~~---rv~----griv-~~G~~~ev~~ 283 (313)
|+|+..||. .+.+.|.++...+|+||||++++.. |++ |+++ ..|..++...
T Consensus 455 DEPt~~LD~~~~~~l~~~L~~~~gtvi~vSHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~ 517 (638)
T PRK10636 455 DEPTNHLDLDMRQALTEALIDFEGALVVVSHDRHLLRSTTDDLYLVHDGKVEPFDGDLEDYQQ 517 (638)
T ss_pred cCCCCCCCHHHHHHHHHHHHHcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEcCCCHHHHHH
Confidence 999999999 4444555543335799999999876 555 8887 6788888743
|
|
| >cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.9e-31 Score=230.94 Aligned_cols=171 Identities=12% Similarity=0.105 Sum_probs=131.0
Q ss_pred EEEccceEEcccccc-ccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCCCCeEEEEe
Q 021362 78 VEARCMDEVYDALAQ-RLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLP 156 (313)
Q Consensus 78 l~~~~l~~~y~~~~~-~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~~~~i~~v~ 156 (313)
|+++||++.|++..+ ...+|+++||+|++|++++|+||||||||||+++|+|+.+ |++|+|.++| .++|++
T Consensus 1 l~~~~l~~~~~~~~~~~~~il~~~s~~i~~G~~~~i~G~nG~GKSTLl~~i~G~~~---~~~G~i~~~g-----~i~~~~ 72 (204)
T cd03250 1 ISVEDASFTWDSGEQETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELE---KLSGSVSVPG-----SIAYVS 72 (204)
T ss_pred CEEeEEEEecCCCCccccceeeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCcCC---CCCCeEEEcC-----EEEEEe
Confidence 478999999976310 0139999999999999999999999999999999999999 9999999998 699999
Q ss_pred cCCCCCCcccCCcccChHHHHHhcCCCCCccHHHHHHHHHH------hhc-------CCCccCCCCCCcCCCcchhhhhh
Q 021362 157 MDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKN------LRN-------QGSVYAPSFDHGVGDPVEDDILV 223 (313)
Q Consensus 157 qd~~~~~~~~ltv~e~~~~~~~~~~~~~~~~~~~~~~~l~~------l~~-------~~~~~~~~LSgG~kqRv~ia~al 223 (313)
|++..+ . .|+.||+.+.... ..+...+.++. ++. ..+....+||+||+||++||+++
T Consensus 73 q~~~l~-~--~t~~enl~~~~~~-------~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~lS~G~~qrv~laral 142 (204)
T cd03250 73 QEPWIQ-N--GTIRENILFGKPF-------DEERYEKVIKACALEPDLEILPDGDLTEIGEKGINLSGGQKQRISLARAV 142 (204)
T ss_pred cCchhc-c--CcHHHHhccCCCc-------CHHHHHHHHHHcCcHHHHHhccCcccceecCCCCcCCHHHHHHHHHHHHH
Confidence 997543 3 6999998764211 11222222222 221 12345669999999999999999
Q ss_pred ccCceEEEEcCCccccChhhHHHH-----Hhhccc---eEEEEcChHHHHH
Q 021362 224 GLQHKVVIVDGNYLFLDGGVWKDV-----SSMFDE---KWFIEVDLDTAMQ 266 (313)
Q Consensus 224 ~~~ar~Li~d~~~lllDE~~~~~l-----~~l~~~---~i~vtHd~~~~~~ 266 (313)
+.+++++++|+|+..||....+.+ .++.+. .|++||+++.+..
T Consensus 143 ~~~p~llllDEP~~~LD~~~~~~l~~~ll~~~~~~~~tvi~~sh~~~~~~~ 193 (204)
T cd03250 143 YSDADIYLLDDPLSAVDAHVGRHIFENCILGLLLNNKTRILVTHQLQLLPH 193 (204)
T ss_pred hcCCCEEEEeCccccCCHHHHHHHHHHHHHHhccCCCEEEEEeCCHHHHhh
Confidence 999999999999999999443333 333232 3799999988765
|
This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. |
| >PRK11147 ABC transporter ATPase component; Reviewed | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.2e-30 Score=264.60 Aligned_cols=196 Identities=14% Similarity=0.019 Sum_probs=148.4
Q ss_pred ccEEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCCCCeEEE
Q 021362 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATV 154 (313)
Q Consensus 75 m~~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~~~~i~~ 154 (313)
|.||+++||++.|++.. +|+|+||+|++|+++||+||||||||||+|+|+|+++ |++|+|.++|. ..+++
T Consensus 1 m~~l~i~~ls~~~~~~~----il~~is~~i~~Ge~v~LvG~NGsGKSTLLriiaG~~~---p~~G~I~~~~~---~~~~~ 70 (635)
T PRK11147 1 MSLISIHGAWLSFSDAP----LLDNAELHIEDNERVCLVGRNGAGKSTLMKILNGEVL---LDDGRIIYEQD---LIVAR 70 (635)
T ss_pred CcEEEEeeEEEEeCCce----eEeCcEEEECCCCEEEEECCCCCCHHHHHHHHcCCCC---CCCeEEEeCCC---CEEEE
Confidence 45899999999998766 9999999999999999999999999999999999999 99999999763 23677
Q ss_pred EecCCCCCCcccCCcccChH------------------------------HHHHh---c-CCCCCccHHHHHHHHHHhhc
Q 021362 155 LPMDGFHLYLSQLDAMEDPK------------------------------EAHAR---R-GAPWTFNPLLLLNCLKNLRN 200 (313)
Q Consensus 155 v~qd~~~~~~~~ltv~e~~~------------------------------~~~~~---~-~~~~~~~~~~~~~~l~~l~~ 200 (313)
++|++... ...++.+++. ..... . .........++.++++.++.
T Consensus 71 l~q~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl 148 (635)
T PRK11147 71 LQQDPPRN--VEGTVYDFVAEGIEEQAEYLKRYHDISHLVETDPSEKNLNELAKLQEQLDHHNLWQLENRINEVLAQLGL 148 (635)
T ss_pred eccCCCCC--CCCCHHHHHHHhhHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHhCCC
Confidence 87764211 1123443321 10000 0 00111234567888888886
Q ss_pred CCCccCCCCCCcCCCcchhhhhhccCceEEEEcCCccccChhh----HHHHHhhccceEEEEcChHHHHH---HHh----
Q 021362 201 QGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGV----WKDVSSMFDEKWFIEVDLDTAMQ---RVL---- 269 (313)
Q Consensus 201 ~~~~~~~~LSgG~kqRv~ia~al~~~ar~Li~d~~~lllDE~~----~~~l~~l~~~~i~vtHd~~~~~~---rv~---- 269 (313)
..++++.+|||||||||+||++++.++++|++|+|+..||... .+.|.++...+|+||||.+++.. +++
T Consensus 149 ~~~~~~~~LSgGekqRv~LAraL~~~P~lLLLDEPt~~LD~~~~~~L~~~L~~~~~tvlivsHd~~~l~~~~d~i~~L~~ 228 (635)
T PRK11147 149 DPDAALSSLSGGWLRKAALGRALVSNPDVLLLDEPTNHLDIETIEWLEGFLKTFQGSIIFISHDRSFIRNMATRIVDLDR 228 (635)
T ss_pred CCCCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhcCeEEEEEC
Confidence 6677888999999999999999999999999999999999944 44444443345799999999876 555
Q ss_pred hcccc-cCCchHHH
Q 021362 270 KRHIS-TGKPPDVA 282 (313)
Q Consensus 270 griv~-~G~~~ev~ 282 (313)
|+++. .|...+..
T Consensus 229 G~i~~~~g~~~~~~ 242 (635)
T PRK11147 229 GKLVSYPGNYDQYL 242 (635)
T ss_pred CEEEEecCCHHHHH
Confidence 88874 57766544
|
|
| >PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.6e-31 Score=265.85 Aligned_cols=192 Identities=17% Similarity=0.166 Sum_probs=153.1
Q ss_pred EEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCC--------
Q 021362 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP-------- 148 (313)
Q Consensus 77 ~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~-------- 148 (313)
.|+++|+++.|++.. .+|+|+||++++|++++|+|+||||||||+++|+|+++ |++|+|.++|.+.
T Consensus 334 ~I~~~~vsf~y~~~~---~iL~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~---p~~G~I~i~g~~i~~~~~~~~ 407 (588)
T PRK13657 334 AVEFDDVSFSYDNSR---QGVEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVFD---PQSGRILIDGTDIRTVTRASL 407 (588)
T ss_pred eEEEEEEEEEeCCCC---ceecceeEEECCCCEEEEECCCCCCHHHHHHHHhcCcC---CCCCEEEECCEEhhhCCHHHH
Confidence 499999999997521 28999999999999999999999999999999999999 9999999999763
Q ss_pred CCeEEEEecCCCCCCcccCCcccChHHHHHhcCCCCCccHHHHHHHHHHhh---------cCCCc----cCCCCCCcCCC
Q 021362 149 PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLR---------NQGSV----YAPSFDHGVGD 215 (313)
Q Consensus 149 ~~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~~~~~~~~~~~~l~~l~---------~~~~~----~~~~LSgG~kq 215 (313)
++.++|++|+++.+. -|++||+.++ .+. ...+++.++++.++ .+.+. ....|||||||
T Consensus 408 r~~i~~v~Q~~~lf~---~Ti~~Ni~~~-----~~~-~~d~~i~~al~~~~l~~~i~~lp~gldt~i~~~g~~LSgGq~Q 478 (588)
T PRK13657 408 RRNIAVVFQDAGLFN---RSIEDNIRVG-----RPD-ATDEEMRAAAERAQAHDFIERKPDGYDTVVGERGRQLSGGERQ 478 (588)
T ss_pred HhheEEEecCccccc---ccHHHHHhcC-----CCC-CCHHHHHHHHHHhCHHHHHHhCcccccchhcCCCCCCCHHHHH
Confidence 346999999976554 5999999764 121 22344555555443 12222 23379999999
Q ss_pred cchhhhhhccCceEEEEcCCccccCh----hhHHHHHhhcc--ceEEEEcChHHHHH--HHh----hcccccCCchHHHH
Q 021362 216 PVEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFD--EKWFIEVDLDTAMQ--RVL----KRHISTGKPPDVAK 283 (313)
Q Consensus 216 Rv~ia~al~~~ar~Li~d~~~lllDE----~~~~~l~~l~~--~~i~vtHd~~~~~~--rv~----griv~~G~~~ev~~ 283 (313)
|++|||+++.+++++++|+++.-||+ .+.+.|.++.+ ..|+|||+++.+.. |++ |++++.|+.+++..
T Consensus 479 RialARall~~~~iliLDEpts~LD~~t~~~i~~~l~~~~~~~tvIiitHr~~~~~~~D~ii~l~~G~i~~~g~~~~l~~ 558 (588)
T PRK13657 479 RLAIARALLKDPPILILDEATSALDVETEAKVKAALDELMKGRTTFIIAHRLSTVRNADRILVFDNGRVVESGSFDELVA 558 (588)
T ss_pred HHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHhcCCEEEEEEecHHHHHhCCEEEEEECCEEEEeCCHHHHHH
Confidence 99999999999999999999999999 45555665533 35799999998876 655 89999999888753
|
|
| >TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.5e-31 Score=235.00 Aligned_cols=179 Identities=19% Similarity=0.223 Sum_probs=140.1
Q ss_pred cccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCC---CCeEEEEecCCCCCCcccCCcccChHHHHH
Q 021362 102 SNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP---PDVATVLPMDGFHLYLSQLDAMEDPKEAHA 178 (313)
Q Consensus 102 l~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~---~~~i~~v~qd~~~~~~~~ltv~e~~~~~~~ 178 (313)
|+|++|++++|+||||||||||+++|+|+++ |++|+|.++|.+. .+.++|++|++...+...+|+.+|+.+...
T Consensus 1 l~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~ 77 (223)
T TIGR03771 1 LSADKGELLGLLGPNGAGKTTLLRAILGLIP---PAKGTVKVAGASPGKGWRHIGYVPQRHEFAWDFPISVAHTVMSGRT 77 (223)
T ss_pred CccCCCcEEEEECCCCCCHHHHHHHHhCCCC---CCCceEEECCccchHhhCcEEEecccccccCCCCccHHHHHHhccc
Confidence 5789999999999999999999999999999 9999999999763 346999999965433223789999876432
Q ss_pred hc-C---CCCCccHHHHHHHHHHhhcC--CCccCCCCCCcCCCcchhhhhhccCceEEEEcCCccccCh----hhHHHHH
Q 021362 179 RR-G---APWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVS 248 (313)
Q Consensus 179 ~~-~---~~~~~~~~~~~~~l~~l~~~--~~~~~~~LSgG~kqRv~ia~al~~~ar~Li~d~~~lllDE----~~~~~l~ 248 (313)
.. + .+.....+++.++++.++.. .+.++.+||+|||||++||++++.+++++++|+|+..||. .+.+.|.
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llilDEP~~~LD~~~~~~l~~~l~ 157 (223)
T TIGR03771 78 GHIGWLRRPCVADFAAVRDALRRVGLTELADRPVGELSGGQRQRVLVARALATRPSVLLLDEPFTGLDMPTQELLTELFI 157 (223)
T ss_pred cccccccCCcHHHHHHHHHHHHHhCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHH
Confidence 11 1 11122345677888888843 4567779999999999999999999999999999999999 4555555
Q ss_pred hhccc---eEEEEcChHHHHH---HHh---hcccccCCchHHHH
Q 021362 249 SMFDE---KWFIEVDLDTAMQ---RVL---KRHISTGKPPDVAK 283 (313)
Q Consensus 249 ~l~~~---~i~vtHd~~~~~~---rv~---griv~~G~~~ev~~ 283 (313)
++.++ .|++|||++++.. +++ |+++..|+++++..
T Consensus 158 ~~~~~~~tvii~sH~~~~~~~~~d~i~~l~G~i~~~~~~~~~~~ 201 (223)
T TIGR03771 158 ELAGAGTAILMTTHDLAQAMATCDRVVLLNGRVIADGTPQQLQD 201 (223)
T ss_pred HHHHcCCEEEEEeCCHHHHHHhCCEEEEECCEEEeecCHHHhcC
Confidence 55432 4799999998876 444 88888888877643
|
This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown. |
| >KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.97 E-value=7.6e-31 Score=251.15 Aligned_cols=191 Identities=14% Similarity=0.100 Sum_probs=156.3
Q ss_pred EEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCC--------
Q 021362 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP-------- 148 (313)
Q Consensus 77 ~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~-------- 148 (313)
.|+++||++.|+.+. ++|+++||+|++||-|||+|+|||||||++|+|.+++ -++|+|+++|++.
T Consensus 351 ~I~F~dV~f~y~~k~---~iL~gvsf~I~kGekVaIvG~nGsGKSTilr~LlrF~----d~sG~I~IdG~dik~~~~~Sl 423 (591)
T KOG0057|consen 351 SIEFDDVHFSYGPKR---KVLKGVSFTIPKGEKVAIVGSNGSGKSTILRLLLRFF----DYSGSILIDGQDIKEVSLESL 423 (591)
T ss_pred cEEEEeeEEEeCCCC---ceecceeEEecCCCEEEEECCCCCCHHHHHHHHHHHh----ccCCcEEECCeeHhhhChHHh
Confidence 499999999998654 3999999999999999999999999999999999999 6999999999873
Q ss_pred CCeEEEEecCCCCCCcccCCcccChHHHHHhcCCCCCccHHHHHHHHHHhhc---------C----CCccCCCCCCcCCC
Q 021362 149 PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN---------Q----GSVYAPSFDHGVGD 215 (313)
Q Consensus 149 ~~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~~~~~~~~~~~~l~~l~~---------~----~~~~~~~LSgG~kq 215 (313)
++.|||||||...+. -|++.|+.++ .+.. ..+++.+.+++.+. + ...+...|||||||
T Consensus 424 R~~Ig~VPQd~~LFn---dTIl~NI~YG-----n~sa-s~eeV~e~~k~a~~hd~i~~l~~GY~T~VGerG~~LSGGekQ 494 (591)
T KOG0057|consen 424 RQSIGVVPQDSVLFN---DTILYNIKYG-----NPSA-SDEEVVEACKRAGLHDVISRLPDGYQTLVGERGLMLSGGEKQ 494 (591)
T ss_pred hhheeEeCCcccccc---hhHHHHhhcC-----CCCc-CHHHHHHHHHHcCcHHHHHhccccchhhHhhcccccccchHH
Confidence 346999999965544 4999999764 3333 34566677776652 1 11244589999999
Q ss_pred cchhhhhhccCceEEEEcCCccccCh----hhHHHHHhhcc-c-eEEEEcChHHHHH--HHh----hcccccCCchHHHH
Q 021362 216 PVEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFD-E-KWFIEVDLDTAMQ--RVL----KRHISTGKPPDVAK 283 (313)
Q Consensus 216 Rv~ia~al~~~ar~Li~d~~~lllDE----~~~~~l~~l~~-~-~i~vtHd~~~~~~--rv~----griv~~G~~~ev~~ 283 (313)
||+++||++.+|+++++|+++.-||- ++++.+.+... . .|+|-|+++++.. +++ |++.+.|+-.|++.
T Consensus 495 rvslaRa~lKda~Il~~DEaTS~LD~~TE~~i~~~i~~~~~~rTvI~IvH~l~ll~~~DkI~~l~nG~v~e~gth~ell~ 574 (591)
T KOG0057|consen 495 RVSLARAFLKDAPILLLDEATSALDSETEREILDMIMDVMSGRTVIMIVHRLDLLKDFDKIIVLDNGTVKEYGTHSELLA 574 (591)
T ss_pred HHHHHHHHhcCCCeEEecCcccccchhhHHHHHHHHHHhcCCCeEEEEEecchhHhcCCEEEEEECCeeEEeccHHHHhh
Confidence 99999999999999999999999998 56666666432 2 4799999999998 666 99999999999876
|
|
| >cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export | Back alignment and domain information |
|---|
Probab=99.97 E-value=5e-31 Score=225.36 Aligned_cols=146 Identities=18% Similarity=0.210 Sum_probs=122.1
Q ss_pred EEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCCC--------
Q 021362 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPP-------- 149 (313)
Q Consensus 78 l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~~-------- 149 (313)
|+++|+++.|++.. ..+|+++||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|.+..
T Consensus 1 l~~~~l~~~~~~~~--~~~l~~i~~~i~~G~~~~l~G~nGsGKstLl~~i~G~~~---~~~G~i~~~g~~~~~~~~~~~~ 75 (171)
T cd03228 1 IEFKNVSFSYPGRP--KPVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYD---PTSGEILIDGVDLRDLDLESLR 75 (171)
T ss_pred CEEEEEEEEcCCCC--cccccceEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCC---CCCCEEEECCEEhhhcCHHHHH
Confidence 46899999998651 128999999999999999999999999999999999999 99999999996532
Q ss_pred CeEEEEecCCCCCCcccCCcccChHHHHHhcCCCCCccHHHHHHHHHHhhcCCCccCCCCCCcCCCcchhhhhhccCceE
Q 021362 150 DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKV 229 (313)
Q Consensus 150 ~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~LSgG~kqRv~ia~al~~~ar~ 229 (313)
..++|++|++. ++. .|+.||+ ||+||+||++||++++.++++
T Consensus 76 ~~i~~~~~~~~-~~~--~t~~e~l-----------------------------------LS~G~~~rl~la~al~~~p~l 117 (171)
T cd03228 76 KNIAYVPQDPF-LFS--GTIRENI-----------------------------------LSGGQRQRIAIARALLRDPPI 117 (171)
T ss_pred hhEEEEcCCch-hcc--chHHHHh-----------------------------------hCHHHHHHHHHHHHHhcCCCE
Confidence 35899999864 332 4666665 999999999999999999999
Q ss_pred EEEcCCccccCh----hhHHHHHhhccc--eEEEEcChHHHHH
Q 021362 230 VIVDGNYLFLDG----GVWKDVSSMFDE--KWFIEVDLDTAMQ 266 (313)
Q Consensus 230 Li~d~~~lllDE----~~~~~l~~l~~~--~i~vtHd~~~~~~ 266 (313)
|++|+|+..||. .+++.|.++.+. .+++|||++++..
T Consensus 118 lllDEP~~gLD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~ 160 (171)
T cd03228 118 LILDEATSALDPETEALILEALRALAKGKTVIVIAHRLSTIRD 160 (171)
T ss_pred EEEECCCcCCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHHh
Confidence 999999999998 455555555432 4699999998753
|
They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.2e-31 Score=262.75 Aligned_cols=195 Identities=19% Similarity=0.165 Sum_probs=152.2
Q ss_pred cEEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCCC------
Q 021362 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPP------ 149 (313)
Q Consensus 76 ~~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~~------ 149 (313)
++|+++|+++ . +|+++||+|++|+++||+||||||||||+|+|+|+++ |++|+|.++|.+..
T Consensus 267 ~~l~~~~l~~-----~----~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~Gl~~---p~~G~i~~~g~~i~~~~~~~ 334 (510)
T PRK15439 267 PVLTVEDLTG-----E----GFRNISLEVRAGEILGLAGVVGAGRTELAETLYGLRP---ARGGRIMLNGKEINALSTAQ 334 (510)
T ss_pred ceEEEeCCCC-----C----CccceeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCC---CCCcEEEECCEECCCCCHHH
Confidence 4799999983 2 6999999999999999999999999999999999999 99999999986532
Q ss_pred ---CeEEEEecCCC--CCCcccCCcccChHHHHHh-cCC--CCCccHHHHHHHHHHhhcC---CCccCCCCCCcCCCcch
Q 021362 150 ---DVATVLPMDGF--HLYLSQLDAMEDPKEAHAR-RGA--PWTFNPLLLLNCLKNLRNQ---GSVYAPSFDHGVGDPVE 218 (313)
Q Consensus 150 ---~~i~~v~qd~~--~~~~~~ltv~e~~~~~~~~-~~~--~~~~~~~~~~~~l~~l~~~---~~~~~~~LSgG~kqRv~ 218 (313)
..++|++|+.. .++ +.+|+.+|+...... ... ......+.+.++++.++.. .++++.+||||||||++
T Consensus 335 ~~~~~i~~v~q~~~~~~l~-~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~kqrl~ 413 (510)
T PRK15439 335 RLARGLVYLPEDRQSSGLY-LDAPLAWNVCALTHNRRGFWIKPARENAVLERYRRALNIKFNHAEQAARTLSGGNQQKVL 413 (510)
T ss_pred HHhCCcEECCCChhhCCcc-CCCcHHHHHHhhhhhhhccccChHHHHHHHHHHHHHcCCCCCCccCccccCCcHHHHHHH
Confidence 35899999842 222 247888888543111 111 1112234577888888853 46677899999999999
Q ss_pred hhhhhccCceEEEEcCCccccCh----hhHHHHHhhccc---eEEEEcChHHHHH---HHh----hcccccCCchHHHH
Q 021362 219 DDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFDE---KWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAK 283 (313)
Q Consensus 219 ia~al~~~ar~Li~d~~~lllDE----~~~~~l~~l~~~---~i~vtHd~~~~~~---rv~----griv~~G~~~ev~~ 283 (313)
||++++.++++|++|+|+..||. .+++.|+++.++ .|++|||++++.. |++ |+++..|.++++..
T Consensus 414 la~al~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~g~tiIivsHd~~~i~~~~d~i~~l~~G~i~~~~~~~~~~~ 492 (510)
T PRK15439 414 IAKCLEASPQLLIVDEPTRGVDVSARNDIYQLIRSIAAQNVAVLFISSDLEEIEQMADRVLVMHQGEISGALTGAAINV 492 (510)
T ss_pred HHHHHhhCCCEEEECCCCcCcChhHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEEccccCCH
Confidence 99999999999999999999999 455555555432 4799999999987 554 89998888877643
|
|
| >TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.6e-31 Score=263.68 Aligned_cols=194 Identities=15% Similarity=0.104 Sum_probs=155.4
Q ss_pred EEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCC--------
Q 021362 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP-------- 148 (313)
Q Consensus 77 ~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~-------- 148 (313)
-|+++|++++|++.. ..+|+|+||++++|++++|+|+||||||||+++|+|+++ |++|+|.++|.+.
T Consensus 330 ~i~~~~v~f~y~~~~--~~il~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~---~~~G~I~i~g~~i~~~~~~~~ 404 (571)
T TIGR02203 330 DVEFRNVTFRYPGRD--RPALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYE---PDSGQILLDGHDLADYTLASL 404 (571)
T ss_pred eEEEEEEEEEcCCCC--CccccCeeEEecCCCEEEEECCCCCCHHHHHHHHHhccC---CCCCeEEECCEeHHhcCHHHH
Confidence 499999999996521 138999999999999999999999999999999999999 9999999999763
Q ss_pred CCeEEEEecCCCCCCcccCCcccChHHHHHhcCCCCCccHHHHHHHHHHhhc---------CCCcc----CCCCCCcCCC
Q 021362 149 PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN---------QGSVY----APSFDHGVGD 215 (313)
Q Consensus 149 ~~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~~~~~~~~~~~~l~~l~~---------~~~~~----~~~LSgG~kq 215 (313)
++.++|++|+++.+. -|++||+.++ .+...+.+++.++++.++. +.+.. ...|||||||
T Consensus 405 ~~~i~~v~Q~~~lf~---~Ti~~Ni~~~-----~~~~~~~~~i~~~l~~~~l~~~i~~lp~gldt~i~~~g~~LSgGqrQ 476 (571)
T TIGR02203 405 RRQVALVSQDVVLFN---DTIANNIAYG-----RTEQADRAEIERALAAAYAQDFVDKLPLGLDTPIGENGVLLSGGQRQ 476 (571)
T ss_pred HhhceEEccCccccc---ccHHHHHhcC-----CCCCCCHHHHHHHHHHcChHHHHHhCcCcccceecCCCCcCCHHHHH
Confidence 346999999976554 5999999654 2223445666666666541 22322 2379999999
Q ss_pred cchhhhhhccCceEEEEcCCccccCh----hhHHHHHhhcc--ceEEEEcChHHHHH--HHh----hcccccCCchHHHH
Q 021362 216 PVEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFD--EKWFIEVDLDTAMQ--RVL----KRHISTGKPPDVAK 283 (313)
Q Consensus 216 Rv~ia~al~~~ar~Li~d~~~lllDE----~~~~~l~~l~~--~~i~vtHd~~~~~~--rv~----griv~~G~~~ev~~ 283 (313)
|++|||+++.+++++++|+++.-||+ .+.+.|.++.+ ..|+|||+.+.... +++ |++++.|+.+++.+
T Consensus 477 RiaLARall~~~~illLDEpts~LD~~~~~~i~~~L~~~~~~~tiIiitH~~~~~~~~D~ii~l~~g~i~~~g~~~~l~~ 556 (571)
T TIGR02203 477 RLAIARALLKDAPILILDEATSALDNESERLVQAALERLMQGRTTLVIAHRLSTIEKADRIVVMDDGRIVERGTHNELLA 556 (571)
T ss_pred HHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHhCCCEEEEEehhhHHHHhCCEEEEEeCCEEEeeCCHHHHHH
Confidence 99999999999999999999999999 45555555543 24799999988776 655 89999999988754
|
This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes. |
| >PRK10535 macrolide transporter ATP-binding /permease protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.5e-31 Score=266.99 Aligned_cols=201 Identities=15% Similarity=0.116 Sum_probs=162.0
Q ss_pred EEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCC--------
Q 021362 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP-------- 148 (313)
Q Consensus 77 ~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~-------- 148 (313)
+|+++|+++.|++..+...+|+++||++++||+++|+||||||||||+++|+|+++ |++|+|.++|++.
T Consensus 4 ~l~~~nl~~~y~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~---~~~G~i~~~g~~i~~~~~~~~ 80 (648)
T PRK10535 4 LLELKDIRRSYPSGEEQVEVLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDK---PTSGTYRVAGQDVATLDADAL 80 (648)
T ss_pred EEEEeeEEEEeCCCCCCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC---CCCeEEEECCEEcCcCCHHHH
Confidence 79999999999642112238999999999999999999999999999999999999 9999999999763
Q ss_pred ----CCeEEEEecCCCCCCcccCCcccChHHHHHhcCCCCCccHHHHHHHHHHhhc--CCCccCCCCCCcCCCcchhhhh
Q 021362 149 ----PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDIL 222 (313)
Q Consensus 149 ----~~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~~~~~~~~~~~~l~~l~~--~~~~~~~~LSgG~kqRv~ia~a 222 (313)
.+.++|++|+...++ ++|+.||+.+.....+.+..+..+++.++++.++. ..+..+.+||+||+||++||++
T Consensus 81 ~~~~~~~i~~v~q~~~l~~--~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~LS~Gq~qrv~LAra 158 (648)
T PRK10535 81 AQLRREHFGFIFQRYHLLS--HLTAAQNVEVPAVYAGLERKQRLLRAQELLQRLGLEDRVEYQPSQLSGGQQQRVSIARA 158 (648)
T ss_pred HHHHhccEEEEeCCcccCC--CCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhhhcCCcccCCHHHHHHHHHHHH
Confidence 235899999975433 47999999876544443333445567888888874 3456777999999999999999
Q ss_pred hccCceEEEEcCCccccCh----hhHHHHHhhcc---ceEEEEcChHHHHH--HHh----hcccccCCchHHH
Q 021362 223 VGLQHKVVIVDGNYLFLDG----GVWKDVSSMFD---EKWFIEVDLDTAMQ--RVL----KRHISTGKPPDVA 282 (313)
Q Consensus 223 l~~~ar~Li~d~~~lllDE----~~~~~l~~l~~---~~i~vtHd~~~~~~--rv~----griv~~G~~~ev~ 282 (313)
++.++++|++|+|+..||. .+.+.|+++.+ ..+++||+++.+.. |++ |++++.|++++..
T Consensus 159 L~~~P~lLllDEP~~gLD~~s~~~l~~ll~~l~~~g~tilivsH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 231 (648)
T PRK10535 159 LMNGGQVILADEPTGALDSHSGEEVMAILHQLRDRGHTVIIVTHDPQVAAQAERVIEIRDGEIVRNPPAQEKV 231 (648)
T ss_pred HhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEECCCHHHHHhCCEEEEEECCEEEeecCccccc
Confidence 9999999999999999999 44455555433 24799999998865 554 9999999988764
|
|
| >TIGR02868 CydC thiol reductant ABC exporter, CydC subunit | Back alignment and domain information |
|---|
Probab=99.97 E-value=6e-31 Score=261.83 Aligned_cols=170 Identities=15% Similarity=0.167 Sum_probs=137.4
Q ss_pred EEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCCC-------
Q 021362 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPP------- 149 (313)
Q Consensus 77 ~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~~------- 149 (313)
-|+++||++.|++.. .+|+|+||++++|+.++|+||||||||||+++|+|+++ |++|+|.++|.+..
T Consensus 334 ~I~~~~vsf~Y~~~~---~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~---p~~G~I~i~g~~i~~~~~~lr 407 (529)
T TIGR02868 334 TLELRDLSFGYPGSP---PVLDGVSLDLPPGERVAILGPSGSGKSTLLMLLTGLLD---PLQGEVTLDGVSVSSLQDELR 407 (529)
T ss_pred eEEEEEEEEecCCCC---ceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC---CCCcEEEECCEEhhhHHHHHH
Confidence 499999999997532 28999999999999999999999999999999999999 99999999997754
Q ss_pred CeEEEEecCCCCCCcccCCcccChHHHHHhcCCCCCccHHHHHHHHHHhh---------cCCCcc----CCCCCCcCCCc
Q 021362 150 DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLR---------NQGSVY----APSFDHGVGDP 216 (313)
Q Consensus 150 ~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~~~~~~~~~~~~l~~l~---------~~~~~~----~~~LSgG~kqR 216 (313)
+.++||+|+++.+. -|++||+.++. + ....+++.++++..+ .+.+.. ...||||||||
T Consensus 408 ~~i~~V~Q~~~lF~---~TI~eNI~~g~-----~-~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQrQR 478 (529)
T TIGR02868 408 RRISVFAQDAHLFD---TTVRDNLRLGR-----P-DATDEELWAALERVGLADWLRSLPDGLDTVLGEGGARLSGGERQR 478 (529)
T ss_pred hheEEEccCccccc---ccHHHHHhccC-----C-CCCHHHHHHHHHHcCCHHHHHhCcccccchhccccCcCCHHHHHH
Confidence 47999999987654 49999997742 2 223455666666544 122332 23799999999
Q ss_pred chhhhhhccCceEEEEcCCccccCh----hhHHHHHhhcc--ceEEEEcCh
Q 021362 217 VEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFD--EKWFIEVDL 261 (313)
Q Consensus 217 v~ia~al~~~ar~Li~d~~~lllDE----~~~~~l~~l~~--~~i~vtHd~ 261 (313)
++||||+..++++|++|+++.-||. .+.+.+.++.+ ..|+|||++
T Consensus 479 iaiARall~~~~iliLDE~TSaLD~~te~~I~~~l~~~~~~~TvIiItHrl 529 (529)
T TIGR02868 479 LALARALLADAPILLLDEPTEHLDAGTESELLEDLLAALSGKTVVVITHHL 529 (529)
T ss_pred HHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEecCC
Confidence 9999999999999999999999999 45566665533 247999974
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. |
| >COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.97 E-value=3e-31 Score=266.10 Aligned_cols=192 Identities=15% Similarity=0.162 Sum_probs=155.0
Q ss_pred EEEEccceEEccc-cccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCCC------
Q 021362 77 VVEARCMDEVYDA-LAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPP------ 149 (313)
Q Consensus 77 ~l~~~~l~~~y~~-~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~~------ 149 (313)
-|+++|+++.|++ .. +|+|+||++++||.+||+||||||||||+++|.+++. |++|+|.++|++..
T Consensus 328 ~I~f~~vsf~y~~~~~----vl~~is~~i~~Ge~vaiVG~sGsGKSTl~~LL~r~~~---~~~G~I~idg~dI~~i~~~~ 400 (567)
T COG1132 328 SIEFENVSFSYPGKKP----VLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYD---PTSGEILIDGIDIRDISLDS 400 (567)
T ss_pred eEEEEEEEEEcCCCCc----cccCceEEEcCCCEEEEECCCCCCHHHHHHHHhccCC---CCCCeEEECCEehhhcCHHH
Confidence 4999999999984 55 9999999999999999999999999999999999999 99999999997743
Q ss_pred --CeEEEEecCCCCCCcccCCcccChHHHHHhcCCCCCccHHHHHHHHHHhh---------cCCCccC----CCCCCcCC
Q 021362 150 --DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLR---------NQGSVYA----PSFDHGVG 214 (313)
Q Consensus 150 --~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~~~~~~~~~~~~l~~l~---------~~~~~~~----~~LSgG~k 214 (313)
+.+++|+||++.+. -|+++|+.++. +. ...+++.++++..+ .+.+..+ ..||||||
T Consensus 401 lr~~I~~V~Qd~~LF~---~TI~~NI~~g~-----~~-at~eei~~a~k~a~~~d~I~~lp~g~dt~vge~G~~LSgGQr 471 (567)
T COG1132 401 LRKRIGIVSQDPLLFS---GTIRENIALGR-----PD-ATDEEIEEALKLANAHEFIANLPDGYDTIVGERGVNLSGGQR 471 (567)
T ss_pred HHHhccEEcccceeec---ccHHHHHhcCC-----CC-CCHHHHHHHHHHhChHHHHHhCcccccceecCCCccCCHHHH
Confidence 46999999976554 49999997752 22 12344444444332 1233333 38999999
Q ss_pred CcchhhhhhccCceEEEEcCCccccCh----hhHHHHHhhcc--ceEEEEcChHHHHH--HHh----hcccccCCchHHH
Q 021362 215 DPVEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFD--EKWFIEVDLDTAMQ--RVL----KRHISTGKPPDVA 282 (313)
Q Consensus 215 qRv~ia~al~~~ar~Li~d~~~lllDE----~~~~~l~~l~~--~~i~vtHd~~~~~~--rv~----griv~~G~~~ev~ 282 (313)
||++||||+..+|++|++|+++.-+|. .+++.+.++.+ ..++|+|.++.+.. +++ |++++.|+.+|+.
T Consensus 472 QrlaiARall~~~~ILILDEaTSalD~~tE~~I~~~l~~l~~~rT~iiIaHRlsti~~aD~IiVl~~G~i~e~G~h~eLl 551 (567)
T COG1132 472 QRLAIARALLRNPPILILDEATSALDTETEALIQDALKKLLKGRTTLIIAHRLSTIKNADRIIVLDNGRIVERGTHEELL 551 (567)
T ss_pred HHHHHHHHHhcCCCEEEEeccccccCHHhHHHHHHHHHHHhcCCEEEEEeccHhHHHhCCEEEEEECCEEEEecCHHHHH
Confidence 999999999999999999999999998 45555554443 35799999999988 555 9999999999997
Q ss_pred HH
Q 021362 283 KW 284 (313)
Q Consensus 283 ~~ 284 (313)
..
T Consensus 552 ~~ 553 (567)
T COG1132 552 AK 553 (567)
T ss_pred Hc
Confidence 65
|
|
| >cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.2e-31 Score=229.41 Aligned_cols=153 Identities=17% Similarity=0.160 Sum_probs=116.9
Q ss_pred EEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCCCCeEEEEecC
Q 021362 79 EARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMD 158 (313)
Q Consensus 79 ~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~~~~i~~v~qd 158 (313)
+++|+++.|++.. +|+++||++++|++++|+||||||||||+++|+|+++ |++|+|.++|.+...
T Consensus 1 ~~~~l~~~~~~~~----~l~~~~~~i~~G~~~~l~G~nGsGKStLl~~i~G~~~---~~~G~v~~~g~~~~~-------- 65 (180)
T cd03214 1 EVENLSVGYGGRT----VLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLK---PSSGEILLDGKDLAS-------- 65 (180)
T ss_pred CeeEEEEEECCee----eEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCcEEEECCEECCc--------
Confidence 4689999998755 9999999999999999999999999999999999999 999999998754311
Q ss_pred CCCCCcccCCcccChHHHHHhcCCCCCccHHHHHHHHHHhhc--CCCccCCCCCCcCCCcchhhhhhccCceEEEEcCCc
Q 021362 159 GFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNY 236 (313)
Q Consensus 159 ~~~~~~~~ltv~e~~~~~~~~~~~~~~~~~~~~~~~l~~l~~--~~~~~~~~LSgG~kqRv~ia~al~~~ar~Li~d~~~ 236 (313)
. .. ......+.+. .++++.++. ..+..+.+||+||+||++||++++.+++++++|+|+
T Consensus 66 -~--~~--~~~~~~i~~~---------------~q~l~~~gl~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEP~ 125 (180)
T cd03214 66 -L--SP--KELARKIAYV---------------PQALELLGLAHLADRPFNELSGGERQRVLLARALAQEPPILLLDEPT 125 (180)
T ss_pred -C--CH--HHHHHHHhHH---------------HHHHHHcCCHhHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCc
Confidence 0 00 0000011111 015555552 234567799999999999999999999999999999
Q ss_pred cccCh----hhHHHHHhhcc----ceEEEEcChHHHHH
Q 021362 237 LFLDG----GVWKDVSSMFD----EKWFIEVDLDTAMQ 266 (313)
Q Consensus 237 lllDE----~~~~~l~~l~~----~~i~vtHd~~~~~~ 266 (313)
..||. .+.+.|.++.+ ..+++||+++++..
T Consensus 126 ~~LD~~~~~~~~~~l~~~~~~~~~tiii~sh~~~~~~~ 163 (180)
T cd03214 126 SHLDIAHQIELLELLRRLARERGKTVVMVLHDLNLAAR 163 (180)
T ss_pred cCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHH
Confidence 99998 45555555543 24799999998865
|
Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters. |
| >COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.7e-31 Score=252.34 Aligned_cols=193 Identities=16% Similarity=0.102 Sum_probs=158.9
Q ss_pred EEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCCC-------
Q 021362 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPP------- 149 (313)
Q Consensus 77 ~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~~------- 149 (313)
.++++||+++|.+.. .++|+|+||++++||.++|+|++|||||||+++|.|.+. |++|+|.++|.+..
T Consensus 336 ~l~~~~vsF~y~~~~--~~~L~~~~l~l~~GEkvAIlG~SGsGKSTllqLl~~~~~---~~~G~i~~~g~~~~~l~~~~~ 410 (573)
T COG4987 336 ALELRNVSFTYPGQQ--TKALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAWD---PQQGSITLNGVEIASLDEQAL 410 (573)
T ss_pred eeeeccceeecCCCc--cchhhccceeecCCCeEEEECCCCCCHHHHHHHHHhccC---CCCCeeeECCcChhhCChhhH
Confidence 699999999998743 349999999999999999999999999999999999999 99999999997632
Q ss_pred -CeEEEEecCCCCCCcccCCcccChHHHHHhcCCCCCccHHHHHHHHHHhhc---------CCC----ccCCCCCCcCCC
Q 021362 150 -DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN---------QGS----VYAPSFDHGVGD 215 (313)
Q Consensus 150 -~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~~~~~~~~~~~~l~~l~~---------~~~----~~~~~LSgG~kq 215 (313)
+.++++.|.... +. -|+++|+.+. .+. ...+.+.+++++++. +.+ ..-..|||||+|
T Consensus 411 ~e~i~vl~Qr~hl-F~--~Tlr~NL~lA-----~~~-AsDEel~~aL~qvgL~~l~~~~p~gl~t~lge~G~~LSGGE~r 481 (573)
T COG4987 411 RETISVLTQRVHL-FS--GTLRDNLRLA-----NPD-ASDEELWAALQQVGLEKLLESAPDGLNTWLGEGGRRLSGGERR 481 (573)
T ss_pred HHHHhhhccchHH-HH--HHHHHHHhhc-----CCC-CCHHHHHHHHHHcCHHHHHHhChhhhhchhccCCCcCCchHHH
Confidence 358889999654 43 4899998764 233 345667778887762 111 233499999999
Q ss_pred cchhhhhhccCceEEEEcCCccccCh----hhHHHHHhhcc--ceEEEEcChHHHHH--HHh----hcccccCCchHHHH
Q 021362 216 PVEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFD--EKWFIEVDLDTAMQ--RVL----KRHISTGKPPDVAK 283 (313)
Q Consensus 216 Rv~ia~al~~~ar~Li~d~~~lllDE----~~~~~l~~l~~--~~i~vtHd~~~~~~--rv~----griv~~G~~~ev~~ 283 (313)
|++|||++.+++.++++|+|+..||. ++++.|.+..+ ..+||||++..+.. ||+ |+++++|+..++..
T Consensus 482 RLAlAR~LL~dapl~lLDEPTegLD~~TE~~vL~ll~~~~~~kTll~vTHrL~~le~~drIivl~~Gkiie~G~~~~Ll~ 561 (573)
T COG4987 482 RLALARALLHDAPLWLLDEPTEGLDPITERQVLALLFEHAEGKTLLMVTHRLRGLERMDRIIVLDNGKIIEEGTHAELLA 561 (573)
T ss_pred HHHHHHHHHcCCCeEEecCCcccCChhhHHHHHHHHHHHhcCCeEEEEecccccHhhcCEEEEEECCeeeecCCHHhhhc
Confidence 99999999999999999999999999 55555555554 24799999999988 766 99999999999876
|
|
| >COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.4e-31 Score=232.33 Aligned_cols=196 Identities=14% Similarity=0.068 Sum_probs=154.8
Q ss_pred ccEEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCC-------
Q 021362 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK------- 147 (313)
Q Consensus 75 m~~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~------- 147 (313)
+++|+++|++..|+++. +|+|+|++|++||-.+|+||||||||||+++++|.+. |++|.+.+.|+.
T Consensus 29 ~~li~l~~v~v~r~gk~----iL~~isW~V~~ge~W~I~G~NGsGKTTLL~ll~~~~~---pssg~~~~~G~~~G~~~~~ 101 (257)
T COG1119 29 EPLIELKNVSVRRNGKK----ILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEHP---PSSGDVTLLGRRFGKGETI 101 (257)
T ss_pred cceEEecceEEEECCEe----eccccceeecCCCcEEEECCCCCCHHHHHHHHhcccC---CCCCceeeeeeeccCCcch
Confidence 45899999999999998 9999999999999999999999999999999999998 999999988754
Q ss_pred --CCCeEEEEecCCCCCCcccCCcccChHHHHH-hcCCC----CCccHHHHHHHHHHhh--cCCCccCCCCCCcCCCcch
Q 021362 148 --PPDVATVLPMDGFHLYLSQLDAMEDPKEAHA-RRGAP----WTFNPLLLLNCLKNLR--NQGSVYAPSFDHGVGDPVE 218 (313)
Q Consensus 148 --~~~~i~~v~qd~~~~~~~~ltv~e~~~~~~~-~~~~~----~~~~~~~~~~~l~~l~--~~~~~~~~~LSgG~kqRv~ 218 (313)
.++.||+|+-.-..-+....+++|-+.-+.. ..|.. .+.+.+++..+++.++ ...++++.+||-||||||.
T Consensus 102 ~elrk~IG~vS~~L~~~~~~~~~v~dvVlSg~~~siG~y~~~~~~~~~~~a~~lle~~g~~~la~r~~~~LS~Ge~rrvL 181 (257)
T COG1119 102 FELRKRIGLVSSELHERFRVRETVRDVVLSGFFASIGIYQEDLTAEDLAAAQWLLELLGAKHLADRPFGSLSQGEQRRVL 181 (257)
T ss_pred HHHHHHhCccCHHHHhhcccccccceeeeecccccccccccCCCHHHHHHHHHHHHHcchhhhccCchhhcCHhHHHHHH
Confidence 3456888865422223334567776654322 12222 2345667788899888 4578889999999999999
Q ss_pred hhhhhccCceEEEEcCCccccCh----hhHHHHHhhccc-----eEEEEcChHHHHH---HHh----hcccccCC
Q 021362 219 DDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFDE-----KWFIEVDLDTAMQ---RVL----KRHISTGK 277 (313)
Q Consensus 219 ia~al~~~ar~Li~d~~~lllDE----~~~~~l~~l~~~-----~i~vtHd~~~~~~---rv~----griv~~G~ 277 (313)
||||++.++++||+|+|+-.||- .+.+.|.++... .+||||..+++.. +++ |+++..|.
T Consensus 182 iaRALv~~P~LLiLDEP~~GLDl~~re~ll~~l~~~~~~~~~~~ll~VtHh~eEi~~~~th~lll~~g~v~~~g~ 256 (257)
T COG1119 182 IARALVKDPELLILDEPAQGLDLIAREQLLNRLEELAASPGAPALLFVTHHAEEIPPCFTHRLLLKEGEVVAQGK 256 (257)
T ss_pred HHHHHhcCCCEEEecCccccCChHHHHHHHHHHHHHhcCCCCceEEEEEcchhhcccccceEEEeeCCceeeccc
Confidence 99999999999999999999998 445555555443 4799999999887 333 77776663
|
|
| >PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=6e-31 Score=259.71 Aligned_cols=195 Identities=12% Similarity=0.095 Sum_probs=147.0
Q ss_pred cEEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCCC------
Q 021362 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPP------ 149 (313)
Q Consensus 76 ~~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~~------ 149 (313)
++|+++|+++.| .. +|+++||+|++||++||+||||||||||+++|+|+++ |++|+|.++|.+..
T Consensus 249 ~~i~~~~l~~~~--~~----~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~---p~~G~i~~~g~~i~~~~~~~ 319 (491)
T PRK10982 249 VILEVRNLTSLR--QP----SIRDVSFDLHKGEILGIAGLVGAKRTDIVETLFGIRE---KSAGTITLHGKKINNHNANE 319 (491)
T ss_pred cEEEEeCccccc--Cc----ccceeeEEEeCCcEEEEecCCCCCHHHHHHHHcCCCc---CCccEEEECCEECCCCCHHH
Confidence 479999999984 23 8999999999999999999999999999999999999 99999999986542
Q ss_pred ---CeEEEEecCCC--CCCcccCCcccC-----hHHHHHhcCC-CCCccHHHHHHHHHHhhcC---CCccCCCCCCcCCC
Q 021362 150 ---DVATVLPMDGF--HLYLSQLDAMED-----PKEAHARRGA-PWTFNPLLLLNCLKNLRNQ---GSVYAPSFDHGVGD 215 (313)
Q Consensus 150 ---~~i~~v~qd~~--~~~~~~ltv~e~-----~~~~~~~~~~-~~~~~~~~~~~~l~~l~~~---~~~~~~~LSgG~kq 215 (313)
..++|++|+.. .++. .+++.+| +.+....++. ......+.+.++++.++.. .++++.+|||||||
T Consensus 320 ~~~~~i~~~~q~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~q 398 (491)
T PRK10982 320 AINHGFALVTEERRSTGIYA-YLDIGFNSLISNIRNYKNKVGLLDNSRMKSDTQWVIDSMRVKTPGHRTQIGSLSGGNQQ 398 (491)
T ss_pred HHHCCCEEcCCchhhCCccc-CCcHHHheehhhhhhhcccccccCcHHHHHHHHHHHHhcCccCCCcccccccCCcHHHH
Confidence 23889999842 1222 3565544 3221111121 1112234567788887742 46678899999999
Q ss_pred cchhhhhhccCceEEEEcCCccccCh----hhHHHHHhhccc---eEEEEcChHHHHH---HHh----hcccccCCchH
Q 021362 216 PVEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFDE---KWFIEVDLDTAMQ---RVL----KRHISTGKPPD 280 (313)
Q Consensus 216 Rv~ia~al~~~ar~Li~d~~~lllDE----~~~~~l~~l~~~---~i~vtHd~~~~~~---rv~----griv~~G~~~e 280 (313)
|++||++++.++++|++|+|+..||. .+++.|.++.++ .|++|||++++.. |++ |+++..++..+
T Consensus 399 rv~la~al~~~p~illLDEPt~gLD~~~~~~~~~~l~~l~~~~~tvi~vsHd~~~~~~~~d~v~~l~~g~i~~~~~~~~ 477 (491)
T PRK10982 399 KVIIGRWLLTQPEILMLDEPTRGIDVGAKFEIYQLIAELAKKDKGIIIISSEMPELLGITDRILVMSNGLVAGIVDTKT 477 (491)
T ss_pred HHHHHHHHhcCCCEEEEcCCCcccChhHHHHHHHHHHHHHHCCCEEEEECCChHHHHhhCCEEEEEECCEEEEEEcccc
Confidence 99999999999999999999999999 455555555433 4799999999986 544 78776555443
|
|
| >COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.97 E-value=5e-31 Score=226.62 Aligned_cols=195 Identities=15% Similarity=0.137 Sum_probs=155.1
Q ss_pred EEEEccceEEccc-cccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCCCC-----
Q 021362 77 VVEARCMDEVYDA-LAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPD----- 150 (313)
Q Consensus 77 ~l~~~~l~~~y~~-~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~~~----- 150 (313)
|+++.|+.+.|.. ......+|+++|++|.+|+|+.|+|.||||||||++.|+|.+. |++|+|.++|.+..+
T Consensus 1 Mi~~~~~~~~f~~g~~~ek~~l~~~sL~I~~g~FvtViGsNGAGKSTlln~iaG~l~---~t~G~I~Idg~dVtk~~~~~ 77 (263)
T COG1101 1 MISLSNATKTFFKGTPLEKRALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLK---PTSGQILIDGVDVTKKSVAK 77 (263)
T ss_pred CcccccceeeecCCChhHHHHHhcCceeecCCceEEEEcCCCccHHHHHHHhhCccc---cCCceEEECceecccCCHHH
Confidence 4778899988854 3344569999999999999999999999999999999999999 999999999987543
Q ss_pred ---eEEEEecCCCCCCcccCCcccChHHHHHh---cCCCCC---ccHHHHHHHHHHhhcC----CCccCCCCCCcCCCcc
Q 021362 151 ---VATVLPMDGFHLYLSQLDAMEDPKEAHAR---RGAPWT---FNPLLLLNCLKNLRNQ----GSVYAPSFDHGVGDPV 217 (313)
Q Consensus 151 ---~i~~v~qd~~~~~~~~ltv~e~~~~~~~~---~~~~~~---~~~~~~~~~l~~l~~~----~~~~~~~LSgG~kqRv 217 (313)
.++-||||+..-..+.||+.||+.++..+ +|.... ...+.+.+.++.++.+ .+.++.-|||||||-+
T Consensus 78 RA~~larVfQdp~~gt~~~lTieENl~la~~Rg~~rgl~~~ln~~~~~~f~~~l~~l~lgLenrL~~~iglLSGGQRQal 157 (263)
T COG1101 78 RANLLARVFQDPLAGTAPELTIEENLALAESRGKKRGLSSALNERRRSSFRERLARLGLGLENRLSDRIGLLSGGQRQAL 157 (263)
T ss_pred HhhHHHHHhcchhhCCcccccHHHHHHHHHhcCcccccchhhhHHHHHHHHHHHhhcccchhhhhcChhhhccchHHHHH
Confidence 36678999876666679999999987654 222221 1223345556666533 4557789999999999
Q ss_pred hhhhhhccCceEEEEcCCccccChhhHHHHHhhccc--------eEEEEcChHHHHH---HHh----hcccc
Q 021362 218 EDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE--------KWFIEVDLDTAMQ---RVL----KRHIS 274 (313)
Q Consensus 218 ~ia~al~~~ar~Li~d~~~lllDE~~~~~l~~l~~~--------~i~vtHd~~~~~~---rv~----griv~ 274 (313)
++++|..+++++|++|+-+.-||+..-+.+.++-++ .+||||+|+.|.. |.+ |+||.
T Consensus 158 sL~MAtl~~pkiLLLDEHTAALDPkta~~vm~lT~kiV~~~klTtlMVTHnm~~Al~yG~RlImLh~G~Ivl 229 (263)
T COG1101 158 SLLMATLHPPKILLLDEHTAALDPKTAEFVMELTAKIVEEHKLTTLMVTHNMEDALDYGNRLIMLHSGKIVL 229 (263)
T ss_pred HHHHHhcCCCcEEEecchhhcCCcchHHHHHHHHHHHHHhcCCceEEEeccHHHHHhhCCeEEEEeCCeEEE
Confidence 999999999999999999999999554444444332 4799999999998 766 88885
|
|
| >PRK10636 putative ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.3e-30 Score=261.32 Aligned_cols=193 Identities=15% Similarity=0.039 Sum_probs=146.6
Q ss_pred EEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCCCCeEEEEe
Q 021362 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLP 156 (313)
Q Consensus 77 ~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~~~~i~~v~ 156 (313)
||+++||++.|++.. +|+|+||+|++|+++||+||||||||||+|+|+|+++ |++|+|.++|. ..++|++
T Consensus 1 ~i~i~nls~~~g~~~----~l~~vs~~i~~Ge~v~LvG~NGsGKSTLLkiL~G~~~---pd~G~I~~~~~---~~i~~~~ 70 (638)
T PRK10636 1 MIVFSSLQIRRGVRV----LLDNATATINPGQKVGLVGKNGCGKSTLLALLKNEIS---ADGGSYTFPGN---WQLAWVN 70 (638)
T ss_pred CEEEEEEEEEeCCce----eecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCceEEecCC---CEEEEEe
Confidence 489999999999877 9999999999999999999999999999999999999 99999999874 2488999
Q ss_pred cCCCCCCcccCCcccChHHH-----------------------HHhc----CCCCCccHHHHHHHHHHhhcC---CCccC
Q 021362 157 MDGFHLYLSQLDAMEDPKEA-----------------------HARR----GAPWTFNPLLLLNCLKNLRNQ---GSVYA 206 (313)
Q Consensus 157 qd~~~~~~~~ltv~e~~~~~-----------------------~~~~----~~~~~~~~~~~~~~l~~l~~~---~~~~~ 206 (313)
|+..... .++.+++... .... .........++.++|+.++.. .++++
T Consensus 71 q~~~~~~---~~~~~~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~ 147 (638)
T PRK10636 71 QETPALP---QPALEYVIDGDREYRQLEAQLHDANERNDGHAIATIHGKLDAIDAWTIRSRAASLLHGLGFSNEQLERPV 147 (638)
T ss_pred cCCCCCC---CCHHHHHHHhhHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCCchhhcCch
Confidence 8643221 2333322110 0000 011122345678889998853 46678
Q ss_pred CCCCCcCCCcchhhhhhccCceEEEEcCCccccChhhHHHHHhhc----cceEEEEcChHHHHH---HHh----hcccc-
Q 021362 207 PSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMF----DEKWFIEVDLDTAMQ---RVL----KRHIS- 274 (313)
Q Consensus 207 ~~LSgG~kqRv~ia~al~~~ar~Li~d~~~lllDE~~~~~l~~l~----~~~i~vtHd~~~~~~---rv~----griv~- 274 (313)
.+|||||||||+||++++.++++|++|+|+..||....+.|.++. ..+|+||||++++.. |++ |+++.
T Consensus 148 ~~LSgGerqRv~LA~aL~~~P~lLLLDEPtn~LD~~~~~~L~~~L~~~~~tviivsHd~~~l~~~~d~i~~L~~G~i~~~ 227 (638)
T PRK10636 148 SDFSGGWRMRLNLAQALICRSDLLLLDEPTNHLDLDAVIWLEKWLKSYQGTLILISHDRDFLDPIVDKIIHIEQQSLFEY 227 (638)
T ss_pred hhcCHHHHHHHHHHHHHccCCCEEEEcCCCCcCCHHHHHHHHHHHHhCCCeEEEEeCCHHHHHHhcCEEEEEeCCEEEEe
Confidence 899999999999999999999999999999999995444444443 335799999999876 555 77763
Q ss_pred cCCchHHH
Q 021362 275 TGKPPDVA 282 (313)
Q Consensus 275 ~G~~~ev~ 282 (313)
.|......
T Consensus 228 ~g~~~~~~ 235 (638)
T PRK10636 228 TGNYSSFE 235 (638)
T ss_pred cCCHHHHH
Confidence 56655543
|
|
| >PRK13409 putative ATPase RIL; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.8e-30 Score=260.49 Aligned_cols=182 Identities=14% Similarity=0.119 Sum_probs=148.3
Q ss_pred cEEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCCCCeEEEE
Q 021362 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVL 155 (313)
Q Consensus 76 ~~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~~~~i~~v 155 (313)
++|+++|+++.|++. .|+++||+|++||+++|+||||||||||+|+|+|+++ |++|+|.++ ..++|+
T Consensus 339 ~~l~~~~ls~~~~~~-----~l~~~s~~i~~Geiv~l~G~NGsGKSTLlk~L~Gl~~---p~~G~I~~~-----~~i~y~ 405 (590)
T PRK13409 339 TLVEYPDLTKKLGDF-----SLEVEGGEIYEGEVIGIVGPNGIGKTTFAKLLAGVLK---PDEGEVDPE-----LKISYK 405 (590)
T ss_pred eEEEEcceEEEECCE-----EEEecceEECCCCEEEEECCCCCCHHHHHHHHhCCCC---CCceEEEEe-----eeEEEe
Confidence 579999999999752 5899999999999999999999999999999999999 999999886 258999
Q ss_pred ecCCCCCCcccCCcccChHHHHHhcCCCCCccHHHHHHHHHHhhc--CCCccCCCCCCcCCCcchhhhhhccCceEEEEc
Q 021362 156 PMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVD 233 (313)
Q Consensus 156 ~qd~~~~~~~~ltv~e~~~~~~~~~~~~~~~~~~~~~~~l~~l~~--~~~~~~~~LSgG~kqRv~ia~al~~~ar~Li~d 233 (313)
+|+.... ..+|+.+|+.+.....+ ....+.++++.++. ..++++.+|||||||||+||++++.++++|++|
T Consensus 406 ~Q~~~~~--~~~tv~e~l~~~~~~~~-----~~~~~~~~L~~l~l~~~~~~~~~~LSGGe~QRvaiAraL~~~p~llLLD 478 (590)
T PRK13409 406 PQYIKPD--YDGTVEDLLRSITDDLG-----SSYYKSEIIKPLQLERLLDKNVKDLSGGELQRVAIAACLSRDADLYLLD 478 (590)
T ss_pred cccccCC--CCCcHHHHHHHHhhhcC-----hHHHHHHHHHHCCCHHHHhCCcccCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 9996533 35899999887532211 12345778888874 346788899999999999999999999999999
Q ss_pred CCccccCh----hhHHHHHhhcc----ceEEEEcChHHHHH---HHh---hcccccCC
Q 021362 234 GNYLFLDG----GVWKDVSSMFD----EKWFIEVDLDTAMQ---RVL---KRHISTGK 277 (313)
Q Consensus 234 ~~~lllDE----~~~~~l~~l~~----~~i~vtHd~~~~~~---rv~---griv~~G~ 277 (313)
+|+..||. .+++.|+++.+ ..++||||++++.. |++ |++...|.
T Consensus 479 EPt~~LD~~~~~~l~~~l~~l~~~~g~tviivsHD~~~~~~~aDrvivl~~~~~~~g~ 536 (590)
T PRK13409 479 EPSAHLDVEQRLAVAKAIRRIAEEREATALVVDHDIYMIDYISDRLMVFEGEPGKHGH 536 (590)
T ss_pred CCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEcCcceeeee
Confidence 99999999 55666666643 24799999999886 554 66665544
|
|
| >TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.2e-30 Score=262.21 Aligned_cols=195 Identities=18% Similarity=0.208 Sum_probs=154.1
Q ss_pred EEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCC--------
Q 021362 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP-------- 148 (313)
Q Consensus 77 ~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~-------- 148 (313)
.|+++|+++.|++.. ...+|+|+||++++||.++|+|+||||||||+++|+|+++ |++|+|.++|.+.
T Consensus 337 ~i~~~~v~f~y~~~~-~~~iL~~inl~i~~Ge~i~IvG~sGsGKSTLlklL~gl~~---p~~G~I~i~g~~i~~~~~~~~ 412 (576)
T TIGR02204 337 EIEFEQVNFAYPARP-DQPALDGLNLTVRPGETVALVGPSGAGKSTLFQLLLRFYD---PQSGRILLDGVDLRQLDPAEL 412 (576)
T ss_pred eEEEEEEEEECCCCC-CCccccceeEEecCCCEEEEECCCCCCHHHHHHHHHhccC---CCCCEEEECCEEHHhcCHHHH
Confidence 599999999997521 1238999999999999999999999999999999999999 9999999999663
Q ss_pred CCeEEEEecCCCCCCcccCCcccChHHHHHhcCCCCCccHHHHHHHHHHhhc---------CCCc----cCCCCCCcCCC
Q 021362 149 PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN---------QGSV----YAPSFDHGVGD 215 (313)
Q Consensus 149 ~~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~~~~~~~~~~~~l~~l~~---------~~~~----~~~~LSgG~kq 215 (313)
.+.++|++|+++.+. .|++||+.++ .+. .+.+++.++++.++. +.+. ....|||||||
T Consensus 413 ~~~i~~~~Q~~~lf~---~Ti~~Ni~~~-----~~~-~~~~~~~~~l~~~~l~~~i~~l~~gl~t~i~~~g~~LSgGq~Q 483 (576)
T TIGR02204 413 RARMALVPQDPVLFA---ASVMENIRYG-----RPD-ATDEEVEAAARAAHAHEFISALPEGYDTYLGERGVTLSGGQRQ 483 (576)
T ss_pred HHhceEEccCCcccc---ccHHHHHhcC-----CCC-CCHHHHHHHHHHcCcHHHHHhCCCCCCceeCCCCCcCCHHHHH
Confidence 246999999977554 5999999664 221 234555555655441 2222 23379999999
Q ss_pred cchhhhhhccCceEEEEcCCccccCh----hhHHHHHhhcc--ceEEEEcChHHHHH--HHh----hcccccCCchHHHH
Q 021362 216 PVEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFD--EKWFIEVDLDTAMQ--RVL----KRHISTGKPPDVAK 283 (313)
Q Consensus 216 Rv~ia~al~~~ar~Li~d~~~lllDE----~~~~~l~~l~~--~~i~vtHd~~~~~~--rv~----griv~~G~~~ev~~ 283 (313)
|+++||++..+++++++|+++.-+|+ .+.+.++++.+ ..|+|||+++.... |++ |++++.|+.+++.+
T Consensus 484 rl~laRal~~~~~ililDEpts~lD~~~~~~i~~~l~~~~~~~t~IiitH~~~~~~~~d~vi~l~~g~~~~~g~~~~l~~ 563 (576)
T TIGR02204 484 RIAIARAILKDAPILLLDEATSALDAESEQLVQQALETLMKGRTTLIIAHRLATVLKADRIVVMDQGRIVAQGTHAELIA 563 (576)
T ss_pred HHHHHHHHHhCCCeEEEeCcccccCHHHHHHHHHHHHHHhCCCEEEEEecchHHHHhCCEEEEEECCEEEeeecHHHHHH
Confidence 99999999999999999999999999 44555555533 24799999988876 665 99999999888754
Q ss_pred H
Q 021362 284 W 284 (313)
Q Consensus 284 ~ 284 (313)
.
T Consensus 564 ~ 564 (576)
T TIGR02204 564 K 564 (576)
T ss_pred c
Confidence 3
|
This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins. |
| >PRK11147 ABC transporter ATPase component; Reviewed | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.4e-30 Score=260.59 Aligned_cols=193 Identities=15% Similarity=0.120 Sum_probs=150.6
Q ss_pred cEEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCCCCeEEEE
Q 021362 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVL 155 (313)
Q Consensus 76 ~~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~~~~i~~v 155 (313)
++|+++||++.|++.. +|+++||+|.+|+++||+||||||||||+++|+|+++ |++|+|.+ |.. -.++|+
T Consensus 318 ~~l~~~~l~~~~~~~~----il~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~---p~~G~i~~-~~~--~~i~y~ 387 (635)
T PRK11147 318 IVFEMENVNYQIDGKQ----LVKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQLQ---ADSGRIHC-GTK--LEVAYF 387 (635)
T ss_pred ceEEEeeeEEEECCeE----EEcCcEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC---CCCcEEEE-CCC--cEEEEE
Confidence 4799999999998766 9999999999999999999999999999999999998 99999998 432 258999
Q ss_pred ecCCCCCCcccCCcccChHHHHHhcCCCCCccHHHHHHHHHHhhcC---CCccCCCCCCcCCCcchhhhhhccCceEEEE
Q 021362 156 PMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ---GSVYAPSFDHGVGDPVEDDILVGLQHKVVIV 232 (313)
Q Consensus 156 ~qd~~~~~~~~ltv~e~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~---~~~~~~~LSgG~kqRv~ia~al~~~ar~Li~ 232 (313)
+|+...++ +.+|+.+|+.+...... .......+.++++.++.. .++++.+||||||||++||++++.++.+|++
T Consensus 388 ~q~~~~l~-~~~tv~e~l~~~~~~~~--~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGekqRl~la~al~~~p~lLlL 464 (635)
T PRK11147 388 DQHRAELD-PEKTVMDNLAEGKQEVM--VNGRPRHVLGYLQDFLFHPKRAMTPVKALSGGERNRLLLARLFLKPSNLLIL 464 (635)
T ss_pred eCcccccC-CCCCHHHHHHhhccccc--ccchHHHHHHHHHhcCCCHHHHhChhhhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 99753333 35899999876432111 111234567788887742 4667789999999999999999999999999
Q ss_pred cCCccccChhhHHHHHhhcc----ceEEEEcChHHHHH---HHh-----hcccc-cCCchHH
Q 021362 233 DGNYLFLDGGVWKDVSSMFD----EKWFIEVDLDTAMQ---RVL-----KRHIS-TGKPPDV 281 (313)
Q Consensus 233 d~~~lllDE~~~~~l~~l~~----~~i~vtHd~~~~~~---rv~-----griv~-~G~~~ev 281 (313)
|+|+..||....+.|.++.. ..|+||||.+++.. |++ |+++. .|.-.+.
T Consensus 465 DEPt~~LD~~~~~~l~~~l~~~~~tvi~vSHd~~~~~~~~d~i~~l~~~g~i~~~~g~y~~y 526 (635)
T PRK11147 465 DEPTNDLDVETLELLEELLDSYQGTVLLVSHDRQFVDNTVTECWIFEGNGKIGRYVGGYHDA 526 (635)
T ss_pred cCCCCCCCHHHHHHHHHHHHhCCCeEEEEECCHHHHHHhcCEEEEEeCCCeEEEccCCHHHH
Confidence 99999999955444444433 35799999999876 433 45554 4555554
|
|
| >COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.3e-30 Score=215.04 Aligned_cols=202 Identities=15% Similarity=0.139 Sum_probs=155.4
Q ss_pred cEEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCC--------
Q 021362 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK-------- 147 (313)
Q Consensus 76 ~~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~-------- 147 (313)
|++++.+++|.|+... ..+||||++.+||+.||+|.||||||||++||++-+. |+.|+|.+...+
T Consensus 5 PLL~V~~lsk~Yg~~~----gc~~vsF~l~PGeVLgiVGESGSGKtTLL~~is~rl~---p~~G~v~Y~~r~~~~~dl~~ 77 (258)
T COG4107 5 PLLSVSGLSKLYGPGK----GCRDVSFDLYPGEVLGIVGESGSGKTTLLKCISGRLT---PDAGTVTYRMRDGQPRDLYT 77 (258)
T ss_pred cceeehhhhhhhCCCc----CccccceeecCCcEEEEEecCCCcHHhHHHHHhcccC---CCCCeEEEEcCCCCchhHhh
Confidence 5899999999999887 8999999999999999999999999999999999999 999999875422
Q ss_pred ---------CCCeEEEEecCCCCCCcccCCcccChHHHHHhcCCC-CCccHHHHHHHHHHhhcC---CCccCCCCCCcCC
Q 021362 148 ---------PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAP-WTFNPLLLLNCLKNLRNQ---GSVYAPSFDHGVG 214 (313)
Q Consensus 148 ---------~~~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~-~~~~~~~~~~~l~~l~~~---~~~~~~~LSgG~k 214 (313)
.+..-|+|.|++..-.....+.-.|+-.-+...|.. .-..++.+.++|+.+... .+..+.++||||+
T Consensus 78 msEaeRR~L~RTeWG~VhQnP~DGLRm~VSAG~NiGERlma~G~RHYG~iR~~a~~WL~~VEI~~~RiDD~PrtFSGGMq 157 (258)
T COG4107 78 MSEAERRRLLRTEWGFVHQNPRDGLRMQVSAGGNIGERLMAIGARHYGNIRAEAQDWLEEVEIDLDRIDDLPRTFSGGMQ 157 (258)
T ss_pred hchHHHHHHhhhccceeecCccccceeeeccCCccchhHHhhhhhhhhhHHHHHHHHHHhcccCcccccCcccccchHHH
Confidence 011368899987654443345555654322111111 123456677889988843 3446779999999
Q ss_pred CcchhhhhhccCceEEEEcCCccccCh----hhHHHHHhhccc----eEEEEcChHHHHH---HHh----hcccccCCch
Q 021362 215 DPVEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFDE----KWFIEVDLDTAMQ---RVL----KRHISTGKPP 279 (313)
Q Consensus 215 qRv~ia~al~~~ar~Li~d~~~lllDE----~~~~~l~~l~~~----~i~vtHd~~~~~~---rv~----griv~~G~~~ 279 (313)
||+.||+-++..+|.+++|+|+-.||- .+++.++.+..+ .++||||+..+.. |.. |++++.|-++
T Consensus 158 QRLQiARnLVt~PrLvfMDEPTGGLDVSVQARLLDllrgLv~~l~la~viVTHDl~VarLla~rlmvmk~g~vve~GLTD 237 (258)
T COG4107 158 QRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLAVARLLADRLMVMKQGQVVESGLTD 237 (258)
T ss_pred HHHHHHHHhccCCceEEecCCCCCcchhhHHHHHHHHHHHHHhcCceEEEEechhHHHHHhhhcceeecCCCEecccccc
Confidence 999999999999999999999999998 445555555433 4799999999876 544 9999999888
Q ss_pred HHHHH
Q 021362 280 DVAKW 284 (313)
Q Consensus 280 ev~~~ 284 (313)
.++.+
T Consensus 238 rvLDD 242 (258)
T COG4107 238 RVLDD 242 (258)
T ss_pred ccccC
Confidence 88654
|
|
| >cd03290 ABCC_SUR1_N The SUR domain 1 | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.7e-30 Score=228.13 Aligned_cols=171 Identities=11% Similarity=0.023 Sum_probs=130.6
Q ss_pred EEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCC----------
Q 021362 79 EARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP---------- 148 (313)
Q Consensus 79 ~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~---------- 148 (313)
.+.|+.+.|+... .+|+++||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|.+.
T Consensus 2 ~~~~~~~~~~~~~---~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~---~~~G~i~~~g~~~~~~~~~~~~~ 75 (218)
T cd03290 2 QVTNGYFSWGSGL---ATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQ---TLEGKVHWSNKNESEPSFEATRS 75 (218)
T ss_pred eeeeeEEecCCCC---cceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCC---CCCCeEEECCcccccccccccch
Confidence 5788999997432 29999999999999999999999999999999999999 9999999998642
Q ss_pred --CCeEEEEecCCCCCCcccCCcccChHHHHHhcCCCCCccHHHHHHHHHHhhc-------------CCCccCCCCCCcC
Q 021362 149 --PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN-------------QGSVYAPSFDHGV 213 (313)
Q Consensus 149 --~~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~~~~~~~~~~~~l~~l~~-------------~~~~~~~~LSgG~ 213 (313)
.+.++|++|++..+ . .|+.+|+.+... . ..++..+.++.++. ..+.++..||+||
T Consensus 76 ~~~~~i~~~~q~~~~~-~--~t~~~nl~~~~~---~----~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~ 145 (218)
T cd03290 76 RNRYSVAYAAQKPWLL-N--ATVEENITFGSP---F----NKQRYKAVTDACSLQPDIDLLPFGDQTEIGERGINLSGGQ 145 (218)
T ss_pred hhcceEEEEcCCCccc-c--ccHHHHHhhcCc---C----CHHHHHHHHHHhCcHHHHHhCcCccccCcccCCCcCCHHH
Confidence 13589999996543 3 689999876421 1 12222333343331 1234567999999
Q ss_pred CCcchhhhhhccCceEEEEcCCccccChhhHHHH------Hhhcc---ceEEEEcChHHHH
Q 021362 214 GDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDV------SSMFD---EKWFIEVDLDTAM 265 (313)
Q Consensus 214 kqRv~ia~al~~~ar~Li~d~~~lllDE~~~~~l------~~l~~---~~i~vtHd~~~~~ 265 (313)
+||++||++++.++++|++|+|+..||....+.+ ..+.+ ..|++||+++.+.
T Consensus 146 ~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~~ll~~~~~~~~tii~~sH~~~~~~ 206 (218)
T cd03290 146 RQRICVARALYQNTNIVFLDDPFSALDIHLSDHLMQEGILKFLQDDKRTLVLVTHKLQYLP 206 (218)
T ss_pred HHHHHHHHHHhhCCCEEEEeCCccccCHHHHHHHHHHHHHHHHhcCCCEEEEEeCChHHHh
Confidence 9999999999999999999999999999433322 22322 2479999999864
|
The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. |
| >cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos) | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.6e-30 Score=220.66 Aligned_cols=131 Identities=18% Similarity=0.221 Sum_probs=110.0
Q ss_pred EEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCCCC-------
Q 021362 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPD------- 150 (313)
Q Consensus 78 l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~~~------- 150 (313)
|+++|+++.|++.. +++++||++++||+++|+||||||||||+++|+|+++ |++|+|.++|.+...
T Consensus 1 l~~~~l~~~~~~~~----vl~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~---~~~G~v~~~g~~~~~~~~~~~~ 73 (163)
T cd03216 1 LELRGITKRFGGVK----ALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYK---PDSGEILVDGKEVSFASPRDAR 73 (163)
T ss_pred CEEEEEEEEECCeE----EEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCeEEEECCEECCcCCHHHHH
Confidence 46899999998765 9999999999999999999999999999999999999 999999998753211
Q ss_pred --eEEEEecCCCCCCcccCCcccChHHHHHhcCCCCCccHHHHHHHHHHhhcCCCccCCCCCCcCCCcchhhhhhccCce
Q 021362 151 --VATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHK 228 (313)
Q Consensus 151 --~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~LSgG~kqRv~ia~al~~~ar 228 (313)
.++|++ +||+||+||+++|++++.+++
T Consensus 74 ~~~i~~~~---------------------------------------------------qLS~G~~qrl~laral~~~p~ 102 (163)
T cd03216 74 RAGIAMVY---------------------------------------------------QLSVGERQMVEIARALARNAR 102 (163)
T ss_pred hcCeEEEE---------------------------------------------------ecCHHHHHHHHHHHHHhcCCC
Confidence 122222 299999999999999999999
Q ss_pred EEEEcCCccccCh----hhHHHHHhhccc---eEEEEcChHHHHH
Q 021362 229 VVIVDGNYLFLDG----GVWKDVSSMFDE---KWFIEVDLDTAMQ 266 (313)
Q Consensus 229 ~Li~d~~~lllDE----~~~~~l~~l~~~---~i~vtHd~~~~~~ 266 (313)
++++|+|+..||. .+++.|+++.++ .+++|||++++..
T Consensus 103 illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~ 147 (163)
T cd03216 103 LLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHRLDEVFE 147 (163)
T ss_pred EEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHH
Confidence 9999999999999 455556555432 4799999998765
|
The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. |
| >TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family | Back alignment and domain information |
|---|
Probab=99.96 E-value=1e-30 Score=260.99 Aligned_cols=193 Identities=16% Similarity=0.092 Sum_probs=150.0
Q ss_pred EEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCC--------
Q 021362 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP-------- 148 (313)
Q Consensus 77 ~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~-------- 148 (313)
.|+++|+++.|++.. ..+|+|+||++++|+.++|+||||||||||+++|+|+++ |++|+|.++|.+.
T Consensus 316 ~i~~~~v~~~y~~~~--~~~l~~~~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~---~~~G~i~~~g~~i~~~~~~~~ 390 (544)
T TIGR01842 316 HLSVENVTIVPPGGK--KPTLRGISFRLQAGEALAIIGPSGSGKSTLARLIVGIWP---PTSGSVRLDGADLKQWDRETF 390 (544)
T ss_pred eEEEEEEEEEcCCCC--ccccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCceEEECCEehhhCCHHHH
Confidence 599999999996421 128999999999999999999999999999999999999 9999999999763
Q ss_pred CCeEEEEecCCCCCCcccCCcccChHHHHHhcCCCCCccHHHHHHH---------HHHhhcCCC----ccCCCCCCcCCC
Q 021362 149 PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNC---------LKNLRNQGS----VYAPSFDHGVGD 215 (313)
Q Consensus 149 ~~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~~~~~~~~~~~~---------l~~l~~~~~----~~~~~LSgG~kq 215 (313)
++.++|++|+++.+. .|++||+.+.. + ....+++.+. ++.+..+.+ .....|||||||
T Consensus 391 ~~~i~~v~q~~~lf~---~ti~~Ni~~~~-----~-~~~~~~~~~~~~~~~~~~~i~~l~~gl~t~~~~~g~~LSgGq~q 461 (544)
T TIGR01842 391 GKHIGYLPQDVELFP---GTVAENIARFG-----E-NADPEKIIEAAKLAGVHELILRLPDGYDTVIGPGGATLSGGQRQ 461 (544)
T ss_pred hhheEEecCCccccc---ccHHHHHhccC-----C-CCCHHHHHHHHHHhChHHHHHhCccccccccCCCcCCCCHHHHH
Confidence 346999999976543 49999997431 1 1123333333 333322222 234589999999
Q ss_pred cchhhhhhccCceEEEEcCCccccCh----hhHHHHHhhc---cceEEEEcChHHHHH--HHh----hcccccCCchHHH
Q 021362 216 PVEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMF---DEKWFIEVDLDTAMQ--RVL----KRHISTGKPPDVA 282 (313)
Q Consensus 216 Rv~ia~al~~~ar~Li~d~~~lllDE----~~~~~l~~l~---~~~i~vtHd~~~~~~--rv~----griv~~G~~~ev~ 282 (313)
|++||||+..++++|++|+++..||. .+.+.|.++. ...+++||+++.+.. +++ |++++.|+.+++.
T Consensus 462 rl~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~~tvi~ith~~~~~~~~d~i~~l~~G~i~~~g~~~~l~ 541 (544)
T TIGR01842 462 RIALARALYGDPKLVVLDEPNSNLDEEGEQALANAIKALKARGITVVVITHRPSLLGCVDKILVLQDGRIARFGERDEVL 541 (544)
T ss_pred HHHHHHHHhcCCCEEEEeCCccccCHHHHHHHHHHHHHHhhCCCEEEEEeCCHHHHHhCCEEEEEECCEEEeeCCHHHHh
Confidence 99999999999999999999999998 4556666653 234799999997765 555 9999999987764
Q ss_pred H
Q 021362 283 K 283 (313)
Q Consensus 283 ~ 283 (313)
.
T Consensus 542 ~ 542 (544)
T TIGR01842 542 A 542 (544)
T ss_pred h
Confidence 3
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. |
| >TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.2e-30 Score=265.53 Aligned_cols=194 Identities=15% Similarity=0.154 Sum_probs=154.7
Q ss_pred EEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCCC-------
Q 021362 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPP------- 149 (313)
Q Consensus 77 ~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~~------- 149 (313)
.|+++|+++.|++.. ..+|+|+||+|++|+.++|+|+||||||||+|+|+|++. |++|+|.++|.+..
T Consensus 455 ~i~~~~vsf~y~~~~--~~il~~i~l~i~~G~~vaivG~sGsGKSTL~~ll~g~~~---p~~G~I~idg~~i~~~~~~~~ 529 (694)
T TIGR01846 455 AITFENIRFRYAPDS--PEVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYT---PQHGQVLVDGVDLAIADPAWL 529 (694)
T ss_pred eEEEEEEEEEcCCCC--ccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCC---CCCceEEECCEehhhCCHHHH
Confidence 499999999996421 128999999999999999999999999999999999999 99999999997743
Q ss_pred -CeEEEEecCCCCCCcccCCcccChHHHHHhcCCCCCccHHHHHHHHHHhh---------cCCCc----cCCCCCCcCCC
Q 021362 150 -DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLR---------NQGSV----YAPSFDHGVGD 215 (313)
Q Consensus 150 -~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~~~~~~~~~~~~l~~l~---------~~~~~----~~~~LSgG~kq 215 (313)
+.++|++|+++.+. .|++||+.+. .+. ...+.+.++++..+ .+.+. ....|||||||
T Consensus 530 r~~i~~v~q~~~lf~---~ti~eNi~~~-----~~~-~~~~~i~~a~~~~~l~~~i~~lp~gl~t~i~~~g~~LSgGq~q 600 (694)
T TIGR01846 530 RRQMGVVLQENVLFS---RSIRDNIALC-----NPG-APFEHVIHAAKLAGAHDFISELPQGYNTEVGEKGANLSGGQRQ 600 (694)
T ss_pred HHhCeEEccCCeehh---hhHHHHHhcC-----CCC-CCHHHHHHHHHHcChHHHHHhCcCccCcEecCCCCCCCHHHHH
Confidence 45999999976554 5999999763 121 23445555555443 12222 34489999999
Q ss_pred cchhhhhhccCceEEEEcCCccccCh----hhHHHHHhhcc--ceEEEEcChHHHHH--HHh----hcccccCCchHHHH
Q 021362 216 PVEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFD--EKWFIEVDLDTAMQ--RVL----KRHISTGKPPDVAK 283 (313)
Q Consensus 216 Rv~ia~al~~~ar~Li~d~~~lllDE----~~~~~l~~l~~--~~i~vtHd~~~~~~--rv~----griv~~G~~~ev~~ 283 (313)
|++||||++.++++|++|+++..||+ .+.+.|.++.. ..|++||+++.+.. |++ |++++.|+.+++..
T Consensus 601 ri~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~ii~l~~G~i~~~g~~~~l~~ 680 (694)
T TIGR01846 601 RIAIARALVGNPRILIFDEATSALDYESEALIMRNMREICRGRTVIIIAHRLSTVRACDRIIVLEKGQIAESGRHEELLA 680 (694)
T ss_pred HHHHHHHHHhCCCEEEEECCCcCCCHHHHHHHHHHHHHHhCCCEEEEEeCChHHHHhCCEEEEEeCCEEEEeCCHHHHHH
Confidence 99999999999999999999999999 45566666533 24799999999876 655 99999999988865
Q ss_pred H
Q 021362 284 W 284 (313)
Q Consensus 284 ~ 284 (313)
.
T Consensus 681 ~ 681 (694)
T TIGR01846 681 L 681 (694)
T ss_pred c
Confidence 4
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. |
| >TIGR01192 chvA glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.6e-30 Score=259.07 Aligned_cols=193 Identities=16% Similarity=0.131 Sum_probs=150.7
Q ss_pred EEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCC--------
Q 021362 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP-------- 148 (313)
Q Consensus 77 ~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~-------- 148 (313)
.|+++|+++.|++.. .+|+|+||++++|++++|+||||||||||+++|+|+++ |++|+|.++|.+.
T Consensus 334 ~i~~~~v~~~y~~~~---~~l~~i~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~---~~~G~i~~~g~~~~~~~~~~~ 407 (585)
T TIGR01192 334 AVEFRHITFEFANSS---QGVFDVSFEAKAGQTVAIVGPTGAGKTTLINLLQRVYD---PTVGQILIDGIDINTVTRESL 407 (585)
T ss_pred eEEEEEEEEECCCCC---ccccceeEEEcCCCEEEEECCCCCCHHHHHHHHccCCC---CCCCEEEECCEEhhhCCHHHH
Confidence 599999999997521 28999999999999999999999999999999999999 9999999999763
Q ss_pred CCeEEEEecCCCCCCcccCCcccChHHHHHhcCCCCCccHHHHHHHHHHhh---------cCC----CccCCCCCCcCCC
Q 021362 149 PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLR---------NQG----SVYAPSFDHGVGD 215 (313)
Q Consensus 149 ~~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~~~~~~~~~~~~l~~l~---------~~~----~~~~~~LSgG~kq 215 (313)
++.++|++|+++.+. .|++||+.++. +. ...+.+.+.++..+ .+. ......|||||||
T Consensus 408 ~~~i~~v~q~~~lf~---~ti~~Ni~~~~-----~~-~~~~~~~~a~~~~~~~~~i~~l~~g~~t~~~~~~~~LSgGq~q 478 (585)
T TIGR01192 408 RKSIATVFQDAGLFN---RSIRENIRLGR-----EG-ATDEEVYEAAKAAAAHDFILKRSNGYDTLVGERGNRLSGGERQ 478 (585)
T ss_pred HhheEEEccCCccCc---ccHHHHHhcCC-----CC-CCHHHHHHHHHHhCcHHHHHhccccccchhcCCCCCCCHHHHH
Confidence 246999999976543 59999997642 21 12233333333221 111 2344589999999
Q ss_pred cchhhhhhccCceEEEEcCCccccCh----hhHHHHHhhcc--ceEEEEcChHHHHH--HHh----hcccccCCchHHHH
Q 021362 216 PVEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFD--EKWFIEVDLDTAMQ--RVL----KRHISTGKPPDVAK 283 (313)
Q Consensus 216 Rv~ia~al~~~ar~Li~d~~~lllDE----~~~~~l~~l~~--~~i~vtHd~~~~~~--rv~----griv~~G~~~ev~~ 283 (313)
|++||++++.++++|++|+++..||. .+.+.|.++.. ..|+|||+++.+.. +++ |++++.|+.+++.+
T Consensus 479 rl~lARall~~p~ililDEpts~LD~~~~~~i~~~l~~~~~~~tvI~isH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~ 558 (585)
T TIGR01192 479 RLAIARAILKNAPILVLDEATSALDVETEARVKNAIDALRKNRTTFIIAHRLSTVRNADLVLFLDQGRLIEKGSFQELIQ 558 (585)
T ss_pred HHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHhCCCEEEEEEcChHHHHcCCEEEEEECCEEEEECCHHHHHH
Confidence 99999999999999999999999999 44455555432 24799999999866 555 99999999888865
Q ss_pred H
Q 021362 284 W 284 (313)
Q Consensus 284 ~ 284 (313)
.
T Consensus 559 ~ 559 (585)
T TIGR01192 559 K 559 (585)
T ss_pred C
Confidence 3
|
This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related. |
| >PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.1e-30 Score=258.01 Aligned_cols=193 Identities=12% Similarity=0.133 Sum_probs=152.2
Q ss_pred EEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCC--------
Q 021362 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP-------- 148 (313)
Q Consensus 77 ~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~-------- 148 (313)
-|+++++++.|+.. ...+|+|+||++++|++++|+||||||||||+++|+|+++ |++|+|.++|++.
T Consensus 313 ~I~~~~v~~~y~~~--~~~~l~~i~~~i~~G~~~~ivG~sGsGKSTLl~ll~g~~~---p~~G~i~~~g~~~~~~~~~~~ 387 (569)
T PRK10789 313 ELDVNIRQFTYPQT--DHPALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRHFD---VSEGDIRFHDIPLTKLQLDSW 387 (569)
T ss_pred cEEEEEEEEECCCC--CCccccCeeEEECCCCEEEEECCCCCCHHHHHHHHhcccC---CCCCEEEECCEEHhhCCHHHH
Confidence 48999999999742 1238999999999999999999999999999999999999 9999999999763
Q ss_pred CCeEEEEecCCCCCCcccCCcccChHHHHHhcCCCCCccHHHHHHHHHHhhc---------CCC----ccCCCCCCcCCC
Q 021362 149 PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN---------QGS----VYAPSFDHGVGD 215 (313)
Q Consensus 149 ~~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~~~~~~~~~~~~l~~l~~---------~~~----~~~~~LSgG~kq 215 (313)
++.++|++|+++.+. -|++||+.++. +. ...+.+.++++..+. +.+ .....|||||||
T Consensus 388 ~~~i~~v~q~~~lf~---~ti~~Ni~~~~-----~~-~~~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSgGq~q 458 (569)
T PRK10789 388 RSRLAVVSQTPFLFS---DTVANNIALGR-----PD-ATQQEIEHVARLASVHDDILRLPQGYDTEVGERGVMLSGGQKQ 458 (569)
T ss_pred HhheEEEccCCeecc---ccHHHHHhcCC-----CC-CCHHHHHHHHHHcCCHHHHHhCcCcccceecCCCCcCCHHHHH
Confidence 246999999976543 49999996541 11 233444455544331 112 234489999999
Q ss_pred cchhhhhhccCceEEEEcCCccccCh----hhHHHHHhhcc--ceEEEEcChHHHHH--HHh----hcccccCCchHHHH
Q 021362 216 PVEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFD--EKWFIEVDLDTAMQ--RVL----KRHISTGKPPDVAK 283 (313)
Q Consensus 216 Rv~ia~al~~~ar~Li~d~~~lllDE----~~~~~l~~l~~--~~i~vtHd~~~~~~--rv~----griv~~G~~~ev~~ 283 (313)
|++||++++.+++++++|+++..||. .+++.|+++.+ ..+++||+++.+.. |++ |++++.|+.+++.+
T Consensus 459 Ri~lARall~~~~illlDEpts~LD~~~~~~i~~~l~~~~~~~tii~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~ 538 (569)
T PRK10789 459 RISIARALLLNAEILILDDALSAVDGRTEHQILHNLRQWGEGRTVIISAHRLSALTEASEILVMQHGHIAQRGNHDQLAQ 538 (569)
T ss_pred HHHHHHHHhcCCCEEEEECccccCCHHHHHHHHHHHHHHhCCCEEEEEecchhHHHcCCEEEEEeCCEEEEecCHHHHHH
Confidence 99999999999999999999999999 45555555533 24799999988776 655 99999999888764
|
|
| >PLN03073 ABC transporter F family; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.7e-29 Score=256.46 Aligned_cols=190 Identities=15% Similarity=0.126 Sum_probs=148.2
Q ss_pred cEEEEccceEEccc-cccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCCCCeEEE
Q 021362 76 PVVEARCMDEVYDA-LAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATV 154 (313)
Q Consensus 76 ~~l~~~~l~~~y~~-~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~~~~i~~ 154 (313)
++|+++|+++.|++ .. +|+|+||+|++|++++|+||||||||||+|+|+|+++ |++|+|.+++. ..++|
T Consensus 507 ~~L~~~~ls~~y~~~~~----il~~vsl~i~~Ge~i~LvG~NGsGKSTLLk~L~Gll~---p~~G~I~~~~~---~~igy 576 (718)
T PLN03073 507 PIISFSDASFGYPGGPL----LFKNLNFGIDLDSRIAMVGPNGIGKSTILKLISGELQ---PSSGTVFRSAK---VRMAV 576 (718)
T ss_pred ceEEEEeeEEEeCCCCe----eEeccEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC---CCCceEEECCc---eeEEE
Confidence 57999999999964 34 8999999999999999999999999999999999999 99999998753 46999
Q ss_pred EecCCCCCCcccCCcccChHHHHHhcCCCCCccHHHHHHHHHHhhcC---CCccCCCCCCcCCCcchhhhhhccCceEEE
Q 021362 155 LPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ---GSVYAPSFDHGVGDPVEDDILVGLQHKVVI 231 (313)
Q Consensus 155 v~qd~~~~~~~~ltv~e~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~---~~~~~~~LSgG~kqRv~ia~al~~~ar~Li 231 (313)
++|+.. . .+++.++..+..... .+ ....+++.++|+.++.. .++++.+||||||||++||++++.++++|+
T Consensus 577 v~Q~~~--~--~l~~~~~~~~~~~~~-~~-~~~~~~i~~~L~~~gl~~~~~~~~~~~LSgGqkqRvaLAraL~~~p~lLL 650 (718)
T PLN03073 577 FSQHHV--D--GLDLSSNPLLYMMRC-FP-GVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHILL 650 (718)
T ss_pred Eecccc--c--cCCcchhHHHHHHHh-cC-CCCHHHHHHHHHHCCCChHHhcCCccccCHHHHHHHHHHHHHhcCCCEEE
Confidence 999842 1 255666644332111 11 12346678889998853 356778999999999999999999999999
Q ss_pred EcCCccccChhhH----HHHHhhccceEEEEcChHHHHH---HHh----hccc-ccCCchHH
Q 021362 232 VDGNYLFLDGGVW----KDVSSMFDEKWFIEVDLDTAMQ---RVL----KRHI-STGKPPDV 281 (313)
Q Consensus 232 ~d~~~lllDE~~~----~~l~~l~~~~i~vtHd~~~~~~---rv~----griv-~~G~~~ev 281 (313)
+|+|+..||.... +.+.+.....|+||||++++.. |++ |+++ ..|...+.
T Consensus 651 LDEPT~~LD~~s~~~l~~~L~~~~gtvIivSHd~~~i~~~~drv~~l~~G~i~~~~g~~~~~ 712 (718)
T PLN03073 651 LDEPSNHLDLDAVEALIQGLVLFQGGVLMVSHDEHLISGSVDELWVVSEGKVTPFHGTFHDY 712 (718)
T ss_pred EcCCCCCCCHHHHHHHHHHHHHcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCCHHHH
Confidence 9999999999433 3333332235799999999886 444 7777 56766554
|
|
| >cd03291 ABCC_CFTR1 The CFTR subfamily domain 1 | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.9e-29 Score=231.97 Aligned_cols=185 Identities=10% Similarity=0.089 Sum_probs=140.1
Q ss_pred ccEEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCCCCeEEE
Q 021362 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATV 154 (313)
Q Consensus 75 m~~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~~~~i~~ 154 (313)
-+.|+++|+++. +.. +|+++||+|++|++++|+||||||||||+++|+|+++ |++|+|.++| .++|
T Consensus 37 ~~~l~i~nls~~--~~~----vL~~vs~~i~~Ge~~~liG~NGsGKSTLl~~I~Gl~~---p~~G~I~i~g-----~i~y 102 (282)
T cd03291 37 DNNLFFSNLCLV--GAP----VLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGELE---PSEGKIKHSG-----RISF 102 (282)
T ss_pred CCeEEEEEEEEe--ccc----ceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCcEEEECC-----EEEE
Confidence 347999999985 334 9999999999999999999999999999999999999 9999999987 4899
Q ss_pred EecCCCCCCcccCCcccChHHHHHhcCCCCCccHHHHHHHHHHhh---------cC----CCccCCCCCCcCCCcchhhh
Q 021362 155 LPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLR---------NQ----GSVYAPSFDHGVGDPVEDDI 221 (313)
Q Consensus 155 v~qd~~~~~~~~ltv~e~~~~~~~~~~~~~~~~~~~~~~~l~~l~---------~~----~~~~~~~LSgG~kqRv~ia~ 221 (313)
++|++.. +. .|+.+|+.+.... ...++.+.++.++ .. .+..+.+||+||+||++||+
T Consensus 103 v~q~~~l-~~--~tv~enl~~~~~~-------~~~~~~~~l~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~qrv~lAr 172 (282)
T cd03291 103 SSQFSWI-MP--GTIKENIIFGVSY-------DEYRYKSVVKACQLEEDITKFPEKDNTVLGEGGITLSGGQRARISLAR 172 (282)
T ss_pred EeCcccc-cc--cCHHHHhhccccc-------CHHHHHHHHHHhCCHHHHHhccccccceecCCCCcCCHHHHHHHHHHH
Confidence 9999653 33 4899988753211 0111222222221 11 12234699999999999999
Q ss_pred hhccCceEEEEcCCccccChhhHHHHH-----hhcc--ceEEEEcChHHHHH--HHh----hcccccCCchHHHH
Q 021362 222 LVGLQHKVVIVDGNYLFLDGGVWKDVS-----SMFD--EKWFIEVDLDTAMQ--RVL----KRHISTGKPPDVAK 283 (313)
Q Consensus 222 al~~~ar~Li~d~~~lllDE~~~~~l~-----~l~~--~~i~vtHd~~~~~~--rv~----griv~~G~~~ev~~ 283 (313)
+++.++++|++|+|+..||....+.+. .+.. ..+++|||++.+.. |++ |+++..|+++++..
T Consensus 173 aL~~~p~iLiLDEPt~gLD~~~~~~l~~~ll~~~~~~~tIiiisH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 247 (282)
T cd03291 173 AVYKDADLYLLDSPFGYLDVFTEKEIFESCVCKLMANKTRILVTSKMEHLKKADKILILHEGSSYFYGTFSELQS 247 (282)
T ss_pred HHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHhhCCCEEEEEeCChHHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 999999999999999999984433332 2222 24799999998755 554 89888998887753
|
The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. |
| >PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=6.9e-30 Score=225.92 Aligned_cols=174 Identities=12% Similarity=0.074 Sum_probs=130.2
Q ss_pred cccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceee-cCCCCCCCeEEEEecCCCCCCcccCCcccChH
Q 021362 96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSF-DSQVKPPDVATVLPMDGFHLYLSQLDAMEDPK 174 (313)
Q Consensus 96 ~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~-~~g~~~~~~i~~v~qd~~~~~~~~ltv~e~~~ 174 (313)
+|+|+||+|++|++++|+||||||||||+++|+|+++ |++|+|. ++|... .+.+++..+ +.+|+.||+.
T Consensus 2 vl~~vs~~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~---~~sG~i~~~~~~~~-----~~~~~~~l~--~~ltv~enl~ 71 (213)
T PRK15177 2 VLDKTDFVMGYHEHIGILAAPGSGKTTLTRLLCGLDA---PDEGDFIGLRGDAL-----PLGANSFIL--PGLTGEENAR 71 (213)
T ss_pred eeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCcc---CCCCCEEEecCcee-----ccccccccC--CcCcHHHHHH
Confidence 7999999999999999999999999999999999999 9999997 766432 122332222 3589999999
Q ss_pred HHHHhcCCCCCccHHHHHHHHHHhh--cCCCccCCCCCCcCCCcchhhhhhccCceEEEEcCCccccChh----hHHHHH
Q 021362 175 EAHARRGAPWTFNPLLLLNCLKNLR--NQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGG----VWKDVS 248 (313)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~l~~l~--~~~~~~~~~LSgG~kqRv~ia~al~~~ar~Li~d~~~lllDE~----~~~~l~ 248 (313)
+....++.... +....+++.++ ...+.++.+||+|||||+++|++++.+++++++|+|...+|.. +++.+.
T Consensus 72 ~~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~~~~lS~G~~qrv~la~al~~~p~llllDEP~~~lD~~~~~~~~~~l~ 148 (213)
T PRK15177 72 MMASLYGLDGD---EFSHFCYQLTQLEQCYTDRVSEYSVTMKTHLAFAINLLLPCRLYIADGKLYTGDNATQLRMQAALA 148 (213)
T ss_pred HHHHHcCCCHH---HHHHHHHHHhChhHHhhchHhhcCHHHHHHHHHHHHHhcCCCEEEECCCCccCCHHHHHHHHHHHH
Confidence 87665543221 11122223333 3446677899999999999999999999999999998888983 333343
Q ss_pred hh-cc-ceEEEEcChHHHHH---HHh----hcccccCCchHHH
Q 021362 249 SM-FD-EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVA 282 (313)
Q Consensus 249 ~l-~~-~~i~vtHd~~~~~~---rv~----griv~~G~~~ev~ 282 (313)
+. .+ ..+++|||++++.. +++ |+++..|+.++..
T Consensus 149 ~~~~~~~ii~vsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 191 (213)
T PRK15177 149 CQLQQKGLIVLTHNPRLIKEHCHAFGVLLHGKITMCEDLAQAT 191 (213)
T ss_pred HHhhCCcEEEEECCHHHHHHhcCeeEEEECCeEEEeCCHHHHH
Confidence 22 22 24799999999875 555 8999888877763
|
|
| >PLN03130 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=6.3e-30 Score=279.98 Aligned_cols=193 Identities=16% Similarity=0.158 Sum_probs=158.0
Q ss_pred EEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCCC-------
Q 021362 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPP------- 149 (313)
Q Consensus 77 ~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~~------- 149 (313)
-|+++||+++|.... .++|+|+||+|++||.+||+|++|||||||+++|.|++. |++|+|.++|.+..
T Consensus 1237 ~I~f~nVsf~Y~~~~--~~VL~~is~~I~~GekVaIVGrSGSGKSTLl~lL~rl~~---p~~G~I~IDG~dI~~i~l~~L 1311 (1622)
T PLN03130 1237 SIKFEDVVLRYRPEL--PPVLHGLSFEISPSEKVGIVGRTGAGKSSMLNALFRIVE---LERGRILIDGCDISKFGLMDL 1311 (1622)
T ss_pred cEEEEEEEEEeCCCC--CceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCcCC---CCCceEEECCEecccCCHHHH
Confidence 499999999996421 239999999999999999999999999999999999999 99999999998743
Q ss_pred -CeEEEEecCCCCCCcccCCcccChHHHHHhcCCCCCccHHHHHHHHHHhh---------cCCCcc----CCCCCCcCCC
Q 021362 150 -DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLR---------NQGSVY----APSFDHGVGD 215 (313)
Q Consensus 150 -~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~~~~~~~~~~~~l~~l~---------~~~~~~----~~~LSgG~kq 215 (313)
+.+++|+||++.+. -|+++|+.... ....+.+.++++..+ .+.+.. ...|||||||
T Consensus 1312 R~~IsiVpQdp~LF~---GTIreNLd~~~-------~~tdeei~~Al~~a~l~~~I~~lp~GLdt~Vge~G~nLSgGQrQ 1381 (1622)
T PLN03130 1312 RKVLGIIPQAPVLFS---GTVRFNLDPFN-------EHNDADLWESLERAHLKDVIRRNSLGLDAEVSEAGENFSVGQRQ 1381 (1622)
T ss_pred HhccEEECCCCcccc---ccHHHHhCcCC-------CCCHHHHHHHHHHcCcHHHHHhCccccCccccCCCCCCCHHHHH
Confidence 56999999987654 49999996531 123455666666544 123332 2389999999
Q ss_pred cchhhhhhccCceEEEEcCCccccCh----hhHHHHHhhccc--eEEEEcChHHHHH--HHh----hcccccCCchHHHH
Q 021362 216 PVEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFDE--KWFIEVDLDTAMQ--RVL----KRHISTGKPPDVAK 283 (313)
Q Consensus 216 Rv~ia~al~~~ar~Li~d~~~lllDE----~~~~~l~~l~~~--~i~vtHd~~~~~~--rv~----griv~~G~~~ev~~ 283 (313)
|++||||+++++++|++|+.+.-+|. .+.+.|++.++. .|+|+|.++.+.. ||+ |++++.|+++++++
T Consensus 1382 rlaLARALLr~p~ILILDEATSaLD~~Te~~Iq~~I~~~~~~~TvI~IAHRL~tI~~~DrIlVLd~G~IvE~Gt~~eLl~ 1461 (1622)
T PLN03130 1382 LLSLARALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILVLDAGRVVEFDTPENLLS 1461 (1622)
T ss_pred HHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEeCChHHHHhCCEEEEEECCEEEEeCCHHHHHh
Confidence 99999999999999999999999998 566666666543 4799999999988 766 99999999999875
Q ss_pred H
Q 021362 284 W 284 (313)
Q Consensus 284 ~ 284 (313)
.
T Consensus 1462 ~ 1462 (1622)
T PLN03130 1462 N 1462 (1622)
T ss_pred C
Confidence 3
|
|
| >PLN03232 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=5.3e-30 Score=279.91 Aligned_cols=193 Identities=15% Similarity=0.146 Sum_probs=157.1
Q ss_pred EEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCC--------
Q 021362 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP-------- 148 (313)
Q Consensus 77 ~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~-------- 148 (313)
.|+++||+++|+.. ..++|+|+||+|++||.+||+|++|||||||+++|.|++. |++|+|.++|.+.
T Consensus 1234 ~I~f~nVsf~Y~~~--~~~vL~~isl~I~~GekvaIVG~SGSGKSTL~~lL~rl~~---p~~G~I~IdG~di~~i~~~~l 1308 (1495)
T PLN03232 1234 SIKFEDVHLRYRPG--LPPVLHGLSFFVSPSEKVGVVGRTGAGKSSMLNALFRIVE---LEKGRIMIDDCDVAKFGLTDL 1308 (1495)
T ss_pred cEEEEEEEEEECCC--CCcccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCc---CCCceEEECCEEhhhCCHHHH
Confidence 49999999999542 1239999999999999999999999999999999999999 9999999999874
Q ss_pred CCeEEEEecCCCCCCcccCCcccChHHHHHhcCCCCCccHHHHHHHHHHhh---------cCCCc----cCCCCCCcCCC
Q 021362 149 PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLR---------NQGSV----YAPSFDHGVGD 215 (313)
Q Consensus 149 ~~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~~~~~~~~~~~~l~~l~---------~~~~~----~~~~LSgG~kq 215 (313)
++.+++|+||++.+. -|+++|+.+.. ....+.+.++++..+ .+.+. ....|||||||
T Consensus 1309 R~~i~iVpQdp~LF~---gTIr~NL~~~~-------~~sdeei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQ 1378 (1495)
T PLN03232 1309 RRVLSIIPQSPVLFS---GTVRFNIDPFS-------EHNDADLWEALERAHIKDVIDRNPFGLDAEVSEGGENFSVGQRQ 1378 (1495)
T ss_pred HhhcEEECCCCeeeC---ccHHHHcCCCC-------CCCHHHHHHHHHHcCCHHHHHhCcCCCCceecCCCCCCCHHHHH
Confidence 346999999987654 49999996531 223455666666544 12232 23389999999
Q ss_pred cchhhhhhccCceEEEEcCCccccCh----hhHHHHHhhccc--eEEEEcChHHHHH--HHh----hcccccCCchHHHH
Q 021362 216 PVEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFDE--KWFIEVDLDTAMQ--RVL----KRHISTGKPPDVAK 283 (313)
Q Consensus 216 Rv~ia~al~~~ar~Li~d~~~lllDE----~~~~~l~~l~~~--~i~vtHd~~~~~~--rv~----griv~~G~~~ev~~ 283 (313)
|++||||+++++++|++||++.-+|. .+.+.|++..+. .|+|+|.++.+.. ||+ |++++.|+++++++
T Consensus 1379 rlaLARALLr~~~ILILDEATSaLD~~Te~~Iq~~L~~~~~~~TvI~IAHRl~ti~~~DrIlVL~~G~ivE~Gt~~eLl~ 1458 (1495)
T PLN03232 1379 LLSLARALLRRSKILVLDEATASVDVRTDSLIQRTIREEFKSCTMLVIAHRLNTIIDCDKILVLSSGQVLEYDSPQELLS 1458 (1495)
T ss_pred HHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEeCCHHHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 99999999999999999999999999 456666666432 4799999999988 766 99999999999875
Q ss_pred H
Q 021362 284 W 284 (313)
Q Consensus 284 ~ 284 (313)
.
T Consensus 1459 ~ 1459 (1495)
T PLN03232 1459 R 1459 (1495)
T ss_pred C
Confidence 3
|
|
| >cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor | Back alignment and domain information |
|---|
Probab=99.96 E-value=9.9e-30 Score=229.62 Aligned_cols=157 Identities=14% Similarity=0.115 Sum_probs=123.2
Q ss_pred ccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCCCCeEEEEecCCCCCCcccCCcccChHHH
Q 021362 97 TSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEA 176 (313)
Q Consensus 97 L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~~~~i~~v~qd~~~~~~~~ltv~e~~~~~ 176 (313)
|+..+++|++||+++|+||||||||||+++|+|+++ |++|+|.++|. .++|++|+....+ .+|+.|++.+.
T Consensus 15 l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~L~G~~~---p~~G~i~~~g~----~i~~~~q~~~~~~--~~tv~e~l~~~ 85 (246)
T cd03237 15 LEVEGGSISESEVIGILGPNGIGKTTFIKMLAGVLK---PDEGDIEIELD----TVSYKPQYIKADY--EGTVRDLLSSI 85 (246)
T ss_pred EEEecCCcCCCCEEEEECCCCCCHHHHHHHHhCCCc---CCCCeEEECCc----eEEEecccccCCC--CCCHHHHHHHH
Confidence 333344445899999999999999999999999999 99999999885 6899999865333 37999998664
Q ss_pred HHhcCCCCCccHHHHHHHHHHhhc--CCCccCCCCCCcCCCcchhhhhhccCceEEEEcCCccccCh----hhHHHHHhh
Q 021362 177 HARRGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSM 250 (313)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~l~~l~~--~~~~~~~~LSgG~kqRv~ia~al~~~ar~Li~d~~~lllDE----~~~~~l~~l 250 (313)
....+ .......++++.++. ..++++.+|||||+||++||++++.+++++++|+|+..||. .+.+.|+++
T Consensus 86 ~~~~~----~~~~~~~~~l~~l~l~~~~~~~~~~LSgGe~qrv~iaraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~~ 161 (246)
T cd03237 86 TKDFY----THPYFKTEIAKPLQIEQILDREVPELSGGELQRVAIAACLSKDADIYLLDEPSAYLDVEQRLMASKVIRRF 161 (246)
T ss_pred hhhcc----ccHHHHHHHHHHcCCHHHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHH
Confidence 33221 112345677777773 34567789999999999999999999999999999999999 455566665
Q ss_pred cc----ceEEEEcChHHHHH
Q 021362 251 FD----EKWFIEVDLDTAMQ 266 (313)
Q Consensus 251 ~~----~~i~vtHd~~~~~~ 266 (313)
.+ ..|+||||++++..
T Consensus 162 ~~~~~~tiiivsHd~~~~~~ 181 (246)
T cd03237 162 AENNEKTAFVVEHDIIMIDY 181 (246)
T ss_pred HHhcCCEEEEEeCCHHHHHH
Confidence 42 24799999999876
|
The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. |
| >COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.8e-30 Score=209.91 Aligned_cols=182 Identities=14% Similarity=0.057 Sum_probs=147.6
Q ss_pred EEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCC------CC
Q 021362 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP------PD 150 (313)
Q Consensus 77 ~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~------~~ 150 (313)
++.++|++...++.. .|.++||+|.+|||+.|+||||||||||+.-+.|.+...+.-+|++++++++. .+
T Consensus 2 ~l~l~nvsl~l~g~c----LLa~~n~Tia~GeivtlMGPSGcGKSTLls~~~G~La~~F~~~G~~~l~~~~l~~lPa~qR 77 (213)
T COG4136 2 MLCLKNVSLRLPGSC----LLANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQRLDMLPAAQR 77 (213)
T ss_pred ceeeeeeeecCCCce----EEEeeeEEecCCcEEEEECCCCccHHHHHHHHHhhcccCcceeeEEEECCeeccccchhhh
Confidence 578999999999888 99999999999999999999999999999999999985555689999999773 35
Q ss_pred eEEEEecCCCCCCcccCCcccChHHHHHhcCCCCCccHHHHHHHHHHhhcC--CCccCCCCCCcCCCcchhhhhhccCce
Q 021362 151 VATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGLQHK 228 (313)
Q Consensus 151 ~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~~~~~LSgG~kqRv~ia~al~~~ar 228 (313)
.+|++|||+..++ +++|.+|+.|..... ......+..+...|++.+.. .++.+.+||||||-||++-+++...++
T Consensus 78 q~GiLFQD~lLFp--hlsVg~Nl~fAlp~~-~KG~aRr~~a~aAL~~~gL~g~f~~dP~tlSGGQrARvaL~R~Lla~Pk 154 (213)
T COG4136 78 QIGILFQDALLFP--HLSVGQNLLFALPAT-LKGNARRNAANAALERSGLDGAFHQDPATLSGGQRARVALLRALLAQPK 154 (213)
T ss_pred heeeeeccccccc--ccccccceEEecCcc-cccHHHHhhHHHHHHHhccchhhhcChhhcCcchHHHHHHHHHHHhCcc
Confidence 6999999977555 599999998864321 11223345577888988833 355666999999999999999999999
Q ss_pred EEEEcCCccccChhhHHHHHhhcc--------ceEEEEcChHHHH
Q 021362 229 VVIVDGNYLFLDGGVWKDVSSMFD--------EKWFIEVDLDTAM 265 (313)
Q Consensus 229 ~Li~d~~~lllDE~~~~~l~~l~~--------~~i~vtHd~~~~~ 265 (313)
++++|+|+.-||..+.+..+++.- -+++||||...+.
T Consensus 155 ~lLLDEPFS~LD~ALR~qfR~wVFs~~r~agiPtv~VTHD~~Dvp 199 (213)
T COG4136 155 ALLLDEPFSRLDVALRDQFRQWVFSEVRAAGIPTVQVTHDLQDVP 199 (213)
T ss_pred eeeeCCchhHHHHHHHHHHHHHHHHHHHhcCCCeEEEecccccCC
Confidence 999999999999866666665531 1479999998775
|
|
| >TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.3e-30 Score=240.92 Aligned_cols=167 Identities=17% Similarity=0.174 Sum_probs=135.0
Q ss_pred EECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCC------CCeEEEEecCCCCCCcccCCcccChHHHHHhcCCCCC
Q 021362 112 LAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP------PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWT 185 (313)
Q Consensus 112 l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~------~~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~~~ 185 (313)
|+||||||||||+++|+|+++ |++|+|.++|.+. .+.++|++|+...++ .+|+.+|+.+....++.+..
T Consensus 1 l~G~nGsGKSTLl~~iaGl~~---p~~G~I~i~g~~i~~~~~~~~~i~~v~q~~~l~~--~~tv~enl~~~~~~~~~~~~ 75 (325)
T TIGR01187 1 LLGPSGCGKTTLLRLLAGFEQ---PDSGSIMLDGEDVTNVPPHLRHINMVFQSYALFP--HMTVEENVAFGLKMRKVPRA 75 (325)
T ss_pred CcCCCCCCHHHHHHHHHCCCC---CCceEEEECCEECCCCCHHHCCEEEEecCccccC--CCcHHHHHHHHHhhcCCCHH
Confidence 689999999999999999999 9999999999653 235999999965433 58999999987654443322
Q ss_pred ccHHHHHHHHHHhhc--CCCccCCCCCCcCCCcchhhhhhccCceEEEEcCCccccCh----hhHHHHHhhcc----ceE
Q 021362 186 FNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFD----EKW 255 (313)
Q Consensus 186 ~~~~~~~~~l~~l~~--~~~~~~~~LSgG~kqRv~ia~al~~~ar~Li~d~~~lllDE----~~~~~l~~l~~----~~i 255 (313)
...+++.++++.++. ..++++.+||||||||++||++++.++++|++|+|+..||. .+++.|+++.+ ..|
T Consensus 76 ~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qRvalaraL~~~p~lllLDEP~s~LD~~~~~~l~~~l~~l~~~~g~tii 155 (325)
T TIGR01187 76 EIKPRVLEALRLVQLEEFADRKPHQLSGGQQQRVALARALVFKPKILLLDEPLSALDKKLRDQMQLELKTIQEQLGITFV 155 (325)
T ss_pred HHHHHHHHHHHHcCCcchhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEE
Confidence 334567788888874 34667789999999999999999999999999999999999 45555555543 247
Q ss_pred EEEcChHHHHH---HHh----hcccccCCchHHHH
Q 021362 256 FIEVDLDTAMQ---RVL----KRHISTGKPPDVAK 283 (313)
Q Consensus 256 ~vtHd~~~~~~---rv~----griv~~G~~~ev~~ 283 (313)
++|||++++.. |++ |+++..|+++++..
T Consensus 156 ivTHd~~e~~~~~d~i~vl~~G~i~~~g~~~~~~~ 190 (325)
T TIGR01187 156 FVTHDQEEAMTMSDRIAIMRKGKIAQIGTPEEIYE 190 (325)
T ss_pred EEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 99999999876 555 99999999988754
|
This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included). |
| >TIGR02857 CydD thiol reductant ABC exporter, CydD subunit | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.6e-29 Score=251.71 Aligned_cols=176 Identities=18% Similarity=0.143 Sum_probs=139.3
Q ss_pred EEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCCC-------
Q 021362 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPP------- 149 (313)
Q Consensus 77 ~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~~------- 149 (313)
-|+++|+++.|++.. .++|+|+||+|++|+.++|+||||||||||+|+|+|+++ |++|+|.++|.+..
T Consensus 320 ~i~~~~v~f~y~~~~--~~il~~i~l~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~---~~~G~I~~~g~~i~~~~~~~l 394 (529)
T TIGR02857 320 SLEFSGLSVAYPGRR--APALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVD---PTEGSIAVNGVPLADADADSW 394 (529)
T ss_pred eEEEEEEEEECCCCC--cccccceeEEECCCCEEEEECCCCCCHHHHHHHHhcCCC---CCCcEEEECCEehhhCCHHHH
Confidence 499999999997531 238999999999999999999999999999999999999 99999999997642
Q ss_pred -CeEEEEecCCCCCCcccCCcccChHHHHHhcCCCCCccHHHHHHHHHHhhc---------CCCc----cCCCCCCcCCC
Q 021362 150 -DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN---------QGSV----YAPSFDHGVGD 215 (313)
Q Consensus 150 -~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~~~~~~~~~~~~l~~l~~---------~~~~----~~~~LSgG~kq 215 (313)
+.++|++|+++.+. .|++||+.++. +. ...+++.++++..+. +.+. ....|||||||
T Consensus 395 r~~i~~v~Q~~~lf~---~ti~~Ni~~~~-----~~-~~~~~i~~a~~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGq~q 465 (529)
T TIGR02857 395 RDQIAWVPQHPFLFA---GTIAENIRLAR-----PD-ASDAEIRRALERAGLDEFVAALPQGLDTLIGEGGAGLSGGQAQ 465 (529)
T ss_pred HhheEEEcCCCcccC---cCHHHHHhccC-----CC-CCHHHHHHHHHHcCcHHHHHhCcccccchhccccccCCHHHHH
Confidence 35999999976553 59999997642 11 133455555555441 2222 33489999999
Q ss_pred cchhhhhhccCceEEEEcCCccccCh----hhHHHHHhhcc--ceEEEEcChHHHHH
Q 021362 216 PVEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFD--EKWFIEVDLDTAMQ 266 (313)
Q Consensus 216 Rv~ia~al~~~ar~Li~d~~~lllDE----~~~~~l~~l~~--~~i~vtHd~~~~~~ 266 (313)
|++|||+++++++++++|+++.-+|+ .+.+.+.++.. ..|+|||+++....
T Consensus 466 ri~laRal~~~~~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~ 522 (529)
T TIGR02857 466 RLALARAFLRDAPLLLLDEPTAHLDAETEALVTEALRALAQGRTVLLVTHRLALAER 522 (529)
T ss_pred HHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHHh
Confidence 99999999999999999999999999 45555555532 24799999987643
|
Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD |
| >COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.96 E-value=6.1e-29 Score=215.97 Aligned_cols=202 Identities=18% Similarity=0.103 Sum_probs=150.9
Q ss_pred ccEEEEccceEEcccc-ccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCCCC---
Q 021362 75 IPVVEARCMDEVYDAL-AQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPD--- 150 (313)
Q Consensus 75 m~~l~~~~l~~~y~~~-~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~~~--- 150 (313)
|.+|+++||+...+++ . +|++|||+|++||+.+|+||||||||||.++|+|.-. -.+++|+|.++|+++..
T Consensus 1 m~~L~I~dLhv~v~~~ke----ILkgvnL~v~~GEvhaiMGPNGsGKSTLa~~i~G~p~-Y~Vt~G~I~~~GedI~~l~~ 75 (251)
T COG0396 1 MMMLEIKDLHVEVEGKKE----ILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPK-YEVTEGEILFDGEDILELSP 75 (251)
T ss_pred CceeEEeeeEEEecCchh----hhcCcceeEcCCcEEEEECCCCCCHHHHHHHHhCCCC-ceEecceEEECCcccccCCH
Confidence 4589999999999885 6 9999999999999999999999999999999999852 01899999999988432
Q ss_pred ------eEEEEecCCCCCCcccCCcccChHHHHHhc-CCC--CCccHHHHHHHHHHhhc---CCCccCC-CCCCcCCCcc
Q 021362 151 ------VATVLPMDGFHLYLSQLDAMEDPKEAHARR-GAP--WTFNPLLLLNCLKNLRN---QGSVYAP-SFDHGVGDPV 217 (313)
Q Consensus 151 ------~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~-~~~--~~~~~~~~~~~l~~l~~---~~~~~~~-~LSgG~kqRv 217 (313)
-+..-||.|.-++ ..++.+.+....... +.. ......++.+.++.++. ..++++. -||||||+|.
T Consensus 76 ~ERAr~GifLafQ~P~ei~--GV~~~~fLr~a~n~~~~~~~~~~~~~~~~~e~~~~l~~~~~~l~R~vN~GFSGGEkKR~ 153 (251)
T COG0396 76 DERARAGIFLAFQYPVEIP--GVTNSDFLRAAMNARRGARGILPEFIKELKEKAELLGLDEEFLERYVNEGFSGGEKKRN 153 (251)
T ss_pred hHHHhcCCEEeecCCccCC--CeeHHHHHHHHHHhhhccccccHHHHHHHHHHHHHcCCCHHHhhcccCCCcCcchHHHH
Confidence 2566788876544 477777776655432 211 12345567778888873 4566777 9999999999
Q ss_pred hhhhhhccCceEEEEcCCccccChh----hHHHHHhhccc---eEEEEcChHHHHH------HHh--hcccccCCchHHH
Q 021362 218 EDDILVGLQHKVVIVDGNYLFLDGG----VWKDVSSMFDE---KWFIEVDLDTAMQ------RVL--KRHISTGKPPDVA 282 (313)
Q Consensus 218 ~ia~al~~~ar~Li~d~~~lllDE~----~~~~l~~l~~~---~i~vtHd~~~~~~------rv~--griv~~G~~~ev~ 282 (313)
.|+++++..++..|+|++=..||-. +-+-+..+.+. .++|||....+.. .++ ||++..|.+ +++
T Consensus 154 EilQ~~~lePkl~ILDE~DSGLDIdalk~V~~~i~~lr~~~~~~liITHy~rll~~i~pD~vhvl~~GrIv~sG~~-el~ 232 (251)
T COG0396 154 EILQLLLLEPKLAILDEPDSGLDIDALKIVAEGINALREEGRGVLIITHYQRLLDYIKPDKVHVLYDGRIVKSGDP-ELA 232 (251)
T ss_pred HHHHHHhcCCCEEEecCCCcCccHHHHHHHHHHHHHHhcCCCeEEEEecHHHHHhhcCCCEEEEEECCEEEecCCH-HHH
Confidence 9977766666666666666666653 33334444443 3799999998877 233 999999999 776
Q ss_pred HH
Q 021362 283 KW 284 (313)
Q Consensus 283 ~~ 284 (313)
.+
T Consensus 233 ~~ 234 (251)
T COG0396 233 EE 234 (251)
T ss_pred HH
Confidence 54
|
|
| >TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein | Back alignment and domain information |
|---|
Probab=99.96 E-value=7.6e-30 Score=276.56 Aligned_cols=211 Identities=13% Similarity=0.068 Sum_probs=161.9
Q ss_pred cEEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCC----CCe
Q 021362 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP----PDV 151 (313)
Q Consensus 76 ~~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~----~~~ 151 (313)
.+|+++||++.|+.+.+...+|+|||+++++|++++|+||||||||||+++|+|+.+.-.|++|+|.++|++. ++.
T Consensus 758 ~~l~~~nl~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~G~sGaGKSTLL~~Lag~~~~g~~~~G~I~i~G~~~~~~~~~~ 837 (1394)
T TIGR00956 758 DIFHWRNLTYEVKIKKEKRVILNNVDGWVKPGTLTALMGASGAGKTTLLNVLAERVTTGVITGGDRLVNGRPLDSSFQRS 837 (1394)
T ss_pred ceEEEEeeEEEecCCCCCcEeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECChhhhcc
Confidence 3689999999996332233499999999999999999999999999999999999851125789999999764 346
Q ss_pred EEEEecCCCCCCcccCCcccChHHHHHhcC---CCCCccHHHHHHHHHHhhc--CCCccCC----CCCCcCCCcchhhhh
Q 021362 152 ATVLPMDGFHLYLSQLDAMEDPKEAHARRG---APWTFNPLLLLNCLKNLRN--QGSVYAP----SFDHGVGDPVEDDIL 222 (313)
Q Consensus 152 i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~---~~~~~~~~~~~~~l~~l~~--~~~~~~~----~LSgG~kqRv~ia~a 222 (313)
++|++|++.+++ .+||+||+.+....+. .+..+..+++.++++.++. ..+..+. .||||||||++||++
T Consensus 838 i~yv~Q~~~~~~--~~Tv~E~L~~~a~l~~~~~~~~~~~~~~v~~~l~~l~L~~~~d~~v~~~~~~LSgGqrqRl~Ia~a 915 (1394)
T TIGR00956 838 IGYVQQQDLHLP--TSTVRESLRFSAYLRQPKSVSKSEKMEYVEEVIKLLEMESYADAVVGVPGEGLNVEQRKRLTIGVE 915 (1394)
T ss_pred eeeecccccCCC--CCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChhhCCCeeCCCCCCCCHHHhhHHHHHHH
Confidence 899999876544 4899999998765442 1112233567888888874 3455554 799999999999999
Q ss_pred hccCce-EEEEcCCccccCh----hhHHHHHhhccc---eEEEEcChHHHH-H---HHh----h-cccccCCchHH---H
Q 021362 223 VGLQHK-VVIVDGNYLFLDG----GVWKDVSSMFDE---KWFIEVDLDTAM-Q---RVL----K-RHISTGKPPDV---A 282 (313)
Q Consensus 223 l~~~ar-~Li~d~~~lllDE----~~~~~l~~l~~~---~i~vtHd~~~~~-~---rv~----g-riv~~G~~~ev---~ 282 (313)
++.+++ +|++|||+..||. .+++.|+++.++ +|+++|+++... . |++ | ++++.|++.+. +
T Consensus 916 L~~~P~~iLlLDEPTsgLD~~~~~~i~~~L~~la~~g~tvI~t~H~~~~~~~~~~D~vl~L~~GG~iv~~G~~~~~~~~~ 995 (1394)
T TIGR00956 916 LVAKPKLLLFLDEPTSGLDSQTAWSICKLMRKLADHGQAILCTIHQPSAILFEEFDRLLLLQKGGQTVYFGDLGENSHTI 995 (1394)
T ss_pred HHcCCCeEEEEcCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHhcCEEEEEcCCCEEEEECCcccccchH
Confidence 999997 9999999999999 566777766443 479999998643 2 554 5 99999987532 3
Q ss_pred HHHHHh
Q 021362 283 KWRIEY 288 (313)
Q Consensus 283 ~~~~~~ 288 (313)
.+++..
T Consensus 996 ~~yf~~ 1001 (1394)
T TIGR00956 996 INYFEK 1001 (1394)
T ss_pred HHHHHh
Confidence 444543
|
|
| >cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth | Back alignment and domain information |
|---|
Probab=99.96 E-value=3e-29 Score=208.61 Aligned_cols=128 Identities=16% Similarity=0.143 Sum_probs=112.5
Q ss_pred EEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCCCCeEEEEec
Q 021362 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPM 157 (313)
Q Consensus 78 l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~~~~i~~v~q 157 (313)
|+++|+++.|++.. +++++||++++||+++|+||||||||||+++|+|+++ |++|+|+++|. ..++|++|
T Consensus 1 l~~~~l~~~~~~~~----~l~~~~~~~~~Ge~~~i~G~nGsGKStLl~~l~G~~~---~~~G~i~~~~~---~~i~~~~~ 70 (144)
T cd03221 1 IELENLSKTYGGKL----LLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELE---PDEGIVTWGST---VKIGYFEQ 70 (144)
T ss_pred CEEEEEEEEECCce----EEEeeEEEECCCCEEEEECCCCCCHHHHHHHHcCCCC---CCceEEEECCe---EEEEEEcc
Confidence 46899999998755 9999999999999999999999999999999999999 99999999884 35777776
Q ss_pred CCCCCCcccCCcccChHHHHHhcCCCCCccHHHHHHHHHHhhcCCCccCCCCCCcCCCcchhhhhhccCceEEEEcCCcc
Q 021362 158 DGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYL 237 (313)
Q Consensus 158 d~~~~~~~~ltv~e~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~LSgG~kqRv~ia~al~~~ar~Li~d~~~l 237 (313)
||+||+||++||++++.+++++++|+|+.
T Consensus 71 ---------------------------------------------------lS~G~~~rv~laral~~~p~illlDEP~~ 99 (144)
T cd03221 71 ---------------------------------------------------LSGGEKMRLALAKLLLENPNLLLLDEPTN 99 (144)
T ss_pred ---------------------------------------------------CCHHHHHHHHHHHHHhcCCCEEEEeCCcc
Confidence 99999999999999999999999999999
Q ss_pred ccCh----hhHHHHHhhccceEEEEcChHHHHH
Q 021362 238 FLDG----GVWKDVSSMFDEKWFIEVDLDTAMQ 266 (313)
Q Consensus 238 llDE----~~~~~l~~l~~~~i~vtHd~~~~~~ 266 (313)
.||. .+.+.++++....+++||+++++..
T Consensus 100 ~LD~~~~~~l~~~l~~~~~til~~th~~~~~~~ 132 (144)
T cd03221 100 HLDLESIEALEEALKEYPGTVILVSHDRYFLDQ 132 (144)
T ss_pred CCCHHHHHHHHHHHHHcCCEEEEEECCHHHHHH
Confidence 9998 4455555553345799999998854
|
EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions. |
| >PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.2e-29 Score=251.63 Aligned_cols=180 Identities=15% Similarity=0.133 Sum_probs=141.3
Q ss_pred EEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCCC-------
Q 021362 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPP------- 149 (313)
Q Consensus 77 ~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~~------- 149 (313)
.|+++|+++.|++.. .+|+|+||+|++|+.++|+||||||||||+++|+|+++ |++|+|.++|++..
T Consensus 322 ~i~~~~v~f~y~~~~---~~l~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~---~~~G~i~~~g~~~~~~~~~~~ 395 (547)
T PRK10522 322 TLELRNVTFAYQDNG---FSVGPINLTIKRGELLFLIGGNGSGKSTLAMLLTGLYQ---PQSGEILLDGKPVTAEQPEDY 395 (547)
T ss_pred eEEEEEEEEEeCCCC---eEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCeEEEECCEECCCCCHHHH
Confidence 599999999997421 28999999999999999999999999999999999999 99999999997643
Q ss_pred -CeEEEEecCCCCCCcccCCcccChHHHHHhcCCCCCccHHHHHHHHHHhhcCCCc-------cCCCCCCcCCCcchhhh
Q 021362 150 -DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQGSV-------YAPSFDHGVGDPVEDDI 221 (313)
Q Consensus 150 -~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~-------~~~~LSgG~kqRv~ia~ 221 (313)
+.++|++||++.+. .|+.+|- ...+.+.+.+.++.++..... ....||||||||++|||
T Consensus 396 ~~~i~~v~q~~~lf~---~ti~~n~----------~~~~~~~~~~~~~~~~l~~~~~~~~~~~~G~~LSgGq~qRl~lAR 462 (547)
T PRK10522 396 RKLFSAVFTDFHLFD---QLLGPEG----------KPANPALVEKWLERLKMAHKLELEDGRISNLKLSKGQKKRLALLL 462 (547)
T ss_pred hhheEEEecChhHHH---Hhhcccc----------CchHHHHHHHHHHHcCCchhhhccccCCCCCCCCHHHHHHHHHHH
Confidence 46999999976443 4677761 122345667777777633221 12489999999999999
Q ss_pred hhccCceEEEEcCCccccChhh----HHHHHhhc---c-ceEEEEcChHHHHH--HHh----hccccc
Q 021362 222 LVGLQHKVVIVDGNYLFLDGGV----WKDVSSMF---D-EKWFIEVDLDTAMQ--RVL----KRHIST 275 (313)
Q Consensus 222 al~~~ar~Li~d~~~lllDE~~----~~~l~~l~---~-~~i~vtHd~~~~~~--rv~----griv~~ 275 (313)
|++.++++|++|+++..||.+. .+.+.+.. + ..++|||+++.... +++ |++++.
T Consensus 463 al~~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~tvi~itH~~~~~~~~d~i~~l~~G~i~e~ 530 (547)
T PRK10522 463 ALAEERDILLLDEWAADQDPHFRREFYQVLLPLLQEMGKTIFAISHDDHYFIHADRLLEMRNGQLSEL 530 (547)
T ss_pred HHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEEechHHHHhCCEEEEEECCEEEEe
Confidence 9999999999999999999943 34444332 2 35799999987665 554 777764
|
|
| >PTZ00243 ABC transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.5e-29 Score=273.66 Aligned_cols=192 Identities=14% Similarity=0.111 Sum_probs=156.7
Q ss_pred EEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCC--------
Q 021362 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP-------- 148 (313)
Q Consensus 77 ~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~-------- 148 (313)
-|+++||+++|++.. ..+|+|+||+|++||.+||+|++|||||||+++|.|++. |++|+|.++|++.
T Consensus 1308 ~I~f~nVsf~Y~~~~--~~vL~~vsf~I~~GekVaIVGrTGSGKSTLl~lLlrl~~---p~~G~I~IDG~di~~i~l~~L 1382 (1560)
T PTZ00243 1308 SLVFEGVQMRYREGL--PLVLRGVSFRIAPREKVGIVGRTGSGKSTLLLTFMRMVE---VCGGEIRVNGREIGAYGLREL 1382 (1560)
T ss_pred eEEEEEEEEEeCCCC--CceeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCcEEEECCEEcccCCHHHH
Confidence 499999999996531 238999999999999999999999999999999999999 9999999999874
Q ss_pred CCeEEEEecCCCCCCcccCCcccChHHHHHhcCCCCCccHHHHHHHHHHhhc---------CCCcc----CCCCCCcCCC
Q 021362 149 PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN---------QGSVY----APSFDHGVGD 215 (313)
Q Consensus 149 ~~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~~~~~~~~~~~~l~~l~~---------~~~~~----~~~LSgG~kq 215 (313)
++.++|||||++.+. -|+++|+... .....+.+.++++..+. +.+.. ...|||||||
T Consensus 1383 R~~I~iVpQdp~LF~---gTIreNIdp~-------~~~sdeeI~~Al~~a~l~~~I~~lp~Gldt~vge~G~nLSgGQrQ 1452 (1560)
T PTZ00243 1383 RRQFSMIPQDPVLFD---GTVRQNVDPF-------LEASSAEVWAALELVGLRERVASESEGIDSRVLEGGSNYSVGQRQ 1452 (1560)
T ss_pred HhcceEECCCCcccc---ccHHHHhCcc-------cCCCHHHHHHHHHHCCChHHHhhCcccccccccCCcCcCCHHHHH
Confidence 356999999987654 4999999532 12344667777776552 22322 2479999999
Q ss_pred cchhhhhhccC-ceEEEEcCCccccCh----hhHHHHHhhccc--eEEEEcChHHHHH--HHh----hcccccCCchHHH
Q 021362 216 PVEDDILVGLQ-HKVVIVDGNYLFLDG----GVWKDVSSMFDE--KWFIEVDLDTAMQ--RVL----KRHISTGKPPDVA 282 (313)
Q Consensus 216 Rv~ia~al~~~-ar~Li~d~~~lllDE----~~~~~l~~l~~~--~i~vtHd~~~~~~--rv~----griv~~G~~~ev~ 282 (313)
|++||||++.+ +++|++|+++.-+|. .+.+.|++.++. .|+|+|.++.+.. ||+ |++++.|++++++
T Consensus 1453 rLaLARALL~~~~~ILlLDEATSaLD~~te~~Iq~~L~~~~~~~TvI~IAHRl~ti~~~DrIlVLd~G~VvE~Gt~~eLl 1532 (1560)
T PTZ00243 1453 LMCMARALLKKGSGFILMDEATANIDPALDRQIQATVMSAFSAYTVITIAHRLHTVAQYDKIIVMDHGAVAEMGSPRELV 1532 (1560)
T ss_pred HHHHHHHHhcCCCCEEEEeCCCccCCHHHHHHHHHHHHHHCCCCEEEEEeccHHHHHhCCEEEEEECCEEEEECCHHHHH
Confidence 99999999995 899999999999999 455556655432 4799999999988 666 9999999999997
Q ss_pred H
Q 021362 283 K 283 (313)
Q Consensus 283 ~ 283 (313)
.
T Consensus 1533 ~ 1533 (1560)
T PTZ00243 1533 M 1533 (1560)
T ss_pred h
Confidence 5
|
|
| >TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP) | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.5e-29 Score=273.04 Aligned_cols=193 Identities=17% Similarity=0.141 Sum_probs=157.6
Q ss_pred EEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCC--------
Q 021362 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP-------- 148 (313)
Q Consensus 77 ~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~-------- 148 (313)
-|+++||+++|+... ..+|+|+||+|++||.+||+|++|||||||+++|.|++. |++|+|.++|.+.
T Consensus 1284 ~I~f~nVsf~Y~~~~--~~vL~~is~~I~~GekiaIVGrTGsGKSTL~~lL~rl~~---~~~G~I~IdG~dI~~i~~~~L 1358 (1522)
T TIGR00957 1284 RVEFRNYCLRYREDL--DLVLRHINVTIHGGEKVGIVGRTGAGKSSLTLGLFRINE---SAEGEIIIDGLNIAKIGLHDL 1358 (1522)
T ss_pred cEEEEEEEEEeCCCC--cccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCcc---CCCCeEEECCEEccccCHHHH
Confidence 499999999997531 139999999999999999999999999999999999999 9999999999874
Q ss_pred CCeEEEEecCCCCCCcccCCcccChHHHHHhcCCCCCccHHHHHHHHHHhh---------cCCCccC----CCCCCcCCC
Q 021362 149 PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLR---------NQGSVYA----PSFDHGVGD 215 (313)
Q Consensus 149 ~~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~~~~~~~~~~~~l~~l~---------~~~~~~~----~~LSgG~kq 215 (313)
++.+++|+||++.+. -|+++|+... + ....+.+.++++..+ .+.+..+ ..|||||||
T Consensus 1359 R~~i~iVpQdp~LF~---gTIr~NLdp~----~---~~sdeei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQ 1428 (1522)
T TIGR00957 1359 RFKITIIPQDPVLFS---GSLRMNLDPF----S---QYSDEEVWWALELAHLKTFVSALPDKLDHECAEGGENLSVGQRQ 1428 (1522)
T ss_pred HhcCeEECCCCcccC---ccHHHHcCcc----c---CCCHHHHHHHHHHcCcHHHHhhCccCCCceecCCCCcCCHHHHH
Confidence 346999999987654 3999999531 1 223455666666554 1233333 379999999
Q ss_pred cchhhhhhccCceEEEEcCCccccCh----hhHHHHHhhccc--eEEEEcChHHHHH--HHh----hcccccCCchHHHH
Q 021362 216 PVEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFDE--KWFIEVDLDTAMQ--RVL----KRHISTGKPPDVAK 283 (313)
Q Consensus 216 Rv~ia~al~~~ar~Li~d~~~lllDE----~~~~~l~~l~~~--~i~vtHd~~~~~~--rv~----griv~~G~~~ev~~ 283 (313)
|++||||++.++++|++|+++.-+|. .+.+.|++.++. +|+|+|.++.+.. ||+ |++++.|+++++++
T Consensus 1429 rl~LARALLr~~~ILiLDEaTSalD~~Te~~Iq~~l~~~~~~~TvI~IAHRl~ti~~~DrIlVld~G~IvE~G~~~eLl~ 1508 (1522)
T TIGR00957 1429 LVCLARALLRKTKILVLDEATAAVDLETDNLIQSTIRTQFEDCTVLTIAHRLNTIMDYTRVIVLDKGEVAEFGAPSNLLQ 1508 (1522)
T ss_pred HHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 99999999999999999999999999 456666665443 4799999999998 766 99999999999875
Q ss_pred H
Q 021362 284 W 284 (313)
Q Consensus 284 ~ 284 (313)
.
T Consensus 1509 ~ 1509 (1522)
T TIGR00957 1509 Q 1509 (1522)
T ss_pred C
Confidence 3
|
This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved. |
| >PTZ00265 multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=4e-29 Score=271.53 Aligned_cols=194 Identities=13% Similarity=0.124 Sum_probs=153.6
Q ss_pred EEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCC--------------------
Q 021362 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWP-------------------- 136 (313)
Q Consensus 77 ~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p-------------------- 136 (313)
-|+++||+++|.+.. ..++|+|+||+|++|+.+||+||||||||||+++|.|++. |
T Consensus 1165 ~I~f~nVsF~Y~~~~-~~~vL~~lsl~i~~G~~vAIVG~SGsGKSTl~~LL~r~yd---p~~~~~~~~~~~~~~~~~~~~ 1240 (1466)
T PTZ00265 1165 KIEIMDVNFRYISRP-NVPIYKDLTFSCDSKKTTAIVGETGSGKSTVMSLLMRFYD---LKNDHHIVFKNEHTNDMTNEQ 1240 (1466)
T ss_pred eEEEEEEEEECCCCC-CCccccCeeEEEcCCCEEEEECCCCCCHHHHHHHHHHhCC---Ccccccccccccccccccccc
Confidence 499999999997432 2239999999999999999999999999999999999998 7
Q ss_pred ----------------------------------CCceeecCCCCC--------CCeEEEEecCCCCCCcccCCcccChH
Q 021362 137 ----------------------------------QKASSFDSQVKP--------PDVATVLPMDGFHLYLSQLDAMEDPK 174 (313)
Q Consensus 137 ----------------------------------~~G~i~~~g~~~--------~~~i~~v~qd~~~~~~~~ltv~e~~~ 174 (313)
++|+|.++|.+. ++.++||+|+++.+. .|++||+.
T Consensus 1241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~idG~di~~~~~~~lR~~i~~V~Qep~LF~---gTIreNI~ 1317 (1466)
T PTZ00265 1241 DYQGDEEQNVGMKNVNEFSLTKEGGSGEDSTVFKNSGKILLDGVDICDYNLKDLRNLFSIVSQEPMLFN---MSIYENIK 1317 (1466)
T ss_pred ccccccccccccccccccccccccccccccccCCCCCeEEECCEEHHhCCHHHHHhhccEeCCCCcccc---ccHHHHHh
Confidence 699999999874 346999999987654 69999998
Q ss_pred HHHHhcCCCCCccHHHHHHHHHHhh---------cCCCcc----CCCCCCcCCCcchhhhhhccCceEEEEcCCccccCh
Q 021362 175 EAHARRGAPWTFNPLLLLNCLKNLR---------NQGSVY----APSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDG 241 (313)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~l~~l~---------~~~~~~----~~~LSgG~kqRv~ia~al~~~ar~Li~d~~~lllDE 241 (313)
++. +. ...+.+.++++..+ .+.+.. ...||||||||++||||+++++++|++|+++.-||.
T Consensus 1318 ~g~-----~~-at~eeI~~A~k~A~l~~fI~~LP~GydT~VGe~G~~LSGGQkQRIaIARALlr~p~ILLLDEaTSaLD~ 1391 (1466)
T PTZ00265 1318 FGK-----ED-ATREDVKRACKFAAIDEFIESLPNKYDTNVGPYGKSLSGGQKQRIAIARALLREPKILLLDEATSSLDS 1391 (1466)
T ss_pred cCC-----CC-CCHHHHHHHHHHcCCHHHHHhCccccCCccCCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCH
Confidence 752 22 23344555555433 222332 337999999999999999999999999999999998
Q ss_pred ----hhHHHHHhhc---c-ceEEEEcChHHHHH--HHh--------hccc-ccCCchHHHH
Q 021362 242 ----GVWKDVSSMF---D-EKWFIEVDLDTAMQ--RVL--------KRHI-STGKPPDVAK 283 (313)
Q Consensus 242 ----~~~~~l~~l~---~-~~i~vtHd~~~~~~--rv~--------griv-~~G~~~ev~~ 283 (313)
.+.+.|.++. + ..|+|+|.+..+.. +++ |+++ +.|+.+|++.
T Consensus 1392 ~sE~~I~~~L~~~~~~~~~TvIiIaHRlsti~~aD~Ivvl~~~~~~G~iv~e~Gth~eLl~ 1452 (1466)
T PTZ00265 1392 NSEKLIEKTIVDIKDKADKTIITIAHRIASIKRSDKIVVFNNPDRTGSFVQAHGTHEELLS 1452 (1466)
T ss_pred HHHHHHHHHHHHHhccCCCEEEEEechHHHHHhCCEEEEEeCCCCCCCEEEEecCHHHHHh
Confidence 4566666663 2 35799999999887 554 3655 7899988875
|
|
| >KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.2e-29 Score=258.55 Aligned_cols=195 Identities=15% Similarity=0.128 Sum_probs=155.9
Q ss_pred EEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCCC-------
Q 021362 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPP------- 149 (313)
Q Consensus 77 ~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~~------- 149 (313)
-|+++||++.|..++ ++.+|+|+||+|++|+.++|+|||||||||.+.+|-.++. |++|.|.++|.+.+
T Consensus 987 ~I~~~~V~F~YPsRP-~~~Il~~l~l~i~~GqTvALVG~SGsGKSTvI~LLeRfYd---p~~G~V~IDg~dik~lnl~~L 1062 (1228)
T KOG0055|consen 987 DIEFRNVSFAYPTRP-DVPVLNNLSLSIRAGQTVALVGPSGSGKSTVISLLERFYD---PDAGKVKIDGVDIKDLNLKWL 1062 (1228)
T ss_pred EEEEeeeEeeCCCCC-CchhhcCCcEEecCCCEEEEECCCCCCHHHHHHHHHHhcC---CCCCeEEECCcccccCCHHHH
Confidence 399999999999765 6679999999999999999999999999999999999999 99999999998843
Q ss_pred -CeEEEEecCCCCCCcccCCcccChHHHHHhcCCCCCccHHHHHHHHHHhh---------cCCCcc----CCCCCCcCCC
Q 021362 150 -DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLR---------NQGSVY----APSFDHGVGD 215 (313)
Q Consensus 150 -~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~~~~~~~~~~~~l~~l~---------~~~~~~----~~~LSgG~kq 215 (313)
+.++.|.|+|.++. -|++||+.|+. .. -..+.+.++++.-. .+-+.+ -.+|||||||
T Consensus 1063 R~~i~lVsQEP~LF~---~TIrENI~YG~-----~~-vs~~eIi~Aak~ANaH~FI~sLP~GyDT~vGerG~QLSGGQKQ 1133 (1228)
T KOG0055|consen 1063 RKQIGLVSQEPVLFN---GTIRENIAYGS-----EE-VSEEEIIEAAKLANAHNFISSLPQGYDTRVGERGVQLSGGQKQ 1133 (1228)
T ss_pred HHhcceeccCchhhc---ccHHHHHhccC-----CC-CCHHHHHHHHHHhhhHHHHhcCcCcccCccCcccCcCCchHHH
Confidence 46999999976554 59999998871 11 23445555554332 233443 3499999999
Q ss_pred cchhhhhhccCceEEEEcCCccccChhhHHHHHhhcc----c--eEEEEcChHHHHH--HHh----hcccccCCchHHHH
Q 021362 216 PVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFD----E--KWFIEVDLDTAMQ--RVL----KRHISTGKPPDVAK 283 (313)
Q Consensus 216 Rv~ia~al~~~ar~Li~d~~~lllDE~~~~~l~~l~~----~--~i~vtHd~~~~~~--rv~----griv~~G~~~ev~~ 283 (313)
|+|||||++++|++|++|+.+.-||-+--+.+++..+ . .|+|.|-+..+.. .++ |++++.|+-++++.
T Consensus 1134 RIAIARAilRnPkILLLDEATSALDseSErvVQeALd~a~~gRT~IvIAHRLSTIqnaD~I~Vi~~G~VvE~GtH~~L~~ 1213 (1228)
T KOG0055|consen 1134 RIAIARAILRNPKILLLDEATSALDSESERVVQEALDRAMEGRTTIVIAHRLSTIQNADVIAVLKNGKVVEQGTHDELLA 1213 (1228)
T ss_pred HHHHHHHHHcCCCeeeeeccchhhhhhhHHHHHHHHHHhhcCCcEEEEecchhhhhcCCEEEEEECCEEEecccHHHHHh
Confidence 9999998888888888888888888743333333333 2 5899999999988 333 99999999999977
Q ss_pred H
Q 021362 284 W 284 (313)
Q Consensus 284 ~ 284 (313)
.
T Consensus 1214 ~ 1214 (1228)
T KOG0055|consen 1214 K 1214 (1228)
T ss_pred C
Confidence 4
|
|
| >cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor | Back alignment and domain information |
|---|
Probab=99.95 E-value=8.7e-29 Score=224.53 Aligned_cols=181 Identities=14% Similarity=0.035 Sum_probs=136.9
Q ss_pred ccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceee-----------cCCCCCC
Q 021362 81 RCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSF-----------DSQVKPP 149 (313)
Q Consensus 81 ~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~-----------~~g~~~~ 149 (313)
.+++++|+... .+|+|+|+ +++|++++|+||||||||||+++|+|+++ |++|+|+ ++|.+..
T Consensus 4 ~~~~~~y~~~~---~~l~~i~~-i~~Ge~~~IvG~nGsGKSTLlk~l~Gl~~---p~~G~I~~~~~~~~~~~~~~g~~~~ 76 (255)
T cd03236 4 DEPVHRYGPNS---FKLHRLPV-PREGQVLGLVGPNGIGKSTALKILAGKLK---PNLGKFDDPPDWDEILDEFRGSELQ 76 (255)
T ss_pred cCcceeecCcc---hhhhcCCC-CCCCCEEEEECCCCCCHHHHHHHHhCCcC---CCCceEeeccccchhhhhccCchhh
Confidence 47899997532 28999995 99999999999999999999999999999 9999996 6675531
Q ss_pred ----------CeEEEEecCCCCCCcccCCcccChHHHHHhcCCCCCccHHHHHHHHHHhhcC--CCccCCCCCCcCCCcc
Q 021362 150 ----------DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPV 217 (313)
Q Consensus 150 ----------~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~~~~~LSgG~kqRv 217 (313)
..+++++|+....+ .++.+++.+.. ........+.++++.++.. .+..+.+||+||+||+
T Consensus 77 ~~~~~~~~~~~~i~~~~~~~~~~~---~~~~~~i~~~l-----~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv 148 (255)
T cd03236 77 NYFTKLLEGDVKVIVKPQYVDLIP---KAVKGKVGELL-----KKKDERGKLDELVDQLELRHVLDRNIDQLSGGELQRV 148 (255)
T ss_pred hhhHHhhhcccceeeecchhccCc---hHHHHHHHHHh-----chhHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHH
Confidence 12567777633222 35556655432 1122345678888888743 3556779999999999
Q ss_pred hhhhhhccCceEEEEcCCccccChh----hHHHHHhhccc---eEEEEcChHHHHH---HHh---hcccccC
Q 021362 218 EDDILVGLQHKVVIVDGNYLFLDGG----VWKDVSSMFDE---KWFIEVDLDTAMQ---RVL---KRHISTG 276 (313)
Q Consensus 218 ~ia~al~~~ar~Li~d~~~lllDE~----~~~~l~~l~~~---~i~vtHd~~~~~~---rv~---griv~~G 276 (313)
+||++++.+++++++|+|+..||.. +.+.|+++.++ .|++|||++.+.. +++ |++.+.|
T Consensus 149 ~laral~~~p~illlDEPts~LD~~~~~~l~~~l~~l~~~~~tIIiiSHd~~~~~~~ad~i~~l~~~~~~~~ 220 (255)
T cd03236 149 AIAAALARDADFYFFDEPSSYLDIKQRLNAARLIRELAEDDNYVLVVEHDLAVLDYLSDYIHCLYGEPGAYG 220 (255)
T ss_pred HHHHHHHhCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEECCCCCcce
Confidence 9999999999999999999999993 55566655432 4799999999875 444 7666543
|
The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. |
| >TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.2e-28 Score=249.33 Aligned_cols=185 Identities=12% Similarity=0.068 Sum_probs=148.8
Q ss_pred cccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCC---CceeecCCCCC-----CCeEEEEecCCCCCCcc
Q 021362 94 LLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQ---KASSFDSQVKP-----PDVATVLPMDGFHLYLS 165 (313)
Q Consensus 94 ~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~---~G~i~~~g~~~-----~~~i~~v~qd~~~~~~~ 165 (313)
..+|+|+|+++++||+++|+||||||||||+++|+|..+ |. +|+|.++|.+. ++.++|++|++.+++
T Consensus 38 ~~iL~~vs~~i~~Ge~~aI~G~sGsGKSTLL~~L~g~~~---~~~~~~G~i~~~g~~~~~~~~~~~i~yv~Q~~~~~~-- 112 (617)
T TIGR00955 38 KHLLKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRSP---KGVKGSGSVLLNGMPIDAKEMRAISAYVQQDDLFIP-- 112 (617)
T ss_pred cccccCCEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCC---CCCcceeEEEECCEECCHHHHhhhceeeccccccCc--
Confidence 349999999999999999999999999999999999987 64 79999999764 346899999976554
Q ss_pred cCCcccChHHHHHhcCC---CCCccHHHHHHHHHHhhc--CCCccCC------CCCCcCCCcchhhhhhccCceEEEEcC
Q 021362 166 QLDAMEDPKEAHARRGA---PWTFNPLLLLNCLKNLRN--QGSVYAP------SFDHGVGDPVEDDILVGLQHKVVIVDG 234 (313)
Q Consensus 166 ~ltv~e~~~~~~~~~~~---~~~~~~~~~~~~l~~l~~--~~~~~~~------~LSgG~kqRv~ia~al~~~ar~Li~d~ 234 (313)
.+||+||+.+....+.. ...+..+++.++++.++. ..+..+. .||||||||++||++++.+++++++|+
T Consensus 113 ~lTV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~~LSgGqrkRvsia~aL~~~p~vlllDE 192 (617)
T TIGR00955 113 TLTVREHLMFQAHLRMPRRVTKKEKRERVDEVLQALGLRKCANTRIGVPGRVKGLSGGERKRLAFASELLTDPPLLFCDE 192 (617)
T ss_pred cCcHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCchhcCcCccCCCCCCCCcCcchhhHHHHHHHHHcCCCEEEeeC
Confidence 48999999998764421 112334567888888874 3355544 599999999999999999999999999
Q ss_pred CccccCh----hhHHHHHhhccc---eEEEEcChH-HHHH---HHh----hcccccCCchHHHH
Q 021362 235 NYLFLDG----GVWKDVSSMFDE---KWFIEVDLD-TAMQ---RVL----KRHISTGKPPDVAK 283 (313)
Q Consensus 235 ~~lllDE----~~~~~l~~l~~~---~i~vtHd~~-~~~~---rv~----griv~~G~~~ev~~ 283 (313)
|+..||. .+++.|+++.+. .|+++|++. ++.. +++ |+++..|++.++..
T Consensus 193 PtsgLD~~~~~~l~~~L~~l~~~g~tvi~~~hq~~~~i~~~~D~i~ll~~G~~v~~G~~~~~~~ 256 (617)
T TIGR00955 193 PTSGLDSFMAYSVVQVLKGLAQKGKTIICTIHQPSSELFELFDKIILMAEGRVAYLGSPDQAVP 256 (617)
T ss_pred CCcchhHHHHHHHHHHHHHHHhCCCEEEEEeCCCCHHHHHHhceEEEeeCCeEEEECCHHHHHH
Confidence 9999999 566666666543 469999985 4444 555 99999999988754
|
|
| >PTZ00265 multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=9.3e-29 Score=268.66 Aligned_cols=186 Identities=15% Similarity=0.102 Sum_probs=143.1
Q ss_pred EEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecC-CCCC-------
Q 021362 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDS-QVKP------- 148 (313)
Q Consensus 77 ~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~-g~~~------- 148 (313)
-|+++||++.|+... ...+|+|+||+|++|++++|+||||||||||+++|+|++. |++|+|.++ |.+.
T Consensus 382 ~I~~~nVsf~Y~~~~-~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~---p~~G~I~i~~g~~i~~~~~~~ 457 (1466)
T PTZ00265 382 KIQFKNVRFHYDTRK-DVEIYKDLNFTLTEGKTYAFVGESGCGKSTILKLIERLYD---PTEGDIIINDSHNLKDINLKW 457 (1466)
T ss_pred cEEEEEEEEEcCCCC-CCceeccceEEEcCCCEEEEECCCCCCHHHHHHHHHHhcc---CCCCeEEEeCCcchhhCCHHH
Confidence 499999999998532 2349999999999999999999999999999999999999 999999994 5542
Q ss_pred -CCeEEEEecCCCCCCcccCCcccChHHHHHhc-C---------C-----------------------------------
Q 021362 149 -PDVATVLPMDGFHLYLSQLDAMEDPKEAHARR-G---------A----------------------------------- 182 (313)
Q Consensus 149 -~~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~-~---------~----------------------------------- 182 (313)
++.++||+|+++.+. .|++||+.++.... + .
T Consensus 458 lr~~Ig~V~Q~~~LF~---~TI~eNI~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 534 (1466)
T PTZ00265 458 WRSKIGVVSQDPLLFS---NSIKNNIKYSLYSLKDLEALSNYYNEDGNDSQENKNKRNSCRAKCAGDLNDMSNTTDSNEL 534 (1466)
T ss_pred HHHhccEecccccchh---ccHHHHHHhcCCCccccchhccccccccccccccccccccccccccchhhhcccccchhhh
Confidence 245999999976543 59999998853100 0 0
Q ss_pred ------CCCccHHHHHHHHHHhhc---------CC----CccCCCCCCcCCCcchhhhhhccCceEEEEcCCccccCh--
Q 021362 183 ------PWTFNPLLLLNCLKNLRN---------QG----SVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDG-- 241 (313)
Q Consensus 183 ------~~~~~~~~~~~~l~~l~~---------~~----~~~~~~LSgG~kqRv~ia~al~~~ar~Li~d~~~lllDE-- 241 (313)
......+.+.++++.++. +. .....+||||||||++||+|++.++++|++|+++.-||.
T Consensus 535 l~~~~~~~~~~~~~v~~a~~~~~l~~~i~~lp~g~dT~vg~~g~~LSGGQkQRiaIARAll~~P~ILlLDEpTSaLD~~s 614 (1466)
T PTZ00265 535 IEMRKNYQTIKDSEVVDVSKKVLIHDFVSALPDKYETLVGSNASKLSGGQKQRISIARAIIRNPKILILDEATSSLDNKS 614 (1466)
T ss_pred hhcccccccCCHHHHHHHHHHhCcHHHHHhCccccCceeCCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHH
Confidence 001223456666665541 11 234569999999999999999999999999999999999
Q ss_pred --hhHHHHHhhcc----ceEEEEcChHHHHH--HHh
Q 021362 242 --GVWKDVSSMFD----EKWFIEVDLDTAMQ--RVL 269 (313)
Q Consensus 242 --~~~~~l~~l~~----~~i~vtHd~~~~~~--rv~ 269 (313)
.+.+.|.++.+ ..|+|+|+++.+.. +++
T Consensus 615 e~~i~~~L~~~~~~~g~TvIiIsHrls~i~~aD~Ii 650 (1466)
T PTZ00265 615 EYLVQKTINNLKGNENRITIIIAHRLSTIRYANTIF 650 (1466)
T ss_pred HHHHHHHHHHHhhcCCCEEEEEeCCHHHHHhCCEEE
Confidence 56666666642 24799999998865 544
|
|
| >TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.8e-28 Score=249.46 Aligned_cols=178 Identities=11% Similarity=-0.011 Sum_probs=139.4
Q ss_pred cEEEEccceEEcc-ccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCCCCeEEE
Q 021362 76 PVVEARCMDEVYD-ALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATV 154 (313)
Q Consensus 76 ~~l~~~~l~~~y~-~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~~~~i~~ 154 (313)
.+|+++|+++.|+ +.. +|+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.+++ ...++|
T Consensus 450 ~~i~~~nv~~~~~~~~~----il~~isl~i~~Ge~~~IvG~nGsGKSTLl~lL~Gl~~---~~~G~i~~~~---~~~i~~ 519 (659)
T TIGR00954 450 NGIKFENIPLVTPNGDV----LIESLSFEVPSGNHLLICGPNGCGKSSLFRILGELWP---VYGGRLTKPA---KGKLFY 519 (659)
T ss_pred CeEEEEeeEEECCCCCe----eeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCCeEeecC---CCcEEE
Confidence 3699999999995 334 9999999999999999999999999999999999998 9999998864 356999
Q ss_pred EecCCCCCCcccCCcccChHHHHHhcCCC-CCccHHHHHHHHHHhhcC--CCc---------cCCCCCCcCCCcchhhhh
Q 021362 155 LPMDGFHLYLSQLDAMEDPKEAHARRGAP-WTFNPLLLLNCLKNLRNQ--GSV---------YAPSFDHGVGDPVEDDIL 222 (313)
Q Consensus 155 v~qd~~~~~~~~ltv~e~~~~~~~~~~~~-~~~~~~~~~~~l~~l~~~--~~~---------~~~~LSgG~kqRv~ia~a 222 (313)
++|+++.+. .|++||+.++....+.. .....+++.++++.++.. .++ ...+||||||||++||++
T Consensus 520 v~Q~~~l~~---~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~~g~~~~~~~~~~LSgGqkQRl~iARa 596 (659)
T TIGR00954 520 VPQRPYMTL---GTLRDQIIYPDSSEDMKRRGLSDKDLEQILDNVQLTHILEREGGWSAVQDWMDVLSGGEKQRIAMARL 596 (659)
T ss_pred ECCCCCCCC---cCHHHHHhcCCChhhhhccCCCHHHHHHHHHHcCCHHHHhhcCCcccccccccCCCHHHHHHHHHHHH
Confidence 999976433 39999998753221111 112345667778777632 111 235899999999999999
Q ss_pred hccCceEEEEcCCccccChhhHHHHHhhcc----ceEEEEcChHHHHH
Q 021362 223 VGLQHKVVIVDGNYLFLDGGVWKDVSSMFD----EKWFIEVDLDTAMQ 266 (313)
Q Consensus 223 l~~~ar~Li~d~~~lllDE~~~~~l~~l~~----~~i~vtHd~~~~~~ 266 (313)
++.+++++++|+++..||....+.+.+... ..++|||+++++..
T Consensus 597 l~~~p~illLDEpts~LD~~~~~~l~~~l~~~~~tvI~isH~~~~~~~ 644 (659)
T TIGR00954 597 FYHKPQFAILDECTSAVSVDVEGYMYRLCREFGITLFSVSHRKSLWKY 644 (659)
T ss_pred HHcCCCEEEEeCCccCCCHHHHHHHHHHHHHcCCEEEEEeCchHHHHh
Confidence 999999999999999999955554444432 35799999998644
|
|
| >TIGR01194 cyc_pep_trnsptr cyclic peptide transporter | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.3e-28 Score=246.35 Aligned_cols=175 Identities=14% Similarity=-0.011 Sum_probs=136.1
Q ss_pred EEEEccceEEcccccc-ccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCCC------
Q 021362 77 VVEARCMDEVYDALAQ-RLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPP------ 149 (313)
Q Consensus 77 ~l~~~~l~~~y~~~~~-~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~~------ 149 (313)
-|+++|+++.|++... ...+|+|+||++++|++++|+||||||||||+++|+|++. |++|+|.++|.+..
T Consensus 337 ~i~~~~v~f~y~~~~~~~~~~l~~vs~~i~~G~~~aivG~sGsGKSTl~~ll~g~~~---p~~G~i~~~g~~i~~~~~~~ 413 (555)
T TIGR01194 337 SIELKDVHMNPKAPEGSEGFALGPIDLRIAQGDIVFIVGENGCGKSTLAKLFCGLYI---PQEGEILLDGAAVSADSRDD 413 (555)
T ss_pred eEEEEEEEEEeCCCCCCcCceeccceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC---CCCcEEEECCEECCCCCHHH
Confidence 4999999999975311 1238999999999999999999999999999999999999 99999999997643
Q ss_pred --CeEEEEecCCCCCCcccCCcccChHHHHHhcCCCCCccHHHHHHHHHHhhcCCC--------ccCCCCCCcCCCcchh
Q 021362 150 --DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQGS--------VYAPSFDHGVGDPVED 219 (313)
Q Consensus 150 --~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~--------~~~~~LSgG~kqRv~i 219 (313)
+.++|++||++.+. -|+.+|.. + ....+++.++++.++.... .....||||||||++|
T Consensus 414 ~~~~i~~v~q~~~lf~---~ti~~n~~--------~-~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~LSgGq~qRlal 481 (555)
T TIGR01194 414 YRDLFSAIFADFHLFD---DLIGPDEG--------E-HASLDNAQQYLQRLEIADKVKIEDGGFSTTTALSTGQQKRLAL 481 (555)
T ss_pred HHhhCcEEccChhhhh---hhhhcccc--------c-chhHHHHHHHHHHcCCchhhcccccccCCcccCCHHHHHHHHH
Confidence 45899999976543 36777731 1 2234566777777763221 1235899999999999
Q ss_pred hhhhccCceEEEEcCCccccChhhHHHHH-----hhc---cceEEEEcChHHHHH
Q 021362 220 DILVGLQHKVVIVDGNYLFLDGGVWKDVS-----SMF---DEKWFIEVDLDTAMQ 266 (313)
Q Consensus 220 a~al~~~ar~Li~d~~~lllDE~~~~~l~-----~l~---~~~i~vtHd~~~~~~ 266 (313)
||+++.++++|++|+++..||++..+.+. .+. ...++|||+++....
T Consensus 482 aRall~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~tiiiisH~~~~~~~ 536 (555)
T TIGR01194 482 ICAWLEDRPILLFDEWAADQDPAFKRFFYEELLPDLKRQGKTIIIISHDDQYFEL 536 (555)
T ss_pred HHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHHHHHh
Confidence 99999999999999999999995444332 221 224799999987654
|
This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake. |
| >COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.4e-28 Score=207.63 Aligned_cols=176 Identities=16% Similarity=0.111 Sum_probs=141.9
Q ss_pred EEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCCCCe-----
Q 021362 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDV----- 151 (313)
Q Consensus 77 ~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~~~~----- 151 (313)
+++.+||+..-+... ++.++||++.+||++-|.||||||||||+|+|+|+++ |++|+|+++|......
T Consensus 2 ~L~a~~L~~~R~e~~----lf~~L~f~l~~Ge~~~i~G~NG~GKTtLLRilaGLl~---p~~G~v~~~~~~i~~~~~~~~ 74 (209)
T COG4133 2 MLEAENLSCERGERT----LFSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLR---PDAGEVYWQGEPIQNVRESYH 74 (209)
T ss_pred cchhhhhhhccCcce----eecceeEEEcCCCEEEEECCCCCcHHHHHHHHHcccC---CCCCeEEecCCCCccchhhHH
Confidence 578899999988887 9999999999999999999999999999999999999 9999999998664321
Q ss_pred --EEEEecCCCCCCcccCCcccChHHHHHhcCCCCCccHHHHHHHHHHhhc--CCCccCCCCCCcCCCcchhhhhhccCc
Q 021362 152 --ATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDILVGLQH 227 (313)
Q Consensus 152 --i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~~~~~~~~~~~~l~~l~~--~~~~~~~~LSgG~kqRv~ia~al~~~a 227 (313)
.-|+--.+- ....+|++||+.|....++. .....+.++++.+++ ..+.++.+||-|||+||+||+..+.++
T Consensus 75 ~~l~yLGH~~g--iK~eLTa~ENL~F~~~~~~~---~~~~~i~~Al~~vgL~g~~dlp~~~LSAGQqRRvAlArL~ls~~ 149 (209)
T COG4133 75 QALLYLGHQPG--IKTELTALENLHFWQRFHGS---GNAATIWEALAQVGLAGLEDLPVGQLSAGQQRRVALARLWLSPA 149 (209)
T ss_pred HHHHHhhcccc--ccchhhHHHHHHHHHHHhCC---CchhhHHHHHHHcCcccccccchhhcchhHHHHHHHHHHHcCCC
Confidence 223322222 23359999999999887664 235667888999994 456778899999999999999999999
Q ss_pred eEEEEcCCccccChhhHHHHHhhccc-------eEEEEcChHHH
Q 021362 228 KVVIVDGNYLFLDGGVWKDVSSMFDE-------KWFIEVDLDTA 264 (313)
Q Consensus 228 r~Li~d~~~lllDE~~~~~l~~l~~~-------~i~vtHd~~~~ 264 (313)
.+.|+|+|+.-+|.+-...+..++.. ++..||..--.
T Consensus 150 pLWiLDEP~taLDk~g~a~l~~l~~~H~~~GGiVllttHq~l~~ 193 (209)
T COG4133 150 PLWILDEPFTALDKEGVALLTALMAAHAAQGGIVLLTTHQPLPI 193 (209)
T ss_pred CceeecCcccccCHHHHHHHHHHHHHHhcCCCEEEEecCCccCC
Confidence 99999999999999655555555432 25788876544
|
|
| >COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.95 E-value=6.5e-28 Score=237.35 Aligned_cols=197 Identities=13% Similarity=0.054 Sum_probs=152.1
Q ss_pred ccEEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCCCCeEEE
Q 021362 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATV 154 (313)
Q Consensus 75 m~~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~~~~i~~ 154 (313)
|.+|.++++++.|+++. +|+++||++.+|+.+||+|+||||||||||+|+|.+. |++|+|...+ ..+++|
T Consensus 1 m~~i~~~~ls~~~g~~~----l~~~~~l~~~~G~riGLvG~NGaGKSTLLkilaG~~~---~~~G~i~~~~---~~~v~~ 70 (530)
T COG0488 1 MSMITLENLSLAYGDRP----LLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELE---PDSGEVTRPK---GLRVGY 70 (530)
T ss_pred CceEEEeeeEEeeCCce----eecCCcceeCCCCEEEEECCCCCCHHHHHHHHcCCCc---CCCCeEeecC---CceEEE
Confidence 56899999999999888 9999999999999999999999999999999999999 9999998764 246999
Q ss_pred EecCCCCCCcccCCcccChHHHHHhc------------------------------CCCCCccHHHHHHHHHHhhcCC-C
Q 021362 155 LPMDGFHLYLSQLDAMEDPKEAHARR------------------------------GAPWTFNPLLLLNCLKNLRNQG-S 203 (313)
Q Consensus 155 v~qd~~~~~~~~ltv~e~~~~~~~~~------------------------------~~~~~~~~~~~~~~l~~l~~~~-~ 203 (313)
+.|+..... ..|+.+.+....... .........++..+|..++... +
T Consensus 71 l~Q~~~~~~--~~tv~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~~~~L~gLg~~~~~ 148 (530)
T COG0488 71 LSQEPPLDP--EKTVLDYVIEGFGELRELLAELEEAYALLADPDDELLAELEALLEELDGWTLEARAEEALLGLGFPDED 148 (530)
T ss_pred eCCCCCcCC--CccHHHHHHhhhHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHhhcccchHHHHHHHHhcCCCCccc
Confidence 999966433 357777655432100 0000112345566777777433 6
Q ss_pred ccCCCCCCcCCCcchhhhhhccCceEEEEcCCccccChhhHHHHHhhcc----ceEEEEcChHHHHH---HHh----hcc
Q 021362 204 VYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFD----EKWFIEVDLDTAMQ---RVL----KRH 272 (313)
Q Consensus 204 ~~~~~LSgG~kqRv~ia~al~~~ar~Li~d~~~lllDE~~~~~l~~l~~----~~i~vtHd~~~~~~---rv~----gri 272 (313)
+++.+||||||.||++|++|..+|++|++|+|+.-||-+.+..|.++.. ..|+||||.++... +++ |++
T Consensus 149 ~~~~~LSGG~r~Rv~LA~aL~~~pDlLLLDEPTNHLD~~~i~WLe~~L~~~~gtviiVSHDR~FLd~V~t~I~~ld~g~l 228 (530)
T COG0488 149 RPVSSLSGGWRRRVALARALLEEPDLLLLDEPTNHLDLESIEWLEDYLKRYPGTVIVVSHDRYFLDNVATHILELDRGKL 228 (530)
T ss_pred CchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHhCCCcEEEEeCCHHHHHHHhhheEEecCCce
Confidence 7888999999999999999999999999999999999976666666653 35899999999877 555 555
Q ss_pred cc-cCCchHHHH
Q 021362 273 IS-TGKPPDVAK 283 (313)
Q Consensus 273 v~-~G~~~ev~~ 283 (313)
.. .|.-+...+
T Consensus 229 ~~y~Gny~~~~~ 240 (530)
T COG0488 229 TPYKGNYSSYLE 240 (530)
T ss_pred eEecCCHHHHHH
Confidence 54 455444443
|
|
| >KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.5e-28 Score=232.11 Aligned_cols=193 Identities=18% Similarity=0.182 Sum_probs=147.7
Q ss_pred EEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCCC-------
Q 021362 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPP------- 149 (313)
Q Consensus 77 ~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~~------- 149 (313)
-|+++|+++.|.... ++|+||||++.+|+.++|+||||+||||++|+|..++. .++|.|.++|++++
T Consensus 537 ~i~fsnvtF~Y~p~k---~vl~disF~v~pGktvAlVG~SGaGKSTimRlLfRffd---v~sGsI~iDgqdIrnvt~~SL 610 (790)
T KOG0056|consen 537 KIEFSNVTFAYDPGK---PVLSDISFTVQPGKTVALVGPSGAGKSTIMRLLFRFFD---VNSGSITIDGQDIRNVTQSSL 610 (790)
T ss_pred eEEEEEeEEecCCCC---ceeecceEEecCCcEEEEECCCCCchhHHHHHHHHHhh---ccCceEEEcCchHHHHHHHHH
Confidence 599999999997533 39999999999999999999999999999999999999 99999999999843
Q ss_pred -CeEEEEecCCCCCCcccCCcccChHHHHHhcCCCCCccHHHHHHHHH------Hhh---cCCCc----cCCCCCCcCCC
Q 021362 150 -DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLK------NLR---NQGSV----YAPSFDHGVGD 215 (313)
Q Consensus 150 -~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~~~~~~~~~~~~l~------~l~---~~~~~----~~~~LSgG~kq 215 (313)
+.||+||||...+. -|+..|+.++ .+.+.++ .+.++.+ ++- ++-+. +.-.|||||||
T Consensus 611 Rs~IGVVPQDtvLFN---dTI~yNIrya-----k~~Asne-evyaAAkAA~IHdrIl~fPegY~t~VGERGLkLSGGEKQ 681 (790)
T KOG0056|consen 611 RSSIGVVPQDTVLFN---DTILYNIRYA-----KPSASNE-EVYAAAKAAQIHDRILQFPEGYNTRVGERGLKLSGGEKQ 681 (790)
T ss_pred HHhcCcccCcceeec---ceeeeheeec-----CCCCChH-HHHHHHHHhhHHHHHhcCchhhhhhhhhcccccCCcchh
Confidence 46999999966554 3899998764 3333222 2222222 221 11122 23389999999
Q ss_pred cchhhhhhccCceEEEEcCCccccCh----hhHHHHHhhccc--eEEEEcChHHHHH-H-Hh----hcccccCCchHHHH
Q 021362 216 PVEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFDE--KWFIEVDLDTAMQ-R-VL----KRHISTGKPPDVAK 283 (313)
Q Consensus 216 Rv~ia~al~~~ar~Li~d~~~lllDE----~~~~~l~~l~~~--~i~vtHd~~~~~~-r-v~----griv~~G~~~ev~~ 283 (313)
||+||+++...+.++++|+.+.-||- .+...+.+++.. .|+|.|.+..+.. . ++ |+|+++|+-+|++.
T Consensus 682 RVAiARtiLK~P~iIlLDEATSALDT~tER~IQaaL~rlca~RTtIVvAHRLSTivnAD~ILvi~~G~IvErG~HeeLl~ 761 (790)
T KOG0056|consen 682 RVAIARTILKAPSIILLDEATSALDTNTERAIQAALARLCANRTTIVVAHRLSTIVNADLILVISNGRIVERGRHEELLK 761 (790)
T ss_pred hHHHHHHHhcCCcEEEEcchhhhcCCccHHHHHHHHHHHhcCCceEEEeeeehheecccEEEEEeCCeEeecCcHHHHHh
Confidence 99997777777777777777777776 566667777653 5899999999877 2 22 99999999999876
Q ss_pred H
Q 021362 284 W 284 (313)
Q Consensus 284 ~ 284 (313)
.
T Consensus 762 r 762 (790)
T KOG0056|consen 762 R 762 (790)
T ss_pred c
Confidence 5
|
|
| >KOG0059 consensus Lipid exporter ABCA1 and related proteins, ABC superfamily [Lipid transport and metabolism; General function prediction only] | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.7e-28 Score=253.76 Aligned_cols=200 Identities=16% Similarity=0.145 Sum_probs=178.1
Q ss_pred cEEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCCC------
Q 021362 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPP------ 149 (313)
Q Consensus 76 ~~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~~------ 149 (313)
..+.++|++|.|+.... +++++||.|++||+.|++|+|||||||++++|.|..+ |++|+++++|.+..
T Consensus 563 ~~~~~~~L~k~y~~~~~---Av~~ls~~V~~gecfgLLG~NGAGKtT~f~mltG~~~---~t~G~a~i~g~~i~~~~~~~ 636 (885)
T KOG0059|consen 563 SALVLNNLSKVYGGKDG---AVRGLSFAVPPGECFGLLGVNGAGKTTTFKMLTGETK---PTSGEALIKGHDITVSTDFQ 636 (885)
T ss_pred ceEEEcceeeeecchhh---hhcceEEEecCCceEEEecCCCCCchhhHHHHhCCcc---CCcceEEEecCccccccchh
Confidence 46899999999987653 8999999999999999999999999999999999999 99999999886632
Q ss_pred ---CeEEEEecCCCCCCcccCCcccChHHHHHhcCCCCCccHHHHHHHHHHhh--cCCCccCCCCCCcCCCcchhhhhhc
Q 021362 150 ---DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLR--NQGSVYAPSFDHGVGDPVEDDILVG 224 (313)
Q Consensus 150 ---~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~~~~~~~~~~~~l~~l~--~~~~~~~~~LSgG~kqRv~ia~al~ 224 (313)
+.+||+||.+..+. .+|.+|++.+..+.+|.++....+.+..+++.++ ...++.++.||||+|+|+.+|.|++
T Consensus 637 ~~~~~iGyCPQ~d~l~~--~lT~rEhL~~~arlrG~~~~di~~~v~~ll~~~~L~~~~~~~~~~ySgG~kRkLs~aiali 714 (885)
T KOG0059|consen 637 QVRKQLGYCPQFDALWE--ELTGREHLEFYARLRGLPRSDIGSAIEKLLRLVGLGPYANKQVRTYSGGNKRRLSFAIALI 714 (885)
T ss_pred hhhhhcccCCchhhhhh--hccHHHHHHHHHHHcCCChhHHHHHHHHHHHHcCChhhhccchhhCCCcchhhHHHHHHHh
Confidence 34999999966544 5999999999999999988777777899999988 4567778899999999999999999
Q ss_pred cCceEEEEcCCccccCh----hhHHHHHhhccc---eEEEEcChHHHHH---HHh----hcccccCCchHHHH
Q 021362 225 LQHKVVIVDGNYLFLDG----GVWKDVSSMFDE---KWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAK 283 (313)
Q Consensus 225 ~~ar~Li~d~~~lllDE----~~~~~l~~l~~~---~i~vtHd~~~~~~---rv~----griv~~G~~~ev~~ 283 (313)
.++.++++|+|...+|+ ++|+.|.++.+. .++.||.|+++.. |+. |++..-|.++++-.
T Consensus 715 g~p~vi~LDEPstGmDP~arr~lW~ii~~~~k~g~aiiLTSHsMeE~EaLCtR~aImv~G~l~ciGs~q~LKs 787 (885)
T KOG0059|consen 715 GDPSVILLDEPSTGLDPKARRHLWDIIARLRKNGKAIILTSHSMEEAEALCTRTAIMVIGQLRCIGSPQELKS 787 (885)
T ss_pred cCCCEEEecCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHHhhhhheeecCeeEEecChHHHHh
Confidence 99999999999999998 789999988874 4799999999998 766 99999999988863
|
|
| >TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.7e-28 Score=265.19 Aligned_cols=191 Identities=14% Similarity=0.117 Sum_probs=156.1
Q ss_pred EEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCC--------
Q 021362 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP-------- 148 (313)
Q Consensus 77 ~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~-------- 148 (313)
-|+++||+++|+.. ...+|+|+||+|++||.+||+|++|||||||+++|.|++ +++|+|.++|.+.
T Consensus 1217 ~I~f~nVs~~Y~~~--~~~vL~~is~~I~~GekvaIvGrSGsGKSTLl~lL~rl~----~~~G~I~IdG~di~~i~~~~l 1290 (1490)
T TIGR01271 1217 QMDVQGLTAKYTEA--GRAVLQDLSFSVEGGQRVGLLGRTGSGKSTLLSALLRLL----STEGEIQIDGVSWNSVTLQTW 1290 (1490)
T ss_pred eEEEEEEEEEeCCC--CcceeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhhhc----CCCcEEEECCEEcccCCHHHH
Confidence 49999999999752 123999999999999999999999999999999999998 5789999999774
Q ss_pred CCeEEEEecCCCCCCcccCCcccChHHHHHhcCCCCCccHHHHHHHHHHhhc---------CCCccC----CCCCCcCCC
Q 021362 149 PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN---------QGSVYA----PSFDHGVGD 215 (313)
Q Consensus 149 ~~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~~~~~~~~~~~~l~~l~~---------~~~~~~----~~LSgG~kq 215 (313)
++.++|||||++.+. -|+++|+... .....+.+.++|+.++. +.+..+ ..|||||||
T Consensus 1291 R~~is~IpQdp~LF~---GTIR~NLdp~-------~~~tdeei~~aL~~~~L~~~i~~lp~GLdt~v~e~G~nLSgGQrQ 1360 (1490)
T TIGR01271 1291 RKAFGVIPQKVFIFS---GTFRKNLDPY-------EQWSDEEIWKVAEEVGLKSVIEQFPDKLDFVLVDGGYVLSNGHKQ 1360 (1490)
T ss_pred HhceEEEeCCCccCc---cCHHHHhCcc-------cCCCHHHHHHHHHHCCCHHHHHhCccccccccccCCCcCCHHHHH
Confidence 346999999987655 4999999532 12345667777776652 222222 279999999
Q ss_pred cchhhhhhccCceEEEEcCCccccCh----hhHHHHHhhccc--eEEEEcChHHHHH--HHh----hcccccCCchHHHH
Q 021362 216 PVEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFDE--KWFIEVDLDTAMQ--RVL----KRHISTGKPPDVAK 283 (313)
Q Consensus 216 Rv~ia~al~~~ar~Li~d~~~lllDE----~~~~~l~~l~~~--~i~vtHd~~~~~~--rv~----griv~~G~~~ev~~ 283 (313)
|++||||++.++++|++|+++.-+|. .+.+.|++.++. +|+|+|.++.+.. ||+ |++++.|+|.++++
T Consensus 1361 rL~LARALLr~~~ILlLDEaTS~lD~~Te~~I~~~L~~~~~~~TvI~IaHRl~ti~~~DrIlvL~~G~ivE~g~p~~Ll~ 1440 (1490)
T TIGR01271 1361 LMCLARSILSKAKILLLDEPSAHLDPVTLQIIRKTLKQSFSNCTVILSEHRVEALLECQQFLVIEGSSVKQYDSIQKLLN 1440 (1490)
T ss_pred HHHHHHHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHhCCEEEEEECCEEEEeCCHHHHHc
Confidence 99999999999999999999999998 566666666543 4799999999988 666 99999999999874
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se. |
| >cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids | Back alignment and domain information |
|---|
Probab=99.95 E-value=4.9e-28 Score=207.79 Aligned_cols=126 Identities=15% Similarity=0.136 Sum_probs=108.8
Q ss_pred ccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCCCCeEEEEecCCC
Q 021362 81 RCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGF 160 (313)
Q Consensus 81 ~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~~~~i~~v~qd~~ 160 (313)
.|++|.|++.. ++++ +|++++||+++|+||||||||||+|+|+|+++ |++|+|.++|. .++|++|+..
T Consensus 4 ~~l~~~~~~~~----~l~~-~~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~---p~~G~i~~~g~----~i~~~~q~~~ 71 (177)
T cd03222 4 PDCVKRYGVFF----LLVE-LGVVKEGEVIGIVGPNGTGKTTAVKILAGQLI---PNGDNDEWDGI----TPVYKPQYID 71 (177)
T ss_pred CCeEEEECCEE----EEcc-CcEECCCCEEEEECCCCChHHHHHHHHHcCCC---CCCcEEEECCE----EEEEEcccCC
Confidence 58999998876 8888 49999999999999999999999999999999 99999999874 3677776521
Q ss_pred CCCcccCCcccChHHHHHhcCCCCCccHHHHHHHHHHhhcCCCccCCCCCCcCCCcchhhhhhccCceEEEEcCCccccC
Q 021362 161 HLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLD 240 (313)
Q Consensus 161 ~~~~~~ltv~e~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~LSgG~kqRv~ia~al~~~ar~Li~d~~~lllD 240 (313)
||+|||||+++|++++.+++++++|+|+..||
T Consensus 72 ------------------------------------------------LSgGq~qrv~laral~~~p~lllLDEPts~LD 103 (177)
T cd03222 72 ------------------------------------------------LSGGELQRVAIAAALLRNATFYLFDEPSAYLD 103 (177)
T ss_pred ------------------------------------------------CCHHHHHHHHHHHHHhcCCCEEEEECCcccCC
Confidence 99999999999999999999999999999999
Q ss_pred h----hhHHHHHhhcc----ceEEEEcChHHHHH
Q 021362 241 G----GVWKDVSSMFD----EKWFIEVDLDTAMQ 266 (313)
Q Consensus 241 E----~~~~~l~~l~~----~~i~vtHd~~~~~~ 266 (313)
. .+.+.|.++.+ ..+++|||++++..
T Consensus 104 ~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~ 137 (177)
T cd03222 104 IEQRLNAARAIRRLSEEGKKTALVVEHDLAVLDY 137 (177)
T ss_pred HHHHHHHHHHHHHHHHcCCCEEEEEECCHHHHHH
Confidence 9 34555555532 24799999999875
|
RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. |
| >COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.8e-27 Score=226.21 Aligned_cols=195 Identities=16% Similarity=0.105 Sum_probs=153.5
Q ss_pred EEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCC--------
Q 021362 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP-------- 148 (313)
Q Consensus 77 ~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~-------- 148 (313)
.|.+++++..=.+ .+.++|+++||++.+||.+||+||||||||||.|+|.|..+ |.+|.|++||-+.
T Consensus 334 ~L~Ve~l~~~PPg--~~~pil~~isF~l~~G~~lgIIGPSgSGKSTLaR~lvG~w~---p~~G~VRLDga~l~qWd~e~l 408 (580)
T COG4618 334 ALSVERLTAAPPG--QKKPILKGISFALQAGEALGIIGPSGSGKSTLARLLVGIWP---PTSGSVRLDGADLRQWDREQL 408 (580)
T ss_pred eeeEeeeeecCCC--CCCcceecceeEecCCceEEEECCCCccHHHHHHHHHcccc---cCCCcEEecchhhhcCCHHHh
Confidence 6999999886544 23459999999999999999999999999999999999999 9999999999653
Q ss_pred CCeEEEEecCCCCCCcccCCcccChHHHHHhcCCCCCccHHHHHHH---------HHHhhcCCCccCC----CCCCcCCC
Q 021362 149 PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNC---------LKNLRNQGSVYAP----SFDHGVGD 215 (313)
Q Consensus 149 ~~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~~~~~~~~~~~~---------l~~l~~~~~~~~~----~LSgG~kq 215 (313)
.+.+||+|||-..+. =|+.||+.-. + .+.+.+++.+. +-++-.+-+..+. .|||||||
T Consensus 409 G~hiGYLPQdVeLF~---GTIaeNIaRf----~--~~~d~~kIieAA~lAgvHelIl~lP~GYdT~iG~~G~~LSgGQRQ 479 (580)
T COG4618 409 GRHIGYLPQDVELFD---GTIAENIARF----G--EEADPEKVIEAARLAGVHELILRLPQGYDTRIGEGGATLSGGQRQ 479 (580)
T ss_pred ccccCcCcccceecC---CcHHHHHHhc----c--ccCCHHHHHHHHHHcChHHHHHhCcCCccCccCCCCCCCCchHHH
Confidence 356999999965544 4999999643 1 22334444333 3233333344333 99999999
Q ss_pred cchhhhhhccCceEEEEcCCccccCh----hhHHHHHhhccc---eEEEEcChHHHHH--HHh----hcccccCCchHHH
Q 021362 216 PVEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFDE---KWFIEVDLDTAMQ--RVL----KRHISTGKPPDVA 282 (313)
Q Consensus 216 Rv~ia~al~~~ar~Li~d~~~lllDE----~~~~~l~~l~~~---~i~vtHd~~~~~~--rv~----griv~~G~~~ev~ 282 (313)
|+++|+|+-.+++.+++|||=.-||+ .+.+.|.+...+ .|+|+|-+..... +++ |++-..|+.+|++
T Consensus 480 RIaLARAlYG~P~lvVLDEPNsNLD~~GE~AL~~Ai~~~k~rG~~vvviaHRPs~L~~~Dkilvl~~G~~~~FG~r~eVL 559 (580)
T COG4618 480 RIALARALYGDPFLVVLDEPNSNLDSEGEAALAAAILAAKARGGTVVVIAHRPSALASVDKILVLQDGRIAAFGPREEVL 559 (580)
T ss_pred HHHHHHHHcCCCcEEEecCCCCCcchhHHHHHHHHHHHHHHcCCEEEEEecCHHHHhhcceeeeecCChHHhcCCHHHHH
Confidence 99999999999999999999999998 455556665544 4699999998877 555 9999999999998
Q ss_pred HHH
Q 021362 283 KWR 285 (313)
Q Consensus 283 ~~~ 285 (313)
.+-
T Consensus 560 a~~ 562 (580)
T COG4618 560 AKV 562 (580)
T ss_pred HHh
Confidence 874
|
|
| >COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.9e-27 Score=197.83 Aligned_cols=184 Identities=17% Similarity=0.125 Sum_probs=144.9
Q ss_pred EEEEccceEEccccc---cccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCC------
Q 021362 77 VVEARCMDEVYDALA---QRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK------ 147 (313)
Q Consensus 77 ~l~~~~l~~~y~~~~---~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~------ 147 (313)
.|.++|++|+|--.. -..++|+++||+++.||+++|-||||+|||||+|+|.|.+. |++|+|++....
T Consensus 4 ~l~v~~~~KtFtlH~q~Gi~LpV~~~vslsV~aGECvvL~G~SG~GKStllr~LYaNY~---~d~G~I~v~H~g~~vdl~ 80 (235)
T COG4778 4 PLNVSNVSKTFTLHQQGGVRLPVLRNVSLSVNAGECVVLHGPSGSGKSTLLRSLYANYL---PDEGQILVRHEGEWVDLV 80 (235)
T ss_pred eeeeecchhheEeeecCCEEeeeeeceeEEecCccEEEeeCCCCCcHHHHHHHHHhccC---CCCceEEEEeCcchhhhh
Confidence 589999999994221 23569999999999999999999999999999999999999 999999875432
Q ss_pred ----------CCCeEEEEecCCCCCCcccCCcccChHHHHHhcCCCCCccHHHHHHHHHHhhcCC---CccCCCCCCcCC
Q 021362 148 ----------PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQG---SVYAPSFDHGVG 214 (313)
Q Consensus 148 ----------~~~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~---~~~~~~LSgG~k 214 (313)
+.+.+|||+|.--..+ ..+..|-++.++...|.+......++..+|.++.... ...+.++|||||
T Consensus 81 ~a~pr~vl~vRr~TiGyVSQFLRviP--RV~aLdVvaePll~~gv~~~~a~~~a~~Ll~rLnlperLW~LaPaTFSGGEq 158 (235)
T COG4778 81 TAEPREVLEVRRTTIGYVSQFLRVIP--RVSALDVVAEPLLARGVPREVARAKAADLLTRLNLPERLWSLAPATFSGGEQ 158 (235)
T ss_pred ccChHHHHHHHHhhhHHHHHHHHhcc--CcchHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCCHHHhcCCCcccCCchh
Confidence 2345899999743333 3677888888888889888878888999999998443 335559999999
Q ss_pred CcchhhhhhccCceEEEEcCCccccChh----hHHHHHhhccce---EEEEcChHHHH
Q 021362 215 DPVEDDILVGLQHKVVIVDGNYLFLDGG----VWKDVSSMFDEK---WFIEVDLDTAM 265 (313)
Q Consensus 215 qRv~ia~al~~~ar~Li~d~~~lllDE~----~~~~l~~l~~~~---i~vtHd~~~~~ 265 (313)
|||.||+.++.+..+|++|+|+.-||.. +.+.|.+-...+ +=|=||.+...
T Consensus 159 QRVNIaRgfivd~pILLLDEPTasLDa~Nr~vVveli~e~Ka~GaAlvGIFHDeevre 216 (235)
T COG4778 159 QRVNIARGFIVDYPILLLDEPTASLDATNRAVVVELIREAKARGAALVGIFHDEEVRE 216 (235)
T ss_pred eehhhhhhhhccCceEEecCCcccccccchHHHHHHHHHHHhcCceEEEeeccHHHHH
Confidence 9999999999999999999999999983 444444443332 34558866543
|
|
| >PLN03140 ABC transporter G family member; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.4e-27 Score=258.86 Aligned_cols=208 Identities=14% Similarity=0.061 Sum_probs=157.3
Q ss_pred EEEEccceEEccccc---------cccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCC
Q 021362 77 VVEARCMDEVYDALA---------QRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK 147 (313)
Q Consensus 77 ~l~~~~l~~~y~~~~---------~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~ 147 (313)
.+..+||++.+.... ++..+|+|+|+++++|++++|+||||||||||+++|+|+.+. -+.+|+|.++|.+
T Consensus 867 ~~~~~~v~y~v~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gel~aL~G~sGaGKTTLL~~LaG~~~~-g~~~G~I~inG~~ 945 (1470)
T PLN03140 867 AMSFDDVNYFVDMPAEMKEQGVTEDRLQLLREVTGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTG-GYIEGDIRISGFP 945 (1470)
T ss_pred eEEEEEEEEEEccCccccccccCcCCceEeeCcEEEEECCeEEEEECCCCCCHHHHHHHHcCCCCC-CcccceEEECCcc
Confidence 588999998874211 223599999999999999999999999999999999998740 0268999999976
Q ss_pred CC-----CeEEEEecCCCCCCcccCCcccChHHHHHhcCCCC----CccHHHHHHHHHHhhcC--CCccC-----CCCCC
Q 021362 148 PP-----DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPW----TFNPLLLLNCLKNLRNQ--GSVYA-----PSFDH 211 (313)
Q Consensus 148 ~~-----~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~~----~~~~~~~~~~l~~l~~~--~~~~~-----~~LSg 211 (313)
.. +.++|++|++.+++ .+||+|++.+....+ .+. .+..+.+.++++.++.. .+..+ ..|||
T Consensus 946 ~~~~~~~~~igyv~Q~d~~~~--~lTV~E~L~~~a~lr-~~~~~~~~~~~~~v~~vl~~lgL~~~~~~~vg~~~~~~LSg 1022 (1470)
T PLN03140 946 KKQETFARISGYCEQNDIHSP--QVTVRESLIYSAFLR-LPKEVSKEEKMMFVDEVMELVELDNLKDAIVGLPGVTGLST 1022 (1470)
T ss_pred CChHHhhhheEEEccccccCC--CCcHHHHHHHHHHhC-CCCCCCHHHHHHHHHHHHHHCCChhHhCCccCCCCCCCcCH
Confidence 42 45899999976554 489999999876443 221 12234577888888742 34443 48999
Q ss_pred cCCCcchhhhhhccCceEEEEcCCccccCh----hhHHHHHhhccc---eEEEEcChHH-HHH---HHh-----hccccc
Q 021362 212 GVGDPVEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFDE---KWFIEVDLDT-AMQ---RVL-----KRHIST 275 (313)
Q Consensus 212 G~kqRv~ia~al~~~ar~Li~d~~~lllDE----~~~~~l~~l~~~---~i~vtHd~~~-~~~---rv~-----griv~~ 275 (313)
|||||++||++++.++++|++|+|+..||. .+++.|+++.++ +|+++|+++. +.. +++ |+++..
T Consensus 1023 GerkRvsIa~aL~~~P~lL~LDEPTsgLD~~~a~~v~~~L~~l~~~g~tVI~t~Hq~~~~i~~~~D~vllL~~gG~~v~~ 1102 (1470)
T PLN03140 1023 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGQVIYS 1102 (1470)
T ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHhCCEEEEEcCCCEEEEE
Confidence 999999999999999999999999999999 566666666543 4799999984 333 444 688888
Q ss_pred CCch---HHHHHHHHh
Q 021362 276 GKPP---DVAKWRIEY 288 (313)
Q Consensus 276 G~~~---ev~~~~~~~ 288 (313)
|++. +-+.++++.
T Consensus 1103 G~~~~~~~~~~~yF~~ 1118 (1470)
T PLN03140 1103 GPLGRNSHKIIEYFEA 1118 (1470)
T ss_pred CCcccccccHHHHHHh
Confidence 8864 233444554
|
|
| >PLN03130 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=4.7e-27 Score=257.48 Aligned_cols=188 Identities=17% Similarity=0.199 Sum_probs=149.1
Q ss_pred EEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCC-ceeecCCCCCCCeEEEE
Q 021362 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQK-ASSFDSQVKPPDVATVL 155 (313)
Q Consensus 77 ~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~-G~i~~~g~~~~~~i~~v 155 (313)
.|+++|+++.|+... ...+|+|+||+|++|+.++|+||+|||||||+++|.|+++ |++ |+|.+. ..++|+
T Consensus 614 ~I~~~nvsf~y~~~~-~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~---~~~GG~I~l~-----~~Iayv 684 (1622)
T PLN03130 614 AISIKNGYFSWDSKA-ERPTLSNINLDVPVGSLVAIVGSTGEGKTSLISAMLGELP---PRSDASVVIR-----GTVAYV 684 (1622)
T ss_pred ceEEEeeEEEccCCC-CCceeeceeEEecCCCEEEEECCCCCCHHHHHHHHHHhhc---cCCCceEEEc-----CeEEEE
Confidence 599999999997421 1238999999999999999999999999999999999999 999 899864 469999
Q ss_pred ecCCCCCCcccCCcccChHHHHHhcCCCCCccHHHHHHHHHHhh---------cCCCcc----CCCCCCcCCCcchhhhh
Q 021362 156 PMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLR---------NQGSVY----APSFDHGVGDPVEDDIL 222 (313)
Q Consensus 156 ~qd~~~~~~~~ltv~e~~~~~~~~~~~~~~~~~~~~~~~l~~l~---------~~~~~~----~~~LSgG~kqRv~ia~a 222 (313)
+|+++.+. -|++||+.++. + .+.+++.++++..+ .+.+.. ...||||||||++||||
T Consensus 685 ~Q~p~Lfn---gTIreNI~fg~-----~--~d~e~y~~vl~a~~L~~di~~LP~Gd~T~IGe~G~~LSGGQKQRIaLARA 754 (1622)
T PLN03130 685 PQVSWIFN---ATVRDNILFGS-----P--FDPERYERAIDVTALQHDLDLLPGGDLTEIGERGVNISGGQKQRVSMARA 754 (1622)
T ss_pred cCccccCC---CCHHHHHhCCC-----c--ccHHHHHHHHHHhCcHHHHHhCCCcccccccCCCCCCCHHHHHHHHHHHH
Confidence 99987654 59999998752 2 24555666555443 222332 33799999999999999
Q ss_pred hccCceEEEEcCCccccChhhHHHH-----Hhhcc--ceEEEEcChHHHHH--HHh----hcccccCCchHHHH
Q 021362 223 VGLQHKVVIVDGNYLFLDGGVWKDV-----SSMFD--EKWFIEVDLDTAMQ--RVL----KRHISTGKPPDVAK 283 (313)
Q Consensus 223 l~~~ar~Li~d~~~lllDE~~~~~l-----~~l~~--~~i~vtHd~~~~~~--rv~----griv~~G~~~ev~~ 283 (313)
+..+++++++|+++.-+|.+.-+.+ ....+ ..|+|||+++.+.. +++ |++++.|+.+++..
T Consensus 755 ly~~~~IlLLDEptSALD~~~~~~I~~~~l~~~l~~kTvIlVTH~l~~l~~aD~Ii~L~~G~i~e~Gt~~eL~~ 828 (1622)
T PLN03130 755 VYSNSDVYIFDDPLSALDAHVGRQVFDKCIKDELRGKTRVLVTNQLHFLSQVDRIILVHEGMIKEEGTYEELSN 828 (1622)
T ss_pred HhCCCCEEEECCCccccCHHHHHHHHHHHhhHHhcCCEEEEEECCHhHHHhCCEEEEEeCCEEEEeCCHHHHHh
Confidence 9999999999999999998543332 22222 35799999988777 665 99999999988854
|
|
| >PLN03140 ABC transporter G family member; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=7.1e-27 Score=253.32 Aligned_cols=185 Identities=14% Similarity=0.139 Sum_probs=146.8
Q ss_pred cccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCC---CceeecCCCCC-----CCeEEEEecCCCCCCcc
Q 021362 94 LLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQ---KASSFDSQVKP-----PDVATVLPMDGFHLYLS 165 (313)
Q Consensus 94 ~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~---~G~i~~~g~~~-----~~~i~~v~qd~~~~~~~ 165 (313)
..+|+|+|+.|++|++++|+||||||||||||+|+|+++ |+ +|+|.++|.+. ++.++|++|++.+++
T Consensus 178 ~~IL~~vs~~i~~Ge~~~llGpnGSGKSTLLk~LaG~l~---~~~~~~G~I~~nG~~~~~~~~~~~i~yv~Q~d~~~~-- 252 (1470)
T PLN03140 178 LTILKDASGIIKPSRMTLLLGPPSSGKTTLLLALAGKLD---PSLKVSGEITYNGYRLNEFVPRKTSAYISQNDVHVG-- 252 (1470)
T ss_pred ceeccCCeEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCC---CCCcceeEEEECCEechhhcccceeEEecccccCCC--
Confidence 458999999999999999999999999999999999998 88 99999999753 356899999976655
Q ss_pred cCCcccChHHHHHhcCCCC----------Cc---------c---------------HHHHHHHHHHhhcCC-------Cc
Q 021362 166 QLDAMEDPKEAHARRGAPW----------TF---------N---------------PLLLLNCLKNLRNQG-------SV 204 (313)
Q Consensus 166 ~ltv~e~~~~~~~~~~~~~----------~~---------~---------------~~~~~~~l~~l~~~~-------~~ 204 (313)
.+||+|++.+....++... .+ + ...+..+++.+|... +.
T Consensus 253 ~lTV~EtL~f~a~~~~~~~~~~~~~~~~~~ek~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~L~~lGL~~~~~t~vg~~ 332 (1470)
T PLN03140 253 VMTVKETLDFSARCQGVGTRYDLLSELARREKDAGIFPEAEVDLFMKATAMEGVKSSLITDYTLKILGLDICKDTIVGDE 332 (1470)
T ss_pred cCcHHHHHHHHHHhcCCCCcccchhhcCHHHHhccCCCchhhHHHHHHhhhhcchhhHHHHHHHHHcCCccccCceeCCc
Confidence 4999999999876543211 00 0 012356777887432 44
Q ss_pred cCCCCCCcCCCcchhhhhhccCceEEEEcCCccccCh----hhHHHHHhhcc----ceEEEEcCh-HHHHH---HHh---
Q 021362 205 YAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFD----EKWFIEVDL-DTAMQ---RVL--- 269 (313)
Q Consensus 205 ~~~~LSgG~kqRv~ia~al~~~ar~Li~d~~~lllDE----~~~~~l~~l~~----~~i~vtHd~-~~~~~---rv~--- 269 (313)
.+..|||||||||+||++++.+++++++|+++..||. ++.+.|+++.+ ..++++|++ +++.. +++
T Consensus 333 ~~rglSGGerkRVsia~aL~~~p~vlllDEPTsGLDs~t~~~i~~~Lr~la~~~g~Tviis~Hqp~~~i~~lfD~vilL~ 412 (1470)
T PLN03140 333 MIRGISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHLTEATVLMSLLQPAPETFDLFDDIILLS 412 (1470)
T ss_pred cccCCCcccceeeeehhhhcCCCcEEEEeCCCcCccHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHHhheEEEee
Confidence 6679999999999999999999999999999999999 66677777643 236888986 45544 555
Q ss_pred -hcccccCCchHHHH
Q 021362 270 -KRHISTGKPPDVAK 283 (313)
Q Consensus 270 -griv~~G~~~ev~~ 283 (313)
|+++..|+++++..
T Consensus 413 ~G~ivy~G~~~~~~~ 427 (1470)
T PLN03140 413 EGQIVYQGPRDHILE 427 (1470)
T ss_pred CceEEEeCCHHHHHH
Confidence 99999999888754
|
|
| >TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein | Back alignment and domain information |
|---|
Probab=99.94 E-value=5.4e-27 Score=254.46 Aligned_cols=188 Identities=12% Similarity=0.028 Sum_probs=145.4
Q ss_pred cccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhccc-CCCCceeecCCCCC-------CCeEEEEecCCCCCCcc
Q 021362 94 LLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKI-WPQKASSFDSQVKP-------PDVATVLPMDGFHLYLS 165 (313)
Q Consensus 94 ~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~-~p~~G~i~~~g~~~-------~~~i~~v~qd~~~~~~~ 165 (313)
..+|+|+|+++++||+++|+||||||||||+|+|+|+.... .|++|+|.++|.+. ++.++|++|++.+++
T Consensus 74 ~~iL~~vs~~i~~Ge~~aIlG~nGsGKSTLLk~LaG~~~~~~~~~~G~I~~~G~~~~~~~~~~r~~i~yv~Q~d~~~~-- 151 (1394)
T TIGR00956 74 FDILKPMDGLIKPGELTVVLGRPGSGCSTLLKTIASNTDGFHIGVEGVITYDGITPEEIKKHYRGDVVYNAETDVHFP-- 151 (1394)
T ss_pred ceeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCCCceeEEEECCEehHHHHhhcCceeEEeccccccCC--
Confidence 34999999999999999999999999999999999986211 17999999999653 234899999976655
Q ss_pred cCCcccChHHHHHhcC-------CCCCccHHH-HHHHHHHhhcC--CC-----ccCCCCCCcCCCcchhhhhhccCceEE
Q 021362 166 QLDAMEDPKEAHARRG-------APWTFNPLL-LLNCLKNLRNQ--GS-----VYAPSFDHGVGDPVEDDILVGLQHKVV 230 (313)
Q Consensus 166 ~ltv~e~~~~~~~~~~-------~~~~~~~~~-~~~~l~~l~~~--~~-----~~~~~LSgG~kqRv~ia~al~~~ar~L 230 (313)
.+||.|++.+....+. ....+..++ ..++++.++.. .+ ..+..|||||||||+||++++.+++++
T Consensus 152 ~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGerkRvsIA~aL~~~p~vl 231 (1394)
T TIGR00956 152 HLTVGETLDFAARCKTPQNRPDGVSREEYAKHIADVYMATYGLSHTRNTKVGNDFVRGVSGGERKRVSIAEASLGGAKIQ 231 (1394)
T ss_pred CCCHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHHHHHcCcccccCceeCCCcCCCCCcccchHHHHHHHHHhCCCEE
Confidence 4899999999765432 111111122 34578888743 22 245689999999999999999999999
Q ss_pred EEcCCccccCh----hhHHHHHhhccc----eEEEEcCh-HHHHH---HHh----hcccccCCchHHHH
Q 021362 231 IVDGNYLFLDG----GVWKDVSSMFDE----KWFIEVDL-DTAMQ---RVL----KRHISTGKPPDVAK 283 (313)
Q Consensus 231 i~d~~~lllDE----~~~~~l~~l~~~----~i~vtHd~-~~~~~---rv~----griv~~G~~~ev~~ 283 (313)
++|+|+..||. .+.+.|+++.++ .++++|++ +.+.. +++ |+++..|++.++..
T Consensus 232 llDEPTsgLD~~~~~~i~~~L~~la~~~g~tvii~~Hq~~~~i~~l~D~v~~L~~G~iv~~G~~~~~~~ 300 (1394)
T TIGR00956 232 CWDNATRGLDSATALEFIRALKTSANILDTTPLVAIYQCSQDAYELFDKVIVLYEGYQIYFGPADKAKQ 300 (1394)
T ss_pred EEeCCCCCcCHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEeCCeEEEECCHHHHHH
Confidence 99999999999 677777777542 36888996 45544 555 99999999887743
|
|
| >TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP) | Back alignment and domain information |
|---|
Probab=99.94 E-value=5.4e-27 Score=256.71 Aligned_cols=187 Identities=12% Similarity=0.112 Sum_probs=145.9
Q ss_pred EEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCCCCeEEEEe
Q 021362 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLP 156 (313)
Q Consensus 77 ~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~~~~i~~v~ 156 (313)
.|+++|+++.|++. ...+|+|+||+|++|++++|+||||||||||+++|+|+++ |++|+|.++| .++|++
T Consensus 636 ~i~~~~~~~~~~~~--~~~~l~~isl~i~~G~~v~IvG~~GsGKSTLl~~l~g~~~---~~~G~i~~~g-----~i~yv~ 705 (1522)
T TIGR00957 636 SITVHNATFTWARD--LPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMD---KVEGHVHMKG-----SVAYVP 705 (1522)
T ss_pred cEEEEEeEEEcCCC--CCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCc---cCCcEEEECC-----EEEEEc
Confidence 59999999999752 1238999999999999999999999999999999999999 9999999986 599999
Q ss_pred cCCCCCCcccCCcccChHHHHHhcCCCCCccHHHHHHHH------HHhh---cCC----CccCCCCCCcCCCcchhhhhh
Q 021362 157 MDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCL------KNLR---NQG----SVYAPSFDHGVGDPVEDDILV 223 (313)
Q Consensus 157 qd~~~~~~~~ltv~e~~~~~~~~~~~~~~~~~~~~~~~l------~~l~---~~~----~~~~~~LSgG~kqRv~ia~al 223 (313)
|++..+ + .|++||+.++.. .+.++..+++ +.++ .+. ..+..+||||||||++||||+
T Consensus 706 Q~~~l~-~--~Ti~eNI~~g~~-------~~~~~~~~~~~~~~l~~~l~~~~~g~~t~ig~~g~~LSGGQkqRiaLARAl 775 (1522)
T TIGR00957 706 QQAWIQ-N--DSLRENILFGKA-------LNEKYYQQVLEACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAV 775 (1522)
T ss_pred CCcccc-C--CcHHHHhhcCCc-------cCHHHHHHHHHHhCCHHHHHhcCCCCCceecCCCCCCCHHHHHHHHHHHHH
Confidence 997643 2 699999987521 1222222222 2222 121 234559999999999999999
Q ss_pred ccCceEEEEcCCccccChhhHHHHHhhc---------cceEEEEcChHHHHH--HHh----hcccccCCchHHHH
Q 021362 224 GLQHKVVIVDGNYLFLDGGVWKDVSSMF---------DEKWFIEVDLDTAMQ--RVL----KRHISTGKPPDVAK 283 (313)
Q Consensus 224 ~~~ar~Li~d~~~lllDE~~~~~l~~l~---------~~~i~vtHd~~~~~~--rv~----griv~~G~~~ev~~ 283 (313)
..+++++++|+++.-||.+..+.+.+.. ...|+|||+++.+.. +++ |++++.|+.+++..
T Consensus 776 ~~~~~illLDEp~saLD~~~~~~i~~~l~~~~~~~~~~tvIlvTH~~~~l~~~D~ii~l~~G~i~~~g~~~~l~~ 850 (1522)
T TIGR00957 776 YSNADIYLFDDPLSAVDAHVGKHIFEHVIGPEGVLKNKTRILVTHGISYLPQVDVIIVMSGGKISEMGSYQELLQ 850 (1522)
T ss_pred hcCCCEEEEcCCccccCHHHHHHHHHHHhhhhhhhcCCEEEEEeCChhhhhhCCEEEEecCCeEEeeCCHHHHHh
Confidence 9999999999999999994443333221 124799999998877 555 89999999888764
|
This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved. |
| >PRK13409 putative ATPase RIL; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=4.2e-27 Score=236.13 Aligned_cols=169 Identities=14% Similarity=-0.012 Sum_probs=131.4
Q ss_pred ccceEEcccc-ccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceee-----------cCCCCC
Q 021362 81 RCMDEVYDAL-AQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSF-----------DSQVKP 148 (313)
Q Consensus 81 ~~l~~~y~~~-~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~-----------~~g~~~ 148 (313)
+++++.||.+ . +|++++ .+++|+++||+||||||||||+|+|+|+++ |++|+|. ++|.+.
T Consensus 77 ~~~~~~yg~~~~----~L~~l~-~i~~Gev~gLvG~NGaGKSTLlkiL~G~l~---p~~G~i~~~~~~~~~~~~~~G~~l 148 (590)
T PRK13409 77 EEPVHRYGVNGF----KLYGLP-IPKEGKVTGILGPNGIGKTTAVKILSGELI---PNLGDYEEEPSWDEVLKRFRGTEL 148 (590)
T ss_pred cCceEEecCCce----eEecCC-cCCCCCEEEEECCCCCCHHHHHHHHhCCcc---CCCccccCCCcHHHHHHHhCChHH
Confidence 3488999863 4 899999 999999999999999999999999999999 9999997 777652
Q ss_pred C----------CeEEEEecCCCCCCc-ccCCcccChHHHHHhcCCCCCccHHHHHHHHHHhhc--CCCccCCCCCCcCCC
Q 021362 149 P----------DVATVLPMDGFHLYL-SQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGD 215 (313)
Q Consensus 149 ~----------~~i~~v~qd~~~~~~-~~ltv~e~~~~~~~~~~~~~~~~~~~~~~~l~~l~~--~~~~~~~~LSgG~kq 215 (313)
. ..+++.+|.....+. ...|+.|++... ...+++.++++.++. ..++.+.+|||||+|
T Consensus 149 ~~~~~~~~~~~~~~~~~~q~~~~~p~~~~~tv~e~l~~~---------~~~~~~~~~l~~l~l~~~~~~~~~~LSgGe~q 219 (590)
T PRK13409 149 QNYFKKLYNGEIKVVHKPQYVDLIPKVFKGKVRELLKKV---------DERGKLDEVVERLGLENILDRDISELSGGELQ 219 (590)
T ss_pred HHHHHHHhccCcceeecccchhhhhhhhcchHHHHHHhh---------hHHHHHHHHHHHcCCchhhcCChhhCCHHHHH
Confidence 1 224555554322211 013677766421 134567888888884 346788899999999
Q ss_pred cchhhhhhccCceEEEEcCCccccCh----hhHHHHHhhcc--ceEEEEcChHHHHH
Q 021362 216 PVEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFD--EKWFIEVDLDTAMQ 266 (313)
Q Consensus 216 Rv~ia~al~~~ar~Li~d~~~lllDE----~~~~~l~~l~~--~~i~vtHd~~~~~~ 266 (313)
|++||++++.++++|++|+|+..||. .+++.|+++.+ ..++||||++++..
T Consensus 220 rv~ia~al~~~p~lllLDEPts~LD~~~~~~l~~~i~~l~~g~tvIivsHd~~~l~~ 276 (590)
T PRK13409 220 RVAIAAALLRDADFYFFDEPTSYLDIRQRLNVARLIRELAEGKYVLVVEHDLAVLDY 276 (590)
T ss_pred HHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHH
Confidence 99999999999999999999999999 45666666543 34799999999876
|
|
| >PLN03073 ABC transporter F family; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.6e-27 Score=243.42 Aligned_cols=200 Identities=11% Similarity=0.041 Sum_probs=131.3
Q ss_pred CccEEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCCC----
Q 021362 74 EIPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPP---- 149 (313)
Q Consensus 74 ~m~~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~~---- 149 (313)
.+.+|+++|+++.|++.. +|+|+||+|.+|+++||+||||||||||||+|+|....-+|++|+|.+.++...
T Consensus 174 ~~~~I~i~nls~~y~~~~----ll~~isl~i~~Ge~~gLvG~NGsGKSTLLr~l~g~~~~g~p~~g~I~~~~Q~~~g~~~ 249 (718)
T PLN03073 174 AIKDIHMENFSISVGGRD----LIVDASVTLAFGRHYGLVGRNGTGKTTFLRYMAMHAIDGIPKNCQILHVEQEVVGDDT 249 (718)
T ss_pred CceeEEEceEEEEeCCCE----EEECCEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCCCCEEEEEeccCCCCCC
Confidence 345899999999998776 999999999999999999999999999999999964100277777654322100
Q ss_pred ------------------CeEEEEecCCCCCCcccCCcccChHHHHHhcCCCCC-------------------ccHHHHH
Q 021362 150 ------------------DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWT-------------------FNPLLLL 192 (313)
Q Consensus 150 ------------------~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~~~-------------------~~~~~~~ 192 (313)
..+++++|++.... .++.++... ....+.+.. ....++.
T Consensus 250 t~~~~v~~~~~~~~~~~~~~~~~~~q~~~l~~---~~~~~~~~~-~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~r~~ 325 (718)
T PLN03073 250 TALQCVLNTDIERTQLLEEEAQLVAQQRELEF---ETETGKGKG-ANKDGVDKDAVSQRLEEIYKRLELIDAYTAEARAA 325 (718)
T ss_pred CHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhh---ccccccccc-ccccccchHHHHHHHHHHHHHHHhcCcchHHHHHH
Confidence 00112222110000 000000000 000011111 1233455
Q ss_pred HHHHHhhcC---CCccCCCCCCcCCCcchhhhhhccCceEEEEcCCccccChh----hHHHHHhhccceEEEEcChHHHH
Q 021362 193 NCLKNLRNQ---GSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGG----VWKDVSSMFDEKWFIEVDLDTAM 265 (313)
Q Consensus 193 ~~l~~l~~~---~~~~~~~LSgG~kqRv~ia~al~~~ar~Li~d~~~lllDE~----~~~~l~~l~~~~i~vtHd~~~~~ 265 (313)
++|..++.. .++++.+||||||||++||++++.++++|++|+|+..||.. +.+.|+++....|+||||++++.
T Consensus 326 ~~L~~lgl~~~~~~~~~~~LSgG~k~rv~LA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~~~tviivsHd~~~l~ 405 (718)
T PLN03073 326 SILAGLSFTPEMQVKATKTFSGGWRMRIALARALFIEPDLLLLDEPTNHLDLHAVLWLETYLLKWPKTFIVVSHAREFLN 405 (718)
T ss_pred HHHHHCCCChHHHhCchhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHcCCEEEEEECCHHHHH
Confidence 566666642 35567799999999999999999999999999999999994 44444444334579999999987
Q ss_pred H---HHh----hccc-ccCCchHH
Q 021362 266 Q---RVL----KRHI-STGKPPDV 281 (313)
Q Consensus 266 ~---rv~----griv-~~G~~~ev 281 (313)
. +++ |+++ ..|...++
T Consensus 406 ~~~d~i~~l~~g~i~~~~g~~~~~ 429 (718)
T PLN03073 406 TVVTDILHLHGQKLVTYKGDYDTF 429 (718)
T ss_pred HhCCEEEEEECCEEEEeCCCHHHH
Confidence 6 555 7776 46765544
|
|
| >PLN03232 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=5.9e-27 Score=256.11 Aligned_cols=189 Identities=14% Similarity=0.144 Sum_probs=147.6
Q ss_pred EEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCCCCeEEEEe
Q 021362 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLP 156 (313)
Q Consensus 77 ~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~~~~i~~v~ 156 (313)
.|+++|+++.|+... ...+|+|+||+|++|+.++|+||+|||||||+++|.|+++ |++|.+.. .+..++|++
T Consensus 614 ~I~~~~vsF~y~~~~-~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~---~~~G~i~~----~~~~Iayv~ 685 (1495)
T PLN03232 614 AISIKNGYFSWDSKT-SKPTLSDINLEIPVGSLVAIVGGTGEGKTSLISAMLGELS---HAETSSVV----IRGSVAYVP 685 (1495)
T ss_pred cEEEEeeEEEcCCCC-CCceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCc---ccCCCEEE----ecCcEEEEc
Confidence 599999999997421 1238999999999999999999999999999999999999 99987642 345799999
Q ss_pred cCCCCCCcccCCcccChHHHHHhcCCCCCccHHHHHHHHHHhh---------cCCCcc----CCCCCCcCCCcchhhhhh
Q 021362 157 MDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLR---------NQGSVY----APSFDHGVGDPVEDDILV 223 (313)
Q Consensus 157 qd~~~~~~~~ltv~e~~~~~~~~~~~~~~~~~~~~~~~l~~l~---------~~~~~~----~~~LSgG~kqRv~ia~al 223 (313)
|+++.+. -|++||+.++. + .+.+++.++++..+ .+.+.. ...||||||||++||||+
T Consensus 686 Q~p~Lf~---gTIreNI~fg~-----~--~~~e~~~~vl~~~~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQRIaLARAl 755 (1495)
T PLN03232 686 QVSWIFN---ATVRENILFGS-----D--FESERYWRAIDVTALQHDLDLLPGRDLTEIGERGVNISGGQKQRVSMARAV 755 (1495)
T ss_pred Ccccccc---ccHHHHhhcCC-----c--cCHHHHHHHHHHhCCHHHHHhCCCCCCceecCCCcccCHHHHHHHHHHHHH
Confidence 9987654 59999998752 1 24455555555443 122222 237999999999999999
Q ss_pred ccCceEEEEcCCccccChhhHHHH-----Hhhcc--ceEEEEcChHHHHH--HHh----hcccccCCchHHHH
Q 021362 224 GLQHKVVIVDGNYLFLDGGVWKDV-----SSMFD--EKWFIEVDLDTAMQ--RVL----KRHISTGKPPDVAK 283 (313)
Q Consensus 224 ~~~ar~Li~d~~~lllDE~~~~~l-----~~l~~--~~i~vtHd~~~~~~--rv~----griv~~G~~~ev~~ 283 (313)
..+++++++|+++.-||.+.-+.+ ....+ ..|+|||+++.... +++ |++++.|+.+++..
T Consensus 756 y~~~~IlLLDEptSaLD~~t~~~I~~~~l~~~l~~kT~IlvTH~~~~l~~aD~Ii~L~~G~i~~~Gt~~eL~~ 828 (1495)
T PLN03232 756 YSNSDIYIFDDPLSALDAHVAHQVFDSCMKDELKGKTRVLVTNQLHFLPLMDRIILVSEGMIKEEGTFAELSK 828 (1495)
T ss_pred hcCCCEEEEcCCccccCHHHHHHHHHHHhhhhhcCCEEEEEECChhhHHhCCEEEEEeCCEEEEecCHHHHHh
Confidence 999999999999999998443322 22222 35799999998776 555 99999999888764
|
|
| >cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.1e-26 Score=199.17 Aligned_cols=131 Identities=18% Similarity=0.132 Sum_probs=101.5
Q ss_pred ccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCC---CCeEEEEecCCCCCCcccCCccc
Q 021362 95 LPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP---PDVATVLPMDGFHLYLSQLDAME 171 (313)
Q Consensus 95 ~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~---~~~i~~v~qd~~~~~~~~ltv~e 171 (313)
.+|+|+||++++|++++|+||||||||||+|+|. +++|++.+++... ...++|++|
T Consensus 9 ~~l~~isl~i~~G~~~~l~G~nG~GKSTLl~~il-------~~~G~v~~~~~~~~~~~~~~~~~~q-------------- 67 (176)
T cd03238 9 HNLQNLDVSIPLNVLVVVTGVSGSGKSTLVNEGL-------YASGKARLISFLPKFSRNKLIFIDQ-------------- 67 (176)
T ss_pred eeecceEEEEcCCCEEEEECCCCCCHHHHHHHHh-------hcCCcEEECCcccccccccEEEEhH--------------
Confidence 4899999999999999999999999999999873 5689988776421 011222222
Q ss_pred ChHHHHHhcCCCCCccHHHHHHHHHHhhcC---CCccCCCCCCcCCCcchhhhhhccC--ceEEEEcCCccccCh----h
Q 021362 172 DPKEAHARRGAPWTFNPLLLLNCLKNLRNQ---GSVYAPSFDHGVGDPVEDDILVGLQ--HKVVIVDGNYLFLDG----G 242 (313)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~---~~~~~~~LSgG~kqRv~ia~al~~~--ar~Li~d~~~lllDE----~ 242 (313)
.++++.++.. .+.++.+||+||+||+++|++++.+ ++++++|+|+..||. .
T Consensus 68 --------------------~~~l~~~~L~~~~~~~~~~~LSgGq~qrl~laral~~~~~p~llLlDEPt~~LD~~~~~~ 127 (176)
T cd03238 68 --------------------LQFLIDVGLGYLTLGQKLSTLSGGELQRVKLASELFSEPPGTLFILDEPSTGLHQQDINQ 127 (176)
T ss_pred --------------------HHHHHHcCCCccccCCCcCcCCHHHHHHHHHHHHHhhCCCCCEEEEeCCcccCCHHHHHH
Confidence 3456666632 4567789999999999999999999 999999999999999 4
Q ss_pred hHHHHHhhccc---eEEEEcChHHHHH
Q 021362 243 VWKDVSSMFDE---KWFIEVDLDTAMQ 266 (313)
Q Consensus 243 ~~~~l~~l~~~---~i~vtHd~~~~~~ 266 (313)
+.+.|+++.+. .|++||+++++..
T Consensus 128 l~~~l~~~~~~g~tvIivSH~~~~~~~ 154 (176)
T cd03238 128 LLEVIKGLIDLGNTVILIEHNLDVLSS 154 (176)
T ss_pred HHHHHHHHHhCCCEEEEEeCCHHHHHh
Confidence 44555554322 4799999998643
|
Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases. |
| >cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.4e-26 Score=193.55 Aligned_cols=129 Identities=17% Similarity=0.199 Sum_probs=109.5
Q ss_pred EccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCCC--------Ce
Q 021362 80 ARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPP--------DV 151 (313)
Q Consensus 80 ~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~~--------~~ 151 (313)
++++++.|.+.. +++++||++++|++++|+|+||||||||+++|+|+++ |++|+|+++|.+.. ..
T Consensus 2 ~~~~~~~~~~~~----~l~~~~~~i~~g~~~~i~G~nGsGKStll~~l~g~~~---~~~G~i~~~~~~~~~~~~~~~~~~ 74 (157)
T cd00267 2 IENLSFRYGGRT----ALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLK---PTSGEILIDGKDIAKLPLEELRRR 74 (157)
T ss_pred eEEEEEEeCCee----eEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCccEEEECCEEcccCCHHHHHhc
Confidence 578999997765 9999999999999999999999999999999999999 99999999885422 22
Q ss_pred EEEEecCCCCCCcccCCcccChHHHHHhcCCCCCccHHHHHHHHHHhhcCCCccCCCCCCcCCCcchhhhhhccCceEEE
Q 021362 152 ATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVI 231 (313)
Q Consensus 152 i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~LSgG~kqRv~ia~al~~~ar~Li 231 (313)
++|++| ||+||+||++|+++++.++++++
T Consensus 75 i~~~~q---------------------------------------------------lS~G~~~r~~l~~~l~~~~~i~i 103 (157)
T cd00267 75 IGYVPQ---------------------------------------------------LSGGQRQRVALARALLLNPDLLL 103 (157)
T ss_pred eEEEee---------------------------------------------------CCHHHHHHHHHHHHHhcCCCEEE
Confidence 444443 99999999999999999999999
Q ss_pred EcCCccccCh----hhHHHHHhhcc---ceEEEEcChHHHHH
Q 021362 232 VDGNYLFLDG----GVWKDVSSMFD---EKWFIEVDLDTAMQ 266 (313)
Q Consensus 232 ~d~~~lllDE----~~~~~l~~l~~---~~i~vtHd~~~~~~ 266 (313)
+|+|+..||. .+++.+.++.. ..+++||+++++..
T Consensus 104 lDEp~~~lD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~ 145 (157)
T cd00267 104 LDEPTSGLDPASRERLLELLRELAEEGRTVIIVTHDPELAEL 145 (157)
T ss_pred EeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHH
Confidence 9999999998 45555555544 24699999998865
|
The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.93 E-value=4.3e-26 Score=224.49 Aligned_cols=175 Identities=15% Similarity=0.089 Sum_probs=142.9
Q ss_pred ccEEEEccceEEcccc-ccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCCCCeEE
Q 021362 75 IPVVEARCMDEVYDAL-AQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVAT 153 (313)
Q Consensus 75 m~~l~~~~l~~~y~~~-~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~~~~i~ 153 (313)
-++++++|+++.|++. . +++++||.|.+|+.+||+||||+|||||+|+|+|.+. |.+|+|.++. .-.+|
T Consensus 319 ~~vl~~~~~~~~y~~~~~----l~~~~s~~i~~g~riaiiG~NG~GKSTLlk~l~g~~~---~~~G~v~~g~---~v~ig 388 (530)
T COG0488 319 KLVLEFENVSKGYDGGRL----LLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGELG---PLSGTVKVGE---TVKIG 388 (530)
T ss_pred CeeEEEeccccccCCCce----eecCceEEecCCCEEEEECCCCCCHHHHHHHHhhhcc---cCCceEEeCC---ceEEE
Confidence 3589999999999764 5 8999999999999999999999999999999999999 9999999863 34699
Q ss_pred EEecCCCCCCcccCCcccChHHHHHhcCCCCCccHHHHHHHHHHhhcC---CCccCCCCCCcCCCcchhhhhhccCceEE
Q 021362 154 VLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ---GSVYAPSFDHGVGDPVEDDILVGLQHKVV 230 (313)
Q Consensus 154 ~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~---~~~~~~~LSgG~kqRv~ia~al~~~ar~L 230 (313)
|+.|+...+. ...|+.+++... .+ ......+...|.+++.. ..+++..||||||-|+.+|..+..++.+|
T Consensus 389 yf~Q~~~~l~-~~~t~~d~l~~~-----~~-~~~e~~~r~~L~~f~F~~~~~~~~v~~LSGGEk~Rl~La~ll~~~pNvL 461 (530)
T COG0488 389 YFDQHRDELD-PDKTVLEELSEG-----FP-DGDEQEVRAYLGRFGFTGEDQEKPVGVLSGGEKARLLLAKLLLQPPNLL 461 (530)
T ss_pred EEEehhhhcC-ccCcHHHHHHhh-----Cc-cccHHHHHHHHHHcCCChHHHhCchhhcCHhHHHHHHHHHHhccCCCEE
Confidence 9999964433 345666665432 11 11256788899999833 35577799999999999999999999999
Q ss_pred EEcCCccccChhhHHHHHhhcc----ceEEEEcChHHHHH
Q 021362 231 IVDGNYLFLDGGVWKDVSSMFD----EKWFIEVDLDTAMQ 266 (313)
Q Consensus 231 i~d~~~lllDE~~~~~l~~l~~----~~i~vtHd~~~~~~ 266 (313)
++|+|+.-||-+.++.|.+... ..++||||..++..
T Consensus 462 iLDEPTNhLDi~s~~aLe~aL~~f~Gtvl~VSHDr~Fl~~ 501 (530)
T COG0488 462 LLDEPTNHLDIESLEALEEALLDFEGTVLLVSHDRYFLDR 501 (530)
T ss_pred EEcCCCccCCHHHHHHHHHHHHhCCCeEEEEeCCHHHHHh
Confidence 9999999999866666666554 35799999999876
|
|
| >TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Probab=99.93 E-value=2e-26 Score=251.75 Aligned_cols=173 Identities=11% Similarity=0.142 Sum_probs=133.9
Q ss_pred cccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCCCCeEEEEecCCCCCCcccCCcccChHH
Q 021362 96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKE 175 (313)
Q Consensus 96 ~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~~~~i~~v~qd~~~~~~~~ltv~e~~~~ 175 (313)
+|+|+||+|++|++++|+||||||||||+++|+|+++ |++|+|.++| .++|++|++..+. .|++||+.+
T Consensus 441 ~l~~i~l~i~~G~~~~I~G~~GsGKSTLl~~l~G~~~---~~~G~i~~~g-----~iayv~Q~~~l~~---~Ti~eNI~~ 509 (1490)
T TIGR01271 441 VLKNISFKLEKGQLLAVAGSTGSGKSSLLMMIMGELE---PSEGKIKHSG-----RISFSPQTSWIMP---GTIKDNIIF 509 (1490)
T ss_pred ceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCceEEECC-----EEEEEeCCCccCC---ccHHHHHHh
Confidence 8999999999999999999999999999999999999 9999999987 4899999976543 499999987
Q ss_pred HHHhcCCCCCccHHHH------HHHHHHhhcCC----CccCCCCCCcCCCcchhhhhhccCceEEEEcCCccccChhhHH
Q 021362 176 AHARRGAPWTFNPLLL------LNCLKNLRNQG----SVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWK 245 (313)
Q Consensus 176 ~~~~~~~~~~~~~~~~------~~~l~~l~~~~----~~~~~~LSgG~kqRv~ia~al~~~ar~Li~d~~~lllDE~~~~ 245 (313)
+... . ......+ .+.++.+..+. ..+...||||||||++||+|+..+++++++|+++..||.+..+
T Consensus 510 g~~~---~-~~~~~~~~~~~~L~~~l~~l~~g~~t~vg~~g~~LSgGqkqRi~lARAl~~~~~illLDep~saLD~~~~~ 585 (1490)
T TIGR01271 510 GLSY---D-EYRYTSVIKACQLEEDIALFPEKDKTVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFTHLDVVTEK 585 (1490)
T ss_pred cccc---c-hHHHHHHHHHHhHHHHHHhccccccccccCcCCCcCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHH
Confidence 6321 1 1111111 12222222222 2245699999999999999999999999999999999994444
Q ss_pred HHH-----hhcc--ceEEEEcChHHHHH--HHh----hcccccCCchHHHH
Q 021362 246 DVS-----SMFD--EKWFIEVDLDTAMQ--RVL----KRHISTGKPPDVAK 283 (313)
Q Consensus 246 ~l~-----~l~~--~~i~vtHd~~~~~~--rv~----griv~~G~~~ev~~ 283 (313)
.+. ++.+ ..|+|||+++.+.. |++ |+++..|+.+++..
T Consensus 586 ~i~~~~l~~~~~~~tvilvtH~~~~~~~ad~ii~l~~g~i~~~g~~~~l~~ 636 (1490)
T TIGR01271 586 EIFESCLCKLMSNKTRILVTSKLEHLKKADKILLLHEGVCYFYGTFSELQA 636 (1490)
T ss_pred HHHHHHHHHHhcCCeEEEEeCChHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 443 3322 34799999998876 555 88989999888764
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se. |
| >KOG0061 consensus Transporter, ABC superfamily (Breast cancer resistance protein) [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.92 E-value=3.2e-25 Score=223.19 Aligned_cols=205 Identities=12% Similarity=0.099 Sum_probs=161.2
Q ss_pred EEEEccceEEccccc-cccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCC-----CCC
Q 021362 77 VVEARCMDEVYDALA-QRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK-----PPD 150 (313)
Q Consensus 77 ~l~~~~l~~~y~~~~-~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~-----~~~ 150 (313)
-+..++++....++. ....+|+|||..+++||+.||+||+|||||||+++|+|....-...+|+|.+||+. .++
T Consensus 25 ~~~~~~~~~~~~~~~~~~k~iL~~vsg~~~~Gel~AimG~SGsGKtTLL~~Lagr~~~~~~~~G~ilvNG~~~~~~~~~~ 104 (613)
T KOG0061|consen 25 KLSFRNLTLSSKEKSKKTKTILKGVSGTAKPGELLAIMGPSGSGKTTLLNALAGRLNGGLKLSGEILLNGRPRDSRSFRK 104 (613)
T ss_pred eeEEEEEEEEecCCCCccceeeeCcEEEEecCeEEEEECCCCCCHHHHHHHHhccccCCCcceEEEEECCccCchhhhhh
Confidence 366677776664431 22449999999999999999999999999999999999986212478999999954 335
Q ss_pred eEEEEecCCCCCCcccCCcccChHHHHHhcC---CCCCccHHHHHHHHHHhhcC--CCccCC-----CCCCcCCCcchhh
Q 021362 151 VATVLPMDGFHLYLSQLDAMEDPKEAHARRG---APWTFNPLLLLNCLKNLRNQ--GSVYAP-----SFDHGVGDPVEDD 220 (313)
Q Consensus 151 ~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~---~~~~~~~~~~~~~l~~l~~~--~~~~~~-----~LSgG~kqRv~ia 220 (313)
..+||.||+..++ .+||+|.+.+.+..+- ....+..++++++++.+++. .+..++ .+|||||+||+||
T Consensus 105 ~s~yV~QdD~l~~--~LTV~EtL~f~A~lrlp~~~~~~~k~~~V~~vi~~LgL~~~~~t~ig~~~~rgiSGGErkRvsia 182 (613)
T KOG0061|consen 105 ISGYVQQDDVLLP--TLTVRETLRFSALLRLPSSLSKEEKRERVEEVISELGLEKCADTLIGNPGIRGLSGGERKRVSIA 182 (613)
T ss_pred eeEEEcccccccc--cccHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCChhhccceecCCCCCccccchhhHHHHH
Confidence 6899999977555 4999999999876542 12345667889999999854 444444 6999999999999
Q ss_pred hhhccCceEEEEcCCccccCh----hhHHHHHhhccce---EEEEcChHHHHH----HHh----hcccccCCchHHHH
Q 021362 221 ILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFDEK---WFIEVDLDTAMQ----RVL----KRHISTGKPPDVAK 283 (313)
Q Consensus 221 ~al~~~ar~Li~d~~~lllDE----~~~~~l~~l~~~~---i~vtHd~~~~~~----rv~----griv~~G~~~ev~~ 283 (313)
.-++.++.+|++|+|+..||. .+.+.|++++.++ |++-|.+.--.. +++ |+.+..|++.+...
T Consensus 183 ~Ell~~P~iLflDEPTSGLDS~sA~~vv~~Lk~lA~~grtVi~tIHQPss~lf~lFD~l~lLs~G~~vy~G~~~~~~~ 260 (613)
T KOG0061|consen 183 LELLTDPSILFLDEPTSGLDSFSALQVVQLLKRLARSGRTVICTIHQPSSELFELFDKLLLLSEGEVVYSGSPRELLE 260 (613)
T ss_pred HHHHcCCCEEEecCCCCCcchhhHHHHHHHHHHHHhCCCEEEEEEeCCcHHHHHHHhHhhhhcCCcEEEecCHHHHHH
Confidence 999999999999999999999 6777777777653 466688765443 555 99999999977654
|
|
| >PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.1e-26 Score=189.02 Aligned_cols=122 Identities=19% Similarity=0.169 Sum_probs=100.9
Q ss_pred ccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCCC--------CeEEEEecCCCCCCcccCC
Q 021362 97 TSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPP--------DVATVLPMDGFHLYLSQLD 168 (313)
Q Consensus 97 L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~~--------~~i~~v~qd~~~~~~~~lt 168 (313)
|+|+||+|++|++++|+|+||||||||+++|+|+.+ |++|+|.++|.+.. ..++|++|+...+. .+|
T Consensus 1 L~~v~~~i~~g~~~~i~G~nGsGKStLl~~l~g~~~---~~~G~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~--~~t 75 (137)
T PF00005_consen 1 LKNVSLEIKPGEIVAIVGPNGSGKSTLLKALAGLLP---PDSGSILINGKDISDIDIEELRRRIGYVPQDPQLFP--GLT 75 (137)
T ss_dssp EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSSH---ESEEEEEETTEEGTTSHHHHHHHTEEEEESSHCHHT--TSB
T ss_pred CCceEEEEcCCCEEEEEccCCCccccceeeeccccc---cccccccccccccccccccccccccccccccccccc--ccc
Confidence 689999999999999999999999999999999999 99999999987643 34999999954333 467
Q ss_pred cccChHHHHHhcCCCCCccHHHHHHHHHHhhc--CCCccC----CCCCCcCCCcchhhhhhccCceEEEEcCCc
Q 021362 169 AMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN--QGSVYA----PSFDHGVGDPVEDDILVGLQHKVVIVDGNY 236 (313)
Q Consensus 169 v~e~~~~~~~~~~~~~~~~~~~~~~~l~~l~~--~~~~~~----~~LSgG~kqRv~ia~al~~~ar~Li~d~~~ 236 (313)
+.+| ....++.++++.++. ..+..+ .+||+|||||++||++++.+++++++|+|+
T Consensus 76 v~~~-------------~~~~~~~~~l~~l~~~~~~~~~~~~~~~~LS~Ge~~rl~la~al~~~~~llllDEPt 136 (137)
T PF00005_consen 76 VREN-------------ESDERIEEVLKKLGLEDLLDRKIGQRASSLSGGEKQRLALARALLKNPKLLLLDEPT 136 (137)
T ss_dssp HHHH-------------HHHHHHHHHHHHTTHGGGTGSBGTSCGGGSCHHHHHHHHHHHHHHTTSSEEEEESTT
T ss_pred cccc-------------cccccccccccccccccccccccccccchhhHHHHHHHHHHHHHHcCCCEEEEeCCC
Confidence 7777 234567778887772 223444 899999999999999999999999998886
|
ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D .... |
| >PTZ00243 ABC transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=6.3e-25 Score=240.40 Aligned_cols=170 Identities=15% Similarity=0.121 Sum_probs=132.4
Q ss_pred cccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCCCCeEEEEecCCCCCCcccCCcccChHH
Q 021362 96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKE 175 (313)
Q Consensus 96 ~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~~~~i~~v~qd~~~~~~~~ltv~e~~~~ 175 (313)
+|+|+||+|++|++++|+||||||||||+++|+|+++ |++|+|.+. ..++|++|++.. ++ .|++||+.+
T Consensus 675 iL~~isl~i~~G~~~~IiG~nGsGKSTLL~~i~G~~~---~~~G~i~~~-----~~i~yv~Q~~~l-~~--~Tv~enI~~ 743 (1560)
T PTZ00243 675 LLRDVSVSVPRGKLTVVLGATGSGKSTLLQSLLSQFE---ISEGRVWAE-----RSIAYVPQQAWI-MN--ATVRGNILF 743 (1560)
T ss_pred eEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhcCCC---CCCcEEEEC-----CeEEEEeCCCcc-CC--CcHHHHHHc
Confidence 9999999999999999999999999999999999999 999999874 469999999764 33 699999987
Q ss_pred HHHhcCCCCCccHHHH---------HHHHHHhhc----CCCccCCCCCCcCCCcchhhhhhccCceEEEEcCCccccChh
Q 021362 176 AHARRGAPWTFNPLLL---------LNCLKNLRN----QGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGG 242 (313)
Q Consensus 176 ~~~~~~~~~~~~~~~~---------~~~l~~l~~----~~~~~~~~LSgG~kqRv~ia~al~~~ar~Li~d~~~lllDE~ 242 (313)
+.. .+.+++ .+.++.+.. ....+..+||||||||++||+|+..+++++++|+|+..||.+
T Consensus 744 ~~~-------~~~~~~~~~~~~~~l~~~l~~l~~g~~t~i~~~g~~LSGGQkqRvaLARAl~~~p~illLDEP~saLD~~ 816 (1560)
T PTZ00243 744 FDE-------EDAARLADAVRVSQLEADLAQLGGGLETEIGEKGVNLSGGQKARVSLARAVYANRDVYLLDDPLSALDAH 816 (1560)
T ss_pred CCh-------hhHHHHHHHHHHhhhHHHHHHhhccchHHhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHH
Confidence 421 111122 223333421 123456699999999999999999999999999999999984
Q ss_pred hHHHHHh-----hcc--ceEEEEcChHHHHH--HHh----hcccccCCchHHHH
Q 021362 243 VWKDVSS-----MFD--EKWFIEVDLDTAMQ--RVL----KRHISTGKPPDVAK 283 (313)
Q Consensus 243 ~~~~l~~-----l~~--~~i~vtHd~~~~~~--rv~----griv~~G~~~ev~~ 283 (313)
..+.+.+ ... ..|++|||++.+.. +++ |++++.|+.+++..
T Consensus 817 ~~~~i~~~~~~~~~~~~TvIlvTH~~~~~~~ad~ii~l~~G~i~~~G~~~~l~~ 870 (1560)
T PTZ00243 817 VGERVVEECFLGALAGKTRVLATHQVHVVPRADYVVALGDGRVEFSGSSADFMR 870 (1560)
T ss_pred HHHHHHHHHHHHhhCCCEEEEEeCCHHHHHhCCEEEEEECCEEEEecCHHHHHh
Confidence 3332221 222 34799999999866 555 89999999888754
|
|
| >COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.7e-25 Score=207.33 Aligned_cols=193 Identities=15% Similarity=0.116 Sum_probs=145.4
Q ss_pred EEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCCC-------
Q 021362 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPP------- 149 (313)
Q Consensus 77 ~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~~------- 149 (313)
.+.++++++.|+... ++|+++||++..|+.++++||+|+||||++++|..++. +++|.|.++|++.+
T Consensus 262 ~v~F~~V~F~y~~~r---~iL~~isf~i~~g~tvAiVg~SG~gKsTI~rllfRFyD---~~sG~I~id~qdir~vtq~sl 335 (497)
T COG5265 262 AVAFINVSFAYDPRR---PILNGISFTIPLGKTVAIVGESGAGKSTILRLLFRFYD---VNSGSITIDGQDIRDVTQQSL 335 (497)
T ss_pred eEEEEEEEeeccccc---hhhcCccccccCccEEEEEeCCCCcHHHHHHHHHHHhC---CcCceEEEcchhHHHhHHHHH
Confidence 488999999997643 39999999999999999999999999999999999999 99999999998843
Q ss_pred -CeEEEEecCCCCCCcccCCcccChHHHHHhcCCCCCccHHHHHHHHHH---------hhcCCCc----cCCCCCCcCCC
Q 021362 150 -DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKN---------LRNQGSV----YAPSFDHGVGD 215 (313)
Q Consensus 150 -~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~~~~~~~~~~~~l~~---------l~~~~~~----~~~~LSgG~kq 215 (313)
+.||++|||...+. -|.+.|+.++ .+...+. .+....+. +-.+-+. +.-.|||||||
T Consensus 336 R~aIg~VPQDtvLFN---Dti~yni~yg-----r~~at~e-ev~aaa~~aqi~~fi~~lP~gy~t~VgerglklSggekq 406 (497)
T COG5265 336 RRAIGIVPQDTVLFN---DTIAYNIKYG-----RPDATAE-EVGAAAEAAQIHDFIQSLPEGYDTGVGERGLKLSGGEKQ 406 (497)
T ss_pred HHHhCcCcccceehh---hhHHHHHhcc-----CccccHH-HHHHHHHHhhhhHHHHhCchhhhcccchheeeccCchHH
Confidence 45999999965444 2777777554 3332222 22222222 1122222 23389999999
Q ss_pred cchhhhhhccCceEEEEcCCccccCh----hhHHHHHhhcc--ceEEEEcChHHHHH--HHh----hcccccCCchHHHH
Q 021362 216 PVEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFD--EKWFIEVDLDTAMQ--RVL----KRHISTGKPPDVAK 283 (313)
Q Consensus 216 Rv~ia~al~~~ar~Li~d~~~lllDE----~~~~~l~~l~~--~~i~vtHd~~~~~~--rv~----griv~~G~~~ev~~ 283 (313)
||+||+++..+|++|++|+.+.-||- .+...|++... ..++|-|-+..+.. .++ |+++++|+-++++.
T Consensus 407 rvaiar~ilk~p~il~~deatsaldt~te~~iq~~l~~~~~~rttlviahrlsti~~adeiivl~~g~i~erg~h~~ll~ 486 (497)
T COG5265 407 RVAIARTILKNPPILILDEATSALDTHTEQAIQAALREVSAGRTTLVIAHRLSTIIDADEIIVLDNGRIVERGTHEELLA 486 (497)
T ss_pred HHHHHHHHhcCCCEEEEehhhhHhhhhHHHHHHHHHHHHhCCCeEEEEeehhhhccCCceEEEeeCCEEEecCcHHHHHH
Confidence 99998888888888888877777777 44555555543 25899999999877 444 99999999999876
Q ss_pred H
Q 021362 284 W 284 (313)
Q Consensus 284 ~ 284 (313)
.
T Consensus 487 ~ 487 (497)
T COG5265 487 A 487 (497)
T ss_pred c
Confidence 4
|
|
| >KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.9e-24 Score=228.47 Aligned_cols=193 Identities=18% Similarity=0.187 Sum_probs=159.5
Q ss_pred EEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCC--------
Q 021362 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP-------- 148 (313)
Q Consensus 77 ~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~-------- 148 (313)
-|+++|++.+|... -..+|+||||+|++||.|||+|..|||||||+++|-.+.. |.+|+|.+||.+.
T Consensus 1138 ~I~f~~~~~RYrp~--lp~VLk~is~~I~p~eKVGIVGRTGaGKSSL~~aLFRl~e---~~~G~I~IDgvdI~~igL~dL 1212 (1381)
T KOG0054|consen 1138 EIEFEDLSLRYRPN--LPLVLKGISFTIKPGEKVGIVGRTGAGKSSLILALFRLVE---PAEGEILIDGVDISKIGLHDL 1212 (1381)
T ss_pred eEEEEEeEEEeCCC--CcchhcCceEEEcCCceEEEeCCCCCCHHHHHHHHHHhcC---ccCCeEEEcCeecccccHHHH
Confidence 49999999999764 2239999999999999999999999999999999999999 9999999999874
Q ss_pred CCeEEEEecCCCCCCcccCCcccChHHHHHhcCCCCCccHHHHHHHHHHhh---------cCCCccC----CCCCCcCCC
Q 021362 149 PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLR---------NQGSVYA----PSFDHGVGD 215 (313)
Q Consensus 149 ~~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~~~~~~~~~~~~l~~l~---------~~~~~~~----~~LSgG~kq 215 (313)
+.+++++||||..+. =|++.|+.-. .+...+.+-++|++.. .+.+..+ .++|-||||
T Consensus 1213 RsrlsIIPQdPvLFs---GTvR~NLDPf-------~e~sD~~IW~ALe~~~Lk~~v~~~p~~Ld~~v~egG~N~SvGQRQ 1282 (1381)
T KOG0054|consen 1213 RSRLSIIPQDPVLFS---GTVRFNLDPF-------DEYSDDEIWEALERCQLKDVVSSLPGGLDSEVSEGGENFSVGQRQ 1282 (1381)
T ss_pred HhcCeeeCCCCceec---CccccccCcc-------cccCHHHHHHHHHHhChHHHHhhCCcCCCceecCCCccCChHHHH
Confidence 456999999987655 3899998532 1223344555555443 2333333 389999999
Q ss_pred cchhhhhhccCceEEEEcCCccccCh----hhHHHHHhhccc--eEEEEcChHHHHH--HHh----hcccccCCchHHHH
Q 021362 216 PVEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFDE--KWFIEVDLDTAMQ--RVL----KRHISTGKPPDVAK 283 (313)
Q Consensus 216 Rv~ia~al~~~ar~Li~d~~~lllDE----~~~~~l~~l~~~--~i~vtHd~~~~~~--rv~----griv~~G~~~ev~~ 283 (313)
.+++|||+.++.++|++|+.+.-.|. -+.+.|++.++. ++.|-|.++.++. ||+ |++++.|+|.+++.
T Consensus 1283 LlCLARALLr~skILvLDEATAsVD~~TD~lIQ~tIR~~F~dcTVltIAHRl~TVmd~DrVlVld~G~v~EfdsP~~Ll~ 1362 (1381)
T KOG0054|consen 1283 LLCLARALLRKSKILVLDEATASVDPETDALIQKTIREEFKDCTVLTIAHRLNTVMDSDRVLVLDAGRVVEFDSPAELLS 1362 (1381)
T ss_pred HHHHHHHHhccCCEEEEecccccCChHHHHHHHHHHHHHhcCCeEEEEeeccchhhhcCeEEEeeCCeEeecCChHHHHh
Confidence 99999999999999999999999999 567777777765 4688899999999 777 99999999999986
Q ss_pred H
Q 021362 284 W 284 (313)
Q Consensus 284 ~ 284 (313)
+
T Consensus 1363 ~ 1363 (1381)
T KOG0054|consen 1363 D 1363 (1381)
T ss_pred C
Confidence 5
|
|
| >cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.9e-24 Score=192.83 Aligned_cols=168 Identities=13% Similarity=0.041 Sum_probs=101.2
Q ss_pred cccccccccCCCcEEEEECCCCCcHHHHH-HHHHHHhcccC-----CCCc----eeecCC--CCCCCeEEEEecCCCCCC
Q 021362 96 PTSALASNVNVKHIVGLAGPPGAGKSTLA-AEVVRRINKIW-----PQKA----SSFDSQ--VKPPDVATVLPMDGFHLY 163 (313)
Q Consensus 96 ~L~~vsl~i~~Geiv~l~GpNGsGKSTLl-k~l~gl~~~~~-----p~~G----~i~~~g--~~~~~~i~~v~qd~~~~~ 163 (313)
+|+++||+|++||++||+||||||||||+ ..|...-+..+ |..+ .+.... ........+..+++....
T Consensus 10 ~l~~vsl~i~~Ge~~~l~G~sGsGKSTL~~~~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (226)
T cd03270 10 NLKNVDVDIPRNKLVVITGVSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGQMDKPDVDSIEGLSPAIAIDQKTTSR 89 (226)
T ss_pred ccccceeecCCCcEEEEEcCCCCCHHHHHHHHHHHHHHHHHhhcccchhhhhhcccCccccccccCCCceEEecCCCCCC
Confidence 99999999999999999999999999996 44332100000 0000 010000 000112333444433222
Q ss_pred cccCCccc---ChHHHHHhcCCCCCccHHHHHHHHHHhhcC---CCccCCCCCCcCCCcchhhhhhccCc--eEEEEcCC
Q 021362 164 LSQLDAME---DPKEAHARRGAPWTFNPLLLLNCLKNLRNQ---GSVYAPSFDHGVGDPVEDDILVGLQH--KVVIVDGN 235 (313)
Q Consensus 164 ~~~ltv~e---~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~---~~~~~~~LSgG~kqRv~ia~al~~~a--r~Li~d~~ 235 (313)
++..++.. ...+....+ ... ......+.++.++.. .+.++.+|||||+||++||++++.++ ++|++|+|
T Consensus 90 ~~~~~v~~~~~~~~~~~~~~--~~~-~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~laral~~~p~~~llllDEP 166 (226)
T cd03270 90 NPRSTVGTVTEIYDYLRLLF--ARV-GIRERLGFLVDVGLGYLTLSRSAPTLSGGEAQRIRLATQIGSGLTGVLYVLDEP 166 (226)
T ss_pred CCCccHHHHHHHHHHHHHHh--hhh-hHHHHHHHHHHCCCCcccccCccCcCCHHHHHHHHHHHHHHhCCCCCEEEEeCC
Confidence 22223221 111111111 111 122235678888742 46678899999999999999999987 69999999
Q ss_pred ccccCh----hhHHHHHhhccc---eEEEEcChHHHHH
Q 021362 236 YLFLDG----GVWKDVSSMFDE---KWFIEVDLDTAMQ 266 (313)
Q Consensus 236 ~lllDE----~~~~~l~~l~~~---~i~vtHd~~~~~~ 266 (313)
+..||. .+.+.|+++.+. .|++|||++++..
T Consensus 167 t~gLD~~~~~~l~~~l~~~~~~g~tii~itH~~~~~~~ 204 (226)
T cd03270 167 SIGLHPRDNDRLIETLKRLRDLGNTVLVVEHDEDTIRA 204 (226)
T ss_pred ccCCCHHHHHHHHHHHHHHHhCCCEEEEEEeCHHHHHh
Confidence 999999 455555554432 4799999998643
|
Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases. |
| >KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.90 E-value=4.1e-24 Score=225.92 Aligned_cols=189 Identities=12% Similarity=0.138 Sum_probs=154.1
Q ss_pred cEEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCCCCeEEEE
Q 021362 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVL 155 (313)
Q Consensus 76 ~~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~~~~i~~v 155 (313)
+.++++|.+++.+.. .....|+||||+|++|+.++|+|+-|||||+|+.+|.|.++ ..+|++.++|. ++|+
T Consensus 517 ~~i~i~~~sfsW~~~-~~~~tL~dIn~~i~~G~lvaVvG~vGsGKSSLL~AiLGEm~---~~sG~v~v~gs-----iaYv 587 (1381)
T KOG0054|consen 517 NAIEIKNGSFSWDSE-SPEPTLKDINFEIKKGQLVAVVGPVGSGKSSLLSAILGEMP---KLSGSVAVNGS-----VAYV 587 (1381)
T ss_pred ceEEEeeeeEecCCC-CCcccccceeEEecCCCEEEEECCCCCCHHHHHHHHhcCcc---cccceEEEcCe-----EEEe
Confidence 369999999999862 33448999999999999999999999999999999999999 99999999874 8999
Q ss_pred ecCCCCCCcccCCcccChHHHHHhcCCCCCccHHHHHHHHHHhhc---------CCCc----cCCCCCCcCCCcchhhhh
Q 021362 156 PMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN---------QGSV----YAPSFDHGVGDPVEDDIL 222 (313)
Q Consensus 156 ~qd~~~~~~~~ltv~e~~~~~~~~~~~~~~~~~~~~~~~l~~l~~---------~~~~----~~~~LSgG~kqRv~ia~a 222 (313)
+|.+..+. -|++||+.|+. ..++++.+++++...+ +... +.-+||||||||+++|||
T Consensus 588 ~Q~pWI~n---gTvreNILFG~-------~~d~~rY~~Vi~aC~L~~Dle~Lp~GD~TeIGErGinLSGGQKqRIsLARA 657 (1381)
T KOG0054|consen 588 PQQPWIQN---GTVRENILFGS-------PYDEERYDKVIKACALKKDLEILPFGDLTEIGERGINLSGGQKQRISLARA 657 (1381)
T ss_pred ccccHhhC---CcHHHhhhcCc-------cccHHHHHHHHHHccCHhHHhhcCCCCcceecCCccCCcHhHHHHHHHHHH
Confidence 99987654 59999997752 3466777776665542 2222 333999999999999999
Q ss_pred hccCceEEEEcCCccccChhhHHHHH-----hhcc--ceEEEEcChHHHHH--HHh----hcccccCCchHHHH
Q 021362 223 VGLQHKVVIVDGNYLFLDGGVWKDVS-----SMFD--EKWFIEVDLDTAMQ--RVL----KRHISTGKPPDVAK 283 (313)
Q Consensus 223 l~~~ar~Li~d~~~lllDE~~~~~l~-----~l~~--~~i~vtHd~~~~~~--rv~----griv~~G~~~ev~~ 283 (313)
+-++|++.++|-|+.-+|.++-+.|- .+.+ ..|+|||.++.... .++ |++.+.|+.+|+.+
T Consensus 658 VY~~adIYLLDDplSAVDahvg~~if~~ci~~~L~~KT~ILVTHql~~L~~ad~Iivl~~G~I~~~Gty~el~~ 731 (1381)
T KOG0054|consen 658 VYQDADIYLLDDPLSAVDAHVGKHIFEECIRGLLRGKTVILVTHQLQFLPHADQIIVLKDGKIVESGTYEELLK 731 (1381)
T ss_pred HhccCCEEEEcCcchhhhHhhhHHHHHHHHHhhhcCCEEEEEeCchhhhhhCCEEEEecCCeEecccCHHHHHh
Confidence 99999999999999999995443333 2332 35799999988877 554 99999999999874
|
|
| >COG4138 BtuD ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.8e-23 Score=174.91 Aligned_cols=195 Identities=17% Similarity=0.136 Sum_probs=141.6
Q ss_pred cEEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCCC------
Q 021362 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPP------ 149 (313)
Q Consensus 76 ~~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~~------ 149 (313)
.+++++++...- -|-.+|.++..||++-++||||||||||+-.++|++ |-+|+|.++|.+..
T Consensus 2 ~l~qln~v~~~t--------RL~plS~qv~aGe~~HliGPNGaGKSTLLA~lAGm~----~~sGsi~~~G~~l~~~~~~e 69 (248)
T COG4138 2 ILMQLNDVAEST--------RLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMT----SGSGSIQFAGQPLEAWSATE 69 (248)
T ss_pred ceeeeccccccc--------cccccccccccceEEEEECCCCccHHHHHHHHhCCC----CCCceEEECCcchhHHhHhH
Confidence 368888887653 356788999999999999999999999999999999 89999999998742
Q ss_pred --CeEEEEecCCCCCCcccCCcccChHHHHHhcCCCCCccHHHHHHHHHHhh--cCCCccCCCCCCcCCCcchhhhhhc-
Q 021362 150 --DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLR--NQGSVYAPSFDHGVGDPVEDDILVG- 224 (313)
Q Consensus 150 --~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~~~~~~~~~~~~l~~l~--~~~~~~~~~LSgG~kqRv~ia~al~- 224 (313)
+.-+|+.|+....+ .|.|+..+.+. .|.......+.++...++ ++..+.+.+|||||=|||-+|..+.
T Consensus 70 LArhRAYLsQqq~p~f--~mpV~~YL~L~-----qP~~~~a~~i~~i~~~L~l~DKL~Rs~~qLSGGEWQRVRLAav~LQ 142 (248)
T COG4138 70 LARHRAYLSQQQTPPF--AMPVWHYLTLH-----QPDKTRTELLNDVAGALALDDKLGRSTNQLSGGEWQRVRLAAVVLQ 142 (248)
T ss_pred HHHHHHHHhhccCCcc--hhhhhhhhhhc-----CchHHHHHHHHHHHhhhcccchhhhhhhhcCcccceeeEEeEEEEE
Confidence 22357777644222 46777766542 343333344555666665 3445567799999999999966543
Q ss_pred ------cCceEEEEcCCccccCh----hhHHHHHhhccc---eEEEEcChHHHHH---HHh----hcccccCCchHHHHH
Q 021362 225 ------LQHKVVIVDGNYLFLDG----GVWKDVSSMFDE---KWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAKW 284 (313)
Q Consensus 225 ------~~ar~Li~d~~~lllDE----~~~~~l~~l~~~---~i~vtHd~~~~~~---rv~----griv~~G~~~ev~~~ 284 (313)
..++.|+.|+|..-||- .+-..|.+++.. +||..||++..++ ++. |+++..|..+|+...
T Consensus 143 v~Pd~NP~~~LLllDEP~~~LDvAQ~~aLdrll~~~c~~G~~vims~HDLNhTLrhA~~~wLL~rG~l~~~G~~~eVlt~ 222 (248)
T COG4138 143 ITPDANPAGQLLLLDEPMNSLDVAQQSALDRLLSALCQQGLAIVMSSHDLNHTLRHAHRAWLLKRGKLLASGRREEVLTP 222 (248)
T ss_pred ecCCCCccceeEEecCCCcchhHHHHHHHHHHHHHHHhCCcEEEEeccchhhHHHHHHHHHHHhcCeEEeecchhhhcCh
Confidence 35667777777777776 344555566655 4699999999888 443 999999999998766
Q ss_pred HHHhc
Q 021362 285 RIEYN 289 (313)
Q Consensus 285 ~~~~~ 289 (313)
.+...
T Consensus 223 ~vL~q 227 (248)
T COG4138 223 PVLAQ 227 (248)
T ss_pred HHHHH
Confidence 55443
|
|
| >cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function | Back alignment and domain information |
|---|
Probab=99.88 E-value=6e-23 Score=179.43 Aligned_cols=143 Identities=12% Similarity=0.040 Sum_probs=108.3
Q ss_pred cccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCC---------CceeecCCCCC-----CCeEEEEecCCCCCC
Q 021362 98 SALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQ---------KASSFDSQVKP-----PDVATVLPMDGFHLY 163 (313)
Q Consensus 98 ~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~---------~G~i~~~g~~~-----~~~i~~v~qd~~~~~ 163 (313)
+++++++.+| +++|+||||||||||+++|+|++. +. .|++.+.|.+. ...++++||++...+
T Consensus 14 ~~~~l~~~~g-~~~i~G~nGsGKStll~al~~l~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~vfq~~~~~~ 89 (197)
T cd03278 14 DKTTIPFPPG-LTAIVGPNGSGKSNIIDAIRWVLG---EQSAKSLRGEKMSDVIFAGSETRKPANFAEVTLTFDNSDGRY 89 (197)
T ss_pred CCeeeecCCC-cEEEECCCCCCHHHHHHHHHHHhc---cccchhhcccCHHHHhccCCCCCCCCceEEEEEEEEcCCCce
Confidence 6788999999 999999999999999999999986 44 24576666552 346899999864321
Q ss_pred cccCCcccChHHHHHhcCCCCCccHHHHHHHHHHhhcCCCccCCCCCCcCCCcchhhhhhc----cCceEEEEcCCcccc
Q 021362 164 LSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVG----LQHKVVIVDGNYLFL 239 (313)
Q Consensus 164 ~~~ltv~e~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~LSgG~kqRv~ia~al~----~~ar~Li~d~~~lll 239 (313)
+.. ..+++.++++. ....+..+.+||+|||||+++|++++ .+++++++|+|...+
T Consensus 90 -----------------~~~---~~~~~~~~l~~-~~~~~~~~~~LS~G~kqrl~la~~l~~~~~~~~~illlDEP~~~L 148 (197)
T cd03278 90 -----------------SII---SQGDVSEIIEA-PGKKVQRLSLLSGGEKALTALALLFAIFRVRPSPFCVLDEVDAAL 148 (197)
T ss_pred -----------------eEE---ehhhHHHHHhC-CCccccchhhcCHHHHHHHHHHHHHHHhccCCCCEEEEeCCcccC
Confidence 000 12455666666 44456677799999999999999986 466999999999999
Q ss_pred Ch----hhHHHHHhhccc--eEEEEcChHHHH
Q 021362 240 DG----GVWKDVSSMFDE--KWFIEVDLDTAM 265 (313)
Q Consensus 240 DE----~~~~~l~~l~~~--~i~vtHd~~~~~ 265 (313)
|+ .+++.|+++.+. .|++|||++++.
T Consensus 149 D~~~~~~l~~~l~~~~~~~tiIiitH~~~~~~ 180 (197)
T cd03278 149 DDANVERFARLLKEFSKETQFIVITHRKGTME 180 (197)
T ss_pred CHHHHHHHHHHHHHhccCCEEEEEECCHHHHh
Confidence 99 455555555432 579999999764
|
Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w |
| >COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.86 E-value=4.8e-22 Score=184.31 Aligned_cols=180 Identities=17% Similarity=0.141 Sum_probs=130.5
Q ss_pred cEEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCCCC-----
Q 021362 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPD----- 150 (313)
Q Consensus 76 ~~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~~~----- 150 (313)
.-||++|+.+.|.... .-+..||++|++||+|.|+|.||||||||++++.|+++ |++|+|.+||.+...
T Consensus 321 ~~lelrnvrfay~~~~---FhvgPiNl~ikrGelvFliG~NGsGKST~~~LLtGL~~---PqsG~I~ldg~pV~~e~led 394 (546)
T COG4615 321 KTLELRNVRFAYQDNA---FHVGPINLTIKRGELVFLIGGNGSGKSTLAMLLTGLYQ---PQSGEILLDGKPVSAEQLED 394 (546)
T ss_pred cceeeeeeeeccCccc---ceecceeeEEecCcEEEEECCCCCcHHHHHHHHhcccC---CCCCceeECCccCCCCCHHH
Confidence 3699999999998652 26789999999999999999999999999999999999 999999999987432
Q ss_pred ---eEEEEecCCCCCCcccCCcccChHHHHHhcCCCCCccHHHHHHHHHHhhcC-----CCc--cCCCCCCcCCCcchhh
Q 021362 151 ---VATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ-----GSV--YAPSFDHGVGDPVEDD 220 (313)
Q Consensus 151 ---~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~-----~~~--~~~~LSgG~kqRv~ia 220 (313)
.++-||-| |++++ ...|.......+.+...|+++... .+. ..-.||.|||+|+++-
T Consensus 395 YR~LfSavFsD-yhLF~-------------~ll~~e~~as~q~i~~~LqrLel~~ktsl~d~~fs~~kLStGQkKRlAll 460 (546)
T COG4615 395 YRKLFSAVFSD-YHLFD-------------QLLGPEGKASPQLIEKWLQRLELAHKTSLNDGRFSNLKLSTGQKKRLALL 460 (546)
T ss_pred HHHHHHHHhhh-HhhhH-------------hhhCCccCCChHHHHHHHHHHHHhhhhcccCCcccccccccchHHHHHHH
Confidence 13445555 44433 122222223456777888887722 122 3339999999999997
Q ss_pred hhhccCceEEEEcCCccccCh--------hhHHHHHhhccceEEEEcChHHHHH--HHh----hccccc
Q 021362 221 ILVGLQHKVVIVDGNYLFLDG--------GVWKDVSSMFDEKWFIEVDLDTAMQ--RVL----KRHIST 275 (313)
Q Consensus 221 ~al~~~ar~Li~d~~~lllDE--------~~~~~l~~l~~~~i~vtHd~~~~~~--rv~----griv~~ 275 (313)
.|++..-.++++|+.-.=-|+ .++..+++.-+.++.||||-.-... |++ |++++.
T Consensus 461 ~AllEeR~Ilv~DEWAADQDPaFRR~FY~~lLp~LK~qGKTI~aIsHDd~YF~~ADrll~~~~G~~~e~ 529 (546)
T COG4615 461 LALLEERDILVLDEWAADQDPAFRREFYQVLLPLLKEQGKTIFAISHDDHYFIHADRLLEMRNGQLSEL 529 (546)
T ss_pred HHHHhhCCeEEeehhhccCChHHHHHHHHHHhHHHHHhCCeEEEEecCchhhhhHHHHHHHhcCceeec
Confidence 777766666666665555555 4555666666667899998765444 665 888764
|
|
| >KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.7e-21 Score=186.73 Aligned_cols=179 Identities=16% Similarity=0.097 Sum_probs=135.9
Q ss_pred CccEEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCCCCeEE
Q 021362 74 EIPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVAT 153 (313)
Q Consensus 74 ~m~~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~~~~i~ 153 (313)
+-|+|.++|+++.|.+.. .++++++|-|..++.++++||||+|||||+|+++|.+. |..|.|.-.-. ..++
T Consensus 386 p~pvi~~~nv~F~y~~~~---~iy~~l~fgid~~srvAlVGPNG~GKsTLlKl~~gdl~---p~~G~vs~~~H---~~~~ 456 (614)
T KOG0927|consen 386 PPPVIMVQNVSFGYSDNP---MIYKKLNFGIDLDSRVALVGPNGAGKSTLLKLITGDLQ---PTIGMVSRHSH---NKLP 456 (614)
T ss_pred CCCeEEEeccccCCCCcc---hhhhhhhcccCcccceeEecCCCCchhhhHHHHhhccc---ccccccccccc---ccch
Confidence 346899999999998753 38999999999999999999999999999999999999 99999864321 1233
Q ss_pred EEecCCCCCCcccCCcccChHHHHHhcCCCCCccHHHHHHHHHHhhcC---CCccCCCCCCcCCCcchhhhhhccCceEE
Q 021362 154 VLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ---GSVYAPSFDHGVGDPVEDDILVGLQHKVV 230 (313)
Q Consensus 154 ~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~---~~~~~~~LSgG~kqRv~ia~al~~~ar~L 230 (313)
+..|......+-+.++.+++.- . .+.....+.+..+|.++|+. ...++.+||.|||.||.+|+.+..++.+|
T Consensus 457 ~y~Qh~~e~ldl~~s~le~~~~---~--~~~~~~~e~~r~ilgrfgLtgd~q~~p~~~LS~Gqr~rVlFa~l~~kqP~lL 531 (614)
T KOG0927|consen 457 RYNQHLAEQLDLDKSSLEFMMP---K--FPDEKELEEMRSILGRFGLTGDAQVVPMSQLSDGQRRRVLFARLAVKQPHLL 531 (614)
T ss_pred hhhhhhHhhcCcchhHHHHHHH---h--ccccchHHHHHHHHHHhCCCccccccchhhcccccchhHHHHHHHhcCCcEE
Confidence 4444422111112334443322 1 22234567788999999954 34567799999999999999999999999
Q ss_pred EEcCCccccChhhHHHHHhhcc----ceEEEEcChHHHHH
Q 021362 231 IVDGNYLFLDGGVWKDVSSMFD----EKWFIEVDLDTAMQ 266 (313)
Q Consensus 231 i~d~~~lllDE~~~~~l~~l~~----~~i~vtHd~~~~~~ 266 (313)
++|+|+-.||-+.++.+.+... ..|+||||+.++.+
T Consensus 532 lLDEPtnhLDi~tid~laeaiNe~~Ggvv~vSHDfrlI~q 571 (614)
T KOG0927|consen 532 LLDEPTNHLDIETIDALAEAINEFPGGVVLVSHDFRLISQ 571 (614)
T ss_pred EecCCCcCCCchhHHHHHHHHhccCCceeeeechhhHHHH
Confidence 9999999999866655555544 35799999999887
|
|
| >KOG2702 consensus Predicted panthothenate kinase/uridine kinase-related protein [Nucleotide transport and metabolism; Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.85 E-value=2.6e-21 Score=167.83 Aligned_cols=203 Identities=43% Similarity=0.713 Sum_probs=179.0
Q ss_pred cCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCCCCeEEEEecCCCCCCcccCCcccChHHHHHhcCCC
Q 021362 104 VNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAP 183 (313)
Q Consensus 104 i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~~~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~ 183 (313)
-+..+++|+.|+.|+||||++..+..- ||..-. -.+.+......++|+|+|++....+..+++...+..++|.|
T Consensus 116 ~n~~~l~glag~pGtgkst~~a~v~~a----Wp~~~~--~f~~e~i~iaiivPMDGFHlsr~~LD~f~dP~~AharRGap 189 (323)
T KOG2702|consen 116 SNNEELTGLAGRPGTGKSTRIAAVDNA----WPVNVN--KFAQESINIAIIVPMDGFHLSRRCLDLFKDPQTAHARRGAP 189 (323)
T ss_pred ccchheeeeecCCCCcchhHHHHHHhh----cchhhh--hhhhhhcceeEEecccchhhhHHHHHhhcChHHHHhhcCCC
Confidence 456789999999999999999888774 354311 11111222234599999999988899999999999999999
Q ss_pred CCccHHHHHHHHHHhh--cCCCccCCCCCCcCCCcchhhhhhccCceEEEEcCCccccChhhHHHHHhhccceEEEEcCh
Q 021362 184 WTFNPLLLLNCLKNLR--NQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEKWFIEVDL 261 (313)
Q Consensus 184 ~~~~~~~~~~~l~~l~--~~~~~~~~~LSgG~kqRv~ia~al~~~ar~Li~d~~~lllDE~~~~~l~~l~~~~i~vtHd~ 261 (313)
++++...+..+++.+. ...+.++|.+.+|-+..+.--..+....|++|+++.++++|+..|+.+.++++..+++.-|.
T Consensus 190 wTFD~~lfl~l~k~lkk~t~~~iyvPsFdHa~gDPv~DdicVs~~~rIvI~EGnYlLl~~~~Wkdi~k~~d~k~~idV~~ 269 (323)
T KOG2702|consen 190 WTFDSNLFLQLCKILKKTTIPDIYVPSFDHALGDPVPDDICVSKFTRIVILEGNYLLLDQENWKDIYKTLDDKYKIDVDY 269 (323)
T ss_pred cccCHHHHHHHHHHHhhcCCCceeccccccccCCCCccceeecccceEEEEeccEEEecCccHHHHHHHhhhheeccccH
Confidence 9999999999999998 66788999999999999999889999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhcccccC--CchHHHHHHHHhcCCchhHHhhhcccCccEEeecCC
Q 021362 262 DTAMQRVLKRHISTG--KPPDVAKWRIEYNDRPNAELIMKSKKNADLVIKSID 312 (313)
Q Consensus 262 ~~~~~rv~griv~~G--~~~ev~~~~~~~~~~~~~~~i~~~~~~ad~ii~~~~ 312 (313)
+.+++||..|.+..| .+.+...|++..|+++|.++|..+.-.+|++++..+
T Consensus 270 ~~a~~RVa~RHl~sGl~~t~~ea~er~d~ND~~N~~~I~k~~i~~D~iv~~~n 322 (323)
T KOG2702|consen 270 EAAEERVAKRHLQSGLVTTIAEARERFDSNDLLNGRDIDKHLIKVDNIVHIRN 322 (323)
T ss_pred HHHHHHHHHHhhcccccCCHHHHHhhcccccccchHHHHhcccchHHHHHhhc
Confidence 999999999999999 899999999999999999999999999999998654
|
|
| >COG4170 SapD ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.4e-21 Score=167.99 Aligned_cols=208 Identities=14% Similarity=0.207 Sum_probs=155.9
Q ss_pred ccEEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccC-CCCceeecCCCC------
Q 021362 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIW-PQKASSFDSQVK------ 147 (313)
Q Consensus 75 m~~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~-p~~G~i~~~g~~------ 147 (313)
|+++.+.||+..+....+.+++++++|+++++|||-||+|.+|||||-..|.|+|..+..| .+....++++.+
T Consensus 1 M~LLDIrnL~IE~~TsqG~vK~VD~v~ltlnEGEi~GLVGESGSGKSLiAK~Ic~v~kdnW~vTADR~Rf~~idLL~L~P 80 (330)
T COG4170 1 MPLLDIRNLTIEFKTSQGWVKAVDRVSMTLNEGEIRGLVGESGSGKSLIAKAICGVNKDNWRVTADRMRFDDIDLLRLSP 80 (330)
T ss_pred CCcccccceEEEEecCCCceEeeeeeeeeeccceeeeeeccCCCchhHHHHHHhcccccceEEEhhhcccccchhhcCCh
Confidence 6789999999999887788889999999999999999999999999999999999987555 334445566544
Q ss_pred ------CCCeEEEEecCCCCCCcccCCcc----cChHHHHHhcCCCC---CccHHHHHHHHHHhhcCCC-----ccCCCC
Q 021362 148 ------PPDVATVLPMDGFHLYLSQLDAM----EDPKEAHARRGAPW---TFNPLLLLNCLKNLRNQGS-----VYAPSF 209 (313)
Q Consensus 148 ------~~~~i~~v~qd~~~~~~~~ltv~----e~~~~~~~~~~~~~---~~~~~~~~~~l~~l~~~~~-----~~~~~L 209 (313)
..+.++++||++....++.-++. +|+-.. ...|..+ ...+.++.++|.++|.... .++.+|
T Consensus 81 r~RRk~ig~~isMIFQeP~sCLDPS~~iG~QlIq~IP~w-TfkgrWWq~F~WrKrrAIeLLHrVGIKdHkDIM~SYP~El 159 (330)
T COG4170 81 RERRKLVGHNVSMIFQEPQSCLDPSERVGRQLIQNIPAW-TYKGRWWQRFGWRKRRAIELLHRVGIKDHKDIMRSYPYEL 159 (330)
T ss_pred HHhhhhhccchhhhhcCchhhcChHHHHHHHHHhhCccc-cccchHhhhhchhHHHHHHHHHHhccccHHHHHHhCcchh
Confidence 12358899999765544332222 111110 0111111 2345678899999995433 356699
Q ss_pred CCcCCCcchhhhhhccCceEEEEcCCccccCh----hhHHHHHhhccc----eEEEEcChHHHHH---HH--h--hcccc
Q 021362 210 DHGVGDPVEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFDE----KWFIEVDLDTAMQ---RV--L--KRHIS 274 (313)
Q Consensus 210 SgG~kqRv~ia~al~~~ar~Li~d~~~lllDE----~~~~~l~~l~~~----~i~vtHd~~~~~~---rv--~--griv~ 274 (313)
--|+-|+|.||+|++.++|+||.|+++.-+|+ .++..+..+... .++++||+..+.+ ++ + |+-++
T Consensus 160 TeGE~QKVMIA~A~AnqPrLLIADEPTN~~e~~Tq~QifRLLs~mNQn~~TtILL~s~Dl~~is~W~d~i~VlYCGQ~~E 239 (330)
T COG4170 160 TEGECQKVMIAIALANQPRLLIADEPTNSMEPTTQAQIFRLLSRLNQNSNTTILLISHDLQMISQWADKINVLYCGQTVE 239 (330)
T ss_pred ccCcceeeeeehhhccCCceEeccCCCcccCccHHHHHHHHHHHhhccCCceEEEEcccHHHHHHHhhheEEEEeccccc
Confidence 99999999999999999999999999999998 555666555432 3599999999988 32 2 99999
Q ss_pred cCCchHHHH
Q 021362 275 TGKPPDVAK 283 (313)
Q Consensus 275 ~G~~~ev~~ 283 (313)
.++.++++.
T Consensus 240 Sa~~e~l~~ 248 (330)
T COG4170 240 SAPSEELVT 248 (330)
T ss_pred ccchhHHhc
Confidence 999888865
|
|
| >cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains | Back alignment and domain information |
|---|
Probab=99.84 E-value=4e-21 Score=173.94 Aligned_cols=176 Identities=9% Similarity=0.063 Sum_probs=122.0
Q ss_pred EEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCC-CceeecCCC-C--------
Q 021362 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQ-KASSFDSQV-K-------- 147 (313)
Q Consensus 78 l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~-~G~i~~~g~-~-------- 147 (313)
|.++|. +.|.... ++. .+. ..+++|+||||||||||+++|++++. +. .|++.+.+. +
T Consensus 6 ~~~~~f-~~~~~~~----~~~----~~~-~~~~~IvG~NGsGKStll~Ai~~ll~---~~~~~~~r~~~~~~li~~~~~~ 72 (251)
T cd03273 6 IILDGF-KSYATRT----VIS----GFD-PQFNAITGLNGSGKSNILDAICFVLG---ITNLSTVRASNLQDLIYKRGQA 72 (251)
T ss_pred EEEeCc-cccCcCE----eec----cCC-CCeEEEECCCCCCHHHHHHHHHHHhc---ccccccccccCHHHHhhcCCCC
Confidence 666776 6665433 222 222 56999999999999999999999997 66 356766554 1
Q ss_pred --CCCeEEEEecCCCC-------CCcccCCcccChHHHHHhcC-C-CCCccHHHHHHHHHHhhcCC--------------
Q 021362 148 --PPDVATVLPMDGFH-------LYLSQLDAMEDPKEAHARRG-A-PWTFNPLLLLNCLKNLRNQG-------------- 202 (313)
Q Consensus 148 --~~~~i~~v~qd~~~-------~~~~~ltv~e~~~~~~~~~~-~-~~~~~~~~~~~~l~~l~~~~-------------- 202 (313)
....+++++|++.. ...+.+++.+++.+...... . ......+++.++|+.++...
T Consensus 73 ~~~~~~v~~~fq~~~~~~~~~~~~~~~~ltV~r~I~~~~~~~~~in~~~~~~~~v~~~L~~vgL~~~~~~~~i~Qg~v~~ 152 (251)
T cd03273 73 GITKASVTIVFDNSDKSQSPIGFENYPEITVTRQIVLGGTNKYLINGHRAQQQRVQDLFQSVQLNVNNPHFLIMQGRITK 152 (251)
T ss_pred CCcEEEEEEEEEcCCcccCcccccCCceEEEEEEEEcCCceEEEECCEEeeHHHHHHHHHHcCCCCCCceEEEeehHHHH
Confidence 12268899998521 11235788888765432111 1 12234567888888888531
Q ss_pred --------CccCCCCCCcCCCcchhhhhhc----cCceEEEEcCCccccCh----hhHHHHHhhccc--eEEEEcChHHH
Q 021362 203 --------SVYAPSFDHGVGDPVEDDILVG----LQHKVVIVDGNYLFLDG----GVWKDVSSMFDE--KWFIEVDLDTA 264 (313)
Q Consensus 203 --------~~~~~~LSgG~kqRv~ia~al~----~~ar~Li~d~~~lllDE----~~~~~l~~l~~~--~i~vtHd~~~~ 264 (313)
+.++.+||+||+||+++|++++ .+++++++|+|+..||. .+++.|+++.+. .|++||+.+..
T Consensus 153 ~~~~~~~~~~~~~~lS~G~~qr~~la~al~~~~~~~~~illlDEPt~~ld~~~~~~~~~~l~~~~~g~~ii~iSH~~~~~ 232 (251)
T cd03273 153 VLNMGGVWKESLTELSGGQRSLVALSLILALLLFKPAPMYILDEVDAALDLSHTQNIGRMIKTHFKGSQFIVVSLKEGMF 232 (251)
T ss_pred HHHhHHhhcccccccCHHHHHHHHHHHHHHHhhccCCCEEEEeCCCcCCCHHHHHHHHHHHHHHcCCCEEEEEECCHHHH
Confidence 2456799999999999999987 57899999999999998 556666665443 47999996555
Q ss_pred HH
Q 021362 265 MQ 266 (313)
Q Consensus 265 ~~ 266 (313)
..
T Consensus 233 ~~ 234 (251)
T cd03273 233 NN 234 (251)
T ss_pred Hh
Confidence 43
|
Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo |
| >cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion | Back alignment and domain information |
|---|
Probab=99.83 E-value=3.6e-21 Score=174.68 Aligned_cols=174 Identities=14% Similarity=0.102 Sum_probs=114.4
Q ss_pred cccccccccCCCcEEEEECCCCCcHHHHHHHHH-----HHhcc--cCCCCce-----------eecCCCCCCC----e--
Q 021362 96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVV-----RRINK--IWPQKAS-----------SFDSQVKPPD----V-- 151 (313)
Q Consensus 96 ~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~-----gl~~~--~~p~~G~-----------i~~~g~~~~~----~-- 151 (313)
.|+|++++|+.|.+++|.|+||||||||++.+. ..+.. ..|..++ |.++..+..+ .
T Consensus 10 nl~~v~~~ip~g~~~~vtGvSGsGKStL~~~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~vdq~pi~~~~rs~~~ 89 (261)
T cd03271 10 NLKNIDVDIPLGVLTCVTGVSGSGKSSLINDTLYPALARRLHLKKEQPGNHDRIEGLEHIDKVIVIDQSPIGRTPRSNPA 89 (261)
T ss_pred cCCCceeeccCCcEEEEECCCCCchHHHHHHHHHHHHHHHhcccccCCCcccccccccccCceEEecCCcCCCCCCCcHH
Confidence 799999999999999999999999999998663 11110 0022222 2233222110 0
Q ss_pred ----------------------------EEEEecCCCCCCcccCCcccChHHHHHhcCCCCCccHHHHHHHHHHhhcC--
Q 021362 152 ----------------------------ATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ-- 201 (313)
Q Consensus 152 ----------------------------i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~-- 201 (313)
+.|..++...+ ..+|+.|++.+..... ...+..++|+.++..
T Consensus 90 ty~~~~~~ir~~fC~~C~G~r~~~~~l~~~~~g~~i~~v--~~ltv~e~~~~~~~~~------~~~~~~~~L~~vgL~~l 161 (261)
T cd03271 90 TYTGVFDEIRELFCEVCKGKRYNRETLEVRYKGKSIADV--LDMTVEEALEFFENIP------KIARKLQTLCDVGLGYI 161 (261)
T ss_pred HHHHHHHHHHHhcCccccccccCHHHHhcCcCCCCHHHH--hcCCHHHHHHHHHhhh------hHHHHHHHHHHcCCchh
Confidence 11111111111 2366666666654321 134566778888743
Q ss_pred -CCccCCCCCCcCCCcchhhhhhccC---ceEEEEcCCccccCh----hhHHHHHhhccc---eEEEEcChHHHHH--HH
Q 021362 202 -GSVYAPSFDHGVGDPVEDDILVGLQ---HKVVIVDGNYLFLDG----GVWKDVSSMFDE---KWFIEVDLDTAMQ--RV 268 (313)
Q Consensus 202 -~~~~~~~LSgG~kqRv~ia~al~~~---ar~Li~d~~~lllDE----~~~~~l~~l~~~---~i~vtHd~~~~~~--rv 268 (313)
.++.+.+|||||+||+++|++++.+ ++++++|+|+..||. .+++.|.++.+. .|++|||++++.. ++
T Consensus 162 ~l~~~~~~LSgGe~QRl~LAraL~~~~~~p~lllLDEPtsgLD~~~~~~l~~~L~~l~~~g~tvIiitH~~~~i~~aD~i 241 (261)
T cd03271 162 KLGQPATTLSGGEAQRIKLAKELSKRSTGKTLYILDEPTTGLHFHDVKKLLEVLQRLVDKGNTVVVIEHNLDVIKCADWI 241 (261)
T ss_pred hhcCccccCCHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhCCEE
Confidence 4667889999999999999999986 699999999999999 455555555433 4799999998865 33
Q ss_pred h----------hcccccCC
Q 021362 269 L----------KRHISTGK 277 (313)
Q Consensus 269 ~----------griv~~G~ 277 (313)
+ |++++.|+
T Consensus 242 i~Lgp~~g~~~G~iv~~Gt 260 (261)
T cd03271 242 IDLGPEGGDGGGQVVASGT 260 (261)
T ss_pred EEecCCcCCCCCEEEEeCC
Confidence 3 56666665
|
Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases. |
| >cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.7e-20 Score=168.79 Aligned_cols=174 Identities=10% Similarity=0.035 Sum_probs=101.7
Q ss_pred EEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcc-------------cCCCCc-----
Q 021362 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINK-------------IWPQKA----- 139 (313)
Q Consensus 78 l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~-------------~~p~~G----- 139 (313)
|+++|. |+|++.. ++++++ |++++|+||||||||||+++|++++.. ..+.+|
T Consensus 4 i~~~nf-ksy~~~~----~~~~~~-----~~~~~i~GpNGsGKStll~ai~~~l~~~~~~~~~~~~~~li~~~~~~~~~~ 73 (243)
T cd03272 4 VIIQGF-KSYKDQT----VIEPFS-----PKHNVVVGRNGSGKSNFFAAIRFVLSDEYTHLREEQRQALLHEGSGPSVMS 73 (243)
T ss_pred EEEeCc-cCcccCc----ccccCC-----CCcEEEECCCCCCHHHHHHHHHHHHcCchhhhhhhhHHHhEeCCCCCCCce
Confidence 556664 4676655 777776 789999999999999999999965420 004444
Q ss_pred ---eeecCCCC-----------CCCeEEEEecCCCCCCcccCCcccChHHHHHhcCCCCCc-----cHHHHHHHHHHhhc
Q 021362 140 ---SSFDSQVK-----------PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTF-----NPLLLLNCLKNLRN 200 (313)
Q Consensus 140 ---~i~~~g~~-----------~~~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~~~~-----~~~~~~~~l~~l~~ 200 (313)
++.+++.+ ..+.++++++.. .++....+..+ +...+...+..... ...++.+++.. ..
T Consensus 74 ~~v~i~~~~~~~~~~~~~~~~~i~r~ig~~~~~~-~l~~~~~t~~e-i~~~l~~~gl~~~~~~~~~~qg~i~~l~~l-~~ 150 (243)
T cd03272 74 AYVEIIFDNSDNRFPIDKEEVRLRRTIGLKKDEY-FLDKKNVTKND-VMNLLESAGFSRSNPYYIVPQGKINSLTNM-KQ 150 (243)
T ss_pred EEEEEEEEcCCCccCCCCCEEEEEEEEECCCCEE-EECCeEcCHHH-HHHHHHHcCCCCCCCcEEEEcCchHHhhhc-cc
Confidence 33333311 011244444432 12221233333 22232333332211 01122222221 12
Q ss_pred CCCccCCCCCCcCCCcchhhhhhc----cCceEEEEcCCccccCh----hhHHHHHhhccc-eE-EEEcChHHHH
Q 021362 201 QGSVYAPSFDHGVGDPVEDDILVG----LQHKVVIVDGNYLFLDG----GVWKDVSSMFDE-KW-FIEVDLDTAM 265 (313)
Q Consensus 201 ~~~~~~~~LSgG~kqRv~ia~al~----~~ar~Li~d~~~lllDE----~~~~~l~~l~~~-~i-~vtHd~~~~~ 265 (313)
..+.++.+|||||+||++||++++ .++.++++|+|+..+|. .+++.|+++.+. .+ +++|+. ++.
T Consensus 151 ~~~~~~~~lS~G~~~r~~la~~l~~~~~~~~~illlDEp~~~ld~~~~~~~~~~l~~~~~~~~ii~~~h~~-~~~ 224 (243)
T cd03272 151 DEQQEMQQLSGGQKSLVALALIFAIQKCDPAPFYLFDEIDAALDAQYRTAVANMIKELSDGAQFITTTFRP-ELL 224 (243)
T ss_pred cccccccccCHHHHHHHHHHHHHHHhccCCCCEEEEECCccCCCHHHHHHHHHHHHHHhCCCEEEEEecCH-HHH
Confidence 234567799999999999999996 35899999999999999 556666666432 34 555664 444
|
Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo |
| >cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway | Back alignment and domain information |
|---|
Probab=99.81 E-value=2.2e-19 Score=159.54 Aligned_cols=187 Identities=22% Similarity=0.294 Sum_probs=138.8
Q ss_pred EEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCCCCeEEEEecCCCCCCcccCCcccChHHHHHhcCCCCCccH
Q 021362 109 IVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNP 188 (313)
Q Consensus 109 iv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~~~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~~~~~~ 188 (313)
++||.||||||||||++.|.+++. +..+ ...+.++++|+|+.... ...+.- .....+.|.+.+.
T Consensus 1 IigI~G~sGSGKTTla~~L~~~l~---~~~~---------~~~v~vi~~D~f~~~~~--~~~~~~--~~~~~g~p~~~d~ 64 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQALLS---RWPD---------HPNVELITTDGFLYPNK--ELIERG--LMDRKGFPESYDM 64 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHHHHh---hcCC---------CCcEEEEecCcccCcHH--HHHHhh--hhhcCCCcccCCH
Confidence 589999999999999999999996 4211 12367799998865431 111111 1123567788888
Q ss_pred HHHHHHHHHhhc-CCCccCCCCCCcCCCcchhhhhhccCceEEEEcCCccccCh-hhHHHHHhhccceEEEEcChHHHHH
Q 021362 189 LLLLNCLKNLRN-QGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDG-GVWKDVSSMFDEKWFIEVDLDTAMQ 266 (313)
Q Consensus 189 ~~~~~~l~~l~~-~~~~~~~~LSgG~kqRv~ia~al~~~ar~Li~d~~~lllDE-~~~~~l~~l~~~~i~vtHd~~~~~~ 266 (313)
+.+.+.|+.+.. .....+|.||.....|+.-......+++++|+|+.+++.|+ .-|..+.++++..|||+-|.+.+..
T Consensus 65 ~~l~~~L~~l~~g~~~v~~P~yd~~~~~~~~~~~~~~~~~~vvIvEG~~~l~~~~~~~~~l~~~~D~~ifvd~~~~~~~~ 144 (220)
T cd02025 65 EALLKFLKDIKSGKKNVKIPVYSHLTYDVIPGEKQTVDQPDILIIEGLNVLQTGQNPRLFVSDFFDFSIYVDADEDDIEK 144 (220)
T ss_pred HHHHHHHHHHHCCCCcEEccccceeccccCCCCceecCCCCEEEECCchhcCCcccchhhHHHhCCeEEEEECCHHHHHH
Confidence 888899999987 46778999999998888765544667899999999999985 5677899999999999999998765
Q ss_pred HHh----------hcccc------cCCchH----HHHHHHHhcCCchh-HHhhhcccCccEEeecC
Q 021362 267 RVL----------KRHIS------TGKPPD----VAKWRIEYNDRPNA-ELIMKSKKNADLVIKSI 311 (313)
Q Consensus 267 rv~----------griv~------~G~~~e----v~~~~~~~~~~~~~-~~i~~~~~~ad~ii~~~ 311 (313)
|++ ||... .|-+.+ .+...|+.+++||. +||.|++..||+||+..
T Consensus 145 rl~~R~~r~~~~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~~~AD~ii~~~ 210 (220)
T cd02025 145 WYIKRFLKLRETAFSDPDSYFHRYAKMSEEEAIAFAREVWKNINLKNLRENILPTRNRADLILEKG 210 (220)
T ss_pred HHHHHHHHHHHHHHhCchhhhhcccCCCHHHHHHHHHHHHHHcCHHHHhhhccCCccceEEEEEeC
Confidence 443 22221 343322 23445778999999 59999999999999753
|
The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis. |
| >COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.81 E-value=3.3e-20 Score=174.81 Aligned_cols=170 Identities=15% Similarity=0.115 Sum_probs=124.1
Q ss_pred EEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCCCCeEEEEe
Q 021362 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLP 156 (313)
Q Consensus 77 ~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~~~~i~~v~ 156 (313)
+++-.++.|.||+.. |+--.=+|..||++|++||||-|||||.++|+|.++ |++|+ . ..-+++|-|
T Consensus 342 lv~y~~~~k~~g~F~-----L~V~~G~i~~gEvigilGpNgiGKTTFvk~LAG~ik---Pdeg~-~-----~~~~vSyKP 407 (591)
T COG1245 342 LVEYPDLKKTYGDFK-----LEVEEGEIYDGEVIGILGPNGIGKTTFVKLLAGVIK---PDEGS-E-----EDLKVSYKP 407 (591)
T ss_pred eeecchheeecCceE-----EEecCCeeecceEEEEECCCCcchHHHHHHHhcccc---CCCCC-C-----ccceEeecc
Confidence 688889999998754 444455788999999999999999999999999999 99998 1 223477777
Q ss_pred cCCCCCCcccCCcccChHHHHHhcCCCCCccHHHHHHHHHHhh--cCCCccCCCCCCcCCCcchhhhhhccCceEEEEcC
Q 021362 157 MDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLR--NQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDG 234 (313)
Q Consensus 157 qd~~~~~~~~ltv~e~~~~~~~~~~~~~~~~~~~~~~~l~~l~--~~~~~~~~~LSgG~kqRv~ia~al~~~ar~Li~d~ 234 (313)
|- ..+....||.+.+.-..... ... ...-.++++.|. ...++++..|||||.|||+||.+|..+|++.++|+
T Consensus 408 Qy--I~~~~~gtV~~~l~~~~~~~-~~~---s~~~~ei~~pl~l~~i~e~~v~~LSGGELQRvaIaa~L~reADlYllDE 481 (591)
T COG1245 408 QY--ISPDYDGTVEDLLRSAIRSA-FGS---SYFKTEIVKPLNLEDLLERPVDELSGGELQRVAIAAALSREADLYLLDE 481 (591)
T ss_pred ee--ecCCCCCcHHHHHHHhhhhh-ccc---chhHHhhcCccchHHHHhcccccCCchhHHHHHHHHHhccccCEEEecC
Confidence 74 22333468877654432211 111 111234455544 34577889999999999999999999999999999
Q ss_pred CccccCh----hhHHHHHhhccc----eEEEEcChHHHHH
Q 021362 235 NYLFLDG----GVWKDVSSMFDE----KWFIEVDLDTAMQ 266 (313)
Q Consensus 235 ~~lllDE----~~~~~l~~l~~~----~i~vtHd~~~~~~ 266 (313)
|-..||- .+-+.|+.+... .++|+||+-.+..
T Consensus 482 PSA~LDvEqR~~vakvIRR~~e~~~kta~vVdHDi~~~dy 521 (591)
T COG1245 482 PSAYLDVEQRIIVAKVIRRFIENNEKTALVVDHDIYMIDY 521 (591)
T ss_pred chhhccHHHHHHHHHHHHHHHhhcCceEEEEecceehhhh
Confidence 9999998 334444444432 4799999987765
|
|
| >KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.4e-19 Score=188.37 Aligned_cols=204 Identities=12% Similarity=0.023 Sum_probs=155.1
Q ss_pred EEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCCC-----Ce
Q 021362 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPP-----DV 151 (313)
Q Consensus 77 ~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~~-----~~ 151 (313)
+.-..|+.+....+.++..+|+||+=-+.+|...+|+|+|||||||||++|+|.... --.+|+|.++|.+.. +.
T Consensus 787 V~~w~dl~~~~~~qG~~~qLL~~V~G~~kPG~LTALMG~SGAGKTTLLdvLA~R~t~-G~I~Gdi~i~G~p~~q~tF~R~ 865 (1391)
T KOG0065|consen 787 VFYWVDLPYEMPIQGGTRQLLNNVSGAFKPGVLTALMGESGAGKTTLLDVLAGRKTG-GYIEGDILISGFPKDQETFARV 865 (1391)
T ss_pred eEEEEeCCccccccccceEhhhcCceEecCCceeehhcCCCCchHHHHHHHhcCccc-ceEEeEEEECCeeCchhhhccc
Confidence 455566655553222344599999999999999999999999999999999997531 145789999997744 56
Q ss_pred EEEEecCCCCCCcccCCcccChHHHHHhcCC---CCCccHHHHHHHHHHhhcC--CCccCC----CCCCcCCCcchhhhh
Q 021362 152 ATVLPMDGFHLYLSQLDAMEDPKEAHARRGA---PWTFNPLLLLNCLKNLRNQ--GSVYAP----SFDHGVGDPVEDDIL 222 (313)
Q Consensus 152 i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~---~~~~~~~~~~~~l~~l~~~--~~~~~~----~LSgG~kqRv~ia~a 222 (313)
+|||.|++.|.+ .+||+|-+.+.+.++.. +..+..+.++++++.|++. .+.-++ -||..||+|+.|+.-
T Consensus 866 ~GYvqQ~DiH~~--~~TVrESL~fSA~LRlp~~v~~~ek~~yVe~Vi~lleL~~~~daiVG~~G~GLs~eQRKrLTIgVE 943 (1391)
T KOG0065|consen 866 SGYVEQQDIHSP--ELTVRESLRFSAALRLPKEVSDEEKYEYVEEVIELLELKEYADALVGLPGSGLSTEQRKRLTIGVE 943 (1391)
T ss_pred cceeecccccCc--ccchHHHHHHHHHHcCCCcCCHHHHHHHHHHHHHHhCchhhhhhhccCCCCCCCHHHhceeeEEEE
Confidence 999999998885 49999999998876632 2223335578888888844 455444 499999999999999
Q ss_pred hccCc-eEEEEcCCccccCh----hhHHHHHhhccce--E-EEEcChHHHHH----HHh-----hcccccCCchHHHH
Q 021362 223 VGLQH-KVVIVDGNYLFLDG----GVWKDVSSMFDEK--W-FIEVDLDTAMQ----RVL-----KRHISTGKPPDVAK 283 (313)
Q Consensus 223 l~~~a-r~Li~d~~~lllDE----~~~~~l~~l~~~~--i-~vtHd~~~~~~----rv~-----griv~~G~~~ev~~ 283 (313)
|+.+| -+|.+|+|+.+||. .+.+.++++.+.+ | ..-|.+....- |++ |+.|..|+..+-..
T Consensus 944 LvA~P~~ilFLDEPTSGLDsqaA~~i~~~lrkla~tGqtIlCTIHQPS~~ife~FD~LLLLkrGGqtVY~G~lG~~s~ 1021 (1391)
T KOG0065|consen 944 LVANPSSILFLDEPTSGLDSQAAAIVMRFLRKLADTGQTILCTIHQPSIDIFEAFDELLLLKRGGQTVYFGPLGENSS 1021 (1391)
T ss_pred EecCCceeEEecCCCCCccHHHHHHHHHHHHHHHhcCCeEEEEecCCcHHHHHHHhHHHHHhcCCeEEEecCcccccH
Confidence 98888 88889999999999 5677777777654 5 44487665433 655 89999888766443
|
|
| >COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.80 E-value=1e-19 Score=176.01 Aligned_cols=190 Identities=18% Similarity=0.181 Sum_probs=149.6
Q ss_pred ccEEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCCC-----
Q 021362 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPP----- 149 (313)
Q Consensus 75 m~~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~~----- 149 (313)
-+++++++++..- .++|+||++.+|||+||.|-=|||+|-|+++|.|..+ +.+|+|.++|++..
T Consensus 261 ~~~l~v~~l~~~~--------~~~dvSf~vr~GEIlGiaGLvGaGRTEl~~~lfG~~~---~~~G~i~l~G~~v~~~sp~ 329 (500)
T COG1129 261 EPVLEVRNLSGGG--------KVRDVSFTVRAGEILGIAGLVGAGRTELARALFGARP---ASSGEILLDGKPVRIRSPR 329 (500)
T ss_pred CcEEEEecCCCCC--------ceeCceeEEeCCcEEEEeccccCCHHHHHHHHhCCCc---CCCceEEECCEEccCCCHH
Confidence 4578999887542 4789999999999999999999999999999999888 89999999998632
Q ss_pred ----CeEEEEecCCCC-CCcccCCcccChHHHHH-hcC----CCCCccHHHHHHHHHHhh---cCCCccCCCCCCcCCCc
Q 021362 150 ----DVATVLPMDGFH-LYLSQLDAMEDPKEAHA-RRG----APWTFNPLLLLNCLKNLR---NQGSVYAPSFDHGVGDP 216 (313)
Q Consensus 150 ----~~i~~v~qd~~~-~~~~~ltv~e~~~~~~~-~~~----~~~~~~~~~~~~~l~~l~---~~~~~~~~~LSgG~kqR 216 (313)
.-++||+.|.-. -....+++.+|+.+... .+. .......+.+.++.+.++ ...+..+..||||.||+
T Consensus 330 ~Ai~~Gi~~v~EDRk~~Gl~l~~sI~~Ni~l~~l~~~~~~~~i~~~~e~~~~~~~~~~l~Ik~~s~~~~v~~LSGGNQQK 409 (500)
T COG1129 330 DAIKAGIAYVPEDRKSEGLVLDMSIAENITLASLRRFSRRGLIDRRKERALAERYIRRLRIKTPSPEQPIGTLSGGNQQK 409 (500)
T ss_pred HHHHcCCEeCCcccccCcCcCCCcHHHheehHhhhhhccccccChHHHHHHHHHHHHhcCcccCCccchhhcCCchhhhh
Confidence 238999988421 01124799999988721 111 122223344566667776 33456788999999999
Q ss_pred chhhhhhccCceEEEEcCCccccCh----hhHHHHHhhccce---EEEEcChHHHHH---HHh----hccccc
Q 021362 217 VEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFDEK---WFIEVDLDTAMQ---RVL----KRHIST 275 (313)
Q Consensus 217 v~ia~al~~~ar~Li~d~~~lllDE----~~~~~l~~l~~~~---i~vtHd~~~~~~---rv~----griv~~ 275 (313)
|.||++++.++++||+|+|+-..|- ++.+.|+++.+++ +++|-++.++.. ||+ ||++..
T Consensus 410 VvlarwL~~~p~vLilDEPTRGIDVGAK~eIy~li~~lA~~G~ail~iSSElpEll~~~DRIlVm~~Gri~~e 482 (500)
T COG1129 410 VVLARWLATDPKVLILDEPTRGIDVGAKAEIYRLIRELAAEGKAILMISSELPELLGLSDRILVMREGRIVGE 482 (500)
T ss_pred HHHHHHHhcCCCEEEECCCCcCcccchHHHHHHHHHHHHHCCCEEEEEeCChHHHHhhCCEEEEEECCEEEEE
Confidence 9999999999999999999999998 7788888887774 699999999997 777 888864
|
|
| >cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends | Back alignment and domain information |
|---|
Probab=99.80 E-value=5e-20 Score=162.83 Aligned_cols=165 Identities=12% Similarity=0.026 Sum_probs=107.5
Q ss_pred EEEEccceEEccccccccccccccccccC-CCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecC-------CCCC
Q 021362 77 VVEARCMDEVYDALAQRLLPTSALASNVN-VKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDS-------QVKP 148 (313)
Q Consensus 77 ~l~~~~l~~~y~~~~~~~~~L~~vsl~i~-~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~-------g~~~ 148 (313)
-|+++|+. .|.+. .+++|+.. +|++++|+||||||||||+++|++.+.. +..+....+ ....
T Consensus 5 ~i~l~nf~-~y~~~-------~~i~~~~~~~~~~~~i~G~NGsGKSTll~~i~~~l~g--~~~~~~~~~~~~~~~~~~~~ 74 (213)
T cd03279 5 KLELKNFG-PFREE-------QVIDFTGLDNNGLFLICGPTGAGKSTILDAITYALYG--KTPRYGRQENLRSVFAPGED 74 (213)
T ss_pred EEEEECCc-CcCCc-------eEEeCCCCCccCEEEEECCCCCCHHHHHHHheeeEec--CccccccchhHHHHhcCCCc
Confidence 48889988 66543 34566654 5999999999999999999999964421 333333321 1123
Q ss_pred CCeEEEEecCCCCCCcccCCcccChHHHHHhcCCCCCccHHHHHH--HHHHh--hcCCCccCCCCCCcCCCcchhhhhhc
Q 021362 149 PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLN--CLKNL--RNQGSVYAPSFDHGVGDPVEDDILVG 224 (313)
Q Consensus 149 ~~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~~~~~~~~~~~--~l~~l--~~~~~~~~~~LSgG~kqRv~ia~al~ 224 (313)
...+++++|+.... .++.... +.. .+.+.+ .++.. ....+.++..||+||+||+++|++++
T Consensus 75 ~~~v~~~f~~~~~~----~~~~r~~-------gl~----~~~~~~~~~l~~g~l~~~l~~~~~~lS~G~~~r~~la~al~ 139 (213)
T cd03279 75 TAEVSFTFQLGGKK----YRVERSR-------GLD----YDQFTRIVLLPQGEFDRFLARPVSTLSGGETFLASLSLALA 139 (213)
T ss_pred cEEEEEEEEECCeE----EEEEEec-------CCC----HHHHHHhhhhhhcchHHHhcCCccccCHHHHHHHHHHHHHH
Confidence 34588888885322 1232321 222 122211 12222 23346677899999999999999997
Q ss_pred c----------CceEEEEcCCccccCh----hhHHHHHhhcc---ceEEEEcChHHHHH
Q 021362 225 L----------QHKVVIVDGNYLFLDG----GVWKDVSSMFD---EKWFIEVDLDTAMQ 266 (313)
Q Consensus 225 ~----------~ar~Li~d~~~lllDE----~~~~~l~~l~~---~~i~vtHd~~~~~~ 266 (313)
. +++++++|+|+..+|. .+.+.+.++.+ ..+++|||++++..
T Consensus 140 ~~p~~~~~~~~~~~~lllDEp~~~lD~~~~~~~~~~l~~~~~~~~tii~itH~~~~~~~ 198 (213)
T cd03279 140 LSEVLQNRGGARLEALFIDEGFGTLDPEALEAVATALELIRTENRMVGVISHVEELKER 198 (213)
T ss_pred hHHHhhhccCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEECchHHHHh
Confidence 4 4579999999999998 44555555543 24799999998764
|
They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini. |
| >COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.2e-19 Score=178.81 Aligned_cols=175 Identities=14% Similarity=-0.018 Sum_probs=133.3
Q ss_pred cEEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCCCCeEEEE
Q 021362 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVL 155 (313)
Q Consensus 76 ~~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~~~~i~~v 155 (313)
..|.++|++..-++.. ..|++.+|+|++|+-+-|.||||||||||+|+|+|+-+ --+|+|..- ....+-|+
T Consensus 391 ~~i~~~nl~l~~p~~~---~ll~~l~~~v~~G~~llI~G~SG~GKTsLlRaiaGLWP---~g~G~I~~P---~~~~~lfl 461 (604)
T COG4178 391 HGITLENLSLRTPDGQ---TLLSELNFEVRPGERLLITGESGAGKTSLLRALAGLWP---WGSGRISMP---ADSALLFL 461 (604)
T ss_pred ceeEEeeeeEECCCCC---eeeccceeeeCCCCEEEEECCCCCCHHHHHHHHhccCc---cCCCceecC---CCCceEEe
Confidence 4699999999987643 38999999999999999999999999999999999987 567887764 23447899
Q ss_pred ecCCCCCCcccCCcccChHHHHHhcCCCCCccHHHHHHHHHHhhcC-------CCccCC-CCCCcCCCcchhhhhhccCc
Q 021362 156 PMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ-------GSVYAP-SFDHGVGDPVEDDILVGLQH 227 (313)
Q Consensus 156 ~qd~~~~~~~~ltv~e~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~-------~~~~~~-~LSgG~kqRv~ia~al~~~a 227 (313)
||.+|... -|.+|-+.++... .....+.+.++|..++++ ...... .||+|||||+++||.+.++|
T Consensus 462 pQ~PY~p~---GtLre~l~YP~~~----~~~~d~~l~~vL~~vgL~~L~~rl~~~~~W~~vLS~GEqQRlafARilL~kP 534 (604)
T COG4178 462 PQRPYLPQ---GTLREALCYPNAA----PDFSDAELVAVLHKVGLGDLAERLDEEDRWDRVLSGGEQQRLAFARLLLHKP 534 (604)
T ss_pred cCCCCCCC---ccHHHHHhCCCCC----CCCChHHHHHHHHHcCcHHHHHHHhccCcHhhhcChhHHHHHHHHHHHHcCC
Confidence 99976432 3777777665322 125567778888877732 222333 99999999999999999999
Q ss_pred eEEEEcCCccccChhhHHHHHhhccc------eEEEEcChHHHHH
Q 021362 228 KVVIVDGNYLFLDGGVWKDVSSMFDE------KWFIEVDLDTAMQ 266 (313)
Q Consensus 228 r~Li~d~~~lllDE~~~~~l~~l~~~------~i~vtHd~~~~~~ 266 (313)
+.+++|+.+.-|||+....+.++.++ .|.|.|.......
T Consensus 535 ~~v~LDEATsALDe~~e~~l~q~l~~~lp~~tvISV~Hr~tl~~~ 579 (604)
T COG4178 535 KWVFLDEATSALDEETEDRLYQLLKEELPDATVISVGHRPTLWNF 579 (604)
T ss_pred CEEEEecchhccChHHHHHHHHHHHhhCCCCEEEEeccchhhHHH
Confidence 99999999999999554444444433 3577787665543
|
|
| >cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains | Back alignment and domain information |
|---|
Probab=99.80 E-value=8.1e-21 Score=167.84 Aligned_cols=166 Identities=12% Similarity=0.067 Sum_probs=108.6
Q ss_pred EEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCCCCeEEEEec
Q 021362 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPM 157 (313)
Q Consensus 78 l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~~~~i~~v~q 157 (313)
|+++|.. .|++.. ++++++| +++||+||||||||||+++|...+. .+.... ....++++++
T Consensus 6 l~l~nfk-~~~~~~----~l~~~~~-----~i~~ivGpNGaGKSTll~~i~~~~G---~~~~~~------~~~~i~~~~~ 66 (212)
T cd03274 6 LVLENFK-SYAGEQ----VIGPFHK-----SFSAIVGPNGSGKSNVIDSMLFVFG---FRASKM------RQKKLSDLIH 66 (212)
T ss_pred EEEECcc-cCCCCe----eeccCCC-----CeEEEECCCCCCHHHHHHHHHHHhc---cCHHHh------hhhhHHHHhc
Confidence 7788876 888777 8998887 8999999999999999999985542 110000 1134666776
Q ss_pred CCCCCCcccCCcccChHHHHHh--------cCCCCCccHH--HHHHHHHHhh--cCCCccCCCCCCcCCCcchhhhhhcc
Q 021362 158 DGFHLYLSQLDAMEDPKEAHAR--------RGAPWTFNPL--LLLNCLKNLR--NQGSVYAPSFDHGVGDPVEDDILVGL 225 (313)
Q Consensus 158 d~~~~~~~~ltv~e~~~~~~~~--------~~~~~~~~~~--~~~~~l~~l~--~~~~~~~~~LSgG~kqRv~ia~al~~ 225 (313)
.....+ .+++.++..+.... ++........ ...++++.++ ...+.++..||+||+||+++|++++.
T Consensus 67 ~~~~~~--~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~v~~~~~~~~~~L~~~~~~~~~~lS~G~~~r~~la~al~~ 144 (212)
T cd03274 67 NSAGHP--NLDSCSVEVHFQEIIDKPLLKSKGIDLDHNRFLILQGEVEQIAQMPKKSWKNISNLSGGEKTLSSLALVFAL 144 (212)
T ss_pred CCCCCC--CCceEEEEEEEEeCCCHHHHHHCCcCCCCCceEEcCCcEEEeeccccccccchhhcCHHHHHHHHHHHHHHh
Confidence 643322 36666665543221 2222111100 0122233333 33455677999999999999999863
Q ss_pred ----CceEEEEcCCccccCh----hhHHHHHhhccc--eEEEEcChHHH
Q 021362 226 ----QHKVVIVDGNYLFLDG----GVWKDVSSMFDE--KWFIEVDLDTA 264 (313)
Q Consensus 226 ----~ar~Li~d~~~lllDE----~~~~~l~~l~~~--~i~vtHd~~~~ 264 (313)
+++++++|+|+..+|. .+++.++++.+. .|++||+.+..
T Consensus 145 ~~~~~p~ililDEPt~gLD~~~~~~l~~~l~~~~~~~~~iivs~~~~~~ 193 (212)
T cd03274 145 HHYKPTPLYVMDEIDAALDFRNVSIVANYIKERTKNAQFIVISLRNNMF 193 (212)
T ss_pred cccCCCCEEEEcCCCcCCCHHHHHHHHHHHHHHcCCCEEEEEECcHHHH
Confidence 5799999999999998 556666665433 47999996543
|
Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo |
| >KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.4e-19 Score=169.82 Aligned_cols=175 Identities=16% Similarity=0.124 Sum_probs=135.9
Q ss_pred CccEEEEccceEEccc-cccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCCCCeE
Q 021362 74 EIPVVEARCMDEVYDA-LAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVA 152 (313)
Q Consensus 74 ~m~~l~~~~l~~~y~~-~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~~~~i 152 (313)
.-|+|-+.+|++.|.+ .. .+.+++|-|.--..++|+||||.||||||++|.|-+. |+.|+.+-+. +-+|
T Consensus 583 ~PPvLGlH~VtFgy~gqkp----LFkkldFGiDmdSRiaIVGPNGVGKSTlLkLL~Gkl~---P~~GE~RKnh---rL~i 652 (807)
T KOG0066|consen 583 NPPVLGLHDVTFGYPGQKP----LFKKLDFGIDMDSRIAIVGPNGVGKSTLLKLLIGKLD---PNDGELRKNH---RLRI 652 (807)
T ss_pred CCCeeecccccccCCCCCc----hhhcccccccccceeEEECCCCccHHHHHHHHhcCCC---CCcchhhccc---eeee
Confidence 3468999999999954 44 8899999999999999999999999999999999999 9999987552 3357
Q ss_pred EEEecCCCCCCcccCCcccChHHHH-HhcCCCCCccHHHHHHHHHHhhcC---CCccCCCCCCcCCCcchhhhhhccCce
Q 021362 153 TVLPMDGFHLYLSQLDAMEDPKEAH-ARRGAPWTFNPLLLLNCLKNLRNQ---GSVYAPSFDHGVGDPVEDDILVGLQHK 228 (313)
Q Consensus 153 ~~v~qd~~~~~~~~ltv~e~~~~~~-~~~~~~~~~~~~~~~~~l~~l~~~---~~~~~~~LSgG~kqRv~ia~al~~~ar 228 (313)
|++.|... ..++..+.....+ +.+..| .+.++..|..+|+. ....+..|||||+-||++|-..+..+.
T Consensus 653 G~FdQh~~----E~L~~Eetp~EyLqr~FNlp----yq~ARK~LG~fGL~sHAHTikikdLSGGQKaRValaeLal~~PD 724 (807)
T KOG0066|consen 653 GWFDQHAN----EALNGEETPVEYLQRKFNLP----YQEARKQLGTFGLASHAHTIKIKDLSGGQKARVALAELALGGPD 724 (807)
T ss_pred echhhhhH----HhhccccCHHHHHHHhcCCC----hHHHHHHhhhhhhhhccceEeeeecCCcchHHHHHHHHhcCCCC
Confidence 87766532 2466666554443 334444 45667778888743 345778999999999999988888899
Q ss_pred EEEEcCCccccChhh----HHHHHhhccceEEEEcChHHHHH
Q 021362 229 VVIVDGNYLFLDGGV----WKDVSSMFDEKWFIEVDLDTAMQ 266 (313)
Q Consensus 229 ~Li~d~~~lllDE~~----~~~l~~l~~~~i~vtHd~~~~~~ 266 (313)
+||+|+|+.-||-+. -+.|.++...+|+||||..++.+
T Consensus 725 vlILDEPTNNLDIESIDALaEAIney~GgVi~VsHDeRLi~e 766 (807)
T KOG0066|consen 725 VLILDEPTNNLDIESIDALAEAINEYNGGVIMVSHDERLIVE 766 (807)
T ss_pred EEEecCCCCCcchhhHHHHHHHHHhccCcEEEEecccceeee
Confidence 999999999999744 44445555557899999888766
|
|
| >TIGR00554 panK_bact pantothenate kinase, bacterial type | Back alignment and domain information |
|---|
Probab=99.77 E-value=2.7e-18 Score=157.81 Aligned_cols=191 Identities=20% Similarity=0.325 Sum_probs=141.0
Q ss_pred CCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCCCCeEEEEecCCCCCCcccCCcccChHHHHHhcCCCC
Q 021362 105 NVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPW 184 (313)
Q Consensus 105 ~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~~~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~~ 184 (313)
+...++||.||||||||||+++|.+++.+ ||++|. +.++.+|+|+.... ..+...+ ...++.|.
T Consensus 60 ~~p~IIGIaG~~GSGKSTlar~L~~ll~~-~~~~g~-----------V~vi~~D~f~~~~~---~l~~~g~-~~~~g~P~ 123 (290)
T TIGR00554 60 KIPYIISIAGSVAVGKSTTARILQALLSR-WPEHRK-----------VELITTDGFLHPNQ---VLKERNL-MKKKGFPE 123 (290)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHhh-cCCCCc-----------eEEEecccccccHH---HHHHcCC-ccccCCCh
Confidence 45689999999999999999999999962 344443 45678888765431 1111111 13457788
Q ss_pred CccHHHHHHHHHHhhcCCC-ccCCCCCCcCCCcchhhhhhccCceEEEEcCCccccCh------hhHHHHHhhccceEEE
Q 021362 185 TFNPLLLLNCLKNLRNQGS-VYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDG------GVWKDVSSMFDEKWFI 257 (313)
Q Consensus 185 ~~~~~~~~~~l~~l~~~~~-~~~~~LSgG~kqRv~ia~al~~~ar~Li~d~~~lllDE------~~~~~l~~l~~~~i~v 257 (313)
+.+.+.+.+.+..+..+.. ..+|.||.-...++.-......+++++|+|+.+++.++ ..|..+.++++..|||
T Consensus 124 s~D~~~l~~~L~~Lk~g~~~v~~P~Yd~~~~d~~~~~~~~v~~~dIiIvEGi~vL~~~~~~~~~~~~~~~~d~~D~~Iyv 203 (290)
T TIGR00554 124 SYDMHRLVKFLSDLKSGKPNVTAPVYSHLTYDVIPDGFKVVVQPDILILEGLNVLQSGMDYPHDPHHVFVSDFVDFSIYV 203 (290)
T ss_pred hccHHHHHHHHHHHHCCCCceecCccccccCCcCCCCeEEcCCCCEEEECCchHhCCchhcccccchHHHHHhCCEEEEE
Confidence 8888888888988887654 78899998888877654455578999999999988554 4588899999999999
Q ss_pred EcChHHHHHHHhhccc-----c-----------cCCch-H---HHHHHHHhcCCchhH-HhhhcccCccEEeecC
Q 021362 258 EVDLDTAMQRVLKRHI-----S-----------TGKPP-D---VAKWRIEYNDRPNAE-LIMKSKKNADLVIKSI 311 (313)
Q Consensus 258 tHd~~~~~~rv~griv-----~-----------~G~~~-e---v~~~~~~~~~~~~~~-~i~~~~~~ad~ii~~~ 311 (313)
+-|.+.+..|.+.|.. + .|-++ + .+.+.|.....||.. +|+|++..||+|++..
T Consensus 204 Da~~d~~~~w~i~R~~~l~~~~~~~~~s~~~~~~~~~~~ea~~~~~~~w~~~~~~nl~~~I~Ptr~rAdlIl~~~ 278 (290)
T TIGR00554 204 DAEEDLLQTWYINRFLKFREGAFTDPDSYFHNYAKLSKEEAIKTAMTIWKEINWLNLKQNILPTRERASLILTKG 278 (290)
T ss_pred ECCHHHHHHHHHHHHHHHHHhhhcCcchhhhhhccCCHHHHHHHHHHHHHHcchhhHHhhCCCCcccccEEEecC
Confidence 9999988875442211 0 02222 2 345668999999985 9999999999999854
|
Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model. |
| >PTZ00301 uridine kinase; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=7.9e-18 Score=148.29 Aligned_cols=184 Identities=23% Similarity=0.333 Sum_probs=138.6
Q ss_pred cEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCCCCeEEEEecCCCCCCcccCCcccChHHHHHhcCCCCCcc
Q 021362 108 HIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFN 187 (313)
Q Consensus 108 eiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~~~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~~~~~ 187 (313)
-+|||.|++|||||||.+.|...+. -..| ...+.++++|+|+.....+... ......++.|++++
T Consensus 4 ~iIgIaG~SgSGKTTla~~l~~~l~---~~~~---------~~~~~vi~~D~yy~~~~~~~~~---~~~~~~~d~p~a~D 68 (210)
T PTZ00301 4 TVIGISGASGSGKSSLSTNIVSELM---AHCG---------PVSIGVICEDFYYRDQSNIPES---ERAYTNYDHPKSLE 68 (210)
T ss_pred EEEEEECCCcCCHHHHHHHHHHHHH---hhcC---------CCeEEEeCCCCCccCcccCCHH---HhcCCCCCChhhhC
Confidence 5899999999999999999887663 1111 1235678999876554222211 11223567788899
Q ss_pred HHHHHHHHHHhhcCCCccCCCCCCcCCCcchhhhhhccCceEEEEcCCccccChhhHHHHHhhccceEEEEcChHHHHHH
Q 021362 188 PLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEKWFIEVDLDTAMQR 267 (313)
Q Consensus 188 ~~~~~~~l~~l~~~~~~~~~~LSgG~kqRv~ia~al~~~ar~Li~d~~~lllDE~~~~~l~~l~~~~i~vtHd~~~~~~r 267 (313)
.+.+.+.|..+..+.....|.|+.....|..- .....+.+++|+|+.+++.+ ..+.++++..||++.+.++.+.|
T Consensus 69 ~~~l~~~l~~L~~g~~i~~P~yd~~~~~~~~~-~~~i~p~~ViIvEGi~~l~~----~~l~~l~D~~ifvd~~~d~~~~R 143 (210)
T PTZ00301 69 HDLLTTHLRELKSGKTVQIPQYDYVHHTRSDT-AVTMTPKSVLIVEGILLFTN----AELRNEMDCLIFVDTPLDICLIR 143 (210)
T ss_pred HHHHHHHHHHHHcCCcccCCCcccccCCcCCc-eEEeCCCcEEEEechhhhCC----HHHHHhCCEEEEEeCChhHHHHH
Confidence 99999999999877777888888776666542 22335679999999999777 46788889999999999999998
Q ss_pred Hhhcccc-cCCchHHHHHHHHhcCCchhH-HhhhcccCccEEeecC
Q 021362 268 VLKRHIS-TGKPPDVAKWRIEYNDRPNAE-LIMKSKKNADLVIKSI 311 (313)
Q Consensus 268 v~griv~-~G~~~ev~~~~~~~~~~~~~~-~i~~~~~~ad~ii~~~ 311 (313)
.+.|.+. .|.+.+-+..+|..++.|+.. ||.|++..||+||++.
T Consensus 144 r~~Rd~~~rG~~~e~v~~~~~~~v~~~~~~~I~p~k~~ADiIi~~~ 189 (210)
T PTZ00301 144 RAKRDMRERGRTFESVIEQYEATVRPMYYAYVEPSKVYADIIVPSW 189 (210)
T ss_pred HHhhhHHhcCCCHHHHHHHHHHhhcccHHHHcCccccCCcEEEcCC
Confidence 8877775 788877777777877666665 9999999999999753
|
|
| >KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.77 E-value=9.5e-19 Score=167.93 Aligned_cols=200 Identities=14% Similarity=0.066 Sum_probs=131.1
Q ss_pred EEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCCCCeEEEEe
Q 021362 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLP 156 (313)
Q Consensus 77 ~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~~~~i~~v~ 156 (313)
-+.++|+++.|.+.. +++|+.|++.+|+-+||+|+|||||||+|++|+|-.. |..-.+ .+.+
T Consensus 75 dvk~~sls~s~~g~~----l~kd~~~El~~g~rygLiG~nG~Gkst~L~~i~~~e~---P~p~~~-----------d~y~ 136 (614)
T KOG0927|consen 75 DVKIESLSLSFHGVE----LIKDVTLELNRGRRYGLIGPNGSGKSTFLRAIAGREV---PIPEHI-----------DFYL 136 (614)
T ss_pred cceeeeeeeccCCce----eeeeeeEEecCCceEEEEcCCCCcHhHHHHHHhcCCC---CCCccc-----------chhh
Confidence 599999999999888 9999999999999999999999999999999999987 643222 2111
Q ss_pred cCCCCCCcccCCcccChH-----------HHHHhcCC--------------------CCCccHHHHHHHHHHhhc---CC
Q 021362 157 MDGFHLYLSQLDAMEDPK-----------EAHARRGA--------------------PWTFNPLLLLNCLKNLRN---QG 202 (313)
Q Consensus 157 qd~~~~~~~~ltv~e~~~-----------~~~~~~~~--------------------~~~~~~~~~~~~l~~l~~---~~ 202 (313)
.+....+. ..++.+.+. +....+.. .......++..+|..++. ..
T Consensus 137 ls~e~~ps-~~~av~~v~~~~~~e~~rle~~~E~l~~~~d~~~~~~l~~~~~r~~~~d~~~~~~k~~~il~glgf~~~m~ 215 (614)
T KOG0927|consen 137 LSREIEPS-EKQAVQAVVMETDHERKRLEYLAEDLAQACDDKEKDELDELYERLDEMDNDTFEAKAAKILHGLGFLSEMQ 215 (614)
T ss_pred hcccCCCc-hHHHHHHHhhhhHHHHHHHHHHHHHHHhhccchhhhHHHHHHHHHHhhCchhHHHHHHHHHHhcCCCHhHH
Confidence 11111111 111111111 11111100 001111223333333331 23
Q ss_pred CccCCCCCCcCCCcchhhhhhccCceEEEEcCCccccChhhHHHHHhhc---cc--eEEEEcChHHHHH---HHh----h
Q 021362 203 SVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMF---DE--KWFIEVDLDTAMQ---RVL----K 270 (313)
Q Consensus 203 ~~~~~~LSgG~kqRv~ia~al~~~ar~Li~d~~~lllDE~~~~~l~~l~---~~--~i~vtHd~~~~~~---rv~----g 270 (313)
.+....||||++.|+++|++|...+.+|++|+|+..||-+....|.++. +. .++++|+.++.-. .|+ +
T Consensus 216 ~k~~~~~SgGwrmR~aLAr~Lf~kP~LLLLDEPtnhLDleA~~wLee~L~k~d~~~lVi~sh~QDfln~vCT~Ii~l~~k 295 (614)
T KOG0927|consen 216 DKKVKDLSGGWRMRAALARALFQKPDLLLLDEPTNHLDLEAIVWLEEYLAKYDRIILVIVSHSQDFLNGVCTNIIHLDNK 295 (614)
T ss_pred HHHhhccCchHHHHHHHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHhccCceEEEEecchhhhhhHhhhhheeccc
Confidence 5567799999999999999999999999999999999986665565554 33 3699999999887 666 5
Q ss_pred ccc-ccCCchHHHHHHHHhcCCchhH
Q 021362 271 RHI-STGKPPDVAKWRIEYNDRPNAE 295 (313)
Q Consensus 271 riv-~~G~~~ev~~~~~~~~~~~~~~ 295 (313)
+.+ ..|+-++.+..+-+....++.+
T Consensus 296 kl~~y~Gnydqy~~tr~E~~~~q~K~ 321 (614)
T KOG0927|consen 296 KLIYYEGNYDQYVKTRSELEENQMKA 321 (614)
T ss_pred ceeeecCCHHHHhhHHHHHhHHHHHH
Confidence 634 5677777665544444334433
|
|
| >KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.8e-18 Score=165.24 Aligned_cols=190 Identities=13% Similarity=0.042 Sum_probs=121.6
Q ss_pred EEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCCCCeEEEEe
Q 021362 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLP 156 (313)
Q Consensus 77 ~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~~~~i~~v~ 156 (313)
=|.+.+++..||++. +|.+-++++..|..+||+|+||+|||||||+|+. |.|.....+-.-..-++.
T Consensus 80 Di~~~~fdLa~G~k~----LL~~a~L~L~~GrRYGLvGrNG~GKsTLLRaia~---------~~v~~f~veqE~~g~~t~ 146 (582)
T KOG0062|consen 80 DIHIDNFDLAYGGKI----LLNKANLTLSRGRRYGLVGRNGIGKSTLLRAIAN---------GQVSGFHVEQEVRGDDTE 146 (582)
T ss_pred ceeeeeeeeeecchh----hhcCCceeeecccccceeCCCCCcHHHHHHHHHh---------cCcCccCchhheeccchH
Confidence 378889999999988 9999999999999999999999999999999987 112111110000011111
Q ss_pred cCCCCCCcccCCcccChHHHHHhcCCCCCccHHHHHH-HHHHhhcC---CCccCCCCCCcCCCcchhhhhhccCceEEEE
Q 021362 157 MDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLN-CLKNLRNQ---GSVYAPSFDHGVGDPVEDDILVGLQHKVVIV 232 (313)
Q Consensus 157 qd~~~~~~~~ltv~e~~~~~~~~~~~~~~~~~~~~~~-~l~~l~~~---~~~~~~~LSgG~kqRv~ia~al~~~ar~Li~ 232 (313)
-.... ...++.+.+.+..-.. .......+.+.. +|..+|.. ..++..+||||.|.|+++|+|+..+|++|++
T Consensus 147 ~~~~~-l~~D~~~~dfl~~e~~---l~~~~~l~ei~~~~L~glGFt~emq~~pt~slSGGWrMrlaLARAlf~~pDlLLL 222 (582)
T KOG0062|consen 147 ALQSV-LESDTERLDFLAEEKE---LLAGLTLEEIYDKILAGLGFTPEMQLQPTKSLSGGWRMRLALARALFAKPDLLLL 222 (582)
T ss_pred HHhhh-hhccHHHHHHHHhhhh---hhccchHHHHHHHHHHhCCCCHHHHhccccccCcchhhHHHHHHHHhcCCCEEee
Confidence 11000 0111122221111100 111112233333 77778743 3456779999999999999999999999999
Q ss_pred cCCccccChhhHHHHHhhcc----ceEEEEcChHHHHH---HHh---hccc--ccCCchHHHH
Q 021362 233 DGNYLFLDGGVWKDVSSMFD----EKWFIEVDLDTAMQ---RVL---KRHI--STGKPPDVAK 283 (313)
Q Consensus 233 d~~~lllDE~~~~~l~~l~~----~~i~vtHd~~~~~~---rv~---griv--~~G~~~ev~~ 283 (313)
|+|+..||-.....|..... ..++|+||-++.-. .|+ ++-+ ..|.-+++.+
T Consensus 223 DEPTNhLDv~av~WLe~yL~t~~~T~liVSHDr~FLn~V~tdIIH~~~~kL~~YkGN~~~Fvk 285 (582)
T KOG0062|consen 223 DEPTNHLDVVAVAWLENYLQTWKITSLIVSHDRNFLNTVCTDIIHLENLKLDYYKGNYSQFVK 285 (582)
T ss_pred cCCcccchhHHHHHHHHHHhhCCceEEEEeccHHHHHHHHHHHHHHhhhhhhhhcCcHHHHHH
Confidence 99999999865555555543 35799999988766 454 3322 2466555544
|
|
| >PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.6e-17 Score=148.46 Aligned_cols=191 Identities=38% Similarity=0.627 Sum_probs=143.9
Q ss_pred cCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCCCCeEEEEecCCCCCCcccCCcccChHHHHHhcCCC
Q 021362 104 VNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAP 183 (313)
Q Consensus 104 i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~~~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~ 183 (313)
-.+..++||.||||||||||++.|+++++ ++.|.+.+ .+..|+++.....+. ++ .. ....+.+
T Consensus 30 ~~~~~iigi~G~~GsGKTTl~~~L~~~l~---~~~g~~~v----------~i~~D~~~~~~~~~~--~~-g~-~~~~~~~ 92 (229)
T PRK09270 30 PQRRTIVGIAGPPGAGKSTLAEFLEALLQ---QDGELPAI----------QVPMDGFHLDNAVLD--AH-GL-RPRKGAP 92 (229)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHhh---hccCCceE----------EEecccccCCHHHHH--hc-cc-ccccCCC
Confidence 35678999999999999999999999998 77775432 055665544321100 00 00 0113345
Q ss_pred CCccHHHHHHHHHHhhcCC-CccCCCCCCcCCCcchhhhhhccCceEEEEcCCccccChhhHHHHHhhccceEEEEcChH
Q 021362 184 WTFNPLLLLNCLKNLRNQG-SVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEKWFIEVDLD 262 (313)
Q Consensus 184 ~~~~~~~~~~~l~~l~~~~-~~~~~~LSgG~kqRv~ia~al~~~ar~Li~d~~~lllDE~~~~~l~~l~~~~i~vtHd~~ 262 (313)
..++...+.+++..+.... ....+.++....+.+.-...+....++++.|+.++++++..|..+..+++..++++-+.+
T Consensus 93 ~~~d~~~~~~~l~~l~~~~~~i~~P~yD~~~~~~~~~~~~~~~~~~ivIvEG~~~l~~~~~~~~l~~~~D~vi~v~~~~~ 172 (229)
T PRK09270 93 ETFDVAGLAALLRRLRAGDDEVYWPVFDRSLEDPVADAIVVPPTARLVIVEGNYLLLDEEPWRRLAGLFDFTIFLDAPAE 172 (229)
T ss_pred CCCCHHHHHHHHHHHHcCCCceecccCCcccCCCCCCceEecCCCCEEEEcCcceeeccccHHHHHhhCCEEEEEECCHH
Confidence 5667777778888887554 567777887776655433233335789999999999998889999999999999999999
Q ss_pred HHHHHHhhcccccCCchHHHHHHHHhcCCchhHHhhhcccCccEEeecC
Q 021362 263 TAMQRVLKRHISTGKPPDVAKWRIEYNDRPNAELIMKSKKNADLVIKSI 311 (313)
Q Consensus 263 ~~~~rv~griv~~G~~~ev~~~~~~~~~~~~~~~i~~~~~~ad~ii~~~ 311 (313)
...+|+..|....|...+-+..++..+++++.+++.+.+..||+||.+.
T Consensus 173 ~~~~R~~~R~~~~g~s~~~~~~~~~~~~~~~~~~i~~~~~~ad~vI~n~ 221 (229)
T PRK09270 173 VLRERLVARKLAGGLSPEAAEAFVLRNDGPNARLVLETSRPADLVLEMT 221 (229)
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHhcChHHHHHHHhcCCCCCEEEEec
Confidence 9888888776678888787888888889999999999999999999875
|
|
| >PRK00349 uvrA excinuclease ABC subunit A; Reviewed | Back alignment and domain information |
|---|
Probab=99.75 E-value=2.2e-18 Score=179.60 Aligned_cols=94 Identities=20% Similarity=0.186 Sum_probs=75.1
Q ss_pred HHHHHHHhhcC---CCccCCCCCCcCCCcchhhhhhccCc---eEEEEcCCccccCh----hhHHHHHhhccc---eEEE
Q 021362 191 LLNCLKNLRNQ---GSVYAPSFDHGVGDPVEDDILVGLQH---KVVIVDGNYLFLDG----GVWKDVSSMFDE---KWFI 257 (313)
Q Consensus 191 ~~~~l~~l~~~---~~~~~~~LSgG~kqRv~ia~al~~~a---r~Li~d~~~lllDE----~~~~~l~~l~~~---~i~v 257 (313)
..+.|+.++.. .++.+.+|||||+||+.||++++.++ .++++|+|+..||. .+++.|.++.+. .|+|
T Consensus 810 ~l~~L~~vgL~~l~l~~~~~tLSgGEkQRl~LAraL~~~p~~~~llILDEPtsGLD~~~~~~L~~~L~~l~~~G~TVIii 889 (943)
T PRK00349 810 KLQTLVDVGLGYIKLGQPATTLSGGEAQRVKLAKELSKRSTGKTLYILDEPTTGLHFEDIRKLLEVLHRLVDKGNTVVVI 889 (943)
T ss_pred HHHHHHHCCCCcccccCCcccCCHHHHHHHHHHHHHhcCCCCCeEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEE
Confidence 35667777743 46678899999999999999999998 99999999999999 556666665433 4799
Q ss_pred EcChHHHHH--HHh----------hcccccCCchHHHHH
Q 021362 258 EVDLDTAMQ--RVL----------KRHISTGKPPDVAKW 284 (313)
Q Consensus 258 tHd~~~~~~--rv~----------griv~~G~~~ev~~~ 284 (313)
|||++++.. +++ |++++.|+++++..+
T Consensus 890 tH~~~~i~~aD~ii~Lgp~~G~~~G~Iv~~Gt~~el~~~ 928 (943)
T PRK00349 890 EHNLDVIKTADWIIDLGPEGGDGGGEIVATGTPEEVAKV 928 (943)
T ss_pred ecCHHHHHhCCEEEEecCCcCCCCCEEEEeCCHHHHHhC
Confidence 999999865 443 688999999888653
|
|
| >COG0572 Udk Uridine kinase [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.5e-17 Score=145.25 Aligned_cols=183 Identities=28% Similarity=0.402 Sum_probs=143.5
Q ss_pred CCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCCCCeEEEEecCCCCCCcccCCcccChHHHHHhcCCCC
Q 021362 105 NVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPW 184 (313)
Q Consensus 105 ~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~~~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~~ 184 (313)
++.-++||.|+|||||||+.+.|.-.++ . ..+.+++||+|+-.....+..++.. ..+..|.
T Consensus 6 ~~~iiIgIaG~SgSGKTTva~~l~~~~~---~-------------~~~~~I~~D~YYk~~~~~~~~~~~~---~n~d~p~ 66 (218)
T COG0572 6 EKVIIIGIAGGSGSGKTTVAKELSEQLG---V-------------EKVVVISLDDYYKDQSHLPFEERNK---INYDHPE 66 (218)
T ss_pred CceEEEEEeCCCCCCHHHHHHHHHHHhC---c-------------CcceEeeccccccchhhcCHhhcCC---cCccChh
Confidence 3457999999999999999999999996 1 2467899998876543333322221 2455778
Q ss_pred CccHHHHHHHHHHhhcCCCccCCCCCCcCCCcchhhhhhccCceEEEEcCCccccChhhHHHHHhhccceEEEEcChHHH
Q 021362 185 TFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEKWFIEVDLDTA 264 (313)
Q Consensus 185 ~~~~~~~~~~l~~l~~~~~~~~~~LSgG~kqRv~ia~al~~~ar~Li~d~~~lllDE~~~~~l~~l~~~~i~vtHd~~~~ 264 (313)
+++.+.+.+.|..+..+.....|.||.-+..|.. -..-..+.+++++|+-+++.| +.|+++++-.|||+-|.+..
T Consensus 67 A~D~dLl~~~L~~L~~g~~v~~P~yd~~~~~r~~-~~i~~~p~~VVIvEGi~~l~d----~~lr~~~d~kIfvdtd~D~R 141 (218)
T COG0572 67 AFDLDLLIEHLKDLKQGKPVDLPVYDYKTHTREP-ETIKVEPNDVVIVEGILLLYD----ERLRDLMDLKIFVDTDADVR 141 (218)
T ss_pred hhcHHHHHHHHHHHHcCCcccccccchhcccccC-CccccCCCcEEEEeccccccc----HHHHhhcCEEEEEeCCccHH
Confidence 8899999999999988888888888877777763 222445689999999999999 58888999999999998888
Q ss_pred HHHHhhccc-ccCCchHHHHHHHHhcCCchhH-HhhhcccCccEEeecC
Q 021362 265 MQRVLKRHI-STGKPPDVAKWRIEYNDRPNAE-LIMKSKKNADLVIKSI 311 (313)
Q Consensus 265 ~~rv~griv-~~G~~~ev~~~~~~~~~~~~~~-~i~~~~~~ad~ii~~~ 311 (313)
..|.+-|.+ ++|..-+-..++|...++|+++ ||+|+++.||++++..
T Consensus 142 liRri~RD~~~rg~~~e~vi~qy~~~vkp~~~~fIeptk~~ADiiip~~ 190 (218)
T COG0572 142 LIRRIKRDVQERGRDLESVIEQYVKTVRPMYEQFIEPTKKYADIIIPSG 190 (218)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHhhChhhhhccCcccccceEEeecC
Confidence 886665555 5777655555557889999998 9999999999999864
|
|
| >COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.75 E-value=5.5e-18 Score=161.63 Aligned_cols=204 Identities=16% Similarity=0.120 Sum_probs=157.5
Q ss_pred ccEEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCC-C----
Q 021362 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP-P---- 149 (313)
Q Consensus 75 m~~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~-~---- 149 (313)
-++|++++|+..-... ...+++|||+|..|||+||.|-.|-|-+.|+..|+|+.+ |.+|+|.++|++. .
T Consensus 255 ~~vL~V~~L~v~~~~~---~~~v~~vs~~Vr~GEIvGIAGV~GNGQ~eL~eaisGlr~---~~~G~I~l~G~~v~~~~~~ 328 (501)
T COG3845 255 EVVLEVEDLSVKDRRG---VTAVKDVSFEVRAGEIVGIAGVAGNGQSELVEAISGLRK---PASGRILLNGKDVLGRLSP 328 (501)
T ss_pred CeEEEEeeeEeecCCC---CceeeeeeeEEecCcEEEEEecCCCCHHHHHHHHhCCCc---cCCceEEECCEeccccCCH
Confidence 4589999999876542 238999999999999999999999999999999999998 8899999999874 1
Q ss_pred -----CeEEEEecCCCC-CCcccCCcccChHHHHHhc------C-CCCCccHHHHHHHHHHhhc---CCCccCCCCCCcC
Q 021362 150 -----DVATVLPMDGFH-LYLSQLDAMEDPKEAHARR------G-APWTFNPLLLLNCLKNLRN---QGSVYAPSFDHGV 213 (313)
Q Consensus 150 -----~~i~~v~qd~~~-~~~~~ltv~e~~~~~~~~~------~-~~~~~~~~~~~~~l~~l~~---~~~~~~~~LSgG~ 213 (313)
.-++|||.|... -.-..+++.||+.+..... + ..+......+.++++.++- ....++..||||.
T Consensus 329 ~~~r~~G~~~VPedR~~~Glv~~~sl~eN~vL~~~~~~~~~~~g~l~~~~i~~~a~~li~~fdVr~~~~~~~a~~LSGGN 408 (501)
T COG3845 329 RERRRLGLAYVPEDRHGHGLVLDLSLAENLVLGRHDKKPFSRGGFLDRRAIRKFARELIEEFDVRAPSPDAPARSLSGGN 408 (501)
T ss_pred HHHHhcCCccCChhhccCccccCccHHHHhhhhhccccccccccccCHHHHHHHHHHHHHHcCccCCCCCcchhhcCCcc
Confidence 248999998622 1223589999998764321 1 1112233445667777762 3445677999999
Q ss_pred CCcchhhhhhccCceEEEEcCCccccCh----hhHHHHHhhccce---EEEEcChHHHHH---HHh----hcccccCCch
Q 021362 214 GDPVEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFDEK---WFIEVDLDTAMQ---RVL----KRHISTGKPP 279 (313)
Q Consensus 214 kqRv~ia~al~~~ar~Li~d~~~lllDE----~~~~~l~~l~~~~---i~vtHd~~~~~~---rv~----griv~~G~~~ 279 (313)
+||+-+|+=+..++++|+..-|+-.||- .+.+.|.+..+.+ ++|+-|+++++. |+. ||++...+++
T Consensus 409 qQK~IlaREl~~~p~lLI~~qPTrGLDvgA~~~I~~~l~e~r~~G~AVLLiS~dLDEil~lsDrIaVi~~Gri~~~~~~~ 488 (501)
T COG3845 409 QQKLILARELARRPDLLIAAQPTRGLDVGAIEFIHERLLELRDAGKAVLLISEDLDEILELSDRIAVIYEGRIVGIVPPE 488 (501)
T ss_pred eehhhhhhhhccCCCEEEEcCCCccccHHHHHHHHHHHHHHHhcCCEEEEEehhHHHHHHhhheeeeeeCCceecccccc
Confidence 9999999999999999999999999998 4555555555553 699999999998 554 8988777776
Q ss_pred HHHHH
Q 021362 280 DVAKW 284 (313)
Q Consensus 280 ev~~~ 284 (313)
+...+
T Consensus 489 ~~t~~ 493 (501)
T COG3845 489 EATRE 493 (501)
T ss_pred cCCHH
Confidence 64433
|
|
| >cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains | Back alignment and domain information |
|---|
Probab=99.75 E-value=2.2e-18 Score=151.42 Aligned_cols=143 Identities=13% Similarity=0.016 Sum_probs=98.4
Q ss_pred cccCCCcEEEEECCCCCcHHHHHHHHH----HHhcccCCCCceeecCC-----CCCCCeEEEEecCCC-CCC--cccCCc
Q 021362 102 SNVNVKHIVGLAGPPGAGKSTLAAEVV----RRINKIWPQKASSFDSQ-----VKPPDVATVLPMDGF-HLY--LSQLDA 169 (313)
Q Consensus 102 l~i~~Geiv~l~GpNGsGKSTLlk~l~----gl~~~~~p~~G~i~~~g-----~~~~~~i~~v~qd~~-~~~--~~~ltv 169 (313)
+++.+| +++|+||||||||||+++|. |... |++|.+..+. ......+++++|+.. ..+ ...+++
T Consensus 18 l~~~~g-~~~i~G~NGsGKTTLl~ai~~~l~G~~~---~~~~~~~~~~~~i~~~~~~~~v~~~f~~~~~~~~~v~r~~~~ 93 (204)
T cd03240 18 IEFFSP-LTLIVGQNGAGKTTIIEALKYALTGELP---PNSKGGAHDPKLIREGEVRAQVKLAFENANGKKYTITRSLAI 93 (204)
T ss_pred EecCCC-eEEEECCCCCCHHHHHHHHHHHHcCCCC---cccccccchHHHHhCCCCcEEEEEEEEeCCCCEEEEEEEhhH
Confidence 455566 99999999999999999996 6555 7777554111 113346888998852 111 112466
Q ss_pred ccChHHHHHhcCCCCCccHHHHHHHHHHhhcCCCccCCCCCCcCCCc------chhhhhhccCceEEEEcCCccccChh-
Q 021362 170 MEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDP------VEDDILVGLQHKVVIVDGNYLFLDGG- 242 (313)
Q Consensus 170 ~e~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~LSgG~kqR------v~ia~al~~~ar~Li~d~~~lllDE~- 242 (313)
++|+.+. + ...+.+.+ +..+.+||+||+|| ++++++++.+++++++|+|+..||+.
T Consensus 94 ~~~~~~~------~----~~~~~~~~-------~~~~~~LS~G~~~~~~la~rlala~al~~~p~illlDEP~~~LD~~~ 156 (204)
T cd03240 94 LENVIFC------H----QGESNWPL-------LDMRGRCSGGEKVLASLIIRLALAETFGSNCGILALDEPTTNLDEEN 156 (204)
T ss_pred hhceeee------c----hHHHHHHH-------hcCccccCccHHHHHHHHHHHHHHHHhccCCCEEEEcCCccccCHHH
Confidence 6666432 1 12222222 55677999999996 68888999999999999999999973
Q ss_pred ----hHHHHHhhcc----ceEEEEcChHHHH
Q 021362 243 ----VWKDVSSMFD----EKWFIEVDLDTAM 265 (313)
Q Consensus 243 ----~~~~l~~l~~----~~i~vtHd~~~~~ 265 (313)
+.+.|.++.+ ..+++||+++.+.
T Consensus 157 ~~~~l~~~l~~~~~~~~~~iiiitH~~~~~~ 187 (204)
T cd03240 157 IEESLAEIIEERKSQKNFQLIVITHDEELVD 187 (204)
T ss_pred HHHHHHHHHHHHHhccCCEEEEEEecHHHHh
Confidence 4455555544 2479999988764
|
The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence. |
| >KOG0060 consensus Long-chain acyl-CoA transporter, ABC superfamily (involved in peroxisome organization and biogenesis) [Lipid transport and metabolism; General function prediction only] | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.7e-17 Score=160.38 Aligned_cols=183 Identities=13% Similarity=-0.011 Sum_probs=128.1
Q ss_pred cEEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCCCCeEEEE
Q 021362 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVL 155 (313)
Q Consensus 76 ~~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~~~~i~~v 155 (313)
++|++++|+..-.+. ...+++|+||+|.+|+-+.|.||||||||.|+|.++|+-+ -.+|++..-.....+.+-|+
T Consensus 432 n~i~~e~v~l~tPt~--g~~lie~Ls~~V~~g~~LLItG~sG~GKtSLlRvlggLWp---~~~G~l~k~~~~~~~~lffl 506 (659)
T KOG0060|consen 432 NAIEFEEVSLSTPTN--GDLLIENLSLEVPSGQNLLITGPSGCGKTSLLRVLGGLWP---STGGKLTKPTDGGPKDLFFL 506 (659)
T ss_pred ceEEeeeeeecCCCC--CceeeeeeeeEecCCCeEEEECCCCCchhHHHHHHhcccc---cCCCeEEecccCCCCceEEe
Confidence 589999999988763 2237899999999999999999999999999999999985 58899886554444568999
Q ss_pred ecCCCCCCcccCCcccChHHHHHhc-CCCCCccHHHHHHHHHHhhc--------CCC----c-cCCCCCCcCCCcchhhh
Q 021362 156 PMDGFHLYLSQLDAMEDPKEAHARR-GAPWTFNPLLLLNCLKNLRN--------QGS----V-YAPSFDHGVGDPVEDDI 221 (313)
Q Consensus 156 ~qd~~~~~~~~ltv~e~~~~~~~~~-~~~~~~~~~~~~~~l~~l~~--------~~~----~-~~~~LSgG~kqRv~ia~ 221 (313)
||-||... =|.+|.+-++.... ...+..+.+++.+.|+.++. +.+ . -...||+||+||+++||
T Consensus 507 PQrPYmt~---GTLRdQvIYP~~~~~~~~~~~~d~~i~r~Le~v~L~hl~~r~ggld~~~~~dW~dvLS~GEqQRLa~AR 583 (659)
T KOG0060|consen 507 PQRPYMTL---GTLRDQVIYPLKAEDMDSKSASDEDILRILENVQLGHLLEREGGLDQQVDWDWMDVLSPGEQQRLAFAR 583 (659)
T ss_pred cCCCCccc---cchhheeeccCccccccccCCCHHHHHHHHHHhhhhhHHHHhCCCCchhhccHHhhcCHHHHHHHHHHH
Confidence 99987543 28889888874322 12223344556666665541 112 1 23399999999999966
Q ss_pred hhccCceEEEEcCCccccChhhHHHHHhhccc----eEEEEcChHHHHH
Q 021362 222 LVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE----KWFIEVDLDTAMQ 266 (313)
Q Consensus 222 al~~~ar~Li~d~~~lllDE~~~~~l~~l~~~----~i~vtHd~~~~~~ 266 (313)
.+-++|+.-++|+-+.-+||++-..+-+.+.+ -|-|.|-..+...
T Consensus 584 Lfy~kPk~AiLDE~TSAv~~dvE~~~Yr~~r~~giT~iSVgHRkSL~kf 632 (659)
T KOG0060|consen 584 LFYHKPKFAILDECTSAVTEDVEGALYRKCREMGITFISVGHRKSLWKF 632 (659)
T ss_pred HHhcCCceEEeechhhhccHHHHHHHHHHHHHcCCeEEEeccHHHHHhh
Confidence 66666665555555555555544444444433 3566787766554
|
|
| >cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2 | Back alignment and domain information |
|---|
Probab=99.73 E-value=1e-16 Score=139.84 Aligned_cols=178 Identities=24% Similarity=0.354 Sum_probs=129.2
Q ss_pred EEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCCCCeEEEEecCCCCCCcccCCcccChHHHHHhcCCCCCccH
Q 021362 109 IVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNP 188 (313)
Q Consensus 109 iv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~~~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~~~~~~ 188 (313)
++||.||||||||||+++|.+++. ...+.++++|+++.. ++..+........++.+..++.
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~l~----------------~~~~~v~~~D~~~~~---~~~~~~~~~~~~~~~~~~~~~~ 61 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQLG----------------NPKVVIISQDSYYKD---LSHEELEERKNNNYDHPDAFDF 61 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHhC----------------CCCeEEEEecccccc---cccccHHHhccCCCCCCCcccH
Confidence 589999999999999999999883 123567888876533 3333333322223455666677
Q ss_pred HHHHHHHHHhhcCCCc--cCCCCCCcCCCcchhhhhhccCceEEEEcCCccccChhhHHHHHhhccceEEEEcChHHHHH
Q 021362 189 LLLLNCLKNLRNQGSV--YAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEKWFIEVDLDTAMQ 266 (313)
Q Consensus 189 ~~~~~~l~~l~~~~~~--~~~~LSgG~kqRv~ia~al~~~ar~Li~d~~~lllDE~~~~~l~~l~~~~i~vtHd~~~~~~ 266 (313)
+.+.+.|..+...... +...+|.|++++..+ ...++.+++.|+.+++.++ .+.+.++..|+|..+.+....
T Consensus 62 ~~~~~~l~~l~~~~~~~~p~~d~~~~~~~~~~~---~i~~~~~vI~eg~~~~~~~----~~~~~~d~~i~v~~~~~~~~~ 134 (198)
T cd02023 62 DLLISHLQDLKNGKSVEIPVYDFKTHSRLKETV---TVYPADVIILEGILALYDK----ELRDLMDLKIFVDTDADVRLI 134 (198)
T ss_pred HHHHHHHHHHHCCCCEeccccccccCcccCCce---ecCCCCEEEEechhhccch----hHHhhcCeEEEEECChhHHHH
Confidence 7777888888754443 334778888776555 4567889999999988874 455667888999999998877
Q ss_pred HHhhccc-ccCCchHHHHHHHHhcCCchhH-HhhhcccCccEEeecCC
Q 021362 267 RVLKRHI-STGKPPDVAKWRIEYNDRPNAE-LIMKSKKNADLVIKSID 312 (313)
Q Consensus 267 rv~griv-~~G~~~ev~~~~~~~~~~~~~~-~i~~~~~~ad~ii~~~~ 312 (313)
|.+.|.. ..|...+-...+|.....++.. ++.+.+..||+||++.+
T Consensus 135 R~~~Rd~~~rg~~~~~~~~~~~~~~~~~~~~~i~~~~~~aD~ii~~~~ 182 (198)
T cd02023 135 RRIERDIVERGRDLESVINQYLKFVKPMHEQFIEPTKRYADVIIPRGG 182 (198)
T ss_pred HHHHHHhhhcCCCHHHHHHHHHHhhhhhHHHhCccchhceeEEECCCC
Confidence 7775654 5676666556778888888886 88889999999998653
|
7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine. |
| >PRK00635 excinuclease ABC subunit A; Provisional | Back alignment and domain information |
|---|
Probab=99.72 E-value=8.4e-18 Score=182.61 Aligned_cols=117 Identities=10% Similarity=-0.043 Sum_probs=83.2
Q ss_pred cCCcccChHHHHHh---cCCCCCccHHHHHHHHHHhhcC---CCccCCCCCCcCCCcchhhhhhc---cCceEEEEcCCc
Q 021362 166 QLDAMEDPKEAHAR---RGAPWTFNPLLLLNCLKNLRNQ---GSVYAPSFDHGVGDPVEDDILVG---LQHKVVIVDGNY 236 (313)
Q Consensus 166 ~ltv~e~~~~~~~~---~~~~~~~~~~~~~~~l~~l~~~---~~~~~~~LSgG~kqRv~ia~al~---~~ar~Li~d~~~ 236 (313)
..|+.|++.+...- +........+++ ++|+.++.. .++.+.+|||||+||++||++++ .+++++++|+|+
T Consensus 762 ~~tI~evL~mtv~ea~~~f~~~~~i~~~l-~~L~~vGL~~l~l~q~~~tLSGGE~QRV~LAraL~~~~~~P~LLILDEPT 840 (1809)
T PRK00635 762 GKNIADILEMTAYEAEKFFLDEPSIHEKI-HALCSLGLDYLPLGRPLSSLSGGEIQRLKLAYELLAPSKKPTLYVLDEPT 840 (1809)
T ss_pred CCCHHHHHHcCHHHHHHcccChHHHHHHH-HHHHHcCCcchhhcCccccCCHHHHHHHHHHHHHhhcCCCCCEEEEeCCC
Confidence 35667777664331 112222233344 567777743 46677899999999999999997 589999999999
Q ss_pred cccCh----hhHHHHHhhccc---eEEEEcChHHHHH--HHh----------hcccccCCchHHHH
Q 021362 237 LFLDG----GVWKDVSSMFDE---KWFIEVDLDTAMQ--RVL----------KRHISTGKPPDVAK 283 (313)
Q Consensus 237 lllDE----~~~~~l~~l~~~---~i~vtHd~~~~~~--rv~----------griv~~G~~~ev~~ 283 (313)
..||. .+++.|.++.+. .|+||||++++.. |++ |++++.|+++++..
T Consensus 841 sGLD~~~~~~Ll~lL~~L~~~G~TVIiIsHdl~~i~~aDrVi~L~p~gg~~~G~iv~~Gtpeel~~ 906 (1809)
T PRK00635 841 TGLHTHDIKALIYVLQSLTHQGHTVVIIEHNMHVVKVADYVLELGPEGGNLGGYLLASCSPEELIH 906 (1809)
T ss_pred CCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhCCEEEEEccCCCCCCCEEEEeCCHHHHHh
Confidence 99999 455555555433 4799999999843 443 57889999998864
|
|
| >cd03276 ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains | Back alignment and domain information |
|---|
Probab=99.72 E-value=3e-17 Score=143.57 Aligned_cols=148 Identities=11% Similarity=0.035 Sum_probs=101.3
Q ss_pred cccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCC-----ce----eecCCCCCCCeEEEEecCCCCCCccc
Q 021362 96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQK-----AS----SFDSQVKPPDVATVLPMDGFHLYLSQ 166 (313)
Q Consensus 96 ~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~-----G~----i~~~g~~~~~~i~~v~qd~~~~~~~~ 166 (313)
.++++++++.+| +.+|+||||||||||+..|...+. ... |. +.-.|. ....+.+.+++... .
T Consensus 11 ~~~~~~l~f~~g-l~~i~G~NGsGKStll~ai~~~l~---~~~~~~~r~~~~~~~i~~~~-~~~~i~~~~~~~~~-~--- 81 (198)
T cd03276 11 CHRHLQIEFGPR-VNFIVGNNGSGKSAILTALTIGLG---GKASDTNRGSSLKDLIKDGE-SSAKITVTLKNQGL-D--- 81 (198)
T ss_pred ceeeeEEecCCC-eEEEECCCCCcHHHHHHHHHHHhc---CCcccccccccHHHHhhCCC-CeEEEEEEEEcCCc-c---
Confidence 445667778877 789999999999999999986654 321 21 111111 12346666665321 1
Q ss_pred CCcccChHHHHHhcCCCCCccHHHHHHHHHHhhcCCCccCCCCCCcCCCcchhhhhh----ccCceEEEEcCCccccCh-
Q 021362 167 LDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILV----GLQHKVVIVDGNYLFLDG- 241 (313)
Q Consensus 167 ltv~e~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~LSgG~kqRv~ia~al----~~~ar~Li~d~~~lllDE- 241 (313)
+| .........+.++++. ....+.++.+||+|||||++||+++ +.+++++++|+|+..+|.
T Consensus 82 ----~~---------~~~~~~~~~~~~~l~~-~~~~~~~~~~lS~G~k~r~~ia~al~~~~~~~p~illlDEP~~glD~~ 147 (198)
T cd03276 82 ----AN---------PLCVLSQDMARSFLTS-NKAAVRDVKTLSGGERSFSTVCLLLSLWEVMESPFRCLDEFDVFMDMV 147 (198)
T ss_pred ----CC---------cCCHHHHHHHHHHhcc-ccccCCcccccChhHHHHHHHHHHHHHhcccCCCEEEecCcccccCHH
Confidence 11 1111123566677776 5455667889999999999999998 589999999999999999
Q ss_pred ---hhHHHHHhhcc------ceEEEEcChHHHHH
Q 021362 242 ---GVWKDVSSMFD------EKWFIEVDLDTAMQ 266 (313)
Q Consensus 242 ---~~~~~l~~l~~------~~i~vtHd~~~~~~ 266 (313)
.+.+.|.++.. ..++++|+++.+..
T Consensus 148 ~~~~~~~~l~~~~~~~~~~~~iii~th~~~~i~~ 181 (198)
T cd03276 148 NRKISTDLLVKEAKKQPGRQFIFITPQDISGLAS 181 (198)
T ss_pred HHHHHHHHHHHHHhcCCCcEEEEEECCccccccc
Confidence 46666666532 13588899999876
|
Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for |
| >PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2 | Back alignment and domain information |
|---|
Probab=99.71 E-value=7e-18 Score=146.99 Aligned_cols=185 Identities=31% Similarity=0.477 Sum_probs=130.1
Q ss_pred EEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCCCCeEEEEecCCCCCCcccCCcccChHHH--HHhcCCCCCc
Q 021362 109 IVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEA--HARRGAPWTF 186 (313)
Q Consensus 109 iv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~~~~i~~v~qd~~~~~~~~ltv~e~~~~~--~~~~~~~~~~ 186 (313)
+|||.||+|||||||.+.|...+. . .|. .....+.++..|.++... ...+.-... ...++.|.+.
T Consensus 1 IIgI~G~sgSGKTTla~~L~~~L~---~-~~~------~~~~~~~~~~~d~~~~~~---~~~~~~~~~~~~~~~~~p~a~ 67 (194)
T PF00485_consen 1 IIGIAGPSGSGKTTLAKRLAQILN---K-RGI------PAMEMDIILSLDDFYDDY---HLRDRKGRGENRYNFDHPDAF 67 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHT---T-CTT------TCCCSEEEEEGGGGBHHH---HHHHHHHHCTTTSSTTSGGGB
T ss_pred CEEEECCCCCCHHHHHHHHHHHhC---c-cCc------CccceeEEEeeccccccc---chhhHhhccccccCCCCcccc
Confidence 689999999999999999999996 1 110 011135667777654221 111100000 0112345677
Q ss_pred cHHHHHHHHHHhhcCCCccCCCCCCcCCCcchhhhhhccCceEEEEcCCccccChhhHHHHHhhccceEEEEcChHHHHH
Q 021362 187 NPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEKWFIEVDLDTAMQ 266 (313)
Q Consensus 187 ~~~~~~~~l~~l~~~~~~~~~~LSgG~kqRv~ia~al~~~ar~Li~d~~~lllDE~~~~~l~~l~~~~i~vtHd~~~~~~ 266 (313)
+.+.+.+.|..+..+.....|.|+.....+.. ...+..+.+++|.|+-++++|+. ++++++..||++.+.++.+.
T Consensus 68 d~~~l~~~l~~L~~g~~i~~p~yd~~~~~~~~-~~~~~~~~~ivIvEG~~~l~~~~----l~~l~D~~ifld~~~~~~l~ 142 (194)
T PF00485_consen 68 DFDLLKEDLKALKNGGSIEIPIYDFSTGDRDP-WIIIISPSDIVIVEGIYALYDEE----LRDLFDLKIFLDADEDLRLE 142 (194)
T ss_dssp SHHHHHHHHHHHHTTSCEEEEEEETTTTEEEE-EEEEEES-SEEEEEETTTTSSHC----HGGG-SEEEEEEE-HHHHHH
T ss_pred CHHHHHHHHHHHhCCCccccccccccccccee-eeeecCCCCEEEEcccceeeeee----ecccceeEEEecccHHHHHH
Confidence 88888899999987777788888887777666 33345678999999999999964 88899999999999999998
Q ss_pred HHhhccc-ccCCchHHHHHHHHhcCCchhH-HhhhcccCccEEeecCC
Q 021362 267 RVLKRHI-STGKPPDVAKWRIEYNDRPNAE-LIMKSKKNADLVIKSID 312 (313)
Q Consensus 267 rv~griv-~~G~~~ev~~~~~~~~~~~~~~-~i~~~~~~ad~ii~~~~ 312 (313)
|.+.|.+ +.|...+-+.++|. .++|+++ ||.|+++.||+||++.+
T Consensus 143 Rri~RD~~~rG~~~~~~~~~~~-~~~~~~~~~I~p~~~~ADivi~~~~ 189 (194)
T PF00485_consen 143 RRIQRDVAERGRSPEEVIAQYE-RVRPGYERYIEPQKERADIVIPSGP 189 (194)
T ss_dssp HHHHHHHHHS-S-HHHHHHHHH-THHHHHHHCTGGGGGG-SEEEESCT
T ss_pred HHhhhhccccCCcceeEEEEee-cCChhhhhheeccccccEEEECCCC
Confidence 8787766 57887666666677 7777766 99999999999999865
|
7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: |
| >KOG2355 consensus Predicted ABC-type transport, ATPase component/CCR4 associated factor [General function prediction only; Transcription] | Back alignment and domain information |
|---|
Probab=99.71 E-value=4.4e-17 Score=139.87 Aligned_cols=191 Identities=13% Similarity=0.008 Sum_probs=132.5
Q ss_pred EEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCCCCe-----
Q 021362 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDV----- 151 (313)
Q Consensus 77 ~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~~~~----- 151 (313)
.|++.++.+.|.... +++-|+|++++.|....++|.||||||||+|+|+|-.- .-.|.|.+.|.+.-..
T Consensus 13 aievsgl~f~y~~~d---P~~~Dfnldlp~gsRcLlVGaNGaGKtTlLKiLsGKhm---v~~~~v~VlgrsaFhDt~l~~ 86 (291)
T KOG2355|consen 13 AIEVSGLQFKYKVSD---PIFFDFNLDLPAGSRCLLVGANGAGKTTLLKILSGKHM---VGGGVVQVLGRSAFHDTSLES 86 (291)
T ss_pred eEEEeccEEecccCC---ceEEEEeeccCCCceEEEEecCCCchhhhHHHhcCccc---ccCCeEEEcCcCccccccccc
Confidence 599999999997643 48999999999999999999999999999999999654 5558888888763221
Q ss_pred ---EEEEecCCCCC--CcccCCcccChHHHHHhcCCCCCccHHHHHHHHHHhhcCCCccCCCCCCcCCCcchhhhhhccC
Q 021362 152 ---ATVLPMDGFHL--YLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQ 226 (313)
Q Consensus 152 ---i~~v~qd~~~~--~~~~ltv~e~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~LSgG~kqRv~ia~al~~~ 226 (313)
..|+--.-... ........-.+.....+++.... +.++-+++++.++....-+...+|-|||+||.|++-+.++
T Consensus 87 Sgdl~YLGgeW~~~~~~agevplq~D~sae~mifgV~g~-dp~Rre~LI~iLDIdl~WRmHkvSDGqrRRVQicMGLL~P 165 (291)
T KOG2355|consen 87 SGDLSYLGGEWSKTVGIAGEVPLQGDISAEHMIFGVGGD-DPERREKLIDILDIDLRWRMHKVSDGQRRRVQICMGLLKP 165 (291)
T ss_pred cCceeEecccccccccccccccccccccHHHHHhhccCC-ChhHhhhhhhheeccceEEEeeccccchhhhHHHHhcccc
Confidence 22222110000 00000000111111122333222 2355566666666666667789999999999999999999
Q ss_pred ceEEEEcCCccccCh----hhHHHHHhhccc----eEEEEcChHHHHH---HHh----hcccc
Q 021362 227 HKVVIVDGNYLFLDG----GVWKDVSSMFDE----KWFIEVDLDTAMQ---RVL----KRHIS 274 (313)
Q Consensus 227 ar~Li~d~~~lllDE----~~~~~l~~l~~~----~i~vtHd~~~~~~---rv~----griv~ 274 (313)
-++|++|+-++=||- .+++.+++.+++ +++.||-.+=... .++ |+++.
T Consensus 166 fkVLLLDEVTVDLDVlARadLLeFlkeEce~RgatIVYATHIFDGLe~Wpthl~yi~~Gkl~~ 228 (291)
T KOG2355|consen 166 FKVLLLDEVTVDLDVLARADLLEFLKEECEQRGATIVYATHIFDGLETWPTHLVYIKSGKLVD 228 (291)
T ss_pred eeEEEeeeeEeehHHHHHHHHHHHHHHHHhhcCcEEEEEeeeccchhhcchhEEEecCCeeee
Confidence 999999999998988 566666666654 4799999888777 333 66664
|
|
| >TIGR00235 udk uridine kinase | Back alignment and domain information |
|---|
Probab=99.71 E-value=9.5e-17 Score=141.25 Aligned_cols=182 Identities=25% Similarity=0.375 Sum_probs=128.1
Q ss_pred CCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCCCCeEEEEecCCCCCCcccCCcccChHHHHHhcCCCC
Q 021362 105 NVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPW 184 (313)
Q Consensus 105 ~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~~~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~~ 184 (313)
++|+++||+||||||||||++.|+++++ + ..++++++|+++.....+...+.. ...++.+.
T Consensus 4 ~~g~vi~I~G~sGsGKSTl~~~l~~~l~---~-------------~~~~~i~~D~~~~~~~~~~~~~~~---~~~~~~~~ 64 (207)
T TIGR00235 4 PKGIIIGIGGGSGSGKTTVARKIYEQLG---K-------------LEIVIISQDNYYKDQSHLEMAERK---KTNFDHPD 64 (207)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHHHhc---c-------------cCCeEecccccccChhhCCHHHhc---CCCCCCcc
Confidence 6899999999999999999999999985 2 235778898775432222211111 11223344
Q ss_pred CccHHHHHHHHHHhhcCCCccCCCCCCcCCCcchhhhhhccCceEEEEcCCccccChhhHHHHHhhccceEEEEcChHHH
Q 021362 185 TFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEKWFIEVDLDTA 264 (313)
Q Consensus 185 ~~~~~~~~~~l~~l~~~~~~~~~~LSgG~kqRv~ia~al~~~ar~Li~d~~~lllDE~~~~~l~~l~~~~i~vtHd~~~~ 264 (313)
..+...+.+.++.+..+.....+.++.-...+..- ........+++.|+.++++++ .+.+.++..|+++.+.+..
T Consensus 65 ~~~~~~l~~~l~~l~~g~~v~~p~yd~~~~~~~~~-~~~~~~~~~vIieG~~~~~~~----~~~~~~d~~I~v~~~~~~~ 139 (207)
T TIGR00235 65 AFDNDLLYEHLKNLKNGSPIDVPVYDYVNHTRPKE-TVHIEPKDVVILEGIMPLFDE----RLRDLMDLKIFVDTPLDIR 139 (207)
T ss_pred HhHHHHHHHHHHHHHCCCCEecccceeecCCCCCc-eEEeCCCCEEEEEehhhhchH----hHHHhCCEEEEEECChhHH
Confidence 55666677777777766666666665543333211 112345788999998887763 4667788889999999999
Q ss_pred HHHHhhccc-ccCCchHHHHHHHHhcCCchhH-HhhhcccCccEEeec
Q 021362 265 MQRVLKRHI-STGKPPDVAKWRIEYNDRPNAE-LIMKSKKNADLVIKS 310 (313)
Q Consensus 265 ~~rv~griv-~~G~~~ev~~~~~~~~~~~~~~-~i~~~~~~ad~ii~~ 310 (313)
..|++.|.+ ..|...+...++|..+++++.. ++.+.+..||+||++
T Consensus 140 l~R~~~R~~~~rg~~~~~~~~~~~~~~~~~~~~~i~~~~~~Ad~vi~~ 187 (207)
T TIGR00235 140 LIRRIERDINERGRSLDSVIDQYRKTVRPMYEQFVEPTKQYADLIIPE 187 (207)
T ss_pred HHHHHHHHHHhhCCCHHHHHHHHHHhhhhhHHHhCcccccccEEEEcC
Confidence 888776654 4677777667778888889876 889999999999975
|
Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below |
| >cd03275 ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.6e-17 Score=150.18 Aligned_cols=171 Identities=13% Similarity=0.062 Sum_probs=106.1
Q ss_pred EEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCC-------C--
Q 021362 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK-------P-- 148 (313)
Q Consensus 78 l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~-------~-- 148 (313)
|+++|. +.|.+.. .+ ...++ +++|+||||||||||+.+|++++. +..|++...+.. .
T Consensus 4 i~l~nf-~~~~~~~----~~-----~~~~~-~~~i~G~NGsGKStll~ai~~~l~---~~~~~~r~~~~~~~i~~~~~~~ 69 (247)
T cd03275 4 LELENF-KSYKGRH----VI-----GPFDR-FTCIIGPNGSGKSNLMDAISFVLG---EKSSHLRSKNLKDLIYRARVGK 69 (247)
T ss_pred EEEECc-cccCCCe----ee-----cCCCC-eEEEECCCCCCHHHHHHHHHHHhC---CCcccccccchhhhcccCcccc
Confidence 677776 6675432 22 23344 999999999999999999999997 777776543311 0
Q ss_pred ----CCeEEEEecC--CCCCCcccCCcccChHHHHHhcCCCCCccHHHHHHHHHHhhcCC--------------------
Q 021362 149 ----PDVATVLPMD--GFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQG-------------------- 202 (313)
Q Consensus 149 ----~~~i~~v~qd--~~~~~~~~ltv~e~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~-------------------- 202 (313)
...+.+.++. +..... ..++.+.... ....+ .......+.++++.++...
T Consensus 70 ~~~~~~~v~~~f~~~~~~~~~~-~~~~~~~~~~-~~ing--k~~s~~~~~~~l~~~gi~~~~~~~~i~Qg~v~~i~~~~p 145 (247)
T cd03275 70 PDSNSAYVTAVYEDDDGEEKTF-RRIITGGSSS-YRING--KVVSLKEYNEELEKINILVKARNFLVFQGDVESIASKNP 145 (247)
T ss_pred CCCceEEEEEEEEcCCCcEEEE-EEEEECCceE-EEECC--EEecHHHHHHHHHHhCCCCCCCeEEEECCchhhhhhccC
Confidence 1123334432 111000 0111111100 00111 1223445567777776321
Q ss_pred ----CccCCCCCCcCCCcchhhhhhccC----ceEEEEcCCccccCh----hhHHHHHhhccc---eEEEEcChHHHHH
Q 021362 203 ----SVYAPSFDHGVGDPVEDDILVGLQ----HKVVIVDGNYLFLDG----GVWKDVSSMFDE---KWFIEVDLDTAMQ 266 (313)
Q Consensus 203 ----~~~~~~LSgG~kqRv~ia~al~~~----ar~Li~d~~~lllDE----~~~~~l~~l~~~---~i~vtHd~~~~~~ 266 (313)
+.++.+||+||+||++||++++.+ ++++++|+|+..||. .+.+.|.++.++ .|+||||.+....
T Consensus 146 ~~~~~~~~~~LS~G~k~rl~la~al~~~~~~~p~~lllDEPt~~LD~~~~~~l~~~i~~~~~~g~~vi~isH~~~~~~~ 224 (247)
T cd03275 146 PGKRFRDMDNLSGGEKTMAALALLFAIHSYQPAPFFVLDEVDAALDNTNVGKVASYIREQAGPNFQFIVISLKEEFFSK 224 (247)
T ss_pred cchhhhhHHHcCHHHHHHHHHHHHHHHhccCCCCEEEEecccccCCHHHHHHHHHHHHHhccCCcEEEEEECCHHHHhh
Confidence 123369999999999999999864 899999999999999 456666666542 4799999776543
|
Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for |
| >TIGR00630 uvra excinuclease ABC, A subunit | Back alignment and domain information |
|---|
Probab=99.70 E-value=3.9e-17 Score=170.11 Aligned_cols=91 Identities=16% Similarity=0.166 Sum_probs=71.0
Q ss_pred HHHHHHHhhcC---CCccCCCCCCcCCCcchhhhhhcc---CceEEEEcCCccccCh----hhHHHHHhhccc---eEEE
Q 021362 191 LLNCLKNLRNQ---GSVYAPSFDHGVGDPVEDDILVGL---QHKVVIVDGNYLFLDG----GVWKDVSSMFDE---KWFI 257 (313)
Q Consensus 191 ~~~~l~~l~~~---~~~~~~~LSgG~kqRv~ia~al~~---~ar~Li~d~~~lllDE----~~~~~l~~l~~~---~i~v 257 (313)
..++|+.++.. .++...+|||||+||+.||++++. ++.++++|+|+..||. .+++.|.++.+. .|++
T Consensus 808 ~l~~L~~~gL~~l~l~~~~~tLSgGe~QRl~LA~aL~~~~~~p~llILDEPtsgLD~~~~~~L~~~L~~l~~~G~TVIvi 887 (924)
T TIGR00630 808 KLQTLCDVGLGYIKLGQPATTLSGGEAQRIKLAKELSKRSTGRTLYILDEPTTGLHFDDIKKLLEVLQRLVDQGNTVVVI 887 (924)
T ss_pred HHHHHHHcCCCchhhcCccccCCHHHHHHHHHHHHHhhcCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEE
Confidence 44566667643 356778999999999999999997 4899999999999999 456666666433 4799
Q ss_pred EcChHHHHH--HHh----------hcccccCCchHH
Q 021362 258 EVDLDTAMQ--RVL----------KRHISTGKPPDV 281 (313)
Q Consensus 258 tHd~~~~~~--rv~----------griv~~G~~~ev 281 (313)
+||++++.. +++ |++++.|+++++
T Consensus 888 ~H~~~~i~~aD~ii~Lgp~~G~~gG~iv~~G~~~~l 923 (924)
T TIGR00630 888 EHNLDVIKTADYIIDLGPEGGDGGGTIVASGTPEEV 923 (924)
T ss_pred eCCHHHHHhCCEEEEecCCccCCCCEEEEeCCHHHh
Confidence 999998865 443 578888888765
|
This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >PRK05439 pantothenate kinase; Provisional | Back alignment and domain information |
|---|
Probab=99.69 E-value=2.2e-16 Score=146.22 Aligned_cols=191 Identities=25% Similarity=0.334 Sum_probs=141.7
Q ss_pred CCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCCCCeEEEEecCCCCCCcccCCcccChHHHHHhcCCCC
Q 021362 105 NVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPW 184 (313)
Q Consensus 105 ~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~~~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~~ 184 (313)
...-++||.|++|||||||++.|..++. ... ....+.++++|+|+.+...+. ++ -....+|.|.
T Consensus 84 ~~~~iIgIaG~~gsGKSTla~~L~~~l~---~~~---------~~~~v~vi~~DdFy~~~~~l~--~~--~l~~~kg~Pe 147 (311)
T PRK05439 84 KVPFIIGIAGSVAVGKSTTARLLQALLS---RWP---------EHPKVELVTTDGFLYPNAVLE--ER--GLMKRKGFPE 147 (311)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHH---hhC---------CCCceEEEeccccccCHHHHh--hh--hccccCCCcc
Confidence 3456999999999999999999999885 110 113478899999887653222 11 0112467888
Q ss_pred CccHHHHHHHHHHhhcCCC-ccCCCCCCcCCCcchhhhhhccCceEEEEcCCccccChh--hHHHHHhhccceEEEEcCh
Q 021362 185 TFNPLLLLNCLKNLRNQGS-VYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGG--VWKDVSSMFDEKWFIEVDL 261 (313)
Q Consensus 185 ~~~~~~~~~~l~~l~~~~~-~~~~~LSgG~kqRv~ia~al~~~ar~Li~d~~~lllDE~--~~~~l~~l~~~~i~vtHd~ 261 (313)
+++.+.+.+.|..+..+.. ..+|.||.-...++.-......+++++|+|+-+++.++. -+..+.++++..|||+-|.
T Consensus 148 s~D~~~l~~~L~~Lk~G~~~v~~P~Yd~~~~d~~~~~~~~v~~~dIvIVEGi~~L~~~~~~~~~~l~d~~D~~IfVda~~ 227 (311)
T PRK05439 148 SYDMRALLRFLSDVKSGKPNVTAPVYSHLIYDIVPGEKQTVDQPDILIVEGLNVLQTGQNHHRLFVSDFFDFSIYVDADE 227 (311)
T ss_pred cccHHHHHHHHHHHHcCCCeEEeeeEEeecCCcCCCceEEeCCCCEEEEcCchhccCcccccchhhHHhCCEEEEEECCH
Confidence 9999999999999987664 788888888777764333445678999999999886664 4788899999999999999
Q ss_pred HHHHHHHhhcccc----------------cCCchH----HHHHHHHhcCCchh-HHhhhcccCccEEeecC
Q 021362 262 DTAMQRVLKRHIS----------------TGKPPD----VAKWRIEYNDRPNA-ELIMKSKKNADLVIKSI 311 (313)
Q Consensus 262 ~~~~~rv~griv~----------------~G~~~e----v~~~~~~~~~~~~~-~~i~~~~~~ad~ii~~~ 311 (313)
+.+.+|.+.|.+. .|-+.+ .+.+.|..++.||. +||.|++..||+|++.-
T Consensus 228 ~~~~~w~i~R~~~lr~~~~rdp~s~~~~~~~~s~~~a~~~a~~~w~~~~~pn~~~~I~Ptk~~ADlIi~~~ 298 (311)
T PRK05439 228 DLIEKWYIERFLKLRETAFSDPDSYFHRYAKLSEEEAIAIARQIWDEINLPNLEENILPTRERADLILHKG 298 (311)
T ss_pred HHHHHHHHHHHHHHHHhhhcCcchhhhhhccCCHHHHHHHHHHHHHhcchhhHHHhccCCCcCCCEEEeCC
Confidence 9887754432221 233222 45667889999999 59999999999999753
|
|
| >KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.68 E-value=6.1e-17 Score=154.79 Aligned_cols=178 Identities=13% Similarity=0.061 Sum_probs=134.5
Q ss_pred ccEEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCCCCeEEE
Q 021362 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATV 154 (313)
Q Consensus 75 m~~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~~~~i~~ 154 (313)
-|.+++..|++.|.... ...+.++++.++.-..++++|+||+||||++|++.|-+. |.+|.+.+.+ +.+++|
T Consensus 360 ~p~l~i~~V~f~y~p~~--y~~~~~~~~d~e~~sRi~~vg~ng~gkst~lKi~~~~l~---~~rgi~~~~~---r~ri~~ 431 (582)
T KOG0062|consen 360 PPNLRISYVAFEYTPSE--YQWRKQLGLDRESDSRISRVGENGDGKSTLLKILKGDLT---PTRGIVGRHP---RLRIKY 431 (582)
T ss_pred CCeeEEEeeeccCCCcc--hhhhhccCCccchhhhhheeccCchhHHHHHHHHhccCC---cccceeeecc---cceecc
Confidence 35899999999997532 248999999999999999999999999999999999888 9999887764 456888
Q ss_pred EecCCCCCCcccCCcccChHHHHHhcCCCCCccHHHHHHHHHHhhcC---CCccCCCCCCcCCCcchhhhhhccCceEEE
Q 021362 155 LPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ---GSVYAPSFDHGVGDPVEDDILVGLQHKVVI 231 (313)
Q Consensus 155 v~qd~~~~~~~~ltv~e~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~---~~~~~~~LSgG~kqRv~ia~al~~~ar~Li 231 (313)
.+|.-. .. +....+....+.. -.|.. ..+.+++.|..+|.. ....+..||||||-||++|.....+|-+|+
T Consensus 432 f~Qhhv--d~--l~~~v~~vd~~~~-~~pG~-~~ee~r~hl~~~Gl~g~la~~si~~LSGGQKsrvafA~~~~~~PhlLV 505 (582)
T KOG0062|consen 432 FAQHHV--DF--LDKNVNAVDFMEK-SFPGK-TEEEIRRHLGSFGLSGELALQSIASLSGGQKSRVAFAACTWNNPHLLV 505 (582)
T ss_pred hhHhhh--hH--HHHHhHHHHHHHH-hCCCC-CHHHHHHHHHhcCCCchhhhccccccCCcchhHHHHHHHhcCCCcEEE
Confidence 888632 21 2222222111111 11222 456788889999843 333567899999999999999999999999
Q ss_pred EcCCccccChh----hHHHHHhhccceEEEEcChHHHHH
Q 021362 232 VDGNYLFLDGG----VWKDVSSMFDEKWFIEVDLDTAMQ 266 (313)
Q Consensus 232 ~d~~~lllDE~----~~~~l~~l~~~~i~vtHd~~~~~~ 266 (313)
+|+|+.-||-+ +.+.|+.+...+|+||||.+++..
T Consensus 506 LDEPTNhLD~dsl~AL~~Al~~F~GGVv~VSHd~~fi~~ 544 (582)
T KOG0062|consen 506 LDEPTNHLDRDSLGALAKALKNFNGGVVLVSHDEEFISS 544 (582)
T ss_pred ecCCCccccHHHHHHHHHHHHhcCCcEEEEECcHHHHhh
Confidence 99999999974 344444444556899999999987
|
|
| >PRK05480 uridine/cytidine kinase; Provisional | Back alignment and domain information |
|---|
Probab=99.68 E-value=1.2e-15 Score=134.28 Aligned_cols=183 Identities=26% Similarity=0.381 Sum_probs=128.2
Q ss_pred CCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCCCCeEEEEecCCCCCCcccCCcccChHHHHHhcCCCC
Q 021362 105 NVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPW 184 (313)
Q Consensus 105 ~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~~~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~~ 184 (313)
.++.+++|.|+||||||||++.|++.+. ...+.++++|+++.....++..+.. ...++.+.
T Consensus 4 ~~~~iI~I~G~sGsGKTTl~~~l~~~l~----------------~~~~~~i~~D~~~~~~~~~~~~~~~---~~~~~~~~ 64 (209)
T PRK05480 4 KKPIIIGIAGGSGSGKTTVASTIYEELG----------------DESIAVIPQDSYYKDQSHLSFEERV---KTNYDHPD 64 (209)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhC----------------CCceEEEeCCccccCcccCCHHHhc---ccCccCcc
Confidence 4788999999999999999999999883 1247789999876543222222211 11234556
Q ss_pred CccHHHHHHHHHHhhcCCCccCCCCCCcCCCcchhhhhhccCceEEEEcCCccccChhhHHHHHhhccceEEEEcChHHH
Q 021362 185 TFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEKWFIEVDLDTA 264 (313)
Q Consensus 185 ~~~~~~~~~~l~~l~~~~~~~~~~LSgG~kqRv~ia~al~~~ar~Li~d~~~lllDE~~~~~l~~l~~~~i~vtHd~~~~ 264 (313)
..+.+.+.+.|..+..+.....+.++.....+..- ........+++.|+.+++.++ .+.++++..|+|+-+.+..
T Consensus 65 ~~~~~~l~~~l~~l~~~~~v~~p~~d~~~~~~~~~-~~~~~~~~~vivEg~~l~~~~----~~~~~~d~~I~v~~~~~~~ 139 (209)
T PRK05480 65 AFDHDLLIEHLKALKAGKAIEIPVYDYTEHTRSKE-TIRVEPKDVIILEGILLLEDE----RLRDLMDIKIFVDTPLDIR 139 (209)
T ss_pred cccHHHHHHHHHHHHcCCccccCcccccccccCCC-eEEeCCCCEEEEEeehhcCch----hHhhhhceeEEEeCChhHH
Confidence 66777888888888755555555443322222211 011244678999999988763 5667788899999999999
Q ss_pred HHHHhhccc-ccCCchHHHHHHHHhcCCchhH-HhhhcccCccEEeecC
Q 021362 265 MQRVLKRHI-STGKPPDVAKWRIEYNDRPNAE-LIMKSKKNADLVIKSI 311 (313)
Q Consensus 265 ~~rv~griv-~~G~~~ev~~~~~~~~~~~~~~-~i~~~~~~ad~ii~~~ 311 (313)
..|++.|.+ ..|...+-+.++|.....|..+ ++.+.+..||+||++.
T Consensus 140 ~~R~~~Rd~~~rg~~~e~~~~~~~~~~~~~~~~~i~~~~~~AD~vI~~~ 188 (209)
T PRK05480 140 LIRRLKRDVNERGRSLESVINQYLSTVRPMHLQFIEPSKRYADIIIPEG 188 (209)
T ss_pred HHHHHhhcchhcCCCHHHHHHHHHHhhhhhHHhhccHhhcceeEEecCC
Confidence 888876655 4577766666788888888776 8999999999999853
|
|
| >PLN02318 phosphoribulokinase/uridine kinase | Back alignment and domain information |
|---|
Probab=99.67 E-value=3.9e-16 Score=153.44 Aligned_cols=173 Identities=23% Similarity=0.329 Sum_probs=125.4
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCCCCeEEEEecCCCCCCcccCCcccChHHHHHhcCCCCC
Q 021362 106 VKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWT 185 (313)
Q Consensus 106 ~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~~~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~~~ 185 (313)
.--+|||.||||||||||++.|++++ |.. +.+.+|+|+.... . + ...+..+..
T Consensus 64 ~riIIGIaGpSGSGKTTLAk~LaglL----p~v--------------gvIsmDdy~~~~~---~---i---~~nfD~P~a 116 (656)
T PLN02318 64 GIILVGVAGPSGAGKTVFTEKVLNFM----PSI--------------AVISMDNYNDSSR---I---I---DGNFDDPRL 116 (656)
T ss_pred CeEEEEEECCCCCcHHHHHHHHHhhC----CCc--------------EEEEEcceecchh---h---h---CccCCChhh
Confidence 34699999999999999999999987 443 4455555431110 0 0 011223444
Q ss_pred ccHHHHHHHHHHhhcCCCccCCCCCCcCCCcchhhhhhccCceEEEEcCCccccChhhHHHHHhhccceEEEEcChHHHH
Q 021362 186 FNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEKWFIEVDLDTAM 265 (313)
Q Consensus 186 ~~~~~~~~~l~~l~~~~~~~~~~LSgG~kqRv~ia~al~~~ar~Li~d~~~lllDE~~~~~l~~l~~~~i~vtHd~~~~~ 265 (313)
.+...+.+.|+.+..+....+|.|+.-...|..-.......++++|+|+.+++. +.++++++..|||+.|.+..+
T Consensus 117 ~D~d~L~enL~~Lr~GksV~iPiYDf~t~~r~~~~~i~v~p~~VVIVEGIyaL~-----~~Lr~LlDlkIFVDtdvDirL 191 (656)
T PLN02318 117 TDYDTLLDNIHDLKAGKSVQVPIYDFKSSSRVGYRTLEVPSSRIVIIEGIYALS-----EKLRPLLDLRVSVTGGVHFDL 191 (656)
T ss_pred cchhHHHHHHHHHhCCCceecCccccccCcccCCceeecCCCcEEEEechhhcc-----HhHHhhCCEEEEEcCCccHHH
Confidence 555667777888877777777877776666653222334568999999999975 478899999999997777766
Q ss_pred H-HHhhcccccCCchHHHHHHHHhcCCchhH-HhhhcccCccEEeec
Q 021362 266 Q-RVLKRHISTGKPPDVAKWRIEYNDRPNAE-LIMKSKKNADLVIKS 310 (313)
Q Consensus 266 ~-rv~griv~~G~~~ev~~~~~~~~~~~~~~-~i~~~~~~ad~ii~~ 310 (313)
. |+..++.+.|...+-+..+|...+.|+++ ||.|+++.||+||.+
T Consensus 192 ~RRI~RD~~eRGrs~EsVi~q~~~~VkP~y~~FIeP~kk~ADIII~n 238 (656)
T PLN02318 192 VKRVLRDIQRAGQEPEEIIHQISETVYPMYKAFIEPDLQTAHIKIVN 238 (656)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHhhcchHHHHhCcchhcceEEEec
Confidence 6 55566667787766666778889999998 999999999999965
|
|
| >KOG0064 consensus Peroxisomal long-chain acyl-CoA transporter, ABC superfamily [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.66 E-value=6.4e-17 Score=154.89 Aligned_cols=167 Identities=13% Similarity=-0.001 Sum_probs=118.3
Q ss_pred EEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCCCCeEEEEe
Q 021362 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLP 156 (313)
Q Consensus 77 ~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~~~~i~~v~ 156 (313)
-|.++|+-..-.... + ++..++|.|++|--+.|.||||||||.|+|+|.|+.+ -..|...+ +++.++.|+|
T Consensus 481 gI~lenIpvItP~~~--v-vv~~Ltf~i~~G~hLLItGPNGCGKSSLfRILggLWP---vy~g~L~~---P~~~~mFYIP 551 (728)
T KOG0064|consen 481 GIILENIPVITPAGD--V-LVPKLTFQIEPGMHLLITGPNGCGKSSLFRILGGLWP---VYNGLLSI---PRPNNIFYIP 551 (728)
T ss_pred ceEEecCceeccCcc--e-eecceeEEecCCceEEEECCCCccHHHHHHHHhccCc---ccCCeeec---CCCcceEecc
Confidence 377888877775532 1 7799999999999999999999999999999999985 45555544 3556799999
Q ss_pred cCCCCCCcccCCcccChHHHH-----HhcCCCCCccHHHHHHHHHHhhc--------C--CCccCC-CCCCcCCCcchhh
Q 021362 157 MDGFHLYLSQLDAMEDPKEAH-----ARRGAPWTFNPLLLLNCLKNLRN--------Q--GSVYAP-SFDHGVGDPVEDD 220 (313)
Q Consensus 157 qd~~~~~~~~ltv~e~~~~~~-----~~~~~~~~~~~~~~~~~l~~l~~--------~--~~~~~~-~LSgG~kqRv~ia 220 (313)
|-||.-. -|.+|.+-++- ..+|.. .+.+..+|+.+.+ + .-.... .||||+|||+++
T Consensus 552 QRPYms~---gtlRDQIIYPdS~e~~~~kg~~----d~dL~~iL~~v~L~~i~qr~~g~da~~dWkd~LsgGekQR~~m- 623 (728)
T KOG0064|consen 552 QRPYMSG---GTLRDQIIYPDSSEQMKRKGYT----DQDLEAILDIVHLEHILQREGGWDAVRDWKDVLSGGEKQRMGM- 623 (728)
T ss_pred CCCccCc---CcccceeecCCcHHHHHhcCCC----HHHHHHHHHHhhHHHHHHhccChhhhccHHhhccchHHHHHHH-
Confidence 9987542 36777776642 223332 2333444444431 1 112233 899999999999
Q ss_pred hhhccCceEEEEcCCccccCh-------hhHHHHHhhcc----ceEEEEcChHHHHH
Q 021362 221 ILVGLQHKVVIVDGNYLFLDG-------GVWKDVSSMFD----EKWFIEVDLDTAMQ 266 (313)
Q Consensus 221 ~al~~~ar~Li~d~~~lllDE-------~~~~~l~~l~~----~~i~vtHd~~~~~~ 266 (313)
||...+.|++.+||| ++-..|-+..+ .-+-|||.+..-..
T Consensus 624 ------ARm~yHrPkyalLDEcTsAvsidvE~~i~~~ak~~gi~llsithrpslwk~ 674 (728)
T KOG0064|consen 624 ------ARMFYHRPKYALLDECTSAVSIDVEGKIFQAAKDAGISLLSITHRPSLWKY 674 (728)
T ss_pred ------HHHHhcCcchhhhhhhhcccccchHHHHHHHHHhcCceEEEeecCccHHHH
Confidence 888999999999999 33344444433 23588999988877
|
|
| >COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.63 E-value=4e-16 Score=145.96 Aligned_cols=160 Identities=16% Similarity=0.127 Sum_probs=114.3
Q ss_pred ccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccC-----CCCceeecCCCCCCCeEEEEecCCCCCCcccCCc
Q 021362 95 LPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIW-----PQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDA 169 (313)
Q Consensus 95 ~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~-----p~~G~i~~~g~~~~~~i~~v~qd~~~~~~~~ltv 169 (313)
.+|+|+||+|++|++++|+|+||||||||+++|+|.....+ |++|.|.+--.. ..+.+|-... +.++
T Consensus 397 yvlr~vNL~ikpGdvvaVvGqSGaGKttllRmi~G~~~~~~ee~y~p~sg~v~vp~nt---~~a~iPge~E----p~f~- 468 (593)
T COG2401 397 YVLRNLNLEIKPGDVVAVVGQSGAGKTTLLRMILGAQKGRGEEKYRPDSGKVEVPKNT---VSALIPGEYE----PEFG- 468 (593)
T ss_pred eeeeceeeEecCCCeEEEEecCCCCcchHHHHHHHHhhcccccccCCCCCceeccccc---hhhccCcccc----cccC-
Confidence 48999999999999999999999999999999999864221 788887653211 1223333211 1122
Q ss_pred ccChHHHHHhcCCCCCccHHHHHHHHHHhhcCC----CccCCCCCCcCCCcchhhhhhccCceEEEEcCCccccCh----
Q 021362 170 MEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQG----SVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDG---- 241 (313)
Q Consensus 170 ~e~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~----~~~~~~LSgG~kqRv~ia~al~~~ar~Li~d~~~lllDE---- 241 (313)
.+++..-. + ...-|...+.++|.+.|... ..+..+||-|||.|+.||.+++..|.+++.|+--..|||
T Consensus 469 ~~tilehl--~--s~tGD~~~AveILnraGlsDAvlyRr~f~ELStGQKeR~KLAkllaerpn~~~iDEF~AhLD~~TA~ 544 (593)
T COG2401 469 EVTILEHL--R--SKTGDLNAAVEILNRAGLSDAVLYRRKFSELSTGQKERAKLAKLLAERPNVLLIDEFAAHLDELTAV 544 (593)
T ss_pred chhHHHHH--h--hccCchhHHHHHHHhhccchhhhhhccHhhcCcchHHHHHHHHHHhcCCCcEEhhhhhhhcCHHHHH
Confidence 22222111 1 12335566788899888432 335669999999999999999999999999999999999
Q ss_pred hhHHHHHhhccc----eEEEEcChHHHHH
Q 021362 242 GVWKDVSSMFDE----KWFIEVDLDTAMQ 266 (313)
Q Consensus 242 ~~~~~l~~l~~~----~i~vtHd~~~~~~ 266 (313)
.+...|.++..+ .+.+||..+....
T Consensus 545 rVArkiselaRe~giTlivvThrpEv~~A 573 (593)
T COG2401 545 RVARKISELAREAGITLIVVTHRPEVGNA 573 (593)
T ss_pred HHHHHHHHHHHHhCCeEEEEecCHHHHhc
Confidence 566666666643 3699999988755
|
|
| >KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.61 E-value=3e-15 Score=156.52 Aligned_cols=188 Identities=14% Similarity=0.111 Sum_probs=142.5
Q ss_pred cccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCC-----CCeEEEEecCCCCCCcccCC
Q 021362 94 LLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP-----PDVATVLPMDGFHLYLSQLD 168 (313)
Q Consensus 94 ~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~-----~~~i~~v~qd~~~~~~~~lt 168 (313)
+.+|+|+++-+++|+.+.++||.|||||||++.++|-+....-..|+|.++|.+. ++.++|++|++.+++. ||
T Consensus 128 ~~il~~~sg~~~pg~m~lvLG~pgsG~ttllkal~g~~~~~~~~~~~isy~G~~~~e~~~~~~~aY~~e~DvH~p~--lT 205 (1391)
T KOG0065|consen 128 IQILKDISGIIKPGEMTLVLGPPGSGKTTLLKALAGKLDNFLKSSGEITYNGHDLKEFVPKKTVAYNSEQDVHFPE--LT 205 (1391)
T ss_pred ceeecCcceeEcCCceEEEecCCCCchHHHHHHHhCCCcccccCCCceeECCCcccccccCceEEeccccccccce--eE
Confidence 4499999999999999999999999999999999999864444567999999762 3568999999888775 99
Q ss_pred cccChHHHHHhcCCCCC----ccHH----HHHHHHHHhhcC-------CCccCCCCCCcCCCcchhhhhhccCceEEEEc
Q 021362 169 AMEDPKEAHARRGAPWT----FNPL----LLLNCLKNLRNQ-------GSVYAPSFDHGVGDPVEDDILVGLQHKVVIVD 233 (313)
Q Consensus 169 v~e~~~~~~~~~~~~~~----~~~~----~~~~~l~~l~~~-------~~~~~~~LSgG~kqRv~ia~al~~~ar~Li~d 233 (313)
|+|-+.+.++.++.... ...+ ..+.+++.+|+. .+.-.+-.|||||+||.++.+++.+++++..|
T Consensus 206 VreTldFa~rck~~~~r~~~~~R~e~~~~~~d~~lkilGL~~~~dT~VGnd~~RGvSGGerKRvsi~E~~v~~~~~~~~D 285 (1391)
T KOG0065|consen 206 VRETLDFAARCKGPGSRYDEVSRREKLAAMTDYLLKILGLDHCADTLVGNDMVRGVSGGERKRVSIGEMLVGPASILFWD 285 (1391)
T ss_pred EeehhhHHHhccCCccccccccHHHHHHHHHHHHHHHhCchhhccceecccccccccCcccceeeeeeeeecCcceeeee
Confidence 99999999877654211 1122 234677777732 34466699999999999999999999999999
Q ss_pred CCccccCh----hhHHHHHhhccc---eEEEE-c-ChHHHHH---HHh----hcccccCCchHHHH
Q 021362 234 GNYLFLDG----GVWKDVSSMFDE---KWFIE-V-DLDTAMQ---RVL----KRHISTGKPPDVAK 283 (313)
Q Consensus 234 ~~~lllDE----~~~~~l~~l~~~---~i~vt-H-d~~~~~~---rv~----griv~~G~~~ev~~ 283 (313)
+..-.||. ++.+.|+.+.+. ..+|+ + -.+++.. .|+ |+++..|+.++++.
T Consensus 286 e~t~GLDSsTal~iik~lr~~a~~~~~t~~vsi~Q~s~~~~~lFD~v~lL~eG~~iy~Gp~d~~~~ 351 (1391)
T KOG0065|consen 286 EITRGLDSSTAFQIIKALRQLAHITGATALVSILQPSPEIYDLFDDVILLSEGYQIYQGPRDEVLP 351 (1391)
T ss_pred cccccccHHHHHHHHHHHHHHHhhhcceEEEEeccCChHHHHhhhheeeeeccceEEeccHHHHHH
Confidence 99999998 556666665543 33333 2 2223322 443 99999999888764
|
|
| >COG1072 CoaA Panthothenate kinase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.1e-14 Score=130.56 Aligned_cols=187 Identities=28% Similarity=0.421 Sum_probs=156.2
Q ss_pred cCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCCCCeEEEEecCCCCCCcccCCcccChHHHHHhcCCC
Q 021362 104 VNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAP 183 (313)
Q Consensus 104 i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~~~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~ 183 (313)
-+..-|+||.|+.|+||||+.+.+.-++. .||.+ ..+..+++|+|++++..+. .++ .+.++|.|
T Consensus 79 ~~~pfIIgiaGsvavGKST~ar~L~~ll~-~~~~~-----------~~v~lvpmDGFhy~n~~L~-~~g---lm~rKGfP 142 (283)
T COG1072 79 QQRPFIIGIAGSVAVGKSTTARILQALLS-RWPES-----------PKVDLVTMDGFHYPNAVLD-ERG---LMARKGFP 142 (283)
T ss_pred CCCCEEEEeccCccccHHHHHHHHHHHHh-hCCCC-----------CceEEEeccccccCHhHhh-hcc---ccccCCCC
Confidence 34567999999999999999999999996 23432 2478899999998864433 111 23568999
Q ss_pred CCccHHHHHHHHHHhh-cCCCccCCCCCCcCCCcchhhhhhccCceEEEEcCCccccChhhHHHHHhhccceEEEEcChH
Q 021362 184 WTFNPLLLLNCLKNLR-NQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEKWFIEVDLD 262 (313)
Q Consensus 184 ~~~~~~~~~~~l~~l~-~~~~~~~~~LSgG~kqRv~ia~al~~~ar~Li~d~~~lllDE~~~~~l~~l~~~~i~vtHd~~ 262 (313)
+++|...+.+.+..+. ...+..+|.||+-....+.-+..+..++++||+|+..+|+|+.-|-.+.+.++-.|+|+-|.+
T Consensus 143 eSyD~~~ll~fl~~vK~~~~~v~aPvysh~~yD~vpd~~~v~~~pdIlI~EG~nvLq~~~p~~~~sdffDfSIyvDa~~~ 222 (283)
T COG1072 143 ESYDVAALLRFLSDVKAGKPDVFAPVYSHLIYDPVPDAFQVVPQPDILIVEGNNVLQDGEPWLFLSDFFDFSIYVDADEE 222 (283)
T ss_pred ccccHHHHHHHHHHHhcCCCccccccccccccccCCCceeecCCCCEEEEechhhhcCCCccccccccceEEEEecCCHH
Confidence 9999999999999998 555689999999999999889999999999999999999999989899999999999999999
Q ss_pred HHHHHHhhcccccCCchHHHHHHHHhcCCchhHHhhhcccCccE
Q 021362 263 TAMQRVLKRHISTGKPPDVAKWRIEYNDRPNAELIMKSKKNADL 306 (313)
Q Consensus 263 ~~~~rv~griv~~G~~~ev~~~~~~~~~~~~~~~i~~~~~~ad~ 306 (313)
.+.+|.+.|....|.........+..++.++.+........++.
T Consensus 223 ~le~wyi~Rfl~~g~~a~~~~~~~~~~~~~~~~~~a~~~a~~~w 266 (283)
T COG1072 223 LLEERYIERFLKFGLTAFEDPASYFHNYAPLSEREAIESARAIW 266 (283)
T ss_pred HHHHHHHHHHHhcccchhhChhhHhhccCcchHHHHHHhhhhcc
Confidence 99999999999989888888888888999998855554444433
|
|
| >PLN02348 phosphoribulokinase | Back alignment and domain information |
|---|
Probab=99.57 E-value=5e-14 Score=133.27 Aligned_cols=193 Identities=21% Similarity=0.264 Sum_probs=132.0
Q ss_pred CCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCC-----CCCCeEEEEecCCCCCCcccCCcccChHHHHHh
Q 021362 105 NVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQV-----KPPDVATVLPMDGFHLYLSQLDAMEDPKEAHAR 179 (313)
Q Consensus 105 ~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~-----~~~~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~ 179 (313)
++.-++||.|++|||||||++.|...+.. .+.-..+|. .....+.++++|+|+.++. ..+... .. .
T Consensus 47 ~~p~IIGIaG~SGSGKSTfA~~L~~~Lg~----~~~~~~~~~~~~~~l~~~~~~VI~lDDYh~~dr--~~r~~~--g~-t 117 (395)
T PLN02348 47 DGTVVIGLAADSGCGKSTFMRRLTSVFGG----AAKPPKGGNPDSNTLISDTTTVICLDDYHSLDR--TGRKEK--GV-T 117 (395)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHhh----ccCCCccccccccccccCceEEEEcccccCCCh--hhHhhc--CC-c
Confidence 34469999999999999999999999851 111001111 1224567899998876532 111100 00 0
Q ss_pred cCCCCCccHHHHHHHHHHhhcCCCccCCCCCCcCCCcchhhhhhccCceEEEEcCCccccChhhHHHHHhhccceEEEEc
Q 021362 180 RGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEKWFIEV 259 (313)
Q Consensus 180 ~~~~~~~~~~~~~~~l~~l~~~~~~~~~~LSgG~kqRv~ia~al~~~ar~Li~d~~~lllDE~~~~~l~~l~~~~i~vtH 259 (313)
.-.|...+.+.+.+.++.|..+.....|.|+.-...+..- -.+.+++++|.|+-+.+.|+ .++++++..|+|+.
T Consensus 118 ~ldP~a~dfDll~~~L~~Lk~G~~I~~PiYDh~tg~~~~~--e~I~p~~VVIVEGlh~L~~e----~lr~l~D~~IyVd~ 191 (395)
T PLN02348 118 ALDPRANNFDLMYEQVKALKEGKAVEKPIYNHVTGLLDPP--ELIEPPKILVIEGLHPMYDE----RVRDLLDFSIYLDI 191 (395)
T ss_pred cCCcccccHHHHHHHHHHHHCCCcEEeeccccCCCCcCCc--EEcCCCcEEEEechhhccCc----cccccCcEEEEEEC
Confidence 0123455666788888888877667777666554433321 13456899999999999985 66778889999999
Q ss_pred ChHHHHHHHhhcccc-cCCchHHHHHHHHhcCCchhHHhhhcccCccEEeecCC
Q 021362 260 DLDTAMQRVLKRHIS-TGKPPDVAKWRIEYNDRPNAELIMKSKKNADLVIKSID 312 (313)
Q Consensus 260 d~~~~~~rv~griv~-~G~~~ev~~~~~~~~~~~~~~~i~~~~~~ad~ii~~~~ 312 (313)
+.+..+.|.+.|.++ +|...+-+.+++..+......||.|.+..||+||+-.+
T Consensus 192 ~~dvrl~RRI~RD~~eRG~S~EeV~~~i~ar~pd~~~yI~pqk~~ADiVI~v~p 245 (395)
T PLN02348 192 SDDVKFAWKIQRDMAERGHSLESIKASIEARKPDFDAYIDPQKQYADVVIEVLP 245 (395)
T ss_pred CHHHHHHHHHHhhHhhcCCCHHHHHHHHHhcCcchhhhcccccccCCEEEEecC
Confidence 999988877777775 78777767777876544445599999999999997553
|
|
| >COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.56 E-value=1.5e-15 Score=143.56 Aligned_cols=170 Identities=16% Similarity=0.063 Sum_probs=107.3
Q ss_pred cceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeec-----------CCCCCC-
Q 021362 82 CMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFD-----------SQVKPP- 149 (313)
Q Consensus 82 ~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~-----------~g~~~~- 149 (313)
++..+||... . .|..+- ...+|.++||+||||-||||.+|+|+|.+. |.=|...- .|....
T Consensus 79 e~vHRYg~Ng--F-kL~~LP-~pr~G~V~GilG~NGiGKsTalkILaGel~---PNLG~~~~pp~wdeVi~~FrGtELq~ 151 (591)
T COG1245 79 EVVHRYGVNG--F-KLYRLP-TPRPGKVVGILGPNGIGKSTALKILAGELK---PNLGRYEDPPSWDEVIKRFRGTELQN 151 (591)
T ss_pred cceeeccCCc--e-EEecCC-CCCCCcEEEEEcCCCccHHHHHHHHhCccc---cCCCCCCCCCCHHHHHHHhhhhHHHH
Confidence 3567776532 0 222221 356899999999999999999999999998 88765321 111100
Q ss_pred -------Ce--EEEEecCCCCCCcccCCcccChHHHHHhcCCCCCccHHHHHHHHHHhh--cCCCccCCCCCCcCCCcch
Q 021362 150 -------DV--ATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLR--NQGSVYAPSFDHGVGDPVE 218 (313)
Q Consensus 150 -------~~--i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~~~~~~~~~~~~l~~l~--~~~~~~~~~LSgG~kqRv~ 218 (313)
.. +..-+|--...+. -+...+...+.. ....-...++.++++ .-.++.+.+||||+.||++
T Consensus 152 YF~~l~~g~~r~v~K~QYVd~iPk---~~KG~v~elLk~-----~de~g~~devve~l~L~nvl~r~v~~LSGGELQr~a 223 (591)
T COG1245 152 YFKKLYEGELRAVHKPQYVDLIPK---VVKGKVGELLKK-----VDERGKFDEVVERLGLENVLDRDVSELSGGELQRVA 223 (591)
T ss_pred HHHHHHcCCcceecchHHHHHHHH---HhcchHHHHHHh-----hhhcCcHHHHHHHhcchhhhhhhhhhcCchHHHHHH
Confidence 00 1101110000000 000011111000 001123456666666 3467889999999999999
Q ss_pred hhhhhccCceEEEEcCCccccCh----hhHHHHHhhcc---ceEEEEcChHHHHH
Q 021362 219 DDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFD---EKWFIEVDLDTAMQ 266 (313)
Q Consensus 219 ia~al~~~ar~Li~d~~~lllDE----~~~~~l~~l~~---~~i~vtHd~~~~~~ 266 (313)
||.+++++|.+.++|++..-||- ...+.|+++.. .+++|.||+.....
T Consensus 224 Iaa~l~rdADvY~FDEpsSyLDi~qRl~~ar~Irel~~~~k~ViVVEHDLavLD~ 278 (591)
T COG1245 224 IAAALLRDADVYFFDEPSSYLDIRQRLNAARVIRELAEDGKYVIVVEHDLAVLDY 278 (591)
T ss_pred HHHHHhccCCEEEEcCCcccccHHHHHHHHHHHHHHhccCCeEEEEechHHHHHH
Confidence 99999999999999999999998 56667777765 35799999988765
|
|
| >cd02029 PRK_like Phosphoribulokinase-like (PRK-like) is a family of proteins similar to phosphoribulokinase (PRK), the enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes | Back alignment and domain information |
|---|
Probab=99.56 E-value=1.4e-13 Score=124.11 Aligned_cols=184 Identities=16% Similarity=0.113 Sum_probs=131.5
Q ss_pred EEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCCCCeEEEEecCCCCCCcccCCcccChHHHH---HhcCC--C
Q 021362 109 IVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAH---ARRGA--P 183 (313)
Q Consensus 109 iv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~~~~i~~v~qd~~~~~~~~ltv~e~~~~~~---~~~~~--~ 183 (313)
++||.|++||||||+.+.|...+. . . ...+.++.+|.|+.+. ...-.+...... ..+.. |
T Consensus 1 IIgItG~SGSGKTTv~~~l~~~l~---~-~----------g~~v~vI~~D~yyr~~-r~~~~~~~~~a~~~~~nfdHf~P 65 (277)
T cd02029 1 VIAVTGSSGAGTTTVKRAFEHIFA---R-E----------GIHPAVVEGDSFHRYE-RMEMKMAIAEALDAGRNFSHFGP 65 (277)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHH---h-c----------CCceEEEeccccccCC-chhHHHHHHHHhhcCCCCCCCCc
Confidence 589999999999999999998885 1 1 1246789999887643 222222211111 12334 7
Q ss_pred CCccHHHHHHHHHHhhcCCCccCCCCCC------------cCCCcchhhhhhccCceEEEEcCCccccChhhHHHHHhhc
Q 021362 184 WTFNPLLLLNCLKNLRNQGSVYAPSFDH------------GVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMF 251 (313)
Q Consensus 184 ~~~~~~~~~~~l~~l~~~~~~~~~~LSg------------G~kqRv~ia~al~~~ar~Li~d~~~lllDE~~~~~l~~l~ 251 (313)
.+.+.+.+.+.++.++.+.....+.|.+ |....-. .+..++.+|+.|+-+.++. --...+++++
T Consensus 66 eAnd~dlL~~~l~~L~~g~~i~~p~Y~h~~~~~~~~~~~~gtft~~~---~~~~p~dvIivEGLhg~~~-~~~~~lr~~~ 141 (277)
T cd02029 66 EANLFDLLEELFRTYGETGRGRSRYYLHSDEEAAPFNQEPGTFTPWE---DLPEDTDLLFYEGLHGGVV-TEGYNVAQHA 141 (277)
T ss_pred ccccHHHHHHHHHHHHcCCCcccceeeccccccccccCCCCccCCcc---cccCCCcEEEECCCCcccc-cccHHHHHhC
Confidence 7888899999999998776666666643 4332111 1235699999999874332 0125788999
Q ss_pred cceEEEEcChHHHHHHHhhccc-ccCCchHHHHHHHHhcCCchhH-HhhhcccCccEEeecCC
Q 021362 252 DEKWFIEVDLDTAMQRVLKRHI-STGKPPDVAKWRIEYNDRPNAE-LIMKSKKNADLVIKSID 312 (313)
Q Consensus 252 ~~~i~vtHd~~~~~~rv~griv-~~G~~~ev~~~~~~~~~~~~~~-~i~~~~~~ad~ii~~~~ 312 (313)
+-.|+|+-+.++...|.+-|.+ ++|...|-+.++|..+. |++. ||.|++..||+++..++
T Consensus 142 DlkIfVd~~~dlr~irRI~RD~~ERGrs~EsVi~qilrrm-pdy~~yI~PQ~~~tDI~fqr~p 203 (277)
T cd02029 142 DLLVGVVPIINLEWIQKIHRDTAERGYSAEAVMDTILRRM-PDYINYICPQFSRTDINFQRVP 203 (277)
T ss_pred CeEEEecCcHHHHHHHHHHhhhHhhCCCHHHHHHHHHHhC-chHHhhCCcccccCcEEEeccC
Confidence 9999999999988887776666 57998887777788777 8877 99999999999998765
|
PRK catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis. |
| >cd03283 ABC_MutS-like MutS-like homolog in eukaryotes | Back alignment and domain information |
|---|
Probab=99.54 E-value=1.4e-14 Score=126.88 Aligned_cols=130 Identities=9% Similarity=0.030 Sum_probs=85.1
Q ss_pred cccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCCCCeEEEEecCCCCCCcccCCcccChHH
Q 021362 96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKE 175 (313)
Q Consensus 96 ~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~~~~i~~v~qd~~~~~~~~ltv~e~~~~ 175 (313)
+++|++|+. |++++|+||||||||||+|+|+|... +...|...+.. .+++|. ..++. .+++.||+.+
T Consensus 16 v~n~i~l~~--g~~~~ltGpNg~GKSTllr~i~~~~~--------l~~~G~~v~a~-~~~~q~-~~l~~-~~~~~d~l~~ 82 (199)
T cd03283 16 VANDIDMEK--KNGILITGSNMSGKSTFLRTIGVNVI--------LAQAGAPVCAS-SFELPP-VKIFT-SIRVSDDLRD 82 (199)
T ss_pred ecceEEEcC--CcEEEEECCCCCChHHHHHHHHHHHH--------HHHcCCEEecC-ccCccc-ceEEE-eccchhcccc
Confidence 778887776 69999999999999999999999773 11223222111 245664 33332 4899999876
Q ss_pred HHHhcCCCCCccHHHHHHHHHHhhcCCCccCCCCCCcCCCcchhhhhhccCceEEEEcCCccccChhhH-----HHHHhh
Q 021362 176 AHARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVW-----KDVSSM 250 (313)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~LSgG~kqRv~ia~al~~~ar~Li~d~~~lllDE~~~-----~~l~~l 250 (313)
....+ .....++.++++.++. ..++++++|+++..+|.... ..++.+
T Consensus 83 ~~s~~----~~e~~~~~~iL~~~~~------------------------~~p~llllDEp~~glD~~~~~~l~~~ll~~l 134 (199)
T cd03283 83 GISYF----YAELRRLKEIVEKAKK------------------------GEPVLFLLDEIFKGTNSRERQAASAAVLKFL 134 (199)
T ss_pred ccChH----HHHHHHHHHHHHhccC------------------------CCCeEEEEecccCCCCHHHHHHHHHHHHHHH
Confidence 54221 1122455666666541 34899999999999998322 234444
Q ss_pred ccc---eEEEEcChHHHHH
Q 021362 251 FDE---KWFIEVDLDTAMQ 266 (313)
Q Consensus 251 ~~~---~i~vtHd~~~~~~ 266 (313)
.+. .+++||+++++..
T Consensus 135 ~~~~~tiiivTH~~~~~~~ 153 (199)
T cd03283 135 KNKNTIGIISTHDLELADL 153 (199)
T ss_pred HHCCCEEEEEcCcHHHHHh
Confidence 332 4799999998865
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid |
| >cd02026 PRK Phosphoribulokinase (PRK) is an enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes | Back alignment and domain information |
|---|
Probab=99.53 E-value=2.1e-13 Score=124.87 Aligned_cols=176 Identities=22% Similarity=0.329 Sum_probs=112.7
Q ss_pred EEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCCCCeEEEEecCCCCCCcccCCcccChHHHHHhcCCCCCccH
Q 021362 109 IVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNP 188 (313)
Q Consensus 109 iv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~~~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~~~~~~ 188 (313)
++||+|+||||||||++.|+++++ +..|. ++.+|+++... ..+....+. ..-.+...+.
T Consensus 1 iigI~G~sGsGKSTl~~~L~~ll~---~~~~~-------------vi~~Dd~~~~~----~~~r~~~g~-~~~~p~~~~~ 59 (273)
T cd02026 1 IIGVAGDSGCGKSTFLRRLTSLFG---SDLVT-------------VICLDDYHSLD----RKGRKETGI-TALDPRANNF 59 (273)
T ss_pred CEEEECCCCCCHHHHHHHHHHhhC---CCceE-------------EEECcccccCC----HHHHHHhhc-ccccccchhH
Confidence 589999999999999999999997 54332 34555443221 001000000 0001222334
Q ss_pred HHHHHHHHHhhcCCCccCCCCCCcCCCcchhhhhhccCceEEEEcCCccccChhhHHHHHhhccceEEEEcChHHHHHHH
Q 021362 189 LLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEKWFIEVDLDTAMQRV 268 (313)
Q Consensus 189 ~~~~~~l~~l~~~~~~~~~~LSgG~kqRv~ia~al~~~ar~Li~d~~~lllDE~~~~~l~~l~~~~i~vtHd~~~~~~rv 268 (313)
+.+.+.++.+..+.....|.|+.-......- ....+.++++.|+.+++.+ ..++++++..|+|+.+.+....|.
T Consensus 60 d~l~~~l~~Lk~g~~i~~P~y~~~~~~~~~~--~~i~~~~ivIvEG~~~l~~----~~l~~~~D~~I~vd~~~e~r~~r~ 133 (273)
T cd02026 60 DLMYEQLKALKEGQAIEKPIYNHVTGLIDPP--ELIKPTKIVVIEGLHPLYD----ERVRELLDFSVYLDISDEVKFAWK 133 (273)
T ss_pred HHHHHHHHHHHCCCCcccccccccCCCcCCc--EEcCCCCEEEEeeehhhCc----hhhhhhccEEEEEECChhHHHHHH
Confidence 4455666666655555555555433322110 1123468999999998887 367778899999999999888777
Q ss_pred hhcccc-cCCchHHHHHHHHhcCCchhH-HhhhcccCccEEeecCC
Q 021362 269 LKRHIS-TGKPPDVAKWRIEYNDRPNAE-LIMKSKKNADLVIKSID 312 (313)
Q Consensus 269 ~griv~-~G~~~ev~~~~~~~~~~~~~~-~i~~~~~~ad~ii~~~~ 312 (313)
+.|.+. .|...+-+.+++... .+.++ ||.|++..||+||...+
T Consensus 134 i~Rd~~rrG~s~e~v~~~i~~r-~~~~~~~I~P~~~~ADvVI~~~p 178 (273)
T cd02026 134 IQRDMAERGHSLEDVLASIEAR-KPDFEAYIDPQKQYADVVIQVLP 178 (273)
T ss_pred HHHHHHHhCCCHHHHHHHHHhh-chhHHHHhccccccCcEEEEccC
Confidence 777775 576666666667654 55555 99999999999997653
|
This enzyme catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis. |
| >PRK07429 phosphoribulokinase; Provisional | Back alignment and domain information |
|---|
Probab=99.48 E-value=1.7e-12 Score=121.69 Aligned_cols=176 Identities=22% Similarity=0.338 Sum_probs=117.8
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCCCCeEEEEecCCCCCCcccCCcccChHHHHHhcC----
Q 021362 106 VKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRG---- 181 (313)
Q Consensus 106 ~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~~~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~---- 181 (313)
+--++||.|+||||||||++.|++++. ++. +.++.+|+++.... . .....+
T Consensus 7 ~~~IIgI~G~SGSGKSTla~~L~~ll~---~~~-------------~~vi~~Dd~~~~~~--~-------~r~~~g~~~l 61 (327)
T PRK07429 7 RPVLLGVAGDSGCGKTTFLRGLADLLG---EEL-------------VTVICTDDYHSYDR--K-------QRKELGITAL 61 (327)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHhHhc---cCc-------------eEEEEecccccCCH--H-------HHHhcCCccc
Confidence 345999999999999999999999996 543 34456665542210 0 011111
Q ss_pred CCCCccHHHHHHHHHHhhcCCCccCCCCCCcCCCcchhhhhhccCceEEEEcCCccccChhhHHHHHhhccceEEEEcCh
Q 021362 182 APWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEKWFIEVDL 261 (313)
Q Consensus 182 ~~~~~~~~~~~~~l~~l~~~~~~~~~~LSgG~kqRv~ia~al~~~ar~Li~d~~~lllDE~~~~~l~~l~~~~i~vtHd~ 261 (313)
.+...+.+.+.+.++.+..+.....|.+.........- ......++++.|+.+.+.+ +.++++++..|+++-+.
T Consensus 62 ~p~~~~~d~l~~~l~~L~~g~~I~~P~yd~~~g~~~~~--~~i~p~~iVIvEG~~~l~~----~~lr~~~D~~I~Vda~~ 135 (327)
T PRK07429 62 DPRANNLDIMYEHLKALKTGQPILKPIYNHETGTFDPP--EYIEPNKIVVVEGLHPLYD----ERVRELYDFKVYLDPPE 135 (327)
T ss_pred CccchHHHHHHHHHHHHHCCCceecceeecCCCCcCCc--EecCCCcEEEEechhhcCc----HhHHhhCCEEEEEECCH
Confidence 13344456677777777765555555443332222211 1123468999999998887 36777889999999999
Q ss_pred HHHHHHHhhcccc-cCCchHHHHHHHHhcCCchhHHhhhcccCccEEeecCC
Q 021362 262 DTAMQRVLKRHIS-TGKPPDVAKWRIEYNDRPNAELIMKSKKNADLVIKSID 312 (313)
Q Consensus 262 ~~~~~rv~griv~-~G~~~ev~~~~~~~~~~~~~~~i~~~~~~ad~ii~~~~ 312 (313)
+....|.+.|... .|...+-+..++..+......||.|++..||+||+..+
T Consensus 136 evr~~Rri~Rd~~rrG~s~eei~~~i~~r~pd~~~yI~P~k~~ADiVI~~~p 187 (327)
T PRK07429 136 EVKIAWKIKRDMAKRGHTYEQVLAEIEAREPDFEAYIRPQRQWADVVIQFLP 187 (327)
T ss_pred HHHHHHHHHHHHhhcCCCHHHHHHHHHHhCccHhhhhcccccCCCEEEEcCC
Confidence 9988877777775 57766666666765544444499999999999998765
|
|
| >PRK00635 excinuclease ABC subunit A; Provisional | Back alignment and domain information |
|---|
Probab=99.48 E-value=1e-13 Score=151.13 Aligned_cols=94 Identities=14% Similarity=0.121 Sum_probs=75.3
Q ss_pred HHHHHHHhh---cCCCccCCCCCCcCCCcchhhhhhccC---ceEEEEcCCccccCh----hhHHHHHhhccc---eEEE
Q 021362 191 LLNCLKNLR---NQGSVYAPSFDHGVGDPVEDDILVGLQ---HKVVIVDGNYLFLDG----GVWKDVSSMFDE---KWFI 257 (313)
Q Consensus 191 ~~~~l~~l~---~~~~~~~~~LSgG~kqRv~ia~al~~~---ar~Li~d~~~lllDE----~~~~~l~~l~~~---~i~v 257 (313)
..+.|..+| ....+...+|||||.||+-+|..|..+ ..++++|+|+..|+. .+++.+.++.+. .|+|
T Consensus 1679 ~L~~L~~vGLgYl~LGq~~~tLSGGE~qRikLa~~l~~~~~~~~lyilDEPt~GLh~~d~~~Ll~~l~~L~~~g~tvivi 1758 (1809)
T PRK00635 1679 PLQALIDNGLGYLPLGQNLSSLSLSEKIAIKIAKFLYLPPKHPTLFLLDEIATSLDNQQKSALLVQLRTLVSLGHSVIYI 1758 (1809)
T ss_pred HHHHHHHcCCCeeeCCCcCCccCchHHHHHHHHHHHhcCCCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCeEEEE
Confidence 345566666 345678889999999999999999865 679999999999999 455555555443 5799
Q ss_pred EcChHHHHH--HHh----------hcccccCCchHHHHH
Q 021362 258 EVDLDTAMQ--RVL----------KRHISTGKPPDVAKW 284 (313)
Q Consensus 258 tHd~~~~~~--rv~----------griv~~G~~~ev~~~ 284 (313)
+||++.+.. +++ |++++.|+|++++..
T Consensus 1759 eH~~~~i~~aD~iidlgp~gG~~GG~iva~Gtp~~i~~~ 1797 (1809)
T PRK00635 1759 DHDPALLKQADYLIEMGPGSGKTGGKILFSGPPKDISAS 1797 (1809)
T ss_pred eCCHHHHHhCCEEEEcCCCcccCCCEEEEEeCHHHHhhC
Confidence 999999998 666 799999999999763
|
|
| >cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes | Back alignment and domain information |
|---|
Probab=99.46 E-value=2.8e-14 Score=124.95 Aligned_cols=128 Identities=10% Similarity=0.030 Sum_probs=79.5
Q ss_pred cccccccccCCCc-EEEEECCCCCcHHHHHHHHH-HHhcccCCCCceeecCCCCCCCeEEEEecCCCCCCcccCCcccCh
Q 021362 96 PTSALASNVNVKH-IVGLAGPPGAGKSTLAAEVV-RRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDP 173 (313)
Q Consensus 96 ~L~~vsl~i~~Ge-iv~l~GpNGsGKSTLlk~l~-gl~~~~~p~~G~i~~~g~~~~~~i~~v~qd~~~~~~~~ltv~e~~ 173 (313)
.+-++||++.+|+ +++|.||||||||||+|+|+ +.+. +..|- +++...... ....+.+
T Consensus 16 ~~~~~~~~i~~~~~~~~ltG~Ng~GKStll~~i~~~~~~---~~~G~-------------~vp~~~~~~----~~~~~~~ 75 (200)
T cd03280 16 KVVPLDIQLGENKRVLVITGPNAGGKTVTLKTLGLLTLM---AQSGL-------------PIPAAEGSS----LPVFENI 75 (200)
T ss_pred ceEcceEEECCCceEEEEECCCCCChHHHHHHHHHHHHH---HHcCC-------------Ccccccccc----CcCccEE
Confidence 4557899999995 89999999999999999998 3332 22221 111110000 0000000
Q ss_pred HHHHHhcCCCCCccHHHHHHHHHHhh--cCCCccCCCCCCcCCCcchhhhhhccCceEEEEcCCccccChh----hH-HH
Q 021362 174 KEAHARRGAPWTFNPLLLLNCLKNLR--NQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGG----VW-KD 246 (313)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~l~~l~--~~~~~~~~~LSgG~kqRv~ia~al~~~ar~Li~d~~~lllDE~----~~-~~ 246 (313)
+..++ ........+||+||+|++.++.++ .+++++++|++...+|.. ++ ..
T Consensus 76 ---------------------~~~lg~~~~l~~~~s~fs~g~~~~~~i~~~~-~~p~llllDEp~~glD~~~~~~i~~~~ 133 (200)
T cd03280 76 ---------------------FADIGDEQSIEQSLSTFSSHMKNIARILQHA-DPDSLVLLDELGSGTDPVEGAALAIAI 133 (200)
T ss_pred ---------------------EEecCchhhhhcCcchHHHHHHHHHHHHHhC-CCCcEEEEcCCCCCCCHHHHHHHHHHH
Confidence 00011 112234568999999999998764 688999999999999983 32 23
Q ss_pred HHhhcc---ceEEEEcChHHHH
Q 021362 247 VSSMFD---EKWFIEVDLDTAM 265 (313)
Q Consensus 247 l~~l~~---~~i~vtHd~~~~~ 265 (313)
++.+.+ ..+++||+.+...
T Consensus 134 l~~l~~~~~~vi~~tH~~~l~~ 155 (200)
T cd03280 134 LEELLERGALVIATTHYGELKA 155 (200)
T ss_pred HHHHHhcCCEEEEECCHHHHHH
Confidence 444433 2479999865443
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a |
| >COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.46 E-value=1.4e-13 Score=138.00 Aligned_cols=91 Identities=19% Similarity=0.203 Sum_probs=73.4
Q ss_pred HHHHHhhc---CCCccCCCCCCcCCCcchhhhhhccCc---eEEEEcCCccccCh----hhHHHHHhhccc---eEEEEc
Q 021362 193 NCLKNLRN---QGSVYAPSFDHGVGDPVEDDILVGLQH---KVVIVDGNYLFLDG----GVWKDVSSMFDE---KWFIEV 259 (313)
Q Consensus 193 ~~l~~l~~---~~~~~~~~LSgG~kqRv~ia~al~~~a---r~Li~d~~~lllDE----~~~~~l~~l~~~---~i~vtH 259 (313)
+.|..+|+ ...+...+|||||.||+-+|.-|...+ .+.|+|+|+..|-- ++++.|.++.+. +|+|.|
T Consensus 804 qtL~dVGLgYi~LGQpatTLSGGEaQRvKLA~EL~k~~tg~TlYiLDEPTTGLH~~Di~kLl~VL~rLvd~GnTViVIEH 883 (935)
T COG0178 804 QTLVDVGLGYIKLGQPATTLSGGEAQRVKLAKELSKRSTGKTLYILDEPTTGLHFDDIKKLLEVLHRLVDKGNTVIVIEH 883 (935)
T ss_pred HHHHHcCcceEecCCccccccchHHHHHHHHHHHhhccCCCeEEEeCCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEec
Confidence 33444452 345677899999999999999998877 88999999998876 566666666654 579999
Q ss_pred ChHHHHH--HHh----------hcccccCCchHHHH
Q 021362 260 DLDTAMQ--RVL----------KRHISTGKPPDVAK 283 (313)
Q Consensus 260 d~~~~~~--rv~----------griv~~G~~~ev~~ 283 (313)
+++.+.. +++ |++++.|+|+++++
T Consensus 884 NLdVIk~AD~IIDLGPeGG~~GG~iva~GTPeeva~ 919 (935)
T COG0178 884 NLDVIKTADWIIDLGPEGGDGGGEIVASGTPEEVAK 919 (935)
T ss_pred ccceEeecCEEEEcCCCCCCCCceEEEecCHHHHHh
Confidence 9999987 777 79999999999987
|
|
| >KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.46 E-value=3.1e-13 Score=127.46 Aligned_cols=173 Identities=16% Similarity=0.057 Sum_probs=105.6
Q ss_pred EEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCCCCeEEEEec
Q 021362 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPM 157 (313)
Q Consensus 78 l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~~~~i~~v~q 157 (313)
|.++|.+.+-.++. .+.+.|+.|-.|..+||+||||-||||||+.|+..--++ |..=. +-++-|
T Consensus 265 IKiEnF~ISA~Gk~----LFvnA~L~Iv~GRRYGLVGPNG~GKTTLLkHIa~RalaI-PpnID-----------vLlCEQ 328 (807)
T KOG0066|consen 265 IKIENFDISAQGKL----LFVNASLTIVYGRRYGLVGPNGMGKTTLLKHIAARALAI-PPNID-----------VLLCEQ 328 (807)
T ss_pred ceeeeeeeecccce----eeeccceEEEecceecccCCCCCchHHHHHHHHhhhccC-CCCCc-----------eEeeee
Confidence 88889888887776 899999999999999999999999999999998754211 32211 222333
Q ss_pred CCCCC-----------------------------CcccCCcccChHHHHH-hcCCCCCccHHHHHHHHHHhhcC---CCc
Q 021362 158 DGFHL-----------------------------YLSQLDAMEDPKEAHA-RRGAPWTFNPLLLLNCLKNLRNQ---GSV 204 (313)
Q Consensus 158 d~~~~-----------------------------~~~~ltv~e~~~~~~~-~~~~~~~~~~~~~~~~l~~l~~~---~~~ 204 (313)
.-..- .....|+.|.+...+. ++.........+++.+|.-||.. .++
T Consensus 329 Evvad~t~Ai~tvl~aD~kRl~lLeee~~L~~q~e~Gd~taaErl~~v~~ELraiGA~sAEarARRILAGLGFskEMQ~r 408 (807)
T KOG0066|consen 329 EVVADSTSAIDTVLKADKKRLALLEEEAKLMSQIEEGDTTAAERLKEVADELRAIGADSAEARARRILAGLGFSKEMQER 408 (807)
T ss_pred eeeecCcHHHHHHHHhhHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHhccccchhHHHHHHhhcCCChhHhcC
Confidence 21100 0001122222221110 11111122334455566666622 345
Q ss_pred cCCCCCCcCCCcchhhhhhccCceEEEEcCCccccCh----hhHHHHHhhccceEEEEcChHHHHH
Q 021362 205 YAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFDEKWFIEVDLDTAMQ 266 (313)
Q Consensus 205 ~~~~LSgG~kqRv~ia~al~~~ar~Li~d~~~lllDE----~~~~~l~~l~~~~i~vtHd~~~~~~ 266 (313)
+...+|||.|.||++|+||-..+-+|++|+|+.-||- -+-..|..+.+..++|+||..+...
T Consensus 409 Pt~kFSGGWRMRvSLARALflEPTLLMLDEPTNHLDLNAVIWLdNYLQgWkKTLLIVSHDQgFLD~ 474 (807)
T KOG0066|consen 409 PTTKFSGGWRMRVSLARALFLEPTLLMLDEPTNHLDLNAVIWLDNYLQGWKKTLLIVSHDQGFLDS 474 (807)
T ss_pred CccccCCceeeehhHHHHHhcCceeeeecCCccccccceeeehhhHHhhhhheeEEEecccchHHH
Confidence 6669999999999996665555555555555555554 2234455555566799999988765
|
|
| >cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2 | Back alignment and domain information |
|---|
Probab=99.45 E-value=8.1e-13 Score=113.78 Aligned_cols=175 Identities=22% Similarity=0.283 Sum_probs=115.3
Q ss_pred EEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCCCCeEEEEecCCCCCCcccCCcccChHHHHHhcCCCCCccH
Q 021362 109 IVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNP 188 (313)
Q Consensus 109 iv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~~~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~~~~~~ 188 (313)
+++|.|++|||||||.+.|...+. . . ...+.++.+|+|+.+. .. +.. ....+..+...+.
T Consensus 1 ii~i~G~sgsGKttla~~l~~~l~---~-~----------~~~~~~i~~Ddf~~~~--~~--~~~--~~g~~d~~~~~d~ 60 (179)
T cd02028 1 VVGIAGPSGSGKTTFAKKLSNQLR---V-N----------GIGPVVISLDDYYVPR--KT--PRD--EDGNYDFESILDL 60 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHH---H-c----------CCCEEEEehhhcccCc--cc--ccc--cCCCCCCCccccH
Confidence 589999999999999999999985 1 1 1236678999876543 01 000 0011222223466
Q ss_pred HHHHHHHHHhhcCCCccCCCCCCcCCCcchhhhhhccCceEEEEcCCccccChhhHHHHHhhccceEEEEcChHH-HHHH
Q 021362 189 LLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEKWFIEVDLDT-AMQR 267 (313)
Q Consensus 189 ~~~~~~l~~l~~~~~~~~~~LSgG~kqRv~ia~al~~~ar~Li~d~~~lllDE~~~~~l~~l~~~~i~vtHd~~~-~~~r 267 (313)
+.+.+.+..+..+.....|.++.-..++..-......+..++|.|+.+++.+ .++++.+..|+++.+.+. .+.|
T Consensus 61 ~~l~~~l~~l~~~~~~~~p~yd~~~~~~~~~~~~~~~~~~vIIvEG~~~l~~-----~l~~~~d~~I~vd~~~~~~rl~r 135 (179)
T cd02028 61 DLLNKNLHDLLNGKEVELPIYDFRTGKRRGYRKLKLPPSGVVILEGIYALNE-----RLRSLLDIRVAVSGGVHLNRLLR 135 (179)
T ss_pred HHHHHHHHHHHCCCeeecccceeECCccCCCceEEeCCCCEEEEecHHhcCH-----hHHhhcCEEEEEeCCccHHHHHH
Confidence 7777888877766666666555444444332112345688999999998753 677788889999999997 6655
Q ss_pred Hhhccc-ccCCchHHHHHHHHhcCCchhH--HhhhcccCccEEeec
Q 021362 268 VLKRHI-STGKPPDVAKWRIEYNDRPNAE--LIMKSKKNADLVIKS 310 (313)
Q Consensus 268 v~griv-~~G~~~ev~~~~~~~~~~~~~~--~i~~~~~~ad~ii~~ 310 (313)
.+-|.+ +.|...+-..+++ ...|..+ ++.+.+..||+|+.+
T Consensus 136 ri~RD~~~rg~~~~~~i~~~--~~~~~~~~~~~~~~~~~ad~~~~~ 179 (179)
T cd02028 136 RVVRDIQFRGYSAELTILMW--PSVPSGEEFIIPPLQEAAIVMFNS 179 (179)
T ss_pred HHHHhHHhhCCCHHHHhhhc--ccccCchhhcCCCchhccceeccC
Confidence 555554 5787666555544 3455555 557789999999863
|
7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK). |
| >PRK15453 phosphoribulokinase; Provisional | Back alignment and domain information |
|---|
Probab=99.44 E-value=5.2e-12 Score=114.84 Aligned_cols=186 Identities=16% Similarity=0.098 Sum_probs=126.2
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCCCCeEEEEecCCCCCCc-ccCCcccChHHHHH---hcC
Q 021362 106 VKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYL-SQLDAMEDPKEAHA---RRG 181 (313)
Q Consensus 106 ~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~~~~i~~v~qd~~~~~~-~~ltv~e~~~~~~~---~~~ 181 (313)
++-++||.|.+||||||+.+.|+..+. . ....+.++.+|.|+-++ .++.. ..+...+ .+.
T Consensus 4 k~piI~ItG~SGsGKTTva~~l~~if~---~-----------~~~~~~vi~~D~yh~ydr~~~~~--~~~~~~r~g~nfd 67 (290)
T PRK15453 4 KHPIIAVTGSSGAGTTTVKRAFEKIFR---R-----------ENINAAVVEGDSFHRYTRPEMKA--AIAKARAAGRHFS 67 (290)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHh---h-----------cCCCeEEEecccccccChhhHhh--hhHHHHhcCCCCC
Confidence 456999999999999999999998775 1 11235678899887532 11211 1111111 222
Q ss_pred C--CCCccHHHHHHHHHHhhcCCCccCCCCC------------CcCCCcchhhhhhccCceEEEEcCCccccChhhHHHH
Q 021362 182 A--PWTFNPLLLLNCLKNLRNQGSVYAPSFD------------HGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDV 247 (313)
Q Consensus 182 ~--~~~~~~~~~~~~l~~l~~~~~~~~~~LS------------gG~kqRv~ia~al~~~ar~Li~d~~~lllDE~~~~~l 247 (313)
. |.+.+.+.+.+.++.++.......+.|. -|.-.. ...+..++++|+.|+-+.+..- -...+
T Consensus 68 hf~PdAnd~dlL~~~l~~l~~~~~g~~~~Y~h~f~~a~~~~~~~gtft~---~e~i~~p~dvIivEGLh~~~~~-~~~~l 143 (290)
T PRK15453 68 HFGPEANLFDELEQLFREYGETGTGKTRKYLHTDDEAVPYNQVPGTFTP---WEPLPEGTDLLFYEGLHGGVVT-DQVDV 143 (290)
T ss_pred CCCCCcccHHHHHHHHHHHhcCCCcceeeccccccccccCCCCCCccCC---ceEecCCCcEEEEecccccccc-ccHHH
Confidence 3 6778888888888888754433333332 111100 0112345889999998776421 12568
Q ss_pred HhhccceEEEEcChHHHHHHHhhccc-ccCCchHHHHHHHHhcCCchhH-HhhhcccCccEEeecCC
Q 021362 248 SSMFDEKWFIEVDLDTAMQRVLKRHI-STGKPPDVAKWRIEYNDRPNAE-LIMKSKKNADLVIKSID 312 (313)
Q Consensus 248 ~~l~~~~i~vtHd~~~~~~rv~griv-~~G~~~ev~~~~~~~~~~~~~~-~i~~~~~~ad~ii~~~~ 312 (313)
+++.+-.|+|+-+.++...|.+.|.+ ++|.+.|-+.+.|..+. |++. ||.|++..|||.+..++
T Consensus 144 r~~~DlkIfVdp~~dlr~irRI~RD~~ERGrs~EsVi~qilrrm-Pdy~~yI~PQ~~~tdInfqrvp 209 (290)
T PRK15453 144 AQHVDLLIGVVPIVNLEWIQKIHRDTSERGYSREAVMDTILRRM-PDYINYITPQFSRTHINFQRVP 209 (290)
T ss_pred HHhCCeeEeeCCcHhHHHHHHHHhhhHhhCCCHHHHHHHHHHhC-ChHhhhCCCCcccCcEEEEeCC
Confidence 88999999999999988887777776 57998887777788775 8877 99999999999988754
|
|
| >cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes | Back alignment and domain information |
|---|
Probab=99.40 E-value=1.3e-13 Score=121.17 Aligned_cols=129 Identities=12% Similarity=0.076 Sum_probs=85.8
Q ss_pred cccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCCCCeEEEEecCCCCCCcccCCcccChHH
Q 021362 96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKE 175 (313)
Q Consensus 96 ~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~~~~i~~v~qd~~~~~~~~ltv~e~~~~ 175 (313)
+.+|++|++++|++++|.||||+||||++++|+++.- ..+...+++-.. ..+++.+++.
T Consensus 18 v~~~~~~~~~~~~~~~l~G~n~~GKstll~~i~~~~~---------------la~~G~~vpa~~-----~~l~~~d~I~- 76 (204)
T cd03282 18 IPNDIYLTRGSSRFHIITGPNMSGKSTYLKQIALLAI---------------MAQIGCFVPAEY-----ATLPIFNRLL- 76 (204)
T ss_pred EEeeeEEeeCCCcEEEEECCCCCCHHHHHHHHHHHHH---------------HHHcCCCcchhh-----cCccChhhee-
Confidence 8999999999999999999999999999999998863 111112222211 1234444442
Q ss_pred HHHhcCCCCCccHHHHHHHHHHhhc--CCCccCCCCCCcCCCcchhhhhhccCceEEEEcCCccccChh-----hHHHHH
Q 021362 176 AHARRGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGG-----VWKDVS 248 (313)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~l~~l~~--~~~~~~~~LSgG~kqRv~ia~al~~~ar~Li~d~~~lllDE~-----~~~~l~ 248 (313)
..++. ........||+||+|. ..+..++.++.++++|++.-.+|.. .+..++
T Consensus 77 --------------------~~~~~~d~~~~~~S~fs~e~~~~-~~il~~~~~~~lvllDE~~~gt~~~~~~~l~~~il~ 135 (204)
T cd03282 77 --------------------SRLSNDDSMERNLSTFASEMSET-AYILDYADGDSLVLIDELGRGTSSADGFAISLAILE 135 (204)
T ss_pred --------------------EecCCccccchhhhHHHHHHHHH-HHHHHhcCCCcEEEeccccCCCCHHHHHHHHHHHHH
Confidence 11221 1233455888999875 4445667788888899988888771 233344
Q ss_pred hhcc---ceEEEEcChHHHHH
Q 021362 249 SMFD---EKWFIEVDLDTAMQ 266 (313)
Q Consensus 249 ~l~~---~~i~vtHd~~~~~~ 266 (313)
.+.+ ..+++||+.+.+..
T Consensus 136 ~l~~~~~~~i~~TH~~~l~~~ 156 (204)
T cd03282 136 CLIKKESTVFFATHFRDIAAI 156 (204)
T ss_pred HHHhcCCEEEEECChHHHHHH
Confidence 4432 35799999998865
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c |
| >cd03277 ABC_SMC5_euk Eukaryotic SMC5 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains | Back alignment and domain information |
|---|
Probab=99.40 E-value=6.8e-13 Score=117.36 Aligned_cols=64 Identities=13% Similarity=0.008 Sum_probs=49.2
Q ss_pred CccCCCCCCcCCCcchhhhhh----ccCceEEEEcCCccccCh----hhHHHHHhhccc-----eEEEEcChHHHHH
Q 021362 203 SVYAPSFDHGVGDPVEDDILV----GLQHKVVIVDGNYLFLDG----GVWKDVSSMFDE-----KWFIEVDLDTAMQ 266 (313)
Q Consensus 203 ~~~~~~LSgG~kqRv~ia~al----~~~ar~Li~d~~~lllDE----~~~~~l~~l~~~-----~i~vtHd~~~~~~ 266 (313)
+..+.+||+||||++.++.++ +.+++++++|+|+..+|+ .+++.|.++.++ .+++|||+.....
T Consensus 121 ~~~~~~LS~G~~q~~~i~~~la~~~~~~p~llllDEP~~~LD~~~~~~i~~~l~~~~~~~g~~~viiith~~~~~~~ 197 (213)
T cd03277 121 ELDPHHQSGGERSVSTMLYLLSLQELTRCPFRVVDEINQGMDPTNERKVFDMLVETACKEGTSQYFLITPKLLPGLN 197 (213)
T ss_pred ccchhhccccHHHHHHHHHHHHHHhccCCCEEEEecccccCCHHHHHHHHHHHHHHhhcCCCceEEEEchhhccCCc
Confidence 445669999999998876543 478999999999999998 566666666433 3799999876654
|
Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for |
| >cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport | Back alignment and domain information |
|---|
Probab=99.35 E-value=1.4e-12 Score=110.45 Aligned_cols=121 Identities=12% Similarity=0.095 Sum_probs=78.7
Q ss_pred ccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCCCCeEEEEecCCCCCCcccCCcccChHHHHHhc
Q 021362 101 ASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARR 180 (313)
Q Consensus 101 sl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~~~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~ 180 (313)
++.+.++.++.|+|||||||||+++.+....- ...|.+..... . +...+++.. .+.+
T Consensus 15 ~i~~~~~~~~~i~G~NgsGKS~~l~~i~~~~~---~~~~~~~~~~~-~-~~g~~~~~~-------------~~~~----- 71 (162)
T cd03227 15 DVTFGEGSLTIITGPNGSGKSTILDAIGLALG---GAQSATRRRSG-V-KAGCIVAAV-------------SAEL----- 71 (162)
T ss_pred EEecCCCCEEEEECCCCCCHHHHHHHHHHHHH---hcchhhhccCc-c-cCCCcceee-------------EEEE-----
Confidence 33445567999999999999999999888775 44433322100 0 000001110 0000
Q ss_pred CCCCCccHHHHHHHHHHhhcCCCccCCCCCCcCCCcchhhhhhcc----CceEEEEcCCccccCh----hhHHHHHhhcc
Q 021362 181 GAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGL----QHKVVIVDGNYLFLDG----GVWKDVSSMFD 252 (313)
Q Consensus 181 ~~~~~~~~~~~~~~l~~l~~~~~~~~~~LSgG~kqRv~ia~al~~----~ar~Li~d~~~lllDE----~~~~~l~~l~~ 252 (313)
-....+||+||+||+.++++++. .++++++|++.-.+|. .+.+.+.++..
T Consensus 72 ----------------------i~~~~~lS~G~~~~~~la~~L~~~~~~~~~llllDEp~~gld~~~~~~l~~~l~~~~~ 129 (162)
T cd03227 72 ----------------------IFTRLQLSGGEKELSALALILALASLKPRPLYILDEIDRGLDPRDGQALAEAILEHLV 129 (162)
T ss_pred ----------------------ehheeeccccHHHHHHHHHHHHhcCCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh
Confidence 00011399999999999999976 6799999999999998 34555555543
Q ss_pred ---ceEEEEcChHHHHH
Q 021362 253 ---EKWFIEVDLDTAMQ 266 (313)
Q Consensus 253 ---~~i~vtHd~~~~~~ 266 (313)
..+++||+.+....
T Consensus 130 ~~~~vii~TH~~~~~~~ 146 (162)
T cd03227 130 KGAQVIVITHLPELAEL 146 (162)
T ss_pred cCCEEEEEcCCHHHHHh
Confidence 34799999998765
|
These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins. |
| >cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis | Back alignment and domain information |
|---|
Probab=99.35 E-value=6.4e-13 Score=104.21 Aligned_cols=68 Identities=19% Similarity=0.066 Sum_probs=55.4
Q ss_pred ccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCC--------CCCeEEEEecCCCCCCccc
Q 021362 95 LPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK--------PPDVATVLPMDGFHLYLSQ 166 (313)
Q Consensus 95 ~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~--------~~~~i~~v~qd~~~~~~~~ 166 (313)
.+|++++|++++|++++|+||||||||||++++. +|++.++|.+ ..+.+++++|+ .++
T Consensus 3 ~aL~~vsl~i~~ge~v~I~GpSGsGKSTLl~~l~---------~G~i~~~g~di~~~~~~~~~~~~~~~~q~--lf~--- 68 (107)
T cd00820 3 TSLHGVLVDVYGKVGVLITGDSGIGKTELALELI---------KRKHRLVGDDNVEIREDSKDELIGRNPEL--GLE--- 68 (107)
T ss_pred eEEEeeEEEEcCCEEEEEEcCCCCCHHHHHHHhh---------CCeEEEeeEeHHHhhhhhcCCEEEEechh--cch---
Confidence 4899999999999999999999999999999975 5788888865 23446777777 223
Q ss_pred CCcccChHHH
Q 021362 167 LDAMEDPKEA 176 (313)
Q Consensus 167 ltv~e~~~~~ 176 (313)
.++++|+.++
T Consensus 69 ~ti~~Ni~~~ 78 (107)
T cd00820 69 IRLRLNIFLI 78 (107)
T ss_pred hhHHhhceee
Confidence 5899999874
|
It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural |
| >cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms | Back alignment and domain information |
|---|
Probab=99.34 E-value=3.7e-12 Score=109.59 Aligned_cols=58 Identities=12% Similarity=0.043 Sum_probs=47.2
Q ss_pred CCCcCCCcchhhhhhc----cCceEEEEcCCccccCh----hhHHHHHhhccc---eEEEEcChHHHHH
Q 021362 209 FDHGVGDPVEDDILVG----LQHKVVIVDGNYLFLDG----GVWKDVSSMFDE---KWFIEVDLDTAMQ 266 (313)
Q Consensus 209 LSgG~kqRv~ia~al~----~~ar~Li~d~~~lllDE----~~~~~l~~l~~~---~i~vtHd~~~~~~ 266 (313)
||+||+||++++++++ .+++++++|++...+|. .+.+.+.++... .+++||+++.+..
T Consensus 95 LS~Ge~~r~~Laral~~~~~~~p~llilDEp~~~LD~~~~~~i~~~L~~~~~~g~tiIiiSH~~~~~~~ 163 (178)
T cd03239 95 LSGGEKSLSALALIFALQEIKPSPFYVLDEIDAALDPTNRRRVSDMIKEMAKHTSQFIVITLKKEMFEN 163 (178)
T ss_pred CCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHhh
Confidence 9999999999999985 68999999999999998 455555555433 4799999887643
|
SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression. |
| >KOG0063 consensus RNAse L inhibitor, ABC superfamily [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.32 E-value=3e-12 Score=120.60 Aligned_cols=155 Identities=17% Similarity=0.185 Sum_probs=105.7
Q ss_pred ccccccccCCC-----cEEEEECCCCCcHHHHHHHHHHHhcccCCCCce-eecCCCCCCCeEEEEecCCCCCCcccCCcc
Q 021362 97 TSALASNVNVK-----HIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVKPPDVATVLPMDGFHLYLSQLDAM 170 (313)
Q Consensus 97 L~~vsl~i~~G-----eiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~-i~~~g~~~~~~i~~v~qd~~~~~~~~ltv~ 170 (313)
+-+..|.|+.| |++..+|.||.|||||+++++|.++ |+.|. + +.-.++|-+|.-. +...-||+
T Consensus 352 ~g~F~L~i~~GefsdSeiivmlgEngtgkTTfi~mlag~~~---pd~~~e~------p~lnVSykpqkis--pK~~~tvR 420 (592)
T KOG0063|consen 352 VGDFCLCIKVGEFSDSEIIVMLGENGTGKTTFIRMLAGRLK---PDEGGEI------PVLNVSYKPQKIS--PKREGTVR 420 (592)
T ss_pred eeeEEEEEeecccCCceeEEEEccCCcchhHHHHHHhcCCC---CCccCcc------cccceeccccccC--ccccchHH
Confidence 34455555555 5899999999999999999999998 98763 2 2224777777632 22234555
Q ss_pred cChHHHHHhcCCCCCccHHHHHHHHHHhh--cCCCccCCCCCCcCCCcchhhhhhccCceEEEEcCCccccChh------
Q 021362 171 EDPKEAHARRGAPWTFNPLLLLNCLKNLR--NQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGG------ 242 (313)
Q Consensus 171 e~~~~~~~~~~~~~~~~~~~~~~~l~~l~--~~~~~~~~~LSgG~kqRv~ia~al~~~ar~Li~d~~~lllDE~------ 242 (313)
+-+..- .+. .-.+...+.++++.|. ...++.+..||||++|||++|..+-.+|.+.+.|++...||.+
T Consensus 421 ~ll~~k--Ir~--ay~~pqF~~dvmkpL~ie~i~dqevq~lSggelQRval~KOGGKpAdvYliDEpsAylDSeQRi~As 496 (592)
T KOG0063|consen 421 QLLHTK--IRD--AYMHPQFVNDVMKPLQIENIIDQEVQGLSGGELQRVALALCLGKPADVYLIDEPSAYLDSEQRIIAS 496 (592)
T ss_pred HHHHHH--hHh--hhcCHHHHHhhhhhhhHHHHHhHHhhcCCchhhHHHHHHHhcCCCCceEEecCchhhcChHHHHHHH
Confidence 543321 111 1123344556666665 4457788899999999999999999999999999999999982
Q ss_pred --hHHHHHhhccceEEEEcChHHHHH
Q 021362 243 --VWKDVSSMFDEKWFIEVDLDTAMQ 266 (313)
Q Consensus 243 --~~~~l~~l~~~~i~vtHd~~~~~~ 266 (313)
+.+.|....+...+|.||+-.+..
T Consensus 497 kvikRfilhakktafvVEhdfImaTY 522 (592)
T KOG0063|consen 497 KVIKRFILHAKKTAFVVEHDFIMATY 522 (592)
T ss_pred HHHHHHHHhccchhhhhhhHHHHHHh
Confidence 222222222234589999766654
|
|
| >cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch | Back alignment and domain information |
|---|
Probab=99.30 E-value=2.2e-12 Score=113.05 Aligned_cols=128 Identities=12% Similarity=0.047 Sum_probs=73.0
Q ss_pred ccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCCCCeEEEEecCCCCCCcccCCcccChHHHHH
Q 021362 99 ALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHA 178 (313)
Q Consensus 99 ~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~~~~i~~v~qd~~~~~~~~ltv~e~~~~~~~ 178 (313)
..++++.+|++++|+||||||||||+++|++..-- +..|...... ...++++.|... .+...++
T Consensus 21 ~~~~~l~~~~~~~l~G~Ng~GKStll~~i~~~~~~--~~~g~~~~~~---~~~i~~~dqi~~-----~~~~~d~------ 84 (202)
T cd03243 21 PNDINLGSGRLLLITGPNMGGKSTYLRSIGLAVLL--AQIGCFVPAE---SASIPLVDRIFT-----RIGAEDS------ 84 (202)
T ss_pred eeeEEEcCCeEEEEECCCCCccHHHHHHHHHHHHH--HHcCCCcccc---ccccCCcCEEEE-----EecCccc------
Confidence 34556678999999999999999999999954420 3333221110 001121111100 0111111
Q ss_pred hcCCCCCccHHHHHHHHHHhhcCCCccCCCCCCcCCCcchhhhhhccCceEEEEcCCccccChh----hHH-HHHhhcc-
Q 021362 179 RRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGG----VWK-DVSSMFD- 252 (313)
Q Consensus 179 ~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~LSgG~kqRv~ia~al~~~ar~Li~d~~~lllDE~----~~~-~l~~l~~- 252 (313)
.......++.+++| +..+.+.+.+++++++|+++..+|.. +.. .++.+.+
T Consensus 85 -----------------------i~~~~s~~~~e~~~-l~~i~~~~~~~~llllDEp~~gld~~~~~~l~~~ll~~l~~~ 140 (202)
T cd03243 85 -----------------------ISDGRSTFMAELLE-LKEILSLATPRSLVLIDELGRGTSTAEGLAIAYAVLEHLLEK 140 (202)
T ss_pred -----------------------ccCCceeHHHHHHH-HHHHHHhccCCeEEEEecCCCCCCHHHHHHHHHHHHHHHHhc
Confidence 11122344555554 44445666789999999999999982 222 2333332
Q ss_pred --ceEEEEcChHHHHH
Q 021362 253 --EKWFIEVDLDTAMQ 266 (313)
Q Consensus 253 --~~i~vtHd~~~~~~ 266 (313)
..+++||+.+.+..
T Consensus 141 ~~~vi~~tH~~~~~~~ 156 (202)
T cd03243 141 GCRTLFATHFHELADL 156 (202)
T ss_pred CCeEEEECChHHHHHH
Confidence 25799999888765
|
Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru |
| >cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes | Back alignment and domain information |
|---|
Probab=99.28 E-value=1.5e-12 Score=115.94 Aligned_cols=127 Identities=13% Similarity=0.129 Sum_probs=81.9
Q ss_pred cccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCCCCeEEEEecCCCCCCcccCCcccChHH
Q 021362 96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKE 175 (313)
Q Consensus 96 ~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~~~~i~~v~qd~~~~~~~~ltv~e~~~~ 175 (313)
+.+|+++++.++++++|.||||+|||||+++|+-..- ..+...++|.+... +..
T Consensus 19 v~~~~~~~~~~~~~~~l~G~n~~GKstll~~i~~~~~---------------la~~g~~vpa~~~~-----~~~------ 72 (222)
T cd03285 19 IPNDVTLTRGKSRFLIITGPNMGGKSTYIRQIGVIVL---------------MAQIGCFVPCDSAD-----IPI------ 72 (222)
T ss_pred EEeeEEEeecCCeEEEEECCCCCChHHHHHHHHHHHH---------------HHHhCCCcCcccEE-----Eec------
Confidence 7899999999999999999999999999999984321 00001133333110 010
Q ss_pred HHHhcCCCCCccHHHHHHHHHHhhcCCCccCCCCCCcCCCcchhhhhh--ccCceEEEEcCC---ccccChh--hHHHHH
Q 021362 176 AHARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILV--GLQHKVVIVDGN---YLFLDGG--VWKDVS 248 (313)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~LSgG~kqRv~ia~al--~~~ar~Li~d~~---~lllDE~--~~~~l~ 248 (313)
+.+++..++... .....+|.||++++.++.++ +.++.++++|++ +..+|.. .+..++
T Consensus 73 ---------------~~~il~~~~l~d-~~~~~lS~~~~e~~~~a~il~~~~~~sLvLLDEp~~gT~~lD~~~~~~~il~ 136 (222)
T cd03285 73 ---------------VDCILARVGASD-SQLKGVSTFMAEMLETAAILKSATENSLIIIDELGRGTSTYDGFGLAWAIAE 136 (222)
T ss_pred ---------------cceeEeeecccc-chhcCcChHHHHHHHHHHHHHhCCCCeEEEEecCcCCCChHHHHHHHHHHHH
Confidence 112223333221 12458999999999998888 788899999999 7778872 222223
Q ss_pred hhc----cceEEEEcChHHH
Q 021362 249 SMF----DEKWFIEVDLDTA 264 (313)
Q Consensus 249 ~l~----~~~i~vtHd~~~~ 264 (313)
.+. ...+++||+.+..
T Consensus 137 ~l~~~~~~~vlisTH~~el~ 156 (222)
T cd03285 137 YIATQIKCFCLFATHFHELT 156 (222)
T ss_pred HHHhcCCCeEEEEechHHHH
Confidence 332 1246999974443
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c |
| >cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+) | Back alignment and domain information |
|---|
Probab=99.22 E-value=1e-10 Score=101.23 Aligned_cols=138 Identities=25% Similarity=0.344 Sum_probs=96.4
Q ss_pred EEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCCCCeEEEEecCCCCCCcccCCcccChHHHHHhcCCCCCccH
Q 021362 109 IVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNP 188 (313)
Q Consensus 109 iv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~~~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~~~~~~ 188 (313)
+++|.|++|||||||.+.|+..+. .+.++.+|+++.....+...++ ....++.|.+.+.
T Consensus 1 ii~i~G~sgsGKTtla~~l~~~~~------------------~~~~i~~Ddf~~~~~~~~~~~~---~~~~~d~p~a~D~ 59 (187)
T cd02024 1 IVGISGVTNSGKTTLAKLLQRILP------------------NCCVIHQDDFFKPEDEIPVDEN---GFKQWDVLEALDM 59 (187)
T ss_pred CEEEECCCCCCHHHHHHHHHHHcC------------------CCeEEccccccCCcccCChHhh---cCCCCCCcccccH
Confidence 589999999999999999999873 1456889988776533322211 2234566778888
Q ss_pred HHHHHHHHHhhcCCCccCCCCCCcCCCcch-------------hhhhhccCceEEEEcCCccccChhhHHHHHhhccceE
Q 021362 189 LLLLNCLKNLRNQGSVYAPSFDHGVGDPVE-------------DDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEKW 255 (313)
Q Consensus 189 ~~~~~~l~~l~~~~~~~~~~LSgG~kqRv~-------------ia~al~~~ar~Li~d~~~lllDE~~~~~l~~l~~~~i 255 (313)
+.+.+.|..+........+.++.+...... -+......+++++.|+.+++.|+ .+.++++..|
T Consensus 60 ~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iViVEG~~l~~~~----~l~~l~D~~I 135 (187)
T cd02024 60 EAMMSTLDYWRETGHFPKFLRSHGNENDPEKEFIEDAQIEETKADLLGAEDLHILIVDGFLLYNYK----PLVDLFDIRY 135 (187)
T ss_pred HHHHHHHHHHHcCCCccCcccCccccccccccccchhhhhhccccccccCCCcEEEEechHhcCCH----HHHhhcCcee
Confidence 999999988875543333344443321110 11123455889999999988875 5778999999
Q ss_pred EEEcChHHHHHHHhhc
Q 021362 256 FIEVDLDTAMQRVLKR 271 (313)
Q Consensus 256 ~vtHd~~~~~~rv~gr 271 (313)
|++-|.+++.+|.+.|
T Consensus 136 fvd~~~d~~~~Rr~~R 151 (187)
T cd02024 136 FLRVPYETCKRRREAR 151 (187)
T ss_pred EecCCHHHHHHHHHHc
Confidence 9999999999977744
|
This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside. |
| >PRK06696 uridine kinase; Validated | Back alignment and domain information |
|---|
Probab=99.20 E-value=1.2e-10 Score=103.63 Aligned_cols=184 Identities=24% Similarity=0.337 Sum_probs=108.0
Q ss_pred CCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCCCCeEEEEecCCCCCCcccCCcccChHHHHHhcCC-C
Q 021362 105 NVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGA-P 183 (313)
Q Consensus 105 ~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~~~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~-~ 183 (313)
...-+|||.|++|||||||.+.|+..++ ..| ..+..+++|+|+.... ......+ ....+. .
T Consensus 20 ~~~~iI~I~G~sgsGKSTlA~~L~~~l~----~~g----------~~v~~~~~Ddf~~~~~---~r~~~~~-~~~~g~~~ 81 (223)
T PRK06696 20 TRPLRVAIDGITASGKTTFADELAEEIK----KRG----------RPVIRASIDDFHNPRV---IRYRRGR-ESAEGYYE 81 (223)
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHHH----HcC----------CeEEEeccccccCCHH---HHHHcCC-CChhhcCc
Confidence 3456999999999999999999999985 222 1244567887765421 1000000 000010 1
Q ss_pred CCccHHHHHHHHHH-hhcCCC--ccCCCCCCcCCCcchhhhhhccCceEEEEcCCccccChhhHHHHHhhccceEEEEcC
Q 021362 184 WTFNPLLLLNCLKN-LRNQGS--VYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEKWFIEVD 260 (313)
Q Consensus 184 ~~~~~~~~~~~l~~-l~~~~~--~~~~~LSgG~kqRv~ia~al~~~ar~Li~d~~~lllDE~~~~~l~~l~~~~i~vtHd 260 (313)
...+.+.+.+.+-. +..... ...+.++.-...+..-.........++++|+.+++- ..+..+++..|+++-+
T Consensus 82 ~~~d~~~L~~~l~~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~vviveg~~l~~-----~~~~~~~d~~i~v~~~ 156 (223)
T PRK06696 82 DAYDYTALRRLLLDPLGPNGDRQYRTASHDLKTDIPVHNPPLLAAPNAVLIVDGTFLLR-----PELRDLWDYKIFLDTD 156 (223)
T ss_pred cccCHHHHHHHHHhhccCCCceeEeeeeeccccCcccCCCceecCCCCEEEEecHHHhh-----hhHHhhCCEEEEEECC
Confidence 23455555443332 321111 111122322222221111222346789999988643 3566778889999999
Q ss_pred hHHHHHHHhhccc-ccCCchHHHHHHHHhcCCchhH-Hhhhc--ccCccEEeecCC
Q 021362 261 LDTAMQRVLKRHI-STGKPPDVAKWRIEYNDRPNAE-LIMKS--KKNADLVIKSID 312 (313)
Q Consensus 261 ~~~~~~rv~griv-~~G~~~ev~~~~~~~~~~~~~~-~i~~~--~~~ad~ii~~~~ 312 (313)
.+....|+..|.. ..|..++.... |...+.++++ |+.+. +..||+||++.+
T Consensus 157 ~e~~~~R~~~Rd~~~~g~~~~~~~~-~~~r~~~~~~~y~~~~~p~~~ADivi~n~~ 211 (223)
T PRK06696 157 FEVSRRRGAKRDTEAFGSYEEAEKM-YLARYHPAQKLYIAEANPKERADVVIDNSD 211 (223)
T ss_pred HHHHHHHHHHhhhhhhCCchHHHHH-HHHHHhHHHHHHHhhcChHhhCeEEEECCC
Confidence 9999988886544 45765555444 5567888888 55444 788999999875
|
|
| >cd03241 ABC_RecN RecN ATPase involved in DNA repair; ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules | Back alignment and domain information |
|---|
Probab=99.19 E-value=2.9e-11 Score=111.03 Aligned_cols=59 Identities=15% Similarity=-0.024 Sum_probs=45.7
Q ss_pred CCCCcCCCcchhhhhhcc----CceEEEEcCCccccChh----hHHHHHhhcc--ceEEEEcChHHHHH
Q 021362 208 SFDHGVGDPVEDDILVGL----QHKVVIVDGNYLFLDGG----VWKDVSSMFD--EKWFIEVDLDTAMQ 266 (313)
Q Consensus 208 ~LSgG~kqRv~ia~al~~----~ar~Li~d~~~lllDE~----~~~~l~~l~~--~~i~vtHd~~~~~~ 266 (313)
.|||||+||+++|++++. +++++++|+|...||.. +.+.+.++.. ..+++||+++....
T Consensus 170 ~lS~G~~~r~~la~~~~~~~~~~p~vlllDEp~~~Ld~~~~~~l~~~l~~~~~~~tii~isH~~~~~~~ 238 (276)
T cd03241 170 IASGGELSRLMLALKAILARKDAVPTLIFDEIDTGISGEVAQAVGKKLKELSRSHQVLCITHLPQVAAM 238 (276)
T ss_pred hcChhHHHHHHHHHHHHHhcCCCCCEEEEECCccCCCHHHHHHHHHHHHHHhCCCEEEEEechHHHHHh
Confidence 599999999999986543 89999999999999993 4445554433 24799999986543
|
The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes | Back alignment and domain information |
|---|
Probab=99.14 E-value=2.7e-10 Score=100.77 Aligned_cols=129 Identities=9% Similarity=0.010 Sum_probs=78.7
Q ss_pred cccccccccCCCcEEEEECCCCCcHHHHHHHHHH--HhcccCCCCceeecCCCCCCCeEEEEecCCCCCCcccCCcccCh
Q 021362 96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVR--RINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDP 173 (313)
Q Consensus 96 ~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~g--l~~~~~p~~G~i~~~g~~~~~~i~~v~qd~~~~~~~~ltv~e~~ 173 (313)
+-+|++++=..+.++.|.||||+|||||+|.|+. ++ +..|...... .-.++|+.|....+.. ..++.+++
T Consensus 18 vpnd~~l~~~~~~~~~itGpNg~GKStlLk~i~~~~~l----a~~G~~v~a~---~~~~~~~d~i~~~l~~-~~si~~~~ 89 (213)
T cd03281 18 VPNDTEIGGGGPSIMVITGPNSSGKSVYLKQVALIVFL----AHIGSFVPAD---SATIGLVDKIFTRMSS-RESVSSGQ 89 (213)
T ss_pred EcceEEecCCCceEEEEECCCCCChHHHHHHHHHHHHH----HhCCCeeEcC---CcEEeeeeeeeeeeCC-ccChhhcc
Confidence 4456665433337999999999999999999994 44 5566655432 1235655554221111 11222211
Q ss_pred HHHHHhcCCCCCccHHHHHHHHHHhhcCCCccCCCCCCcCCCcchhhhhhccCceEEEEcCCccccChh-----hHHHHH
Q 021362 174 KEAHARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGG-----VWKDVS 248 (313)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~LSgG~kqRv~ia~al~~~ar~Li~d~~~lllDE~-----~~~~l~ 248 (313)
. .+.. +-||++++++++..+.++++|++.-.+|.. .+..++
T Consensus 90 S---------------~f~~-------------------el~~l~~~l~~~~~~slvllDE~~~gtd~~~~~~~~~ail~ 135 (213)
T cd03281 90 S---------------AFMI-------------------DLYQVSKALRLATRRSLVLIDEFGKGTDTEDGAGLLIATIE 135 (213)
T ss_pred c---------------hHHH-------------------HHHHHHHHHHhCCCCcEEEeccccCCCCHHHHHHHHHHHHH
Confidence 0 0111 124556677777778999999999999861 234555
Q ss_pred hhcc------ceEEEEcChHHHHH
Q 021362 249 SMFD------EKWFIEVDLDTAMQ 266 (313)
Q Consensus 249 ~l~~------~~i~vtHd~~~~~~ 266 (313)
.+.+ ..+++||+.+.+..
T Consensus 136 ~l~~~~~~~~~vli~TH~~~l~~~ 159 (213)
T cd03281 136 HLLKRGPECPRVIVSTHFHELFNR 159 (213)
T ss_pred HHHhcCCCCcEEEEEcChHHHHHh
Confidence 5543 24799999999875
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c |
| >TIGR02858 spore_III_AA stage III sporulation protein AA | Back alignment and domain information |
|---|
Probab=99.06 E-value=9.1e-11 Score=107.20 Aligned_cols=38 Identities=21% Similarity=0.178 Sum_probs=35.2
Q ss_pred cEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCC
Q 021362 108 HIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP 148 (313)
Q Consensus 108 eiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~ 148 (313)
.-++|+||||||||||+++|+|+++ |++|++.++|++.
T Consensus 112 ~~~~i~g~~g~GKttl~~~l~~~~~---~~~G~i~~~g~~v 149 (270)
T TIGR02858 112 LNTLIISPPQCGKTTLLRDLARILS---TGISQLGLRGKKV 149 (270)
T ss_pred eEEEEEcCCCCCHHHHHHHHhCccC---CCCceEEECCEEe
Confidence 5789999999999999999999999 9999999998653
|
Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation. |
| >PLN02796 D-glycerate 3-kinase | Back alignment and domain information |
|---|
Probab=99.05 E-value=1.5e-09 Score=101.62 Aligned_cols=187 Identities=21% Similarity=0.216 Sum_probs=111.4
Q ss_pred ccccccccc---CCCcE-----EEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCCCCeEEEEecCCCCCCcccC
Q 021362 96 PTSALASNV---NVKHI-----VGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQL 167 (313)
Q Consensus 96 ~L~~vsl~i---~~Gei-----v~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~~~~i~~v~qd~~~~~~~~l 167 (313)
+++++++.+ ++|+. +||+|++|||||||++.|.+++. +. | ..++.+..|++++.....
T Consensus 81 il~~l~~~~~~~~~G~~~~pliIGI~G~sGSGKSTLa~~L~~lL~---~~-g----------~~~g~IsiDdfYLt~~e~ 146 (347)
T PLN02796 81 CEDQLEAHRSKFKDGDEIPPLVIGISAPQGCGKTTLVFALVYLFN---AT-G----------RRAASLSIDDFYLTAADQ 146 (347)
T ss_pred HHHHHHHHHhhhccCCCCCCEEEEEECCCCCcHHHHHHHHHHHhc---cc-C----------CceeEEEECCcccchhhH
Confidence 788888887 55665 99999999999999999999996 43 1 124567777665432111
Q ss_pred C-c-ccChHH-HHHhcCCCCCccHHHHHHHHHHhh----cCCCccCCCCC----CcCCCcchhh--hhhccCceEEEEcC
Q 021362 168 D-A-MEDPKE-AHARRGAPWTFNPLLLLNCLKNLR----NQGSVYAPSFD----HGVGDPVEDD--ILVGLQHKVVIVDG 234 (313)
Q Consensus 168 t-v-~e~~~~-~~~~~~~~~~~~~~~~~~~l~~l~----~~~~~~~~~LS----gG~kqRv~ia--~al~~~ar~Li~d~ 234 (313)
. . .++..- ....+|.+.+++.....+.++.+. .+....+|.|+ +|+..|..-. ..+..+++++|+|+
T Consensus 147 ~~L~~q~P~n~Ll~~RG~PgThDl~Ll~e~L~~L~~~~~~g~~v~iP~yDks~~~g~gDR~~~~~w~~v~~p~dVII~EG 226 (347)
T PLN02796 147 AKLAEANPGNALLELRGNAGSHDLALGVETLEALRKLNKEGSKMKVPRYDKSAYGGRGDRADPSTWPEVEGPLDVVLFEG 226 (347)
T ss_pred HHHHhhCcchhhhhcCCCCchhHHHHHHHHHHHHHhhhcCCCceecCCCCccccCCCCCCcCcccceEecCCCCEEEEcC
Confidence 1 0 111111 123456777788888888888876 33445677555 4445565321 22335689999999
Q ss_pred CccccCh--------------hhHHHHHhh-------ccceE-EEEcChHHHHHHHh---hcccc---cCCchHHHHHHH
Q 021362 235 NYLFLDG--------------GVWKDVSSM-------FDEKW-FIEVDLDTAMQRVL---KRHIS---TGKPPDVAKWRI 286 (313)
Q Consensus 235 ~~lllDE--------------~~~~~l~~l-------~~~~i-~vtHd~~~~~~rv~---griv~---~G~~~ev~~~~~ 286 (313)
-++++-+ .+-+.|... .+.-| +-.-|.+.+.++.. .+..+ .|-.++-+.. +
T Consensus 227 w~vG~~p~~~~~l~~~~~~l~~vN~~L~~y~~~w~~~~d~~i~L~a~~~~~v~~WR~qQE~~l~~~~~~gMsde~v~~-F 305 (347)
T PLN02796 227 WMLGFKPLGPDAVKAVDPQLEVVNKNLEAYYDAWDKLVDSWIVIKVDDPSWVYEWRLQAEIAMRAKGKPGMSDEEVAD-F 305 (347)
T ss_pred cccCCCCCChHHhhccChhHHHHHHHHHHHHHHHHHhhceEEEEeCCCchHHHHHHHHHHHHHHHhCCCCCCHHHHHH-H
Confidence 9999843 122222222 22223 44467888877333 22222 2334444444 5
Q ss_pred HhcCCchhHHh
Q 021362 287 EYNDRPNAELI 297 (313)
Q Consensus 287 ~~~~~~~~~~i 297 (313)
-.+++|..+.+
T Consensus 306 V~~~mP~y~~y 316 (347)
T PLN02796 306 VSRYMPAYKAY 316 (347)
T ss_pred HHHHHHHHHHH
Confidence 55778887743
|
|
| >TIGR03238 dnd_assoc_3 dnd system-associated protein 3 | Back alignment and domain information |
|---|
Probab=99.05 E-value=8.5e-11 Score=113.59 Aligned_cols=49 Identities=16% Similarity=0.191 Sum_probs=44.7
Q ss_pred ccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCc-eeecCCCCC
Q 021362 95 LPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQVKP 148 (313)
Q Consensus 95 ~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G-~i~~~g~~~ 148 (313)
.+|++|||++++||+++|+||||||||||++ +|+.. |++| +|.++|++.
T Consensus 20 ~vL~~Vsl~i~~GEiv~L~G~SGsGKSTLLr--~~l~~---~~sGg~I~ldg~~~ 69 (504)
T TIGR03238 20 RILVKFNKELPSSSLLFLCGSSGDGKSEILA--ENKRK---FSEGYEFFLDATHS 69 (504)
T ss_pred HHHhCCceeecCCCEEEEECCCCCCHHHHHh--cCCCC---CCCCCEEEECCEEC
Confidence 3899999999999999999999999999999 77887 8888 799999763
|
cereus E33L, Hahella chejuensis KCTC 2396, Pseudoalteromonas haloplanktis TAC12, and Escherichia coli B7A. |
| >PRK07667 uridine kinase; Provisional | Back alignment and domain information |
|---|
Probab=99.05 E-value=4.9e-09 Score=91.28 Aligned_cols=167 Identities=17% Similarity=0.248 Sum_probs=102.8
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCCCCeEEEEecCCCCCCcccCCcccChHHHHHhcCCCC-
Q 021362 106 VKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPW- 184 (313)
Q Consensus 106 ~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~~~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~~- 184 (313)
..-+|||-|++|||||||.+.|...++ .. ...+.++..|+++..... ....+.+.
T Consensus 16 ~~~iIgI~G~~gsGKStla~~L~~~l~----~~----------~~~~~~i~~Dd~~~~~~~----------~~~~~~~~~ 71 (193)
T PRK07667 16 NRFILGIDGLSRSGKTTFVANLKENMK----QE----------GIPFHIFHIDDYIVERNK----------RYHTGFEEW 71 (193)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHH----hC----------CCcEEEEEcCcccchhhh----------HHhcCCCch
Confidence 346999999999999999999999885 11 123556788876432210 00111110
Q ss_pred ------CccHHHHH-HHHHHhhcCCCccCCCCCCcCCCcchhhhhhccCceEEEEcCCccccChhhHHHHHhhccceEEE
Q 021362 185 ------TFNPLLLL-NCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEKWFI 257 (313)
Q Consensus 185 ------~~~~~~~~-~~l~~l~~~~~~~~~~LSgG~kqRv~ia~al~~~ar~Li~d~~~lllDE~~~~~l~~l~~~~i~v 257 (313)
..+.+.+. .++..+........|.++.-.+.+..-. .....+.++++|+++++ . ..+.++++..|+|
T Consensus 72 ~~~~~~~~d~~~L~~~v~~~L~~~~~i~~P~~d~~~~~~~~~~-~~~~~~~vvIvEG~~l~-~----~~~~~~~d~~v~V 145 (193)
T PRK07667 72 YEYYYLQWDIEWLRQKFFRKLQNETKLTLPFYHDETDTCEMKK-VQIPIVGVIVIEGVFLQ-R----KEWRDFFHYMVYL 145 (193)
T ss_pred hhhhhhhhhHHHHHHHHHHhhcCCCeEEEeeeccccccccccc-eecCCCCEEEEEehhhh-h----hhHHhhceEEEEE
Confidence 12333333 3455565554555666665544433211 11245789999999853 2 3567788999999
Q ss_pred EcChHHHHHHHhhcccccCCchHHHHHHHHhcCCchhH-Hhhh--cccCccEEee
Q 021362 258 EVDLDTAMQRVLKRHISTGKPPDVAKWRIEYNDRPNAE-LIMK--SKKNADLVIK 309 (313)
Q Consensus 258 tHd~~~~~~rv~griv~~G~~~ev~~~~~~~~~~~~~~-~i~~--~~~~ad~ii~ 309 (313)
+-+.+...+|++.|. | .....+..++.+..+ |+.. .+..||+|++
T Consensus 146 ~~~~~~~~~R~~~r~---~----~~~~~~~~r~~~a~~~y~~~~~~~~~ad~i~~ 193 (193)
T PRK07667 146 DCPRETRFLRESEET---Q----KNLSKFKNRYWKAEDYYLETESPKDRADLVIK 193 (193)
T ss_pred ECCHHHHHHHHhccc---H----hHHHHHHHHhHHHHHHHHhhcChHhhCcEEeC
Confidence 999999888776422 2 222345556777777 5443 3888999974
|
|
| >cd03284 ABC_MutS1 MutS1 homolog in eukaryotes | Back alignment and domain information |
|---|
Probab=99.03 E-value=6.7e-10 Score=98.48 Aligned_cols=35 Identities=26% Similarity=0.245 Sum_probs=32.4
Q ss_pred cccccccccCCCcEEEEECCCCCcHHHHHHHHHHHh
Q 021362 96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRI 131 (313)
Q Consensus 96 ~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~ 131 (313)
+.+|++|++.+ ++++|.||||+|||||+|+|+++.
T Consensus 20 v~n~~~l~~~~-~~~~l~Gpn~sGKstllr~i~~~~ 54 (216)
T cd03284 20 VPNDTELDPER-QILLITGPNMAGKSTYLRQVALIA 54 (216)
T ss_pred EeeeEEecCCc-eEEEEECCCCCChHHHHHHHHHHH
Confidence 78999999887 999999999999999999998765
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam |
| >cd03242 ABC_RecF RecF is a recombinational DNA repair ATPase that maintains replication in the presence of DNA damage | Back alignment and domain information |
|---|
Probab=99.03 E-value=8.8e-10 Score=100.95 Aligned_cols=59 Identities=14% Similarity=0.091 Sum_probs=45.8
Q ss_pred CCCCCcCCCcchhhhhhc---------cCceEEEEcCCccccChhhHHHHHhhcc---ceEEEEcChHHHH
Q 021362 207 PSFDHGVGDPVEDDILVG---------LQHKVVIVDGNYLFLDGGVWKDVSSMFD---EKWFIEVDLDTAM 265 (313)
Q Consensus 207 ~~LSgG~kqRv~ia~al~---------~~ar~Li~d~~~lllDE~~~~~l~~l~~---~~i~vtHd~~~~~ 265 (313)
..+|+||+|+++++++++ ..+.++++|++...||+...+.+.+... ..++++|+.+.+.
T Consensus 182 ~~lS~Gq~~~~~la~~la~~~~~~~~~~~~~illlDEp~a~LD~~~~~~l~~~l~~~~q~ii~~~~~~~~~ 252 (270)
T cd03242 182 DFGSQGQQRTLALALKLAEIQLIKEVSGEYPVLLLDDVLAELDLGRQAALLDAIEGRVQTFVTTTDLADFD 252 (270)
T ss_pred HhCChHHHHHHHHHHHHHHHHHHHHhhCCCcEEEEcCcchhcCHHHHHHHHHHhhcCCCEEEEeCCchhcc
Confidence 368999999999999875 6889999999999999955444444432 4678888776654
|
When replication is prematurely disrupted by DNA damage, several recF pathway gene products play critical roles processing the arrested replication fork, allowing it to resume and complete its task. This CD represents the nucleotide binding domain of RecF. RecF belongs to a large superfamily of ABC transporters involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases with a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes | Back alignment and domain information |
|---|
Probab=99.02 E-value=2.3e-09 Score=95.39 Aligned_cols=46 Identities=20% Similarity=0.138 Sum_probs=40.9
Q ss_pred cccccccccCCCcEEEEECCCCCcHHHHHHHHHH-HhcccCCCCceeecC
Q 021362 96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVR-RINKIWPQKASSFDS 144 (313)
Q Consensus 96 ~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~g-l~~~~~p~~G~i~~~ 144 (313)
+.+|++|++.+|++++|.||||+||||++++|++ .+. ++.|...+.
T Consensus 20 v~n~i~~~~~~g~~~~itG~N~~GKStll~~i~~~~~l---a~~G~~v~a 66 (222)
T cd03287 20 VPNDIHLSAEGGYCQIITGPNMGGKSSYIRQVALITIM---AQIGSFVPA 66 (222)
T ss_pred EEEeEEEEecCCcEEEEECCCCCCHHHHHHHHHHHHHH---HhCCCEEEc
Confidence 7899999999999999999999999999999999 555 788876544
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c |
| >PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated | Back alignment and domain information |
|---|
Probab=98.99 E-value=7.4e-10 Score=108.34 Aligned_cols=103 Identities=20% Similarity=0.254 Sum_probs=70.8
Q ss_pred cccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCCCCeEEEEecCCCCCCcccCCcccChHH
Q 021362 96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKE 175 (313)
Q Consensus 96 ~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~~~~i~~v~qd~~~~~~~~ltv~e~~~~ 175 (313)
++++.++.+.+|.+++|+||||+||||++..|++.+. ...|. ..++++.+|.+ ..+++|++.+
T Consensus 245 ~~~~~~~~~~~g~Vi~LvGpnGvGKTTTiaKLA~~~~---~~~G~---------~kV~LI~~Dt~-----RigA~EQLr~ 307 (484)
T PRK06995 245 VLDSEDALLDRGGVFALMGPTGVGKTTTTAKLAARCV---MRHGA---------SKVALLTTDSY-----RIGGHEQLRI 307 (484)
T ss_pred hccCccccccCCcEEEEECCCCccHHHHHHHHHHHHH---HhcCC---------CeEEEEeCCcc-----chhHHHHHHH
Confidence 5667777888999999999999999999999999886 55442 24788999864 2688999999
Q ss_pred HHHhcCCCCCcc--HHHHHHHHHHhhcCCCccCCCCCCcCCCcc
Q 021362 176 AHARRGAPWTFN--PLLLLNCLKNLRNQGSVYAPSFDHGVGDPV 217 (313)
Q Consensus 176 ~~~~~~~~~~~~--~~~~~~~l~~l~~~~~~~~~~LSgG~kqRv 217 (313)
+...++.+.... .......+..+.......+.+ .|+.|+.
T Consensus 308 ~AeilGVpv~~~~~~~Dl~~aL~~L~d~d~VLIDT--aGr~~~d 349 (484)
T PRK06995 308 YGKILGVPVHAVKDAADLRLALSELRNKHIVLIDT--IGMSQRD 349 (484)
T ss_pred HHHHhCCCeeccCCchhHHHHHHhccCCCeEEeCC--CCcChhh
Confidence 888877664322 222222333333444455556 4544443
|
|
| >TIGR01069 mutS2 MutS2 family protein | Back alignment and domain information |
|---|
Probab=98.97 E-value=3.2e-10 Score=117.27 Aligned_cols=127 Identities=9% Similarity=0.065 Sum_probs=78.8
Q ss_pred cccccCCC-cEEEEECCCCCcHHHHHHHHHHH-hcccCCCCceeecCCCCCCCeEEEEecCCCCCCcccCCcccChHHHH
Q 021362 100 LASNVNVK-HIVGLAGPPGAGKSTLAAEVVRR-INKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAH 177 (313)
Q Consensus 100 vsl~i~~G-eiv~l~GpNGsGKSTLlk~l~gl-~~~~~p~~G~i~~~g~~~~~~i~~v~qd~~~~~~~~ltv~e~~~~~~ 177 (313)
+|+++..+ ++++|.||||+|||||+|+|+|. +. +..| .++|...... +..++++.
T Consensus 314 ~di~l~~~~~~liItGpNg~GKSTlLK~i~~~~l~---aq~G-------------~~Vpa~~~~~----~~~~d~i~--- 370 (771)
T TIGR01069 314 FTLNLKFEKRVLAITGPNTGGKTVTLKTLGLLALM---FQSG-------------IPIPANEHSE----IPYFEEIF--- 370 (771)
T ss_pred ceeEeCCCceEEEEECCCCCCchHHHHHHHHHHHH---HHhC-------------CCccCCcccc----ccchhhee---
Confidence 67888877 89999999999999999999998 33 4443 1233321100 11111110
Q ss_pred HhcCCCCCccHHHHHHHHHHhhcCCCccCCCCCCcCCCcchhhhhhccCceEEEEcCCccccCh----hh-HHHHHhhcc
Q 021362 178 ARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDG----GV-WKDVSSMFD 252 (313)
Q Consensus 178 ~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~LSgG~kqRv~ia~al~~~ar~Li~d~~~lllDE----~~-~~~l~~l~~ 252 (313)
.... +.+.+ .....+||+||++++.+...+ ..+.++++|++...+|+ .+ +..+..+.+
T Consensus 371 --~~i~---~~~si-----------~~~LStfS~~m~~~~~il~~~-~~~sLvLlDE~g~GtD~~eg~ala~aiLe~l~~ 433 (771)
T TIGR01069 371 --ADIG---DEQSI-----------EQNLSTFSGHMKNISAILSKT-TENSLVLFDELGAGTDPDEGSALAISILEYLLK 433 (771)
T ss_pred --eecC---hHhHH-----------hhhhhHHHHHHHHHHHHHHhc-CCCcEEEecCCCCCCCHHHHHHHHHHHHHHHHh
Confidence 0000 01111 123557899999988886654 56788899999999988 22 233344332
Q ss_pred ---ceEEEEcChHHHHH
Q 021362 253 ---EKWFIEVDLDTAMQ 266 (313)
Q Consensus 253 ---~~i~vtHd~~~~~~ 266 (313)
..+++||+.++...
T Consensus 434 ~g~~viitTH~~eL~~~ 450 (771)
T TIGR01069 434 QNAQVLITTHYKELKAL 450 (771)
T ss_pred cCCEEEEECChHHHHHH
Confidence 24799999987543
|
Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function. |
| >smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family | Back alignment and domain information |
|---|
Probab=98.94 E-value=1.9e-10 Score=99.47 Aligned_cols=61 Identities=7% Similarity=-0.081 Sum_probs=39.5
Q ss_pred ccCCCCCCcCCCcchhhhhhccCceEEEEcCCccccChh----h-HHHHHhhcc----ceEEEEcChHHHH
Q 021362 204 VYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGG----V-WKDVSSMFD----EKWFIEVDLDTAM 265 (313)
Q Consensus 204 ~~~~~LSgG~kqRv~ia~al~~~ar~Li~d~~~lllDE~----~-~~~l~~l~~----~~i~vtHd~~~~~ 265 (313)
....+||+|++|...+.. .+.+++++++|++...+|+. + +..++.+.+ ..+++||+.+...
T Consensus 57 ~~~s~fs~~~~~l~~~l~-~~~~~~llllDEp~~g~d~~~~~~~~~~~l~~l~~~~~~~iii~TH~~~l~~ 126 (185)
T smart00534 57 QGLSTFMVEMKETANILK-NATENSLVLLDELGRGTSTYDGVAIAAAVLEYLLEKIGALTLFATHYHELTK 126 (185)
T ss_pred ccccHHHHHHHHHHHHHH-hCCCCeEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEEEecHHHHHH
Confidence 345578888876444322 23478999999999999982 2 233344432 2479999997544
|
|
| >cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase | Back alignment and domain information |
|---|
Probab=98.90 E-value=5.2e-09 Score=94.63 Aligned_cols=57 Identities=9% Similarity=0.079 Sum_probs=43.2
Q ss_pred CCCCcC--------CCcchhhhhhccCceEEEEcCCccccC---h---hhHHHHHhhccceEEEEcChHHHHH
Q 021362 208 SFDHGV--------GDPVEDDILVGLQHKVVIVDGNYLFLD---G---GVWKDVSSMFDEKWFIEVDLDTAMQ 266 (313)
Q Consensus 208 ~LSgG~--------kqRv~ia~al~~~ar~Li~d~~~lllD---E---~~~~~l~~l~~~~i~vtHd~~~~~~ 266 (313)
.+|||+ +||+++|+++..++.+.++ .+.++| | -+.+.++...+..|+++|++.....
T Consensus 129 ~~sgG~~~~~~~~~~q~~~~Ar~~~~~gsIt~l--~T~~~d~~~~~~~~i~~~~~~~~~~~ivls~~la~~~~ 199 (249)
T cd01128 129 ILSGGVDANALHKPKRFFGAARNIEEGGSLTII--ATALVDTGSRMDDVIFEEFKGTGNMELVLDRRLAERRI 199 (249)
T ss_pred CCCCCcChhhhhhhHHHHHHhcCCCCCCceEEe--eeheecCCCcccchHHHHHhcCCCcEEEEchHHhhCCC
Confidence 469999 9999999998788999888 777777 2 2234444444556899999888765
|
It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain. |
| >cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases | Back alignment and domain information |
|---|
Probab=98.90 E-value=2.5e-09 Score=92.54 Aligned_cols=47 Identities=21% Similarity=0.268 Sum_probs=41.6
Q ss_pred ccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCC
Q 021362 97 TSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQV 146 (313)
Q Consensus 97 L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~ 146 (313)
.+=+.+.+++|+.++|+||||||||||+++|+|+++ |+.|.+.+.+.
T Consensus 15 ~~~l~~~v~~g~~i~I~G~tGSGKTTll~aL~~~i~---~~~~~i~ied~ 61 (186)
T cd01130 15 AAYLWLAVEARKNILISGGTGSGKTTLLNALLAFIP---PDERIITIEDT 61 (186)
T ss_pred HHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhcC---CCCCEEEECCc
Confidence 444567899999999999999999999999999998 99999888763
|
The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase. |
| >PF02463 SMC_N: RecF/RecN/SMC N terminal domain; InterPro: IPR003395 This domain is found at the N terminus of structural maintenance of chromosomes (SMC) proteins, which function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair and epigenetic silencing of gene expression [] | Back alignment and domain information |
|---|
Probab=98.86 E-value=1.5e-09 Score=96.02 Aligned_cols=59 Identities=12% Similarity=0.036 Sum_probs=40.6
Q ss_pred CCCCcCCCcchhhhhhc----cCceEEEEcCCccccCh----hhHHHHHhhc--cceEEEEcChHHHHH
Q 021362 208 SFDHGVGDPVEDDILVG----LQHKVVIVDGNYLFLDG----GVWKDVSSMF--DEKWFIEVDLDTAMQ 266 (313)
Q Consensus 208 ~LSgG~kqRv~ia~al~----~~ar~Li~d~~~lllDE----~~~~~l~~l~--~~~i~vtHd~~~~~~ 266 (313)
.||||||.+++||..++ .+..++++|+...-||+ .+.+.|.++. .+.|++||+......
T Consensus 136 ~lSgGEk~~~~Lal~lA~~~~~~~p~~ilDEvd~~LD~~~~~~l~~~l~~~~~~~Q~ii~Th~~~~~~~ 204 (220)
T PF02463_consen 136 FLSGGEKSLVALALLLALQRYKPSPFLILDEVDAALDEQNRKRLADLLKELSKQSQFIITTHNPEMFED 204 (220)
T ss_dssp GS-HHHHHHHHHHHHHHHHTCS--SEEEEESTTTTS-HHHHHHHHHHHHHHTTTSEEEEE-S-HHHHTT
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 99999999999976654 45667778888888887 5666777776 356899999887654
|
The domain is also found in RecF and RecN proteins, which are involved in DNA metabolism and recombination.; PDB: 3HTK_A 1W1W_C 2WD5_A 3L51_A 1XEW_Y 3KTA_B 3NWC_B 1XEX_A 1GXL_C 1GXK_A .... |
| >TIGR02788 VirB11 P-type DNA transfer ATPase VirB11 | Back alignment and domain information |
|---|
Probab=98.85 E-value=1.3e-08 Score=95.02 Aligned_cols=41 Identities=20% Similarity=0.268 Sum_probs=35.9
Q ss_pred cccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeec
Q 021362 100 LASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFD 143 (313)
Q Consensus 100 vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~ 143 (313)
+++.+..|+.++|+||+|||||||+++|+++++ ++.|.+.+
T Consensus 137 l~~~v~~~~~ili~G~tGsGKTTll~al~~~~~---~~~~iv~i 177 (308)
T TIGR02788 137 LRLAIASRKNIIISGGTGSGKTTFLKSLVDEIP---KDERIITI 177 (308)
T ss_pred HHHHhhCCCEEEEECCCCCCHHHHHHHHHccCC---ccccEEEE
Confidence 678899999999999999999999999999997 66665544
|
The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA. |
| >KOG0063 consensus RNAse L inhibitor, ABC superfamily [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.85 E-value=1.2e-09 Score=103.18 Aligned_cols=158 Identities=16% Similarity=0.090 Sum_probs=95.2
Q ss_pred CCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCCCCeEEEE----ecCCCCCC-cccC---CcccChHH-
Q 021362 105 NVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVL----PMDGFHLY-LSQL---DAMEDPKE- 175 (313)
Q Consensus 105 ~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~~~~i~~v----~qd~~~~~-~~~l---tv~e~~~~- 175 (313)
.+|++.|++|-||-||||-+++++|-++ |.-|.... +.+....++|. -|..+.-. ...+ .-.+.+..
T Consensus 98 rpg~vlglvgtngigkstAlkilagk~k---pnlg~~~~-pp~w~~il~~frgselq~yftk~le~~lk~~~kpQyvd~i 173 (592)
T KOG0063|consen 98 RPGQVLGLVGTNGIGKSTALKILAGKQK---PNLGRYDN-PPDWQEILTYFRGSELQNYFTKILEDNLKAIIKPQYVDQI 173 (592)
T ss_pred CcchhccccccCcccHHHHHHHHhCCCC---CCCCCCCC-CcchHHHhhhhhhHHHhhhhhhhccccccCcCChHHHHHH
Confidence 5899999999999999999999999998 87765321 00000111110 01100000 0000 00111111
Q ss_pred HHHhcC-----CCCCccHHHHHHHHHHhh--cCCCccCCCCCCcCCCcchhhhhhccCceEEEEcCCccccCh----hhH
Q 021362 176 AHARRG-----APWTFNPLLLLNCLKNLR--NQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDG----GVW 244 (313)
Q Consensus 176 ~~~~~~-----~~~~~~~~~~~~~l~~l~--~~~~~~~~~LSgG~kqRv~ia~al~~~ar~Li~d~~~lllDE----~~~ 244 (313)
+....+ .....+.+...++++.+. ...++.+.+||||+.||.+||++.+..|++.++|++=--||- ...
T Consensus 174 pr~~k~~v~~~l~~~~~r~~~~~~~~~~~L~~~~~re~~~lsggelqrfaia~~~vq~advyMFDEpSsYLDVKQRLkaA 253 (592)
T KOG0063|consen 174 PRAVKGTVGSLLDRKDERDNKEEVCDQLDLNNLLDREVEQLSGGELQRFAIAMVCVQKADVYMFDEPSSYLDVKQRLKAA 253 (592)
T ss_pred HHHHHHHHHHHHHHHhhcccHHHHHHHHHHhhHHHhhhhhcccchhhhhhhhhhhhhhcceeEecCCcccchHHHhhhHH
Confidence 111111 001111122333444333 456778889999999999999999999999999999999987 344
Q ss_pred HHHHhhcc---ceEEEEcChHHHHH
Q 021362 245 KDVSSMFD---EKWFIEVDLDTAMQ 266 (313)
Q Consensus 245 ~~l~~l~~---~~i~vtHd~~~~~~ 266 (313)
..|+.+.. .+|+|.||++....
T Consensus 254 ~~IRsl~~p~~YiIVVEHDLsVLDy 278 (592)
T KOG0063|consen 254 ITIRSLINPDRYIIVVEHDLSVLDY 278 (592)
T ss_pred HHHHHhhCCCCeEEEEEeechHHHh
Confidence 45555543 36899999998876
|
|
| >PLN03046 D-glycerate 3-kinase; Provisional | Back alignment and domain information |
|---|
Probab=98.84 E-value=4.5e-08 Score=93.53 Aligned_cols=179 Identities=18% Similarity=0.197 Sum_probs=102.1
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCCCCeEEEEecCCCCCCcccCC-cc-cChHH-HHHhcCC
Q 021362 106 VKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLD-AM-EDPKE-AHARRGA 182 (313)
Q Consensus 106 ~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~~~~i~~v~qd~~~~~~~~lt-v~-e~~~~-~~~~~~~ 182 (313)
+.-++||.|++|||||||++.|.++++ +. | ..++.+.+|++++...... .. +|..- .+..+|.
T Consensus 211 ~PlIIGIsG~qGSGKSTLa~~L~~lL~---~~-g----------~~vgvISiDDfYLt~eer~kL~~~nP~n~LL~~RG~ 276 (460)
T PLN03046 211 PPLVIGFSAPQGCGKTTLVFALDYLFR---VT-G----------RKSATLSIDDFYLTAEGQAELRERNPGNALLELRGN 276 (460)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHhc---cc-C----------CceEEEEECCccCChHHHHHHHhhCccchhhcccCC
Confidence 347999999999999999999999996 43 1 2356688887764321110 00 01000 1123455
Q ss_pred CCCccHHHHHHHHHHhh----cCCCccCCCCC----CcCCCcchhh--hhhccCceEEEEcCCccccCh-----------
Q 021362 183 PWTFNPLLLLNCLKNLR----NQGSVYAPSFD----HGVGDPVEDD--ILVGLQHKVVIVDGNYLFLDG----------- 241 (313)
Q Consensus 183 ~~~~~~~~~~~~l~~l~----~~~~~~~~~LS----gG~kqRv~ia--~al~~~ar~Li~d~~~lllDE----------- 241 (313)
|...+.....+.++.+. .+....+|.|+ .|+..|+.-. ..+..+++++|+|+-++++-+
T Consensus 277 PGTHDv~Lg~e~L~~L~~~lk~G~~V~iP~YDKs~h~GrgDR~~~~~W~~v~~P~DVIIfEGW~vG~~P~~~~~l~~~D~ 356 (460)
T PLN03046 277 AGSHDLQFSVETLEALSKLTKEGIKMKVPRYDKSAYSGRGDRADPSTWPEVEGPLEVILFEGWMLGFKPLPNEVVKAVDP 356 (460)
T ss_pred CccccHhhHHHHHHHHHHHhhCCCeeecCCCCccccCCCCCCcCcccceeecCCCCEEEEcCHHhCCCCCChHHhhccCh
Confidence 66777766666666663 34445666554 3455675432 223456899999999888843
Q ss_pred ---hhHHHHHhh-------ccceE-EEEcChHHHHHHHh---hcccc---cCCchHHHHHHHHhcCCchhHHhhh
Q 021362 242 ---GVWKDVSSM-------FDEKW-FIEVDLDTAMQRVL---KRHIS---TGKPPDVAKWRIEYNDRPNAELIMK 299 (313)
Q Consensus 242 ---~~~~~l~~l-------~~~~i-~vtHd~~~~~~rv~---griv~---~G~~~ev~~~~~~~~~~~~~~~i~~ 299 (313)
.+-+.|... .+.-+ +-.-|.+.+.++.. .+... .|-.++-+.+ +-..++|..+.+.+
T Consensus 357 ~l~~VN~~L~~Y~~~w~~~~D~li~L~a~d~~~Vy~WRlqQE~kLr~~gg~GMsdeqV~~-FV~~YmPaY~~y~~ 430 (460)
T PLN03046 357 QLEVVNKNLEAYYDAWDKFIDAWVVIKIQDPSCVYQWRLQAEIAMRADGKPGMSDEEVMD-FVSRYLPAYKAYLP 430 (460)
T ss_pred hHHHHHHHHHHHHHHHHHhhceeEEeeCCChhHHHHHHHHHHHHHHHcCCCCCCHHHHHH-HHHHhhhHHHHHHH
Confidence 111222222 11212 34577788877333 22222 2444444444 66688898884333
|
|
| >PRK06002 fliI flagellum-specific ATP synthase; Validated | Back alignment and domain information |
|---|
Probab=98.84 E-value=6.5e-09 Score=100.63 Aligned_cols=79 Identities=14% Similarity=0.077 Sum_probs=65.2
Q ss_pred ccEEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCC---CC----
Q 021362 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQ---VK---- 147 (313)
Q Consensus 75 m~~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g---~~---- 147 (313)
.+.++.+++++.|... +.+++.++ .|.+|++++|+||||||||||+++|+++.+ |+.|.|.+.| .+
T Consensus 137 p~~~~r~~v~~~l~TG---i~aID~L~-~I~~Gqri~I~G~SGsGKTTLL~~Ia~l~~---pd~gvv~liGergrev~e~ 209 (450)
T PRK06002 137 PPAMTRARVETGLRTG---VRVIDIFT-PLCAGQRIGIFAGSGVGKSTLLAMLARADA---FDTVVIALVGERGREVREF 209 (450)
T ss_pred CCCeEeecceEEcCCC---cEEeeeec-eecCCcEEEEECCCCCCHHHHHHHHhCCCC---CCeeeeeecccCCccHHHH
Confidence 3478999999999643 23888885 999999999999999999999999999998 9999887754 22
Q ss_pred --------CCCeEEEEecCCC
Q 021362 148 --------PPDVATVLPMDGF 160 (313)
Q Consensus 148 --------~~~~i~~v~qd~~ 160 (313)
+.+.+++++|.+.
T Consensus 210 ~~~~l~~~r~rtI~vV~qsd~ 230 (450)
T PRK06002 210 LEDTLADNLKKAVAVVATSDE 230 (450)
T ss_pred hHHHHHHhhCCeEEEEEcCCC
Confidence 2346899999854
|
|
| >PRK00349 uvrA excinuclease ABC subunit A; Reviewed | Back alignment and domain information |
|---|
Probab=98.82 E-value=2.1e-09 Score=112.93 Aligned_cols=90 Identities=17% Similarity=0.193 Sum_probs=72.1
Q ss_pred HHHHhhcC---CCccCCCCCCcCCCcchhhhhhccCc--eEEEEcCCccccCh----hhHHHHHhhccc---eEEEEcCh
Q 021362 194 CLKNLRNQ---GSVYAPSFDHGVGDPVEDDILVGLQH--KVVIVDGNYLFLDG----GVWKDVSSMFDE---KWFIEVDL 261 (313)
Q Consensus 194 ~l~~l~~~---~~~~~~~LSgG~kqRv~ia~al~~~a--r~Li~d~~~lllDE----~~~~~l~~l~~~---~i~vtHd~ 261 (313)
.|+.++.. .++.+.+|||||+|||+||++++..+ .++++|+|+..||+ .+++.|+++.+. +|+|+||+
T Consensus 472 ~L~~vGL~~l~l~r~~~~LSgGE~QRv~LA~aL~~~~~~~llILDEPtagLd~~~~~~L~~~L~~L~~~G~TVIvVeH~~ 551 (943)
T PRK00349 472 FLVDVGLDYLTLSRSAGTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNDRLIETLKHLRDLGNTLIVVEHDE 551 (943)
T ss_pred HhhccccCCCCCCCchhhCCHHHHHHHHHHHHHhhCCCCcEEEecCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCH
Confidence 45555543 46788899999999999999999886 89999999999999 556666666543 47999999
Q ss_pred HHHHH--HHh----------hcccccCCchHHHH
Q 021362 262 DTAMQ--RVL----------KRHISTGKPPDVAK 283 (313)
Q Consensus 262 ~~~~~--rv~----------griv~~G~~~ev~~ 283 (313)
+++.. |++ |++++.|+++++..
T Consensus 552 ~~i~~aD~vi~LgpgaG~~~G~iv~~g~~~e~~~ 585 (943)
T PRK00349 552 DTIRAADYIVDIGPGAGVHGGEVVASGTPEEIMK 585 (943)
T ss_pred HHHHhCCEEEEeccccCCCCCEEeeccCHHHHhc
Confidence 99865 544 58889999888754
|
|
| >PRK08233 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.78 E-value=1.5e-07 Score=80.29 Aligned_cols=80 Identities=25% Similarity=0.366 Sum_probs=49.1
Q ss_pred eEEEEcCCccccChhhHHHHHhhccceEEEEcChHHHHHHHhhcccccCCchHHH--HHHHHhcCCchhH-HhhhcccCc
Q 021362 228 KVVIVDGNYLFLDGGVWKDVSSMFDEKWFIEVDLDTAMQRVLKRHISTGKPPDVA--KWRIEYNDRPNAE-LIMKSKKNA 304 (313)
Q Consensus 228 r~Li~d~~~lllDE~~~~~l~~l~~~~i~vtHd~~~~~~rv~griv~~G~~~ev~--~~~~~~~~~~~~~-~i~~~~~~a 304 (313)
.+++.|.++..+. +.+.+..+..|+++.+.+....|++.|.......+++. .+.|....+|.+. ++.+.+..|
T Consensus 79 ~~vivd~~~~~~~----~~~~~~~d~~i~l~~~~~~~~~R~~~R~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~ 154 (182)
T PRK08233 79 DYIIVDYPFAYLN----SEMRQFIDVTIFIDTPLDIAMARRILRDFKEDTGNEIHNDLKHYLNYARPLYLEALHTVKPNA 154 (182)
T ss_pred eEEEEeeehhhcc----HHHHHHcCEEEEEcCCHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHHHhhcCccCC
Confidence 5677887766554 34666778889999999998887775543322222232 1223333444443 455556678
Q ss_pred cEEeecC
Q 021362 305 DLVIKSI 311 (313)
Q Consensus 305 d~ii~~~ 311 (313)
+++|++.
T Consensus 155 ~~vId~~ 161 (182)
T PRK08233 155 DIVLDGA 161 (182)
T ss_pred eEEEcCC
Confidence 9988753
|
|
| >cd03286 ABC_MSH6_euk MutS6 homolog in eukaryotes | Back alignment and domain information |
|---|
Probab=98.73 E-value=3.7e-08 Score=87.42 Aligned_cols=36 Identities=28% Similarity=0.335 Sum_probs=34.4
Q ss_pred cccccccccCCCcEEEEECCCCCcHHHHHHHHHHHh
Q 021362 96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRI 131 (313)
Q Consensus 96 ~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~ 131 (313)
+-+|++|++++|++++|.||||+||||+++++++..
T Consensus 19 v~ndi~l~~~~~~~~~itG~n~~gKs~~l~~i~~~~ 54 (218)
T cd03286 19 VPNDVDLGATSPRILVLTGPNMGGKSTLLRTVCLAV 54 (218)
T ss_pred EEeeeEEeecCCcEEEEECCCCCchHHHHHHHHHHH
Confidence 789999999999999999999999999999999875
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c |
| >PRK06547 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.72 E-value=1.7e-07 Score=80.22 Aligned_cols=151 Identities=13% Similarity=0.050 Sum_probs=85.5
Q ss_pred CCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCCCCeEEEEecCCCCCCcccCCcccChHHHHHhcCCCC
Q 021362 105 NVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPW 184 (313)
Q Consensus 105 ~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~~~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~~ 184 (313)
..-.+++|.|++|||||||.+.|+..+. +.++.+|.++... +.+ +
T Consensus 13 ~~~~~i~i~G~~GsGKTt~a~~l~~~~~-------------------~~~~~~d~~~~~~------~~~---------~- 57 (172)
T PRK06547 13 GGMITVLIDGRSGSGKTTLAGALAARTG-------------------FQLVHLDDLYPGW------HGL---------A- 57 (172)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhC-------------------CCeecccceeccc------ccC---------C-
Confidence 4456899999999999999999998763 2346666543211 110 0
Q ss_pred CccHHHHHHHHHHhhcCCCccCCCCCCcCCCcchhhhhhccCceEEEEcCCccccChhhHHHHHhhcc-----ceEEEEc
Q 021362 185 TFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFD-----EKWFIEV 259 (313)
Q Consensus 185 ~~~~~~~~~~l~~l~~~~~~~~~~LSgG~kqRv~ia~al~~~ar~Li~d~~~lllDE~~~~~l~~l~~-----~~i~vtH 259 (313)
...+.+.+.+..-+ .....+ ++.-...+... .......+++.++-..+.+ .++++.+ ..|+++-
T Consensus 58 -~~~~~l~~~~l~~g--~~~~~~-yd~~~~~~~~~--~~l~~~~vVIvEG~~al~~-----~~r~~~d~~g~v~~I~ld~ 126 (172)
T PRK06547 58 -AASEHVAEAVLDEG--RPGRWR-WDWANNRPGDW--VSVEPGRRLIIEGVGSLTA-----ANVALASLLGEVLTVWLDG 126 (172)
T ss_pred -hHHHHHHHHHHhCC--CCceec-CCCCCCCCCCc--EEeCCCCeEEEEehhhccH-----HHHHHhccCCCEEEEEEEC
Confidence 01122222222211 111111 22111111111 1223356888888777654 3455555 5689999
Q ss_pred ChHHHHHHHhhcccccCCchHHHHHHHHhcCCchhH-Hhhh--cccCccEEee
Q 021362 260 DLDTAMQRVLKRHISTGKPPDVAKWRIEYNDRPNAE-LIMK--SKKNADLVIK 309 (313)
Q Consensus 260 d~~~~~~rv~griv~~G~~~ev~~~~~~~~~~~~~~-~i~~--~~~~ad~ii~ 309 (313)
+.+....|++.|. |. . ..+...+.+.++ |+.. .+..||+++.
T Consensus 127 ~~~vr~~R~~~Rd---~~----~-~~~~~~w~~~e~~~~~~~~~~~~ad~~~~ 171 (172)
T PRK06547 127 PEALRKERALARD---PD----Y-APHWEMWAAQEERHFARYDPRDVADWLGS 171 (172)
T ss_pred CHHHHHHHHHhcC---ch----h-hHHHHHHHHHHHHHHhcCCChhccEEEec
Confidence 9999999888775 22 2 223356778888 4433 3899999874
|
|
| >PRK07721 fliI flagellum-specific ATP synthase; Validated | Back alignment and domain information |
|---|
Probab=98.72 E-value=3.2e-08 Score=96.24 Aligned_cols=47 Identities=23% Similarity=0.213 Sum_probs=44.0
Q ss_pred cccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCC
Q 021362 96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQV 146 (313)
Q Consensus 96 ~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~ 146 (313)
+++++ |.+.+|++++|+|+||+|||||+++|+|+.+ |+.|.|.+.|+
T Consensus 148 vid~l-~~i~~Gq~i~I~G~sG~GKStLl~~I~~~~~---~~~gvI~~~Ge 194 (438)
T PRK07721 148 AIDSL-LTVGKGQRVGIFAGSGVGKSTLMGMIARNTS---ADLNVIALIGE 194 (438)
T ss_pred hhhee-eeecCCcEEEEECCCCCCHHHHHHHHhcccC---CCeEEEEEEec
Confidence 89999 9999999999999999999999999999998 99999887554
|
|
| >PRK00064 recF recombination protein F; Reviewed | Back alignment and domain information |
|---|
Probab=98.70 E-value=3.9e-08 Score=93.74 Aligned_cols=59 Identities=12% Similarity=0.091 Sum_probs=46.2
Q ss_pred CCCCCcCCCcchhhhhhc---------cCceEEEEcCCccccChhhHHHHHhhc----cceEEEEcChHHHH
Q 021362 207 PSFDHGVGDPVEDDILVG---------LQHKVVIVDGNYLFLDGGVWKDVSSMF----DEKWFIEVDLDTAM 265 (313)
Q Consensus 207 ~~LSgG~kqRv~ia~al~---------~~ar~Li~d~~~lllDE~~~~~l~~l~----~~~i~vtHd~~~~~ 265 (313)
..+|.||++++.+|+.++ ..+.++++|+++.-||+.-.+.+.++. ...++++|+.+...
T Consensus 272 ~~~S~Gq~~~~~lal~la~~~~~~~~~~~~~ilLlDd~~s~LD~~~~~~l~~~l~~~~~qv~it~~~~~~~~ 343 (361)
T PRK00064 272 DFGSTGQQKLLLLALKLAEAELLKEETGEAPILLLDDVASELDDGRRAALLERLKGLGAQVFITTTDLEDLA 343 (361)
T ss_pred HhCChHHHHHHHHHHHHHHHHHHHHhhCCCCEEEEccchhhhCHHHHHHHHHHHhccCCEEEEEcCChhhhh
Confidence 489999999999999885 689999999999999995444444433 34578889887653
|
|
| >TIGR00630 uvra excinuclease ABC, A subunit | Back alignment and domain information |
|---|
Probab=98.68 E-value=1.5e-08 Score=106.31 Aligned_cols=82 Identities=16% Similarity=0.181 Sum_probs=67.0
Q ss_pred CCccCCCCCCcCCCcchhhhhhccCc--eEEEEcCCccccCh----hhHHHHHhhccc---eEEEEcChHHHHH--HHh-
Q 021362 202 GSVYAPSFDHGVGDPVEDDILVGLQH--KVVIVDGNYLFLDG----GVWKDVSSMFDE---KWFIEVDLDTAMQ--RVL- 269 (313)
Q Consensus 202 ~~~~~~~LSgG~kqRv~ia~al~~~a--r~Li~d~~~lllDE----~~~~~l~~l~~~---~i~vtHd~~~~~~--rv~- 269 (313)
.++.+.+|||||+||+.||++++.++ .++++|+|+..||+ .+++.|+++.+. +|+|+||++++.. |++
T Consensus 481 l~r~~~tLSGGE~QRv~LA~aL~~~~~~~llILDEPtagLD~~~~~~L~~~L~~L~~~G~TVIvVeHd~~~i~~aD~vi~ 560 (924)
T TIGR00630 481 LSRAAGTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNERLINTLKRLRDLGNTVIVVEHDEETIRAADYVID 560 (924)
T ss_pred cCCCcCcCCHHHHHHHHHHHHHhhCCCCcEEEEcCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHhhCCEEEE
Confidence 46778899999999999999999875 89999999999999 556666666543 4799999998865 443
Q ss_pred ---------hcccccCCchHHHH
Q 021362 270 ---------KRHISTGKPPDVAK 283 (313)
Q Consensus 270 ---------griv~~G~~~ev~~ 283 (313)
|++++.|+++++..
T Consensus 561 LgpgaG~~~G~Iv~~g~~~el~~ 583 (924)
T TIGR00630 561 IGPGAGIHGGEVVASGTPEEILA 583 (924)
T ss_pred ecccccCCCCEEeeccCHHHHhc
Confidence 67888999888753
|
This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed | Back alignment and domain information |
|---|
Probab=98.67 E-value=5.9e-09 Score=108.23 Aligned_cols=127 Identities=9% Similarity=0.008 Sum_probs=77.4
Q ss_pred cccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCCCCeEEEEecCCCCCCcccCCcccChHHHH
Q 021362 98 SALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAH 177 (313)
Q Consensus 98 ~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~~~~i~~v~qd~~~~~~~~ltv~e~~~~~~ 177 (313)
+|+++. ..+.++.|.|||++||||+||.++...- .... +.+||-... ..+.+++++..
T Consensus 319 ndi~l~-~~~~~~iITGpN~gGKTt~lktigl~~~--maq~-------------G~~vpa~~~----~~i~~~~~i~~-- 376 (782)
T PRK00409 319 KDISLG-FDKTVLVITGPNTGGKTVTLKTLGLAAL--MAKS-------------GLPIPANEP----SEIPVFKEIFA-- 376 (782)
T ss_pred ceeEEC-CCceEEEEECCCCCCcHHHHHHHHHHHH--HHHh-------------CCCcccCCC----ccccccceEEE--
Confidence 344443 2456899999999999999999976531 0111 123333311 01223333210
Q ss_pred HhcCCCCCccHHHHHHHHHHhhc--CCCccCCCCCCcCCCcchhhhhhccCceEEEEcCCccccCh----hhHH-HHHhh
Q 021362 178 ARRGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDG----GVWK-DVSSM 250 (313)
Q Consensus 178 ~~~~~~~~~~~~~~~~~l~~l~~--~~~~~~~~LSgG~kqRv~ia~al~~~ar~Li~d~~~lllDE----~~~~-~l~~l 250 (313)
.++. .......+||+||+|++.|++++ ..+.++++|++...+|+ .+.. .+..+
T Consensus 377 -------------------~ig~~~si~~~lStfS~~m~~~~~Il~~~-~~~sLvLlDE~~~GtDp~eg~ala~aile~l 436 (782)
T PRK00409 377 -------------------DIGDEQSIEQSLSTFSGHMTNIVRILEKA-DKNSLVLFDELGAGTDPDEGAALAISILEYL 436 (782)
T ss_pred -------------------ecCCccchhhchhHHHHHHHHHHHHHHhC-CcCcEEEecCCCCCCCHHHHHHHHHHHHHHH
Confidence 1111 11234568999999999998776 57788999999999997 2222 23333
Q ss_pred cc---ceEEEEcChHHHHH
Q 021362 251 FD---EKWFIEVDLDTAMQ 266 (313)
Q Consensus 251 ~~---~~i~vtHd~~~~~~ 266 (313)
.+ .++++||+.+++..
T Consensus 437 ~~~~~~vIitTH~~el~~~ 455 (782)
T PRK00409 437 RKRGAKIIATTHYKELKAL 455 (782)
T ss_pred HHCCCEEEEECChHHHHHH
Confidence 22 24799999888765
|
|
| >PRK08533 flagellar accessory protein FlaH; Reviewed | Back alignment and domain information |
|---|
Probab=98.66 E-value=1.6e-07 Score=84.09 Aligned_cols=142 Identities=10% Similarity=0.023 Sum_probs=77.9
Q ss_pred EEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHH-HHHHHHHhcccCCCCceeecCCCCCCCeEEEEe
Q 021362 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTL-AAEVVRRINKIWPQKASSFDSQVKPPDVATVLP 156 (313)
Q Consensus 78 l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTL-lk~l~gl~~~~~p~~G~i~~~g~~~~~~i~~v~ 156 (313)
+.++++++.+++ .+++|+++.|.|+|||||||| ++.++++.+ +. ..+.|+.
T Consensus 8 ~~~~~ld~~l~g-------------gi~~g~~~~i~G~~G~GKTtl~~~~~~~~~~---~g------------~~~~yi~ 59 (230)
T PRK08533 8 LSRDELHKRLGG-------------GIPAGSLILIEGDESTGKSILSQRLAYGFLQ---NG------------YSVSYVS 59 (230)
T ss_pred EEEeeeehhhCC-------------CCCCCcEEEEECCCCCCHHHHHHHHHHHHHh---CC------------CcEEEEe
Confidence 456666666654 268999999999999999999 689998875 22 2344555
Q ss_pred cCCCCCCcccCCcccChHHHHHhcCCCCCccHHHHHHHHHHhhcCCC-ccCCCCCCcCCCcchhhhhhc----cCceEEE
Q 021362 157 MDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQGS-VYAPSFDHGVGDPVEDDILVG----LQHKVVI 231 (313)
Q Consensus 157 qd~~~~~~~~ltv~e~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~-~~~~~LSgG~kqRv~ia~al~----~~ar~Li 231 (313)
.+. +..+.+... ...|.. .+.. ... +.... ...+.+|+++.++..+...+. .+++.++
T Consensus 60 ~e~--------~~~~~~~~~-~~~g~~----~~~~---~~~-~~l~~~~~~~~~~~~~~~~~~l~~il~~~~~~~~~~lV 122 (230)
T PRK08533 60 TQL--------TTTEFIKQM-MSLGYD----INKK---LIS-GKLLYIPVYPLLSGNSEKRKFLKKLMNTRRFYEKDVII 122 (230)
T ss_pred CCC--------CHHHHHHHH-HHhCCc----hHHH---hhc-CcEEEEEecccccChHHHHHHHHHHHHHHHhcCCCEEE
Confidence 331 222222222 112211 1111 000 10000 111345666544433322222 2578899
Q ss_pred EcCCcccc----Ch----hhHHHHHhhccc--eEEEEcChHHH
Q 021362 232 VDGNYLFL----DG----GVWKDVSSMFDE--KWFIEVDLDTA 264 (313)
Q Consensus 232 ~d~~~lll----DE----~~~~~l~~l~~~--~i~vtHd~~~~ 264 (313)
.|++..++ |+ .+++.++.+.+. .+++||+....
T Consensus 123 IDe~t~~l~~~~d~~~~~~l~~~l~~l~~~g~tvi~t~~~~~~ 165 (230)
T PRK08533 123 IDSLSSLISNDASEVAVNDLMAFFKRISSLNKVIILTANPKEL 165 (230)
T ss_pred EECccHHhcCCcchHHHHHHHHHHHHHHhCCCEEEEEeccccc
Confidence 99988877 54 345555544332 57889987754
|
|
| >PRK07196 fliI flagellum-specific ATP synthase; Validated | Back alignment and domain information |
|---|
Probab=98.65 E-value=1.4e-08 Score=98.24 Aligned_cols=80 Identities=20% Similarity=0.183 Sum_probs=59.5
Q ss_pred ccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCce---eecCCCC--------------CCCeEEEEec
Q 021362 95 LPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS---SFDSQVK--------------PPDVATVLPM 157 (313)
Q Consensus 95 ~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~---i~~~g~~--------------~~~~i~~v~q 157 (313)
.+++++ |++.+|++++|+|+||+|||||+++|+|+.+ ++.+. |-.++.+ .+..+++.+|
T Consensus 144 ~aID~l-l~I~~GQ~igI~G~sGaGKSTLl~~I~g~~~---~dv~vig~IGerg~ev~ef~~~~l~~~gl~rsvvv~~~~ 219 (434)
T PRK07196 144 NAINGL-LTIGKGQRVGLMAGSGVGKSVLLGMITRYTQ---ADVVVVGLIGERGREVKEFIEHSLQAAGMAKSVVVAAPA 219 (434)
T ss_pred eeccce-EeEecceEEEEECCCCCCccHHHHHHhcccC---CCeEEEEEEeeecHHHHHHHHHHhhhcccceEEEEEecC
Confidence 399999 9999999999999999999999999999988 77532 2222221 1224788888
Q ss_pred CCCCCCcccCCcccChHHHHHhc
Q 021362 158 DGFHLYLSQLDAMEDPKEAHARR 180 (313)
Q Consensus 158 d~~~~~~~~ltv~e~~~~~~~~~ 180 (313)
+...+. .+++.++.......+
T Consensus 220 d~s~~~--rl~a~e~a~~iAEyf 240 (434)
T PRK07196 220 DESPLM--RIKATELCHAIATYY 240 (434)
T ss_pred CCChhh--hHHHHHHHHHHHHHh
Confidence 855433 377888877665543
|
|
| >COG4240 Predicted kinase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.64 E-value=3.3e-07 Score=80.43 Aligned_cols=121 Identities=31% Similarity=0.488 Sum_probs=87.6
Q ss_pred ccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCCCCeEEEEecCCCCCCcccCCcccChHHH------
Q 021362 103 NVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEA------ 176 (313)
Q Consensus 103 ~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~~~~i~~v~qd~~~~~~~~ltv~e~~~~~------ 176 (313)
+-.+.-|+||.||-|||||||.-.|..++. . .| ..++++++.|++++. -.+.+.+.
T Consensus 46 e~grPli~gisGpQGSGKStls~~i~~~L~---~-kg---------~ert~~lSLDDlYlt-----hadrl~La~q~npl 107 (300)
T COG4240 46 ERGRPLIVGISGPQGSGKSTLSALIVRLLA---A-KG---------LERTATLSLDDLYLT-----HADRLRLARQVNPL 107 (300)
T ss_pred hcCCceEEEeecCCCCchhhHHHHHHHHHH---H-hc---------ccceEEeehhhhhcc-----hHHHHHHHHhcCch
Confidence 345567999999999999999999999885 1 11 024677888877543 33333332
Q ss_pred HHhcCCCCCccHHHHHHHHHHhhc-CCCccCCCCCC----cCCCcchhhhhhccCceEEEEcCCccccCh
Q 021362 177 HARRGAPWTFNPLLLLNCLKNLRN-QGSVYAPSFDH----GVGDPVEDDILVGLQHKVVIVDGNYLFLDG 241 (313)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~l~~l~~-~~~~~~~~LSg----G~kqRv~ia~al~~~ar~Li~d~~~lllDE 241 (313)
+..+|.|.+.|.....++|+.+.. .....+|.|.. |...|.--......+..++|+++-++.+-+
T Consensus 108 lq~RGlpGTHD~tlglnVLnai~~g~~~V~lPrfDKS~f~gagDR~p~~q~ik~~vdivIlEGWfvGfrP 177 (300)
T COG4240 108 LQTRGLPGTHDPTLGLNVLNAIARGGPTVPLPRFDKSAFAGAGDRAPQTQWIKFEVDIVILEGWFVGFRP 177 (300)
T ss_pred hcccCCCCCCchHHHHHHHHHHhcCCCCcccccccchhccCCCCCCCcccceecceeEEEEeeeeeeccc
Confidence 334688999999999999998873 34457778876 888886555555556889999998888766
|
|
| >PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=98.63 E-value=1.2e-07 Score=91.65 Aligned_cols=96 Identities=21% Similarity=0.267 Sum_probs=63.8
Q ss_pred cCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCCCCeEEEEecCCCCCCcccCCcccChHHHHHhcCCC
Q 021362 104 VNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAP 183 (313)
Q Consensus 104 i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~~~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~ 183 (313)
+++|++++|+||||+||||+++.|++... -.. ....++++..|.+. ....+++.......|.+
T Consensus 188 ~~~g~vi~lvGpnG~GKTTtlakLA~~~~---~~~---------~~~~v~~i~~d~~r-----igalEQL~~~a~ilGvp 250 (420)
T PRK14721 188 IEQGGVYALIGPTGVGKTTTTAKLAARAV---IRH---------GADKVALLTTDSYR-----IGGHEQLRIYGKLLGVS 250 (420)
T ss_pred cCCCcEEEEECCCCCCHHHHHHHHHHHHH---Hhc---------CCCeEEEEecCCcc-----hhHHHHHHHHHHHcCCc
Confidence 47899999999999999999999999652 110 11346777777542 35677777777777766
Q ss_pred CC--ccHHHHHHHHHHhhcCCCccCCCCCCcCCCcch
Q 021362 184 WT--FNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVE 218 (313)
Q Consensus 184 ~~--~~~~~~~~~l~~l~~~~~~~~~~LSgG~kqRv~ 218 (313)
.. .+...+...+..+.......+.+ .|+.||..
T Consensus 251 ~~~v~~~~dl~~al~~l~~~d~VLIDT--aGrsqrd~ 285 (420)
T PRK14721 251 VRSIKDIADLQLMLHELRGKHMVLIDT--VGMSQRDQ 285 (420)
T ss_pred eecCCCHHHHHHHHHHhcCCCEEEecC--CCCCcchH
Confidence 42 23334445555555444445554 58888754
|
|
| >PTZ00132 GTP-binding nuclear protein Ran; Provisional | Back alignment and domain information |
|---|
Probab=98.59 E-value=9.7e-09 Score=90.51 Aligned_cols=45 Identities=7% Similarity=-0.087 Sum_probs=35.0
Q ss_pred CCCCCc--CCCcchhhhhhccCceEEEEcCCc-----cccChhhHHHHHhhc
Q 021362 207 PSFDHG--VGDPVEDDILVGLQHKVVIVDGNY-----LFLDGGVWKDVSSMF 251 (313)
Q Consensus 207 ~~LSgG--~kqRv~ia~al~~~ar~Li~d~~~-----lllDE~~~~~l~~l~ 251 (313)
...+|+ +++++.||++++.+++++++|+|+ ..||+...+.+.++.
T Consensus 149 Sa~~~~~v~~~f~~ia~~l~~~p~~~~ldEp~~~~~~~~ld~~~~~~~~~~~ 200 (215)
T PTZ00132 149 SAKSNYNFEKPFLWLARRLTNDPNLVFVGAPALAPEEIQIDPELVAQAEKEL 200 (215)
T ss_pred eCCCCCCHHHHHHHHHHHHhhcccceecCCcccCCCccccCHHHHHHHHHHH
Confidence 345555 777899999999999999999999 999995544444443
|
|
| >PRK06315 type III secretion system ATPase; Provisional | Back alignment and domain information |
|---|
Probab=98.58 E-value=5.7e-08 Score=94.21 Aligned_cols=103 Identities=12% Similarity=0.033 Sum_probs=68.1
Q ss_pred cccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCC---CCC-----------CCeEEEE----
Q 021362 94 LLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQ---VKP-----------PDVATVL---- 155 (313)
Q Consensus 94 ~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g---~~~-----------~~~i~~v---- 155 (313)
+.+++++ |++.+|+.++|+|+||+|||||+++|+++.+. .+.|.+.+.| .+. ....+++
T Consensus 152 i~aID~~-l~i~~Gq~i~I~G~sG~GKStLl~~I~~~~~~--~~~~vi~liGerg~ev~~~~~~~l~~~g~~~svvvvat 228 (442)
T PRK06315 152 VRCIDGM-LTVARGQRIGIFAGAGVGKSSLLGMIARNAEE--ADVNVIALIGERGREVREFIEGDLGEEGMKRSVIVVST 228 (442)
T ss_pred EEEEecc-ccccCCcEEEEECCCCCCcchHHHHhhccccc--CCceEEEEECCCchHHHHHHHHHHHhcCCceEEEEEeC
Confidence 3489988 99999999999999999999999999998841 3445565534 221 1123444
Q ss_pred -ecCCCCCCcccCCcccChHHHHHhcCCCC---CccHHHHHHHHHHhhc
Q 021362 156 -PMDGFHLYLSQLDAMEDPKEAHARRGAPW---TFNPLLLLNCLKNLRN 200 (313)
Q Consensus 156 -~qd~~~~~~~~ltv~e~~~~~~~~~~~~~---~~~~~~~~~~l~~l~~ 200 (313)
+|++..-.++.+ +...++..++.++... ..+..++.++++.++.
T Consensus 229 s~q~p~~rlnp~~-va~~IAE~~r~~g~~Vl~~~Ds~tR~a~alreV~L 276 (442)
T PRK06315 229 SDQSSQLRLNAAY-VGTAIAEYFRDQGKTVVLMMDSVTRFARALREVGL 276 (442)
T ss_pred CCCCHHHHhhHHH-HHHHHHHHHHHcCCCcchhhhHHHHHHHHHHHhCc
Confidence 777654443333 4444554444444321 3456778888888875
|
|
| >PRK09862 putative ATP-dependent protease; Provisional | Back alignment and domain information |
|---|
Probab=98.45 E-value=2.5e-07 Score=91.38 Aligned_cols=64 Identities=19% Similarity=0.200 Sum_probs=57.1
Q ss_pred EccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCCCC
Q 021362 80 ARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPD 150 (313)
Q Consensus 80 ~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~~~ 150 (313)
+.++++.||... +++++++.+..|+.++|+||||+|||||++.|.|+++ |.+|++.++...+..
T Consensus 187 ~~d~~~v~Gq~~----~~~al~laa~~G~~llliG~~GsGKTtLak~L~gllp---p~~g~e~le~~~i~s 250 (506)
T PRK09862 187 QHDLSDVIGQEQ----GKRGLEITAAGGHNLLLIGPPGTGKTMLASRINGLLP---DLSNEEALESAAILS 250 (506)
T ss_pred ccCeEEEECcHH----HHhhhheeccCCcEEEEECCCCCcHHHHHHHHhccCC---CCCCcEEEecchhhh
Confidence 358899998877 9999999999999999999999999999999999999 999998887655433
|
|
| >PRK13695 putative NTPase; Provisional | Back alignment and domain information |
|---|
Probab=98.43 E-value=1e-07 Score=81.36 Aligned_cols=129 Identities=15% Similarity=0.110 Sum_probs=72.3
Q ss_pred EEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCCCCeEEEEecCCCCCCcccCCcccChHHHHHhcCCCCCccH
Q 021362 109 IVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNP 188 (313)
Q Consensus 109 iv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~~~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~~~~~~ 188 (313)
.++|.|+||||||||++.|++.+. + .|. . ..+|+.++... ......++.... ..+ .
T Consensus 2 ~i~ltG~~G~GKTTll~~i~~~l~---~-~G~-~--------~~g~~~~~~~~--~~~~~~~~~~~~---~~~-----~- 57 (174)
T PRK13695 2 KIGITGPPGVGKTTLVLKIAELLK---E-EGY-K--------VGGFYTEEVRE--GGKRIGFKIIDL---DTG-----E- 57 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH---H-CCC-e--------EEEEEcHHHHh--cCCccceEEEEc---CCC-----C-
Confidence 478999999999999999999876 4 331 1 13444443110 000111110000 000 0
Q ss_pred HHHHHHHHHhhc-C---CCccCCCCCCcCCCcchhhhhhccCceEEEEcC--CccccChhhHHHHHhhccc---eEEEEc
Q 021362 189 LLLLNCLKNLRN-Q---GSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDG--NYLFLDGGVWKDVSSMFDE---KWFIEV 259 (313)
Q Consensus 189 ~~~~~~l~~l~~-~---~~~~~~~LSgG~kqRv~ia~al~~~ar~Li~d~--~~lllDE~~~~~l~~l~~~---~i~vtH 259 (313)
...+...+. . ..++...+|++++-+..+.......++++++|+ +.-.+|+...+.+.++.+. .++++|
T Consensus 58 ---~~~l~~~~~~~~~~~~~~~~~lsgle~~~~~l~~~~l~~~~~lllDE~~~~e~~~~~~~~~l~~~~~~~~~~i~v~h 134 (174)
T PRK13695 58 ---EGILARVGFPSRPRVGKYVVNLEDLERIGIPALERALEEADVIIIDEIGKMELKSPKFVKAVEEVLDSEKPVIATLH 134 (174)
T ss_pred ---eEEccccCCCCCCceeeEEEehHHHHHHHHHHHHhccCCCCEEEEECCCcchhhhHHHHHHHHHHHhCCCeEEEEEC
Confidence 001111111 1 122334688888888887766667788888887 4445555666777776643 479999
Q ss_pred ChHHH
Q 021362 260 DLDTA 264 (313)
Q Consensus 260 d~~~~ 264 (313)
+....
T Consensus 135 ~~~~~ 139 (174)
T PRK13695 135 RRSVH 139 (174)
T ss_pred chhhH
Confidence 96543
|
|
| >PRK07594 type III secretion system ATPase SsaN; Validated | Back alignment and domain information |
|---|
Probab=98.41 E-value=1.7e-07 Score=90.65 Aligned_cols=63 Identities=17% Similarity=0.223 Sum_probs=54.6
Q ss_pred cEEEEccceEEcc-ccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCC
Q 021362 76 PVVEARCMDEVYD-ALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQV 146 (313)
Q Consensus 76 ~~l~~~~l~~~y~-~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~ 146 (313)
+.++.+.+++.|. +.. +++++ |++.+|+.++|+|+||+|||||+++|+++.. ++.|.+.+.|.
T Consensus 128 ~~~~r~~v~~~l~tGi~----aID~l-l~i~~GqrigI~G~sG~GKSTLL~~I~~~~~---~d~~vi~~iGe 191 (433)
T PRK07594 128 PAMVRQPITQPLMTGIR----AIDSV-ATCGEGQRVGIFSAPGVGKSTLLAMLCNAPD---ADSNVLVLIGE 191 (433)
T ss_pred CceeccCHhheeCCCce----eeeee-eecCCCCEEEEECCCCCCccHHHHHhcCCCC---CCEEEEEEECC
Confidence 3578888888885 334 99999 9999999999999999999999999999998 99987766554
|
|
| >PF13555 AAA_29: P-loop containing region of AAA domain | Back alignment and domain information |
|---|
Probab=98.40 E-value=3.1e-07 Score=64.78 Aligned_cols=36 Identities=22% Similarity=0.350 Sum_probs=29.4
Q ss_pred ccccccccCC-CcEEEEECCCCCcHHHHHHHHHHHhc
Q 021362 97 TSALASNVNV-KHIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 97 L~~vsl~i~~-Geiv~l~GpNGsGKSTLlk~l~gl~~ 132 (313)
+++..+++.+ |.++.|.||||||||||+.+|.=++-
T Consensus 12 f~~~~~~~~~~g~~tli~G~nGsGKSTllDAi~~~L~ 48 (62)
T PF13555_consen 12 FDGETIDFDPRGDVTLITGPNGSGKSTLLDAIQTVLY 48 (62)
T ss_pred cCCeEEeecCCCcEEEEECCCCCCHHHHHHHHHHHHc
Confidence 3445566764 56999999999999999999988875
|
|
| >PRK08149 ATP synthase SpaL; Validated | Back alignment and domain information |
|---|
Probab=98.36 E-value=4.4e-07 Score=87.75 Aligned_cols=49 Identities=14% Similarity=0.205 Sum_probs=44.3
Q ss_pred ccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCC---ceeecCCCC
Q 021362 95 LPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQK---ASSFDSQVK 147 (313)
Q Consensus 95 ~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~---G~i~~~g~~ 147 (313)
.+++++ +++.+|++++|+|+||+|||||+++|+++.. ++. |.|...|.+
T Consensus 140 ~aid~l-l~i~~Gq~i~I~G~sG~GKTTLl~~i~~~~~---~dv~v~g~Ig~rg~e 191 (428)
T PRK08149 140 RAIDGL-LTCGVGQRMGIFASAGCGKTSLMNMLIEHSE---ADVFVIGLIGERGRE 191 (428)
T ss_pred EEEeee-eeEecCCEEEEECCCCCChhHHHHHHhcCCC---CCeEEEEEEeeCCcc
Confidence 399999 9999999999999999999999999999887 776 778777765
|
|
| >PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=98.35 E-value=9.2e-07 Score=90.74 Aligned_cols=87 Identities=23% Similarity=0.291 Sum_probs=62.2
Q ss_pred cccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCCCCeEEEEecCCCCCCcccCCcccChHH
Q 021362 96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKE 175 (313)
Q Consensus 96 ~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~~~~i~~v~qd~~~~~~~~ltv~e~~~~ 175 (313)
++++.++.+++|++++++||||+||||++..|++.+. ...| .+.++++..|.+. ....|++..
T Consensus 174 il~~~~~~~~~g~Vi~lVGpnGvGKTTTiaKLA~~~~---~~~G---------~kkV~lit~Dt~R-----igA~eQL~~ 236 (767)
T PRK14723 174 VLRDEDALLAQGGVLALVGPTGVGKTTTTAKLAARCV---AREG---------ADQLALLTTDSFR-----IGALEQLRI 236 (767)
T ss_pred hccCCCcccCCCeEEEEECCCCCcHHHHHHHHHhhHH---HHcC---------CCeEEEecCcccc-----hHHHHHHHH
Confidence 6778888888999999999999999999999999885 3333 1357778777542 345677776
Q ss_pred HHHhcCCCCC--ccHHHHHHHHHHhh
Q 021362 176 AHARRGAPWT--FNPLLLLNCLKNLR 199 (313)
Q Consensus 176 ~~~~~~~~~~--~~~~~~~~~l~~l~ 199 (313)
.....+.+.. .+...+.+.++.+.
T Consensus 237 ~a~~~gvpv~~~~~~~~l~~al~~~~ 262 (767)
T PRK14723 237 YGRILGVPVHAVKDAADLRFALAALG 262 (767)
T ss_pred HHHhCCCCccccCCHHHHHHHHHHhc
Confidence 6666665432 34455666666655
|
|
| >KOG2878 consensus Predicted kinase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.34 E-value=8e-06 Score=70.51 Aligned_cols=176 Identities=21% Similarity=0.262 Sum_probs=105.0
Q ss_pred cEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCCCCeEEEEecCCCCCCcccCCcccChHHH--------HHh
Q 021362 108 HIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEA--------HAR 179 (313)
Q Consensus 108 eiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~~~~i~~v~qd~~~~~~~~ltv~e~~~~~--------~~~ 179 (313)
-++|+-||-|||||||.-.|---+.. -.-| ...+++++-|+|+ +|-.+.+++. +..
T Consensus 32 l~igfSgPQGsGKstl~~ald~~lt~--Ky~~---------E~s~~~~SvDDFY-----LThe~Q~eL~k~npnN~Llq~ 95 (282)
T KOG2878|consen 32 LVIGFSGPQGSGKSTLVFALDYKLTK--KYIQ---------EYSSATISVDDFY-----LTHEGQAELRKKNPNNALLQY 95 (282)
T ss_pred EEEEecCCCCCCceeehhhhHHHHHH--Hhcc---------ccceEEEEeccee-----eechhHHHHHhhCCCChhhcc
Confidence 48999999999999999877654431 1001 1146778888774 4555555443 234
Q ss_pred cCCCCCccHHHHHHHHHHhh----cCCCccCCCCC----CcCCCcchhhhhhc-cCceEEEEcCCccccCh---------
Q 021362 180 RGAPWTFNPLLLLNCLKNLR----NQGSVYAPSFD----HGVGDPVEDDILVG-LQHKVVIVDGNYLFLDG--------- 241 (313)
Q Consensus 180 ~~~~~~~~~~~~~~~l~~l~----~~~~~~~~~LS----gG~kqRv~ia~al~-~~ar~Li~d~~~lllDE--------- 241 (313)
+|.+.+.+.....++|..+- +.....+|.|. +|...|.--....- .+..++|+++..+.+.+
T Consensus 96 RGlaGtHD~kll~evLna~~k~~~d~~~v~vP~YdKS~f~G~GDR~d~sqw~k~~P~~~~ifEGWmlGF~Pl~~~~v~a~ 175 (282)
T KOG2878|consen 96 RGLAGTHDLKLLVEVLNALSKLTKDGLKVKVPRYDKSAFSGRGDRADSSQWPKVEPLSVIIFEGWMLGFKPLPADVVKAV 175 (282)
T ss_pred CCCCCcccHHHHHHHHHHHHcCCcccceEeccccchhhccCCCCCCccccCcccCceeEEEEecccccccccchhheecc
Confidence 56777888888888888765 22223444332 33344433222211 13778999999888877
Q ss_pred --------hhHHHH-------Hhhccc-eEEEEcChHHHHHHHh------hcccccCCchHHHHHHHHhcCCchhHHhhh
Q 021362 242 --------GVWKDV-------SSMFDE-KWFIEVDLDTAMQRVL------KRHISTGKPPDVAKWRIEYNDRPNAELIMK 299 (313)
Q Consensus 242 --------~~~~~l-------~~l~~~-~i~vtHd~~~~~~rv~------griv~~G~~~ev~~~~~~~~~~~~~~~i~~ 299 (313)
.+-+.| .+..+. +++-+.|++-+-++.+ ...+..|-.+|-+.+ +..+++|...++++
T Consensus 176 d~l~Gdl~~VN~kL~~Y~d~~~k~Idslvv~~~q~inyVYrWRLQqEhal~~~~~kGMsDEeV~~-FV~rYmP~Yk~YL~ 254 (282)
T KOG2878|consen 176 DPLQGDLEVVNKKLEAYYDAWDKYIDSLVVIKIQDINYVYRWRLQQEHALRQDGQKGMSDEEVND-FVSRYMPAYKAYLP 254 (282)
T ss_pred CcccccHHHHhhHHHHHHHHHHHhhhhEEEEEecCccHhhhhhHHHHHHHHHhhccCCCHHHHHH-HHHhhhhHHHhhhh
Confidence 000111 111122 3577889998888333 344456766666655 56688999987666
Q ss_pred c
Q 021362 300 S 300 (313)
Q Consensus 300 ~ 300 (313)
+
T Consensus 255 t 255 (282)
T KOG2878|consen 255 T 255 (282)
T ss_pred h
Confidence 4
|
|
| >cd01136 ATPase_flagellum-secretory_path_III Flagellum-specific ATPase/type III secretory pathway virulence-related protein | Back alignment and domain information |
|---|
Probab=98.32 E-value=3.7e-07 Score=85.49 Aligned_cols=58 Identities=24% Similarity=0.224 Sum_probs=47.4
Q ss_pred ccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCC
Q 021362 81 RCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQ 145 (313)
Q Consensus 81 ~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g 145 (313)
..++..|... +.+++++ |.+.+|++++|+|+||+|||||+++|+|+.. |+.|.+..-|
T Consensus 47 ~~~~~~l~tG---i~aiD~l-~~i~~Gqri~I~G~sG~GKTtLl~~Ia~~~~---~~~~vi~~iG 104 (326)
T cd01136 47 RPIDEVLPTG---VRAIDGL-LTVGKGQRLGIFAGSGVGKSTLLGMIARGTT---ADVNVIALIG 104 (326)
T ss_pred ccceeEcCCC---cEEEeee-eEEcCCcEEEEECCCCCChHHHHHHHhCCCC---CCEEEEEEEe
Confidence 3444555432 2389999 9999999999999999999999999999998 9888776544
|
This group of ATPases are responsible for the export of flagellum and virulence-related proteins. The bacterial flagellar motor is similar to the F0F1-ATPase, in that they both are proton driven rotary molecular devices. However, the main function of the bacterial flagellar motor is to rotate the flagellar filament for cell motility. Intracellular pathogens such as Salmonella and Chlamydia also have proteins which are similar to the flagellar-specific ATPase, but function in the secretion of virulence-related proteins via the type III secretory pathway. |
| >PRK09825 idnK D-gluconate kinase; Provisional | Back alignment and domain information |
|---|
Probab=98.31 E-value=6.7e-07 Score=76.74 Aligned_cols=27 Identities=22% Similarity=0.332 Sum_probs=25.9
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHHHhc
Q 021362 106 VKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 106 ~Geiv~l~GpNGsGKSTLlk~l~gl~~ 132 (313)
+|++++|+|+||||||||+++|++++.
T Consensus 2 ~ge~i~l~G~sGsGKSTl~~~la~~l~ 28 (176)
T PRK09825 2 AGESYILMGVSGSGKSLIGSKIAALFS 28 (176)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhcC
Confidence 689999999999999999999999986
|
|
| >KOG4203 consensus Armadillo/beta-Catenin/plakoglobin [Signal transduction mechanisms; Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.29 E-value=2.3e-06 Score=83.98 Aligned_cols=192 Identities=25% Similarity=0.379 Sum_probs=131.1
Q ss_pred cCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCCCCeEEEEecCCCCCCcccCCcccChHHHHH---hc
Q 021362 104 VNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHA---RR 180 (313)
Q Consensus 104 i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~~~~i~~v~qd~~~~~~~~ltv~e~~~~~~~---~~ 180 (313)
...--++|+.|.+++||||.+..+...+.+. +.+| ....+..++++.++ . ....+++..... ..
T Consensus 41 ~~~~~~igv~~~s~~Gk~~~~~~i~~~l~~~-~~~~--------~~~~v~~ls~~~fY--~--~lt~~~~~~a~~~~~~f 107 (473)
T KOG4203|consen 41 GKEPFVIGVAGGTASGKSTVCEKIVEQLGAI-ERDG--------RQPQVVLLSQDSFY--K--VLTSEELAKAQEGKYNF 107 (473)
T ss_pred CcceEEEEeecCcccCceeehHHHHHHhhhh-hhcc--------CCCeEEEeecHHHH--H--hhchHHHHHhhhccccc
Confidence 3456689999999999999776666655321 2223 22345667776442 2 233444444332 23
Q ss_pred CCCCCccHHHHHHHHHHhhcCCCccCCCCCCcCCCcchhhhhhccCceEEEEcCCccccChhhHHHHHhhccceEEEEcC
Q 021362 181 GAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEKWFIEVD 260 (313)
Q Consensus 181 ~~~~~~~~~~~~~~l~~l~~~~~~~~~~LSgG~kqRv~ia~al~~~ar~Li~d~~~lllDE~~~~~l~~l~~~~i~vtHd 260 (313)
..+.+++.+.+...++.+..+....++-|+.=--+|..--..++..+.++++++-+.+.| +.++++.+..+|++-|
T Consensus 108 ~~pda~~~~l~~~~~~~~~kg~~v~ip~y~~~~~~~~~~~~~~l~~~~~~ilegil~~yd----~~~~~l~~~k~fvd~~ 183 (473)
T KOG4203|consen 108 DHPDAFDFELLYLTLKNLKKGKAVEIPVYDFVTHSRDEEKTIVVYPADVIILEGILAFYD----ERVRDLFTMKLFVDTD 183 (473)
T ss_pred cCCCCcchhhHHHHHhcccccceeeceeeeeecccCCCCceEEecCCCceeehhHHHHhH----HHHHHHhcceEEEecC
Confidence 456677777777777777766666666554333333221122344578888999888888 5777788888999999
Q ss_pred hHHHHHHHh-hcccccCCchHHHHHHHHhcCCchhH-HhhhcccCccEEeecCC
Q 021362 261 LDTAMQRVL-KRHISTGKPPDVAKWRIEYNDRPNAE-LIMKSKKNADLVIKSID 312 (313)
Q Consensus 261 ~~~~~~rv~-griv~~G~~~ev~~~~~~~~~~~~~~-~i~~~~~~ad~ii~~~~ 312 (313)
.+....|++ |-+.+.|..-+-+..+|...+.|+++ ||.|+++.||++|+...
T Consensus 184 ~d~rla~ri~r~~~~~g~~l~~i~~q~~~f~kp~~~~~i~p~~~~ad~ii~~~~ 237 (473)
T KOG4203|consen 184 ADVRLARRILRDIVERGRDLESILTQYSTFVKPAFEEFILPTKKYADVIIPRGG 237 (473)
T ss_pred cchhhHHHHhcchhhhcccHHHHHHHHHhhcCchHHHHhhHHHHhhhheeeccc
Confidence 999988444 77778888777777778889999988 99999999999998653
|
|
| >PRK01889 GTPase RsgA; Reviewed | Back alignment and domain information |
|---|
Probab=98.27 E-value=9.5e-07 Score=84.10 Aligned_cols=63 Identities=24% Similarity=0.304 Sum_probs=49.9
Q ss_pred ccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCC-----CCCeEEEEecCCCCC
Q 021362 97 TSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK-----PPDVATVLPMDGFHL 162 (313)
Q Consensus 97 L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~-----~~~~i~~v~qd~~~~ 162 (313)
++.+.-.+.+|++++|+|+||+|||||++.|+|... ++.|+|.+++.. ....+.+++++.+.+
T Consensus 185 l~~L~~~L~~g~~~~lvG~sgvGKStLin~L~g~~~---~~~G~i~~~~~~g~~tt~~~~l~~l~~~~~l~ 252 (356)
T PRK01889 185 LDVLAAWLSGGKTVALLGSSGVGKSTLVNALLGEEV---QKTGAVREDDSKGRHTTTHRELHPLPSGGLLI 252 (356)
T ss_pred HHHHHHHhhcCCEEEEECCCCccHHHHHHHHHHhcc---cceeeEEECCCCCcchhhhccEEEecCCCeec
Confidence 444555678899999999999999999999999998 999999887532 223477788775443
|
|
| >PRK00300 gmk guanylate kinase; Provisional | Back alignment and domain information |
|---|
Probab=98.24 E-value=1e-06 Score=76.91 Aligned_cols=28 Identities=39% Similarity=0.582 Sum_probs=26.2
Q ss_pred CCCcEEEEECCCCCcHHHHHHHHHHHhc
Q 021362 105 NVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 105 ~~Geiv~l~GpNGsGKSTLlk~l~gl~~ 132 (313)
++|++++|+||+|||||||+++|++.++
T Consensus 3 ~~g~~i~i~G~sGsGKstl~~~l~~~~~ 30 (205)
T PRK00300 3 RRGLLIVLSGPSGAGKSTLVKALLERDP 30 (205)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCc
Confidence 5899999999999999999999999873
|
|
| >PRK09099 type III secretion system ATPase; Provisional | Back alignment and domain information |
|---|
Probab=98.24 E-value=8.3e-07 Score=86.22 Aligned_cols=48 Identities=21% Similarity=0.165 Sum_probs=44.3
Q ss_pred ccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCC
Q 021362 95 LPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQV 146 (313)
Q Consensus 95 ~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~ 146 (313)
.+++++ |++.+|++++|+|+||+|||||+++|+++.. ++.|.+.+.|+
T Consensus 152 ~~ID~l-~~i~~Gq~~~I~G~sG~GKTtLl~~ia~~~~---~d~~vi~~iGe 199 (441)
T PRK09099 152 RIVDGL-MTLGEGQRMGIFAPAGVGKSTLMGMFARGTQ---CDVNVIALIGE 199 (441)
T ss_pred eeccce-eeecCCCEEEEECCCCCCHHHHHHHHhCCCC---CCeEEEEEEcc
Confidence 389999 9999999999999999999999999999998 99888877664
|
|
| >TIGR00767 rho transcription termination factor Rho | Back alignment and domain information |
|---|
Probab=98.22 E-value=1.3e-06 Score=83.37 Aligned_cols=53 Identities=21% Similarity=0.262 Sum_probs=47.3
Q ss_pred EEEEccceEEcccccccccccc-----------ccccccCCCcEEEEECCCCCcHHHHHHHHHHHhc
Q 021362 77 VVEARCMDEVYDALAQRLLPTS-----------ALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 77 ~l~~~~l~~~y~~~~~~~~~L~-----------~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~ 132 (313)
-++++||++.|.+.. .+|+ |+++.|.+|+.++|+||+|+|||||++.|+..+.
T Consensus 130 ri~Fe~LTf~YP~er---~~Le~~~~~~~~R~id~~~pig~Gq~~~IvG~~g~GKTtL~~~i~~~I~ 193 (415)
T TIGR00767 130 RVLFENLTPLYPNER---LRLETSTEDLSTRVLDLFAPIGKGQRGLIVAPPKAGKTVLLQKIAQAIT 193 (415)
T ss_pred CeEEEEeeecCCCcc---ceeecCccccceeeeeeEEEeCCCCEEEEECCCCCChhHHHHHHHHhhc
Confidence 599999999997532 2786 9999999999999999999999999999999875
|
Members of this family differ in the specificity of RNA binding. |
| >TIGR02546 III_secr_ATP type III secretion apparatus H+-transporting two-sector ATPase | Back alignment and domain information |
|---|
Probab=98.21 E-value=9.2e-07 Score=85.83 Aligned_cols=46 Identities=20% Similarity=0.187 Sum_probs=42.9
Q ss_pred cccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCC
Q 021362 96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQ 145 (313)
Q Consensus 96 ~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g 145 (313)
+++++ |++.+|++++|+|+||+|||||+++|+++.. |+.|.+..-|
T Consensus 135 ~id~l-~~i~~Gq~~~I~G~sG~GKStLl~~I~~~~~---~~~~vi~~iG 180 (422)
T TIGR02546 135 AIDGL-LTCGEGQRIGIFAGAGVGKSTLLGMIARGAS---ADVNVIALIG 180 (422)
T ss_pred eehhh-ccccCCCEEEEECCCCCChHHHHHHHhCCCC---CCEEEEEEEc
Confidence 89999 9999999999999999999999999999998 9988876644
|
|
| >PRK10078 ribose 1,5-bisphosphokinase; Provisional | Back alignment and domain information |
|---|
Probab=98.20 E-value=1.3e-06 Score=75.51 Aligned_cols=26 Identities=35% Similarity=0.616 Sum_probs=24.5
Q ss_pred CcEEEEECCCCCcHHHHHHHHHHHhc
Q 021362 107 KHIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 107 Geiv~l~GpNGsGKSTLlk~l~gl~~ 132 (313)
|++++|+||||||||||+++|++...
T Consensus 2 g~~i~l~G~sGsGKsTl~~~l~~~~~ 27 (186)
T PRK10078 2 GKLIWLMGPSGSGKDSLLAALRQREQ 27 (186)
T ss_pred CcEEEEECCCCCCHHHHHHHHhccCC
Confidence 78999999999999999999999875
|
|
| >TIGR01026 fliI_yscN ATPase FliI/YscN family | Back alignment and domain information |
|---|
Probab=98.18 E-value=1.1e-06 Score=85.57 Aligned_cols=48 Identities=21% Similarity=0.187 Sum_probs=42.7
Q ss_pred ccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCC
Q 021362 95 LPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQV 146 (313)
Q Consensus 95 ~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~ 146 (313)
.+++++ |.+.+|+.++|+|+||+|||||+++|+++.+ ++.|.+..-|.
T Consensus 152 ~~iD~l-~~i~~Gq~~~I~G~sG~GKStLl~~I~~~~~---~~~~vi~~iG~ 199 (440)
T TIGR01026 152 RSIDGL-LTVGKGQRIGIFAGSGVGKSTLLGMIARNTE---ADVNVIALIGE 199 (440)
T ss_pred eeeeec-cccCCCcEEEEECCCCCCHHHHHHHHhCCCC---CCEEEEEEEee
Confidence 389999 9999999999999999999999999999998 88877655443
|
This family of ATPases demonstrates extensive homology with ATP synthase F1, beta subunit. It is a mixture of members with two different protein functions. The first group is exemplified by Salmonella typhimurium FliI protein. It is needed for flagellar assembly, its ATPase activity is required for flagellation, and it may be involved in a specialized protein export pathway that proceeds without signal peptide cleavage. The second group of proteins function in the export of virulence proteins; exemplified by Yersinia sp. YscN protein an ATPase involved in the type III secretory pathway for the antihost Yops proteins. |
| >PRK06793 fliI flagellum-specific ATP synthase; Validated | Back alignment and domain information |
|---|
Probab=98.18 E-value=1.7e-06 Score=83.80 Aligned_cols=63 Identities=14% Similarity=0.238 Sum_probs=51.7
Q ss_pred EEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCC
Q 021362 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQV 146 (313)
Q Consensus 77 ~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~ 146 (313)
.++.+.+++.|... +.+++++ |.+.+|+.++|+|+||+|||||+++|++..+ ++.|.|.+.|+
T Consensus 130 ~~~r~~i~~~l~TG---iraID~l-l~I~~Gqri~I~G~sG~GKTtLl~~Ia~~~~---~~~gvI~~iGe 192 (432)
T PRK06793 130 AFEREEITDVFETG---IKSIDSM-LTIGIGQKIGIFAGSGVGKSTLLGMIAKNAK---ADINVISLVGE 192 (432)
T ss_pred chheechhhccCCC---CEEEecc-ceecCCcEEEEECCCCCChHHHHHHHhccCC---CCeEEEEeCCC
Confidence 46777888888643 2378874 9999999999999999999999999999998 88877655443
|
|
| >TIGR03498 FliI_clade3 flagellar protein export ATPase FliI | Back alignment and domain information |
|---|
Probab=98.18 E-value=1.1e-06 Score=84.94 Aligned_cols=62 Identities=16% Similarity=0.079 Sum_probs=49.8
Q ss_pred EEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCC
Q 021362 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQV 146 (313)
Q Consensus 78 l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~ 146 (313)
++-..++.-+.... .+++ .+|++.+|+.++|+|+||+|||||+++|+++.+ |+.|.|.+.|+
T Consensus 115 ~~R~~i~~~l~tGi---~aiD-~~~~i~~Gq~i~I~G~sG~GKTtLl~~I~~~~~---~~~gvi~~iGe 176 (418)
T TIGR03498 115 MSRARVGEPLDTGV---RVID-TFLPLCRGQRLGIFAGSGVGKSTLLSMLARNTD---ADVVVIALVGE 176 (418)
T ss_pred hhccCcccccCCcc---EEEe-eeccccCCcEEEEECCCCCChHHHHHHHhCCCC---CCEEEEEEEee
Confidence 44455555554432 2665 699999999999999999999999999999998 99998877664
|
Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively. |
| >PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=98.16 E-value=3.2e-06 Score=80.62 Aligned_cols=73 Identities=21% Similarity=0.288 Sum_probs=53.7
Q ss_pred cccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCCCCeEEEEecCCCCCCcccCCcccCh
Q 021362 94 LLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDP 173 (313)
Q Consensus 94 ~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~~~~i~~v~qd~~~~~~~~ltv~e~~ 173 (313)
+.++++.++.+++|.+++|+||||+||||++..|++.+. ...| ...++++..|.+. ....|.+
T Consensus 124 l~~~~~~~~~~~~g~ii~lvGptGvGKTTtiakLA~~~~---~~~G---------~~~V~lit~D~~R-----~ga~EqL 186 (374)
T PRK14722 124 LPVLDSEDALMERGGVFALMGPTGVGKTTTTAKLAARCV---MRFG---------ASKVALLTTDSYR-----IGGHEQL 186 (374)
T ss_pred chhhcCCCccccCCcEEEEECCCCCCHHHHHHHHHHHHH---HhcC---------CCeEEEEeccccc-----ccHHHHH
Confidence 346777888899999999999999999999999998763 1111 1357888877552 3556777
Q ss_pred HHHHHhcCCC
Q 021362 174 KEAHARRGAP 183 (313)
Q Consensus 174 ~~~~~~~~~~ 183 (313)
.......+.+
T Consensus 187 ~~~a~~~gv~ 196 (374)
T PRK14722 187 RIFGKILGVP 196 (374)
T ss_pred HHHHHHcCCc
Confidence 7666666655
|
|
| >TIGR03496 FliI_clade1 flagellar protein export ATPase FliI | Back alignment and domain information |
|---|
Probab=98.14 E-value=1.6e-06 Score=83.73 Aligned_cols=63 Identities=21% Similarity=0.150 Sum_probs=51.2
Q ss_pred EEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCC
Q 021362 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQV 146 (313)
Q Consensus 77 ~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~ 146 (313)
.++-..++..|... +.+++.+ |.+.+|++++|+|+||+|||||+++|+++.+ |+.+.+..-|+
T Consensus 111 ~~~R~~~~~~~~tG---i~~id~l-~~i~~Gq~~~I~G~sG~GKTtLl~~I~~~~~---~~~~vi~~iGe 173 (411)
T TIGR03496 111 PLKRAPIDEPLDVG---VRAINGL-LTVGRGQRMGIFAGSGVGKSTLLGMMARYTE---ADVVVVGLIGE 173 (411)
T ss_pred HHhccCcceEeeee---EEeecce-EEEecCcEEEEECCCCCCHHHHHHHHhcCCC---CCEEEEEEEec
Confidence 45666777777532 2388888 9999999999999999999999999999998 88776655443
|
Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively. |
| >TIGR03497 FliI_clade2 flagellar protein export ATPase FliI | Back alignment and domain information |
|---|
Probab=98.14 E-value=1.7e-06 Score=83.61 Aligned_cols=48 Identities=21% Similarity=0.216 Sum_probs=43.9
Q ss_pred cccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCC
Q 021362 96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK 147 (313)
Q Consensus 96 ~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~ 147 (313)
+++++ |.+.+|++++|+|+||+|||||+++|++..+ ++.|.+...|+.
T Consensus 127 ~iD~l-~~i~~Gqri~I~G~sG~GKTtLl~~i~~~~~---~~~gvi~~~Ger 174 (413)
T TIGR03497 127 AIDGL-LTIGKGQRVGIFAGSGVGKSTLLGMIARNAK---ADINVIALIGER 174 (413)
T ss_pred eeeeE-EEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCeEEEEEEccc
Confidence 89999 9999999999999999999999999999998 999887766643
|
Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively. |
| >TIGR00152 dephospho-CoA kinase | Back alignment and domain information |
|---|
Probab=98.13 E-value=1.8e-05 Score=68.32 Aligned_cols=57 Identities=19% Similarity=0.272 Sum_probs=35.3
Q ss_pred HHhhccceEEEEcChHHHHHHHhhcccccCCchHHHHHHHHhcCCchhHHhhhcccCccEEeecC
Q 021362 247 VSSMFDEKWFIEVDLDTAMQRVLKRHISTGKPPDVAKWRIEYNDRPNAELIMKSKKNADLVIKSI 311 (313)
Q Consensus 247 l~~l~~~~i~vtHd~~~~~~rv~griv~~G~~~ev~~~~~~~~~~~~~~~i~~~~~~ad~ii~~~ 311 (313)
+..+++..++++.+.+....|+..|. |.+.+.+..++... .+ ..+.+..||.+|.|.
T Consensus 120 ~~~~~D~vv~V~~~~~~~~~Rl~~R~---~~s~~~~~~r~~~q-~~----~~~~~~~ad~vI~N~ 176 (188)
T TIGR00152 120 LRSLCDRVIVVDVSPQLQLERLMQRD---NLTEEEVQKRLASQ-MD----IEERLARADDVIDNS 176 (188)
T ss_pred cHHhCCEEEEEECCHHHHHHHHHHcC---CCCHHHHHHHHHhc-CC----HHHHHHhCCEEEECC
Confidence 44455666777777777776766443 55555555555543 22 234577899999875
|
This model produces scores in the range of 0-25 bits against adenylate, guanylate, uridine, and thymidylate kinases. |
| >cd01131 PilT Pilus retraction ATPase PilT | Back alignment and domain information |
|---|
Probab=98.11 E-value=2e-05 Score=68.88 Aligned_cols=24 Identities=46% Similarity=0.708 Sum_probs=22.2
Q ss_pred EEEEECCCCCcHHHHHHHHHHHhc
Q 021362 109 IVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 109 iv~l~GpNGsGKSTLlk~l~gl~~ 132 (313)
++.|.||+||||||+++.|.+.+.
T Consensus 3 lilI~GptGSGKTTll~~ll~~~~ 26 (198)
T cd01131 3 LVLVTGPTGSGKSTTLAAMIDYIN 26 (198)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhh
Confidence 688999999999999999998885
|
PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility. |
| >PLN03210 Resistant to P | Back alignment and domain information |
|---|
Probab=98.11 E-value=8.9e-06 Score=88.58 Aligned_cols=44 Identities=27% Similarity=0.465 Sum_probs=35.4
Q ss_pred cccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCC
Q 021362 100 LASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQ 145 (313)
Q Consensus 100 vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g 145 (313)
++++...+.++||+|++|+|||||++.+++.+.. ...|.+++++
T Consensus 200 L~l~~~~~~vvgI~G~gGiGKTTLA~~l~~~l~~--~F~g~vfv~~ 243 (1153)
T PLN03210 200 LHLESEEVRMVGIWGSSGIGKTTIARALFSRLSR--QFQSSVFIDR 243 (1153)
T ss_pred HccccCceEEEEEEcCCCCchHHHHHHHHHHHhh--cCCeEEEeec
Confidence 4567788999999999999999999999776652 4467776653
|
syringae 6; Provisional |
| >PRK05922 type III secretion system ATPase; Validated | Back alignment and domain information |
|---|
Probab=98.10 E-value=2.5e-06 Score=82.62 Aligned_cols=47 Identities=17% Similarity=0.220 Sum_probs=41.4
Q ss_pred ccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCC
Q 021362 95 LPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQ 145 (313)
Q Consensus 95 ~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g 145 (313)
.+++.+ +.+.+|+.++|+|+||+|||||+++|++..+ ++.|.+..-|
T Consensus 146 r~ID~l-l~I~~GqrigI~G~nG~GKSTLL~~Ia~~~~---~d~gvi~liG 192 (434)
T PRK05922 146 KAIDAF-LTLGKGQRIGVFSEPGSGKSSLLSTIAKGSK---STINVIALIG 192 (434)
T ss_pred eeecce-EEEcCCcEEEEECCCCCChHHHHHHHhccCC---CCceEEEEeC
Confidence 377776 9999999999999999999999999999988 8888875433
|
|
| >PRK10416 signal recognition particle-docking protein FtsY; Provisional | Back alignment and domain information |
|---|
Probab=98.10 E-value=3.5e-06 Score=78.93 Aligned_cols=40 Identities=15% Similarity=0.236 Sum_probs=35.0
Q ss_pred CCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCC
Q 021362 105 NVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK 147 (313)
Q Consensus 105 ~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~ 147 (313)
.+|++++|+||||+||||++..|++.+. +..|+|.+.+.+
T Consensus 112 ~~~~vi~lvGpnGsGKTTt~~kLA~~l~---~~g~~V~Li~~D 151 (318)
T PRK10416 112 KKPFVILVVGVNGVGKTTTIGKLAHKYK---AQGKKVLLAAGD 151 (318)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHH---hcCCeEEEEecC
Confidence 5799999999999999999999999998 777787765544
|
|
| >PRK07960 fliI flagellum-specific ATP synthase; Validated | Back alignment and domain information |
|---|
Probab=98.09 E-value=1.8e-06 Score=83.74 Aligned_cols=48 Identities=23% Similarity=0.213 Sum_probs=42.1
Q ss_pred cccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCC---ceeecCCCC
Q 021362 96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQK---ASSFDSQVK 147 (313)
Q Consensus 96 ~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~---G~i~~~g~~ 147 (313)
+++.+ |++.+|++++|+|+||+|||||+++|+++.+ |+. |.|.+.|.+
T Consensus 165 aID~l-l~I~~Gqri~I~G~sG~GKTTLL~~Ia~~~~---~d~iv~g~Igerg~e 215 (455)
T PRK07960 165 AINAL-LTVGRGQRMGLFAGSGVGKSVLLGMMARYTQ---ADVIVVGLIGERGRE 215 (455)
T ss_pred eeeec-ccccCCcEEEEECCCCCCccHHHHHHhCCCC---CCEEEEEEEEECCeE
Confidence 66655 9999999999999999999999999999998 875 777777754
|
|
| >cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs | Back alignment and domain information |
|---|
Probab=98.06 E-value=2e-05 Score=67.46 Aligned_cols=123 Identities=14% Similarity=0.095 Sum_probs=68.4
Q ss_pred EEEEECCCCCcHHHHHHHHHHH-hcccCCCCceeecCCCCCCCeEEEEecCCCCCCcccCCcccChHHHHHhcCCCCCcc
Q 021362 109 IVGLAGPPGAGKSTLAAEVVRR-INKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFN 187 (313)
Q Consensus 109 iv~l~GpNGsGKSTLlk~l~gl-~~~~~p~~G~i~~~g~~~~~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~~~~~ 187 (313)
++.|.||+|+|||||.-.++-. .+ ....+.|+..+. +..+.+... ...|.+
T Consensus 1 ~~li~G~~G~GKT~l~~~~~~~~~~---------------~g~~v~~~s~e~--------~~~~~~~~~-~~~g~~---- 52 (187)
T cd01124 1 STLLSGGPGTGKTTFALQFLYAGLA---------------RGEPGLYVTLEE--------SPEELIENA-ESLGWD---- 52 (187)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHH---------------CCCcEEEEECCC--------CHHHHHHHH-HHcCCC----
Confidence 3678999999999998765433 22 123355555431 222222221 122322
Q ss_pred HHHHHHHHHHhh--cCCCccCCCCCCcCCC------cchhhhhhccCceEEEEcCCccccC---h----hhHHHHHhhcc
Q 021362 188 PLLLLNCLKNLR--NQGSVYAPSFDHGVGD------PVEDDILVGLQHKVVIVDGNYLFLD---G----GVWKDVSSMFD 252 (313)
Q Consensus 188 ~~~~~~~l~~l~--~~~~~~~~~LSgG~kq------Rv~ia~al~~~ar~Li~d~~~lllD---E----~~~~~l~~l~~ 252 (313)
.+. +...+ ...+..+..+|+|++| ......+...++++++.|++..++| + .+.+.+..+.+
T Consensus 53 ~~~----l~~~g~l~~~d~~~~~~s~~~~~~~~~~~~~i~~~~~~~~~~~lviD~~~~~~~~~~~~~~~~i~~l~~~l~~ 128 (187)
T cd01124 53 LER----LEDEGLLAIVDADPDEIGPAESSLRLELIQRLKDAIEEFKAKRVVIDSVSGLLLMEQSTARLEIRRLLFALKR 128 (187)
T ss_pred hHH----HHhcCCeEEEecCccccchhhhhhhHHHHHHHHHHHHHhCCCEEEEeCcHHHhhcChHHHHHHHHHHHHHHHH
Confidence 111 11222 1123445588999988 4444444566899999999999988 4 23334434333
Q ss_pred c---eEEEEcChHH
Q 021362 253 E---KWFIEVDLDT 263 (313)
Q Consensus 253 ~---~i~vtHd~~~ 263 (313)
. .++++|+...
T Consensus 129 ~g~tvi~v~~~~~~ 142 (187)
T cd01124 129 FGVTTLLTSEQSGL 142 (187)
T ss_pred CCCEEEEEeccccC
Confidence 2 3688887664
|
A related protein is found in archaea. |
| >PRK08472 fliI flagellum-specific ATP synthase; Validated | Back alignment and domain information |
|---|
Probab=98.05 E-value=3.3e-06 Score=81.88 Aligned_cols=62 Identities=19% Similarity=0.194 Sum_probs=48.9
Q ss_pred EEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCC
Q 021362 79 EARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK 147 (313)
Q Consensus 79 ~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~ 147 (313)
+-.-++..|... +.+++++ +++.+|++++|+|+||+|||||+++|++... ++.+.|...|..
T Consensus 133 ~R~~i~~~l~tg---i~aid~l-~~i~~Gq~~~i~G~sG~GKStLl~~i~~~~~---~~v~vi~~iGer 194 (434)
T PRK08472 133 KRGLIDEVFSVG---VKSIDGL-LTCGKGQKLGIFAGSGVGKSTLMGMIVKGCL---APIKVVALIGER 194 (434)
T ss_pred HcCCcceeccch---hHHhhhc-ceecCCCEEEEECCCCCCHHHHHHHHhhccC---CCEEEEEeeCcc
Confidence 334455555421 2289999 9999999999999999999999999999887 788877766543
|
|
| >PRK03846 adenylylsulfate kinase; Provisional | Back alignment and domain information |
|---|
Probab=98.05 E-value=3e-06 Score=73.89 Aligned_cols=38 Identities=18% Similarity=0.261 Sum_probs=30.9
Q ss_pred CCCcEEEEECCCCCcHHHHHHHHHHHhcccCCC-CceeecCC
Q 021362 105 NVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQ-KASSFDSQ 145 (313)
Q Consensus 105 ~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~-~G~i~~~g 145 (313)
++|.+++|+|+||||||||++.|.+.+. +. .|.+.++|
T Consensus 22 ~~~~~i~i~G~~GsGKSTla~~l~~~l~---~~~~~~~~ld~ 60 (198)
T PRK03846 22 HKGVVLWFTGLSGSGKSTVAGALEEALH---ELGVSTYLLDG 60 (198)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHH---hCCCCEEEEcC
Confidence 6899999999999999999999999885 33 23455554
|
|
| >COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=98.05 E-value=3.8e-06 Score=85.45 Aligned_cols=84 Identities=14% Similarity=0.170 Sum_probs=65.2
Q ss_pred CCCccCCCCCCcCCCcchhhhhhccCc--eEEEEcCCccccCh----hhHHHHHhhc---cceEEEEcChHHHHH--HHh
Q 021362 201 QGSVYAPSFDHGVGDPVEDDILVGLQH--KVVIVDGNYLFLDG----GVWKDVSSMF---DEKWFIEVDLDTAMQ--RVL 269 (313)
Q Consensus 201 ~~~~~~~~LSgG~kqRv~ia~al~~~a--r~Li~d~~~lllDE----~~~~~l~~l~---~~~i~vtHd~~~~~~--rv~ 269 (313)
..++...+|||||.||+-+|..+-..- =+.++|+|-+.|-+ .+++.|+.+. ...|+|.||.+.++. +++
T Consensus 474 tL~R~a~TLSGGEaQRIRLAtqiGS~LtGVlYVLDEPSIGLHqrDn~rLi~tL~~LRDlGNTviVVEHDedti~~AD~iI 553 (935)
T COG0178 474 TLSRSAGTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNERLIETLKRLRDLGNTVIVVEHDEDTIRAADHII 553 (935)
T ss_pred cccccCCCcChhHHHHHHHHHHhcccceeeEEEecCCccCCChhhHHHHHHHHHHHHhcCCeEEEEecCHHHHhhcCEEE
Confidence 467788899999999999987764322 23568888888887 4555555444 456899999999988 666
Q ss_pred ----------hcccccCCchHHHHH
Q 021362 270 ----------KRHISTGKPPDVAKW 284 (313)
Q Consensus 270 ----------griv~~G~~~ev~~~ 284 (313)
|.+++.|+|+++...
T Consensus 554 DiGPgAG~~GGeIv~~Gtp~~i~~~ 578 (935)
T COG0178 554 DIGPGAGEHGGEIVAEGTPEELLAN 578 (935)
T ss_pred eeCCCCCcCCCEEEEccCHHHHHhC
Confidence 799999999999764
|
|
| >PRK05688 fliI flagellum-specific ATP synthase; Validated | Back alignment and domain information |
|---|
Probab=98.05 E-value=2.8e-06 Score=82.65 Aligned_cols=39 Identities=26% Similarity=0.297 Sum_probs=36.6
Q ss_pred ccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCC
Q 021362 95 LPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQ 137 (313)
Q Consensus 95 ~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~ 137 (313)
.+++++ |.+.+|++++|+|+||+|||||+++|+|+.. |+
T Consensus 157 ~aID~l-~~I~~GqrigI~G~sG~GKSTLl~~I~g~~~---~d 195 (451)
T PRK05688 157 RSINGL-LTVGRGQRLGLFAGTGVGKSVLLGMMTRFTE---AD 195 (451)
T ss_pred eeecce-EEecCCcEEEEECCCCCCHHHHHHHHhCCCC---CC
Confidence 489999 9999999999999999999999999999887 66
|
|
| >TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN | Back alignment and domain information |
|---|
Probab=98.05 E-value=4.7e-06 Score=71.23 Aligned_cols=26 Identities=35% Similarity=0.567 Sum_probs=24.2
Q ss_pred CcEEEEECCCCCcHHHHHHHHHHHhc
Q 021362 107 KHIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 107 Geiv~l~GpNGsGKSTLlk~l~gl~~ 132 (313)
|++++|+||||||||||++.|++++.
T Consensus 1 ~~~~~i~G~sGsGKttl~~~l~~~~~ 26 (179)
T TIGR02322 1 GRLIYVVGPSGAGKDTLLDYARARLA 26 (179)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcC
Confidence 67899999999999999999999885
|
Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP. |
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 313 | ||||
| 3c8u_A | 208 | Crystal Structure Of Putative Fructose Transport Sy | 4e-17 | ||
| 2ga8_A | 359 | Crystal Structure Of Yfh7 From Saccharomyces Cerevi | 1e-14 |
| >pdb|3C8U|A Chain A, Crystal Structure Of Putative Fructose Transport System Kinase (Yp_612366.1) From Silicibacter Sp. Tm1040 At 1.95 A Resolution Length = 208 | Back alignment and structure |
|
| >pdb|2GA8|A Chain A, Crystal Structure Of Yfh7 From Saccharomyces Cerevisiae: A Putative P-Loop Containing Kinase With A Circular Permutation. Length = 359 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP} Length = 208 | Back alignment and structure |
|---|
Score = 221 bits (566), Expect = 1e-72
Identities = 66/223 (29%), Positives = 102/223 (45%), Gaps = 20/223 (8%)
Query: 86 VYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQ 145
AL Q +L L + +V L+G PG+GKSTL+ + ++
Sbjct: 3 TLAALCQGVL--ERLDPRQPGRQLVALSGAPGSGKSTLSNPLAAALSAQGLP-------- 52
Query: 146 VKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQGSVY 205
A V+PMDGFHL L+ P+ R+GAP TF+ L++Q V
Sbjct: 53 ------AEVVPMDGFHLDNRLLE----PRGLLPRKGAPETFDFEGFQRLCHALKHQERVI 102
Query: 206 APSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEKWFIEVDLDTAM 265
P FD + VG + +V I++GNYL D W+D+++++D +EV +
Sbjct: 103 YPLFDRARDIAIAGAAEVGPECRVAIIEGNYLLFDAPGWRDLTAIWDVSIRLEVPMADLE 162
Query: 266 QRVLKRHISTGKPPDVAKWRIEYNDRPNAELIMKSKKNADLVI 308
R+++R + G D A R + ND NA I ++ ADL
Sbjct: 163 ARLVQRWLDHGLNHDAAVARAQGNDLANARAIEAARLPADLTW 205
|
| >2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A* Length = 359 | Back alignment and structure |
|---|
Score = 212 bits (540), Expect = 8e-67
Identities = 63/306 (20%), Positives = 108/306 (35%), Gaps = 47/306 (15%)
Query: 43 RRNTNAQPVFGKTRSLVQNKTSLKVLCSQQREIPVVEARCMDEVYDALAQRLLPTSALAS 102
+ + + + ++ E+ + D V D Q P A
Sbjct: 58 EHPNVIEVNDRLKPMVNLVDSLKTLQPNKVAEMIENQGLFKDHVEDVNFQ---PVKYSAL 114
Query: 103 NVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHL 162
N + + G + A V +N + S ++A ++PMDGFHL
Sbjct: 115 TSNNEECTAVVARGGTANAIRIAAVDNPVNVNKLAQDS--------INIAQIVPMDGFHL 166
Query: 163 YLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--------------------- 201
LD +DP+ AH RRG+P TF+ L K L
Sbjct: 167 SRRCLDLFKDPQTAHKRRGSPSTFDSNNFLQLCKILAKTSLCKVSSHHKFYSTSSVFEKL 226
Query: 202 --------GSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253
++ P F+H + DP D + ++VI++G YL D WK + +
Sbjct: 227 SKTFSQTIPDIFVPGFNHALKDPTPDQYCISKFTRIVILEGLYLLYDQENWKKIYKTLAD 286
Query: 254 K-----WFIEVDLDTAMQRVLKRHISTGKPPDV--AKWRIEYNDRPNAELIMKSKKNADL 306
+ I++D + +RV KRH+ +G + + + ND N I D
Sbjct: 287 TGALLVYKIDIDYEATEERVAKRHLQSGLVTTIAEGREKFRSNDLLNGRDIDNHLIKVDN 346
Query: 307 VIKSID 312
++ +
Sbjct: 347 IVHIRN 352
|
| >2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A* Length = 359 | Back alignment and structure |
|---|
Score = 48.5 bits (115), Expect = 1e-06
Identities = 22/89 (24%), Positives = 38/89 (42%), Gaps = 3/89 (3%)
Query: 87 YDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQV 146
LA +L N + V L G PG+GKST+A E+ + IN+ + S + +
Sbjct: 4 THKLADDVLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQIINEKYHTFLSEHPNVI 63
Query: 147 KP--PDVATVLPMDGFH-LYLSQLDAMED 172
+ V +D L +++ M +
Sbjct: 64 EVNDRLKPMVNLVDSLKTLQPNKVAEMIE 92
|
| >1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A* Length = 308 | Back alignment and structure |
|---|
Score = 132 bits (334), Expect = 9e-37
Identities = 39/254 (15%), Positives = 85/254 (33%), Gaps = 47/254 (18%)
Query: 87 YDALAQRLLPTSALASNVNVKH---IVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFD 143
Y + R N + I+ +AG GKST A + +++ +
Sbjct: 57 YISSNLRRQAVLEQFLGTNGQRIPYIISIAGSVAVGKSTTARVLQALLSRWPEHRR---- 112
Query: 144 SQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN-QG 202
++ DGF L + ++G P +++ L+ + +L++
Sbjct: 113 --------VELITTDGFLHPNQVLKE----RGLMKKKGFPESYDMHRLVKFVSDLKSGVP 160
Query: 203 SVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLD------GGVWKDVSSMFDEKWF 256
+V AP + H + D + D +Q ++I++G + VS D +
Sbjct: 161 NVTAPVYSHLIYDVIPDGDKTVVQPDILILEGLNVLQSGMDYPHDPHHVFVSDFVDFSIY 220
Query: 257 IEVDLDTAMQRVLKRHISTGKPP--DVAKWRIEYND------------------RPNAEL 296
++ D + R + + D + Y N +
Sbjct: 221 VDAPEDLLQTWYINRFLKFREGAFTDPDSYFHNYAKLTKEEAIKTAMTLWKEINWLNLKQ 280
Query: 297 -IMKSKKNADLVIK 309
I+ +++ A L++
Sbjct: 281 NILPTRERASLILT 294
|
| >3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A* Length = 312 | Back alignment and structure |
|---|
Score = 126 bits (317), Expect = 3e-34
Identities = 43/240 (17%), Positives = 86/240 (35%), Gaps = 39/240 (16%)
Query: 92 QRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDV 151
L + V I+G+AG GKST A + + +
Sbjct: 75 AEFLGEPQQNPDRPVPFIIGVAGSVAVGKSTTARVLQALLARWDHHPR------------ 122
Query: 152 ATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN-QGSVYAPSFD 210
++ DGF ++L + R+G P ++N L+ + ++++ AP +
Sbjct: 123 VDLVTTDGFLYPNAELQR----RNLMHRKGFPESYNRRALMRFVTSVKSGSDYACAPVYS 178
Query: 211 HGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEKWFIEVDLDTAMQRVLK 270
H D + V ++I++G + G VS +FD +++ ++ Q +
Sbjct: 179 HLHYDIIPGAEQVVRHPDILILEGLNVLQTGP-TLMVSDLFDFSLYVDARIEDIEQWYVS 237
Query: 271 RHISTGKP--------------------PDVAKWRIEYNDRPNA-ELIMKSKKNADLVIK 309
R ++ A+ +RPN E I+ ++ A LV++
Sbjct: 238 RFLAMRTTAFADPESHFHHYAAFSDSQAVVAAREIWRTINRPNLVENILPTRPRATLVLR 297
|
| >3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii} Length = 321 | Back alignment and structure |
|---|
Score = 125 bits (315), Expect = 6e-34
Identities = 47/254 (18%), Positives = 86/254 (33%), Gaps = 47/254 (18%)
Query: 87 YDALAQRLLPTSALASNVNVKH---IVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFD 143
Y Q L + I+G+AG GKST + + +++
Sbjct: 69 YVTARQTLQQATYQFLGKPEPKVPYIIGIAGSVAVGKSTTSRVLKALLSRWPDHPN---- 124
Query: 144 SQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN-QG 202
V+ DGF ++L+ + R+G P +++ LL L +++ Q
Sbjct: 125 --------VEVITTDGFLYSNAKLEK----QGLMKRKGFPESYDMPSLLRVLNAIKSGQR 172
Query: 203 SVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDG------GVWKDVSSMFDEKWF 256
+V P + H D V + Q +VI++G + G + VS FD F
Sbjct: 173 NVRIPVYSHHYYDIVRGQYEIVDQPDIVILEGLNILQTGVRKTLQQLQVFVSDFFDFSLF 232
Query: 257 IEVDLDTAMQRVLKRHI----STGKPPDVAKWRIEYNDRPNA-----------------E 295
++ + + R + +T K P + E
Sbjct: 233 VDAQAQVIQKWYIDRVLSFWRTTFKDPHSYFHYLTQMSETEVAAFAKHVWNEINKVNLME 292
Query: 296 LIMKSKKNADLVIK 309
I+ K A L+++
Sbjct: 293 NILPYKNRAQLILE 306
|
| >1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6 Length = 201 | Back alignment and structure |
|---|
Score = 98.2 bits (245), Expect = 9e-25
Identities = 31/228 (13%), Positives = 77/228 (33%), Gaps = 35/228 (15%)
Query: 83 MDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSF 142
+ + D L + +L A + ++G+ G +GK+TLA ++ + + +
Sbjct: 3 LRDRIDFLCKTIL-----AIKTAGRLVLGIDGLSRSGKTTLANQLSQTLREQGIS----- 52
Query: 143 DSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFN-PLLLLNCLKNLRNQ 201
V MD + ++ + + ++ L + L+
Sbjct: 53 ---------VCVFHMDDHIVERAKRYHTGNEE---WFEYYYLQWDVEWLTHQLFRQLKAS 100
Query: 202 GSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEKWFIEVDL 261
+ P +DH + + + +++++G +L K+ FD +++
Sbjct: 101 HQLTLPFYDHETDTHSKRTVYLS-DSDMIMIEGVFLQR-----KEWRPFFDFVVYLDCPR 154
Query: 262 DTAMQRVLKRHISTGKPPDVAKWRIEYND-RPNAELIMKSKKNADLVI 308
+ R + ++ K+ Y + K AD+V
Sbjct: 155 EIRFARENDQV-----KQNIQKFINRYWKAEDYYLETEEPIKRADVVF 197
|
| >2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A* Length = 245 | Back alignment and structure |
|---|
Score = 87.1 bits (216), Expect = 2e-20
Identities = 40/205 (19%), Positives = 87/205 (42%), Gaps = 20/205 (9%)
Query: 109 IVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLD 168
++G++G +GKST+ +++ + + + + +L D F+ L+
Sbjct: 27 LIGVSGGTASGKSTVCEKIMELLGQNEVE---------QRQRKVVILSQDRFYKVLTA-- 75
Query: 169 AMEDPKEAHARRG--APWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQ 226
+ K + P F+ L+ LKN+ +V P++D + + +V
Sbjct: 76 -EQKAKALKGQYNFDHPDAFDNDLMHRTLKNIVEGKTVEVPTYDFVTHSRLPETTVVY-P 133
Query: 227 HKVVIVDGNYLFLDGGVWKDVSSMFDEKWFIEVDLDTAMQRVLKRHISTGKPPDVAKWRI 286
VV+ +G +F +++ MF + F++ D D + R + R + G+ + +
Sbjct: 134 ADVVLFEGILVFYS----QEIRDMFHLRLFVDTDSDVRLSRRVLRDVRRGRDLEQILTQY 189
Query: 287 EYNDRPNAEL-IMKSKKNADLVIKS 310
+P E + +KK AD++I
Sbjct: 190 TTFVKPAFEEFCLPTKKYADVIIPR 214
|
| >1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A* Length = 252 | Back alignment and structure |
|---|
Score = 86.8 bits (215), Expect = 3e-20
Identities = 45/204 (22%), Positives = 86/204 (42%), Gaps = 17/204 (8%)
Query: 109 IVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLD 168
++G++G +GKS++ A++V+ + + + +L D F+ L+
Sbjct: 24 LIGVSGGTASGKSSVCAKIVQLLGQ---------NEVDYRQKQVVILSQDSFYRVLTSEQ 74
Query: 169 AMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHK 228
+ P F+ L+L LK + +V P +D E+ + V
Sbjct: 75 -KAKALKGQFNFDHPDAFDNELILKTLKEITEGKTVQIPVYDFVSHSRKEETVTVY-PAD 132
Query: 229 VVIVDGNYLFLDGGVWKDVSSMFDEKWFIEVDLDTAMQRVLKRHIST-GKPPDVAKWRIE 287
VV+ +G F ++V +F K F++ D DT + R + R IS G+ + +
Sbjct: 133 VVLFEGILAFYS----QEVRDLFQMKLFVDTDADTRLSRRVLRDISERGRDLEQILSQYI 188
Query: 288 YNDRPNAEL-IMKSKKNADLVIKS 310
+P E + +KK AD++I
Sbjct: 189 TFVKPAFEEFCLPTKKYADVIIPR 212
|
| >2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A* Length = 207 | Back alignment and structure |
|---|
Score = 78.7 bits (194), Expect = 2e-17
Identities = 32/204 (15%), Positives = 70/204 (34%), Gaps = 44/204 (21%)
Query: 109 IVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLD 168
I+G++G +GK+TLA + + K P +V+ D F S++
Sbjct: 23 IIGISGVTNSGKTTLA----KNLQKHLPN--------------CSVISQDDFFKPESEI- 63
Query: 169 AMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHK 228
E K + N +++ + S D +
Sbjct: 64 --ETDKNGFLQYDVLEALNMEKMMSAISCWMESARHSVVSTDQESAEE----------IP 111
Query: 229 VVIVDGNYLFLDGGVWKDVSSMFDEKWFIEVDLDTAMQRVLKRHISTGKPPDVAKWRIEY 288
++I++G LF K + ++++ +F+ + + +R R +PPD + +
Sbjct: 112 ILIIEGFLLFNY----KPLDTIWNRSYFLTIPYEECKRR---RSTRVYQPPDSPGY---F 161
Query: 289 ND--RPNAEL-IMKSKKNADLVIK 309
+ P + + V+
Sbjct: 162 DGHVWPMYLKYRQEMQDITWEVVY 185
|
| >3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A* Length = 211 | Back alignment and structure |
|---|
Score = 75.4 bits (186), Expect = 2e-16
Identities = 45/209 (21%), Positives = 79/209 (37%), Gaps = 37/209 (17%)
Query: 109 IVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLD 168
++G+AG +GK+TLA + + A + +V +LPMD ++ L L
Sbjct: 8 VIGIAGGTASGKTTLA----QAL-------ARTLGERV------ALLPMDHYYKDLGHLP 50
Query: 169 AMEDPKEAHARRG-----APWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILV 223
R P F+ L L + L V P +D V
Sbjct: 51 --------LEERLRVNYDHPDAFDLALYLEHAQALLRGLPVEMPVYDFRAYTRSPRRTPV 102
Query: 224 GLQHKVVIVDGNYLFLDGGVWKDVSSMFDEKWFIEVDLDTAMQRVLKRHIST-GKPPDVA 282
VVI++G + K++ + D K F++ D D R LKR + G+ +
Sbjct: 103 R-PAPVVILEGILVLYP----KELRDLMDLKVFVDADADERFIRRLKRDVLERGRSLEGV 157
Query: 283 KWRIEYNDRPNAEL-IMKSKKNADLVIKS 310
+ +P + +K+ AD+++
Sbjct: 158 VAQYLEQVKPMHLHFVEPTKRYADVIVPR 186
|
| >1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6 Length = 290 | Back alignment and structure |
|---|
Score = 73.5 bits (180), Expect = 3e-15
Identities = 31/220 (14%), Positives = 66/220 (30%), Gaps = 31/220 (14%)
Query: 106 VKH-IVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYL 164
KH I+ + G GAG ST V ++I+ ++ A + D FH +
Sbjct: 3 KKHPIISVTGSSGAGTST----VKHTFDQIFRREGVK----------AVSIEGDAFHRFN 48
Query: 165 SQLDAMEDPKEAHARRGAPWTFNPL-----LLLNCLKNLRNQGSVYAPSFDHGVGDPVED 219
E + A F+ L + G ++ H +
Sbjct: 49 RADMKAELDRRYAAGDATFSHFSYEANELKELERVFREYGETGQGRTRTYVHDDAEAART 108
Query: 220 DILVGL---------QHKVVIVDGNYLFLDGGVWKDVSSMFDEKWFIEVDLDTAMQRVLK 270
+ G ++ +G + + +++ + D K + ++ + +
Sbjct: 109 GVAPGNFTDWRDFDSDSHLLFYEGLHGAVVNSE-VNIAGLADLKIGVVPVINLEWIQKIH 167
Query: 271 RHIST-GKPPDVAKWRIEYNDRPNAELIMKSKKNADLVIK 309
R +T G + I I+ D+ +
Sbjct: 168 RDRATRGYTTEAVTDVILRRMHAYVHCIVPQFSQTDINFQ 207
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 65.3 bits (158), Expect = 7e-12
Identities = 69/382 (18%), Positives = 114/382 (29%), Gaps = 96/382 (25%)
Query: 1 MDVSSLSTTPRACLSSSSTESTPLKRGELPSGHDGFLSFSWIRRNTNAQPV--FGKTRSL 58
D + P++ LS + G L W + + V F + L
Sbjct: 33 FDCKDVQDMPKSILSKEEIDHII----MSKDAVSGTLRLFWTLLSKQEEMVQKFVEE-VL 87
Query: 59 VQN----KTSLKVLCSQQREIPVVEARCMDEVY---DALAQ----RLLPTSAL---ASNV 104
N + +K Q + + D +Y A+ RL P L +
Sbjct: 88 RINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLEL 147
Query: 105 NVKHIVGLAGPPGAGKSTLAAEVVR--RI-----NKI-WPQKASSFDSQVKPPDVATVLP 156
V + G G+GK+ +A +V ++ KI W + + P V +L
Sbjct: 148 RPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFW----LNLKNCNSPETVLEMLQ 203
Query: 157 MDGFHL---YLSQLDAMEDPK-EAHARRGAPWTFNPLLLL----NCLKNLRNQGSVYAP- 207
+ + + S+ D + K H+ + LL NCL L N V
Sbjct: 204 KLLYQIDPNWTSRSDHSSNIKLRIHSIQAE---LRRLLKSKPYENCLLVLLN---VQNAK 257
Query: 208 ---SFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEKWFIEVD---- 260
+F+ IL+ + K V D FL +S +
Sbjct: 258 AWNAFNLSC------KILLTTRFKQVT-D----FLSAATTTHISLDHHSMTLTPDEVKSL 306
Query: 261 ----LDTAMQRVLKRHISTGKP-----------PDVAKW-RIEYNDRPNAELIMKSKKNA 304
LD Q L R + T P +A W ++ + I++S N
Sbjct: 307 LLKYLDCRPQD-LPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNV 365
Query: 305 -----------DLVI--KSIDI 313
L + S I
Sbjct: 366 LEPAEYRKMFDRLSVFPPSAHI 387
|
| >1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6 Length = 290 | Back alignment and structure |
|---|
Score = 60.4 bits (145), Expect = 1e-10
Identities = 35/213 (16%), Positives = 68/213 (31%), Gaps = 28/213 (13%)
Query: 109 IVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLD 168
+ +GP G+GKS + ++ + + + + S +D F+L
Sbjct: 33 FIFFSGPQGSGKSFTSIQIYNHLMEKYGGEKSIG-----------YASIDDFYLTHEDQL 81
Query: 169 AMEDPKEAH---ARRGAPWTFNPLLLLNCLKNLRNQGS----------VYAPSFDHGVGD 215
+ + + + RG P T + LL L + N Y S G GD
Sbjct: 82 KLNEQFKNNKLLQGRGLPGTHDMKLLQEVLNTIFNNNEHPDQDTVVLPKYDKSQFKGEGD 141
Query: 216 PVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEKWFIEVDL----DTAMQRVLKR 271
+ L + I++G +L + + ++ ++V+ + +
Sbjct: 142 RCPTGQKIKLPVDIFILEGWFLGFNPILQGIENNDLLTGDMVDVNAKLFFYSDLLWRNPE 201
Query: 272 HISTGKPPDVAKWRIEYNDRPNAELIMKSKKNA 304
S G Y R E + SK
Sbjct: 202 IKSLGIVFTTDNINNVYGWRLQQEHELISKVGK 234
|
| >2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25 Length = 189 | Back alignment and structure |
|---|
Score = 42.2 bits (99), Expect = 5e-05
Identities = 22/186 (11%), Positives = 50/186 (26%), Gaps = 44/186 (23%)
Query: 107 KHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQ 166
K + + GP G GKST + +++ + + D + +
Sbjct: 2 KKLYIITGPAGVGKSTTCKRLAAQLDN------------------SAYIEGDIINHMVVG 43
Query: 167 LDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQ 226
P E+ W + + N + D+ + + +Q
Sbjct: 44 --GYRPPWESDELLALTWK----NITDLTVNFLLAQNDVV--LDYIAFPDEAEALAQTVQ 95
Query: 227 HKVVIVDGNYLFLDGGVWKDVSSMFDEKWFIEVDLDTAMQRVLKRHISTGKPPDVAKWRI 286
KV V+ ++ L + + ++R R +
Sbjct: 96 AKVDDVEIRFIIL------------------WTNREELLRRDALRKKDEQMGERCLELVE 137
Query: 287 EYNDRP 292
E+ +
Sbjct: 138 EFESKG 143
|
| >2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10 Length = 341 | Back alignment and structure |
|---|
Score = 42.5 bits (100), Expect = 1e-04
Identities = 17/59 (28%), Positives = 28/59 (47%), Gaps = 4/59 (6%)
Query: 73 REIPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRI 131
+ + +VE+R + AL+ +LL A+ +G+ G PGAGKST +
Sbjct: 26 QAMTLVESR--HPRHQALSTQLL--DAIMPYCGNTLRLGVTGTPGAGKSTFLEAFGMLL 80
|
| >2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A* Length = 337 | Back alignment and structure |
|---|
Score = 42.4 bits (100), Expect = 1e-04
Identities = 16/59 (27%), Positives = 25/59 (42%), Gaps = 4/59 (6%)
Query: 73 REIPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRI 131
R I + E+R + A + L+ A+ VG+ G PG GKST + +
Sbjct: 25 RAITLAESR--RADHRAAVRDLI--DAVLPQTGRAIRVGITGVPGVGKSTTIDALGSLL 79
|
| >3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 3nxs_A* 3tk1_A* Length = 355 | Back alignment and structure |
|---|
Score = 41.8 bits (98), Expect = 2e-04
Identities = 19/59 (32%), Positives = 27/59 (45%), Gaps = 4/59 (6%)
Query: 73 REIPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRI 131
R I +VE+ + AQ+LL L + H VG+ G PG GKST + +
Sbjct: 49 RAITLVEST--RPDHREQAQQLL--LRLLPDSGNAHRVGITGVPGVGKSTAIEALGMHL 103
|
| >2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens} Length = 349 | Back alignment and structure |
|---|
Score = 40.2 bits (94), Expect = 5e-04
Identities = 12/49 (24%), Positives = 18/49 (36%)
Query: 83 MDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRI 131
+ + + VGL+GPPGAGKST + +
Sbjct: 50 AQVLLQKVLLYHREQEQSNKGKPLAFRVGLSGPPGAGKSTFIEYFGKML 98
|
| >3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A Length = 179 | Back alignment and structure |
|---|
Score = 38.7 bits (90), Expect = 7e-04
Identities = 34/203 (16%), Positives = 63/203 (31%), Gaps = 51/203 (25%)
Query: 109 IVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLD 168
++ + G PG+GKS A + R G + D
Sbjct: 3 VILITGMPGSGKSEFAKLLKER----------------------------GAK-VIVMSD 33
Query: 169 AMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHK 228
+ ++ ++ P L++ K LR D V +++ H
Sbjct: 34 VV---RKRYSIEAKP----GERLMDFAKRLREIYG------DGVVARLCVEELG-TSNHD 79
Query: 229 VVIVDGNYLFLDGGVWKDVSSMFDEKWFIEVDLDTAMQRVLKRHISTGKPPDVAKWRIEY 288
+V+ DG + +K + + +R+++R D +K E
Sbjct: 80 LVVFDGVRSLAEVEEFKRLLGDSVYIVAVHSPPKIRYKRMIER-----LRSDDSKEISEL 134
Query: 289 NDRPNAEL---IMKSKKNADLVI 308
R EL I + AD +I
Sbjct: 135 IRRDREELKLGIGEVIAMADYII 157
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 313 | |||
| 3tui_C | 366 | Methionine import ATP-binding protein METN; ABC-tr | 100.0 | |
| 3fvq_A | 359 | Fe(3+) IONS import ATP-binding protein FBPC; nucle | 100.0 | |
| 3rlf_A | 381 | Maltose/maltodextrin import ATP-binding protein M; | 100.0 | |
| 2it1_A | 362 | 362AA long hypothetical maltose/maltodextrin trans | 100.0 | |
| 1z47_A | 355 | CYSA, putative ABC-transporter ATP-binding protein | 100.0 | |
| 2yyz_A | 359 | Sugar ABC transporter, ATP-binding protein; sugar | 100.0 | |
| 1v43_A | 372 | Sugar-binding transport ATP-binding protein; ATPas | 100.0 | |
| 3gfo_A | 275 | Cobalt import ATP-binding protein CBIO 1; structur | 100.0 | |
| 1g29_1 | 372 | MALK, maltose transport protein MALK; ATPase, acti | 100.0 | |
| 2olj_A | 263 | Amino acid ABC transporter; ABC domain, ATPase, hy | 100.0 | |
| 1vpl_A | 256 | ABC transporter, ATP-binding protein; TM0544, stru | 100.0 | |
| 4g1u_C | 266 | Hemin import ATP-binding protein HMUV; membrane tr | 100.0 | |
| 3tif_A | 235 | Uncharacterized ABC transporter ATP-binding prote; | 100.0 | |
| 1b0u_A | 262 | Histidine permease; ABC transporter, transport pro | 100.0 | |
| 2pcj_A | 224 | ABC transporter, lipoprotein-releasing system ATP- | 100.0 | |
| 1oxx_K | 353 | GLCV, glucose, ABC transporter, ATP binding protei | 100.0 | |
| 1g6h_A | 257 | High-affinity branched-chain amino acid transport | 100.0 | |
| 1ji0_A | 240 | ABC transporter; ATP binding protein, structural g | 100.0 | |
| 3d31_A | 348 | Sulfate/molybdate ABC transporter, ATP-binding pro | 100.0 | |
| 2ihy_A | 279 | ABC transporter, ATP-binding protein; ATPase, ABC | 100.0 | |
| 2yz2_A | 266 | Putative ABC transporter ATP-binding protein TM_0; | 100.0 | |
| 2onk_A | 240 | Molybdate/tungstate ABC transporter, ATP-binding p | 100.0 | |
| 1sgw_A | 214 | Putative ABC transporter; structural genomics, P p | 100.0 | |
| 2nq2_C | 253 | Hypothetical ABC transporter ATP-binding protein H | 100.0 | |
| 2d2e_A | 250 | SUFC protein; ABC-ATPase, SUF protein, 310-helix, | 100.0 | |
| 2zu0_C | 267 | Probable ATP-dependent transporter SUFC; iron-sulf | 100.0 | |
| 1mv5_A | 243 | LMRA, multidrug resistance ABC transporter ATP-bin | 100.0 | |
| 2ixe_A | 271 | Antigen peptide transporter 1; ABC ATPase, hydrola | 100.0 | |
| 2ff7_A | 247 | Alpha-hemolysin translocation ATP-binding protein | 100.0 | |
| 3nh6_A | 306 | ATP-binding cassette SUB-family B member 6, mitoc; | 100.0 | |
| 2pjz_A | 263 | Hypothetical protein ST1066; ATP binding protein, | 100.0 | |
| 2qi9_C | 249 | Vitamin B12 import ATP-binding protein BTUD; inner | 100.0 | |
| 2cbz_A | 237 | Multidrug resistance-associated protein 1; ABC pro | 100.0 | |
| 2pze_A | 229 | Cystic fibrosis transmembrane conductance regulat; | 100.0 | |
| 2ghi_A | 260 | Transport protein; multidrug resistance protein, M | 100.0 | |
| 3gd7_A | 390 | Fusion complex of cystic fibrosis transmembrane co | 100.0 | |
| 3b5x_A | 582 | Lipid A export ATP-binding/permease protein MSBA; | 100.0 | |
| 3b60_A | 582 | Lipid A export ATP-binding/permease protein MSBA; | 100.0 | |
| 2yl4_A | 595 | ATP-binding cassette SUB-family B member 10, mitoc | 100.0 | |
| 3qf4_A | 587 | ABC transporter, ATP-binding protein; multidrug tr | 99.98 | |
| 3qf4_B | 598 | Uncharacterized ABC transporter ATP-binding prote | 99.98 | |
| 4a82_A | 578 | Cystic fibrosis transmembrane conductance regulat; | 99.98 | |
| 2bbs_A | 290 | Cystic fibrosis transmembrane conductance regulato | 99.98 | |
| 3aez_A | 312 | Pantothenate kinase; transferase, homodimer, COA b | 99.97 | |
| 4f4c_A | 1321 | Multidrug resistance protein PGP-1; ABC transporte | 99.97 | |
| 3bk7_A | 607 | ABC transporter ATP-binding protein; ABC ATPase, i | 99.97 | |
| 1yqt_A | 538 | RNAse L inhibitor; ATP-binding cassette, ribosome | 99.97 | |
| 3ozx_A | 538 | RNAse L inhibitor; ATP binding cassette protein, h | 99.96 | |
| 4f4c_A | 1321 | Multidrug resistance protein PGP-1; ABC transporte | 99.96 | |
| 3g5u_A | 1284 | MCG1178, multidrug resistance protein 1A; P-glycop | 99.96 | |
| 3g5u_A | 1284 | MCG1178, multidrug resistance protein 1A; P-glycop | 99.96 | |
| 2iw3_A | 986 | Elongation factor 3A; acetylation, ATP-binding, pr | 99.96 | |
| 3j16_B | 608 | RLI1P; ribosome recycling, translation, eukarya, r | 99.95 | |
| 3bk7_A | 607 | ABC transporter ATP-binding protein; ABC ATPase, i | 99.95 | |
| 1yqt_A | 538 | RNAse L inhibitor; ATP-binding cassette, ribosome | 99.95 | |
| 3ux8_A | 670 | Excinuclease ABC, A subunit; UVRA, nucleotide exci | 99.94 | |
| 2iw3_A | 986 | Elongation factor 3A; acetylation, ATP-binding, pr | 99.94 | |
| 2jeo_A | 245 | Uridine-cytidine kinase 1; UCK, transferase, ATP-b | 99.93 | |
| 3j16_B | 608 | RLI1P; ribosome recycling, translation, eukarya, r | 99.93 | |
| 2npi_A | 460 | Protein CLP1; CLP1-PCF11 complex, ATP binding, ter | 99.92 | |
| 3ux8_A | 670 | Excinuclease ABC, A subunit; UVRA, nucleotide exci | 99.9 | |
| 3c8u_A | 208 | Fructokinase; YP_612366.1, putative fructose trans | 99.9 | |
| 3ozx_A | 538 | RNAse L inhibitor; ATP binding cassette protein, h | 99.9 | |
| 3b85_A | 208 | Phosphate starvation-inducible protein; PHOH2, ATP | 99.89 | |
| 2vf7_A | 842 | UVRA2, excinuclease ABC, subunit A.; DNA-binding p | 99.87 | |
| 2r6f_A | 972 | Excinuclease ABC subunit A; UVRA, nucleotide excis | 99.87 | |
| 3asz_A | 211 | Uridine kinase; cytidine phosphorylation, transfer | 99.86 | |
| 3pih_A | 916 | Uvrabc system protein A; hydrolase, ABC ATPase, DN | 99.85 | |
| 2ygr_A | 993 | Uvrabc system protein A; hydrolase, nucleotide exc | 99.85 | |
| 2v9p_A | 305 | Replication protein E1; AAA+ molecular motor, DNA | 99.85 | |
| 1sq5_A | 308 | Pantothenate kinase; P-loop, transferase; HET: PAU | 99.82 | |
| 4gp7_A | 171 | Metallophosphoesterase; polynucleotide kinase phos | 99.82 | |
| 3tqc_A | 321 | Pantothenate kinase; biosynthesis of cofactors, pr | 99.81 | |
| 3sop_A | 270 | Neuronal-specific septin-3; hydrolase; HET: GDP; 2 | 99.81 | |
| 2ga8_A | 359 | Hypothetical 39.9 kDa protein; YFR007W, YFH7, unkn | 99.81 | |
| 1tq4_A | 413 | IIGP1, interferon-inducible GTPase; interferon gam | 99.8 | |
| 4aby_A | 415 | DNA repair protein RECN; hydrolase, double strand | 99.8 | |
| 1z6g_A | 218 | Guanylate kinase; structural genomics, SGC, struct | 99.79 | |
| 2dpy_A | 438 | FLII, flagellum-specific ATP synthase; beta barrel | 99.77 | |
| 1znw_A | 207 | Guanylate kinase, GMP kinase; ATP:GMP-phosphotrans | 99.77 | |
| 3b9q_A | 302 | Chloroplast SRP receptor homolog, alpha subunit CP | 99.76 | |
| 2pt7_A | 330 | CAG-ALFA; ATPase, protein-protein complex, type IV | 99.74 | |
| 1odf_A | 290 | YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser | 99.74 | |
| 1ye8_A | 178 | Protein THEP1, hypothetical UPF0334 kinase-like pr | 99.74 | |
| 3qf7_A | 365 | RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1. | 99.72 | |
| 2obl_A | 347 | ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O | 99.71 | |
| 2og2_A | 359 | Putative signal recognition particle receptor; nuc | 99.71 | |
| 2qnr_A | 301 | Septin-2, protein NEDD5; structural genomics conso | 99.68 | |
| 1htw_A | 158 | HI0065; nucleotide-binding fold, structural genomi | 99.65 | |
| 1e69_A | 322 | Chromosome segregation SMC protein; structural mai | 99.65 | |
| 2o8b_B | 1022 | DNA mismatch repair protein MSH6; DNA damage respo | 99.62 | |
| 1tf7_A | 525 | KAIC; homohexamer, hexamer, circadian clock protei | 99.6 | |
| 1s96_A | 219 | Guanylate kinase, GMP kinase; E.coli, dimer, SAD, | 99.6 | |
| 2eyu_A | 261 | Twitching motility protein PILT; pilus retraction | 99.59 | |
| 1rj9_A | 304 | FTSY, signal recognition protein; SRP-GTPase domai | 99.54 | |
| 2qag_C | 418 | Septin-7; cell cycle, cell division, GTP-binding, | 99.54 | |
| 1p9r_A | 418 | General secretion pathway protein E; bacterial typ | 99.54 | |
| 3szr_A | 608 | Interferon-induced GTP-binding protein MX1; interf | 99.53 | |
| 1ewq_A | 765 | DNA mismatch repair protein MUTS; multiple domains | 99.52 | |
| 1tf7_A | 525 | KAIC; homohexamer, hexamer, circadian clock protei | 99.48 | |
| 1cr0_A | 296 | DNA primase/helicase; RECA-type protein fold, tran | 99.48 | |
| 2ehv_A | 251 | Hypothetical protein PH0186; KAIC, RECA ATPase, un | 99.47 | |
| 2i3b_A | 189 | HCR-ntpase, human cancer-related ntpase; AAA, ross | 99.46 | |
| 3thx_B | 918 | DNA mismatch repair protein MSH3; ABC family ATPas | 99.43 | |
| 2rcn_A | 358 | Probable GTPase ENGC; YJEQ, circularly permuted, G | 99.42 | |
| 1pui_A | 210 | ENGB, probable GTP-binding protein ENGB; structura | 99.41 | |
| 2o5v_A | 359 | DNA replication and repair protein RECF; ABC ATPas | 99.4 | |
| 4a74_A | 231 | DNA repair and recombination protein RADA; hydrola | 99.4 | |
| 2gza_A | 361 | Type IV secretion system protein VIRB11; ATPase, h | 99.38 | |
| 2yv5_A | 302 | YJEQ protein; hydrolase, GTPase, permutation, stru | 99.38 | |
| 1rz3_A | 201 | Hypothetical protein rbstp0775; MCSG, structural g | 99.37 | |
| 3jvv_A | 356 | Twitching mobility protein; hexameric P-loop ATPas | 99.37 | |
| 3qkt_A | 339 | DNA double-strand break repair RAD50 ATPase; RECA- | 99.36 | |
| 4ad8_A | 517 | DNA repair protein RECN; DNA binding protein, ATPa | 99.36 | |
| 2f1r_A | 171 | Molybdopterin-guanine dinucleotide biosynthesis pr | 99.35 | |
| 2bdt_A | 189 | BH3686; alpha-beta protein, structural genomics, P | 99.33 | |
| 3thx_A | 934 | DNA mismatch repair protein MSH2; ABC family ATPas | 99.33 | |
| 1nlf_A | 279 | Regulatory protein REPA; replicative DNA helicase | 99.33 | |
| 1lw7_A | 365 | Transcriptional regulator NADR; NMN, NMN adenylyl | 99.32 | |
| 2oap_1 | 511 | GSPE-2, type II secretion system protein; hexameri | 99.32 | |
| 3tr0_A | 205 | Guanylate kinase, GMP kinase; purines, pyrimidines | 99.31 | |
| 2qag_B | 427 | Septin-6, protein NEDD5; cell cycle, cell division | 99.3 | |
| 3e70_C | 328 | DPA, signal recognition particle receptor; FTSY, S | 99.3 | |
| 2qm8_A | 337 | GTPase/ATPase; G protein, G3E, metallochaperone, c | 99.29 | |
| 1zp6_A | 191 | Hypothetical protein ATU3015; alpha-beta protein., | 99.27 | |
| 1in4_A | 334 | RUVB, holliday junction DNA helicase RUVB; AAA+-cl | 99.26 | |
| 1pzn_A | 349 | RAD51, DNA repair and recombination protein RAD51, | 99.26 | |
| 3euj_A | 483 | Chromosome partition protein MUKB, linker; MUKB, M | 99.26 | |
| 2yhs_A | 503 | FTSY, cell division protein FTSY; cell cycle, prot | 99.25 | |
| 2w0m_A | 235 | SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus | 99.24 | |
| 2x8a_A | 274 | Nuclear valosin-containing protein-like; nuclear p | 99.23 | |
| 1wb9_A | 800 | DNA mismatch repair protein MUTS; DNA-binding, ATP | 99.22 | |
| 1nij_A | 318 | Hypothetical protein YJIA; structural genomics, P- | 99.22 | |
| 1u0l_A | 301 | Probable GTPase ENGC; permutation, OB-fold, zinc-f | 99.19 | |
| 1iy2_A | 278 | ATP-dependent metalloprotease FTSH; AAA domain fol | 99.18 | |
| 2ewv_A | 372 | Twitching motility protein PILT; pilus retraction | 99.17 | |
| 3pih_A | 916 | Uvrabc system protein A; hydrolase, ABC ATPase, DN | 99.17 | |
| 2bbw_A | 246 | Adenylate kinase 4, AK4; nucleotide kinase, nucleo | 99.16 | |
| 1t9h_A | 307 | YLOQ, probable GTPase ENGC; N-terminal beta-barrel | 99.14 | |
| 1ixz_A | 254 | ATP-dependent metalloprotease FTSH; AAA domain fol | 99.13 | |
| 2qt1_A | 207 | Nicotinamide riboside kinase 1; non-protein kinase | 99.08 | |
| 4e22_A | 252 | Cytidylate kinase; P-loop, CMP/ATP binding, transf | 99.08 | |
| 1qhl_A | 227 | Protein (cell division protein MUKB); SMC, chromos | 99.07 | |
| 2r6f_A | 972 | Excinuclease ABC subunit A; UVRA, nucleotide excis | 99.03 | |
| 1uj2_A | 252 | Uridine-cytidine kinase 2; alpha/beta mononucleoti | 99.02 | |
| 3vaa_A | 199 | Shikimate kinase, SK; structural genomics, center | 99.01 | |
| 3kta_A | 182 | Chromosome segregation protein SMC; structural mai | 99.0 | |
| 2cvh_A | 220 | DNA repair and recombination protein RADB; filamen | 99.0 | |
| 3nwj_A | 250 | ATSK2; P loop, shikimate, nucleoside monophosphate | 98.98 | |
| 3lnc_A | 231 | Guanylate kinase, GMP kinase; ALS collaborative cr | 98.97 | |
| 2ygr_A | 993 | Uvrabc system protein A; hydrolase, nucleotide exc | 98.94 | |
| 1a7j_A | 290 | Phosphoribulokinase; transferase, calvin cycle; 2. | 98.92 | |
| 1vma_A | 306 | Cell division protein FTSY; TM0570, structural gen | 98.9 | |
| 1udx_A | 416 | The GTP-binding protein OBG; TGS domain, riken str | 98.82 | |
| 3uie_A | 200 | Adenylyl-sulfate kinase 1, chloroplastic; rossmann | 98.82 | |
| 3k1j_A | 604 | LON protease, ATP-dependent protease LON; ATP-bind | 98.81 | |
| 2kjq_A | 149 | DNAA-related protein; solution structure, NESG, st | 98.8 | |
| 1sxj_E | 354 | Activator 1 40 kDa subunit; clamp loader, processi | 98.79 | |
| 1ni3_A | 392 | YCHF GTPase, YCHF GTP-binding protein; structural | 98.78 | |
| 2vf7_A | 842 | UVRA2, excinuclease ABC, subunit A.; DNA-binding p | 98.7 | |
| 1ls1_A | 295 | Signal recognition particle protein; FFH, SRP54, S | 98.69 | |
| 1lvg_A | 198 | Guanylate kinase, GMP kinase; transferase; HET: AD | 98.66 | |
| 1f2t_B | 148 | RAD50 ABC-ATPase; DNA double-strand break repair, | 98.66 | |
| 1jjv_A | 206 | Dephospho-COA kinase; P-loop nucleotide-binding fo | 98.63 | |
| 2j41_A | 207 | Guanylate kinase; GMP, GMK, transferase, ATP-bindi | 98.59 | |
| 3a00_A | 186 | Guanylate kinase, GMP kinase; domain movement, dim | 98.57 | |
| 2dhr_A | 499 | FTSH; AAA+ protein, hexameric Zn metalloprotease, | 98.56 | |
| 2px0_A | 296 | Flagellar biosynthesis protein FLHF; SRP GTPase, f | 98.55 | |
| 2p67_A | 341 | LAO/AO transport system kinase; ARGK, structural G | 98.5 | |
| 1kgd_A | 180 | CASK, peripheral plasma membrane CASK; maguk, guan | 98.49 | |
| 3ec2_A | 180 | DNA replication protein DNAC; helicase loader, rep | 98.47 | |
| 1zu4_A | 320 | FTSY; GTPase, signal recognition particle, SRP, re | 98.47 | |
| 2ius_A | 512 | DNA translocase FTSK; nucleotide-binding, chromoso | 98.47 | |
| 3lda_A | 400 | DNA repair protein RAD51; DNA binding protein, ATP | 98.46 | |
| 2if2_A | 204 | Dephospho-COA kinase; alpha-beta protein, structur | 98.41 | |
| 4eun_A | 200 | Thermoresistant glucokinase; putative sugar kinase | 98.38 | |
| 1w1w_A | 430 | Structural maintenance of chromosome 1; cohesin, c | 98.36 | |
| 2vp4_A | 230 | Deoxynucleoside kinase; ATP-binding, DNA synthesis | 98.36 | |
| 1n0w_A | 243 | DNA repair protein RAD51 homolog 1; DNA repair, ho | 98.33 | |
| 1svm_A | 377 | Large T antigen; AAA+ fold, viral protein; HET: AT | 98.33 | |
| 3cr8_A | 552 | Sulfate adenylyltranferase, adenylylsulfate kinase | 98.32 | |
| 3tau_A | 208 | Guanylate kinase, GMP kinase; structural genomics, | 98.31 | |
| 3kta_B | 173 | Chromosome segregation protein SMC; structural mai | 98.29 | |
| 3m6a_A | 543 | ATP-dependent protease LA 1; alpha, beta, ATP-bind | 98.25 | |
| 3t61_A | 202 | Gluconokinase; PSI-biology, structural genomics, p | 98.21 | |
| 2r6a_A | 454 | DNAB helicase, replicative helicase; replication, | 98.21 | |
| 1knq_A | 175 | Gluconate kinase; ALFA/beta structure, transferase | 98.19 | |
| 3ney_A | 197 | 55 kDa erythrocyte membrane protein; structural ge | 98.13 | |
| 1kag_A | 173 | SKI, shikimate kinase I; transferase, structural g | 98.12 | |
| 3r20_A | 233 | Cytidylate kinase; structural genomics, seattle st | 98.11 | |
| 1oix_A | 191 | RAS-related protein RAB-11A; small G protein, intr | 98.11 | |
| 1cke_A | 227 | CK, MSSA, protein (cytidine monophosphate kinase); | 98.08 | |
| 2ffh_A | 425 | Protein (FFH); SRP54, signal recognition particle, | 98.07 | |
| 4eaq_A | 229 | DTMP kinase, thymidylate kinase; structural genomi | 98.06 | |
| 2f6r_A | 281 | COA synthase, bifunctional coenzyme A synthase; 18 | 98.05 | |
| 1j8m_F | 297 | SRP54, signal recognition 54 kDa protein; signalin | 98.02 | |
| 2www_A | 349 | Methylmalonic aciduria type A protein, mitochondri | 98.01 | |
| 3ice_A | 422 | Transcription termination factor RHO; transcriptio | 98.01 | |
| 2pez_A | 179 | Bifunctional 3'-phosphoadenosine 5'- phosphosulfat | 98.0 | |
| 1f2t_A | 149 | RAD50 ABC-ATPase; DNA double-strand break repair, | 97.96 | |
| 1m7g_A | 211 | Adenylylsulfate kinase; APS kinase, transferase, s | 97.96 | |
| 1sxj_C | 340 | Activator 1 40 kDa subunit; clamp loader, processi | 97.96 | |
| 2f9l_A | 199 | RAB11B, member RAS oncogene family; RAB11B GTPase, | 97.94 | |
| 3lw7_A | 179 | Adenylate kinase related protein (ADKA-like); AMP, | 97.94 | |
| 2dr3_A | 247 | UPF0273 protein PH0284; RECA superfamily ATPase, h | 97.92 | |
| 2grj_A | 192 | Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosp | 97.86 | |
| 2yvu_A | 186 | Probable adenylyl-sulfate kinase; transferase, str | 97.85 | |
| 3trf_A | 185 | Shikimate kinase, SK; amino acid biosynthesis, tra | 97.81 | |
| 3t34_A | 360 | Dynamin-related protein 1A, linker, dynamin-relat | 97.81 | |
| 1w1w_A | 430 | Structural maintenance of chromosome 1; cohesin, c | 97.8 | |
| 1y63_A | 184 | LMAJ004144AAA protein; structural genomics, protei | 97.74 | |
| 2qag_A | 361 | Septin-2, protein NEDD5; cell cycle, cell division | 97.73 | |
| 2qor_A | 204 | Guanylate kinase; phosphotransferase, purine metab | 97.7 | |
| 3auy_A | 371 | DNA double-strand break repair RAD50 ATPase; DNA r | 97.67 | |
| 3qks_A | 203 | DNA double-strand break repair RAD50 ATPase; RECA- | 97.66 | |
| 3bh0_A | 315 | DNAB-like replicative helicase; ATPase, replicatio | 97.59 | |
| 4a1f_A | 338 | DNAB helicase, replicative DNA helicase; hydrolase | 97.58 | |
| 3hr8_A | 356 | Protein RECA; alpha and beta proteins (A/B, A+B), | 97.55 | |
| 1f6b_A | 198 | SAR1; gtpases, N-terminal helix, Mg-containing com | 97.54 | |
| 3cm0_A | 186 | Adenylate kinase; ATP-binding, cytoplasm, nucleoti | 97.52 | |
| 1q3t_A | 236 | Cytidylate kinase; nucleotide monophosphate kinase | 97.47 | |
| 1ega_A | 301 | Protein (GTP-binding protein ERA); GTPase, RNA-bin | 97.45 | |
| 2ohf_A | 396 | Protein OLA1, GTP-binding protein 9; ATPase, GTPas | 97.43 | |
| 2gj8_A | 172 | MNME, tRNA modification GTPase TRME; G-domain dime | 97.43 | |
| 4i1u_A | 210 | Dephospho-COA kinase; structural genomics, niaid, | 97.42 | |
| 3kb2_A | 173 | SPBC2 prophage-derived uncharacterized protein YOR | 97.41 | |
| 2p5t_B | 253 | PEZT; postsegregational killing system, phosphoryl | 97.4 | |
| 2dy1_A | 665 | Elongation factor G; translocation, GTP complex, s | 97.4 | |
| 1np6_A | 174 | Molybdopterin-guanine dinucleotide biosynthesis pr | 97.4 | |
| 1m2o_B | 190 | GTP-binding protein SAR1, GTP binding protein; zin | 97.39 | |
| 1lv7_A | 257 | FTSH; alpha/beta domain, four helix bundle, hydrol | 97.38 | |
| 3auy_A | 371 | DNA double-strand break repair RAD50 ATPase; DNA r | 97.34 | |
| 1qhx_A | 178 | CPT, protein (chloramphenicol phosphotransferase); | 97.31 | |
| 2wji_A | 165 | Ferrous iron transport protein B homolog; membrane | 97.28 | |
| 2rhm_A | 193 | Putative kinase; P-loop containing nucleoside trip | 97.25 | |
| 1kht_A | 192 | Adenylate kinase; phosphotransferase, signaling pr | 97.24 | |
| 3iij_A | 180 | Coilin-interacting nuclear ATPase protein; alpha a | 97.23 | |
| 2ze6_A | 253 | Isopentenyl transferase; crown GALL tumor, cytokin | 97.23 | |
| 1vht_A | 218 | Dephospho-COA kinase; structural genomics, transfe | 97.22 | |
| 4ag6_A | 392 | VIRB4 ATPase, type IV secretory pathway VIRB4 comp | 97.21 | |
| 2zr9_A | 349 | Protein RECA, recombinase A; recombination, RECA m | 97.21 | |
| 3kl4_A | 433 | SRP54, signal recognition 54 kDa protein; signal r | 97.21 | |
| 1mky_A | 439 | Probable GTP-binding protein ENGA; GTPase, DER, KH | 97.2 | |
| 2jaq_A | 205 | Deoxyguanosine kinase; transferase, deoxyribonucle | 97.2 | |
| 4fcw_A | 311 | Chaperone protein CLPB; AAA domain; HET: ADP; 2.35 | 97.19 | |
| 1via_A | 175 | Shikimate kinase; structural genomics, transferase | 97.18 | |
| 2wjg_A | 188 | FEOB, ferrous iron transport protein B homolog; me | 97.14 | |
| 1gtv_A | 214 | TMK, thymidylate kinase; transferase, transferase | 97.13 | |
| 2ce7_A | 476 | Cell division protein FTSH; metalloprotease; HET: | 97.12 | |
| 1uf9_A | 203 | TT1252 protein; P-loop, nucleotide binding domain, | 97.11 | |
| 1ypw_A | 806 | Transitional endoplasmic reticulum ATPase; AAA, P9 | 97.11 | |
| 2zej_A | 184 | Dardarin, leucine-rich repeat kinase 2; parkinson' | 97.11 | |
| 2plr_A | 213 | DTMP kinase, probable thymidylate kinase; TMP-bind | 97.1 | |
| 2c95_A | 196 | Adenylate kinase 1; transferase, AP4A, nucleotide | 97.1 | |
| 2v54_A | 204 | DTMP kinase, thymidylate kinase; nucleotide biosyn | 97.09 | |
| 3d3q_A | 340 | TRNA delta(2)-isopentenylpyrophosphate transferase | 97.09 | |
| 2bwj_A | 199 | Adenylate kinase 5; phosphoryl transfer reaction, | 97.08 | |
| 1xjc_A | 169 | MOBB protein homolog; structural genomics, midwest | 97.08 | |
| 1ly1_A | 181 | Polynucleotide kinase; PNK, phosphatase, transfera | 97.08 | |
| 1tev_A | 196 | UMP-CMP kinase; ploop, NMP binding region, LID reg | 97.07 | |
| 2wwf_A | 212 | Thymidilate kinase, putative; transferase, malaria | 97.05 | |
| 3ake_A | 208 | Cytidylate kinase; CMP kinase, CMP complex, open c | 97.04 | |
| 3cf0_A | 301 | Transitional endoplasmic reticulum ATPase; AAA, P9 | 97.04 | |
| 1gvn_B | 287 | Zeta; postsegregational killing system, plasmid; 1 | 97.02 | |
| 1ex7_A | 186 | Guanylate kinase; substrate-induced FIT, domain mo | 97.02 | |
| 1nn5_A | 215 | Similar to deoxythymidylate kinase (thymidylate K; | 97.01 | |
| 2vli_A | 183 | Antibiotic resistance protein; transferase, tunica | 96.99 | |
| 2qtf_A | 364 | Protein HFLX, GTP-binding protein; beta-alpha-barr | 96.97 | |
| 1nks_A | 194 | Adenylate kinase; thermophilic, transferase; HET: | 96.95 | |
| 2z0h_A | 197 | DTMP kinase, thymidylate kinase; ATP-binding, nucl | 96.92 | |
| 3lxx_A | 239 | GTPase IMAP family member 4; structural genomics c | 96.89 | |
| 1aky_A | 220 | Adenylate kinase; ATP:AMP phosphotransferase, myok | 96.89 | |
| 2cdn_A | 201 | Adenylate kinase; phosphoryl transfer, associative | 96.85 | |
| 1jal_A | 363 | YCHF protein; nucleotide-binding fold, structural | 96.8 | |
| 1ukz_A | 203 | Uridylate kinase; transferase; HET: ADP AMP; 1.90A | 96.8 | |
| 1zuh_A | 168 | Shikimate kinase; alpha-beta protein, transferase; | 96.8 | |
| 1qf9_A | 194 | UMP/CMP kinase, protein (uridylmonophosphate/cytid | 96.8 | |
| 2pbr_A | 195 | DTMP kinase, thymidylate kinase; transferase, nucl | 96.79 | |
| 1zd8_A | 227 | GTP:AMP phosphotransferase mitochondrial; ATP:AMP | 96.78 | |
| 3k53_A | 271 | Ferrous iron transport protein B; GTPase fold, hel | 96.78 | |
| 1e6c_A | 173 | Shikimate kinase; phosphoryl transfer, ADP, shikim | 96.77 | |
| 3fb4_A | 216 | Adenylate kinase; psychrophIle, phosphotransferase | 96.76 | |
| 2iyv_A | 184 | Shikimate kinase, SK; transferase, aromatic amino | 96.74 | |
| 2q6t_A | 444 | DNAB replication FORK helicase; hydrolase; 2.90A { | 96.73 | |
| 1zak_A | 222 | Adenylate kinase; ATP:AMP-phosphotransferase, tran | 96.73 | |
| 2pt5_A | 168 | Shikimate kinase, SK; aromatic amino acid biosynth | 96.71 | |
| 3exa_A | 322 | TRNA delta(2)-isopentenylpyrophosphate transferase | 96.71 | |
| 3dl0_A | 216 | Adenylate kinase; phosphotransferase, zinc coordin | 96.67 | |
| 3tlx_A | 243 | Adenylate kinase 2; structural genomics, structura | 96.65 | |
| 3crm_A | 323 | TRNA delta(2)-isopentenylpyrophosphate transferase | 96.65 | |
| 2ged_A | 193 | SR-beta, signal recognition particle receptor beta | 96.63 | |
| 3a4m_A | 260 | L-seryl-tRNA(SEC) kinase; P-loop motif, walker A m | 96.63 | |
| 3umf_A | 217 | Adenylate kinase; rossmann fold, transferase; 2.05 | 96.63 | |
| 3llm_A | 235 | ATP-dependent RNA helicase A; alpha-beta-alpha, st | 96.63 | |
| 2w58_A | 202 | DNAI, primosome component (helicase loader); ATP-b | 96.62 | |
| 1z2a_A | 168 | RAS-related protein RAB-23; RAB GTPase, vesicular | 96.57 | |
| 3foz_A | 316 | TRNA delta(2)-isopentenylpyrophosphate transferas; | 96.56 | |
| 1v5w_A | 343 | DMC1, meiotic recombination protein DMC1/LIM15 hom | 96.56 | |
| 3a8t_A | 339 | Adenylate isopentenyltransferase; rossmann fold pr | 96.55 | |
| 3bos_A | 242 | Putative DNA replication factor; P-loop containing | 96.54 | |
| 2dyk_A | 161 | GTP-binding protein; GTPase, ribosome-binding prot | 96.53 | |
| 2xb4_A | 223 | Adenylate kinase; ATP-binding, nucleotide-binding, | 96.53 | |
| 1kao_A | 167 | RAP2A; GTP-binding protein, small G protein, GDP, | 96.53 | |
| 2ce2_X | 166 | GTPase HRAS; signaling protein, guanine nucleotide | 96.51 | |
| 1u8z_A | 168 | RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH | 96.5 | |
| 1fnn_A | 389 | CDC6P, cell division control protein 6; ORC1, AAA | 96.5 | |
| 1njg_A | 250 | DNA polymerase III subunit gamma; rossman-like fol | 96.49 | |
| 1z0j_A | 170 | RAB-22, RAS-related protein RAB-22A; RAB GTPase, R | 96.48 | |
| 4edh_A | 213 | DTMP kinase, thymidylate kinase; structural genomi | 96.48 | |
| 2qby_A | 386 | CDC6 homolog 1, cell division control protein 6 ho | 96.48 | |
| 3eph_A | 409 | TRNA isopentenyltransferase; transferase, alternat | 96.47 | |
| 1z08_A | 170 | RAS-related protein RAB-21; RAB GTPase, vesicular | 96.46 | |
| 1ek0_A | 170 | Protein (GTP-binding protein YPT51); vesicular tra | 96.45 | |
| 1ky3_A | 182 | GTP-binding protein YPT7P; vesicular traffic, GTP | 96.45 | |
| 3be4_A | 217 | Adenylate kinase; malaria, cryptosporidium parvum | 96.44 | |
| 1c1y_A | 167 | RAS-related protein RAP-1A; GTP-binding proteins, | 96.44 | |
| 1wms_A | 177 | RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, p | 96.43 | |
| 3b1v_A | 272 | Ferrous iron uptake transporter protein B; G prote | 96.43 | |
| 1sxj_D | 353 | Activator 1 41 kDa subunit; clamp loader, processi | 96.43 | |
| 1g16_A | 170 | RAS-related protein SEC4; G protein RAB, signaling | 96.43 | |
| 2erx_A | 172 | GTP-binding protein DI-RAS2; GTP hydrolysis, trans | 96.42 | |
| 3v9p_A | 227 | DTMP kinase, thymidylate kinase; ssgcid, STRU geno | 96.41 | |
| 2lkc_A | 178 | Translation initiation factor IF-2; NMR {Geobacill | 96.41 | |
| 3b9p_A | 297 | CG5977-PA, isoform A; AAA ATPase, ATP-binding, nuc | 96.4 | |
| 2nzj_A | 175 | GTP-binding protein REM 1; GDP/GTP binding, GTP hy | 96.4 | |
| 2fn4_A | 181 | P23, RAS-related protein R-RAS; GDP/GTP binding, G | 96.38 | |
| 2h92_A | 219 | Cytidylate kinase; rossmann fold, transferase; HET | 96.36 | |
| 1ak2_A | 233 | Adenylate kinase isoenzyme-2; nucleoside monophosp | 96.35 | |
| 1r2q_A | 170 | RAS-related protein RAB-5A; GTPase, GNP, atomic re | 96.35 | |
| 2z43_A | 324 | DNA repair and recombination protein RADA; archaea | 96.35 | |
| 4dsu_A | 189 | GTPase KRAS, isoform 2B; small G-protein, signalin | 96.35 | |
| 2oil_A | 193 | CATX-8, RAS-related protein RAB-25; G-protein, GDP | 96.34 | |
| 1sky_E | 473 | F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alp | 96.34 | |
| 2wsm_A | 221 | Hydrogenase expression/formation protein (HYPB); m | 96.33 | |
| 1jbk_A | 195 | CLPB protein; beta barrel, chaperone; 1.80A {Esche | 96.33 | |
| 3clv_A | 208 | RAB5 protein, putative; malaria, GTPase, structura | 96.33 | |
| 1e4v_A | 214 | Adenylate kinase; transferase(phosphotransferase); | 96.33 | |
| 3q85_A | 169 | GTP-binding protein REM 2; G-domain, CAV2 beta, si | 96.33 | |
| 3bc1_A | 195 | RAS-related protein RAB-27A; RAB27, GTPase, RAB, s | 96.32 | |
| 3lv8_A | 236 | DTMP kinase, thymidylate kinase; structural genomi | 96.31 | |
| 1ko7_A | 314 | HPR kinase/phosphatase; protein kinase, phosphotra | 96.29 | |
| 3q72_A | 166 | GTP-binding protein RAD; G-domain, CAV2 beta, sign | 96.29 | |
| 1r8s_A | 164 | ADP-ribosylation factor 1; protein transport/excha | 96.28 | |
| 1svi_A | 195 | GTP-binding protein YSXC; ENGB, GTPase, GDP, hydro | 96.28 | |
| 3h4m_A | 285 | Proteasome-activating nucleotidase; ATPase, PAN, A | 96.26 | |
| 3t1o_A | 198 | Gliding protein MGLA; G domain containing protein, | 96.26 | |
| 3lxw_A | 247 | GTPase IMAP family member 1; immunity, structural | 96.26 | |
| 2a9k_A | 187 | RAS-related protein RAL-A; bacterial ADP-ribosyltr | 96.25 | |
| 1fzq_A | 181 | ADP-ribosylation factor-like protein 3; protein-GD | 96.25 | |
| 3con_A | 190 | GTPase NRAS; structural genomics consortium, SGC, | 96.25 | |
| 3pqc_A | 195 | Probable GTP-binding protein ENGB; rossmann fold, | 96.25 | |
| 4tmk_A | 213 | Protein (thymidylate kinase); ATP:DTMP phosphotran | 96.25 | |
| 3tw8_B | 181 | RAS-related protein RAB-35; longin domain, RAB GTP | 96.24 | |
| 1z0f_A | 179 | RAB14, member RAS oncogene family; RAB GTPase, ves | 96.24 | |
| 2qmh_A | 205 | HPR kinase/phosphorylase; V267F mutation, ATP-bind | 96.24 | |
| 2g6b_A | 180 | RAS-related protein RAB-26; G-protein, GTP analogu | 96.24 | |
| 1ltq_A | 301 | Polynucleotide kinase; phosphatase, alpha/beta, P- | 96.23 | |
| 2y8e_A | 179 | RAB-protein 6, GH09086P, RAB6; hydrolase, nucleoti | 96.23 | |
| 2dby_A | 368 | GTP-binding protein; GDP, structural genomics, NPP | 96.23 | |
| 1upt_A | 171 | ARL1, ADP-ribosylation factor-like protein 1; hydr | 96.22 | |
| 1ypw_A | 806 | Transitional endoplasmic reticulum ATPase; AAA, P9 | 96.22 | |
| 3ihw_A | 184 | Centg3; RAS, centaurin, GTPase, structural genomic | 96.22 | |
| 2hxs_A | 178 | RAB-26, RAS-related protein RAB-28; GTPase, signal | 96.2 | |
| 2e87_A | 357 | Hypothetical protein PH1320; GTP-binding, GTPase, | 96.2 | |
| 2efe_B | 181 | Small GTP-binding protein-like; GEF, GTPase, VPS9, | 96.19 | |
| 1nrj_B | 218 | SR-beta, signal recognition particle receptor beta | 96.18 | |
| 2cxx_A | 190 | Probable GTP-binding protein ENGB; structural geno | 96.18 | |
| 3dm5_A | 443 | SRP54, signal recognition 54 kDa protein; protein- | 96.18 | |
| 1wf3_A | 301 | GTP-binding protein; GTPase, riken structural geno | 96.17 | |
| 3zvl_A | 416 | Bifunctional polynucleotide phosphatase/kinase; hy | 96.17 | |
| 3tmk_A | 216 | Thymidylate kinase; phosphotransferase; HET: T5A; | 96.16 | |
| 2bov_A | 206 | RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, | 96.16 | |
| 1vg8_A | 207 | RAS-related protein RAB-7; GTP-binding protein, pr | 96.15 | |
| 2bme_A | 186 | RAB4A, RAS-related protein RAB4A; GTP-binding prot | 96.15 | |
| 3sr0_A | 206 | Adenylate kinase; phosphoryl transfer analogue, AL | 96.15 | |
| 2gf9_A | 189 | RAS-related protein RAB-3D; G-protein, structural | 96.14 | |
| 3iev_A | 308 | GTP-binding protein ERA; ERA, GTPase, KH domain, a | 96.14 | |
| 3ld9_A | 223 | DTMP kinase, thymidylate kinase; ssgcid, NIH, niai | 96.14 | |
| 3kkq_A | 183 | RAS-related protein M-RAS; GTP-binding, GTPase, si | 96.13 | |
| 3tkl_A | 196 | RAS-related protein RAB-1A; vesicle trafficking, p | 96.13 | |
| 1m7b_A | 184 | RND3/RHOE small GTP-binding protein; small GTPase, | 96.11 | |
| 2gf0_A | 199 | GTP-binding protein DI-RAS1; GDP/GTP binding, GTP | 96.1 | |
| 2ocp_A | 241 | DGK, deoxyguanosine kinase; protein-nucleotide com | 96.1 | |
| 1mh1_A | 186 | RAC1; GTP-binding, GTPase, small G-protein, RHO fa | 96.09 | |
| 2fg5_A | 192 | RAB-22B, RAS-related protein RAB-31; G-protein, GT | 96.09 | |
| 3iby_A | 256 | Ferrous iron transport protein B; G protein, G dom | 96.08 | |
| 1l8q_A | 324 | Chromosomal replication initiator protein DNAA; AA | 96.06 | |
| 2r62_A | 268 | Cell division protease FTSH homolog; ATPase domain | 96.05 | |
| 1z06_A | 189 | RAS-related protein RAB-33B; RAB GTPase, RAB33B GT | 96.03 | |
| 2cjw_A | 192 | GTP-binding protein GEM; nucleotide-binding, small | 96.02 | |
| 3t5g_A | 181 | GTP-binding protein RHEB; immunoglobulin-like beta | 96.02 | |
| 2p65_A | 187 | Hypothetical protein PF08_0063; CLPB, malaria, str | 96.02 | |
| 2a5j_A | 191 | RAS-related protein RAB-2B; GTPase, signal transdu | 96.02 | |
| 3oes_A | 201 | GTPase rhebl1; small GTPase, structural genomics, | 96.01 | |
| 3dz8_A | 191 | RAS-related protein RAB-3B; GDP, GTPase, structura | 96.01 | |
| 2qz4_A | 262 | Paraplegin; AAA+, SPG7, protease, ADP, structural | 95.99 | |
| 2xtp_A | 260 | GTPase IMAP family member 2; immune system, G prot | 95.99 | |
| 3bwd_D | 182 | RAC-like GTP-binding protein ARAC6; G domain, cyto | 95.98 | |
| 1zd9_A | 188 | ADP-ribosylation factor-like 10B; transport protei | 95.98 | |
| 3reg_A | 194 | RHO-like small GTPase; cytoskeleton, nucleotide-bi | 95.97 | |
| 2ew1_A | 201 | RAS-related protein RAB-30; G-protein, GTP analogu | 95.97 | |
| 2atv_A | 196 | RERG, RAS-like estrogen-regulated growth inhibitor | 95.97 | |
| 3a1s_A | 258 | Iron(II) transport protein B; FEOB, iron transport | 95.96 | |
| 1x3s_A | 195 | RAS-related protein RAB-18; GTPase, GNP, structura | 95.96 | |
| 2p5s_A | 199 | RAS and EF-hand domain containing; G-protein, RAB, | 95.95 | |
| 2fv8_A | 207 | H6, RHO-related GTP-binding protein RHOB; GDP/GTP | 95.95 | |
| 2v3c_C | 432 | SRP54, signal recognition 54 kDa protein; nucleoti | 95.94 | |
| 2bcg_Y | 206 | Protein YP2, GTP-binding protein YPT1; RABGTPase, | 95.93 | |
| 3cph_A | 213 | RAS-related protein SEC4; RAB GTPase, prenylation, | 95.92 | |
| 1zbd_A | 203 | Rabphilin-3A; G protein, effector, RABCDR, synapti | 95.91 | |
| 1ksh_A | 186 | ARF-like protein 2; small GTPase, small GTP-bindin | 95.9 | |
| 1moz_A | 183 | ARL1, ADP-ribosylation factor-like protein 1; GTP- | 95.88 | |
| 2iwr_A | 178 | Centaurin gamma 1; ANK repeat, zinc-finger, GTP-bi | 95.87 | |
| 1u94_A | 356 | RECA protein, recombinase A; homologous recombinat | 95.86 | |
| 3c5c_A | 187 | RAS-like protein 12; GDP, GTPase, structural genom | 95.86 | |
| 3i8s_A | 274 | Ferrous iron transport protein B; GTPase, GPCR, ir | 95.85 | |
| 3t5d_A | 274 | Septin-7; GTP-binding protein, cytoskeleton, signa | 95.84 | |
| 3cbq_A | 195 | GTP-binding protein REM 2; FLJ38964A, structural g | 95.84 | |
| 1gwn_A | 205 | RHO-related GTP-binding protein RHOE; GTPase, inac | 95.83 | |
| 2z4s_A | 440 | Chromosomal replication initiator protein DNAA; AA | 95.83 | |
| 1zj6_A | 187 | ADP-ribosylation factor-like protein 5; ARL, GTP-b | 95.81 | |
| 2i1q_A | 322 | DNA repair and recombination protein RADA; ATPase, | 95.78 | |
| 2fh5_B | 214 | SR-beta, signal recognition particle receptor beta | 95.78 | |
| 1p5z_B | 263 | DCK, deoxycytidine kinase; nucleoside kinase, P-lo | 95.77 | |
| 2o52_A | 200 | RAS-related protein RAB-4B; G-protein, GDP, struct | 95.76 | |
| 2zts_A | 251 | Putative uncharacterized protein PH0186; KAIC like | 95.76 | |
| 1jwy_B | 315 | Dynamin A GTPase domain; dynamin, GTPase, GDP, myo | 95.75 | |
| 2h17_A | 181 | ADP-ribosylation factor-like protein 5A; GDP, GTPa | 95.74 | |
| 4hlc_A | 205 | DTMP kinase, thymidylate kinase; TMK, MRSA, pipiri | 95.74 | |
| 2hf9_A | 226 | Probable hydrogenase nickel incorporation protein | 95.72 | |
| 2gco_A | 201 | H9, RHO-related GTP-binding protein RHOC; GTPase,s | 95.71 | |
| 2il1_A | 192 | RAB12; G-protein, GDP, GTPase, predicted, structur | 95.7 | |
| 4dhe_A | 223 | Probable GTP-binding protein ENGB; melioidosis, RA | 95.69 | |
| 2qu8_A | 228 | Putative nucleolar GTP-binding protein 1; GTPase, | 95.68 | |
| 2f7s_A | 217 | C25KG, RAS-related protein RAB-27B; G-protein, str | 95.67 | |
| 2fu5_C | 183 | RAS-related protein RAB-8A; MSS4:RAB8 protein comp | 95.67 | |
| 2atx_A | 194 | Small GTP binding protein TC10; GTPase, P-loop, al | 95.66 | |
| 4bas_A | 199 | ADP-ribosylation factor, putative (small GTPase, p | 95.64 | |
| 2h57_A | 190 | ADP-ribosylation factor-like protein 6; GTP, GTPas | 95.63 | |
| 2q3h_A | 201 | RAS homolog gene family, member U; GTPase, structu | 95.62 | |
| 3pvs_A | 447 | Replication-associated recombination protein A; ma | 95.6 | |
| 3p32_A | 355 | Probable GTPase RV1496/MT1543; structural genomics | 95.58 | |
| 2j1l_A | 214 | RHO-related GTP-binding protein RHOD; GTPase, memb | 95.57 | |
| 2hup_A | 201 | RAS-related protein RAB-43; G-protein, GDP, struct | 95.53 | |
| 3llu_A | 196 | RAS-related GTP-binding protein C; structural geno | 95.52 | |
| 3gmt_A | 230 | Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucle | 95.5 | |
| 3cpj_B | 223 | GTP-binding protein YPT31/YPT8; RAB GTPase, prenyl | 95.5 | |
| 3tqf_A | 181 | HPR(Ser) kinase; transferase, hydrolase; 2.80A {Co | 95.49 | |
| 3def_A | 262 | T7I23.11 protein; chloroplast, TOC33, GTPase, hydr | 95.48 | |
| 2aka_B | 299 | Dynamin-1; fusion protein, GTPase domain, myosin, | 95.46 | |
| 4gzl_A | 204 | RAS-related C3 botulinum toxin substrate 1; rossma | 95.44 | |
| 2orw_A | 184 | Thymidine kinase; TMTK, TP4A, transferase; HET: 4T | 95.43 | |
| 3t15_A | 293 | Ribulose bisphosphate carboxylase/oxygenase activ | 95.41 | |
| 3syl_A | 309 | Protein CBBX; photosynthesis, rubisco activase, AA | 95.4 | |
| 3q3j_B | 214 | RHO-related GTP-binding protein RHO6; RAS-binding | 95.38 | |
| 1h65_A | 270 | Chloroplast outer envelope protein OEP34; GTPase, | 95.36 | |
| 2chg_A | 226 | Replication factor C small subunit; DNA-binding pr | 95.35 | |
| 2g3y_A | 211 | GTP-binding protein GEM; small GTPase, GDP, inacti | 95.35 | |
| 2yc2_C | 208 | IFT27, small RAB-related GTPase; transport protein | 95.35 | |
| 3cnl_A | 262 | YLQF, putative uncharacterized protein; circular p | 95.34 | |
| 2v1u_A | 387 | Cell division control protein 6 homolog; DNA repli | 95.34 | |
| 3n70_A | 145 | Transport activator; sigma-54, ntpase, PSI, MCSG, | 95.33 | |
| 2j0v_A | 212 | RAC-like GTP-binding protein ARAC7; nucleotide-bin | 95.32 | |
| 2b6h_A | 192 | ADP-ribosylation factor 5; membrane trafficking, G | 95.27 | |
| 1tue_A | 212 | Replication protein E1; helicase, replication, E1E | 95.2 | |
| 4djt_A | 218 | GTP-binding nuclear protein GSP1; structural genom | 95.18 | |
| 1xwi_A | 322 | SKD1 protein; VPS4B, AAA ATPase, protein transport | 95.12 | |
| 2xau_A | 773 | PRE-mRNA-splicing factor ATP-dependent RNA helica; | 95.12 | |
| 2j37_W | 504 | Signal recognition particle 54 kDa protein (SRP54) | 95.11 | |
| 4dcu_A | 456 | GTP-binding protein ENGA; GTPase, GDP, protein bin | 95.09 | |
| 1ofh_A | 310 | ATP-dependent HSL protease ATP-binding subunit HSL | 95.01 | |
| 1yrb_A | 262 | ATP(GTP)binding protein; GTPase, P-loop, rossman f | 95.0 | |
| 1m8p_A | 573 | Sulfate adenylyltransferase; rossmann fold, phosph | 94.98 | |
| 2r8r_A | 228 | Sensor protein; KDPD, PFAM02702, MCSG, structural | 94.97 | |
| 2x77_A | 189 | ADP-ribosylation factor; GTP-binding protein, smal | 94.95 | |
| 1g8f_A | 511 | Sulfate adenylyltransferase; alpha-beta protein, b | 94.94 | |
| 3hws_A | 363 | ATP-dependent CLP protease ATP-binding subunit CL; | 94.94 | |
| 2r44_A | 331 | Uncharacterized protein; putative ATPase, structur | 94.89 | |
| 1x6v_B | 630 | Bifunctional 3'-phosphoadenosine 5'- phosphosulfat | 94.89 | |
| 3uk6_A | 368 | RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding | 94.88 | |
| 1d2n_A | 272 | N-ethylmaleimide-sensitive fusion protein; hexamer | 94.82 | |
| 1xp8_A | 366 | RECA protein, recombinase A; recombination, radior | 94.8 | |
| 1puj_A | 282 | YLQF, conserved hypothetical protein YLQF; structu | 94.8 | |
| 3gj0_A | 221 | GTP-binding nuclear protein RAN; G protein, GDP, a | 94.79 | |
| 2qby_B | 384 | CDC6 homolog 3, cell division control protein 6 ho | 94.79 | |
| 3d8b_A | 357 | Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, s | 94.77 | |
| 2qgz_A | 308 | Helicase loader, putative primosome component; str | 94.72 | |
| 3eie_A | 322 | Vacuolar protein sorting-associated protein 4; AAA | 94.7 | |
| 2xxa_A | 433 | Signal recognition particle protein; protein trans | 94.7 | |
| 3th5_A | 204 | RAS-related C3 botulinum toxin substrate 1; rossma | 93.66 | |
| 2vhj_A | 331 | Ntpase P4, P4; non- hydrolysable ATP analogue, hyd | 94.64 | |
| 3l0o_A | 427 | Transcription termination factor RHO; helicase, RH | 94.63 | |
| 1wxq_A | 397 | GTP-binding protein; structural genomics, riken st | 94.61 | |
| 2qen_A | 350 | Walker-type ATPase; unknown function; HET: ADP; 2. | 94.58 | |
| 2axn_A | 520 | 6-phosphofructo-2-kinase/fructose-2,6- biphosphata | 94.57 | |
| 4b4t_K | 428 | 26S protease regulatory subunit 6B homolog; hydrol | 94.57 | |
| 1jr3_A | 373 | DNA polymerase III subunit gamma; processivity, pr | 94.56 | |
| 3geh_A | 462 | MNME, tRNA modification GTPase MNME; G protein, U3 | 94.53 | |
| 4b4t_L | 437 | 26S protease subunit RPT4; hydrolase, AAA-atpases, | 94.52 | |
| 4b4t_M | 434 | 26S protease regulatory subunit 6A; hydrolase, AAA | 94.49 |
| >3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C | Back alignment and structure |
|---|
Probab=100.00 E-value=6.7e-44 Score=335.99 Aligned_cols=204 Identities=15% Similarity=0.121 Sum_probs=173.8
Q ss_pred ccEEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCCC-----
Q 021362 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPP----- 149 (313)
Q Consensus 75 m~~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~~----- 149 (313)
++||+++||+|.|++..+...+|+||||+|++||++||+||||||||||+|+|+|+++ |++|+|.++|++..
T Consensus 22 ~~mi~v~~ls~~y~~~~~~~~aL~~vsl~i~~Gei~~IiGpnGaGKSTLlr~i~GL~~---p~~G~I~i~G~~i~~~~~~ 98 (366)
T 3tui_C 22 KHMIKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLER---PTEGSVLVDGQELTTLSES 98 (366)
T ss_dssp -CCEEEEEEEEEEECSSSEEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSC---CSEEEEEETTEECSSCCHH
T ss_pred CceEEEEeEEEEeCCCCCCeEEEEeeEEEEcCCCEEEEEcCCCchHHHHHHHHhcCCC---CCceEEEECCEECCcCCHH
Confidence 3589999999999754333459999999999999999999999999999999999999 99999999997642
Q ss_pred ------CeEEEEecCCCCCCcccCCcccChHHHHHhcCCCCCccHHHHHHHHHHhhc--CCCccCCCCCCcCCCcchhhh
Q 021362 150 ------DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDI 221 (313)
Q Consensus 150 ------~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~~~~~~~~~~~~l~~l~~--~~~~~~~~LSgG~kqRv~ia~ 221 (313)
+.++|+||++..++ .+||+||+.++....+.+.....+++.++|+.++. ..++++.+|||||||||+||+
T Consensus 99 ~~~~~r~~Ig~v~Q~~~l~~--~~TV~env~~~~~~~~~~~~~~~~~v~~lL~~vgL~~~~~~~~~~LSGGqkQRVaIAr 176 (366)
T 3tui_C 99 ELTKARRQIGMIFQHFNLLS--SRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKHDSYPSNLSGGQKQRVAIAR 176 (366)
T ss_dssp HHHHHHTTEEEECSSCCCCT--TSCHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGGGTTCCTTTSCHHHHHHHHHHH
T ss_pred HHHHHhCcEEEEeCCCccCC--CCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHH
Confidence 35999999965443 48999999998877776655666788999999983 467788899999999999999
Q ss_pred hhccCceEEEEcCCccccCh----hhHHHHHhhccc----eEEEEcChHHHHH---HHh----hcccccCCchHHHH
Q 021362 222 LVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFDE----KWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAK 283 (313)
Q Consensus 222 al~~~ar~Li~d~~~lllDE----~~~~~l~~l~~~----~i~vtHd~~~~~~---rv~----griv~~G~~~ev~~ 283 (313)
|++.++++|++|+|+..||+ .+++.|+++.++ .++||||++++.. |++ |++++.|++.++..
T Consensus 177 AL~~~P~lLLlDEPTs~LD~~~~~~i~~lL~~l~~~~g~Tii~vTHdl~~~~~~aDrv~vl~~G~iv~~g~~~ev~~ 253 (366)
T 3tui_C 177 ALASNPKVLLCDQATSALDPATTRSILELLKDINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQDTVSEVFS 253 (366)
T ss_dssp HTTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHSCCEEEEEESCHHHHHHHCSEEEEEETTEEEECCBHHHHHS
T ss_pred HHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 99999999999999999999 566666666432 4799999999987 665 99999999988753
|
| >3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.3e-44 Score=336.99 Aligned_cols=198 Identities=14% Similarity=0.170 Sum_probs=169.9
Q ss_pred EEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCC--------
Q 021362 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP-------- 148 (313)
Q Consensus 77 ~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~-------- 148 (313)
+|+++||+|.|++.. +|+|+||+|++||+++|+||||||||||+|+|+|+++ |++|+|.++|++.
T Consensus 4 ~l~i~~ls~~y~~~~----~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~---p~~G~I~i~G~~i~~~~~~~~ 76 (359)
T 3fvq_A 4 ALHIGHLSKSFQNTP----VLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQ---PDSGEISLSGKTIFSKNTNLP 76 (359)
T ss_dssp CEEEEEEEEEETTEE----EEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSC---CSEEEEEETTEEEESSSCBCC
T ss_pred EEEEEeEEEEECCEE----EEEeeEEEEcCCCEEEEECCCCchHHHHHHHHhcCCC---CCCcEEEECCEECcccccccc
Confidence 699999999998877 9999999999999999999999999999999999999 9999999999653
Q ss_pred --CCeEEEEecCCCCCCcccCCcccChHHHHHhcCCCCCccHHHHHHHHHHhh--cCCCccCCCCCCcCCCcchhhhhhc
Q 021362 149 --PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLR--NQGSVYAPSFDHGVGDPVEDDILVG 224 (313)
Q Consensus 149 --~~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~~~~~~~~~~~~l~~l~--~~~~~~~~~LSgG~kqRv~ia~al~ 224 (313)
.+.++|+||+...++ .+||+||+.+++..++.+.....+++.++++.++ ...++++.+|||||||||+||+|++
T Consensus 77 ~~~r~ig~vfQ~~~l~p--~ltV~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~r~~~~LSGGq~QRValArAL~ 154 (359)
T 3fvq_A 77 VRERRLGYLVQEGVLFP--HLTVYRNIAYGLGNGKGRTAQERQRIEAMLELTGISELAGRYPHELSGGQQQRAALARALA 154 (359)
T ss_dssp GGGSCCEEECTTCCCCT--TSCHHHHHHTTSTTSSCCSHHHHHHHHHHHHHHTCGGGTTSCGGGSCHHHHHHHHHHHHHT
T ss_pred hhhCCEEEEeCCCcCCC--CCCHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHH
Confidence 246999999965433 5999999999876666555556678899999998 3467788899999999999999999
Q ss_pred cCceEEEEcCCccccChh----hHHHHHhhcc----ceEEEEcChHHHHH---HHh----hcccccCCchHHHH
Q 021362 225 LQHKVVIVDGNYLFLDGG----VWKDVSSMFD----EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAK 283 (313)
Q Consensus 225 ~~ar~Li~d~~~lllDE~----~~~~l~~l~~----~~i~vtHd~~~~~~---rv~----griv~~G~~~ev~~ 283 (313)
.++++|++|+|+..||.. +++.|.++.+ ..|+||||++++.. |++ |++++.|+++++..
T Consensus 155 ~~P~lLLLDEPts~LD~~~r~~l~~~l~~~~~~~g~tvi~vTHd~~ea~~~aDri~vl~~G~i~~~g~~~el~~ 228 (359)
T 3fvq_A 155 PDPELILLDEPFSALDEQLRRQIREDMIAALRANGKSAVFVSHDREEALQYADRIAVMKQGRILQTASPHELYR 228 (359)
T ss_dssp TCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHCCEEEEEECCEEEEEeCHHHHHh
Confidence 999999999999999993 4444444432 24799999999987 665 99999999999864
|
| >3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A | Back alignment and structure |
|---|
Probab=100.00 E-value=6.8e-44 Score=337.81 Aligned_cols=200 Identities=15% Similarity=0.152 Sum_probs=173.5
Q ss_pred ccEEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCCC-----
Q 021362 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPP----- 149 (313)
Q Consensus 75 m~~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~~----- 149 (313)
|.+|+++||+|.|++.. +|+|+||+|++||+++|+||||||||||+|+|+|+++ |++|+|.++|++..
T Consensus 1 M~~l~~~~l~~~yg~~~----~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~---p~~G~I~i~G~~~~~~~~~ 73 (381)
T 3rlf_A 1 MASVQLQNVTKAWGEVV----VSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLET---ITSGDLFIGEKRMNDTPPA 73 (381)
T ss_dssp -CCEEEEEEEEEETTEE----EEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSC---CSEEEEEETTEECTTCCGG
T ss_pred CCEEEEEeEEEEECCEE----EEeeeEEEECCCCEEEEEcCCCchHHHHHHHHHcCCC---CCCeEEEECCEECCCCCHH
Confidence 45799999999999877 9999999999999999999999999999999999999 99999999997632
Q ss_pred -CeEEEEecCCCCCCcccCCcccChHHHHHhcCCCCCccHHHHHHHHHHhh--cCCCccCCCCCCcCCCcchhhhhhccC
Q 021362 150 -DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLR--NQGSVYAPSFDHGVGDPVEDDILVGLQ 226 (313)
Q Consensus 150 -~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~~~~~~~~~~~~l~~l~--~~~~~~~~~LSgG~kqRv~ia~al~~~ 226 (313)
+.++||||+...++ .+||+||+.+++..++.++.+..+++.++++.++ ...++++.+|||||||||+||+|++.+
T Consensus 74 ~r~ig~VfQ~~~l~p--~ltV~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~p~~LSGGqrQRVaiArAL~~~ 151 (381)
T 3rlf_A 74 ERGVGMVFQSYALYP--HLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAE 151 (381)
T ss_dssp GSCEEEECTTCCCCT--TSCHHHHHTHHHHHTTCCHHHHHHHHHHHHHHTTCGGGTTCCGGGSCHHHHHHHHHHHHHHHC
T ss_pred HCCEEEEecCCcCCC--CCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCChhHCCHHHHHHHHHHHHHHcC
Confidence 45999999965433 5999999999988777666666778899999988 346778889999999999999999999
Q ss_pred ceEEEEcCCccccCh----hhHHHHHhhccc----eEEEEcChHHHHH---HHh----hcccccCCchHHHH
Q 021362 227 HKVVIVDGNYLFLDG----GVWKDVSSMFDE----KWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAK 283 (313)
Q Consensus 227 ar~Li~d~~~lllDE----~~~~~l~~l~~~----~i~vtHd~~~~~~---rv~----griv~~G~~~ev~~ 283 (313)
+++|++|+|+..||. .+++.|+++.++ .|+||||++++.. |++ |++++.|+++++..
T Consensus 152 P~lLLLDEPts~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~~ea~~~aDri~vl~~G~i~~~g~~~~l~~ 223 (381)
T 3rlf_A 152 PSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYH 223 (381)
T ss_dssp CSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred CCEEEEECCCcCCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhCCEEEEEECCEEEEEeCHHHHHh
Confidence 999999999999998 556666666432 4799999999987 665 99999999999854
|
| >2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-42 Score=326.53 Aligned_cols=200 Identities=15% Similarity=0.157 Sum_probs=170.2
Q ss_pred ccEEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCC------
Q 021362 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP------ 148 (313)
Q Consensus 75 m~~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~------ 148 (313)
|.+|+++||+|.|++.. +|+|+||+|++||+++|+||||||||||+|+|+|+++ |++|+|.++|++.
T Consensus 1 m~~l~~~~l~~~y~~~~----vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~---p~~G~I~i~g~~i~~~~~~ 73 (362)
T 2it1_A 1 MVEIKLENIVKKFGNFT----ALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYK---PTSGKIYFDEKDVTELPPK 73 (362)
T ss_dssp CCCEEEEEEEEESSSSE----EEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSC---CSEEEEEETTEECTTSCGG
T ss_pred CcEEEEEeEEEEECCEE----EEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCC---CCceEEEECCEECCcCCHh
Confidence 44699999999998766 9999999999999999999999999999999999999 9999999999653
Q ss_pred CCeEEEEecCCCCCCcccCCcccChHHHHHhcCCCCCccHHHHHHHHHHhhc--CCCccCCCCCCcCCCcchhhhhhccC
Q 021362 149 PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDILVGLQ 226 (313)
Q Consensus 149 ~~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~~~~~~~~~~~~l~~l~~--~~~~~~~~LSgG~kqRv~ia~al~~~ 226 (313)
.+.++|+||+...++ ++||+||+.+++..++.+.....+++.++++.++. ..++++.+|||||||||+||+|++.+
T Consensus 74 ~r~ig~v~Q~~~l~~--~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~~ 151 (362)
T 2it1_A 74 DRNVGLVFQNWALYP--HMTVYKNIAFPLELRKAPREEIDKKVREVAKMLHIDKLLNRYPWQLSGGQQQRVAIARALVKE 151 (362)
T ss_dssp GTTEEEECTTCCCCT--TSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCTTCTTCCGGGSCHHHHHHHHHHHHHTTC
T ss_pred HCcEEEEecCcccCC--CCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhhCChhhCCHHHHHHHHHHHHHHcC
Confidence 245999999965433 59999999998776655544445678899999984 45677889999999999999999999
Q ss_pred ceEEEEcCCccccCh----hhHHHHHhhcc----ceEEEEcChHHHHH---HHh----hcccccCCchHHHH
Q 021362 227 HKVVIVDGNYLFLDG----GVWKDVSSMFD----EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAK 283 (313)
Q Consensus 227 ar~Li~d~~~lllDE----~~~~~l~~l~~----~~i~vtHd~~~~~~---rv~----griv~~G~~~ev~~ 283 (313)
+++|++|+|+..||. .+++.|+++.+ ..|+||||++++.. |++ |++++.|+++++..
T Consensus 152 P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~g~~~~~~~ 223 (362)
T 2it1_A 152 PEVLLLDEPLSNLDALLRLEVRAELKRLQKELGITTVYVTHDQAEALAMADRIAVIREGEILQVGTPDEVYY 223 (362)
T ss_dssp CSEEEEESGGGGSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred CCEEEEECccccCCHHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 999999999999999 45566666543 24799999999976 655 99999999998854
|
| >1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.1e-42 Score=324.28 Aligned_cols=199 Identities=16% Similarity=0.228 Sum_probs=169.9
Q ss_pred cEEEEccceEEc-cccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCC------
Q 021362 76 PVVEARCMDEVY-DALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP------ 148 (313)
Q Consensus 76 ~~l~~~~l~~~y-~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~------ 148 (313)
++|+++||+|.| ++.. +|+|+||+|++||+++|+||||||||||+|+|+|+++ |++|+|.++|++.
T Consensus 13 ~~l~~~~l~~~y~g~~~----vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~---p~~G~I~i~g~~i~~~~~~ 85 (355)
T 1z47_A 13 MTIEFVGVEKIYPGGAR----SVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLER---PTKGDVWIGGKRVTDLPPQ 85 (355)
T ss_dssp EEEEEEEEEECCTTSTT----CEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSC---CSEEEEEETTEECTTCCGG
T ss_pred ceEEEEEEEEEEcCCCE----EEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhCCCC---CCccEEEECCEECCcCChh
Confidence 479999999999 7666 9999999999999999999999999999999999999 9999999999653
Q ss_pred CCeEEEEecCCCCCCcccCCcccChHHHHHhcCCCCCccHHHHHHHHHHhhc--CCCccCCCCCCcCCCcchhhhhhccC
Q 021362 149 PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDILVGLQ 226 (313)
Q Consensus 149 ~~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~~~~~~~~~~~~l~~l~~--~~~~~~~~LSgG~kqRv~ia~al~~~ 226 (313)
.+.++|+||+...++ .+||+||+.+++..++.+.....+++.++++.++. ..++++.+|||||||||+||+|++.+
T Consensus 86 ~r~ig~v~Q~~~l~~--~ltv~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~r~~~~LSGGq~QRvalArAL~~~ 163 (355)
T 1z47_A 86 KRNVGLVFQNYALFQ--HMTVYDNVSFGLREKRVPKDEMDARVRELLRFMRLESYANRFPHELSGGQQQRVALARALAPR 163 (355)
T ss_dssp GSSEEEECGGGCCCT--TSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTC
T ss_pred hCcEEEEecCcccCC--CCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHHcC
Confidence 246999999965433 59999999998776655544445678899999883 46778889999999999999999999
Q ss_pred ceEEEEcCCccccCh----hhHHHHHhhcc----ceEEEEcChHHHHH---HHh----hcccccCCchHHHH
Q 021362 227 HKVVIVDGNYLFLDG----GVWKDVSSMFD----EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAK 283 (313)
Q Consensus 227 ar~Li~d~~~lllDE----~~~~~l~~l~~----~~i~vtHd~~~~~~---rv~----griv~~G~~~ev~~ 283 (313)
+++|++|+|+..||. .+++.|+++.+ ..|+||||++++.. |++ |+++..|+++++..
T Consensus 164 P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~g~~~~l~~ 235 (355)
T 1z47_A 164 PQVLLFDEPFAAIDTQIRRELRTFVRQVHDEMGVTSVFVTHDQEEALEVADRVLVLHEGNVEQFGTPEEVYE 235 (355)
T ss_dssp CSEEEEESTTCCSSHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred CCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 999999999999999 45556666543 24799999999987 655 99999999998854
|
| >2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-42 Score=327.20 Aligned_cols=200 Identities=15% Similarity=0.157 Sum_probs=168.1
Q ss_pred ccEEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCC------
Q 021362 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP------ 148 (313)
Q Consensus 75 m~~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~------ 148 (313)
|.+|+++||+|.|++.. +|+|+||+|++||+++|+||||||||||+|+|+|+++ |++|+|.++|++.
T Consensus 1 M~~l~~~~l~~~y~~~~----vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~---p~~G~I~i~g~~i~~~~~~ 73 (359)
T 2yyz_A 1 MPSIRVVNLKKYFGKVK----AVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYK---PTSGEIYFDDVLVNDIPPK 73 (359)
T ss_dssp -CCEEEEEEEEEETTEE----EEEEEEEEECTTCEEEEECSTTSSHHHHHHHHHTSSC---CSEEEEEETTEECTTSCGG
T ss_pred CcEEEEEEEEEEECCEE----EEeeeEEEEcCCCEEEEEcCCCchHHHHHHHHHCCCC---CCccEEEECCEECCCCChh
Confidence 44699999999998766 9999999999999999999999999999999999999 9999999999653
Q ss_pred CCeEEEEecCCCCCCcccCCcccChHHHHHhcCCCCCccHHHHHHHHHHhhc--CCCccCCCCCCcCCCcchhhhhhccC
Q 021362 149 PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDILVGLQ 226 (313)
Q Consensus 149 ~~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~~~~~~~~~~~~l~~l~~--~~~~~~~~LSgG~kqRv~ia~al~~~ 226 (313)
.+.++|+||+...++ ++||+||+.++...++.+.....+++.++++.++. ..++++.+|||||||||+||+|++.+
T Consensus 74 ~r~ig~v~Q~~~l~~--~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSgGq~QRvalArAL~~~ 151 (359)
T 2yyz_A 74 YREVGMVFQNYALYP--HMTVFENIAFPLRARRISKDEVEKRVVEIARKLLIDNLLDRKPTQLSGGQQQRVALARALVKQ 151 (359)
T ss_dssp GTTEEEECSSCCCCT--TSCHHHHHHGGGSSSCSHHHHTTHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTC
T ss_pred hCcEEEEecCcccCC--CCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcC
Confidence 245999999965433 59999999987654443333345678899999883 46778889999999999999999999
Q ss_pred ceEEEEcCCccccCh----hhHHHHHhhcc----ceEEEEcChHHHHH---HHh----hcccccCCchHHHH
Q 021362 227 HKVVIVDGNYLFLDG----GVWKDVSSMFD----EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAK 283 (313)
Q Consensus 227 ar~Li~d~~~lllDE----~~~~~l~~l~~----~~i~vtHd~~~~~~---rv~----griv~~G~~~ev~~ 283 (313)
+++|++|+|+..||. .+++.|+++.+ ..++||||++++.. |++ |+++..|+++++..
T Consensus 152 P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~~~~~adri~vl~~G~i~~~g~~~~l~~ 223 (359)
T 2yyz_A 152 PKVLLFDEPLSNLDANLRMIMRAEIKHLQQELGITSVYVTHDQAEAMTMASRIAVFNQGKLVQYGTPDEVYD 223 (359)
T ss_dssp CSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred CCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHh
Confidence 999999999999999 45556666543 24799999999976 655 99999999999854
|
| >1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-42 Score=326.65 Aligned_cols=200 Identities=14% Similarity=0.147 Sum_probs=165.0
Q ss_pred ccEEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCC------
Q 021362 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP------ 148 (313)
Q Consensus 75 m~~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~------ 148 (313)
|.+|+++||+|.|++.. +|+|+||+|++||+++|+||||||||||+|+|+|+++ |++|+|.++|++.
T Consensus 9 M~~l~~~~l~~~y~~~~----vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~---p~~G~I~i~g~~i~~~~~~ 81 (372)
T 1v43_A 9 MVEVKLENLTKRFGNFT----AVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEE---PTEGRIYFGDRDVTYLPPK 81 (372)
T ss_dssp CCCEEEEEEEEEETTEE----EEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSC---CSEEEEEETTEECTTSCGG
T ss_pred eeeEEEEEEEEEECCEE----EEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCC---CCceEEEECCEECCCCChh
Confidence 56799999999998766 9999999999999999999999999999999999999 9999999999653
Q ss_pred CCeEEEEecCCCCCCcccCCcccChHHHHHhcCCCCCccHHHHHHHHHHhhc--CCCccCCCCCCcCCCcchhhhhhccC
Q 021362 149 PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDILVGLQ 226 (313)
Q Consensus 149 ~~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~~~~~~~~~~~~l~~l~~--~~~~~~~~LSgG~kqRv~ia~al~~~ 226 (313)
.+.++|+||+...++ ++||+||+.+++..++.+.....+++.++++.++. ..++++.+|||||||||+||+|++.+
T Consensus 82 ~r~ig~v~Q~~~l~~--~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~~ 159 (372)
T 1v43_A 82 DRNISMVFQSYAVWP--HMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEELLNRYPAQLSGGQRQRVAVARAIVVE 159 (372)
T ss_dssp GGTEEEEEC--------CCCHHHHHHTTCC--CCCHHHHHHHHHHHHHHTTCGGGTTSCTTTCCSSCHHHHHHHHHHTTC
T ss_pred hCcEEEEecCcccCC--CCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcC
Confidence 245999999955433 59999999987554444433345678899999883 46778889999999999999999999
Q ss_pred ceEEEEcCCccccCh----hhHHHHHhhccc----eEEEEcChHHHHH---HHh----hcccccCCchHHHH
Q 021362 227 HKVVIVDGNYLFLDG----GVWKDVSSMFDE----KWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAK 283 (313)
Q Consensus 227 ar~Li~d~~~lllDE----~~~~~l~~l~~~----~i~vtHd~~~~~~---rv~----griv~~G~~~ev~~ 283 (313)
+++|++|+|+..||. .+++.|+++.++ .|+||||++++.. |++ |+++..|+++++..
T Consensus 160 P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~g~~~~l~~ 231 (372)
T 1v43_A 160 PDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQVEAMTMGDRIAVMNRGQLLQIGSPTEVYL 231 (372)
T ss_dssp CSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred CCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHh
Confidence 999999999999999 455566665432 4799999999976 655 99999999998854
|
| >3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.6e-43 Score=318.51 Aligned_cols=202 Identities=17% Similarity=0.126 Sum_probs=170.2
Q ss_pred cEEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCCC------
Q 021362 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPP------ 149 (313)
Q Consensus 76 ~~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~~------ 149 (313)
++|+++||++.|++.. .+|+|+||+|++||+++|+||||||||||+|+|+|+++ |++|+|.++|++..
T Consensus 6 ~~l~i~~ls~~y~~~~---~~L~~isl~i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~~---p~~G~I~~~G~~i~~~~~~~ 79 (275)
T 3gfo_A 6 YILKVEELNYNYSDGT---HALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILK---PSSGRILFDNKPIDYSRKGI 79 (275)
T ss_dssp EEEEEEEEEEECTTSC---EEEEEEEEEEETTSEEEEECCTTSSHHHHHHHHTTSSC---CSEEEEEETTEECCCSHHHH
T ss_pred cEEEEEEEEEEECCCC---eEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCC---CCCeEEEECCEECCcccccH
Confidence 4799999999997531 28999999999999999999999999999999999999 99999999997652
Q ss_pred ----CeEEEEecCCCCCCcccCCcccChHHHHHhcCCCCCccHHHHHHHHHHhhc--CCCccCCCCCCcCCCcchhhhhh
Q 021362 150 ----DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDILV 223 (313)
Q Consensus 150 ----~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~~~~~~~~~~~~l~~l~~--~~~~~~~~LSgG~kqRv~ia~al 223 (313)
+.++|+||++..... .+||+||+.++....+.+.....+++.++++.++. ..++++.+|||||||||+||+|+
T Consensus 80 ~~~~~~ig~v~Q~~~~~~~-~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~iAraL 158 (275)
T 3gfo_A 80 MKLRESIGIVFQDPDNQLF-SASVYQDVSFGAVNMKLPEDEIRKRVDNALKRTGIEHLKDKPTHCLSFGQKKRVAIAGVL 158 (275)
T ss_dssp HHHHHSEEEECSSGGGTCC-SSBHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHH
T ss_pred HHHhCcEEEEEcCcccccc-cCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCCcccCCHHHHHHHHHHHHH
Confidence 359999998632222 37999999998776665555556778899999883 45677889999999999999999
Q ss_pred ccCceEEEEcCCccccCh----hhHHHHHhhc-c---ceEEEEcChHHHHH---HHh----hcccccCCchHHHHH
Q 021362 224 GLQHKVVIVDGNYLFLDG----GVWKDVSSMF-D---EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAKW 284 (313)
Q Consensus 224 ~~~ar~Li~d~~~lllDE----~~~~~l~~l~-~---~~i~vtHd~~~~~~---rv~----griv~~G~~~ev~~~ 284 (313)
+.++++|++|+|+..||+ .+++.|+++. + ..|+||||++++.. |++ |++++.|+++++...
T Consensus 159 ~~~P~lLlLDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHdl~~~~~~~drv~~l~~G~i~~~g~~~~~~~~ 234 (275)
T 3gfo_A 159 VMEPKVLILDEPTAGLDPMGVSEIMKLLVEMQKELGITIIIATHDIDIVPLYCDNVFVMKEGRVILQGNPKEVFAE 234 (275)
T ss_dssp TTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHCCEEEEEESCCSSGGGGCSEEEEEETTEEEEEECHHHHTHH
T ss_pred HcCCCEEEEECccccCCHHHHHHHHHHHHHHHhhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHHHhcC
Confidence 999999999999999999 5666666665 2 24799999999876 655 999999999998643
|
| >1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-42 Score=326.92 Aligned_cols=200 Identities=14% Similarity=0.103 Sum_probs=170.0
Q ss_pred ccEEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCC------
Q 021362 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP------ 148 (313)
Q Consensus 75 m~~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~------ 148 (313)
|.+|+++||+|.|++.. +|+|+||+|++||+++|+||||||||||+|+|+|+++ |++|+|.++|++.
T Consensus 1 M~~l~~~~l~~~y~~~~----vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~---p~~G~I~i~g~~~~~~~~~ 73 (372)
T 1g29_1 1 MAGVRLVDVWKVFGEVT----AVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEE---PSRGQIYIGDKLVADPEKG 73 (372)
T ss_dssp CEEEEEEEEEEEETTEE----EEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSC---CSEEEEEETTEEEEEGGGT
T ss_pred CCEEEEEeEEEEECCEE----EEeeeEEEEcCCCEEEEECCCCcHHHHHHHHHHcCCC---CCccEEEECCEECcccccc
Confidence 45799999999998766 9999999999999999999999999999999999999 9999999998542
Q ss_pred ------CCeEEEEecCCCCCCcccCCcccChHHHHHhcCCCCCccHHHHHHHHHHhhc--CCCccCCCCCCcCCCcchhh
Q 021362 149 ------PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDD 220 (313)
Q Consensus 149 ------~~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~~~~~~~~~~~~l~~l~~--~~~~~~~~LSgG~kqRv~ia 220 (313)
.+.++||||+...++ ++||+||+.++...++.+.....+++.++++.++. ..++++.+|||||||||+||
T Consensus 74 ~~~~~~~r~ig~v~Q~~~l~~--~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalA 151 (372)
T 1g29_1 74 IFVPPKDRDIAMVFQSYALYP--HMTVYDNIAFPLKLRKVPRQEIDQRVREVAELLGLTELLNRKPRELSGGQRQRVALG 151 (372)
T ss_dssp EECCGGGSSEEEECSCCCCCT--TSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTCGGGTTCCGGGSCHHHHHHHHHH
T ss_pred ccCCHhHCCEEEEeCCCccCC--CCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCCcccCCHHHHHHHHHH
Confidence 235999999955433 59999999998776655544445678899999883 46778889999999999999
Q ss_pred hhhccCceEEEEcCCccccCh----hhHHHHHhhcc----ceEEEEcChHHHHH---HHh----hcccccCCchHHHH
Q 021362 221 ILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFD----EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAK 283 (313)
Q Consensus 221 ~al~~~ar~Li~d~~~lllDE----~~~~~l~~l~~----~~i~vtHd~~~~~~---rv~----griv~~G~~~ev~~ 283 (313)
+|++.++++|++|+|+..||. .+++.|+++.+ ..|+||||++++.. |++ |+++..|+++++..
T Consensus 152 rAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~g~~~~l~~ 229 (372)
T 1g29_1 152 RAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQVEAMTMGDRIAVMNRGVLQQVGSPDEVYD 229 (372)
T ss_dssp HHHHTCCSEEEEECTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred HHHhcCCCEEEECCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHHHHHHhCCEEEEEeCCEEEEeCCHHHHHh
Confidence 999999999999999999999 45556666543 24799999999986 655 99999999998864
|
| >2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.7e-42 Score=312.19 Aligned_cols=199 Identities=16% Similarity=0.200 Sum_probs=165.6
Q ss_pred cEEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCCC------
Q 021362 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPP------ 149 (313)
Q Consensus 76 ~~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~~------ 149 (313)
++|+++||++.|++.. +|+|+||+|++||+++|+||||||||||+|+|+|+++ |++|+|.++|++..
T Consensus 23 ~~l~i~~l~~~y~~~~----vL~~vsl~i~~Gei~~liG~NGsGKSTLlk~l~Gl~~---p~~G~I~~~g~~i~~~~~~~ 95 (263)
T 2olj_A 23 QMIDVHQLKKSFGSLE----VLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLED---FDEGEIIIDGINLKAKDTNL 95 (263)
T ss_dssp CSEEEEEEEEEETTEE----EEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSC---CSEEEEEETTEESSSTTCCH
T ss_pred heEEEEeEEEEECCEE----EEEeeEEEEcCCCEEEEEcCCCCcHHHHHHHHHcCCC---CCCcEEEECCEECCCccccH
Confidence 3799999999998766 9999999999999999999999999999999999999 99999999996542
Q ss_pred ----CeEEEEecCCCCCCcccCCcccChHHHH-HhcCCCCCccHHHHHHHHHHhhc--CCCccCCCCCCcCCCcchhhhh
Q 021362 150 ----DVATVLPMDGFHLYLSQLDAMEDPKEAH-ARRGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDIL 222 (313)
Q Consensus 150 ----~~i~~v~qd~~~~~~~~ltv~e~~~~~~-~~~~~~~~~~~~~~~~~l~~l~~--~~~~~~~~LSgG~kqRv~ia~a 222 (313)
+.++|++|++..++ .+|++||+.++. ...+.+.....+++.++++.++. ..++++.+|||||||||+||+|
T Consensus 96 ~~~~~~i~~v~Q~~~l~~--~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~lAra 173 (263)
T 2olj_A 96 NKVREEVGMVFQRFNLFP--HMTVLNNITLAPMKVRKWPREKAEAKAMELLDKVGLKDKAHAYPDSLSGGQAQRVAIARA 173 (263)
T ss_dssp HHHHHHEEEECSSCCCCT--TSCHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHH
T ss_pred HHHhCcEEEEeCCCcCCC--CCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCChhhCCHHHHHHHHHHHH
Confidence 24999999965433 589999999864 33443323334567889998884 4567788999999999999999
Q ss_pred hccCceEEEEcCCccccCh----hhHHHHHhhccc---eEEEEcChHHHHH---HHh----hcccccCCchHHHH
Q 021362 223 VGLQHKVVIVDGNYLFLDG----GVWKDVSSMFDE---KWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAK 283 (313)
Q Consensus 223 l~~~ar~Li~d~~~lllDE----~~~~~l~~l~~~---~i~vtHd~~~~~~---rv~----griv~~G~~~ev~~ 283 (313)
++.++++|++|+|+..||. .+++.|+++.++ .+++|||++++.. |++ |++++.|+++++..
T Consensus 174 L~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 248 (263)
T 2olj_A 174 LAMEPKIMLFDEPTSALDPEMVGEVLSVMKQLANEGMTMVVVTHEMGFAREVGDRVLFMDGGYIIEEGKPEDLFD 248 (263)
T ss_dssp HTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred HHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 9999999999999999999 556666665432 4799999999876 555 89999999988754
|
| >1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=3.4e-42 Score=311.31 Aligned_cols=202 Identities=13% Similarity=0.087 Sum_probs=167.0
Q ss_pred CCccEEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCCC---
Q 021362 73 REIPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPP--- 149 (313)
Q Consensus 73 ~~m~~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~~--- 149 (313)
+.|++|+++||++.|++.. +|+++||+|++||+++|+||||||||||+|+|+|+++ |++|+|.++|++..
T Consensus 11 ~~~~~l~i~~l~~~y~~~~----vl~~vsl~i~~Gei~~l~G~NGsGKSTLlk~l~Gl~~---p~~G~I~~~g~~~~~~~ 83 (256)
T 1vpl_A 11 HHMGAVVVKDLRKRIGKKE----ILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIK---PSSGIVTVFGKNVVEEP 83 (256)
T ss_dssp ---CCEEEEEEEEEETTEE----EEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSC---CSEEEEEETTEETTTCH
T ss_pred ccCCeEEEEEEEEEECCEE----EEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCC---CCceEEEECCEECCccH
Confidence 4588999999999998766 9999999999999999999999999999999999999 99999999997642
Q ss_pred ----CeEEEEecCCCCCCcccCCcccChHHHHHhcCCCCCccHHHHHHHHHHhhc--CCCccCCCCCCcCCCcchhhhhh
Q 021362 150 ----DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDILV 223 (313)
Q Consensus 150 ----~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~~~~~~~~~~~~l~~l~~--~~~~~~~~LSgG~kqRv~ia~al 223 (313)
+.++|++|++..++ .+|++||+.+....++.+.....+++.++++.++. ..++++.+||||||||++||+|+
T Consensus 84 ~~~~~~i~~v~q~~~l~~--~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qRv~lAraL 161 (256)
T 1vpl_A 84 HEVRKLISYLPEEAGAYR--NMQGIEYLRFVAGFYASSSSEIEEMVERATEIAGLGEKIKDRVSTYSKGMVRKLLIARAL 161 (256)
T ss_dssp HHHHTTEEEECTTCCCCT--TSBHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCGGGGGSBGGGCCHHHHHHHHHHHHH
T ss_pred HHHhhcEEEEcCCCCCCC--CCcHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCchHhcCChhhCCHHHHHHHHHHHHH
Confidence 35999999965443 48999999987655544332234567888998884 34667789999999999999999
Q ss_pred ccCceEEEEcCCccccCh----hhHHHHHhhccc---eEEEEcChHHHHH---HHh----hcccccCCchHHHH
Q 021362 224 GLQHKVVIVDGNYLFLDG----GVWKDVSSMFDE---KWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAK 283 (313)
Q Consensus 224 ~~~ar~Li~d~~~lllDE----~~~~~l~~l~~~---~i~vtHd~~~~~~---rv~----griv~~G~~~ev~~ 283 (313)
+.++++|++|+|+..||. .+++.|+++.++ ++++|||++++.. |++ |++++.|+++++..
T Consensus 162 ~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 235 (256)
T 1vpl_A 162 MVNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLTILVSSHNMLEVEFLCDRIALIHNGTIVETGTVEELKE 235 (256)
T ss_dssp TTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEEECCHHHHTTTCSEEEEEETTEEEEEEEHHHHHH
T ss_pred HcCCCEEEEeCCccccCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHHCCEEEEEECCEEEEecCHHHHHH
Confidence 999999999999999999 556666665432 4799999999876 555 89999999888754
|
| >4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis} | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-41 Score=309.82 Aligned_cols=199 Identities=15% Similarity=0.145 Sum_probs=168.7
Q ss_pred ccEEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCCC-----
Q 021362 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPP----- 149 (313)
Q Consensus 75 m~~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~~----- 149 (313)
+++|+++||++.|++.. +|+|+||+|++||++||+||||||||||+|+|+|+++ |++|+|.++|++..
T Consensus 9 ~~~l~~~~l~~~~~~~~----vL~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~---p~~G~I~~~g~~~~~~~~~ 81 (266)
T 4g1u_C 9 VALLEASHLHYHVQQQA----LINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLS---PSHGECHLLGQNLNSWQPK 81 (266)
T ss_dssp CCEEEEEEEEEEETTEE----EEEEEEEEEETTCEEEEECCTTSCHHHHHHHHTSSSC---CSSCEEEETTEETTTSCHH
T ss_pred cceEEEEeEEEEeCCee----EEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC---CCCcEEEECCEECCcCCHH
Confidence 46899999999999877 9999999999999999999999999999999999999 99999999997643
Q ss_pred ---CeEEEEecCCCCCCcccCCcccChHHHHHhcCCCCCccHHHHHHHHHHhhc--CCCccCCCCCCcCCCcchhhhhhc
Q 021362 150 ---DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDILVG 224 (313)
Q Consensus 150 ---~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~~~~~~~~~~~~l~~l~~--~~~~~~~~LSgG~kqRv~ia~al~ 224 (313)
+.++|++|++..++ .+||+||+.++...+ ......+++.++++.++. ..++++.+|||||||||+||+|++
T Consensus 82 ~~~~~i~~v~q~~~~~~--~~tv~e~l~~~~~~~--~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~QRv~iAraL~ 157 (266)
T 4g1u_C 82 ALARTRAVMRQYSELAF--PFSVSEVIQMGRAPY--GGSQDRQALQQVMAQTDCLALAQRDYRVLSGGEQQRVQLARVLA 157 (266)
T ss_dssp HHHHHEEEECSCCCCCS--CCBHHHHHHGGGTTS--CSTTHHHHHHHHHHHTTCSTTTTSBGGGCCHHHHHHHHHHHHHH
T ss_pred HHhheEEEEecCCccCC--CCCHHHHHHhhhhhc--CcHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHh
Confidence 24899999966544 389999998865433 334456778899999984 456677899999999999999999
Q ss_pred c------CceEEEEcCCccccCh----hhHHHHHhhccc----eEEEEcChHHHHH---HHh----hcccccCCchHHHH
Q 021362 225 L------QHKVVIVDGNYLFLDG----GVWKDVSSMFDE----KWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAK 283 (313)
Q Consensus 225 ~------~ar~Li~d~~~lllDE----~~~~~l~~l~~~----~i~vtHd~~~~~~---rv~----griv~~G~~~ev~~ 283 (313)
. ++++|++|+|+..||+ .+++.|+++.++ .++||||++++.. |++ |++++.|+++++..
T Consensus 158 ~~~~~~~~p~lLllDEPts~LD~~~~~~i~~~l~~l~~~~~~tvi~vtHdl~~~~~~~d~v~vl~~G~i~~~g~~~~~~~ 237 (266)
T 4g1u_C 158 QLWQPQPTPRWLFLDEPTSALDLYHQQHTLRLLRQLTRQEPLAVCCVLHDLNLAALYADRIMLLAQGKLVACGTPEEVLN 237 (266)
T ss_dssp HTCCSSCCCEEEEECCCCSSCCHHHHHHHHHHHHHHHHHSSEEEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHHHCC
T ss_pred cccccCCCCCEEEEeCccccCCHHHHHHHHHHHHHHHHcCCCEEEEEEcCHHHHHHhCCEEEEEECCEEEEEcCHHHHhC
Confidence 9 9999999999999999 566666666432 4699999999986 655 99999999998854
Q ss_pred H
Q 021362 284 W 284 (313)
Q Consensus 284 ~ 284 (313)
.
T Consensus 238 ~ 238 (266)
T 4g1u_C 238 A 238 (266)
T ss_dssp H
T ss_pred c
Confidence 3
|
| >3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.6e-42 Score=306.80 Aligned_cols=200 Identities=16% Similarity=0.164 Sum_probs=160.1
Q ss_pred EEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCCC-------
Q 021362 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPP------- 149 (313)
Q Consensus 77 ~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~~------- 149 (313)
||+++||++.|++......+|+|+||+|++||+++|+||||||||||+|+|+|+++ |++|+|.++|.+..
T Consensus 1 ~l~~~~l~~~y~~~~~~~~~L~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~---p~~G~I~~~g~~~~~~~~~~~ 77 (235)
T 3tif_A 1 MVKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDK---PTEGEVYIDNIKTNDLDDDEL 77 (235)
T ss_dssp CEEEEEEEEEEEETTEEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSC---CSEEEEEETTEECTTCCHHHH
T ss_pred CEEEEEEEEEeCCCCcceeeEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC---CCceEEEECCEEcccCCHHHH
Confidence 48999999999853222349999999999999999999999999999999999999 99999999997642
Q ss_pred -----CeEEEEecCCCCCCcccCCcccChHHHHHhc---CCCCCccHHHHHHHHHHhhcC---CCccCCCCCCcCCCcch
Q 021362 150 -----DVATVLPMDGFHLYLSQLDAMEDPKEAHARR---GAPWTFNPLLLLNCLKNLRNQ---GSVYAPSFDHGVGDPVE 218 (313)
Q Consensus 150 -----~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~---~~~~~~~~~~~~~~l~~l~~~---~~~~~~~LSgG~kqRv~ 218 (313)
+.++|+||++..++ .+|++||+.++.... +.+.....+++.++++.++.. .++++.+|||||||||+
T Consensus 78 ~~~~~~~i~~v~Q~~~l~~--~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~QRv~ 155 (235)
T 3tif_A 78 TKIRRDKIGFVFQQFNLIP--LLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERFANHKPNQLSGGQQQRVA 155 (235)
T ss_dssp HHHHHHHEEEECTTCCCCT--TSCHHHHHHHHHHTCSSSCCCHHHHHHHHHHHHHHTTCCGGGTTCCGGGSCHHHHHHHH
T ss_pred HHHhhccEEEEecCCccCC--CCcHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHHCCCChhhhhCChhhCCHHHHHHHH
Confidence 24999999975443 489999999876543 222233455677888888843 36678899999999999
Q ss_pred hhhhhccCceEEEEcCCccccCh----hhHHHHHhhccc----eEEEEcChHHHHH--HHh----hcccccCCchHH
Q 021362 219 DDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFDE----KWFIEVDLDTAMQ--RVL----KRHISTGKPPDV 281 (313)
Q Consensus 219 ia~al~~~ar~Li~d~~~lllDE----~~~~~l~~l~~~----~i~vtHd~~~~~~--rv~----griv~~G~~~ev 281 (313)
||+|++.++++|++|+|+..||+ .+++.|+++.++ .|+||||++.+.. |++ |++++.++++++
T Consensus 156 iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~d~i~~l~~G~i~~~~~~~~~ 232 (235)
T 3tif_A 156 IARALANNPPIILADQPTWALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDINVARFGERIIYLKDGEVEREEKLRGF 232 (235)
T ss_dssp HHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHHHHTTSSEEEEEETTEEEEEEECC--
T ss_pred HHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEcCCHHHHHhCCEEEEEECCEEEEEcChhhh
Confidence 99999999999999999999999 566666666432 4799999996533 554 888888877665
|
| >1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=6.1e-42 Score=310.75 Aligned_cols=198 Identities=15% Similarity=0.139 Sum_probs=165.3
Q ss_pred EEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCCC-------
Q 021362 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPP------- 149 (313)
Q Consensus 77 ~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~~------- 149 (313)
+|+++||++.|++.. +|+|+||+|++||+++|+||||||||||+|+|+|+++ |++|+|.++|++..
T Consensus 6 ~l~i~~l~~~y~~~~----vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~---p~~G~i~~~g~~~~~~~~~~~ 78 (262)
T 1b0u_A 6 KLHVIDLHKRYGGHE----VLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEK---PSEGAIIVNGQNINLVRDKDG 78 (262)
T ss_dssp CEEEEEEEEEETTEE----EEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSC---CSEEEEEETTEECCEEECTTS
T ss_pred eEEEeeEEEEECCEE----EEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC---CCCcEEEECCEEccccccccc
Confidence 699999999998766 9999999999999999999999999999999999999 99999999997643
Q ss_pred --------------CeEEEEecCCCCCCcccCCcccChHHHH-HhcCCCCCccHHHHHHHHHHhhcC---CCccCCCCCC
Q 021362 150 --------------DVATVLPMDGFHLYLSQLDAMEDPKEAH-ARRGAPWTFNPLLLLNCLKNLRNQ---GSVYAPSFDH 211 (313)
Q Consensus 150 --------------~~i~~v~qd~~~~~~~~ltv~e~~~~~~-~~~~~~~~~~~~~~~~~l~~l~~~---~~~~~~~LSg 211 (313)
+.++|+||++..++ .+||+||+.++. ..++.+.....+++.++++.++.. .++++.+|||
T Consensus 79 ~~~~~~~~~~~~~~~~i~~v~Q~~~l~~--~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSg 156 (262)
T 1b0u_A 79 QLKVADKNQLRLLRTRLTMVFQHFNLWS--HMTVLENVMEAPIQVLGLSKHDARERALKYLAKVGIDERAQGKYPVHLSG 156 (262)
T ss_dssp SEEESCHHHHHHHHHHEEEECSSCCCCT--TSCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCCHHHHTSCGGGSCH
T ss_pred cccccChhhHHHHhcceEEEecCcccCC--CCcHHHHHHhhHHHhcCCCHHHHHHHHHHHHHHcCCCchhhcCCcccCCH
Confidence 24999999965433 589999999864 333433233346678899999843 4667789999
Q ss_pred cCCCcchhhhhhccCceEEEEcCCccccCh----hhHHHHHhhccc---eEEEEcChHHHHH---HHh----hcccccCC
Q 021362 212 GVGDPVEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFDE---KWFIEVDLDTAMQ---RVL----KRHISTGK 277 (313)
Q Consensus 212 G~kqRv~ia~al~~~ar~Li~d~~~lllDE----~~~~~l~~l~~~---~i~vtHd~~~~~~---rv~----griv~~G~ 277 (313)
||||||+||+|++.++++|++|+|+..||. .+++.|+++.++ .+++|||++++.. |++ |++++.|+
T Consensus 157 Gq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~~g~ 236 (262)
T 1b0u_A 157 GQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIEEEGD 236 (262)
T ss_dssp HHHHHHHHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEECSCHHHHHHHCSEEEEEETTEEEEEEC
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCC
Confidence 999999999999999999999999999999 455666665432 4799999999876 555 99999999
Q ss_pred chHHHH
Q 021362 278 PPDVAK 283 (313)
Q Consensus 278 ~~ev~~ 283 (313)
++++..
T Consensus 237 ~~~~~~ 242 (262)
T 1b0u_A 237 PEQVFG 242 (262)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 988754
|
| >2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A | Back alignment and structure |
|---|
Probab=100.00 E-value=8.2e-42 Score=303.06 Aligned_cols=193 Identities=16% Similarity=0.076 Sum_probs=158.4
Q ss_pred cEEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCCC------
Q 021362 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPP------ 149 (313)
Q Consensus 76 ~~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~~------ 149 (313)
+||+++|+++.|++.. +|+|+||+|++|++++|+||||||||||+|+|+|+++ |++|+|.++|++..
T Consensus 3 ~~l~~~~l~~~y~~~~----~l~~vsl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~---p~~G~i~~~g~~~~~~~~~~ 75 (224)
T 2pcj_A 3 EILRAENIKKVIRGYE----ILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDA---PTEGKVFLEGKEVDYTNEKE 75 (224)
T ss_dssp EEEEEEEEEEEETTEE----EEEEEEEEEETTCEEEEEECTTSCHHHHHHHHTTSSC---CSEEEEEETTEECCSSCHHH
T ss_pred cEEEEEeEEEEECCEe----eEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC---CCceEEEECCEECCCCCHHH
Confidence 4799999999998766 9999999999999999999999999999999999999 99999999997642
Q ss_pred ------CeEEEEecCCCCCCcccCCcccChHHHHHhcCCCCCccHHHHHHHHHHhhc--CCCccCCCCCCcCCCcchhhh
Q 021362 150 ------DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDI 221 (313)
Q Consensus 150 ------~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~~~~~~~~~~~~l~~l~~--~~~~~~~~LSgG~kqRv~ia~ 221 (313)
+.++|++|++..++ .+|+.||+.++...++.+.....+++.++++.++. ..++++.+||||||||++||+
T Consensus 76 ~~~~~~~~i~~v~q~~~l~~--~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lar 153 (224)
T 2pcj_A 76 LSLLRNRKLGFVFQFHYLIP--ELTALENVIVPMLKMGKPKKEAKERGEYLLSELGLGDKLSRKPYELSGGEQQRVAIAR 153 (224)
T ss_dssp HHHHHHHHEEEECSSCCCCT--TSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCTTCTTCCGGGSCHHHHHHHHHHH
T ss_pred HHHHHhCcEEEEecCcccCC--CCCHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHH
Confidence 34999999965433 48999999987665554333345677889999884 356677899999999999999
Q ss_pred hhccCceEEEEcCCccccCh----hhHHHHHhhccc---eEEEEcChHHHHH--HHh----hcccccCC
Q 021362 222 LVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFDE---KWFIEVDLDTAMQ--RVL----KRHISTGK 277 (313)
Q Consensus 222 al~~~ar~Li~d~~~lllDE----~~~~~l~~l~~~---~i~vtHd~~~~~~--rv~----griv~~G~ 277 (313)
|++.++++|++|+|+..||. .+++.|+++.++ .+++|||++++.. |++ |++++.|+
T Consensus 154 al~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~~~~~d~v~~l~~G~i~~~g~ 222 (224)
T 2pcj_A 154 ALANEPILLFADEPTGNLDSANTKRVMDIFLKINEGGTSIVMVTHERELAELTHRTLEMKDGKVVGEIT 222 (224)
T ss_dssp HTTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHTTSSEEEEEETTEEEEEEE
T ss_pred HHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHhCCEEEEEECCEEEEEee
Confidence 99999999999999999999 455566655432 4799999998722 443 67766553
|
| >1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-41 Score=321.06 Aligned_cols=202 Identities=14% Similarity=0.101 Sum_probs=167.6
Q ss_pred ccEEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCC------
Q 021362 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP------ 148 (313)
Q Consensus 75 m~~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~------ 148 (313)
|.+|+++||+|.|++.. ..+|+|+||+|++||+++|+||||||||||+|+|+|+++ |++|+|.++|++.
T Consensus 1 M~~l~i~~l~~~y~~~~--~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~---p~~G~I~i~g~~i~~~~~~ 75 (353)
T 1oxx_K 1 MVRIIVKNVSKVFKKGK--VVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDV---PSTGELYFDDRLVASNGKL 75 (353)
T ss_dssp CCCEEEEEEEEEEGGGT--EEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSC---CSEEEEEETTEEEEETTEE
T ss_pred CcEEEEEeEEEEECCEe--eeeEeceEEEECCCCEEEEECCCCCcHHHHHHHHhCCCC---CCceEEEECCEECcccccc
Confidence 44799999999997521 018999999999999999999999999999999999999 9999999998542
Q ss_pred -----CCeEEEEecCCCCCCcccCCcccChHHHHHhcCCCCCccHHHHHHHHHHhhc--CCCccCCCCCCcCCCcchhhh
Q 021362 149 -----PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDI 221 (313)
Q Consensus 149 -----~~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~~~~~~~~~~~~l~~l~~--~~~~~~~~LSgG~kqRv~ia~ 221 (313)
.+.++|+||+...++ ++||+||+.++...++.+.....+++.++++.++. ..++++.+|||||||||+||+
T Consensus 76 ~~~~~~r~ig~v~Q~~~l~~--~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~LSGGq~QRvalAr 153 (353)
T 1oxx_K 76 IVPPEDRKIGMVFQTWALYP--NLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHHVLNHFPRELSGAQQQRVALAR 153 (353)
T ss_dssp SSCGGGSCEEEEETTSCCCT--TSCHHHHHHGGGTTSSCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHH
T ss_pred cCChhhCCEEEEeCCCccCC--CCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHH
Confidence 245999999965433 59999999987655554433445678899999883 457788899999999999999
Q ss_pred hhccCceEEEEcCCccccCh----hhHHHHHhhcc----ceEEEEcChHHHHH---HHh----hcccccCCchHHHH
Q 021362 222 LVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFD----EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAK 283 (313)
Q Consensus 222 al~~~ar~Li~d~~~lllDE----~~~~~l~~l~~----~~i~vtHd~~~~~~---rv~----griv~~G~~~ev~~ 283 (313)
|++.++++|++|+|+..||. .+++.|+++.+ ..|+||||++++.. |++ |+++..|+++++..
T Consensus 154 aL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~~~~~adri~vl~~G~i~~~g~~~~l~~ 230 (353)
T 1oxx_K 154 ALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDPADIFAIADRVGVLVKGKLVQVGKPEDLYD 230 (353)
T ss_dssp HHTTCCSEEEEESTTTTSCGGGHHHHHHHHHHHHHHHCCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred HHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 99999999999999999999 45566665543 24799999999987 655 99999999998854
|
| >1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-41 Score=308.07 Aligned_cols=197 Identities=14% Similarity=0.122 Sum_probs=163.1
Q ss_pred ccEEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCCC-----
Q 021362 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPP----- 149 (313)
Q Consensus 75 m~~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~~----- 149 (313)
+++|+++||++.|++.. +|+|+||+|++||+++|+||||||||||+|+|+|+++ |++|+|.++|++..
T Consensus 5 ~~~l~i~~l~~~y~~~~----vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~---p~~G~i~~~g~~~~~~~~~ 77 (257)
T 1g6h_A 5 MEILRTENIVKYFGEFK----ALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLK---ADEGRVYFENKDITNKEPA 77 (257)
T ss_dssp CEEEEEEEEEEEETTEE----EEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSC---CSEEEEEETTEECTTCCHH
T ss_pred CcEEEEeeeEEEECCEe----eEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCcEEEECCEECCCCCHH
Confidence 45899999999998766 9999999999999999999999999999999999999 99999999997642
Q ss_pred ----CeEEEEecCCCCCCcccCCcccChHHHHHh--cC-----------CCCCccHHHHHHHHHHhhc--CCCccCCCCC
Q 021362 150 ----DVATVLPMDGFHLYLSQLDAMEDPKEAHAR--RG-----------APWTFNPLLLLNCLKNLRN--QGSVYAPSFD 210 (313)
Q Consensus 150 ----~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~--~~-----------~~~~~~~~~~~~~l~~l~~--~~~~~~~~LS 210 (313)
+.++|++|++..++ .+|+.||+.++... .+ .......+++.++++.++. ..++++.+||
T Consensus 78 ~~~~~~i~~v~q~~~l~~--~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS 155 (257)
T 1g6h_A 78 ELYHYGIVRTFQTPQPLK--EMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLYDRKAGELS 155 (257)
T ss_dssp HHHHHTEEECCCCCGGGG--GSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCGGGTTSBGGGSC
T ss_pred HHHhCCEEEEccCCccCC--CCcHHHHHHHHHhhhccCcccccccccccCCHHHHHHHHHHHHHHcCCchhhCCCchhCC
Confidence 24999999965433 48999999886432 12 1222234567889998883 4567788999
Q ss_pred CcCCCcchhhhhhccCceEEEEcCCccccCh----hhHHHHHhhccc---eEEEEcChHHHHH---HHh----hcccccC
Q 021362 211 HGVGDPVEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFDE---KWFIEVDLDTAMQ---RVL----KRHISTG 276 (313)
Q Consensus 211 gG~kqRv~ia~al~~~ar~Li~d~~~lllDE----~~~~~l~~l~~~---~i~vtHd~~~~~~---rv~----griv~~G 276 (313)
|||||||+||+|++.++++|++|+|+..||. .+++.|+++.++ .+++|||++++.. |++ |++++.|
T Consensus 156 gGqkQrv~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~~g 235 (257)
T 1g6h_A 156 GGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRLDIVLNYIDHLYVMFNGQIIAEG 235 (257)
T ss_dssp HHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCSTTGGGCSEEEEEETTEEEEEE
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEEe
Confidence 9999999999999999999999999999999 556666665432 4799999998865 555 8999999
Q ss_pred CchH
Q 021362 277 KPPD 280 (313)
Q Consensus 277 ~~~e 280 (313)
++++
T Consensus 236 ~~~~ 239 (257)
T 1g6h_A 236 RGEE 239 (257)
T ss_dssp ESHH
T ss_pred CHHH
Confidence 9888
|
| >1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-40 Score=298.22 Aligned_cols=197 Identities=15% Similarity=0.109 Sum_probs=162.2
Q ss_pred cEEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCCC------
Q 021362 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPP------ 149 (313)
Q Consensus 76 ~~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~~------ 149 (313)
+||+++||++.|++.. +|+|+||+|++||+++|+||||||||||+|+|+|+++ |++|+|.++|.+..
T Consensus 5 ~~l~~~~l~~~y~~~~----vl~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~---p~~G~i~~~g~~~~~~~~~~ 77 (240)
T 1ji0_A 5 IVLEVQSLHVYYGAIH----AIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVR---AQKGKIIFNGQDITNKPAHV 77 (240)
T ss_dssp EEEEEEEEEEEETTEE----EEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSC---CSEEEEEETTEECTTCCHHH
T ss_pred ceEEEEeEEEEECCee----EEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCceEEECCEECCCCCHHH
Confidence 4799999999998766 9999999999999999999999999999999999999 99999999997642
Q ss_pred ---CeEEEEecCCCCCCcccCCcccChHHHHHhcCCCCCccHHHHHHHHHHhh---cCCCccCCCCCCcCCCcchhhhhh
Q 021362 150 ---DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLR---NQGSVYAPSFDHGVGDPVEDDILV 223 (313)
Q Consensus 150 ---~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~~~~~~~~~~~~l~~l~---~~~~~~~~~LSgG~kqRv~ia~al 223 (313)
+.++|++|++..+. .+|++||+.++.. .........+++.++++.++ ...++++.+||||||||++||+|+
T Consensus 78 ~~~~~i~~v~q~~~l~~--~ltv~enl~~~~~-~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LSgGq~qrv~lAraL 154 (240)
T 1ji0_A 78 INRMGIALVPEGRRIFP--ELTVYENLMMGAY-NRKDKEGIKRDLEWIFSLFPRLKERLKQLGGTLSGGEQQMLAIGRAL 154 (240)
T ss_dssp HHHTTEEEECSSCCCCT--TSBHHHHHHGGGT-TCCCSSHHHHHHHHHHHHCHHHHTTTTSBSSSSCHHHHHHHHHHHHH
T ss_pred HHhCCEEEEecCCccCC--CCcHHHHHHHhhh-cCCCHHHHHHHHHHHHHHcccHhhHhcCChhhCCHHHHHHHHHHHHH
Confidence 23999999965443 4899999988531 12222333456778888774 345678889999999999999999
Q ss_pred ccCceEEEEcCCccccCh----hhHHHHHhhcc---ceEEEEcChHHHHH---HHh----hcccccCCchHHH
Q 021362 224 GLQHKVVIVDGNYLFLDG----GVWKDVSSMFD---EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVA 282 (313)
Q Consensus 224 ~~~ar~Li~d~~~lllDE----~~~~~l~~l~~---~~i~vtHd~~~~~~---rv~----griv~~G~~~ev~ 282 (313)
+.++++|++|+|+..||. .+++.|+++.+ ..+++|||++++.. |++ |++++.|+++++.
T Consensus 155 ~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 227 (240)
T 1ji0_A 155 MSRPKLLMMDEPSLGLAPILVSEVFEVIQKINQEGTTILLVEQNALGALKVAHYGYVLETGQIVLEGKASELL 227 (240)
T ss_dssp TTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHCSEEEEEETTEEEEEEEHHHHH
T ss_pred HcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEEcCHHHHh
Confidence 999999999999999999 45566666542 24799999998876 554 8999889888875
|
| >3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-40 Score=311.71 Aligned_cols=193 Identities=14% Similarity=0.135 Sum_probs=164.2
Q ss_pred EEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCCC------C
Q 021362 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPP------D 150 (313)
Q Consensus 77 ~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~~------~ 150 (313)
||+++||+|.|++ . +|+|+||+|++||+++|+||||||||||+|+|+|+++ |++|+|.++|++.. +
T Consensus 1 ml~~~~l~~~y~~-~----~l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~---p~~G~I~~~g~~i~~~~~~~r 72 (348)
T 3d31_A 1 MIEIESLSRKWKN-F----SLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHV---PDSGRILLDGKDVTDLSPEKH 72 (348)
T ss_dssp CEEEEEEEEECSS-C----EEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSC---CSEEEEEETTEECTTSCHHHH
T ss_pred CEEEEEEEEEECC-E----EEeeeEEEEcCCCEEEEECCCCccHHHHHHHHHcCCC---CCCcEEEECCEECCCCchhhC
Confidence 4899999999964 2 8999999999999999999999999999999999999 99999999997642 3
Q ss_pred eEEEEecCCCCCCcccCCcccChHHHHHhcCCCCCccHHHHHHHHHHhhc--CCCccCCCCCCcCCCcchhhhhhccCce
Q 021362 151 VATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDILVGLQHK 228 (313)
Q Consensus 151 ~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~~~~~~~~~~~~l~~l~~--~~~~~~~~LSgG~kqRv~ia~al~~~ar 228 (313)
.++|+||+...++ ++||+||+.++...++.+. . +++.++++.++. ..++++.+|||||||||+||+|++.+++
T Consensus 73 ~ig~v~Q~~~l~~--~ltv~enl~~~~~~~~~~~--~-~~v~~~l~~~~L~~~~~~~~~~LSgGq~QRvalAraL~~~P~ 147 (348)
T 3d31_A 73 DIAFVYQNYSLFP--HMNVKKNLEFGMRMKKIKD--P-KRVLDTARDLKIEHLLDRNPLTLSGGEQQRVALARALVTNPK 147 (348)
T ss_dssp TCEEECTTCCCCT--TSCHHHHHHHHHHHHCCCC--H-HHHHHHHHHTTCTTTTTSCGGGSCHHHHHHHHHHHHTTSCCS
T ss_pred cEEEEecCcccCC--CCCHHHHHHHHHHHcCCCH--H-HHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcCCC
Confidence 5999999965433 5999999999876655433 2 778899999984 4567788999999999999999999999
Q ss_pred EEEEcCCccccCh----hhHHHHHhhcc----ceEEEEcChHHHHH---HHh----hcccccCCchHHH
Q 021362 229 VVIVDGNYLFLDG----GVWKDVSSMFD----EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVA 282 (313)
Q Consensus 229 ~Li~d~~~lllDE----~~~~~l~~l~~----~~i~vtHd~~~~~~---rv~----griv~~G~~~ev~ 282 (313)
+|++|+|+..||. .+++.|+++.+ ..|+||||++++.. |++ |+++..|+++++.
T Consensus 148 lLLLDEP~s~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~~~~~~~adri~vl~~G~i~~~g~~~~~~ 216 (348)
T 3d31_A 148 ILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLHITHDQTEARIMADRIAVVMDGKLIQVGKPEEIF 216 (348)
T ss_dssp EEEEESSSTTSCHHHHHHHHHHHHHHHHHTTCEEEEEESCHHHHHHHCSEEEEESSSCEEEEECHHHHH
T ss_pred EEEEECccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHH
Confidence 9999999999999 55666666543 24799999999877 555 9999999998885
|
| >2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.9e-41 Score=305.93 Aligned_cols=201 Identities=13% Similarity=0.029 Sum_probs=163.1
Q ss_pred cEEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCCC------
Q 021362 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPP------ 149 (313)
Q Consensus 76 ~~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~~------ 149 (313)
++|+++||++.|++.. +|+|+||+|++||+++|+||||||||||+|+|+|+++ |++|+|.++|.+..
T Consensus 20 ~~l~~~~l~~~y~~~~----vL~~isl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~---p~~G~I~~~g~~~~~~~~~~ 92 (279)
T 2ihy_A 20 MLIQLDQIGRMKQGKT----ILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEP---ATSGTVNLFGKMPGKVGYSA 92 (279)
T ss_dssp EEEEEEEEEEEETTEE----EEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSC---CSEEEEEETTBCCC---CCH
T ss_pred ceEEEEeEEEEECCEE----EEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC---CCCeEEEECCEEcccccCCH
Confidence 3799999999998766 9999999999999999999999999999999999999 99999999997653
Q ss_pred ----CeEEEEecCCCCCCcccCCcccChHHHHHh----cCCCCCccHHHHHHHHHHhhc--CCCccCCCCCCcCCCcchh
Q 021362 150 ----DVATVLPMDGFHLYLSQLDAMEDPKEAHAR----RGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVED 219 (313)
Q Consensus 150 ----~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~----~~~~~~~~~~~~~~~l~~l~~--~~~~~~~~LSgG~kqRv~i 219 (313)
+.++|++|++...+...+|++||+.++... ++.+.....+++.++++.++. ..++++.+|||||||||+|
T Consensus 93 ~~~~~~i~~v~Q~~~~~~~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqkqRv~l 172 (279)
T 2ihy_A 93 ETVRQHIGFVSHSLLEKFQEGERVIDVVISGAFKSIGVYQDIDDEIRNEAHQLLKLVGMSAKAQQYIGYLSTGEKQRVMI 172 (279)
T ss_dssp HHHHTTEEEECHHHHTTSCTTSBHHHHHHTTC---------CCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHH
T ss_pred HHHcCcEEEEEcCcccccCCCCCHHHHHHhhhhhccccccCCcHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHH
Confidence 359999998643333347999999874211 111222334567888998884 4567788999999999999
Q ss_pred hhhhccCceEEEEcCCccccCh----hhHHHHHhhcc---ce--EEEEcChHHHHH---HHh----hcccccCCchHHHH
Q 021362 220 DILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFD---EK--WFIEVDLDTAMQ---RVL----KRHISTGKPPDVAK 283 (313)
Q Consensus 220 a~al~~~ar~Li~d~~~lllDE----~~~~~l~~l~~---~~--i~vtHd~~~~~~---rv~----griv~~G~~~ev~~ 283 (313)
|+|++.++++|++|+|+..||. .+++.|+++.+ .. +++|||++++.. |++ |++++.|+++++..
T Consensus 173 AraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tv~~iivtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 252 (279)
T 2ihy_A 173 ARALMGQPQVLILDEPAAGLDFIARESLLSILDSLSDSYPTLAMIYVTHFIEEITANFSKILLLKDGQSIQQGAVEDILT 252 (279)
T ss_dssp HHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHHCTTCEEEEEESCGGGCCTTCCEEEEEETTEEEEEEEHHHHCS
T ss_pred HHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHHHCCCEEEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHHHhc
Confidence 9999999999999999999999 45566665543 36 899999998765 555 89999998888743
|
| >2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.2e-40 Score=298.66 Aligned_cols=198 Identities=15% Similarity=0.124 Sum_probs=164.1
Q ss_pred EEEEccceEEcc--c---cccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCC---
Q 021362 77 VVEARCMDEVYD--A---LAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP--- 148 (313)
Q Consensus 77 ~l~~~~l~~~y~--~---~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~--- 148 (313)
||+++||++.|+ + .. +|+|+||+|++||+++|+||||||||||+|+|+|+++ |++|+|.++|.+.
T Consensus 2 ~l~~~~l~~~y~~~~~~~~~----vl~~vsl~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~---p~~G~I~~~g~~~~~~ 74 (266)
T 2yz2_A 2 RIEVVNVSHIFHRGTPLEKK----ALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIE---PTSGDVLYDGERKKGY 74 (266)
T ss_dssp CEEEEEEEEEESTTSTTCEE----EEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSC---CSEEEEEETTEECCHH
T ss_pred EEEEEEEEEEecCCCccccc----eeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC---CCCcEEEECCEECchH
Confidence 599999999997 3 34 9999999999999999999999999999999999999 9999999999764
Q ss_pred --CCeEEEEecCCC-CCCcccCCcccChHHHHHhcCCCCCccHHHHHHHHHHhhcC----CCccCCCCCCcCCCcchhhh
Q 021362 149 --PDVATVLPMDGF-HLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ----GSVYAPSFDHGVGDPVEDDI 221 (313)
Q Consensus 149 --~~~i~~v~qd~~-~~~~~~ltv~e~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~----~~~~~~~LSgG~kqRv~ia~ 221 (313)
.+.++|++|++. .++ .+|++||+.++.... .+.....+++.++++.++.. .++++.+||||||||++||+
T Consensus 75 ~~~~~i~~v~q~~~~~~~--~~tv~enl~~~~~~~-~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGq~qRv~lAr 151 (266)
T 2yz2_A 75 EIRRNIGIAFQYPEDQFF--AERVFDEVAFAVKNF-YPDRDPVPLVKKAMEFVGLDFDSFKDRVPFFLSGGEKRRVAIAS 151 (266)
T ss_dssp HHGGGEEEECSSGGGGCC--CSSHHHHHHHTTTTT-CTTSCSHHHHHHHHHHTTCCHHHHTTCCGGGSCHHHHHHHHHHH
T ss_pred HhhhhEEEEeccchhhcC--CCcHHHHHHHHHHhc-CCHHHHHHHHHHHHHHcCcCCcccccCChhhCCHHHHHHHHHHH
Confidence 346999999852 333 379999998864332 33334567788999998865 46677899999999999999
Q ss_pred hhccCceEEEEcCCccccCh----hhHHHHHhhccc---eEEEEcChHHHHH---HHh----hcccccCCchHHHHH
Q 021362 222 LVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFDE---KWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAKW 284 (313)
Q Consensus 222 al~~~ar~Li~d~~~lllDE----~~~~~l~~l~~~---~i~vtHd~~~~~~---rv~----griv~~G~~~ev~~~ 284 (313)
|++.++++|++|+|+..||. .+++.|+++.++ .|++|||++++.. |++ |++++.|+++++...
T Consensus 152 aL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tii~vtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 228 (266)
T 2yz2_A 152 VIVHEPDILILDEPLVGLDREGKTDLLRIVEKWKTLGKTVILISHDIETVINHVDRVVVLEKGKKVFDGTRMEFLEK 228 (266)
T ss_dssp HHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCTTTGGGCSEEEEEETTEEEEEEEHHHHHHH
T ss_pred HHHcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHhcC
Confidence 99999999999999999999 556666665432 4799999998865 554 899999998888653
|
| >2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=6.5e-40 Score=293.69 Aligned_cols=193 Identities=13% Similarity=0.067 Sum_probs=159.1
Q ss_pred EEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCC------CC
Q 021362 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP------PD 150 (313)
Q Consensus 77 ~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~------~~ 150 (313)
||+++|+++.|++ +|+|+||+|++ |+++|+||||||||||+|+|+|+++ |++|+|.++|++. .+
T Consensus 1 ml~~~~l~~~y~~------~l~~isl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~---p~~G~i~~~g~~~~~~~~~~~ 70 (240)
T 2onk_A 1 MFLKVRAEKRLGN------FRLNVDFEMGR-DYCVLLGPTGAGKSVFLELIAGIVK---PDRGEVRLNGADITPLPPERR 70 (240)
T ss_dssp CCEEEEEEEEETT------EEEEEEEEECS-SEEEEECCTTSSHHHHHHHHHTSSC---CSEEEEEETTEECTTSCTTTS
T ss_pred CEEEEEEEEEeCC------EEeeeEEEECC-EEEEEECCCCCCHHHHHHHHhCCCC---CCceEEEECCEECCcCchhhC
Confidence 4789999999974 59999999999 9999999999999999999999999 9999999999653 24
Q ss_pred eEEEEecCCCCCCcccCCcccChHHHHHhcCCCCCccHHHHHHHHHHhhc--CCCccCCCCCCcCCCcchhhhhhccCce
Q 021362 151 VATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDILVGLQHK 228 (313)
Q Consensus 151 ~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~~~~~~~~~~~~l~~l~~--~~~~~~~~LSgG~kqRv~ia~al~~~ar 228 (313)
.++|++|++..++ .+|++||+.++...++. ....+++.++++.++. ..++++.+||||||||++||+|++.+++
T Consensus 71 ~i~~v~q~~~l~~--~ltv~enl~~~~~~~~~--~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~ 146 (240)
T 2onk_A 71 GIGFVPQDYALFP--HLSVYRNIAYGLRNVER--VERDRRVREMAEKLGIAHLLDRKPARLSGGERQRVALARALVIQPR 146 (240)
T ss_dssp CCBCCCSSCCCCT--TSCHHHHHHTTCTTSCH--HHHHHHHHHHHHTTTCTTTTTCCGGGSCHHHHHHHHHHHHHTTCCS
T ss_pred cEEEEcCCCccCC--CCcHHHHHHHHHHHcCC--chHHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHHcCCC
Confidence 5899999965433 58999999875432221 1124567888998884 3566778999999999999999999999
Q ss_pred EEEEcCCccccCh----hhHHHHHhhcc----ceEEEEcChHHHHH---HHh----hcccccCCchHHHH
Q 021362 229 VVIVDGNYLFLDG----GVWKDVSSMFD----EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAK 283 (313)
Q Consensus 229 ~Li~d~~~lllDE----~~~~~l~~l~~----~~i~vtHd~~~~~~---rv~----griv~~G~~~ev~~ 283 (313)
+|++|+|+..||. .+++.|+++.+ ..+++|||++++.. |++ |++++.|+++++..
T Consensus 147 lllLDEPts~LD~~~~~~~~~~l~~l~~~~g~tvi~vtHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 216 (240)
T 2onk_A 147 LLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDLIEAAMLADEVAVMLNGRIVEKGKLKELFS 216 (240)
T ss_dssp SBEEESTTSSCCHHHHHHHHHHHHHHHHHHTCCEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 9999999999999 55666666543 24799999998876 554 99999999988754
|
| >1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=4.5e-39 Score=283.41 Aligned_cols=179 Identities=15% Similarity=0.172 Sum_probs=151.2
Q ss_pred cEEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCC---CCeE
Q 021362 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP---PDVA 152 (313)
Q Consensus 76 ~~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~---~~~i 152 (313)
.+|+++|+++.|++ . +|+++||+|++||+++|+||||||||||+|+|+|+++ |++|+|.++|.+. .+.+
T Consensus 9 ~~l~~~~ls~~y~~-~----il~~vsl~i~~Ge~~~iiG~NGsGKSTLlk~l~Gl~~---p~~G~I~~~g~~~~~~~~~i 80 (214)
T 1sgw_A 9 SKLEIRDLSVGYDK-P----VLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLK---PLKGEIIYNGVPITKVKGKI 80 (214)
T ss_dssp CEEEEEEEEEESSS-E----EEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSC---CSEEEEEETTEEGGGGGGGE
T ss_pred ceEEEEEEEEEeCC-e----EEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC---CCCeEEEECCEEhhhhcCcE
Confidence 37999999999987 6 9999999999999999999999999999999999999 9999999999653 3569
Q ss_pred EEEecCCCCCCcccCCcccChHHHHHhcCCCCCccHHHHHHHHHHhhcCC-CccCCCCCCcCCCcchhhhhhccCceEEE
Q 021362 153 TVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQG-SVYAPSFDHGVGDPVEDDILVGLQHKVVI 231 (313)
Q Consensus 153 ~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~-~~~~~~LSgG~kqRv~ia~al~~~ar~Li 231 (313)
+|++|++..++ .+|+.||+.++...++. .. ..+++.++++.++... ++++.+||||||||++||+|++.++++|+
T Consensus 81 ~~v~q~~~~~~--~~tv~enl~~~~~~~~~-~~-~~~~~~~~l~~~gl~~~~~~~~~LSgGqkqrv~laraL~~~p~lll 156 (214)
T 1sgw_A 81 FFLPEEIIVPR--KISVEDYLKAVASLYGV-KV-NKNEIMDALESVEVLDLKKKLGELSQGTIRRVQLASTLLVNAEIYV 156 (214)
T ss_dssp EEECSSCCCCT--TSBHHHHHHHHHHHTTC-CC-CHHHHHHHHHHTTCCCTTSBGGGSCHHHHHHHHHHHHTTSCCSEEE
T ss_pred EEEeCCCcCCC--CCCHHHHHHHHHHhcCC-ch-HHHHHHHHHHHcCCCcCCCChhhCCHHHHHHHHHHHHHHhCCCEEE
Confidence 99999976433 48999999987655443 22 3567889999998433 66777999999999999999999999999
Q ss_pred EcCCccccCh----hhHHHHHhhcc---ceEEEEcChHHHHH
Q 021362 232 VDGNYLFLDG----GVWKDVSSMFD---EKWFIEVDLDTAMQ 266 (313)
Q Consensus 232 ~d~~~lllDE----~~~~~l~~l~~---~~i~vtHd~~~~~~ 266 (313)
+|+|+..||. .+++.|+++.+ ..+++|||++++..
T Consensus 157 LDEPts~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~~~~~ 198 (214)
T 1sgw_A 157 LDDPVVAIDEDSKHKVLKSILEILKEKGIVIISSREELSYCD 198 (214)
T ss_dssp EESTTTTSCTTTHHHHHHHHHHHHHHHSEEEEEESSCCTTSS
T ss_pred EECCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHH
Confidence 9999999999 45556665542 24799999998764
|
| >2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.8e-39 Score=288.23 Aligned_cols=191 Identities=14% Similarity=0.112 Sum_probs=157.9
Q ss_pred EEEEccceEEcc-ccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCCCCeEEEE
Q 021362 77 VVEARCMDEVYD-ALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVL 155 (313)
Q Consensus 77 ~l~~~~l~~~y~-~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~~~~i~~v 155 (313)
||+++||++.|+ +.. +|+|+||+|++|++++|+||||||||||+|+|+|+++ |++|+|.+ .+.++|+
T Consensus 4 ~l~i~~l~~~y~~~~~----vl~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~---p~~G~I~~-----~~~i~~v 71 (253)
T 2nq2_C 4 ALSVENLGFYYQAENF----LFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHR---PIQGKIEV-----YQSIGFV 71 (253)
T ss_dssp EEEEEEEEEEETTTTE----EEEEEEEEEETTCEEEEECCSSSSHHHHHHHHTTSSC---CSEEEEEE-----CSCEEEE
T ss_pred eEEEeeEEEEeCCCCe----EEEEEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCcEEEE-----eccEEEE
Confidence 799999999998 655 9999999999999999999999999999999999999 99999983 3569999
Q ss_pred ecCCCCCCcccCCcccChHHHHHhc-C---CCCCccHHHHHHHHHHhhc--CCCccCCCCCCcCCCcchhhhhhccCceE
Q 021362 156 PMDGFHLYLSQLDAMEDPKEAHARR-G---APWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDILVGLQHKV 229 (313)
Q Consensus 156 ~qd~~~~~~~~ltv~e~~~~~~~~~-~---~~~~~~~~~~~~~l~~l~~--~~~~~~~~LSgG~kqRv~ia~al~~~ar~ 229 (313)
+|++..++ .+|+.||+.++.... + .+...+.+++.++++.++. ..++++.+||||||||++||+|++.++++
T Consensus 72 ~q~~~~~~--~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~~p~l 149 (253)
T 2nq2_C 72 PQFFSSPF--AYSVLDIVLMGRSTHINTFAKPKSHDYQVAMQALDYLNLTHLAKREFTSLSGGQRQLILIARAIASECKL 149 (253)
T ss_dssp CSCCCCSS--CCBHHHHHHGGGGGGSCTTCCCCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHHTTCSE
T ss_pred cCCCccCC--CCCHHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHcCChHHhcCChhhCCHHHHHHHHHHHHHHcCCCE
Confidence 99965443 489999998864322 2 1222334667889998883 35677889999999999999999999999
Q ss_pred EEEcCCccccCh----hhHHHHHhhccc----eEEEEcChHHHHH---HHh----hcccccCCchHHH
Q 021362 230 VIVDGNYLFLDG----GVWKDVSSMFDE----KWFIEVDLDTAMQ---RVL----KRHISTGKPPDVA 282 (313)
Q Consensus 230 Li~d~~~lllDE----~~~~~l~~l~~~----~i~vtHd~~~~~~---rv~----griv~~G~~~ev~ 282 (313)
|++|+|+..||. .+++.|.++.++ .|++|||++++.. |++ |+ ++.|+++++.
T Consensus 150 llLDEPts~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~-~~~g~~~~~~ 216 (253)
T 2nq2_C 150 ILLDEPTSALDLANQDIVLSLLIDLAQSQNMTVVFTTHQPNQVVAIANKTLLLNKQN-FKFGETRNIL 216 (253)
T ss_dssp EEESSSSTTSCHHHHHHHHHHHHHHHHTSCCEEEEEESCHHHHHHHCSEEEEEETTE-EEEEEHHHHC
T ss_pred EEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEeCCe-EecCCHHHHh
Confidence 999999999999 556666666432 4799999999876 554 88 8888888774
|
| >2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.4e-39 Score=288.96 Aligned_cols=196 Identities=19% Similarity=0.065 Sum_probs=154.3
Q ss_pred ccEEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHH--hcccCCCCceeecCCCCCC---
Q 021362 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRR--INKIWPQKASSFDSQVKPP--- 149 (313)
Q Consensus 75 m~~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl--~~~~~p~~G~i~~~g~~~~--- 149 (313)
|+||+++||++.|++.. +|+|+||+|++||+++|+||||||||||+|+|+|+ ++ |++|+|.++|.+..
T Consensus 1 M~~l~~~~l~~~y~~~~----vl~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~---p~~G~I~~~g~~~~~~~ 73 (250)
T 2d2e_A 1 MSQLEIRDLWASIDGET----ILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYT---VERGEILLDGENILELS 73 (250)
T ss_dssp -CEEEEEEEEEEETTEE----EEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTCTTCE---EEEEEEEETTEECTTSC
T ss_pred CceEEEEeEEEEECCEE----EEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CCceEEEECCEECCCCC
Confidence 45799999999998766 99999999999999999999999999999999998 77 99999999997642
Q ss_pred ------CeEEEEecCCCCCCcccCCcccChHHHHHh-cCC--CCCccHHHHHHHHHHhhcC---CCccCCC-CCCcCCCc
Q 021362 150 ------DVATVLPMDGFHLYLSQLDAMEDPKEAHAR-RGA--PWTFNPLLLLNCLKNLRNQ---GSVYAPS-FDHGVGDP 216 (313)
Q Consensus 150 ------~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~-~~~--~~~~~~~~~~~~l~~l~~~---~~~~~~~-LSgG~kqR 216 (313)
..++|++|++..++ .+|+.||+.+.... .+. ......+++.++++.++.. .++++.+ ||||||||
T Consensus 74 ~~~~~~~~i~~v~q~~~~~~--~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGqkQr 151 (250)
T 2d2e_A 74 PDERARKGLFLAFQYPVEVP--GVTIANFLRLALQAKLGREVGVAEFWTKVKKALELLDWDESYLSRYLNEGFSGGEKKR 151 (250)
T ss_dssp HHHHHHTTBCCCCCCCC-CC--SCBHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHTCCGGGGGSBTTCC----HHHH
T ss_pred HHHHHhCcEEEeccCCcccc--CCCHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCCHHHHHH
Confidence 23789999965443 58999999886532 222 1112245678888988852 4566778 99999999
Q ss_pred chhhhhhccCceEEEEcCCccccCh----hhHHHHHhhccc---eEEEEcChHHHHH----HHh----hcccccCCch
Q 021362 217 VEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFDE---KWFIEVDLDTAMQ----RVL----KRHISTGKPP 279 (313)
Q Consensus 217 v~ia~al~~~ar~Li~d~~~lllDE----~~~~~l~~l~~~---~i~vtHd~~~~~~----rv~----griv~~G~~~ 279 (313)
++||+|++.++++|++|+|+..||. .+++.|+++.++ .|++|||++++.. |++ |++++.|+++
T Consensus 152 v~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~~~~~~~~d~v~~l~~G~i~~~g~~~ 229 (250)
T 2d2e_A 152 NEILQLLVLEPTYAVLDETDSGLDIDALKVVARGVNAMRGPNFGALVITHYQRILNYIQPDKVHVMMDGRVVATGGPE 229 (250)
T ss_dssp HHHHHHHHHCCSEEEEECGGGTTCHHHHHHHHHHHHHHCSTTCEEEEECSSSGGGGTSCCSEEEEEETTEEEEEESHH
T ss_pred HHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhcCCEEEEEECCEEEEEeCHH
Confidence 9999999999999999999999999 566666666443 4799999998753 444 8999888876
|
| >2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-38 Score=288.30 Aligned_cols=199 Identities=17% Similarity=0.042 Sum_probs=158.5
Q ss_pred ccEEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHH--hcccCCCCceeecCCCCCC---
Q 021362 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRR--INKIWPQKASSFDSQVKPP--- 149 (313)
Q Consensus 75 m~~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl--~~~~~p~~G~i~~~g~~~~--- 149 (313)
+++|+++||++.|++.. +|+|+||+|++||+++|+||||||||||+|+|+|+ ++ |++|+|.++|++..
T Consensus 18 ~~~l~~~~l~~~y~~~~----vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~Gl~~~~---p~~G~I~~~g~~i~~~~ 90 (267)
T 2zu0_C 18 SHMLSIKDLHVSVEDKA----ILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYE---VTGGTVEFKGKDLLALS 90 (267)
T ss_dssp --CEEEEEEEEEETTEE----EEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTCTTCE---EEEEEEEETTEEGGGSC
T ss_pred CceEEEEeEEEEECCEE----EEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CCCeEEEECCEECCcCC
Confidence 34799999999998766 99999999999999999999999999999999999 46 89999999997532
Q ss_pred ------CeEEEEecCCCCCCcccCCcccChHHHHH-h---cCCC---CCccHHHHHHHHHHhhcC---CCccCC-CCCCc
Q 021362 150 ------DVATVLPMDGFHLYLSQLDAMEDPKEAHA-R---RGAP---WTFNPLLLLNCLKNLRNQ---GSVYAP-SFDHG 212 (313)
Q Consensus 150 ------~~i~~v~qd~~~~~~~~ltv~e~~~~~~~-~---~~~~---~~~~~~~~~~~l~~l~~~---~~~~~~-~LSgG 212 (313)
..++|++|++..++ .+|+.+|+.+... . .+.+ .....+++.++++.++.. .++++. +||||
T Consensus 91 ~~~~~~~~i~~v~Q~~~l~~--~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgG 168 (267)
T 2zu0_C 91 PEDRAGEGIFMAFQYPVEIP--GVSNQFFLQTALNAVRSYRGQETLDRFDFQDLMEEKIALLKMPEDLLTRSVNVGFSGG 168 (267)
T ss_dssp HHHHHHHTEEEECSSCCCCT--TCBHHHHHHHHHHHHHHGGGCCCCCHHHHHHHHHHHHHHTTCCTTTTTSBTTTTCCHH
T ss_pred HHHHhhCCEEEEccCccccc--cccHHHHHHHHHHhhhhhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCCHH
Confidence 13899999965443 4899999987542 1 2221 112235678889988853 355665 59999
Q ss_pred CCCcchhhhhhccCceEEEEcCCccccCh----hhHHHHHhhccc---eEEEEcChHHHHH----HHh----hcccccCC
Q 021362 213 VGDPVEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFDE---KWFIEVDLDTAMQ----RVL----KRHISTGK 277 (313)
Q Consensus 213 ~kqRv~ia~al~~~ar~Li~d~~~lllDE----~~~~~l~~l~~~---~i~vtHd~~~~~~----rv~----griv~~G~ 277 (313)
||||++||+|++.++++|++|+|+..||. .+++.|+++.++ .+++|||++++.. |++ |++++.|+
T Consensus 169 q~QRv~iAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tviivtHd~~~~~~~~~d~v~~l~~G~i~~~g~ 248 (267)
T 2zu0_C 169 EKKRNDILQMAVLEPELCILDESDSGLDIDALKVVADGVNSLRDGKRSFIIVTHYQRILDYIKPDYVHVLYQGRIVKSGD 248 (267)
T ss_dssp HHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHTTCCSSCEEEEECSSGGGGGTSCCSEEEEEETTEEEEEEC
T ss_pred HHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeeCHHHHHhhcCCEEEEEECCEEEEEcC
Confidence 99999999999999999999999999999 566666666443 4699999998743 444 89999999
Q ss_pred chHHH
Q 021362 278 PPDVA 282 (313)
Q Consensus 278 ~~ev~ 282 (313)
++++.
T Consensus 249 ~~~~~ 253 (267)
T 2zu0_C 249 FTLVK 253 (267)
T ss_dssp TTHHH
T ss_pred HHHHh
Confidence 88764
|
| >1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=4.1e-38 Score=282.56 Aligned_cols=192 Identities=17% Similarity=0.155 Sum_probs=156.3
Q ss_pred EEEEccceEEc-cccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCC-------
Q 021362 77 VVEARCMDEVY-DALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP------- 148 (313)
Q Consensus 77 ~l~~~~l~~~y-~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~------- 148 (313)
||+++|+++.| ++.. +|+++||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|.+.
T Consensus 1 ml~~~~l~~~y~~~~~----vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---p~~G~i~~~g~~~~~~~~~~ 73 (243)
T 1mv5_A 1 MLSARHVDFAYDDSEQ----ILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQ---PTAGEITIDGQPIDNISLEN 73 (243)
T ss_dssp CEEEEEEEECSSSSSC----SEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSC---CSBSCEEETTEESTTTSCSC
T ss_pred CEEEEEEEEEeCCCCc----eEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC---CCCcEEEECCEEhhhCCHHH
Confidence 48999999999 4555 9999999999999999999999999999999999999 9999999998542
Q ss_pred -CCeEEEEecCCCCCCcccCCcccChHHHHHhcCCCCCccHHHHHHHHHHhhcC--C-----------CccCCCCCCcCC
Q 021362 149 -PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--G-----------SVYAPSFDHGVG 214 (313)
Q Consensus 149 -~~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~--~-----------~~~~~~LSgG~k 214 (313)
.+.++|++|++.. +. .|++||+.++.. .....+++.++++.++.. . +.++.+||||||
T Consensus 74 ~~~~i~~v~q~~~l-~~--~tv~enl~~~~~-----~~~~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~ 145 (243)
T 1mv5_A 74 WRSQIGFVSQDSAI-MA--GTIRENLTYGLE-----GDYTDEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQR 145 (243)
T ss_dssp CTTTCCEECCSSCC-CC--EEHHHHTTSCTT-----SCSCHHHHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCHHHH
T ss_pred HHhhEEEEcCCCcc-cc--ccHHHHHhhhcc-----CCCCHHHHHHHHHHhChHHHHHhCccchhchhccCcCcCCHHHH
Confidence 3458999999654 33 499999976421 112345677778877632 1 124569999999
Q ss_pred CcchhhhhhccCceEEEEcCCccccCh----hhHHHHHhhcc--ceEEEEcChHHHHH--HHh----hcccccCCchHHH
Q 021362 215 DPVEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFD--EKWFIEVDLDTAMQ--RVL----KRHISTGKPPDVA 282 (313)
Q Consensus 215 qRv~ia~al~~~ar~Li~d~~~lllDE----~~~~~l~~l~~--~~i~vtHd~~~~~~--rv~----griv~~G~~~ev~ 282 (313)
||++||+|++.++++|++|+|+..||. .+++.|+++.. ..+++|||++.+.. |++ |++++.|+++++.
T Consensus 146 qrv~lAral~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 225 (243)
T 1mv5_A 146 QRLAIARAFLRNPKILMLDEATASLDSESESMVQKALDSLMKGRTTLVIAHRLSTIVDADKIYFIEKGQITGSGKHNELV 225 (243)
T ss_dssp HHHHHHHHHHHCCSEEEEECCSCSSCSSSCCHHHHHHHHHHTTSEEEEECCSHHHHHHCSEEEEEETTEECCCSCHHHHH
T ss_pred HHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHhcCCCEEEEEeCChHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 999999999999999999999999999 66777776643 24799999998765 554 8999999998886
Q ss_pred H
Q 021362 283 K 283 (313)
Q Consensus 283 ~ 283 (313)
.
T Consensus 226 ~ 226 (243)
T 1mv5_A 226 A 226 (243)
T ss_dssp H
T ss_pred h
Confidence 5
|
| >2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-38 Score=289.99 Aligned_cols=196 Identities=15% Similarity=0.115 Sum_probs=156.0
Q ss_pred EEEEccceEEccc---cccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCCC----
Q 021362 77 VVEARCMDEVYDA---LAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPP---- 149 (313)
Q Consensus 77 ~l~~~~l~~~y~~---~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~~---- 149 (313)
+|+++||++.|++ .. +|+++||+|++||+++|+||||||||||+|+|+|+++ |++|+|.++|.+..
T Consensus 16 ~l~~~~l~~~y~~~~~~~----vl~~vsl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~---p~~G~I~~~g~~i~~~~~ 88 (271)
T 2ixe_A 16 LVKFQDVSFAYPNHPNVQ----VLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQ---PTGGKVLLDGEPLVQYDH 88 (271)
T ss_dssp CEEEEEEEECCTTCTTSC----CEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSC---CSEEEEEETTEEGGGBCH
T ss_pred eEEEEEEEEEeCCCCCce----eeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCC---CCCCEEEECCEEcccCCH
Confidence 6999999999976 44 9999999999999999999999999999999999999 99999999997642
Q ss_pred ----CeEEEEecCCCCCCcccCCcccChHHHHHhcCCCC-Ccc-----HHHHHHHHHHh--h--cCCCccCCCCCCcCCC
Q 021362 150 ----DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPW-TFN-----PLLLLNCLKNL--R--NQGSVYAPSFDHGVGD 215 (313)
Q Consensus 150 ----~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~~-~~~-----~~~~~~~l~~l--~--~~~~~~~~~LSgG~kq 215 (313)
+.++|++|++.. +. .|++||+.++... ... ... ...+.++++.+ + ...++++.+|||||||
T Consensus 89 ~~~~~~i~~v~Q~~~l-~~--~tv~enl~~~~~~--~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgGq~Q 163 (271)
T 2ixe_A 89 HYLHTQVAAVGQEPLL-FG--RSFRENIAYGLTR--TPTMEEITAVAMESGAHDFISGFPQGYDTEVGETGNQLSGGQRQ 163 (271)
T ss_dssp HHHHHHEEEECSSCCC-CS--SBHHHHHHTTCSS--CCCHHHHHHHHHHHTCHHHHHHSTTGGGSBCCGGGTTSCHHHHH
T ss_pred HHHhccEEEEecCCcc-cc--ccHHHHHhhhccc--CChHHHHHHHHHHHhHHHHHHhhhcchhhhhcCCcCCCCHHHHH
Confidence 359999999654 33 5999999875321 111 000 11123455555 3 2346677899999999
Q ss_pred cchhhhhhccCceEEEEcCCccccCh----hhHHHHHhhcc----ceEEEEcChHHHHH--HHh----hcccccCCchHH
Q 021362 216 PVEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFD----EKWFIEVDLDTAMQ--RVL----KRHISTGKPPDV 281 (313)
Q Consensus 216 Rv~ia~al~~~ar~Li~d~~~lllDE----~~~~~l~~l~~----~~i~vtHd~~~~~~--rv~----griv~~G~~~ev 281 (313)
|++||+|++.++++|++|+|+..||. .+++.|+++.. .+|+||||++++.. |++ |++++.|+++++
T Consensus 164 Rv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~g~tviivtHd~~~~~~~d~v~~l~~G~i~~~g~~~~l 243 (271)
T 2ixe_A 164 AVALARALIRKPRLLILDNATSALDAGNQLRVQRLLYESPEWASRTVLLITQQLSLAERAHHILFLKEGSVCEQGTHLQL 243 (271)
T ss_dssp HHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHCTTTTTSEEEEECSCHHHHTTCSEEEEEETTEEEEEECHHHH
T ss_pred HHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHHHHHhCCEEEEEECCEEEEECCHHHH
Confidence 99999999999999999999999999 56677777643 24799999998765 554 899999999888
Q ss_pred HHH
Q 021362 282 AKW 284 (313)
Q Consensus 282 ~~~ 284 (313)
...
T Consensus 244 ~~~ 246 (271)
T 2ixe_A 244 MER 246 (271)
T ss_dssp HHH
T ss_pred HhC
Confidence 643
|
| >2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.4e-38 Score=281.55 Aligned_cols=191 Identities=16% Similarity=0.187 Sum_probs=153.2
Q ss_pred EEEEccceEEc--cccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCCC-----
Q 021362 77 VVEARCMDEVY--DALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPP----- 149 (313)
Q Consensus 77 ~l~~~~l~~~y--~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~~----- 149 (313)
-|+++||++.| ++.. +|+++||+|++||+++|+||||||||||+|+|+|+++ |++|+|.++|.+..
T Consensus 7 ~~~~~~l~~~y~~~~~~----vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---p~~G~I~i~g~~~~~~~~~ 79 (247)
T 2ff7_A 7 DITFRNIRFRYKPDSPV----ILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYI---PENGQVLIDGHDLALADPN 79 (247)
T ss_dssp EEEEEEEEEESSTTSCE----EEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSC---CSEEEEEETTEETTTSCHH
T ss_pred ceeEEEEEEEeCCCCcc----eeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC---CCCcEEEECCEEhhhCCHH
Confidence 48999999999 3444 9999999999999999999999999999999999999 99999999997643
Q ss_pred ---CeEEEEecCCCCCCcccCCcccChHHHHHhcCCCCCccHHHHHHHHHHhhc-------------CCCccCCCCCCcC
Q 021362 150 ---DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN-------------QGSVYAPSFDHGV 213 (313)
Q Consensus 150 ---~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~~~~~~~~~~~~l~~l~~-------------~~~~~~~~LSgG~ 213 (313)
+.++|++|++..+ . .|++||+.++. + ....+++.++++.++. ..+.++.+|||||
T Consensus 80 ~~~~~i~~v~Q~~~l~-~--~tv~enl~~~~-----~-~~~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq 150 (247)
T 2ff7_A 80 WLRRQVGVVLQDNVLL-N--RSIIDNISLAN-----P-GMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQ 150 (247)
T ss_dssp HHHHHEEEECSSCCCT-T--SBHHHHHTTTC-----T-TCCHHHHHHHHHHHTCHHHHHTSTTGGGCBCSTTTTCCCHHH
T ss_pred HHHhcEEEEeCCCccc-c--ccHHHHHhccC-----C-CCCHHHHHHHHHHhChHHHHHhCcchhhhhhhCCCCCCCHHH
Confidence 2499999996543 3 59999997641 1 1234455666665552 1233557999999
Q ss_pred CCcchhhhhhccCceEEEEcCCccccCh----hhHHHHHhhcc--ceEEEEcChHHHHH--HHh----hcccccCCchHH
Q 021362 214 GDPVEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFD--EKWFIEVDLDTAMQ--RVL----KRHISTGKPPDV 281 (313)
Q Consensus 214 kqRv~ia~al~~~ar~Li~d~~~lllDE----~~~~~l~~l~~--~~i~vtHd~~~~~~--rv~----griv~~G~~~ev 281 (313)
|||++||+|++.++++|++|+|+..||. .+++.|+++.. ..|++|||++.+.. |++ |++++.|+++++
T Consensus 151 ~qRv~iAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~g~tviivtH~~~~~~~~d~v~~l~~G~i~~~g~~~~l 230 (247)
T 2ff7_A 151 RQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKEL 230 (247)
T ss_dssp HHHHHHHHHHTTCCSEEEECCCCSCCCHHHHHHHHHHHHHHHTTSEEEEECSSGGGGTTSSEEEEEETTEEEEEECHHHH
T ss_pred HHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEeCCHHHHHhCCEEEEEECCEEEEECCHHHH
Confidence 9999999999999999999999999999 45556655532 24799999998754 554 899999998887
Q ss_pred HH
Q 021362 282 AK 283 (313)
Q Consensus 282 ~~ 283 (313)
..
T Consensus 231 ~~ 232 (247)
T 2ff7_A 231 LS 232 (247)
T ss_dssp HT
T ss_pred Hh
Confidence 53
|
| >3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=8.9e-38 Score=288.82 Aligned_cols=192 Identities=14% Similarity=0.102 Sum_probs=155.3
Q ss_pred EEEEccceEEccc-cccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCCC------
Q 021362 77 VVEARCMDEVYDA-LAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPP------ 149 (313)
Q Consensus 77 ~l~~~~l~~~y~~-~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~~------ 149 (313)
.|+++||++.|++ .. +|+|+||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|++..
T Consensus 53 ~i~~~~vs~~y~~~~~----vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~---p~~G~I~i~G~~i~~~~~~~ 125 (306)
T 3nh6_A 53 RIEFENVHFSYADGRE----TLQDVSFTVMPGQTLALVGPSGAGKSTILRLLFRFYD---ISSGCIRIDGQDISQVTQAS 125 (306)
T ss_dssp CEEEEEEEEESSTTCE----EEEEEEEEECTTCEEEEESSSCHHHHHHHHHHTTSSC---CSEEEEEETTEETTSBCHHH
T ss_pred eEEEEEEEEEcCCCCc----eeeeeeEEEcCCCEEEEECCCCchHHHHHHHHHcCCC---CCCcEEEECCEEcccCCHHH
Confidence 5999999999964 44 9999999999999999999999999999999999999 99999999998753
Q ss_pred --CeEEEEecCCCCCCcccCCcccChHHHHHhcCCCCCccHHHHHHHHHHhhc-------------CCCccCCCCCCcCC
Q 021362 150 --DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN-------------QGSVYAPSFDHGVG 214 (313)
Q Consensus 150 --~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~~~~~~~~~~~~l~~l~~-------------~~~~~~~~LSgG~k 214 (313)
+.++||+|+++.+ . .|++||+.++... ...+++.++++.++. .......+||||||
T Consensus 126 ~r~~i~~v~Q~~~lf-~--~Tv~eNi~~~~~~------~~~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSGGqr 196 (306)
T 3nh6_A 126 LRSHIGVVPQDTVLF-N--DTIADNIRYGRVT------AGNDEVEAAAQAAGIHDAIMAFPEGYRTQVGERGLKLSGGEK 196 (306)
T ss_dssp HHHTEEEECSSCCCC-S--EEHHHHHHTTSTT------CCHHHHHHHHHHHTCHHHHHHSTTGGGCEESTTSBCCCHHHH
T ss_pred HhcceEEEecCCccC-c--ccHHHHHHhhccc------CCHHHHHHHHHHhCcHHHHHhccchhhhHhcCCcCCCCHHHH
Confidence 2599999997644 3 5999999875321 123344444444331 11234569999999
Q ss_pred CcchhhhhhccCceEEEEcCCccccCh----hhHHHHHhhccc--eEEEEcChHHHHH--HHh----hcccccCCchHHH
Q 021362 215 DPVEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFDE--KWFIEVDLDTAMQ--RVL----KRHISTGKPPDVA 282 (313)
Q Consensus 215 qRv~ia~al~~~ar~Li~d~~~lllDE----~~~~~l~~l~~~--~i~vtHd~~~~~~--rv~----griv~~G~~~ev~ 282 (313)
||++||+|++.++++|++|+++..||. .+++.|.++... +|+||||++.+.. |++ |++++.|+++++.
T Consensus 197 QRvaiARAL~~~p~iLlLDEPts~LD~~~~~~i~~~l~~l~~~~Tvi~itH~l~~~~~aD~i~vl~~G~iv~~G~~~el~ 276 (306)
T 3nh6_A 197 QRVAIARTILKAPGIILLDEATSALDTSNERAIQASLAKVCANRTTIVVAHRLSTVVNADQILVIKDGCIVERGRHEALL 276 (306)
T ss_dssp HHHHHHHHHHHCCSEEEEECCSSCCCHHHHHHHHHHHHHHHTTSEEEEECCSHHHHHTCSEEEEEETTEEEEEECHHHHH
T ss_pred HHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEEcChHHHHcCCEEEEEECCEEEEECCHHHHH
Confidence 999999999999999999999999999 455556655433 4799999999977 655 9999999999987
Q ss_pred HH
Q 021362 283 KW 284 (313)
Q Consensus 283 ~~ 284 (313)
..
T Consensus 277 ~~ 278 (306)
T 3nh6_A 277 SR 278 (306)
T ss_dssp HH
T ss_pred hc
Confidence 54
|
| >2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-37 Score=280.16 Aligned_cols=191 Identities=15% Similarity=0.117 Sum_probs=159.9
Q ss_pred EEEEccceEEccc----cccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCC----
Q 021362 77 VVEARCMDEVYDA----LAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP---- 148 (313)
Q Consensus 77 ~l~~~~l~~~y~~----~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~---- 148 (313)
||+++|+++.|++ .. +|+++||+|+ |++++|+||||||||||+|+|+|++ |++|+|.++|.+.
T Consensus 1 ml~~~~l~~~y~~~~~~~~----il~~vsl~i~-Ge~~~i~G~NGsGKSTLlk~l~Gl~----p~~G~I~~~g~~~~~~~ 71 (263)
T 2pjz_A 1 MIQLKNVGITLSGKGYERF----SLENINLEVN-GEKVIILGPNGSGKTTLLRAISGLL----PYSGNIFINGMEVRKIR 71 (263)
T ss_dssp CEEEEEEEEEEEEETTEEE----EEEEEEEEEC-SSEEEEECCTTSSHHHHHHHHTTSS----CCEEEEEETTEEGGGCS
T ss_pred CEEEEEEEEEeCCCCccce----eEEeeeEEEC-CEEEEEECCCCCCHHHHHHHHhCCC----CCCcEEEECCEECcchH
Confidence 4899999999986 45 9999999999 9999999999999999999999997 8999999998542
Q ss_pred -CCeEE-EEecCCCCCCcccCCcccChHHHHHhcCCCCCccHHHHHHHHHHhhcC---CCccCCCCCCcCCCcchhhhhh
Q 021362 149 -PDVAT-VLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ---GSVYAPSFDHGVGDPVEDDILV 223 (313)
Q Consensus 149 -~~~i~-~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~---~~~~~~~LSgG~kqRv~ia~al 223 (313)
.+.++ |++|++.. .+|+.||+.+....+ ....+++.++++.++.. .++++.+||||||||++||+|+
T Consensus 72 ~~~~i~~~v~Q~~~l----~~tv~enl~~~~~~~----~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqRv~lAraL 143 (263)
T 2pjz_A 72 NYIRYSTNLPEAYEI----GVTVNDIVYLYEELK----GLDRDLFLEMLKALKLGEEILRRKLYKLSAGQSVLVRTSLAL 143 (263)
T ss_dssp CCTTEEECCGGGSCT----TSBHHHHHHHHHHHT----CCCHHHHHHHHHHTTCCGGGGGSBGGGSCHHHHHHHHHHHHH
T ss_pred HhhheEEEeCCCCcc----CCcHHHHHHHhhhhc----chHHHHHHHHHHHcCCChhHhcCChhhCCHHHHHHHHHHHHH
Confidence 34689 99999654 389999999875433 23456788899998854 4567779999999999999999
Q ss_pred ccCceEEEEcCCccccCh----hhHHHHHhhccceEEEEcChHHHHH----HHh----hcccccCCchHHHHH
Q 021362 224 GLQHKVVIVDGNYLFLDG----GVWKDVSSMFDEKWFIEVDLDTAMQ----RVL----KRHISTGKPPDVAKW 284 (313)
Q Consensus 224 ~~~ar~Li~d~~~lllDE----~~~~~l~~l~~~~i~vtHd~~~~~~----rv~----griv~~G~~~ev~~~ 284 (313)
+.++++|++|+|+..||. .+++.|+++.+..+++|||++++.. |++ |++++.|+++++...
T Consensus 144 ~~~p~lllLDEPts~LD~~~~~~l~~~L~~~~~tviivtHd~~~~~~~~d~~i~~l~~G~i~~~g~~~~l~~~ 216 (263)
T 2pjz_A 144 ASQPEIVGLDEPFENVDAARRHVISRYIKEYGKEGILVTHELDMLNLYKEYKAYFLVGNRLQGPISVSELLES 216 (263)
T ss_dssp HTCCSEEEEECTTTTCCHHHHHHHHHHHHHSCSEEEEEESCGGGGGGCTTSEEEEEETTEEEEEEEHHHHHTE
T ss_pred HhCCCEEEEECCccccCHHHHHHHHHHHHHhcCcEEEEEcCHHHHHHhcCceEEEEECCEEEEecCHHHHHhh
Confidence 999999999999999999 5566666665545799999998754 343 899999998888643
|
| >2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-37 Score=279.94 Aligned_cols=188 Identities=18% Similarity=0.144 Sum_probs=156.2
Q ss_pred EEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCCC-------
Q 021362 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPP------- 149 (313)
Q Consensus 77 ~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~~------- 149 (313)
||+++||++. . +|+|+||+|++||+++|+||||||||||+|+|+|+++ |+ |+|.++|.+..
T Consensus 4 ~l~~~~l~~~----~----vl~~vsl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~---p~-G~i~~~g~~~~~~~~~~~ 71 (249)
T 2qi9_C 4 VMQLQDVAES----T----RLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTS---GK-GSIQFAGQPLEAWSATKL 71 (249)
T ss_dssp EEEEEEEEET----T----TEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSC---CE-EEEEETTEEGGGSCHHHH
T ss_pred EEEEEceEEE----E----EEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC---CC-eEEEECCEECCcCCHHHH
Confidence 6999999987 4 9999999999999999999999999999999999999 99 99999997532
Q ss_pred -CeEEEEecCCCCCCcccCCcccChHHHHHhcCCCCCccHHHHHHHHHHhhc--CCCccCCCCCCcCCCcchhhhhhccC
Q 021362 150 -DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDILVGLQ 226 (313)
Q Consensus 150 -~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~~~~~~~~~~~~l~~l~~--~~~~~~~~LSgG~kqRv~ia~al~~~ 226 (313)
+.++|++|++..++ .+|++||+.++. ..+. ..+++.++++.++. ..++++.+||||||||++||+|++.+
T Consensus 72 ~~~i~~v~q~~~~~~--~~tv~e~l~~~~-~~~~----~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~~ 144 (249)
T 2qi9_C 72 ALHRAYLSQQQTPPF--ATPVWHYLTLHQ-HDKT----RTELLNDVAGALALDDKLGRSTNQLSGGEWQRVRLAAVVLQI 144 (249)
T ss_dssp HHHEEEECSCCCCCT--TCBHHHHHHTTC-SSTT----CHHHHHHHHHHTTCGGGTTSBGGGCCHHHHHHHHHHHHHHHH
T ss_pred hceEEEECCCCccCC--CCcHHHHHHHhh-ccCC----cHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHHcC
Confidence 34999999965433 489999998642 1111 25678889998883 45667789999999999999999999
Q ss_pred ce-------EEEEcCCccccCh----hhHHHHHhhccc---eEEEEcChHHHHH---HHh----hcccccCCchHHHH
Q 021362 227 HK-------VVIVDGNYLFLDG----GVWKDVSSMFDE---KWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAK 283 (313)
Q Consensus 227 ar-------~Li~d~~~lllDE----~~~~~l~~l~~~---~i~vtHd~~~~~~---rv~----griv~~G~~~ev~~ 283 (313)
++ +|++|+|+..||. .+++.|+++.++ .+++|||++++.. |++ |++++.|+++++..
T Consensus 145 p~~~~~~~~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 222 (249)
T 2qi9_C 145 TPQANPAGQLLLLDEPMNSLDVAQQSALDKILSALSQQGLAIVMSSHDLNHTLRHAHRAWLLKGGKMLASGRREEVLT 222 (249)
T ss_dssp CTTTCTTCCEEEESSTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEETTEEEEEEEHHHHSC
T ss_pred CCcCCCCCeEEEEECCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 99 9999999999999 566666666432 4799999999865 554 89999998888753
|
| >2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-37 Score=278.82 Aligned_cols=191 Identities=11% Similarity=0.096 Sum_probs=148.5
Q ss_pred ccEEEEccceEEccc--cccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCCCCeE
Q 021362 75 IPVVEARCMDEVYDA--LAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVA 152 (313)
Q Consensus 75 m~~l~~~~l~~~y~~--~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~~~~i 152 (313)
|.+|+++|+++.|++ .. +|+++||+|++|++++|+||||||||||+|+|+|+++ |++|+|.++| .+
T Consensus 1 M~~l~~~~l~~~y~~~~~~----vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---p~~G~I~~~g-----~i 68 (237)
T 2cbz_A 1 MNSITVRNATFTWARSDPP----TLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMD---KVEGHVAIKG-----SV 68 (237)
T ss_dssp -CCEEEEEEEEESCTTSCC----SEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTCSE---EEEEEEEECS-----CE
T ss_pred CCeEEEEEEEEEeCCCCCc----eeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCC---CCCceEEECC-----EE
Confidence 446999999999973 44 9999999999999999999999999999999999999 9999999998 38
Q ss_pred EEEecCCCCCCcccCCcccChHHHHHhcCCCCCccHHHHHHH---HHHhhcC-------CCccCCCCCCcCCCcchhhhh
Q 021362 153 TVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNC---LKNLRNQ-------GSVYAPSFDHGVGDPVEDDIL 222 (313)
Q Consensus 153 ~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~~~~~~~~~~~~---l~~l~~~-------~~~~~~~LSgG~kqRv~ia~a 222 (313)
+|++|++. ++ .+|++||+.++.. .. ....+++.+. ++.++.. .++++.+||||||||++||+|
T Consensus 69 ~~v~Q~~~-~~--~~tv~enl~~~~~---~~-~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqRv~lAra 141 (237)
T 2cbz_A 69 AYVPQQAW-IQ--NDSLRENILFGCQ---LE-EPYYRSVIQACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARA 141 (237)
T ss_dssp EEECSSCC-CC--SEEHHHHHHTTSC---CC-TTHHHHHHHHTTCHHHHTTSTTGGGSEESTTSBCCCHHHHHHHHHHHH
T ss_pred EEEcCCCc-CC--CcCHHHHhhCccc---cC-HHHHHHHHHHHhhHHHHHhccccccccccCCCCCCCHHHHHHHHHHHH
Confidence 99999964 33 4799999977421 11 1122222222 2223211 245677999999999999999
Q ss_pred hccCceEEEEcCCccccChhhHHHHHhhc-------c--ceEEEEcChHHHHH--HHh----hcccccCCchHHHHH
Q 021362 223 VGLQHKVVIVDGNYLFLDGGVWKDVSSMF-------D--EKWFIEVDLDTAMQ--RVL----KRHISTGKPPDVAKW 284 (313)
Q Consensus 223 l~~~ar~Li~d~~~lllDE~~~~~l~~l~-------~--~~i~vtHd~~~~~~--rv~----griv~~G~~~ev~~~ 284 (313)
++.++++|++|+|+..||....+.+.++. . ..|++|||++.+.. |++ |++++.|+++++...
T Consensus 142 L~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~~~~tviivtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 218 (237)
T 2cbz_A 142 VYSNADIYLFDDPLSAVDAHVGKHIFENVIGPKGMLKNKTRILVTHSMSYLPQVDVIIVMSGGKISEMGSYQELLAR 218 (237)
T ss_dssp HHHCCSEEEEESTTTTSCHHHHHHHHHHTTSTTSTTTTSEEEEECSCSTTGGGSSEEEEEETTEEEEEECHHHHHHH
T ss_pred HhcCCCEEEEeCcccccCHHHHHHHHHHHHHHHhhcCCCEEEEEecChHHHHhCCEEEEEeCCEEEEeCCHHHHhhc
Confidence 99999999999999999995555444433 1 24699999988654 544 899999999887543
|
| >2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A | Back alignment and structure |
|---|
Probab=100.00 E-value=7.7e-36 Score=265.46 Aligned_cols=185 Identities=11% Similarity=0.129 Sum_probs=146.3
Q ss_pred EEEEccceEEcc--ccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCCCCeEEE
Q 021362 77 VVEARCMDEVYD--ALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATV 154 (313)
Q Consensus 77 ~l~~~~l~~~y~--~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~~~~i~~ 154 (313)
+|+++|+++.|+ +.. +|+++||+|++|++++|+||||||||||+|+|+|+++ |++|+|.++| .++|
T Consensus 6 ~l~~~~l~~~y~~~~~~----il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---p~~G~i~~~g-----~i~~ 73 (229)
T 2pze_A 6 EVVMENVTAFWEEGGTP----VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELE---PSEGKIKHSG-----RISF 73 (229)
T ss_dssp EEEEEEEEECSSTTSCC----SEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSC---CSEEEEEECS-----CEEE
T ss_pred eEEEEEEEEEeCCCCce----eeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCc---CCccEEEECC-----EEEE
Confidence 799999999995 344 9999999999999999999999999999999999999 9999999988 4899
Q ss_pred EecCCCCCCcccCCcccChHHHHHhcCCCCCccHHHHHHHHHHhh---------cC----CCccCCCCCCcCCCcchhhh
Q 021362 155 LPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLR---------NQ----GSVYAPSFDHGVGDPVEDDI 221 (313)
Q Consensus 155 v~qd~~~~~~~~ltv~e~~~~~~~~~~~~~~~~~~~~~~~l~~l~---------~~----~~~~~~~LSgG~kqRv~ia~ 221 (313)
++|++.. ++ .|++||+.++.. . ...+..+.++.++ .. .+....+||||||||++||+
T Consensus 74 v~q~~~~-~~--~tv~enl~~~~~-----~--~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqrv~lAr 143 (229)
T 2pze_A 74 CSQFSWI-MP--GTIKENIIFGVS-----Y--DEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLAR 143 (229)
T ss_dssp ECSSCCC-CS--BCHHHHHHTTSC-----C--CHHHHHHHHHHTTCHHHHTTSTTGGGSCBCTTCTTSCHHHHHHHHHHH
T ss_pred EecCCcc-cC--CCHHHHhhccCC-----c--ChHHHHHHHHHhCcHHHHHhCcccccccccCCCCcCCHHHHHHHHHHH
Confidence 9999654 33 499999976421 1 1122223333222 10 12235699999999999999
Q ss_pred hhccCceEEEEcCCccccChhhHHHHHhh-cc------ceEEEEcChHHHHH--HHh----hcccccCCchHHHH
Q 021362 222 LVGLQHKVVIVDGNYLFLDGGVWKDVSSM-FD------EKWFIEVDLDTAMQ--RVL----KRHISTGKPPDVAK 283 (313)
Q Consensus 222 al~~~ar~Li~d~~~lllDE~~~~~l~~l-~~------~~i~vtHd~~~~~~--rv~----griv~~G~~~ev~~ 283 (313)
|++.++++|++|+|+..||....+.+.++ .. ..+++|||++++.. |++ |++++.|+++++..
T Consensus 144 al~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 218 (229)
T 2pze_A 144 AVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLKKADKILILHEGSSYFYGTFSELQN 218 (229)
T ss_dssp HHHSCCSEEEEESTTTTSCHHHHHHHHHHCCCCCTTTSEEEEECCCHHHHHHCSEEEEEETTEEEEEECHHHHHT
T ss_pred HHhcCCCEEEEECcccCCCHHHHHHHHHHHHHHhhCCCEEEEEcCChHHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 99999999999999999999766666653 21 14699999998765 554 89999999888753
|
| >2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.2e-37 Score=278.64 Aligned_cols=194 Identities=15% Similarity=0.080 Sum_probs=152.5
Q ss_pred cEEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCC-------
Q 021362 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP------- 148 (313)
Q Consensus 76 ~~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~------- 148 (313)
.+|+++||++.|++.. ...+|+|+||+|++|++++|+||||||||||+|+|+|+++ | +|+|.++|.+.
T Consensus 16 ~~l~i~~l~~~y~~~~-~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---~-~G~I~i~g~~i~~~~~~~ 90 (260)
T 2ghi_A 16 VNIEFSDVNFSYPKQT-NHRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYD---A-EGDIKIGGKNVNKYNRNS 90 (260)
T ss_dssp CCEEEEEEEECCTTCC-SSCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSC---C-EEEEEETTEEGGGBCHHH
T ss_pred CeEEEEEEEEEeCCCC-cCceeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhccCC---C-CeEEEECCEEhhhcCHHH
Confidence 3699999999997531 1238999999999999999999999999999999999997 7 89999999653
Q ss_pred -CCeEEEEecCCCCCCcccCCcccChHHHHHhcCCCCCccHHHHHHHHHHhhc------C-------CCccCCCCCCcCC
Q 021362 149 -PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN------Q-------GSVYAPSFDHGVG 214 (313)
Q Consensus 149 -~~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~~~~~~~~~~~~l~~l~~------~-------~~~~~~~LSgG~k 214 (313)
.+.++|++|++..+ . .|++||+.++. .. ...+++.++++.++. . .+.++.+||||||
T Consensus 91 ~~~~i~~v~Q~~~l~-~--~tv~enl~~~~-----~~-~~~~~~~~~l~~~~l~~~~~~l~~~~~~~~~~~~~~LSgGqk 161 (260)
T 2ghi_A 91 IRSIIGIVPQDTILF-N--ETIKYNILYGK-----LD-ATDEEVIKATKSAQLYDFIEALPKKWDTIVGNKGMKLSGGER 161 (260)
T ss_dssp HHTTEEEECSSCCCC-S--EEHHHHHHTTC-----TT-CCHHHHHHHHHHTTCHHHHHTSTTGGGCEESSSSBCCCHHHH
T ss_pred HhccEEEEcCCCccc-c--cCHHHHHhccC-----CC-CCHHHHHHHHHHhCCHHHHHhccccccccccCCcCcCCHHHH
Confidence 23599999997543 3 59999997642 11 123445555555441 0 1245679999999
Q ss_pred CcchhhhhhccCceEEEEcCCccccCh----hhHHHHHhhccc--eEEEEcChHHHHH--HHh----hcccccCCchHHH
Q 021362 215 DPVEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFDE--KWFIEVDLDTAMQ--RVL----KRHISTGKPPDVA 282 (313)
Q Consensus 215 qRv~ia~al~~~ar~Li~d~~~lllDE----~~~~~l~~l~~~--~i~vtHd~~~~~~--rv~----griv~~G~~~ev~ 282 (313)
||++||+|++.++++|++|+|+..||. .+++.|+++.+. .+++|||++.+.. |++ |++++.|+++++.
T Consensus 162 qRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~l~~~~tviivtH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~ 241 (260)
T 2ghi_A 162 QRIAIARCLLKDPKIVIFDEATSSLDSKTEYLFQKAVEDLRKNRTLIIIAHRLSTISSAESIILLNKGKIVEKGTHKDLL 241 (260)
T ss_dssp HHHHHHHHHHHCCSEEEEECCCCTTCHHHHHHHHHHHHHHTTTSEEEEECSSGGGSTTCSEEEEEETTEEEEEECHHHHH
T ss_pred HHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHHHHhCCEEEEEECCEEEEECCHHHHH
Confidence 999999999999999999999999999 455566665432 4799999998754 554 8999999998886
Q ss_pred H
Q 021362 283 K 283 (313)
Q Consensus 283 ~ 283 (313)
.
T Consensus 242 ~ 242 (260)
T 2ghi_A 242 K 242 (260)
T ss_dssp H
T ss_pred h
Confidence 4
|
| >3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-36 Score=289.94 Aligned_cols=189 Identities=14% Similarity=0.148 Sum_probs=153.8
Q ss_pred EEEEccceEEc--cccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCCC-----
Q 021362 77 VVEARCMDEVY--DALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPP----- 149 (313)
Q Consensus 77 ~l~~~~l~~~y--~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~~----- 149 (313)
.|+++||+|.| ++.. +|+|+||+|++||+++|+||||||||||+|+|+|++ +++|+|.++|++..
T Consensus 19 ~i~~~~l~~~y~~~~~~----~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~----~~~G~I~i~G~~i~~~~~~ 90 (390)
T 3gd7_A 19 QMTVKDLTAKYTEGGNA----ILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLL----NTEGEIQIDGVSWDSITLE 90 (390)
T ss_dssp CEEEEEEEEESSSSSCC----SEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTCS----EEEEEEEESSCBTTSSCHH
T ss_pred eEEEEEEEEEecCCCeE----EeeceeEEEcCCCEEEEECCCCChHHHHHHHHhCCC----CCCeEEEECCEECCcCChH
Confidence 59999999999 4445 999999999999999999999999999999999998 67899999997643
Q ss_pred ---CeEEEEecCCCCCCcccCCcccChHHHHHhcCCCCCccHHHHHHHHHHhhc--CCCccCCC-----------CCCcC
Q 021362 150 ---DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN--QGSVYAPS-----------FDHGV 213 (313)
Q Consensus 150 ---~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~~~~~~~~~~~~l~~l~~--~~~~~~~~-----------LSgG~ 213 (313)
+.++|+||++..+ . +|++||+.+. .....+++.++++.++. ..++++.+ |||||
T Consensus 91 ~~rr~ig~v~Q~~~lf-~--~tv~enl~~~-------~~~~~~~v~~~l~~~~L~~~~~~~p~~l~~~i~~~g~~LSGGq 160 (390)
T 3gd7_A 91 QWRKAFGVIPQKVFIF-S--GTFRKNLDPN-------AAHSDQEIWKVADEVGLRSVIEQFPGKLDFVLVDGGCVLSHGH 160 (390)
T ss_dssp HHHHTEEEESCCCCCC-S--EEHHHHHCTT-------CCSCHHHHHHHHHHTTCHHHHTTSTTGGGCEECTTTTTSCHHH
T ss_pred HHhCCEEEEcCCcccC-c--cCHHHHhhhc-------cccCHHHHHHHHHHhCCHHHHhhcccccccccccccccCCHHH
Confidence 3599999996543 3 6999998531 12345677888888873 33455555 99999
Q ss_pred CCcchhhhhhccCceEEEEcCCccccCh----hhHHHHHhhccc--eEEEEcChHHHHH--HHh----hcccccCCchHH
Q 021362 214 GDPVEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFDE--KWFIEVDLDTAMQ--RVL----KRHISTGKPPDV 281 (313)
Q Consensus 214 kqRv~ia~al~~~ar~Li~d~~~lllDE----~~~~~l~~l~~~--~i~vtHd~~~~~~--rv~----griv~~G~~~ev 281 (313)
||||+||+|++.++++|++|+|+..||. .+++.|+++... .++||||++.+.. |++ |++++.|+++++
T Consensus 161 rQRvalARAL~~~P~lLLLDEPts~LD~~~~~~l~~~l~~~~~~~tvi~vtHd~e~~~~aDri~vl~~G~i~~~g~~~el 240 (390)
T 3gd7_A 161 KQLMCLARSVLSKAKILLLDEPSAHLDPVTYQIIRRTLKQAFADCTVILCEARIEAMLECDQFLVIEENKVRQYDSILEL 240 (390)
T ss_dssp HHHHHHHHHHHTTCCEEEEESHHHHSCHHHHHHHHHHHHTTTTTSCEEEECSSSGGGTTCSEEEEEETTEEEEESSHHHH
T ss_pred HHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHhCCCEEEEEEcCHHHHHhCCEEEEEECCEEEEECCHHHH
Confidence 9999999999999999999999999999 445555554322 4799999876544 655 999999999998
Q ss_pred HH
Q 021362 282 AK 283 (313)
Q Consensus 282 ~~ 283 (313)
..
T Consensus 241 ~~ 242 (390)
T 3gd7_A 241 YH 242 (390)
T ss_dssp HH
T ss_pred Hh
Confidence 65
|
| >3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-34 Score=287.97 Aligned_cols=194 Identities=16% Similarity=0.114 Sum_probs=156.3
Q ss_pred EEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCC--------
Q 021362 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP-------- 148 (313)
Q Consensus 77 ~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~-------- 148 (313)
+|+++|+++.|++.. ..+|+|+||++++||+++|+||||||||||+++|+|+++ |++|+|.++|++.
T Consensus 341 ~i~~~~v~~~y~~~~--~~~l~~i~l~i~~G~~~~ivG~sGsGKSTll~~l~g~~~---p~~G~i~~~g~~~~~~~~~~~ 415 (582)
T 3b5x_A 341 EVDVKDVTFTYQGKE--KPALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYD---VDSGSICLDGHDVRDYKLTNL 415 (582)
T ss_pred eEEEEEEEEEcCCCC--ccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCC---CCCCEEEECCEEhhhCCHHHH
Confidence 699999999997521 129999999999999999999999999999999999999 9999999999763
Q ss_pred CCeEEEEecCCCCCCcccCCcccChHHHHHhcCCCCCccHHHHHHHHHHhhcC-------------CCccCCCCCCcCCC
Q 021362 149 PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ-------------GSVYAPSFDHGVGD 215 (313)
Q Consensus 149 ~~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~-------------~~~~~~~LSgG~kq 215 (313)
++.++|++|++..+ + .|++||+.++.. + ....+++.++++.++.. ......+|||||||
T Consensus 416 ~~~i~~v~Q~~~l~-~--~tv~eni~~~~~----~-~~~~~~~~~~~~~~~l~~~~~~~p~g~~t~~~~~~~~LSgGq~q 487 (582)
T 3b5x_A 416 RRHFALVSQNVHLF-N--DTIANNIAYAAE----G-EYTREQIEQAARQAHAMEFIENMPQGLDTVIGENGTSLSGGQRQ 487 (582)
T ss_pred hcCeEEEcCCCccc-c--ccHHHHHhccCC----C-CCCHHHHHHHHHHCCCHHHHHhCcccccchhcCCCCcCCHHHHH
Confidence 24699999997644 3 599999987521 1 12345666676665421 12244699999999
Q ss_pred cchhhhhhccCceEEEEcCCccccCh----hhHHHHHhhccc--eEEEEcChHHHHH--HHh----hcccccCCchHHHH
Q 021362 216 PVEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFDE--KWFIEVDLDTAMQ--RVL----KRHISTGKPPDVAK 283 (313)
Q Consensus 216 Rv~ia~al~~~ar~Li~d~~~lllDE----~~~~~l~~l~~~--~i~vtHd~~~~~~--rv~----griv~~G~~~ev~~ 283 (313)
|++||+|++.++++|++|+|+..||. .+.+.|+++.+. .++||||++.+.. |++ |++++.|+++++..
T Consensus 488 r~~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~ 567 (582)
T 3b5x_A 488 RVAIARALLRDAPVLILDEATSALDTESERAIQAALDELQKNKTVLVIAHRLSTIEQADEILVVDEGEIIERGRHADLLA 567 (582)
T ss_pred HHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 99999999999999999999999999 455556655432 4799999998866 555 99999999998864
|
| >3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-34 Score=287.66 Aligned_cols=193 Identities=12% Similarity=0.110 Sum_probs=156.6
Q ss_pred EEEEccceEEccc--cccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCCC-----
Q 021362 77 VVEARCMDEVYDA--LAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPP----- 149 (313)
Q Consensus 77 ~l~~~~l~~~y~~--~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~~----- 149 (313)
+|+++|+++.|++ .. +|+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|++..
T Consensus 341 ~i~~~~v~~~y~~~~~~----~l~~v~~~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~---p~~G~i~~~g~~~~~~~~~ 413 (582)
T 3b60_A 341 DLEFRNVTFTYPGREVP----ALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYD---IDEGHILMDGHDLREYTLA 413 (582)
T ss_dssp CEEEEEEEECSSSSSCC----SEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTC---CSEEEEEETTEETTTBCHH
T ss_pred cEEEEEEEEEcCCCCCc----cccceeEEEcCCCEEEEECCCCCCHHHHHHHHhhccC---CCCCeEEECCEEccccCHH
Confidence 5999999999974 34 9999999999999999999999999999999999999 99999999997643
Q ss_pred ---CeEEEEecCCCCCCcccCCcccChHHHHHhcCCCCCccHHHHHHHHHHhhc-------------CCCccCCCCCCcC
Q 021362 150 ---DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN-------------QGSVYAPSFDHGV 213 (313)
Q Consensus 150 ---~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~~~~~~~~~~~~l~~l~~-------------~~~~~~~~LSgG~ 213 (313)
+.++|++|++..+ + .|++||+.++.. + ....+++.++++.++. .......+|||||
T Consensus 414 ~~~~~i~~v~Q~~~l~-~--~tv~eni~~~~~----~-~~~~~~~~~~l~~~~l~~~~~~~p~g~~~~~~~~~~~LSgGq 485 (582)
T 3b60_A 414 SLRNQVALVSQNVHLF-N--DTVANNIAYART----E-EYSREQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQ 485 (582)
T ss_dssp HHHHTEEEECSSCCCC-S--SBHHHHHHTTTT----S-CCCHHHHHHHHHTTTCHHHHHHSTTGGGSBCCTTSCSSCHHH
T ss_pred HHHhhCeEEccCCcCC-C--CCHHHHHhccCC----C-CCCHHHHHHHHHHcCCHHHHHhccccccccccCCCCCCCHHH
Confidence 2599999997644 3 599999987421 1 1234566677766542 1123456999999
Q ss_pred CCcchhhhhhccCceEEEEcCCccccCh----hhHHHHHhhcc--ceEEEEcChHHHHH--HHh----hcccccCCchHH
Q 021362 214 GDPVEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFD--EKWFIEVDLDTAMQ--RVL----KRHISTGKPPDV 281 (313)
Q Consensus 214 kqRv~ia~al~~~ar~Li~d~~~lllDE----~~~~~l~~l~~--~~i~vtHd~~~~~~--rv~----griv~~G~~~ev 281 (313)
|||++||+|++.++++|++|+|+..||. .+++.|+++.+ ..++||||++.+.. |++ |++++.|+++++
T Consensus 486 ~qrl~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l 565 (582)
T 3b60_A 486 RQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIEQADEIVVVEDGIIVERGTHSEL 565 (582)
T ss_dssp HHHHHHHHHHHHCCSEEEEETTTSSCCHHHHHHHHHHHHHHHTTSEEEEECSCGGGTTTCSEEEEEETTEEEEEECHHHH
T ss_pred HHHHHHHHHHHhCCCEEEEECccccCCHHHHHHHHHHHHHHhCCCEEEEEeccHHHHHhCCEEEEEECCEEEEecCHHHH
Confidence 9999999999999999999999999999 45555555543 24799999998765 555 999999999998
Q ss_pred HHH
Q 021362 282 AKW 284 (313)
Q Consensus 282 ~~~ 284 (313)
...
T Consensus 566 ~~~ 568 (582)
T 3b60_A 566 LAQ 568 (582)
T ss_dssp HHH
T ss_pred HHc
Confidence 653
|
| >3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=99.98 E-value=8.7e-34 Score=283.99 Aligned_cols=194 Identities=16% Similarity=0.137 Sum_probs=154.1
Q ss_pred EEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCCC-------
Q 021362 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPP------- 149 (313)
Q Consensus 77 ~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~~------- 149 (313)
.|+++|+++.|++. ...+|+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|++..
T Consensus 341 ~i~~~~v~~~y~~~--~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~g~~~---~~~G~i~i~g~~i~~~~~~~~ 415 (587)
T 3qf4_A 341 SVSFENVEFRYFEN--TDPVLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLID---PERGRVEVDELDVRTVKLKDL 415 (587)
T ss_dssp CEEEEEEEECSSSS--SCCSEEEEEEEECTTCEEEEECSSSSSHHHHHHTTTTSSC---CSEEEEEESSSBGGGBCHHHH
T ss_pred cEEEEEEEEEcCCC--CCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcc---CCCcEEEECCEEcccCCHHHH
Confidence 59999999999642 1239999999999999999999999999999999999999 99999999998743
Q ss_pred -CeEEEEecCCCCCCcccCCcccChHHHHHhcCCCCCccHHHHHHHHHHhh---------cC----CCccCCCCCCcCCC
Q 021362 150 -DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLR---------NQ----GSVYAPSFDHGVGD 215 (313)
Q Consensus 150 -~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~~~~~~~~~~~~l~~l~---------~~----~~~~~~~LSgG~kq 215 (313)
+.++|++|++..+. .|++||+.++. +. ...+++.+.++..+ .+ ...+..+|||||||
T Consensus 416 r~~i~~v~Q~~~lf~---~tv~eni~~~~-----~~-~~~~~~~~~~~~~~~~~~i~~l~~g~~~~~~~~~~~LSgGqrQ 486 (587)
T 3qf4_A 416 RGHISAVPQETVLFS---GTIKENLKWGR-----ED-ATDDEIVEAAKIAQIHDFIISLPEGYDSRVERGGRNFSGGQKQ 486 (587)
T ss_dssp HHHEEEECSSCCCCS---EEHHHHHTTTC-----SS-CCHHHHHHHHHHTTCHHHHHTSSSGGGCEECSSSCSSCHHHHH
T ss_pred HhheEEECCCCcCcC---ccHHHHHhccC-----CC-CCHHHHHHHHHHhCcHHHHHhcccchhhHhcCCCCCcCHHHHH
Confidence 35999999976543 49999997542 21 12333444443322 11 13455699999999
Q ss_pred cchhhhhhccCceEEEEcCCccccCh----hhHHHHHhhccc--eEEEEcChHHHHH--HHh----hcccccCCchHHHH
Q 021362 216 PVEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFDE--KWFIEVDLDTAMQ--RVL----KRHISTGKPPDVAK 283 (313)
Q Consensus 216 Rv~ia~al~~~ar~Li~d~~~lllDE----~~~~~l~~l~~~--~i~vtHd~~~~~~--rv~----griv~~G~~~ev~~ 283 (313)
|++||+|++.++++|++|+|+..||. .+.+.|+++.+. .++||||++.+.. |++ |++++.|+++|+..
T Consensus 487 rv~lARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~~d~i~vl~~G~i~~~g~~~el~~ 566 (587)
T 3qf4_A 487 RLSIARALVKKPKVLILDDCTSSVDPITEKRILDGLKRYTKGCTTFIITQKIPTALLADKILVLHEGKVAGFGTHKELLE 566 (587)
T ss_dssp HHHHHHHHHTCCSEEEEESCCTTSCHHHHHHHHHHHHHHSTTCEEEEEESCHHHHTTSSEEEEEETTEEEEEECHHHHHH
T ss_pred HHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHhCCCCEEEEEecChHHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 99999999999999999999999999 455555555432 4799999999866 655 99999999999876
Q ss_pred H
Q 021362 284 W 284 (313)
Q Consensus 284 ~ 284 (313)
.
T Consensus 567 ~ 567 (587)
T 3qf4_A 567 H 567 (587)
T ss_dssp H
T ss_pred C
Confidence 4
|
| >3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=99.98 E-value=4e-34 Score=287.03 Aligned_cols=193 Identities=14% Similarity=0.143 Sum_probs=152.9
Q ss_pred EEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCCC-------
Q 021362 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPP------- 149 (313)
Q Consensus 77 ~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~~------- 149 (313)
-|+++|+++.|++.. .+|+|+||++++||+++|+||||||||||+++|+|+++ |++|+|.++|++..
T Consensus 354 ~i~~~~v~~~y~~~~---~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~---p~~G~i~~~g~~i~~~~~~~~ 427 (598)
T 3qf4_B 354 EIEFKNVWFSYDKKK---PVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYD---VDRGQILVDGIDIRKIKRSSL 427 (598)
T ss_dssp CEEEEEEECCSSSSS---CSCCSEEEECCTTCEEEEECCTTSSTTHHHHHHTTSSC---CSEEEEEETTEEGGGSCHHHH
T ss_pred eEEEEEEEEECCCCC---ccccceEEEEcCCCEEEEECCCCCcHHHHHHHHhcCcC---CCCeEEEECCEEhhhCCHHHH
Confidence 499999999997421 29999999999999999999999999999999999999 99999999997643
Q ss_pred -CeEEEEecCCCCCCcccCCcccChHHHHHhcCCCCCccHHHHHHHHHHhhc---------CC----CccCCCCCCcCCC
Q 021362 150 -DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN---------QG----SVYAPSFDHGVGD 215 (313)
Q Consensus 150 -~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~~~~~~~~~~~~l~~l~~---------~~----~~~~~~LSgG~kq 215 (313)
+.++|++|++..+. .|++||+.++. +. ...+++.++++.++. +. .....+|||||||
T Consensus 428 r~~i~~v~Q~~~lf~---~tv~eni~~~~-----~~-~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGq~Q 498 (598)
T 3qf4_B 428 RSSIGIVLQDTILFS---TTVKENLKYGN-----PG-ATDEEIKEAAKLTHSDHFIKHLPEGYETVLTDNGEDLSQGQRQ 498 (598)
T ss_dssp HHHEEEECTTCCCCS---SBHHHHHHSSS-----TT-CCTTHHHHHTTTTTCHHHHHTSTTGGGCBCHHHHTTSCHHHHH
T ss_pred HhceEEEeCCCcccc---ccHHHHHhcCC-----CC-CCHHHHHHHHHHhCCHHHHHhccccccchhcCCCCCCCHHHHH
Confidence 35999999976443 59999997641 11 122334444443331 11 1233589999999
Q ss_pred cchhhhhhccCceEEEEcCCccccCh----hhHHHHHhhccc--eEEEEcChHHHHH--HHh----hcccccCCchHHHH
Q 021362 216 PVEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFDE--KWFIEVDLDTAMQ--RVL----KRHISTGKPPDVAK 283 (313)
Q Consensus 216 Rv~ia~al~~~ar~Li~d~~~lllDE----~~~~~l~~l~~~--~i~vtHd~~~~~~--rv~----griv~~G~~~ev~~ 283 (313)
|++||+|++.++++|++|+|+..||. .+.+.|.++.+. .++|||+++.+.. |++ |++++.|+++|+..
T Consensus 499 rv~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~~d~i~~l~~G~i~~~g~~~~l~~ 578 (598)
T 3qf4_B 499 LLAITRAFLANPKILILDEATSNVDTKTEKSIQAAMWKLMEGKTSIIIAHRLNTIKNADLIIVLRDGEIVEMGKHDELIQ 578 (598)
T ss_dssp HHHHHHHHHTCCSEEEECCCCTTCCHHHHHHHHHHHHHHHTTSEEEEESCCTTHHHHCSEEEEECSSSEEECSCHHHHHH
T ss_pred HHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHcCCEEEEEECCEEEEECCHHHHHh
Confidence 99999999999999999999999999 455555555432 4799999999877 655 99999999999875
Q ss_pred H
Q 021362 284 W 284 (313)
Q Consensus 284 ~ 284 (313)
.
T Consensus 579 ~ 579 (598)
T 3qf4_B 579 K 579 (598)
T ss_dssp T
T ss_pred C
Confidence 3
|
| >4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A | Back alignment and structure |
|---|
Probab=99.98 E-value=4.9e-34 Score=285.38 Aligned_cols=194 Identities=12% Similarity=0.087 Sum_probs=154.4
Q ss_pred EEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCCC-------
Q 021362 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPP------- 149 (313)
Q Consensus 77 ~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~~------- 149 (313)
.|+++|+++.|++. ...+|+|+||++++||+++|+||||||||||+++|+|+++ |++|+|.++|.+..
T Consensus 339 ~i~~~~v~~~y~~~--~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~---p~~G~i~~~g~~~~~~~~~~~ 413 (578)
T 4a82_A 339 RIDIDHVSFQYNDN--EAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYD---VTSGQILIDGHNIKDFLTGSL 413 (578)
T ss_dssp CEEEEEEEECSCSS--SCCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSC---CSEEEEEETTEEGGGSCHHHH
T ss_pred eEEEEEEEEEcCCC--CCcceeeeEEEECCCCEEEEECCCCChHHHHHHHHhcCCC---CCCcEEEECCEEhhhCCHHHH
Confidence 49999999999752 1239999999999999999999999999999999999999 99999999997643
Q ss_pred -CeEEEEecCCCCCCcccCCcccChHHHHHhcCCCCCccHHHHHHHHHHhhc---------C----CCccCCCCCCcCCC
Q 021362 150 -DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN---------Q----GSVYAPSFDHGVGD 215 (313)
Q Consensus 150 -~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~~~~~~~~~~~~l~~l~~---------~----~~~~~~~LSgG~kq 215 (313)
+.++|++|++..+. .|++||+.++. +. ...+++.+.++..+. + ......+|||||||
T Consensus 414 r~~i~~v~Q~~~l~~---~tv~eni~~~~-----~~-~~~~~~~~~~~~~~~~~~~~~lp~g~~t~~~~~g~~LSgGq~Q 484 (578)
T 4a82_A 414 RNQIGLVQQDNILFS---DTVKENILLGR-----PT-ATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQ 484 (578)
T ss_dssp HHTEEEECSSCCCCS---SBHHHHHGGGC-----SS-CCHHHHHHHHHHTTCHHHHHTSTTGGGCBCCGGGTTSCHHHHH
T ss_pred hhheEEEeCCCccCc---ccHHHHHhcCC-----CC-CCHHHHHHHHHHhCcHHHHHhCcchhhhhhccCCCcCCHHHHH
Confidence 35999999976543 49999997642 22 223445555554431 1 12344589999999
Q ss_pred cchhhhhhccCceEEEEcCCccccCh----hhHHHHHhhccc--eEEEEcChHHHHH--HHh----hcccccCCchHHHH
Q 021362 216 PVEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFDE--KWFIEVDLDTAMQ--RVL----KRHISTGKPPDVAK 283 (313)
Q Consensus 216 Rv~ia~al~~~ar~Li~d~~~lllDE----~~~~~l~~l~~~--~i~vtHd~~~~~~--rv~----griv~~G~~~ev~~ 283 (313)
|++||+|++.++++|++|+|+..||+ .+.+.++++.+. .++||||++.+.. |++ |++++.|+++|+..
T Consensus 485 rv~lAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~~d~i~~l~~G~i~~~g~~~el~~ 564 (578)
T 4a82_A 485 RLSIARIFLNNPPILILDEATSALDLESESIIQEALDVLSKDRTTLIVAHRLSTITHADKIVVIENGHIVETGTHRELIA 564 (578)
T ss_dssp HHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSSGGGTTTCSEEEEEETTEEEEEECHHHHHH
T ss_pred HHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHcCCEEEEEECCEEEEECCHHHHHh
Confidence 99999999999999999999999999 445555555432 4799999999866 555 99999999999865
Q ss_pred H
Q 021362 284 W 284 (313)
Q Consensus 284 ~ 284 (313)
.
T Consensus 565 ~ 565 (578)
T 4a82_A 565 K 565 (578)
T ss_dssp T
T ss_pred C
Confidence 4
|
| >2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A* | Back alignment and structure |
|---|
Probab=99.98 E-value=3.2e-33 Score=256.77 Aligned_cols=183 Identities=10% Similarity=0.110 Sum_probs=132.8
Q ss_pred cEEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCCCCeEEEE
Q 021362 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVL 155 (313)
Q Consensus 76 ~~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~~~~i~~v 155 (313)
++|+++|+++.+ .. +|+++||+|++|++++|+||||||||||+|+|+|+++ |++|+|.++| .++|+
T Consensus 39 ~~l~~~~l~~~~--~~----vl~~isl~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~---p~~G~I~~~g-----~i~~v 104 (290)
T 2bbs_A 39 DSLSFSNFSLLG--TP----VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELE---PSEGKIKHSG-----RISFC 104 (290)
T ss_dssp -----------C--CC----SEEEEEEEECTTCEEEEEESTTSSHHHHHHHHTTSSC---EEEEEEECCS-----CEEEE
T ss_pred ceEEEEEEEEcC--ce----EEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC---CCCcEEEECC-----EEEEE
Confidence 369999999864 34 9999999999999999999999999999999999999 9999999988 48999
Q ss_pred ecCCCCCCcccCCcccChHHHHHhcCCCCCccHHHHHHHHHHhhc------C-------CCccCCCCCCcCCCcchhhhh
Q 021362 156 PMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN------Q-------GSVYAPSFDHGVGDPVEDDIL 222 (313)
Q Consensus 156 ~qd~~~~~~~~ltv~e~~~~~~~~~~~~~~~~~~~~~~~l~~l~~------~-------~~~~~~~LSgG~kqRv~ia~a 222 (313)
+|++.. +. .|++||+. +. .. ....+.+.++.++. . .+..+.+||||||||++||+|
T Consensus 105 ~Q~~~l-~~--~tv~enl~-~~-----~~--~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~QRv~lAra 173 (290)
T 2bbs_A 105 SQNSWI-MP--GTIKENII-GV-----SY--DEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARA 173 (290)
T ss_dssp CSSCCC-CS--SBHHHHHH-TT-----CC--CHHHHHHHHHHTTCHHHHHTSTTGGGCBC----CCCCHHHHHHHHHHHH
T ss_pred eCCCcc-Cc--ccHHHHhh-Cc-----cc--chHHHHHHHHHhChHHHHHhccccccchhcCccCcCCHHHHHHHHHHHH
Confidence 999654 33 49999986 21 11 11222233332221 1 122356999999999999999
Q ss_pred hccCceEEEEcCCccccChhhHHHHHhh-cc------ceEEEEcChHHHHH--HHh----hcccccCCchHHHH
Q 021362 223 VGLQHKVVIVDGNYLFLDGGVWKDVSSM-FD------EKWFIEVDLDTAMQ--RVL----KRHISTGKPPDVAK 283 (313)
Q Consensus 223 l~~~ar~Li~d~~~lllDE~~~~~l~~l-~~------~~i~vtHd~~~~~~--rv~----griv~~G~~~ev~~ 283 (313)
++.++++|++|+|+..||....+.+.++ .. ..|++|||++.+.. |++ |++++.|+++++..
T Consensus 174 L~~~p~lllLDEPts~LD~~~~~~i~~~ll~~~~~~~tviivtHd~~~~~~~d~i~~l~~G~i~~~g~~~~l~~ 247 (290)
T 2bbs_A 174 VYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLKKADKILILHEGSSYFYGTFSELQN 247 (290)
T ss_dssp HHSCCSEEEEESTTTTCCHHHHHHHHHHCCCCCTTTSEEEEECCCHHHHHHSSEEEEEETTEEEEEECHHHHHH
T ss_pred HHCCCCEEEEECCcccCCHHHHHHHHHHHHHHhhCCCEEEEEecCHHHHHcCCEEEEEECCeEEEeCCHHHHhh
Confidence 9999999999999999999766666653 21 24799999998765 544 89999999988854
|
| >3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=2.3e-32 Score=253.63 Aligned_cols=212 Identities=20% Similarity=0.283 Sum_probs=165.8
Q ss_pred EEEEccceEEccccccccccccccccc-----------------------cCCCcEEEEECCCCCcHHHHHHHHHHHhcc
Q 021362 77 VVEARCMDEVYDALAQRLLPTSALASN-----------------------VNVKHIVGLAGPPGAGKSTLAAEVVRRINK 133 (313)
Q Consensus 77 ~l~~~~l~~~y~~~~~~~~~L~~vsl~-----------------------i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~ 133 (313)
.|++++|++.|+. +++++++. +++|+++||+||||||||||+++|+|+++
T Consensus 43 ~i~~~~v~~~y~p------~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~ivgI~G~sGsGKSTL~~~L~gll~- 115 (312)
T 3aez_A 43 QIDLLEVEEVYLP------LARLIHLQVAARQRLFAATAEFLGEPQQNPDRPVPFIIGVAGSVAVGKSTTARVLQALLA- 115 (312)
T ss_dssp CCCHHHHHHTHHH------HHHHHHHHHHHHHHHHHHHHHHTTCCCCCSSSCCCEEEEEECCTTSCHHHHHHHHHHHHH-
T ss_pred eEEeeehhhhhhh------HHHHHHHHHhhhhHHHHHHHHhhcccccccCCCCCEEEEEECCCCchHHHHHHHHHhhcc-
Confidence 5899999999963 55555553 89999999999999999999999999998
Q ss_pred cCCCCceeecCCCCCCCeEEEEecCCCCCCcccCCcccChHHHHHhcCCCCCccHHHHHHHHHHhhcCC-CccCCCCCCc
Q 021362 134 IWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQG-SVYAPSFDHG 212 (313)
Q Consensus 134 ~~p~~G~i~~~g~~~~~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~-~~~~~~LSgG 212 (313)
|+.|. ..+++++||+++++ . |+.+|+.+. ..++.+...+.+.+.++|+.++... +.++++||||
T Consensus 116 --~~~G~---------~~v~~v~qd~~~~~--~-t~~e~~~~~-~~~g~~~~~d~~~~~~~L~~l~~~~~~~~~~~lS~G 180 (312)
T 3aez_A 116 --RWDHH---------PRVDLVTTDGFLYP--N-AELQRRNLM-HRKGFPESYNRRALMRFVTSVKSGSDYACAPVYSHL 180 (312)
T ss_dssp --TSTTC---------CCEEEEEGGGGBCC--H-HHHHHTTCT-TCTTSGGGBCHHHHHHHHHHHHTTCSCEEEEEEETT
T ss_pred --ccCCC---------CeEEEEecCccCCc--c-cHHHHHHHH-HhcCCChHHHHHHHHHHHHHhCCCcccCCcccCChh
Confidence 87653 35899999977544 3 788887542 2245666677788899999998433 4678899999
Q ss_pred CCCcchhhhhhccCceEEEEcCCccccChhhHHHHHhhccceEEEEcChHHHHHHHhhcccc----------------cC
Q 021362 213 VGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEKWFIEVDLDTAMQRVLKRHIS----------------TG 276 (313)
Q Consensus 213 ~kqRv~ia~al~~~ar~Li~d~~~lllDE~~~~~l~~l~~~~i~vtHd~~~~~~rv~griv~----------------~G 276 (313)
|+||+++|++++.++++||+|++++++|..- ..+.++++..|+|+||.+.+..|.+.|.+. .|
T Consensus 181 ~~qRv~~a~al~~~p~ilIlDep~~~~d~~~-~~l~~~~D~~I~V~a~~~~~~~R~i~R~~~~rd~~~r~~~~~~~~~~g 259 (312)
T 3aez_A 181 HYDIIPGAEQVVRHPDILILEGLNVLQTGPT-LMVSDLFDFSLYVDARIEDIEQWYVSRFLAMRTTAFADPESHFHHYAA 259 (312)
T ss_dssp TTEEEEEEEEEECSCSEEEEECTTTTCCCSS-CCGGGGCSEEEEEEECHHHHHHHHHHHHHHHTTTGGGSTTSTTGGGTT
T ss_pred hhhhhhhHHHhccCCCEEEECCccccCCcch-HHHHHhcCcEEEEECCHHHHHHHHHHHHHHHHhccccCcchhhhcccC
Confidence 9999999999999999999999999986311 246677788899999999888766644331 14
Q ss_pred CchHH----HHHHHHhcCCchhH-HhhhcccCccEEeecC
Q 021362 277 KPPDV----AKWRIEYNDRPNAE-LIMKSKKNADLVIKSI 311 (313)
Q Consensus 277 ~~~ev----~~~~~~~~~~~~~~-~i~~~~~~ad~ii~~~ 311 (313)
-+++- +..+|...++|+.+ ||+|.+..||+||++.
T Consensus 260 ~s~e~a~~~v~~~~~~~~~p~~~~~i~p~~~~ADlii~~~ 299 (312)
T 3aez_A 260 FSDSQAVVAAREIWRTINRPNLVENILPTRPRATLVLRKD 299 (312)
T ss_dssp CCHHHHHHHHHHHHHHTHHHHHHHTTGGGGGGCSEEEEEC
T ss_pred CCHHHHHHHHHHHHHhccHHHHHHhccCCCCCCeEEEecC
Confidence 33333 34557778899987 9999999999999865
|
| >4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.4e-32 Score=296.64 Aligned_cols=197 Identities=15% Similarity=0.096 Sum_probs=161.4
Q ss_pred EEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCCC-------
Q 021362 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPP------- 149 (313)
Q Consensus 77 ~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~~------- 149 (313)
-|+++||+++|.+.. +.++|+|+||+|++||.+||+||||||||||+++|.|++. |++|+|.+||.+..
T Consensus 1076 ~I~f~nVsf~Y~~~~-~~~VL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~---p~~G~I~iDG~di~~i~~~~l 1151 (1321)
T 4f4c_A 1076 KVIFKNVRFAYPERP-EIEILKGLSFSVEPGQTLALVGPSGCGKSTVVALLERFYD---TLGGEIFIDGSEIKTLNPEHT 1151 (1321)
T ss_dssp CEEEEEEEECCTTSC-SSCSEEEEEEEECTTCEEEEECSTTSSTTSHHHHHTTSSC---CSSSEEEETTEETTTBCHHHH
T ss_pred eEEEEEEEEeCCCCC-CCccccceeEEECCCCEEEEECCCCChHHHHHHHHhcCcc---CCCCEEEECCEEhhhCCHHHH
Confidence 499999999997542 2349999999999999999999999999999999999999 99999999998753
Q ss_pred -CeEEEEecCCCCCCcccCCcccChHHHHHhcCCCCCccHHHHHHHHHHhhc---------CCCccC----CCCCCcCCC
Q 021362 150 -DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN---------QGSVYA----PSFDHGVGD 215 (313)
Q Consensus 150 -~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~~~~~~~~~~~~l~~l~~---------~~~~~~----~~LSgG~kq 215 (313)
+.+++|+||++.+. -|++||+.++. .+.....+.+.++++..+. +.+..+ .+|||||||
T Consensus 1152 R~~i~~V~Qdp~LF~---gTIreNI~~gl----d~~~~sd~ei~~Al~~a~l~~~I~~Lp~GldT~vge~G~~LSgGQrQ 1224 (1321)
T 4f4c_A 1152 RSQIAIVSQEPTLFD---CSIAENIIYGL----DPSSVTMAQVEEAARLANIHNFIAELPEGFETRVGDRGTQLSGGQKQ 1224 (1321)
T ss_dssp HTTEEEECSSCCCCS---EEHHHHHSSSS----CTTTSCHHHHHHHHHHTTCHHHHHTSTTTTCSEETTTSCSSCHHHHH
T ss_pred HhheEEECCCCEeeC---ccHHHHHhccC----CCCCCCHHHHHHHHHHhCChHHHHcCcCCCCCEecCCCcccCHHHHH
Confidence 46999999987655 49999996542 1233455667777766541 233333 389999999
Q ss_pred cchhhhhhccCceEEEEcCCccccCh----hhHHHHHhhccc--eEEEEcChHHHHH--HHh----hcccccCCchHHHH
Q 021362 216 PVEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFDE--KWFIEVDLDTAMQ--RVL----KRHISTGKPPDVAK 283 (313)
Q Consensus 216 Rv~ia~al~~~ar~Li~d~~~lllDE----~~~~~l~~l~~~--~i~vtHd~~~~~~--rv~----griv~~G~~~ev~~ 283 (313)
|++||||+.+++++|++|+++.-+|. .+.+.|+++.+. .|+|+|.++.+.. ||+ ||+++.|+++|+++
T Consensus 1225 riaiARAllr~~~ILiLDEaTSaLD~~tE~~Iq~~l~~~~~~~TvI~IAHRLsTi~~aD~I~Vld~G~IvE~Gth~eLl~ 1304 (1321)
T 4f4c_A 1225 RIAIARALVRNPKILLLDEATSALDTESEKVVQEALDRAREGRTCIVIAHRLNTVMNADCIAVVSNGTIIEKGTHTQLMS 1304 (1321)
T ss_dssp HHHHHHHHHSCCSEEEEESCCCSTTSHHHHHHHHHHTTTSSSSEEEEECSSSSTTTTCSEEEEESSSSEEEEECHHHHHH
T ss_pred HHHHHHHHHhCCCEEEEeCccccCCHHHHHHHHHHHHHHcCCCEEEEeccCHHHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 99999999999999999999999998 455556655543 4799999999888 766 99999999999986
Q ss_pred H
Q 021362 284 W 284 (313)
Q Consensus 284 ~ 284 (313)
.
T Consensus 1305 ~ 1305 (1321)
T 4f4c_A 1305 E 1305 (1321)
T ss_dssp C
T ss_pred C
Confidence 4
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* | Back alignment and structure |
|---|
Probab=99.97 E-value=2.4e-31 Score=266.60 Aligned_cols=189 Identities=15% Similarity=0.138 Sum_probs=153.8
Q ss_pred cEEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCCCCeEEEE
Q 021362 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVL 155 (313)
Q Consensus 76 ~~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~~~~i~~v 155 (313)
++++++|+++.|++. .|+++||+|++||++||+||||||||||+|+|+|+++ |++|+|.+. ..++|+
T Consensus 356 ~~l~~~~l~~~~~~~-----~l~~~~~~v~~Gei~~i~G~NGsGKSTLlk~l~Gl~~---p~~G~I~~~-----~~i~~v 422 (607)
T 3bk7_A 356 TLVEYPRLVKDYGSF-----KLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEE---PTEGKVEWD-----LTVAYK 422 (607)
T ss_dssp EEEEECCEEEECSSC-----EEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSC---CSBSCCCCC-----CCEEEE
T ss_pred eEEEEeceEEEecce-----EEEecccccCCCCEEEEECCCCCCHHHHHHHHhcCCC---CCceEEEEe-----eEEEEE
Confidence 479999999999762 6899999999999999999999999999999999999 999999872 459999
Q ss_pred ecCCCCCCcccCCcccChHHH-HHhcCCCCCccHHHHHHHHHHhhc--CCCccCCCCCCcCCCcchhhhhhccCceEEEE
Q 021362 156 PMDGFHLYLSQLDAMEDPKEA-HARRGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDILVGLQHKVVIV 232 (313)
Q Consensus 156 ~qd~~~~~~~~ltv~e~~~~~-~~~~~~~~~~~~~~~~~~l~~l~~--~~~~~~~~LSgG~kqRv~ia~al~~~ar~Li~ 232 (313)
+|+....+ .+||.+++... .... ...+.+.++++.++. ..++++.+|||||||||+||++++.++++|++
T Consensus 423 ~Q~~~~~~--~~tv~e~~~~~~~~~~-----~~~~~~~~~l~~~~l~~~~~~~~~~LSGGe~QRv~iAraL~~~p~lLlL 495 (607)
T 3bk7_A 423 PQYIKAEY--EGTVYELLSKIDSSKL-----NSNFYKTELLKPLGIIDLYDRNVEDLSGGELQRVAIAATLLRDADIYLL 495 (607)
T ss_dssp CSSCCCCC--SSBHHHHHHHHHHHHH-----HCHHHHHHTHHHHTCTTTTTSBGGGCCHHHHHHHHHHHHHTSCCSEEEE
T ss_pred ecCccCCC--CCcHHHHHHhhhccCC-----CHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEE
Confidence 99964433 47998877654 1111 124567788888884 45667889999999999999999999999999
Q ss_pred cCCccccCh----hhHHHHHhhcc----ceEEEEcChHHHHH---HHh------hcccccCCchHHHHH
Q 021362 233 DGNYLFLDG----GVWKDVSSMFD----EKWFIEVDLDTAMQ---RVL------KRHISTGKPPDVAKW 284 (313)
Q Consensus 233 d~~~lllDE----~~~~~l~~l~~----~~i~vtHd~~~~~~---rv~------griv~~G~~~ev~~~ 284 (313)
|+|+..||. .+++.|+++.. ..++||||++++.. |++ |++++.|+|+++...
T Consensus 496 DEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~~~~~~~adrv~vl~~~~g~~~~~g~p~~~~~~ 564 (607)
T 3bk7_A 496 DEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVSDRLIVFEGEPGRHGRALPPMGMREG 564 (607)
T ss_dssp ECTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEEEETTTEEEECCCEEHHHH
T ss_pred eCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEcCCcceEEecCCHHHHHhh
Confidence 999999999 45666666542 24799999999987 554 455568999988753
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=99.97 E-value=2.2e-31 Score=263.76 Aligned_cols=190 Identities=14% Similarity=0.094 Sum_probs=152.9
Q ss_pred cEEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCCCCeEEEE
Q 021362 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVL 155 (313)
Q Consensus 76 ~~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~~~~i~~v 155 (313)
++++++|+++.|++. .|+++||+|++||++||+||||||||||+|+|+|+++ |++|+|.+. ..++|+
T Consensus 286 ~~l~~~~l~~~~~~~-----~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~---p~~G~i~~~-----~~i~~v 352 (538)
T 1yqt_A 286 TLVTYPRLVKDYGSF-----RLEVEPGEIKKGEVIGIVGPNGIGKTTFVKMLAGVEE---PTEGKIEWD-----LTVAYK 352 (538)
T ss_dssp EEEEECCEEEEETTE-----EEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSC---CSBCCCCCC-----CCEEEE
T ss_pred eEEEEeeEEEEECCE-----EEEeCccccCCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCeEEEEC-----ceEEEE
Confidence 479999999999762 6899999999999999999999999999999999999 999999872 459999
Q ss_pred ecCCCCCCcccCCcccChHHHHHhcCCCCCccHHHHHHHHHHhhc--CCCccCCCCCCcCCCcchhhhhhccCceEEEEc
Q 021362 156 PMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVD 233 (313)
Q Consensus 156 ~qd~~~~~~~~ltv~e~~~~~~~~~~~~~~~~~~~~~~~l~~l~~--~~~~~~~~LSgG~kqRv~ia~al~~~ar~Li~d 233 (313)
+|+.... ..+|+.+++....... . ...+.+.++++.++. ..++++.+|||||||||+||++++.++++|++|
T Consensus 353 ~Q~~~~~--~~~tv~~~~~~~~~~~-~---~~~~~~~~~l~~~~l~~~~~~~~~~LSGGe~qrv~lAraL~~~p~lLlLD 426 (538)
T 1yqt_A 353 PQYIKAD--YEGTVYELLSKIDASK-L---NSNFYKTELLKPLGIIDLYDREVNELSGGELQRVAIAATLLRDADIYLLD 426 (538)
T ss_dssp CSSCCCC--CSSBHHHHHHHHHHHH-H---TCHHHHHHTTTTTTCGGGTTSBGGGCCHHHHHHHHHHHHHTSCCSEEEEE
T ss_pred ecCCcCC--CCCcHHHHHHhhhccC-C---CHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEe
Confidence 9996543 2478987765431111 1 124567778888873 456678899999999999999999999999999
Q ss_pred CCccccCh----hhHHHHHhhcc----ceEEEEcChHHHHH---HHh------hcccccCCchHHHHH
Q 021362 234 GNYLFLDG----GVWKDVSSMFD----EKWFIEVDLDTAMQ---RVL------KRHISTGKPPDVAKW 284 (313)
Q Consensus 234 ~~~lllDE----~~~~~l~~l~~----~~i~vtHd~~~~~~---rv~------griv~~G~~~ev~~~ 284 (313)
+|+..||. .+++.|+++.+ ..++||||++++.. |++ |++++.|+++++...
T Consensus 427 EPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vsHd~~~~~~~~drv~vl~~~~~~~~~~g~~~~~~~~ 494 (538)
T 1yqt_A 427 EPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVSDRLMVFEGEPGKYGRALPPMGMREG 494 (538)
T ss_dssp CTTTTCCHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHHHHHCSEEEEEEEETTTEEEECCCEEHHHH
T ss_pred CCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEeCCcceEeecCCHHHHHhh
Confidence 99999999 45666666542 24799999999987 554 456668999888753
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=99.96 E-value=6.3e-31 Score=260.23 Aligned_cols=190 Identities=16% Similarity=0.173 Sum_probs=150.2
Q ss_pred cEEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCCCCeEEEE
Q 021362 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVL 155 (313)
Q Consensus 76 ~~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~~~~i~~v 155 (313)
++++++++++.|++. .|+++||+|++||++||+||||||||||+|+|+|+++ |++|+|.+++. .++|+
T Consensus 268 ~~l~~~~l~~~~~~~-----~l~~~~~~i~~Gei~~i~G~nGsGKSTLl~~l~Gl~~---p~~G~i~~~~~----~i~~~ 335 (538)
T 3ozx_A 268 TKMKWTKIIKKLGDF-----QLVVDNGEAKEGEIIGILGPNGIGKTTFARILVGEIT---ADEGSVTPEKQ----ILSYK 335 (538)
T ss_dssp EEEEECCEEEEETTE-----EEEECCEEEETTCEEEEECCTTSSHHHHHHHHTTSSC---CSBCCEESSCC----CEEEE
T ss_pred ceEEEcceEEEECCE-----EEEeccceECCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCcEEEECCe----eeEee
Confidence 479999999999863 5788899999999999999999999999999999999 99999998753 58999
Q ss_pred ecCCCCCCcccCCcccChHHHHHhcCCCCCccHHHHHHHHHHhh--cCCCccCCCCCCcCCCcchhhhhhccCceEEEEc
Q 021362 156 PMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLR--NQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVD 233 (313)
Q Consensus 156 ~qd~~~~~~~~ltv~e~~~~~~~~~~~~~~~~~~~~~~~l~~l~--~~~~~~~~~LSgG~kqRv~ia~al~~~ar~Li~d 233 (313)
+|+.+..+ .+|+.+|+..... .. .......+.++++.++ ...++++.+|||||||||+||+|++.++++|++|
T Consensus 336 ~q~~~~~~--~~tv~~~l~~~~~--~~-~~~~~~~~~~~l~~~~l~~~~~~~~~~LSGGq~QRv~iAraL~~~p~lLlLD 410 (538)
T 3ozx_A 336 PQRIFPNY--DGTVQQYLENASK--DA-LSTSSWFFEEVTKRLNLHRLLESNVNDLSGGELQKLYIAATLAKEADLYVLD 410 (538)
T ss_dssp CSSCCCCC--SSBHHHHHHHHCS--ST-TCTTSHHHHHTTTTTTGGGCTTSBGGGCCHHHHHHHHHHHHHHSCCSEEEEE
T ss_pred chhccccc--CCCHHHHHHHhhh--hc-cchhHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEe
Confidence 99855333 4799998876321 11 1122345677788777 4466788899999999999999999999999999
Q ss_pred CCccccCh----hhHHHHHhhccc----eEEEEcChHHHHH---HHh---h---cccccCCchHHH
Q 021362 234 GNYLFLDG----GVWKDVSSMFDE----KWFIEVDLDTAMQ---RVL---K---RHISTGKPPDVA 282 (313)
Q Consensus 234 ~~~lllDE----~~~~~l~~l~~~----~i~vtHd~~~~~~---rv~---g---riv~~G~~~ev~ 282 (313)
+|+..||. .+++.|+++.++ +++||||++++.. |++ | .....+.+.++.
T Consensus 411 EPT~gLD~~~~~~i~~~l~~l~~~~g~tvi~vsHdl~~~~~~aDri~vl~~~~~~~~~~~~~~~~~ 476 (538)
T 3ozx_A 411 QPSSYLDVEERYIVAKAIKRVTRERKAVTFIIDHDLSIHDYIADRIIVFKGEPEKAGLATSPVTLK 476 (538)
T ss_dssp STTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEEEETTTEEEECCCEEHH
T ss_pred CCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEeCCcceeccCCChHHHH
Confidence 99999999 566666666432 4799999999987 555 3 333455665543
|
| >4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.96 E-value=7.1e-31 Score=283.40 Aligned_cols=194 Identities=15% Similarity=0.120 Sum_probs=158.1
Q ss_pred EEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCCCC------
Q 021362 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPD------ 150 (313)
Q Consensus 77 ~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~~~------ 150 (313)
-|+++|+++.|++.. +.++|+|+||+|++|+.++|+||+|||||||+++|.|++. |++|+|.++|.+..+
T Consensus 415 ~I~~~nvsF~Y~~~~-~~~vL~~isl~i~~G~~vaivG~sGsGKSTll~ll~~~~~---~~~G~I~idG~~i~~~~~~~l 490 (1321)
T 4f4c_A 415 DITVENVHFTYPSRP-DVPILRGMNLRVNAGQTVALVGSSGCGKSTIISLLLRYYD---VLKGKITIDGVDVRDINLEFL 490 (1321)
T ss_dssp CEEEEEEEECCSSST-TSCSEEEEEEEECTTCEEEEEECSSSCHHHHHHHHTTSSC---CSEEEEEETTEETTTSCHHHH
T ss_pred cEEEEEeeeeCCCCC-CCceeeceEEeecCCcEEEEEecCCCcHHHHHHHhccccc---cccCcccCCCccchhccHHHH
Confidence 399999999997542 3349999999999999999999999999999999999999 999999999987543
Q ss_pred --eEEEEecCCCCCCcccCCcccChHHHHHhcCCCCCccHHHHHHHHHHhh---------cCCCc----cCCCCCCcCCC
Q 021362 151 --VATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLR---------NQGSV----YAPSFDHGVGD 215 (313)
Q Consensus 151 --~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~~~~~~~~~~~~l~~l~---------~~~~~----~~~~LSgG~kq 215 (313)
.++||+|+++.+. -|++||+.++ .+. .+.+++.++++..+ .+.+. ....|||||||
T Consensus 491 r~~i~~v~Q~~~Lf~---~TI~eNI~~g-----~~~-~~~~~v~~a~~~a~l~~~i~~lp~G~~T~vGe~G~~LSGGQkQ 561 (1321)
T 4f4c_A 491 RKNVAVVSQEPALFN---CTIEENISLG-----KEG-ITREEMVAACKMANAEKFIKTLPNGYNTLVGDRGTQLSGGQKQ 561 (1321)
T ss_dssp HHHEEEECSSCCCCS---EEHHHHHHTT-----CTT-CCHHHHHHHHHHTTCHHHHHHSTTTTSSEESSSSCCCCHHHHH
T ss_pred hhcccccCCcceeeC---CchhHHHhhh-----ccc-chHHHHHHHHHHccchhHHHcCCCCCccEecCCCCCCCHHHHH
Confidence 5999999987654 5999999765 222 24556666665543 23333 23489999999
Q ss_pred cchhhhhhccCceEEEEcCCccccCh----hhHHHHHhhccc--eEEEEcChHHHHH--HHh----hcccccCCchHHHH
Q 021362 216 PVEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFDE--KWFIEVDLDTAMQ--RVL----KRHISTGKPPDVAK 283 (313)
Q Consensus 216 Rv~ia~al~~~ar~Li~d~~~lllDE----~~~~~l~~l~~~--~i~vtHd~~~~~~--rv~----griv~~G~~~ev~~ 283 (313)
|++||||+..++++|++|+++.-||. .+.+.|.++.+. .|+|||.+..+.. +|+ |++++.|+.+|+..
T Consensus 562 RiaiARAl~~~~~IliLDE~tSaLD~~te~~i~~~l~~~~~~~T~iiiaHrls~i~~aD~Iivl~~G~ive~Gth~eL~~ 641 (1321)
T 4f4c_A 562 RIAIARALVRNPKILLLDEATSALDAESEGIVQQALDKAAKGRTTIIIAHRLSTIRNADLIISCKNGQVVEVGDHRALMA 641 (1321)
T ss_dssp HHHHHHHHTTCCSEEEEESTTTTSCTTTHHHHHHHHHHHHTTSEEEEECSCTTTTTTCSEEEEEETTEEEEEECHHHHHT
T ss_pred HHHHHHHHccCCCEEEEecccccCCHHHHHHHHHHHHHHhCCCEEEEEcccHHHHHhCCEEEEeeCCeeeccCCHHHHHH
Confidence 99999999999999999999999998 455555555432 5799999998877 665 99999999999864
|
| >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=1.2e-30 Score=280.86 Aligned_cols=195 Identities=15% Similarity=0.113 Sum_probs=153.0
Q ss_pred EEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCCC-------
Q 021362 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPP------- 149 (313)
Q Consensus 77 ~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~~------- 149 (313)
-|+++|+++.|++.. ...+|+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.+..
T Consensus 387 ~i~~~~v~~~y~~~~-~~~vL~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~g~~~---~~~G~i~i~g~~i~~~~~~~~ 462 (1284)
T 3g5u_A 387 NLEFKNIHFSYPSRK-EVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYD---PLDGMVSIDGQDIRTINVRYL 462 (1284)
T ss_dssp CEEEEEEEECCSSTT-SCCSEEEEEEEECTTCEEEEECCSSSSHHHHHHHTTTSSC---CSEEEEEETTEEGGGSCHHHH
T ss_pred eEEEEEEEEEcCCCC-CCcceecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCeEEEECCEEHHhCCHHHH
Confidence 499999999997532 2239999999999999999999999999999999999999 99999999997643
Q ss_pred -CeEEEEecCCCCCCcccCCcccChHHHHHhcCCCCCccHHHHHHHHHH---------hhcCC----CccCCCCCCcCCC
Q 021362 150 -DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKN---------LRNQG----SVYAPSFDHGVGD 215 (313)
Q Consensus 150 -~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~~~~~~~~~~~~l~~---------l~~~~----~~~~~~LSgG~kq 215 (313)
+.++||+|++..+. .|++||+.++.. . ...+.+.+.++. +..+. .....+|||||||
T Consensus 463 r~~i~~v~Q~~~l~~---~ti~eNi~~g~~-----~-~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~Q 533 (1284)
T 3g5u_A 463 REIIGVVSQEPVLFA---TTIAENIRYGRE-----D-VTMDEIEKAVKEANAYDFIMKLPHQFDTLVGERGAQLSGGQKQ 533 (1284)
T ss_dssp HHHEEEECSSCCCCS---SCHHHHHHHHCS-----S-CCHHHHHHHHHHTTCHHHHHHSTTGGGCCCSSSSCSSCHHHHH
T ss_pred HhheEEEcCCCccCC---ccHHHHHhcCCC-----C-CCHHHHHHHHHHhCcHHHHHhccccccccccCCCCccCHHHHH
Confidence 35999999976543 499999987631 1 123334443333 22111 2344599999999
Q ss_pred cchhhhhhccCceEEEEcCCccccChh----hHHHHHhhcc--ceEEEEcChHHHHH--HHh----hcccccCCchHHHH
Q 021362 216 PVEDDILVGLQHKVVIVDGNYLFLDGG----VWKDVSSMFD--EKWFIEVDLDTAMQ--RVL----KRHISTGKPPDVAK 283 (313)
Q Consensus 216 Rv~ia~al~~~ar~Li~d~~~lllDE~----~~~~l~~l~~--~~i~vtHd~~~~~~--rv~----griv~~G~~~ev~~ 283 (313)
|++||+|++.++++|++|+++.-||.+ +.+.++.+.+ ..++|||+++.+.. |++ |++++.|+++++..
T Consensus 534 riaiARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~i~~~d~i~vl~~G~i~~~g~~~~l~~ 613 (1284)
T 3g5u_A 534 RIAIARALVRNPKILLLDEATSALDTESEAVVQAALDKAREGRTTIVIAHRLSTVRNADVIAGFDGGVIVEQGNHDELMR 613 (1284)
T ss_dssp HHHHHHHHHHCCSEEEEESTTCSSCHHHHHHHHHHHHHHHTTSEEEEECSCHHHHTTCSEEEECSSSCCCCEECHHHHHH
T ss_pred HHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHcCCEEEEEECCEEEEECCHHHHHh
Confidence 999999999999999999999999994 3344444332 25799999999877 555 99999999999865
Q ss_pred H
Q 021362 284 W 284 (313)
Q Consensus 284 ~ 284 (313)
.
T Consensus 614 ~ 614 (1284)
T 3g5u_A 614 E 614 (1284)
T ss_dssp T
T ss_pred C
Confidence 3
|
| >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=5.8e-31 Score=283.46 Aligned_cols=197 Identities=14% Similarity=0.096 Sum_probs=154.9
Q ss_pred EEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCCC-------
Q 021362 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPP------- 149 (313)
Q Consensus 77 ~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~~------- 149 (313)
.|+++||++.|++.. ...+|+|+||+|++||++||+||||||||||+++|+|+++ |++|+|.++|.+..
T Consensus 1030 ~i~~~~v~~~y~~~~-~~~~l~~vsl~i~~Ge~v~ivG~sGsGKSTl~~~l~g~~~---p~~G~I~i~g~~i~~~~~~~~ 1105 (1284)
T 3g5u_A 1030 NVQFSGVVFNYPTRP-SIPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYD---PMAGSVFLDGKEIKQLNVQWL 1105 (1284)
T ss_dssp CEEEEEEEBCCSCGG-GCCSBSSCCEEECSSSEEEEECSSSTTHHHHHHHHTTSSC---CSEEEEESSSSCTTSSCHHHH
T ss_pred cEEEEEEEEECCCCC-CCeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCcC---CCCCEEEECCEEcccCCHHHH
Confidence 499999999997542 2238999999999999999999999999999999999999 99999999998743
Q ss_pred -CeEEEEecCCCCCCcccCCcccChHHHHHhcCCCCCccHHHHHHHHHHhh---------cCCC----ccCCCCCCcCCC
Q 021362 150 -DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLR---------NQGS----VYAPSFDHGVGD 215 (313)
Q Consensus 150 -~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~~~~~~~~~~~~l~~l~---------~~~~----~~~~~LSgG~kq 215 (313)
+.++||+||+..+ . .|++||+.++... .....+.+.+.++..+ .+.+ ....+|||||||
T Consensus 1106 r~~i~~v~Q~~~l~-~--~ti~eNi~~~~~~----~~~~~~~i~~~~~~~~~~~~i~~l~~gldt~vge~G~~LSgGq~Q 1178 (1284)
T 3g5u_A 1106 RAQLGIVSQEPILF-D--CSIAENIAYGDNS----RVVSYEEIVRAAKEANIHQFIDSLPDKYNTRVGDKGTQLSGGQKQ 1178 (1284)
T ss_dssp TTSCEEEESSCCCC-S--SBHHHHHTCCCSS----CCCCHHHHHHHHHHHTCHHHHSSTTTGGGCBCSTTSCSSCHHHHH
T ss_pred HhceEEECCCCccc-c--ccHHHHHhccCCC----CCCCHHHHHHHHHHhCcHHHHHhCccccccccCCCCCccCHHHHH
Confidence 4599999997543 2 6999999764211 1123344555554433 1111 133489999999
Q ss_pred cchhhhhhccCceEEEEcCCccccCh----hhHHHHHhhcc--ceEEEEcChHHHHH--HHh----hcccccCCchHHHH
Q 021362 216 PVEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFD--EKWFIEVDLDTAMQ--RVL----KRHISTGKPPDVAK 283 (313)
Q Consensus 216 Rv~ia~al~~~ar~Li~d~~~lllDE----~~~~~l~~l~~--~~i~vtHd~~~~~~--rv~----griv~~G~~~ev~~ 283 (313)
|++||+|++.++++|++|+++..||. .+.+.|++..+ ..++||||++++.. |++ |++++.|+++++..
T Consensus 1179 rv~iARal~~~p~iLiLDEpTs~lD~~~~~~i~~~l~~~~~~~tvi~isH~l~~i~~~dri~vl~~G~i~~~g~~~~l~~ 1258 (1284)
T 3g5u_A 1179 RIAIARALVRQPHILLLDEATSALDTESEKVVQEALDKAREGRTCIVIAHRLSTIQNADLIVVIQNGKVKEHGTHQQLLA 1258 (1284)
T ss_dssp HHHHHHHHHHCCSSEEEESCSSSCCHHHHHHHHHHHHHHSSSSCEEEECSCTTGGGSCSEEEEEETBEEEEEECHHHHHH
T ss_pred HHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHhCCCCEEEEEecCHHHHHcCCEEEEEECCEEEEECCHHHHHh
Confidence 99999999999999999999999999 44555555433 25799999999866 665 99999999999875
Q ss_pred H
Q 021362 284 W 284 (313)
Q Consensus 284 ~ 284 (313)
+
T Consensus 1259 ~ 1259 (1284)
T 3g5u_A 1259 Q 1259 (1284)
T ss_dssp S
T ss_pred C
Confidence 4
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A | Back alignment and structure |
|---|
Probab=99.96 E-value=2.5e-30 Score=268.58 Aligned_cols=194 Identities=13% Similarity=0.131 Sum_probs=140.4
Q ss_pred cEEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCCCCeEEEE
Q 021362 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVL 155 (313)
Q Consensus 76 ~~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~~~~i~~v 155 (313)
++|+++|+++.|++.. ..+|+|+||+|++|+++||+||||||||||+|+|+|+++ |++|+|++++. ..++|+
T Consensus 670 ~mL~v~nLs~~Y~g~~--~~iL~dVSl~I~~GeivaIiGpNGSGKSTLLklLaGll~---P~sG~I~~~~~---~~I~yv 741 (986)
T 2iw3_A 670 AIVKVTNMEFQYPGTS--KPQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELL---PTSGEVYTHEN---CRIAYI 741 (986)
T ss_dssp EEEEEEEEEECCTTCS--SCSEEEEEEEEETTCEEEECSCCCHHHHHHHHHHTTSSC---CSEEEEEECTT---CCEEEE
T ss_pred ceEEEEeeEEEeCCCC--ceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCceEEEEcCc---cceEee
Confidence 4799999999997521 128999999999999999999999999999999999999 99999999863 247888
Q ss_pred ecCCCCC-----C-------------------------------------------------------------------
Q 021362 156 PMDGFHL-----Y------------------------------------------------------------------- 163 (313)
Q Consensus 156 ~qd~~~~-----~------------------------------------------------------------------- 163 (313)
+|+.+.. .
T Consensus 742 ~Q~~~~~l~~~~~~t~~e~i~~~~q~g~d~~~~~~~~~~l~~ed~~~~~~~~~~~g~~r~~~~i~~r~~~~~~~~~e~~~ 821 (986)
T 2iw3_A 742 KQHAFAHIESHLDKTPSEYIQWRFQTGEDRETMDRANRQINENDAEAMNKIFKIEGTPRRIAGIHSRRKFKNTYEYECSF 821 (986)
T ss_dssp CHHHHHHGGGCTTSCHHHHHHHHTTTSSCTTTTTTTSCCCCSSCSSGGGCCEEETTEEEEEEEEEEEEEETTEEEEEEEE
T ss_pred ccchhhhhhcccccCHHHHHHHHhhccchhhhhhhhhhccchhhhhhhhcccccccchhhhhhhhhhhhhcccchhhhhh
Confidence 8763210 0
Q ss_pred ------------cccCCcccChHHHH-------------------HhcCCCCCccHHHHHHHHHHhhcC----CCccCCC
Q 021362 164 ------------LSQLDAMEDPKEAH-------------------ARRGAPWTFNPLLLLNCLKNLRNQ----GSVYAPS 208 (313)
Q Consensus 164 ------------~~~ltv~e~~~~~~-------------------~~~~~~~~~~~~~~~~~l~~l~~~----~~~~~~~ 208 (313)
...+++.+|+.+.. ...+.......+++.++|+.++.. .+.++.+
T Consensus 822 sv~ENi~l~~~~~~~lt~~en~~~~~~~l~~~~~~~v~~~d~~~~~~~g~~~~~~~~~i~~~Le~lGL~~~~~~~~~~~~ 901 (986)
T 2iw3_A 822 LLGENIGMKSERWVPMMSVDNAWIPRGELVESHSKMVAEVDMKEALASGQFRPLTRKEIEEHCSMLGLDPEIVSHSRIRG 901 (986)
T ss_dssp EEEESTTSTTCEEEECCGGGCEEEEGGGTHHHHHHHHHHHHHHHHHHTTCCCCCCHHHHHHHHHHTTCCHHHHHHSCGGG
T ss_pred hhhhhhhcccccccccchhhhhhhhhHHHhhhHhhhhhhhhhhhhhhhcccchhHHHHHHHHHHHcCCCchhhcCCCccc
Confidence 00112222211100 001222233456788899999853 2456779
Q ss_pred CCCcCCCcchhhhhhccCceEEEEcCCccccChh----hHHHHHhhccceEEEEcChHHHHH---HHh----hcccccCC
Q 021362 209 FDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGG----VWKDVSSMFDEKWFIEVDLDTAMQ---RVL----KRHISTGK 277 (313)
Q Consensus 209 LSgG~kqRv~ia~al~~~ar~Li~d~~~lllDE~----~~~~l~~l~~~~i~vtHd~~~~~~---rv~----griv~~G~ 277 (313)
|||||||||+||++++.++++|++|+|+..||.. +++.|+++...+|+||||++++.. |++ |+++..|.
T Consensus 902 LSGGQkQRVaLArAL~~~P~LLLLDEPT~gLD~~s~~~L~~~L~~~g~tVIiISHD~e~v~~l~DrVivL~~G~Iv~~G~ 981 (986)
T 2iw3_A 902 LSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKEFEGGVIIITHSAEFTKNLTEEVWAVKDGRMTPSGH 981 (986)
T ss_dssp CCHHHHHHHHHHHHHTTCCSEEEEECGGGTCCHHHHHHHHHHHHSCSSEEEEECSCHHHHTTTCCEEECCBTTBCCC---
T ss_pred cCHHHHHHHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHhCCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCC
Confidence 9999999999999999999999999999999994 444444443335799999999865 444 77776663
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.95 E-value=5.9e-29 Score=248.98 Aligned_cols=187 Identities=18% Similarity=0.213 Sum_probs=147.5
Q ss_pred ccceEEccccccccccccccccccCCC-----cEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCCCCeEEEE
Q 021362 81 RCMDEVYDALAQRLLPTSALASNVNVK-----HIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVL 155 (313)
Q Consensus 81 ~~l~~~y~~~~~~~~~L~~vsl~i~~G-----eiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~~~~i~~v 155 (313)
.++.+.|++.. .+++++||++.+| |++||+||||||||||+++|+|+++ |++|+.. ....++|+
T Consensus 350 ~~~~~~y~~~~---~~l~~vsl~v~~G~~~~GEiv~iiG~NGsGKSTLlk~l~Gl~~---p~~G~~~-----~~~~i~~~ 418 (608)
T 3j16_B 350 ASRAFSYPSLK---KTQGDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALK---PDEGQDI-----PKLNVSMK 418 (608)
T ss_dssp SSSCCEECCEE---EECSSCEEEECCEECCTTCEEEEESCTTSSHHHHHHHHHTSSC---CSBCCCC-----CSCCEEEE
T ss_pred cceeEEecCcc---cccCceEEEEecCccccceEEEEECCCCCcHHHHHHHHhcCCC---CCCCcCc-----cCCcEEEe
Confidence 67788886532 2789999999998 7899999999999999999999999 9999742 12358999
Q ss_pred ecCCCCCCcccCCcccChHHHHHhcCCCCCccHHHHHHHHHHhh--cCCCccCCCCCCcCCCcchhhhhhccCceEEEEc
Q 021362 156 PMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLR--NQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVD 233 (313)
Q Consensus 156 ~qd~~~~~~~~ltv~e~~~~~~~~~~~~~~~~~~~~~~~l~~l~--~~~~~~~~~LSgG~kqRv~ia~al~~~ar~Li~d 233 (313)
+|+....+ ..|+.+++... ..+ .......+.++++.++ ...++++.+|||||||||+||++++.++++|++|
T Consensus 419 ~q~~~~~~--~~tv~e~~~~~--~~~--~~~~~~~~~~~l~~l~l~~~~~~~~~~LSGGqkQRv~iAraL~~~p~lLlLD 492 (608)
T 3j16_B 419 PQKIAPKF--PGTVRQLFFKK--IRG--QFLNPQFQTDVVKPLRIDDIIDQEVQHLSGGELQRVAIVLALGIPADIYLID 492 (608)
T ss_dssp CSSCCCCC--CSBHHHHHHHH--CSS--TTTSHHHHHHTHHHHTSTTTSSSBSSSCCHHHHHHHHHHHHTTSCCSEEEEC
T ss_pred cccccccC--CccHHHHHHHH--hhc--ccccHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEE
Confidence 99854333 35788765432 221 1123456678888888 3456788899999999999999999999999999
Q ss_pred CCccccCh----hhHHHHHhhcc----ceEEEEcChHHHHH---HHh------hcccccCCchHHHHH
Q 021362 234 GNYLFLDG----GVWKDVSSMFD----EKWFIEVDLDTAMQ---RVL------KRHISTGKPPDVAKW 284 (313)
Q Consensus 234 ~~~lllDE----~~~~~l~~l~~----~~i~vtHd~~~~~~---rv~------griv~~G~~~ev~~~ 284 (313)
+|+..||. .+++.|+++.. ..++||||++++.. |++ |++++.|+|+++...
T Consensus 493 EPT~gLD~~~~~~i~~ll~~l~~~~g~tviivtHdl~~~~~~aDrvivl~~~~g~~~~~g~p~~~~~~ 560 (608)
T 3j16_B 493 EPSAYLDSEQRIICSKVIRRFILHNKKTAFIVEHDFIMATYLADKVIVFEGIPSKNAHARAPESLLTG 560 (608)
T ss_dssp CTTTTCCHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHHHHHCSEEEECEEETTTEEECCCCEEHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEeCCCCeEEecCChHHHhhh
Confidence 99999998 56666666642 24799999999987 655 688899999998765
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* | Back alignment and structure |
|---|
Probab=99.95 E-value=3.6e-29 Score=250.80 Aligned_cols=176 Identities=16% Similarity=0.048 Sum_probs=135.2
Q ss_pred ccEEEE--------ccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCcee-----
Q 021362 75 IPVVEA--------RCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS----- 141 (313)
Q Consensus 75 m~~l~~--------~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i----- 141 (313)
+.+|++ +||++.|++.. .+|+++| +|++||++||+||||||||||+|+|+|+++ |++|++
T Consensus 81 ~~~i~i~~l~~~~~~~ls~~yg~~~---~~l~~vs-~i~~Ge~~~LiG~NGsGKSTLlkiL~Gll~---p~~G~~~~~~~ 153 (607)
T 3bk7_A 81 FNAISIVNLPEQLDEDCVHRYGVNA---FVLYRLP-IVKDGMVVGIVGPNGTGKTTAVKILAGQLI---PNLCEDNDSWD 153 (607)
T ss_dssp SCCCEEEEECTTGGGSEEEECSTTC---CEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHTTSSC---CCTTTTCCCHH
T ss_pred cceEEEecCCccccCCeEEEECCCC---eeeCCCC-CCCCCCEEEEECCCCChHHHHHHHHhCCCC---CCCCccccccc
Confidence 446888 99999997641 2899999 999999999999999999999999999999 999996
Q ss_pred ----ecCCCCC----------CCeEEEEecCCCCCCcc-cCCcccChHHHHHhcCCCCCccHHHHHHHHHHhhc--CCCc
Q 021362 142 ----FDSQVKP----------PDVATVLPMDGFHLYLS-QLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN--QGSV 204 (313)
Q Consensus 142 ----~~~g~~~----------~~~i~~v~qd~~~~~~~-~ltv~e~~~~~~~~~~~~~~~~~~~~~~~l~~l~~--~~~~ 204 (313)
.++|.+. ...+++++|.....+.. ..|+.|++.. . ...+++.++++.++. ..++
T Consensus 154 ~~~~~~~G~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~tv~e~l~~----~-----~~~~~~~~~L~~lgL~~~~~~ 224 (607)
T 3bk7_A 154 NVIRAFRGNELQNYFERLKNGEIRPVVKPQYVDLLPKAVKGKVRELLKK----V-----DEVGKFEEVVKELELENVLDR 224 (607)
T ss_dssp HHHHHTTTSTHHHHHHHHHHTSCCCEEECSCGGGGGGTCCSBHHHHHHH----T-----CCSSCHHHHHHHTTCTTGGGS
T ss_pred hhhheeCCEehhhhhhhhhhhhcceEEeechhhhchhhccccHHHHhhh----h-----HHHHHHHHHHHHcCCCchhCC
Confidence 4566542 12467788763322210 1256665532 1 112456788888884 3466
Q ss_pred cCCCCCCcCCCcchhhhhhccCceEEEEcCCccccCh----hhHHHHHhhcc---ceEEEEcChHHHHH
Q 021362 205 YAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFD---EKWFIEVDLDTAMQ 266 (313)
Q Consensus 205 ~~~~LSgG~kqRv~ia~al~~~ar~Li~d~~~lllDE----~~~~~l~~l~~---~~i~vtHd~~~~~~ 266 (313)
++.+|||||||||+||+|++.++++|++|+|+..||. .+++.|+++.+ ..|+||||++++..
T Consensus 225 ~~~~LSGGekQRvaIAraL~~~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~~g~tvIivsHdl~~~~~ 293 (607)
T 3bk7_A 225 ELHQLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLANEGKAVLVVEHDLAVLDY 293 (607)
T ss_dssp BGGGCCHHHHHHHHHHHHHHSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHH
T ss_pred ChhhCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEecChHHHHh
Confidence 7779999999999999999999999999999999999 45666666643 24799999998876
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=99.95 E-value=1.7e-28 Score=243.05 Aligned_cols=173 Identities=17% Similarity=0.072 Sum_probs=130.5
Q ss_pred EEE-ccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCcee---------ecCCCC
Q 021362 78 VEA-RCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS---------FDSQVK 147 (313)
Q Consensus 78 l~~-~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i---------~~~g~~ 147 (313)
.++ +||+|.|++.. .+|+++| +|++||++||+||||||||||+|+|+|+++ |++|++ .++|.+
T Consensus 21 ~~~~~~ls~~yg~~~---~~l~~vs-~i~~Ge~~~LvG~NGaGKSTLlk~l~Gl~~---p~~G~~~~~~~~~~~~~~g~~ 93 (538)
T 1yqt_A 21 EQLEEDCVHRYGVNA---FVLYRLP-VVKEGMVVGIVGPNGTGKSTAVKILAGQLI---PNLCGDNDSWDGVIRAFRGNE 93 (538)
T ss_dssp ---CCCEEEECSTTC---CEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTSSC---CCTTTTCCSHHHHHHHTTTST
T ss_pred hhHhcCcEEEECCcc---ccccCcC-cCCCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCCccCcchhhhHHhhCCcc
Confidence 444 69999998641 2899999 999999999999999999999999999999 999996 456644
Q ss_pred C----------CCeEEEEecCCCCCCcc-cCCcccChHHHHHhcCCCCCccHHHHHHHHHHhhc--CCCccCCCCCCcCC
Q 021362 148 P----------PDVATVLPMDGFHLYLS-QLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVG 214 (313)
Q Consensus 148 ~----------~~~i~~v~qd~~~~~~~-~ltv~e~~~~~~~~~~~~~~~~~~~~~~~l~~l~~--~~~~~~~~LSgG~k 214 (313)
. ...+++++|.....+.. ..++.+++.. .. ..+++.++|+.++. ..++++.+||||||
T Consensus 94 ~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~v~e~~~~----~~-----~~~~~~~~l~~lgl~~~~~~~~~~LSgGek 164 (538)
T 1yqt_A 94 LQNYFEKLKNGEIRPVVKPQYVDLIPKAVKGKVIELLKK----AD-----ETGKLEEVVKALELENVLEREIQHLSGGEL 164 (538)
T ss_dssp HHHHHHHHHTTSCCCEEECSCGGGSGGGCCSBHHHHHHH----HC-----SSSCHHHHHHHTTCTTTTTSBGGGCCHHHH
T ss_pred HHHHHHHHHHHhhhhhhhhhhhhhcchhhhccHHHHHhh----hh-----HHHHHHHHHHHcCCChhhhCChhhCCHHHH
Confidence 1 12467888864322210 0245554431 11 12346788888884 35667789999999
Q ss_pred CcchhhhhhccCceEEEEcCCccccChh----hHHHHHhhccc---eEEEEcChHHHHH
Q 021362 215 DPVEDDILVGLQHKVVIVDGNYLFLDGG----VWKDVSSMFDE---KWFIEVDLDTAMQ 266 (313)
Q Consensus 215 qRv~ia~al~~~ar~Li~d~~~lllDE~----~~~~l~~l~~~---~i~vtHd~~~~~~ 266 (313)
|||+||+|++.++++|++|+|+..||.. +++.|+++.+. .|+||||++++..
T Consensus 165 QRv~iAraL~~~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~~g~tvi~vsHd~~~~~~ 223 (538)
T 1yqt_A 165 QRVAIAAALLRNATFYFFDEPSSYLDIRQRLNAARAIRRLSEEGKSVLVVEHDLAVLDY 223 (538)
T ss_dssp HHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHH
T ss_pred HHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHH
Confidence 9999999999999999999999999994 66666666432 4799999998876
|
| >3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus} | Back alignment and structure |
|---|
Probab=99.94 E-value=6.1e-28 Score=245.16 Aligned_cols=185 Identities=17% Similarity=0.132 Sum_probs=113.9
Q ss_pred cccccccccCCCcEEEEECCCCCcHHHHH---------------------HHHHHHhcccCCCCc-------eeecCCCC
Q 021362 96 PTSALASNVNVKHIVGLAGPPGAGKSTLA---------------------AEVVRRINKIWPQKA-------SSFDSQVK 147 (313)
Q Consensus 96 ~L~~vsl~i~~Geiv~l~GpNGsGKSTLl---------------------k~l~gl~~~~~p~~G-------~i~~~g~~ 147 (313)
+|+||||+|++||++||+||||||||||+ +++.|+.. |+.| .|.+++..
T Consensus 33 ~L~~vsl~i~~Ge~~~liGpNGaGKSTLl~~~~~~~~~~~~~~~l~~~~~~~l~~l~~---~~~~~i~~~~~~i~~~~~~ 109 (670)
T 3ux8_A 33 NLKNIDVEIPRGKLVVLTGLSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGQMEK---PDVDAIEGLSPAISIDQKT 109 (670)
T ss_dssp TCCSEEEEEETTSEEEEECSTTSSHHHHHTTTHHHHHHHHHHTC-----------------CCCSEEESCCCEEEESSCC
T ss_pred ceeccEEEECCCCEEEEECCCCCCHHHHhcccccccccccccccchhhhhhhhccccc---CCccceeccccceEecCch
Confidence 89999999999999999999999999998 88999988 8854 44555543
Q ss_pred C----CCeEEEEecCCCCC-----------------CcccCCcccChHHHHHhc--CCCCCccH------HHHHHHHHHh
Q 021362 148 P----PDVATVLPMDGFHL-----------------YLSQLDAMEDPKEAHARR--GAPWTFNP------LLLLNCLKNL 198 (313)
Q Consensus 148 ~----~~~i~~v~qd~~~~-----------------~~~~ltv~e~~~~~~~~~--~~~~~~~~------~~~~~~l~~l 198 (313)
. ...+++++|....+ ....+|+.||+.+..... ........ ....++++.+
T Consensus 110 ~~~~~~~~ig~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 189 (670)
T 3ux8_A 110 TSRNPRSTVGTVTEIYDYLRLLFARIGRLVGGKHIGEVTAMSVTEALAFFDGLELTEKEAQIARLILREIRDRLGFLQNV 189 (670)
T ss_dssp -----CCBHHHHTTCC-------------------------CC--------------------------CHHHHHHHHHT
T ss_pred hhccchhceeeeechhhhHHHHHhhhcccccccccccccCCcHHHHHHHhhccccchhhhHHHHHHHHHHHHHHHHHHHc
Confidence 1 22344444432111 112478999987743211 10000000 1112346667
Q ss_pred hcC---CCccCCCCCCcCCCcchhhhhhccCce--EEEEcCCccccCh----hhHHHHHhhccc---eEEEEcChHHHHH
Q 021362 199 RNQ---GSVYAPSFDHGVGDPVEDDILVGLQHK--VVIVDGNYLFLDG----GVWKDVSSMFDE---KWFIEVDLDTAMQ 266 (313)
Q Consensus 199 ~~~---~~~~~~~LSgG~kqRv~ia~al~~~ar--~Li~d~~~lllDE----~~~~~l~~l~~~---~i~vtHd~~~~~~ 266 (313)
+.. .++++.+|||||||||+||+|++.+++ +|++|+|+..||+ .+++.|+++.++ .|+||||++++..
T Consensus 190 gL~~~~~~~~~~~LSGGe~QRv~iArAL~~~p~~~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~~~~~ 269 (670)
T 3ux8_A 190 GLDYLTLSRSAGTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDLGNTLIVVEHDEDTMLA 269 (670)
T ss_dssp TCTTCCTTCBGGGSCHHHHHHHHHHHHHHTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHHTTCEEEEECCCHHHHHH
T ss_pred CCchhhhcCCcccCCHHHHHHHHHHHHHhhCCCCCEEEEECCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHhh
Confidence 643 467788999999999999999999988 9999999999999 455556555432 4799999998765
Q ss_pred --HHh----------hcccccCCchHHHH
Q 021362 267 --RVL----------KRHISTGKPPDVAK 283 (313)
Q Consensus 267 --rv~----------griv~~G~~~ev~~ 283 (313)
|++ |++++.|+++++..
T Consensus 270 ~d~ii~l~~g~~~~~G~i~~~g~~~~~~~ 298 (670)
T 3ux8_A 270 ADYLIDIGPGAGIHGGEVVAAGTPEEVMN 298 (670)
T ss_dssp CSEEEEECSSSGGGCCSEEEEECHHHHHT
T ss_pred CCEEEEecccccccCCEEEEecCHHHHhc
Confidence 442 68888999988754
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A | Back alignment and structure |
|---|
Probab=99.94 E-value=2.2e-27 Score=246.62 Aligned_cols=183 Identities=14% Similarity=0.044 Sum_probs=141.0
Q ss_pred EEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCC--CCeEEE
Q 021362 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP--PDVATV 154 (313)
Q Consensus 77 ~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~--~~~i~~ 154 (313)
.|...|+++.|++.. +|+|+||+|++|++++|+||||||||||+|+|+| |+| +|.+. ...++|
T Consensus 435 ~L~~~~ls~~yg~~~----iL~~vsl~I~~Ge~v~LiGpNGsGKSTLLk~Lag---------G~i--~g~~~~~~~~~~~ 499 (986)
T 2iw3_A 435 DLCNCEFSLAYGAKI----LLNKTQLRLKRARRYGICGPNGCGKSTLMRAIAN---------GQV--DGFPTQEECRTVY 499 (986)
T ss_dssp EEEEEEEEEEETTEE----EEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHH---------TCS--TTCCCTTTSCEEE
T ss_pred eeEEeeEEEEECCEE----eEecceEEEcCCCEEEEECCCCCCHHHHHHHHhC---------CCc--CCCccccceeEEE
Confidence 466669999998876 9999999999999999999999999999999996 222 22211 123677
Q ss_pred EecCCCCCCcccCCcccChHHHHHhcCCCCCccHHHHHHHHHHhhcC---CCccCCCCCCcCCCcchhhhhhccCceEEE
Q 021362 155 LPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ---GSVYAPSFDHGVGDPVEDDILVGLQHKVVI 231 (313)
Q Consensus 155 v~qd~~~~~~~~ltv~e~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~---~~~~~~~LSgG~kqRv~ia~al~~~ar~Li 231 (313)
++|+...++ ..+|+.+|+.+ ...+ . .+++.++|+.++.. .++++.+||||||||++||++++.++++|+
T Consensus 500 v~q~~~~~~-~~ltv~e~l~~--~~~~----~-~~~v~~~L~~lgL~~~~~~~~~~~LSGGqkQRvaLArAL~~~P~lLL 571 (986)
T 2iw3_A 500 VEHDIDGTH-SDTSVLDFVFE--SGVG----T-KEAIKDKLIEFGFTDEMIAMPISALSGGWKMKLALARAVLRNADILL 571 (986)
T ss_dssp TTCCCCCCC-TTSBHHHHHHT--TCSS----C-HHHHHHHHHHTTCCHHHHHSBGGGCCHHHHHHHHHHHHHHTTCSEEE
T ss_pred Ecccccccc-cCCcHHHHHHH--hhcC----H-HHHHHHHHHHcCCChhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEE
Confidence 777642222 25799998865 1112 1 56788899999853 356778999999999999999999999999
Q ss_pred EcCCccccCh----hhHHHHHhhcc-ceEEEEcChHHHHH---HHh----hccc-ccCCchHHHH
Q 021362 232 VDGNYLFLDG----GVWKDVSSMFD-EKWFIEVDLDTAMQ---RVL----KRHI-STGKPPDVAK 283 (313)
Q Consensus 232 ~d~~~lllDE----~~~~~l~~l~~-~~i~vtHd~~~~~~---rv~----griv-~~G~~~ev~~ 283 (313)
+|+|+..||. .+++.|++ .. ..|+||||++++.. |++ |+++ ..|++.++..
T Consensus 572 LDEPTs~LD~~~~~~l~~~L~~-~g~tvIivSHdl~~l~~~adrii~L~~G~iv~~~G~~~e~~~ 635 (986)
T 2iw3_A 572 LDEPTNHLDTVNVAWLVNYLNT-CGITSITISHDSVFLDNVCEYIINYEGLKLRKYKGNFTEFVK 635 (986)
T ss_dssp EESTTTTCCHHHHHHHHHHHHH-SCSEEEEECSCHHHHHHHCSEEEEEETTEEEEEESCHHHHHH
T ss_pred EECCccCCCHHHHHHHHHHHHh-CCCEEEEEECCHHHHHHhCCEEEEEECCeeecCCCCHHHHHh
Confidence 9999999999 44555555 22 24799999999986 555 8886 5799888764
|
| >2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=3.5e-26 Score=204.61 Aligned_cols=197 Identities=21% Similarity=0.297 Sum_probs=133.0
Q ss_pred cccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCCCCeEEEEecCCCCCCcccCCcccChHH
Q 021362 96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKE 175 (313)
Q Consensus 96 ~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~~~~i~~v~qd~~~~~~~~ltv~e~~~~ 175 (313)
+|+|+||++++|+++||+||||||||||+++|+|++ |.+.++ ...+.++|++|+.+ +. .+++.+++.+
T Consensus 14 ~l~~isl~i~~g~iigI~G~~GsGKSTl~k~L~~~l-------G~~~~~--~~~~~i~~v~~d~~--~~-~l~~~~~~~~ 81 (245)
T 2jeo_A 14 GTENLYFQSMRPFLIGVSGGTASGKSTVCEKIMELL-------GQNEVE--QRQRKVVILSQDRF--YK-VLTAEQKAKA 81 (245)
T ss_dssp ---------CCSEEEEEECSTTSSHHHHHHHHHHHH-------TGGGSC--GGGCSEEEEEGGGG--BC-CCCHHHHHHH
T ss_pred eecceeccCCCCEEEEEECCCCCCHHHHHHHHHHHh-------chhccc--ccCCceEEEeCCcC--cc-ccCHhHhhhh
Confidence 999999999999999999999999999999999987 334333 23456899999953 22 4788888766
Q ss_pred HHHhcCC--CCCccHHHHHHHHHHhhcCCCccCCCCCCcCCCcchhhhhhccCceEEEEcCCccccChhhHHHHHhhccc
Q 021362 176 AHARRGA--PWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (313)
Q Consensus 176 ~~~~~~~--~~~~~~~~~~~~l~~l~~~~~~~~~~LSgG~kqRv~ia~al~~~ar~Li~d~~~lllDE~~~~~l~~l~~~ 253 (313)
....++. +...+.+.+.+.|+.+......+++.||+||+||+++ ++++.+++++++|++.++.++ .+.++.+.
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~L~~l~~~~~~~~~~ls~g~~~r~~~-~~~~~~~~~lilDg~~~~~~~----~l~~~~~~ 156 (245)
T 2jeo_A 82 LKGQYNFDHPDAFDNDLMHRTLKNIVEGKTVEVPTYDFVTHSRLPE-TTVVYPADVVLFEGILVFYSQ----EIRDMFHL 156 (245)
T ss_dssp HTTCCCTTSGGGBCHHHHHHHHHHHHTTCCEEECCEETTTTEECSS-CEEECCCSEEEEECTTTTTSH----HHHTTCSE
T ss_pred hccCCCCCCcccccHHHHHHHHHHHHCCCCeecccccccccCccCc-eEEecCCCEEEEeCccccccH----HHHHhcCe
Confidence 5433322 2234566677788877777778889999999999988 467777888888887777774 35556666
Q ss_pred eE-EEEcChHHHHHHHhhcccccCCchHHHHHHHHhcCCchhH-HhhhcccCccEEeec
Q 021362 254 KW-FIEVDLDTAMQRVLKRHISTGKPPDVAKWRIEYNDRPNAE-LIMKSKKNADLVIKS 310 (313)
Q Consensus 254 ~i-~vtHd~~~~~~rv~griv~~G~~~ev~~~~~~~~~~~~~~-~i~~~~~~ad~ii~~ 310 (313)
.| +++|+.. ...|.+.|.+..|...+-+..+|...+.+..+ ++.|.+..||+||++
T Consensus 157 ~i~v~th~~~-~~~r~~~r~~~~G~~~e~~~~~~~~~~~~~~~~~i~p~~~~aD~vi~~ 214 (245)
T 2jeo_A 157 RLFVDTDSDV-RLSRRVLRDVRRGRDLEQILTQYTTFVKPAFEEFCLPTKKYADVIIPR 214 (245)
T ss_dssp EEEEECCHHH-HHHHHHHHHTC---CHHHHHHHHHHTHHHHHHHHTGGGGGGCSEEEES
T ss_pred EEEEECCHHH-HHHHHHHHHHHcCCCHHHHHHHHHHhhhHhHHHhCCcchhcceEEEcC
Confidence 65 5566533 33344444336676666666667776666655 889999999999943
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.93 E-value=1.7e-26 Score=231.17 Aligned_cols=175 Identities=15% Similarity=0.083 Sum_probs=122.5
Q ss_pred cceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCcee-----------ecCCCCCC-
Q 021362 82 CMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-----------FDSQVKPP- 149 (313)
Q Consensus 82 ~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i-----------~~~g~~~~- 149 (313)
+++++|+... ..|++++ .+++||++||+||||||||||+|+|+|+++ |++|+| .+.|....
T Consensus 82 ~~~~~Y~~~~---~~l~~l~-~~~~Gei~~LvGpNGaGKSTLLkiL~Gll~---P~~G~i~~~~~~~~~~~~~~g~~~~~ 154 (608)
T 3j16_B 82 HVTHRYSANS---FKLHRLP-TPRPGQVLGLVGTNGIGKSTALKILAGKQK---PNLGRFDDPPEWQEIIKYFRGSELQN 154 (608)
T ss_dssp TEEEECSTTS---CEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTSSC---CCTTTTCCSSCHHHHHHHTTTSTHHH
T ss_pred CeEEEECCCc---eeecCCC-CCCCCCEEEEECCCCChHHHHHHHHhcCCC---CCCceEecccchhhhhheecChhhhh
Confidence 6788887543 1566666 689999999999999999999999999999 999998 34443210
Q ss_pred -------Ce--EEEEecCCCCCCcccCCcccChHHHHHhcCCCCCccHHHHHHHHHHhhc--CCCccCCCCCCcCCCcch
Q 021362 150 -------DV--ATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVE 218 (313)
Q Consensus 150 -------~~--i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~~~~~~~~~~~~l~~l~~--~~~~~~~~LSgG~kqRv~ 218 (313)
+. ..+.+|.....+ ..+..+................+++.++++.++. ..++++.+|||||||||+
T Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~v~~~l~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGe~Qrv~ 231 (608)
T 3j16_B 155 YFTKMLEDDIKAIIKPQYVDNIP---RAIKGPVQKVGELLKLRMEKSPEDVKRYIKILQLENVLKRDIEKLSGGELQRFA 231 (608)
T ss_dssp HHHHHHHTSCCCEEECCCTTTHH---HHCSSSSSHHHHHHHHHCCSCHHHHHHHHHHHTCTGGGGSCTTTCCHHHHHHHH
T ss_pred hhhHHHHHhhhhhhchhhhhhhh---hhhcchhhHHHHHHhhhhhhHHHHHHHHHHHcCCcchhCCChHHCCHHHHHHHH
Confidence 01 112222211110 0111111111111111122345778899999984 456778899999999999
Q ss_pred hhhhhccCceEEEEcCCccccCh----hhHHHHHhhccc---eEEEEcChHHHHH
Q 021362 219 DDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFDE---KWFIEVDLDTAMQ 266 (313)
Q Consensus 219 ia~al~~~ar~Li~d~~~lllDE----~~~~~l~~l~~~---~i~vtHd~~~~~~ 266 (313)
||+|++.++++|++|+|+..||. .+++.|+++.++ .|+||||++++..
T Consensus 232 iAraL~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHdl~~~~~ 286 (608)
T 3j16_B 232 IGMSCVQEADVYMFDEPSSYLDVKQRLNAAQIIRSLLAPTKYVICVEHDLSVLDY 286 (608)
T ss_dssp HHHHHHSCCSEEEEECTTTTCCHHHHHHHHHHHHGGGTTTCEEEEECSCHHHHHH
T ss_pred HHHHHHhCCCEEEEECcccCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHH
Confidence 99999999999999999999999 466777777654 4799999999986
|
| >2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.92 E-value=1.3e-28 Score=239.33 Aligned_cols=187 Identities=12% Similarity=-0.018 Sum_probs=140.0
Q ss_pred cEEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCc-e-eecCCCCCCCeEE
Q 021362 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-S-SFDSQVKPPDVAT 153 (313)
Q Consensus 76 ~~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G-~-i~~~g~~~~~~i~ 153 (313)
+|++++||++.|+ ++||++++|++++|+||||||||||+|+|+|++. |++| + |+++|. ..+.++
T Consensus 117 ~mi~~~nl~~~y~----------~vsl~i~~Ge~v~IvGpnGsGKSTLlr~L~Gl~~---p~~G~~pI~vdg~-~~~~i~ 182 (460)
T 2npi_A 117 TMKYIYNLHFMLE----------KIRMSNFEGPRVVIVGGSQTGKTSLSRTLCSYAL---KFNAYQPLYINLD-PQQPIF 182 (460)
T ss_dssp THHHHHHHHHHHH----------HHHHHSSSCCCEEEEESTTSSHHHHHHHHHHTTH---HHHCCCCEEEECC-TTSCSS
T ss_pred chhhhhhhhehhh----------cCceEeCCCCEEEEECCCCCCHHHHHHHHhCccc---ccCCceeEEEcCC-ccCCee
Confidence 4688889988885 5899999999999999999999999999999999 9999 9 999883 456688
Q ss_pred EEecCCCCCC-cccCCcccChHHHHHh-cCCCCCccHHHHHHHHHHhhcCCCccCCCCCCcCCCcchhhhh--hccCceE
Q 021362 154 VLPMDGFHLY-LSQLDAMEDPKEAHAR-RGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDIL--VGLQHKV 229 (313)
Q Consensus 154 ~v~qd~~~~~-~~~ltv~e~~~~~~~~-~~~~~~~~~~~~~~~l~~l~~~~~~~~~~LSgG~kqRv~ia~a--l~~~ar~ 229 (313)
+++|+...+. ...+++.+|+ ++... .+. ...+++.++++.++........+|||||+||+++|++ ++.++++
T Consensus 183 ~vpq~~~l~~~~~~~tv~eni-~~~~~~~~~---~~~~~~~~ll~~~gl~~~~~~~~LSgGq~qrlalAra~rL~~~p~i 258 (460)
T 2npi_A 183 TVPGCISATPISDILDAQLPT-WGQSLTSGA---TLLHNKQPMVKNFGLERINENKDLYLECISQLGQVVGQRLHLDPQV 258 (460)
T ss_dssp SCSSCCEEEECCSCCCTTCTT-CSCBCBSSC---CSSCCBCCEECCCCSSSGGGCHHHHHHHHHHHHHHHHHHHHHCHHH
T ss_pred eeccchhhcccccccchhhhh-cccccccCc---chHHHHHHHHHHhCCCcccchhhhhHHHHHHHHHHHHHHhccCccc
Confidence 9999853211 2246889888 54321 121 1122334455666643333366999999999999999 9999999
Q ss_pred ----EEEcC-CccccChhhHHHHHhh----ccceEEEEcChH------HHHH---H-----Hh-----hcccccCCchHH
Q 021362 230 ----VIVDG-NYLFLDGGVWKDVSSM----FDEKWFIEVDLD------TAMQ---R-----VL-----KRHISTGKPPDV 281 (313)
Q Consensus 230 ----Li~d~-~~lllDE~~~~~l~~l----~~~~i~vtHd~~------~~~~---r-----v~-----griv~~G~~~ev 281 (313)
|++|+ ++..||.. .+.|.++ ....++|+||.+ ++.. | ++ |+++ .|+++++
T Consensus 259 ~~sGLlLDEpPts~LD~~-~~~l~~l~~~~~~tviiVth~~~~~l~~~~~~~~~dr~~~~~vi~l~k~G~iv-~g~~~~~ 336 (460)
T 2npi_A 259 RRSGCIVDTPSISQLDEN-LAELHHIIEKLNVNIMLVLCSETDPLWEKVKKTFGPELGNNNIFFIPKLDGVS-AVDDVYK 336 (460)
T ss_dssp HHSCEEEECCCGGGSCSS-CHHHHHHHHHTTCCEEEEECCSSCTHHHHHHHHHHHHHCGGGEEEECCCTTCC-CCCHHHH
T ss_pred CcceEEEeCCcccccChh-HHHHHHHHHHhCCCEEEEEccCchhhhHHHHHHhcccccCCEEEEEeCCCcEE-ECCHHHH
Confidence 99999 99999985 3444433 334689999987 4444 6 54 7788 8888776
Q ss_pred H
Q 021362 282 A 282 (313)
Q Consensus 282 ~ 282 (313)
.
T Consensus 337 ~ 337 (460)
T 2npi_A 337 R 337 (460)
T ss_dssp H
T ss_pred h
Confidence 3
|
| >3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus} | Back alignment and structure |
|---|
Probab=99.90 E-value=2.1e-25 Score=226.49 Aligned_cols=94 Identities=18% Similarity=0.170 Sum_probs=74.6
Q ss_pred HHHHHHHHHhhcC---CCccCCCCCCcCCCcchhhhhhccCc---eEEEEcCCccccCh----hhHHHHHhhccc---eE
Q 021362 189 LLLLNCLKNLRNQ---GSVYAPSFDHGVGDPVEDDILVGLQH---KVVIVDGNYLFLDG----GVWKDVSSMFDE---KW 255 (313)
Q Consensus 189 ~~~~~~l~~l~~~---~~~~~~~LSgG~kqRv~ia~al~~~a---r~Li~d~~~lllDE----~~~~~l~~l~~~---~i 255 (313)
.+..+.++.++.. .++++.+|||||||||+||+|++.++ ++|++|+|+..||. .+++.|+++.++ +|
T Consensus 521 ~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~iAraL~~~p~~p~llllDEPt~~LD~~~~~~i~~~l~~l~~~g~tvi 600 (670)
T 3ux8_A 521 KRKLETLYDVGLGYMKLGQPATTLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVL 600 (670)
T ss_dssp HHHHHHHHHTTCTTSBTTCCGGGCCHHHHHHHHHHHHHHSCCCSCEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEE
T ss_pred HHHHHHHHHcCCchhhccCCchhCCHHHHHHHHHHHHHhhCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEE
Confidence 4556777777743 35677799999999999999998876 69999999999998 556666666543 47
Q ss_pred EEEcChHHHHH--HHh----------hcccccCCchHHH
Q 021362 256 FIEVDLDTAMQ--RVL----------KRHISTGKPPDVA 282 (313)
Q Consensus 256 ~vtHd~~~~~~--rv~----------griv~~G~~~ev~ 282 (313)
+||||++++.. |++ |++++.|+++++.
T Consensus 601 ~vtHd~~~~~~~d~i~~l~~~~g~~~G~i~~~g~~~~~~ 639 (670)
T 3ux8_A 601 VIEHNLDVIKTADYIIDLGPEGGDRGGQIVAVGTPEEVA 639 (670)
T ss_dssp EECCCHHHHTTCSEEEEEESSSGGGCCEEEEEECHHHHH
T ss_pred EEeCCHHHHHhCCEEEEecCCcCCCCCEEEEecCHHHHH
Confidence 99999998755 443 7999999999884
|
| >3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP} | Back alignment and structure |
|---|
Probab=99.90 E-value=1.1e-24 Score=189.95 Aligned_cols=182 Identities=32% Similarity=0.458 Sum_probs=142.2
Q ss_pred cCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCCCCeEEEEecCCCCCCcccCCcccChHHHHHhcCCC
Q 021362 104 VNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAP 183 (313)
Q Consensus 104 i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~~~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~ 183 (313)
.++|++++|+||||||||||+++|+|+++ |+ | ..++++++|++++.. +..+++... ...+.+
T Consensus 19 ~~~g~~v~I~G~sGsGKSTl~~~l~~~~~---~~-g----------~~~g~v~~d~~~~~~---~~~~~~~~~-~~~~~~ 80 (208)
T 3c8u_A 19 QPGRQLVALSGAPGSGKSTLSNPLAAALS---AQ-G----------LPAEVVPMDGFHLDN---RLLEPRGLL-PRKGAP 80 (208)
T ss_dssp CCSCEEEEEECCTTSCTHHHHHHHHHHHH---HT-T----------CCEEEEESGGGBCCH---HHHGGGTCG-GGTTSG
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHh---hc-C----------CceEEEecCCCcCCH---HHHHHhccc-ccCCCC
Confidence 57899999999999999999999999997 54 3 236789998775532 222222110 123455
Q ss_pred CCccHHHHHHHHHHhhcCCCc------cCCCCCCcCCCcchhhhhhccCc-eEEEEcCCccccChhhHHHHHhhccceEE
Q 021362 184 WTFNPLLLLNCLKNLRNQGSV------YAPSFDHGVGDPVEDDILVGLQH-KVVIVDGNYLFLDGGVWKDVSSMFDEKWF 256 (313)
Q Consensus 184 ~~~~~~~~~~~l~~l~~~~~~------~~~~LSgG~kqRv~ia~al~~~a-r~Li~d~~~lllDE~~~~~l~~l~~~~i~ 256 (313)
..++...+.+.+..+....+. ....+|+|++|++++ + ++++.|++++++||..|..+.+.++..++
T Consensus 81 ~~~~~~~~~~~l~~l~~~~~i~~p~~d~~~~~~~g~~~~v~~-------~~~~~i~eg~~~l~de~~~~~l~~~~d~~i~ 153 (208)
T 3c8u_A 81 ETFDFEGFQRLCHALKHQERVIYPLFDRARDIAIAGAAEVGP-------ECRVAIIEGNYLLFDAPGWRDLTAIWDVSIR 153 (208)
T ss_dssp GGBCHHHHHHHHHHHHHCSCEEEEEEETTTTEEEEEEEEECT-------TCCEEEEEESSTTBCSTTGGGGGGTCSEEEE
T ss_pred chhhHHHHHHHHHHHhcCCceecccCCccccCCCCCceEEcC-------CCcEEEECCceeccCCchhHHHHHhcCEEEE
Confidence 556666677777776543222 233678999999998 7 99999999999999888888888999999
Q ss_pred EEcChHHHHHHHhhcccccCCchHHHHHHHHhcCCchhHHhhhcccCccEEeec
Q 021362 257 IEVDLDTAMQRVLKRHISTGKPPDVAKWRIEYNDRPNAELIMKSKKNADLVIKS 310 (313)
Q Consensus 257 vtHd~~~~~~rv~griv~~G~~~ev~~~~~~~~~~~~~~~i~~~~~~ad~ii~~ 310 (313)
++++.+....|++.|.+..|.+.+.+..++..++.|+.+++.+.+..||+||++
T Consensus 154 vd~~~~~~~~R~~~R~~~~g~t~~~~~~~~~~~~~~~~~~i~~~~~~aD~vi~~ 207 (208)
T 3c8u_A 154 LEVPMADLEARLVQRWLDHGLNHDAAVARAQGNDLANARAIEAARLPADLTWPQ 207 (208)
T ss_dssp ECCCHHHHHHHHHHHHHHTTCCHHHHHHHHHTHHHHHHHHHHTTBCCCSEEEC-
T ss_pred EeCCHHHHHHHHHHHHHhcCCCHHHHHHHHHhccHHHHHHHHhCCCCCCEEeeC
Confidence 999999988888888777788888888888888999999999999999999975
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=99.90 E-value=2.6e-24 Score=212.89 Aligned_cols=169 Identities=14% Similarity=-0.048 Sum_probs=119.2
Q ss_pred ccceEEccccccccccccccccc-cCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCcee-----------ecCCCCC
Q 021362 81 RCMDEVYDALAQRLLPTSALASN-VNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-----------FDSQVKP 148 (313)
Q Consensus 81 ~~l~~~y~~~~~~~~~L~~vsl~-i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i-----------~~~g~~~ 148 (313)
++.+.+||.+. ++-..|. +++||++||+||||||||||+|+|+|+++ |++|+| .+.|.+.
T Consensus 3 ~~~~~~~~~~~-----f~l~~l~~~~~Gei~gLiGpNGaGKSTLlkiL~Gl~~---p~~G~i~~~~~~~~~~~~~~g~~i 74 (538)
T 3ozx_A 3 GEVIHRYKVNG-----FKLFGLPTPKNNTILGVLGKNGVGKTTVLKILAGEII---PNFGDPNSKVGKDEVLKRFRGKEI 74 (538)
T ss_dssp CCEEEESSTTS-----CEEECCCCCCTTEEEEEECCTTSSHHHHHHHHTTSSC---CCTTCTTSCCCHHHHHHHHTTSTT
T ss_pred CCCceecCCCc-----eeecCCCCCCCCCEEEEECCCCCcHHHHHHHHhcCCC---CCCCccccccchhhHHhhcCCeeH
Confidence 45678898642 3444444 45999999999999999999999999999 999998 5666543
Q ss_pred C----------CeEEEEecCCCCCCc-ccCCcccChHHHHHhcCCCCCccHHHHHHHHHHhh--cCCCccCCCCCCcCCC
Q 021362 149 P----------DVATVLPMDGFHLYL-SQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLR--NQGSVYAPSFDHGVGD 215 (313)
Q Consensus 149 ~----------~~i~~v~qd~~~~~~-~~ltv~e~~~~~~~~~~~~~~~~~~~~~~~l~~l~--~~~~~~~~~LSgG~kq 215 (313)
. ..+....|....... ...++.+++. .. ...+++.++++.++ ...++++.+|||||||
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~----~~-----~~~~~~~~~l~~l~l~~~~~~~~~~LSgGe~Q 145 (538)
T 3ozx_A 75 YNYFKELYSNELKIVHKIQYVEYASKFLKGTVNEILT----KI-----DERGKKDEVKELLNMTNLWNKDANILSGGGLQ 145 (538)
T ss_dssp HHHHHHHHTTCCCEEEECSCTTGGGTTCCSBHHHHHH----HH-----CCSSCHHHHHHHTTCGGGTTSBGGGCCHHHHH
T ss_pred HHHHHHHhhcccchhhccchhhhhhhhccCcHHHHhh----cc-----hhHHHHHHHHHHcCCchhhcCChhhCCHHHHH
Confidence 1 113333333211110 0012332221 11 11234567778877 3457788899999999
Q ss_pred cchhhhhhccCceEEEEcCCccccCh----hhHHHHHhhccc--eEEEEcChHHHHH
Q 021362 216 PVEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFDE--KWFIEVDLDTAMQ 266 (313)
Q Consensus 216 Rv~ia~al~~~ar~Li~d~~~lllDE----~~~~~l~~l~~~--~i~vtHd~~~~~~ 266 (313)
||+||+|++.++++|++|+|+..||. .+++.|+++.+. .|+||||++++..
T Consensus 146 rv~iA~aL~~~p~illlDEPts~LD~~~~~~l~~~l~~l~~g~tii~vsHdl~~~~~ 202 (538)
T 3ozx_A 146 RLLVAASLLREADVYIFDQPSSYLDVRERMNMAKAIRELLKNKYVIVVDHDLIVLDY 202 (538)
T ss_dssp HHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHCTTSEEEEECSCHHHHHH
T ss_pred HHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHhCCCEEEEEEeChHHHHh
Confidence 99999999999999999999999999 466666666432 4799999999876
|
| >3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.89 E-value=9.2e-25 Score=191.22 Aligned_cols=144 Identities=17% Similarity=0.078 Sum_probs=95.1
Q ss_pred EEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCC-----CCCCCeEEEEecCC
Q 021362 85 EVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQ-----VKPPDVATVLPMDG 159 (313)
Q Consensus 85 ~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g-----~~~~~~i~~v~qd~ 159 (313)
|+|++.. +|+++ ++|++++|+||||||||||+++|+|+ + |++|+|.... ....+.++|++|++
T Consensus 8 k~~g~~~----~l~~i----~~Ge~~~liG~nGsGKSTLl~~l~Gl-~---p~~G~I~~~~~~~~~~~~~~~ig~v~q~~ 75 (208)
T 3b85_A 8 KTLGQKH----YVDAI----DTNTIVFGLGPAGSGKTYLAMAKAVQ-A---LQSKQVSRIILTRPAVEAGEKLGFLPGTL 75 (208)
T ss_dssp CSHHHHH----HHHHH----HHCSEEEEECCTTSSTTHHHHHHHHH-H---HHTTSCSEEEEEECSCCTTCCCCSSCC--
T ss_pred CCHhHHH----HHHhc----cCCCEEEEECCCCCCHHHHHHHHhcC-C---CcCCeeeeEEecCCchhhhcceEEecCCH
Confidence 4677666 89984 89999999999999999999999999 8 9999985311 12334588888874
Q ss_pred CCCCcccCCcccCh-HHH----HHhcCCCCCccHHHHHHHHHHhhcCCCccCCCCCCcCCCcchhhhhhccCceEEEEcC
Q 021362 160 FHLYLSQLDAMEDP-KEA----HARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDG 234 (313)
Q Consensus 160 ~~~~~~~ltv~e~~-~~~----~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~LSgG~kqRv~ia~al~~~ar~Li~d~ 234 (313)
.+|+ .+. ..... ....+++.++++. +. |||||++||++++.++++|++|+
T Consensus 76 ----------~enl~~~~~~~~~~~~~---~~~~~~~~~~l~~-gl-----------Gq~qrv~lAraL~~~p~lllLDE 130 (208)
T 3b85_A 76 ----------NEKIDPYLRPLHDALRD---MVEPEVIPKLMEA-GI-----------VEVAPLAYMRGRTLNDAFVILDE 130 (208)
T ss_dssp --------------CTTTHHHHHHHTT---TSCTTHHHHHHHT-TS-----------EEEEEGGGGTTCCBCSEEEEECS
T ss_pred ----------HHHHHHHHHHHHHHHHH---hccHHHHHHHHHh-CC-----------chHHHHHHHHHHhcCCCEEEEeC
Confidence 2222 111 11111 1123445566654 21 99999999999999999999888
Q ss_pred CccccChhhHHHHHhhccc--eEEEEcChHHHHH
Q 021362 235 NYLFLDGGVWKDVSSMFDE--KWFIEVDLDTAMQ 266 (313)
Q Consensus 235 ~~lllDE~~~~~l~~l~~~--~i~vtHd~~~~~~ 266 (313)
|+...-+.+++.|+++ .+ .+++|||++++..
T Consensus 131 Pts~~~~~l~~~l~~l-~~g~tiivtHd~~~~~~ 163 (208)
T 3b85_A 131 AQNTTPAQMKMFLTRL-GFGSKMVVTGDITQVDL 163 (208)
T ss_dssp GGGCCHHHHHHHHTTB-CTTCEEEEEEC------
T ss_pred CccccHHHHHHHHHHh-cCCCEEEEECCHHHHhC
Confidence 8888333677777776 32 3449999998765
|
| >2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=3.1e-23 Score=213.46 Aligned_cols=95 Identities=17% Similarity=0.200 Sum_probs=75.8
Q ss_pred HHHHHHHHHhhcC---CCccCCCCCCcCCCcchhhhhhccC---ceEEEEcCCccccCh----hhHHHHHhhccc---eE
Q 021362 189 LLLLNCLKNLRNQ---GSVYAPSFDHGVGDPVEDDILVGLQ---HKVVIVDGNYLFLDG----GVWKDVSSMFDE---KW 255 (313)
Q Consensus 189 ~~~~~~l~~l~~~---~~~~~~~LSgG~kqRv~ia~al~~~---ar~Li~d~~~lllDE----~~~~~l~~l~~~---~i 255 (313)
.++.++|+.++.. .++++.+|||||||||+||++++.+ +++|++|+|+..||. .+++.|.++.+. +|
T Consensus 708 ~~~~~~L~~~gL~~~~l~~~~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~tVI 787 (842)
T 2vf7_A 708 FRALDTLREVGLGYLRLGQPATELSGGEAQRIKLATELRRSGRGGTVYVLDEPTTGLHPADVERLQRQLVKLVDAGNTVI 787 (842)
T ss_dssp HHHHHHHHHTTCTTSBTTCCGGGCCHHHHHHHHHHHTTSSCCSSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEE
T ss_pred HHHHHHHHHcCCCcccccCCcccCCHHHHHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEE
Confidence 4567888888853 3567789999999999999999996 699999999999999 555556655443 47
Q ss_pred EEEcChHHHHH--HHh----------hcccccCCchHHHH
Q 021362 256 FIEVDLDTAMQ--RVL----------KRHISTGKPPDVAK 283 (313)
Q Consensus 256 ~vtHd~~~~~~--rv~----------griv~~G~~~ev~~ 283 (313)
+||||++++.. |++ |++++.|+++++..
T Consensus 788 visHdl~~i~~aDrii~L~p~~g~~~G~Iv~~g~~~el~~ 827 (842)
T 2vf7_A 788 AVEHKMQVVAASDWVLDIGPGAGEDGGRLVAQGTPAEVAQ 827 (842)
T ss_dssp EECCCHHHHTTCSEEEEECSSSGGGCCSEEEEECHHHHTT
T ss_pred EEcCCHHHHHhCCEEEEECCCCCCCCCEEEEEcCHHHHHh
Confidence 99999999843 543 58888999888754
|
| >2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A | Back alignment and structure |
|---|
Probab=99.87 E-value=2.7e-23 Score=214.67 Aligned_cols=94 Identities=18% Similarity=0.182 Sum_probs=74.8
Q ss_pred HHHHHHHHhhcC---CCccCCCCCCcCCCcchhhhhhccCc---eEEEEcCCccccCh----hhHHHHHhhccc---eEE
Q 021362 190 LLLNCLKNLRNQ---GSVYAPSFDHGVGDPVEDDILVGLQH---KVVIVDGNYLFLDG----GVWKDVSSMFDE---KWF 256 (313)
Q Consensus 190 ~~~~~l~~l~~~---~~~~~~~LSgG~kqRv~ia~al~~~a---r~Li~d~~~lllDE----~~~~~l~~l~~~---~i~ 256 (313)
+..++|+.++.. .++++.+|||||||||+||++++.++ ++|++|+|+..||. .+++.|.++.+. +|+
T Consensus 824 ~~~~~L~~~gL~~~~l~~~~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~TVIv 903 (972)
T 2r6f_A 824 RKLETLYDVGLGYMKLGQPATTLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLV 903 (972)
T ss_dssp HHHHHHHHTTCSSSBTTCCGGGCCHHHHHHHHHHHHHSSCCCSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEE
T ss_pred HHHHHHHHcCCCcccccCchhhCCHHHHHHHHHHHHHhcCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEE
Confidence 456788888853 45677899999999999999999764 99999999999999 566666666443 479
Q ss_pred EEcChHHHHH--HHh----------hcccccCCchHHHH
Q 021362 257 IEVDLDTAMQ--RVL----------KRHISTGKPPDVAK 283 (313)
Q Consensus 257 vtHd~~~~~~--rv~----------griv~~G~~~ev~~ 283 (313)
||||++++.. |++ |++++.|+++++..
T Consensus 904 isHdl~~i~~aDrIivL~p~gG~~~G~Iv~~g~~~el~~ 942 (972)
T 2r6f_A 904 IEHNLDVIKTADYIIDLGPEGGDRGGQIVAVGTPEEVAE 942 (972)
T ss_dssp ECCCHHHHTTCSEEEEECSSSTTSCCSEEEEESHHHHHT
T ss_pred EcCCHHHHHhCCEEEEEcCCCCCCCCEEEEecCHHHHHh
Confidence 9999998754 443 68888999988854
|
| >3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=1.2e-21 Score=170.51 Aligned_cols=178 Identities=24% Similarity=0.340 Sum_probs=134.4
Q ss_pred cCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCCCCeEEEEecCCCCCCcccCCcccChHHHHHhcCCC
Q 021362 104 VNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAP 183 (313)
Q Consensus 104 i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~~~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~ 183 (313)
.++|+++||+||||||||||+++|+|++. | .++|++||+++.....+++.++..+. ++.+
T Consensus 3 ~~~~~~i~i~G~~GsGKSTl~~~l~~~~~---~--------------~i~~v~~d~~~~~~~~~~~~~~~~~~---~~~~ 62 (211)
T 3asz_A 3 APKPFVIGIAGGTASGKTTLAQALARTLG---E--------------RVALLPMDHYYKDLGHLPLEERLRVN---YDHP 62 (211)
T ss_dssp --CCEEEEEEESTTSSHHHHHHHHHHHHG---G--------------GEEEEEGGGCBCCCTTSCHHHHHHSC---TTSG
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHHHHhC---C--------------CeEEEecCccccCcccccHHHhcCCC---CCCh
Confidence 47899999999999999999999999986 4 47899999876543346666654332 2334
Q ss_pred CCccHHHHHHHHHHhhcCC--CccCCCCCCcCC----CcchhhhhhccCceEEEEcCCccccChhhHHHHHhhccceEEE
Q 021362 184 WTFNPLLLLNCLKNLRNQG--SVYAPSFDHGVG----DPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEKWFI 257 (313)
Q Consensus 184 ~~~~~~~~~~~l~~l~~~~--~~~~~~LSgG~k----qRv~ia~al~~~ar~Li~d~~~lllDE~~~~~l~~l~~~~i~v 257 (313)
...+.+++.+.++.++... ..+...+|+|++ ||+++ +++++.||+++++|| .+..+++..+++
T Consensus 63 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~s~g~~~~~~~~~~~-------~~~li~~~~ll~~de----~~~~~~d~~i~l 131 (211)
T 3asz_A 63 DAFDLALYLEHAQALLRGLPVEMPVYDFRAYTRSPRRTPVRP-------APVVILEGILVLYPK----ELRDLMDLKVFV 131 (211)
T ss_dssp GGBCHHHHHHHHHHHHTTCCEEECCEETTTTEECSSCEEECC-------CSEEEEESTTTTSSH----HHHTTCSEEEEE
T ss_pred hhhhHHHHHHHHHHHHcCCCcCCCcccCcccCCCCCeEEeCC-------CcEEEEeehhhccCH----HHHHhcCEEEEE
Confidence 4556677888888887443 334448999964 67777 999999999999996 345667888999
Q ss_pred EcChHHHHHHHhhccc-ccCCchHHHHHHHHhcCCchhH-HhhhcccCccEEeecCC
Q 021362 258 EVDLDTAMQRVLKRHI-STGKPPDVAKWRIEYNDRPNAE-LIMKSKKNADLVIKSID 312 (313)
Q Consensus 258 tHd~~~~~~rv~griv-~~G~~~ev~~~~~~~~~~~~~~-~i~~~~~~ad~ii~~~~ 312 (313)
+.+.+....|.+.|.. ..|.....+..++...+.++.+ ++.+.+..||+||.+..
T Consensus 132 d~~~~~~~~r~l~r~~~~~g~t~~~~~~~~~~~~~~~~~~~~~~~~~~aD~ii~~~~ 188 (211)
T 3asz_A 132 DADADERFIRRLKRDVLERGRSLEGVVAQYLEQVKPMHLHFVEPTKRYADVIVPRGG 188 (211)
T ss_dssp ECCHHHHHHHHHHHHHHHSCCCHHHHHHHHHHTHHHHHHHTTGGGGGGCSEEEESTT
T ss_pred eCCHHHHHHHHHHHHHHHhCCCHHHHHHHHHHhhhhhHHHhcccchhcCeEEEeCCC
Confidence 9999887776665543 4577766667777777777776 88999999999998753
|
| >3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=99.85 E-value=3.3e-22 Score=207.35 Aligned_cols=95 Identities=18% Similarity=0.193 Sum_probs=76.9
Q ss_pred HHHHHHHHHhhcC---CCccCCCCCCcCCCcchhhhhhccCc---eEEEEcCCccccCh----hhHHHHHhhccc---eE
Q 021362 189 LLLLNCLKNLRNQ---GSVYAPSFDHGVGDPVEDDILVGLQH---KVVIVDGNYLFLDG----GVWKDVSSMFDE---KW 255 (313)
Q Consensus 189 ~~~~~~l~~l~~~---~~~~~~~LSgG~kqRv~ia~al~~~a---r~Li~d~~~lllDE----~~~~~l~~l~~~---~i 255 (313)
.+..++|+.++.. ..+++.+|||||+|||+||++|+.++ ++|++|+|+..||. .+++.|.++.+. +|
T Consensus 783 ~~~~~~L~~vGL~~~~lgq~~~~LSGGErQRV~LAraL~~~p~~p~LLILDEPTsGLD~~~~~~L~~lL~~L~~~G~TVI 862 (916)
T 3pih_A 783 KRTLQVLHDVGLGYVKLGQPATTLSGGEAQRIKLASELRKRDTGRTLYILDEPTVGLHFEDVRKLVEVLHRLVDRGNTVI 862 (916)
T ss_dssp HHHHHHHHHTTGGGSBTTCCSTTCCHHHHHHHHHHHHHTSCCCSSEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEE
T ss_pred HHHHHHHHHcCCchhhccCCccCCCHHHHHHHHHHHHHhhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEE
Confidence 4566788888853 45678899999999999999998765 79999999999999 556666665443 47
Q ss_pred EEEcChHHHHH--HHh----------hcccccCCchHHHH
Q 021362 256 FIEVDLDTAMQ--RVL----------KRHISTGKPPDVAK 283 (313)
Q Consensus 256 ~vtHd~~~~~~--rv~----------griv~~G~~~ev~~ 283 (313)
+|+||++++.. |++ |++++.|+++++..
T Consensus 863 vI~HdL~~i~~ADrIivLgp~gg~~~G~Iv~~Gtpeel~~ 902 (916)
T 3pih_A 863 VIEHNLDVIKNADHIIDLGPEGGKEGGYIVATGTPEEIAK 902 (916)
T ss_dssp EECCCHHHHTTCSEEEEEESSSGGGCCEEEEEESHHHHHS
T ss_pred EEeCCHHHHHhCCEEEEecCCCCCCCCEEEEEcCHHHHHh
Confidence 99999998866 554 78999999999865
|
| >2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A* | Back alignment and structure |
|---|
Probab=99.85 E-value=5.8e-24 Score=196.00 Aligned_cols=162 Identities=10% Similarity=0.025 Sum_probs=115.1
Q ss_pred EEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCCCCeEEEEe
Q 021362 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLP 156 (313)
Q Consensus 77 ~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~~~~i~~v~ 156 (313)
+|+++||++.|+ .. +|+++||+|++|++++|+||||||||||+++|+|++ +|+|. ++++
T Consensus 101 ~i~~~~vs~~y~-~~----vL~~vsl~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~------~G~I~----------~~v~ 159 (305)
T 2v9p_A 101 FFNYQNIELITF-IN----ALKLWLKGIPKKNCLAFIGPPNTGKSMLCNSLIHFL------GGSVL----------SFAN 159 (305)
T ss_dssp HHHHTTCCHHHH-HH----HHHHHHHTCTTCSEEEEECSSSSSHHHHHHHHHHHH------TCEEE----------CGGG
T ss_pred eEEEEEEEEEcC-hh----hhccceEEecCCCEEEEECCCCCcHHHHHHHHhhhc------CceEE----------EEec
Confidence 488999999997 44 999999999999999999999999999999999998 47774 3567
Q ss_pred cCCCCCCcccCCccc-ChHHHHHhcCCCCCccHHHHHHHHHH-hhcCCCccCCCCCCcCCCcchhhhhhccCceEEEEcC
Q 021362 157 MDGFHLYLSQLDAME-DPKEAHARRGAPWTFNPLLLLNCLKN-LRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDG 234 (313)
Q Consensus 157 qd~~~~~~~~ltv~e-~~~~~~~~~~~~~~~~~~~~~~~l~~-l~~~~~~~~~~LSgG~kqRv~ia~al~~~ar~Li~d~ 234 (313)
|++..+. .|+.+ |+.+.. . ..+.+.+.++. +....+ ...|||||||| |++++.++++|+
T Consensus 160 q~~~lf~---~ti~~~ni~~~~------~--~~~~~~~~i~~~L~~gld--g~~LSgGqkQR---ARAll~~p~iLl--- 220 (305)
T 2v9p_A 160 HKSHFWL---ASLADTRAALVD------D--ATHACWRYFDTYLRNALD--GYPVSIDRKHK---AAVQIKAPPLLV--- 220 (305)
T ss_dssp TTSGGGG---GGGTTCSCEEEE------E--ECHHHHHHHHHTTTGGGG--TCCEECCCSSC---CCCEECCCCEEE---
T ss_pred Ccccccc---ccHHHHhhccCc------c--ccHHHHHHHHHHhHccCC--ccCcCHHHHHH---HHHHhCCCCEEE---
Confidence 7754333 36776 776531 0 11244555555 433222 56999999999 899999999998
Q ss_pred CccccChhhHHHHHhhccceEEEEcChHHHHH--HHh---hcccccCCchHHHHHHHH
Q 021362 235 NYLFLDGGVWKDVSSMFDEKWFIEVDLDTAMQ--RVL---KRHISTGKPPDVAKWRIE 287 (313)
Q Consensus 235 ~~lllDE~~~~~l~~l~~~~i~vtHd~~~~~~--rv~---griv~~G~~~ev~~~~~~ 287 (313)
+.-||....+.+..+ +|++..+.. |++ |++++.|+++++ ...|.
T Consensus 221 -Ts~LD~~~~~~i~~l-------tH~~~~~~~aD~ivl~~G~iv~~g~~~el-~~~y~ 269 (305)
T 2v9p_A 221 -TSNIDVQAEDRYLYL-------HSRVQTFRFEQPCTDESGEQPFNITDADW-KSFFV 269 (305)
T ss_dssp -EESSCSTTCGGGGGG-------TTTEEEEECCCCCCCC---CCCCCCHHHH-HHHHH
T ss_pred -ECCCCHHHHHHHHHH-------hCCHHHHHhCCEEEEeCCEEEEeCCHHHH-HHHHH
Confidence 888998444444333 555543322 223 899999999988 44343
|
| >1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A* | Back alignment and structure |
|---|
Probab=99.82 E-value=1.4e-21 Score=180.78 Aligned_cols=206 Identities=18% Similarity=0.258 Sum_probs=141.2
Q ss_pred EEEEccceEEcccccccccccccccccc-------------------CCCcEEEEECCCCCcHHHHHHHHHHHhcccCCC
Q 021362 77 VVEARCMDEVYDALAQRLLPTSALASNV-------------------NVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQ 137 (313)
Q Consensus 77 ~l~~~~l~~~y~~~~~~~~~L~~vsl~i-------------------~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~ 137 (313)
+|++++|++.|+ . ++++++|.+ .+|+++||+||||||||||+++|+|++.. +|+
T Consensus 37 ~i~~~~v~~~y~--~----~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~g~iigI~G~~GsGKSTl~~~L~~~l~~-~~~ 109 (308)
T 1sq5_A 37 DLSLEEVAEIYL--P----LSRLLNFYISSNLRRQAVLEQFLGTNGQRIPYIISIAGSVAVGKSTTARVLQALLSR-WPE 109 (308)
T ss_dssp TCCHHHHHHTHH--H----HHHHHHHHHHHHHHHHHHHHHHHTCC-CCCCEEEEEEECTTSSHHHHHHHHHHHHTT-STT
T ss_pred ccchHhHHHHHH--H----HHHHHHHHHhhhhhHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHHhh-CCC
Confidence 589999999995 3 889999998 99999999999999999999999999841 267
Q ss_pred Cceeec---CCCCCCC----eEEEEecCCCCCCcccCCcccChHHHHHhcCCCCCccHHHHHHHHHHhhcCCC-ccCCCC
Q 021362 138 KASSFD---SQVKPPD----VATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQGS-VYAPSF 209 (313)
Q Consensus 138 ~G~i~~---~g~~~~~----~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~-~~~~~L 209 (313)
+|+|.+ +|..... .++++ |. .+.+...+.......+..+..... ...|.+
T Consensus 110 ~G~i~vi~~d~~~~~~~~~~~~~~v-q~---------------------~~~~~~~~~~~~~~~~~~l~~~~~~i~~P~~ 167 (308)
T 1sq5_A 110 HRRVELITTDGFLHPNQVLKERGLM-KK---------------------KGFPESYDMHRLVKFVSDLKSGVPNVTAPVY 167 (308)
T ss_dssp CCCEEEEEGGGGBCCHHHHHHHTCT-TC---------------------TTSGGGBCHHHHHHHHHHHTTTCSCEEECCE
T ss_pred CCeEEEEecCCccCcHHHHHhCCEe-ec---------------------CCCCCCccHHHHHHHHHHHhCCCCceecccc
Confidence 888766 4432110 11222 21 111222233333333333333333 456677
Q ss_pred CCcCCCcchhhhhhccCceEEEEcCCccccChh------hHHHHHhhccceEEEEcChHHHHHHHhhcccc---------
Q 021362 210 DHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGG------VWKDVSSMFDEKWFIEVDLDTAMQRVLKRHIS--------- 274 (313)
Q Consensus 210 SgG~kqRv~ia~al~~~ar~Li~d~~~lllDE~------~~~~l~~l~~~~i~vtHd~~~~~~rv~griv~--------- 274 (313)
+....+|+..+......++++++|+++++.++. -...+.++++..|+|+.|.+...+|++.|.+.
T Consensus 168 ~~~~~~~~~~~~~~~~~~~ivIlEG~~l~~~~~~~~~~~~~~~~~~~~D~~i~V~~~~~~~~~R~~~R~~~~r~~~~r~~ 247 (308)
T 1sq5_A 168 SHLIYDVIPDGDKTVVQPDILILEGLNVLQSGMDYPHDPHHVFVSDFVDFSIYVDAPEDLLQTWYINRFLKFREGAFTDP 247 (308)
T ss_dssp ETTTTEECTTCCEEEC-CCEEEEECTTTTCCGGGCTTSCCSSCGGGGCSEEEEEECCHHHHHHHHHHHHHHHHHTTTTCT
T ss_pred cccccCcccccceecCCCCEEEECchhhCCCccccccccchHHHHHhCCEEEEEECCHHHHHHHHHHHHHHHHHhhccCC
Confidence 777778877655555668899999999998720 00235677888999999999888877754321
Q ss_pred -------cCCchHH----HHHHHHhcCCchhH-HhhhcccCccEEeecC
Q 021362 275 -------TGKPPDV----AKWRIEYNDRPNAE-LIMKSKKNADLVIKSI 311 (313)
Q Consensus 275 -------~G~~~ev----~~~~~~~~~~~~~~-~i~~~~~~ad~ii~~~ 311 (313)
.|-+.+- +..+|...++|+.+ |+.|.+..||+||++.
T Consensus 248 ~~~~~~~~g~s~e~a~~~i~~q~~~~~~~~~~~~i~~~~~~AD~vI~n~ 296 (308)
T 1sq5_A 248 DSYFHNYAKLTKEEAIKTAMTLWKEINWLNLKQNILPTRERASLILTKS 296 (308)
T ss_dssp TSTTHHHHTSCHHHHHHHHHHHHHHTHHHHHHHTTGGGGGGCSEEEEEC
T ss_pred chhhhcccCCCHHHHHHHHHHHHHhccHHHHHHHcccccccCcEEEEeC
Confidence 2444443 44556677888886 9999999999999875
|
| >4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A* | Back alignment and structure |
|---|
Probab=99.82 E-value=3.4e-21 Score=163.04 Aligned_cols=140 Identities=11% Similarity=0.012 Sum_probs=85.0
Q ss_pred ccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCCCCeEEEEecCCCCCCcccCCcccChHHHHH
Q 021362 99 ALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHA 178 (313)
Q Consensus 99 ~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~~~~i~~v~qd~~~~~~~~ltv~e~~~~~~~ 178 (313)
|+||++++||+++|+||||||||||++++.+-.. ..++. ...++++|+....... -++++++
T Consensus 1 ~vsl~i~~gei~~l~G~nGsGKSTl~~~~~~~~~---~~~~d---------~~~g~~~~~~~~~~~~-~~~~~~~----- 62 (171)
T 4gp7_A 1 SMKLTIPELSLVVLIGSSGSGKSTFAKKHFKPTE---VISSD---------FCRGLMSDDENDQTVT-GAAFDVL----- 62 (171)
T ss_dssp CEEEEEESSEEEEEECCTTSCHHHHHHHHSCGGG---EEEHH---------HHHHHHCSSTTCGGGH-HHHHHHH-----
T ss_pred CccccCCCCEEEEEECCCCCCHHHHHHHHccCCe---EEccH---------HHHHHhcCcccchhhH-HHHHHHH-----
Confidence 6899999999999999999999999996332111 00000 0012333432211000 0000000
Q ss_pred hcCCCCCccHHHHHHHHHHhhcC-CCccCCCCCCcCCCcchhhhhhccCceEEEEcCCccccChh---------------
Q 021362 179 RRGAPWTFNPLLLLNCLKNLRNQ-GSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGG--------------- 242 (313)
Q Consensus 179 ~~~~~~~~~~~~~~~~l~~l~~~-~~~~~~~LSgG~kqRv~ia~al~~~ar~Li~d~~~lllDE~--------------- 242 (313)
....... ...+.. ........|+|||||++||++++.++++|++|+|+..||+.
T Consensus 63 ---------~~~~~~~-~~~g~~~~~~~~~~~s~g~~qrv~iAral~~~p~~lllDEPt~~Ld~~~~~R~~~~~~~~vi~ 132 (171)
T 4gp7_A 63 ---------HYIVSKR-LQLGKLTVVDATNVQESARKPLIEMAKDYHCFPVAVVFNLPEKVCQERNKNRTDRQVEEYVIR 132 (171)
T ss_dssp ---------HHHHHHH-HHTTCCEEEESCCCSHHHHHHHHHHHHHTTCEEEEEEECCCHHHHHHHHHTCSSCCCCHHHHH
T ss_pred ---------HHHHHHH-HhCCCeEEEECCCCCHHHHHHHHHHHHHcCCcEEEEEEeCCHHHHHHHHhcccCCCCCHHHHH
Confidence 0011111 112211 11133456999999999999999999999999999999975
Q ss_pred -hHHHHHhhcc----c---eEEEEcChHHHHH
Q 021362 243 -VWKDVSSMFD----E---KWFIEVDLDTAMQ 266 (313)
Q Consensus 243 -~~~~l~~l~~----~---~i~vtHd~~~~~~ 266 (313)
..+.+.++.. + .+++|||++++..
T Consensus 133 ~~~~~l~~~l~~l~~~g~tvi~vtH~~~~~~~ 164 (171)
T 4gp7_A 133 KHTQQMKKSIKGLQREGFRYVYILNSPEEVEE 164 (171)
T ss_dssp HHHHHHHHHSTTHHHHTCSEEEEECSHHHHHH
T ss_pred HHHHHhhhhhhhHHhcCCcEEEEeCCHHHhhh
Confidence 4355554432 2 4799999999875
|
| >3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=99.81 E-value=5.8e-21 Score=177.21 Aligned_cols=210 Identities=22% Similarity=0.311 Sum_probs=157.1
Q ss_pred cceEEccccccccccccccccccCCCc------EEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCCCCeEEEE
Q 021362 82 CMDEVYDALAQRLLPTSALASNVNVKH------IVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVL 155 (313)
Q Consensus 82 ~l~~~y~~~~~~~~~L~~vsl~i~~Ge------iv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~~~~i~~v 155 (313)
.+++.|++.. +|.+++..+.++. ++||+||||||||||+++|.+++.. +|+.| .++++
T Consensus 65 ll~~~~~~~~----~l~~~~~~~l~~~~~~~p~iigI~GpsGSGKSTl~~~L~~ll~~-~~~~~-----------~v~~i 128 (321)
T 3tqc_A 65 LLSFYVTARQ----TLQQATYQFLGKPEPKVPYIIGIAGSVAVGKSTTSRVLKALLSR-WPDHP-----------NVEVI 128 (321)
T ss_dssp HHHHHHHHHH----HHHHHHHHHHTCCCCCCCEEEEEECCTTSSHHHHHHHHHHHHTT-STTCC-----------CEEEE
T ss_pred HHHHhhcchH----HHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHhcc-cCCCC-----------eEEEE
Confidence 3455566665 8888998888776 9999999999999999999999961 12333 36779
Q ss_pred ecCCCCCCcccCCcccChHHHHHhcCCCCCccHHHHHHHHHHhhcCC-CccCCCCCCcCCCcchhhhhhccCceEEEEcC
Q 021362 156 PMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQG-SVYAPSFDHGVGDPVEDDILVGLQHKVVIVDG 234 (313)
Q Consensus 156 ~qd~~~~~~~~ltv~e~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~-~~~~~~LSgG~kqRv~ia~al~~~ar~Li~d~ 234 (313)
.+|+++.....+. ++- ....+|.|..++.+.+.+.++.+..+. ....|.||.+..+|+..+......++++|+|+
T Consensus 129 ~~D~f~~~~~~l~--~~~--~~~~~g~P~~~D~~~l~~~L~~L~~g~~~v~~P~yd~~~~~r~~~~~~~v~~~dIVIvEG 204 (321)
T 3tqc_A 129 TTDGFLYSNAKLE--KQG--LMKRKGFPESYDMPSLLRVLNAIKSGQRNVRIPVYSHHYYDIVRGQYEIVDQPDIVILEG 204 (321)
T ss_dssp EGGGGBCCHHHHH--HTT--CGGGTTSGGGBCHHHHHHHHHHHHTTCSSEEEEEEETTTTEEEEEEEEEECSCSEEEEEC
T ss_pred eecccccchhhhh--hHH--HHhhccCcccccHHHHHHHHHhhhccccccccchhhhhccccccCceeeccCCCEEEEEc
Confidence 9998765432111 110 112356777888899999999888766 67889999999999876566677899999999
Q ss_pred CccccChh------hHHHHHhhccceEEEEcChHHHHHHHhhcccc----------c------CCchH----HHHHHHHh
Q 021362 235 NYLFLDGG------VWKDVSSMFDEKWFIEVDLDTAMQRVLKRHIS----------T------GKPPD----VAKWRIEY 288 (313)
Q Consensus 235 ~~lllDE~------~~~~l~~l~~~~i~vtHd~~~~~~rv~griv~----------~------G~~~e----v~~~~~~~ 288 (313)
.+++.|+. -|..+.++++..|+|+.+.+....|++.|... . +-+.+ .+...|..
T Consensus 205 i~lL~~~~~~~~~~~~~~l~~~~D~~I~Vda~~d~~~~R~i~Rd~~~r~~a~~~~~s~~~~y~~~s~~ea~~~a~~~w~~ 284 (321)
T 3tqc_A 205 LNILQTGVRKTLQQLQVFVSDFFDFSLFVDAQAQVIQKWYIDRVLSFWRTTFKDPHSYFHYLTQMSETEVAAFAKHVWNE 284 (321)
T ss_dssp TTTTCCCCCSSSSSCCCCGGGGCSEEEEEECCHHHHHHHHHHHHHHHHHTGGGSTTSTTGGGGGSCHHHHHHHHHHHHHH
T ss_pred cccccccccccccchhhhhhhhcCeEEEEECCHHHHHHHHHHhcchhhhhhccChHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 99999862 22347788899999999999999877633321 1 33322 35566788
Q ss_pred cCCchhH-HhhhcccCccEEeecC
Q 021362 289 NDRPNAE-LIMKSKKNADLVIKSI 311 (313)
Q Consensus 289 ~~~~~~~-~i~~~~~~ad~ii~~~ 311 (313)
.+.||.+ +|+|++..||+|++.-
T Consensus 285 ~~~pn~~~~I~ptr~~Adlil~~g 308 (321)
T 3tqc_A 285 INKVNLMENILPYKNRAQLILEKA 308 (321)
T ss_dssp THHHHHHHHTGGGGGGCSEEEEEC
T ss_pred ccccCHHHhCccCccCceEEEecC
Confidence 8999987 9999999999999753
|
| >3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.81 E-value=8.4e-21 Score=172.43 Aligned_cols=143 Identities=13% Similarity=0.056 Sum_probs=89.0
Q ss_pred EEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCC-----CCeEEEEecCCCCCCcccCCcccChHHHHHhcCCC
Q 021362 109 IVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP-----PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAP 183 (313)
Q Consensus 109 iv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~-----~~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~ 183 (313)
.++|+||||||||||+|+|+|+.. |++|+|.++|.+. .+.+++++|+..... .+|+.||+.++....+
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~~---~~~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~--~ltv~d~~~~g~~~~~-- 76 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQV---SRKASSWNREEKIPKTVEIKAIGHVIEEGGVKM--KLTVIDTPGFGDQINN-- 76 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHC---------------CCCCCSCCEEEESCC----CC--EEEEECCCC--CCSBC--
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC---CCCCccccCCcccCcceeeeeeEEEeecCCCcC--CceEEechhhhhhccc--
Confidence 589999999999999999999999 9999999998653 246899999865433 4899999987643322
Q ss_pred CCccHHHHHHHHHHhhcCCCccCCCCCCcCCCcchhhhhhccCceEEEEcCCccccChhhHHHHHhhcc--ceEEEEcCh
Q 021362 184 WTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFD--EKWFIEVDL 261 (313)
Q Consensus 184 ~~~~~~~~~~~l~~l~~~~~~~~~~LSgG~kqRv~ia~al~~~ar~Li~d~~~lllDE~~~~~l~~l~~--~~i~vtHd~ 261 (313)
....+.+.+.++ ....+....+|||||+||+++|+++ +.++++||+.-.+|+.-.+.++.+.+ ..++|.|..
T Consensus 77 -~~~~~~i~~~~~--~~~~~~~~~~LS~G~~qrv~iaRal---~~lllldep~~gL~~lD~~~l~~L~~~~~vI~Vi~K~ 150 (270)
T 3sop_A 77 -ENCWEPIEKYIN--EQYEKFLKEEVNIARKKRIPDTRVH---CCLYFISPTGHSLRPLDLEFMKHLSKVVNIIPVIAKA 150 (270)
T ss_dssp -TTCSHHHHHHHH--HHHHHHHHHHSCTTCCSSCCCCSCC---EEEEEECCCSSSCCHHHHHHHHHHHTTSEEEEEETTG
T ss_pred -HHHHHHHHHHHH--HHHHhhhHHhcCcccchhhhhheee---eeeEEEecCCCcCCHHHHHHHHHHHhcCcEEEEEecc
Confidence 222233433333 1222344569999999999999987 45899999988898844455555443 356777766
Q ss_pred HHH
Q 021362 262 DTA 264 (313)
Q Consensus 262 ~~~ 264 (313)
+..
T Consensus 151 D~l 153 (270)
T 3sop_A 151 DTM 153 (270)
T ss_dssp GGS
T ss_pred ccC
Confidence 533
|
| >2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A* | Back alignment and structure |
|---|
Probab=99.81 E-value=3.4e-20 Score=173.27 Aligned_cols=216 Identities=30% Similarity=0.488 Sum_probs=171.7
Q ss_pred cccccccccCCCcE--EEEECCCCCcHHHHHHHHHHHhcccC--------------------------------------
Q 021362 96 PTSALASNVNVKHI--VGLAGPPGAGKSTLAAEVVRRINKIW-------------------------------------- 135 (313)
Q Consensus 96 ~L~~vsl~i~~Gei--v~l~GpNGsGKSTLlk~l~gl~~~~~-------------------------------------- 135 (313)
+++.+++.+++|++ ++|+|++||||||+.++|++.+...+
T Consensus 11 il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~l~~~f~~l~a~~~g~~~ir~~~~~a~d~D~~I~~~~g~~i~~i 90 (359)
T 2ga8_A 11 VLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQIINEKYHTFLSEHPNVIEVNDRLKPMVNLVDSLKTLQPNKVAEM 90 (359)
T ss_dssp HHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHHHHHHHHHHHHHSTTCCCEECTTSCCCCSSTTSEECCHHHHHHH
T ss_pred HHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHHhCCCeeeecccccchHHHHHHHHhhhhhhhHHHHHhCccHHHH
Confidence 78889999999998 99999999999999999999764211
Q ss_pred -CCCce-------------------------------------eecCCC----CCC-------CeEEEEecCCCCCCccc
Q 021362 136 -PQKAS-------------------------------------SFDSQV----KPP-------DVATVLPMDGFHLYLSQ 166 (313)
Q Consensus 136 -p~~G~-------------------------------------i~~~g~----~~~-------~~i~~v~qd~~~~~~~~ 166 (313)
-..|+ |.+... .+. ..+.++++|+|+++...
T Consensus 91 f~~~ge~fr~~E~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~vi~mDgFh~~~~~ 170 (359)
T 2ga8_A 91 IENQGLFKDHVEDVNFQPVKYSALTSNNEECTAVVARGGTANAIRIAAVDNPVNVNKLAQDSINIAQIVPMDGFHLSRRC 170 (359)
T ss_dssp HHTTTCCGGGTTCTTCCCEEEEC-----CCCEEEECTTGGGGCEEECC------------CCCCSEEEEEGGGGBCCHHH
T ss_pred HHHhcccchHHHhhhcccceeecccCCcccccccccccccccccccccccccccccccccccCCeEEEEecCcCCCCHHH
Confidence 00111 000000 001 24778999999988766
Q ss_pred CCcccChHHHHHhcCCCCCccHHHHHHHHHHhhcC-----------------------------CCccCCCCCCcCCCcc
Q 021362 167 LDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ-----------------------------GSVYAPSFDHGVGDPV 217 (313)
Q Consensus 167 ltv~e~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~-----------------------------~~~~~~~LSgG~kqRv 217 (313)
+.-+++.......+|.|.+++...+.+.++.|... ....+|.|+.....++
T Consensus 171 L~~~~d~~~~~~rrG~P~tfD~~~l~~~l~~L~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~v~~P~yD~~~~d~~ 250 (359)
T 2ga8_A 171 LDLFKDPQTAHKRRGSPSTFDSNNFLQLCKILAKTSLCKVSSHHKFYSTSSVFEKLSKTFSQTIPDIFVPGFNHALKDPT 250 (359)
T ss_dssp HTTSSSTHHHHTTTTSGGGBCHHHHHHHHHHHHHHHTSCCC-------CCCHHHHHHTCEETTCCCEEEEEEETTTTEEE
T ss_pred HhhccCcchhhccCCCCccccHHHHHHHHHHHHcCCcccccccccccccccccccccccccccCceEeeccccCccCCCC
Confidence 66665554456678999999999988888887633 3456789999988888
Q ss_pred hhhhhhccCceEEEEcCCccccChhhHHHHHhhcc-----ceEEEEcChHHHHHHHhhcccccCC--chHHHHHHHHhcC
Q 021362 218 EDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFD-----EKWFIEVDLDTAMQRVLKRHISTGK--PPDVAKWRIEYND 290 (313)
Q Consensus 218 ~ia~al~~~ar~Li~d~~~lllDE~~~~~l~~l~~-----~~i~vtHd~~~~~~rv~griv~~G~--~~ev~~~~~~~~~ 290 (313)
.-...+...++++|+|+.++++++.-|..|.++++ ..|||+-+.++..+|++.|.+..|. ..+-+.+++..++
T Consensus 251 ~~~~~v~~~~~iVIvEGi~LL~e~~~w~~l~~l~D~~~~~~~i~Vdad~ev~~~Rli~R~~~~Gl~~s~eea~~r~~~~d 330 (359)
T 2ga8_A 251 PDQYCISKFTRIVILEGLYLLYDQENWKKIYKTLADTGALLVYKIDIDYEATEERVAKRHLQSGLVTTIAEGREKFRSND 330 (359)
T ss_dssp EEEEEECTTCCEEEEEESSTTBCSHHHHHHHHHHHTTTCEEEEEEECCHHHHHHHHHHHHHHTTSCSSHHHHHHHHHHCT
T ss_pred CCceEecCCCCEEEEEeehhhccccchhhhhhccccccceEEEEEECCHHHHHHHHHHhhhccCCCCCHHHHHHHHHhcC
Confidence 87777776789999999999999878889999998 6799999999999999988888887 7777888899999
Q ss_pred CchhHHhhhcccCccEEeecC
Q 021362 291 RPNAELIMKSKKNADLVIKSI 311 (313)
Q Consensus 291 ~~~~~~i~~~~~~ad~ii~~~ 311 (313)
.||.++|.|++..||+|++.-
T Consensus 331 ~pN~~~I~~~~~~ad~i~~~~ 351 (359)
T 2ga8_A 331 LLNGRDIDNHLIKVDNIVHIR 351 (359)
T ss_dssp TTSSHHHHHTBCCCTTEEEEE
T ss_pred chhhHhHhhcCCCCCEEEEec
Confidence 999999999999999998753
|
| >1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A* | Back alignment and structure |
|---|
Probab=99.80 E-value=5.2e-22 Score=190.07 Aligned_cols=151 Identities=9% Similarity=0.036 Sum_probs=108.1
Q ss_pred cccccccccCCCc--------------------EEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCCCCeEEEE
Q 021362 96 PTSALASNVNVKH--------------------IVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVL 155 (313)
Q Consensus 96 ~L~~vsl~i~~Ge--------------------iv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~~~~i~~v 155 (313)
+|+++||+|++|+ ++||+||||||||||+|+|+|+++ |++|+|.++|.+..+. +++
T Consensus 38 ~l~~is~~i~~Ge~~~~~~~i~~~L~~~~~~~~~valvG~nGaGKSTLln~L~Gl~~---p~~GsI~~~g~~~t~~-~~v 113 (413)
T 1tq4_A 38 ILNLIELRMRAGNIQLTNSAISDALKEIDSSVLNVAVTGETGSGKSSFINTLRGIGN---EEEGAAKTGVVEVTME-RHP 113 (413)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHCCEEEEEEECTTSSHHHHHHHHHTCCT---TSTTSCCCCC----CC-CEE
T ss_pred HhhhccceecCCCCcccchhhhhhhhhcccCCeEEEEECCCCCcHHHHHHHHhCCCC---ccCceEEECCeeccee-EEe
Confidence 8999999999999 999999999999999999999999 9999999998765433 778
Q ss_pred ecCCCCCCcccCCcccChHHHHHhcCCCCCccHHHHHHHHHHhhcCC-CccCCCCCCc--CCCcchhhhhhcc-------
Q 021362 156 PMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQG-SVYAPSFDHG--VGDPVEDDILVGL------- 225 (313)
Q Consensus 156 ~qd~~~~~~~~ltv~e~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~-~~~~~~LSgG--~kqRv~ia~al~~------- 225 (313)
+|++. + +.++++|++.+.. + ..++.++++.++... +..+ .||+| |+||+.||++++.
T Consensus 114 ~q~~~-~--~~ltv~D~~g~~~-----~----~~~~~~~L~~~~L~~~~~~~-~lS~G~~~kqrv~la~aL~~~~~p~~l 180 (413)
T 1tq4_A 114 YKHPN-I--PNVVFWDLPGIGS-----T----NFPPDTYLEKMKFYEYDFFI-IISATRFKKNDIDIAKAISMMKKEFYF 180 (413)
T ss_dssp EECSS-C--TTEEEEECCCGGG-----S----SCCHHHHHHHTTGGGCSEEE-EEESSCCCHHHHHHHHHHHHTTCEEEE
T ss_pred ccccc-c--CCeeehHhhcccc-----h----HHHHHHHHHHcCCCccCCeE-EeCCCCccHHHHHHHHHHHhcCCCeEE
Confidence 88843 2 2478999875531 1 124567778777432 3333 39999 9999999999987
Q ss_pred ---CceEEEEcCCccccCh----hhHHHHHhhc-----c------ceE-EEEcChHH
Q 021362 226 ---QHKVVIVDGNYLFLDG----GVWKDVSSMF-----D------EKW-FIEVDLDT 263 (313)
Q Consensus 226 ---~ar~Li~d~~~lllDE----~~~~~l~~l~-----~------~~i-~vtHd~~~ 263 (313)
+++++++|+|+..||. .+++.|+++. + .++ +.+|+++.
T Consensus 181 V~tkpdlllLDEPtsgLD~~~~~~l~~~l~~l~~~~l~~~g~~~~~iiliSsh~l~~ 237 (413)
T 1tq4_A 181 VRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFRENGIAEPPIFLLSNKNVCH 237 (413)
T ss_dssp EECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHHHTTCSSCCEEECCTTCTTS
T ss_pred EEecCcccccCcccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCCcEEEEecCcCCc
Confidence 4444445555555554 4566666653 1 223 67787665
|
| >4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.80 E-value=1e-20 Score=180.96 Aligned_cols=58 Identities=16% Similarity=0.036 Sum_probs=49.2
Q ss_pred CCCcCCCcchhhhhhccCc--eEEEEcCCccccCh----hhHHHHHhhc--cceEEEEcChHHHHH
Q 021362 209 FDHGVGDPVEDDILVGLQH--KVVIVDGNYLFLDG----GVWKDVSSMF--DEKWFIEVDLDTAMQ 266 (313)
Q Consensus 209 LSgG~kqRv~ia~al~~~a--r~Li~d~~~lllDE----~~~~~l~~l~--~~~i~vtHd~~~~~~ 266 (313)
||||||||++||++++.++ ++|++|++...||. .+.+.|+++. ..+++||||++++..
T Consensus 296 lSgGe~qrl~lA~~l~~~~~~~~LlLDEpt~~LD~~~~~~l~~~L~~l~~~~~vi~itH~~~~~~~ 361 (415)
T 4aby_A 296 ASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLADTRQVLVVTHLAQIAAR 361 (415)
T ss_dssp SCHHHHHHHHHHHHHHHCCSSSEEEESSTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSCHHHHTT
T ss_pred cCHhHHHHHHHHHHHHhCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHhCCCEEEEEeCcHHHHhh
Confidence 7999999999999999999 99999999999999 5666666665 235799999987643
|
| >1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.79 E-value=1.7e-21 Score=171.37 Aligned_cols=154 Identities=13% Similarity=0.011 Sum_probs=92.5
Q ss_pred cccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCC---------CCeEEEEecCCCCCCccc
Q 021362 96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP---------PDVATVLPMDGFHLYLSQ 166 (313)
Q Consensus 96 ~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~---------~~~i~~v~qd~~~~~~~~ 166 (313)
-|+|+||+|++|++++|+||||||||||+++|+|++ | |+|.+ |.+. .+.++|++|+...+..
T Consensus 12 ~l~~isl~i~~G~~~~lvGpsGsGKSTLl~~L~g~~----p--G~i~~-g~~~~~~~~~~~~~~~i~~~~~~~~~~~~-- 82 (218)
T 1z6g_A 12 SGLVPRGSMNNIYPLVICGPSGVGKGTLIKKLLNEF----P--NYFYF-SVSCTTRKKREKEKEGVDYYFIDKTIFED-- 82 (218)
T ss_dssp ----------CCCCEEEECSTTSSHHHHHHHHHHHS----T--TTEEE-CCCEECSCCCSSCCBTTTBEECCHHHHHH--
T ss_pred cccCCceecCCCCEEEEECCCCCCHHHHHHHHHhhC----C--CcEEE-eecccCCCCCcccccCCeEEECCHHHHHH--
Confidence 799999999999999999999999999999999987 7 99988 5431 2347788887543221
Q ss_pred CC-cccChH---HHHHhcCCCCCccHHHHHHHHHHhhcCCCccCCCCCCcCCCcchhhhhhccCceEEEEcCCccccCh-
Q 021362 167 LD-AMEDPK---EAHARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDG- 241 (313)
Q Consensus 167 lt-v~e~~~---~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~LSgG~kqRv~ia~al~~~ar~Li~d~~~lllDE- 241 (313)
++ ..+++. +....++. ....+.++++..... .....|||||+||++++ ....+++++.+|++++|||
T Consensus 83 ~~~~~~~l~~~~~~~~~~g~----~~~~i~~~l~~~~~~--il~~~lsggq~qR~~i~--~~~~~~~ll~~~~~~~Lde~ 154 (218)
T 1z6g_A 83 KLKNEDFLEYDNYANNFYGT----LKSEYDKAKEQNKIC--LFEMNINGVKQLKKSTH--IKNALYIFIKPPSTDVLLSR 154 (218)
T ss_dssp HHHTTCEEEEEEETTEEEEE----EHHHHHHHHHTTCEE--EEEECHHHHHHHTTCSS--CCSCEEEEEECSCHHHHHHH
T ss_pred hhhccchhhhhhcccccCCC----cHHHHHHHHhCCCcE--EEEecHHHHHHHHHHhc--CCCcEEEEEeCcCHHHHHHH
Confidence 22 122221 11111221 233455566543311 11147899999999984 2223788888899999999
Q ss_pred ----------hhHHHHHhhc----------cceEEEEcChHHHHH
Q 021362 242 ----------GVWKDVSSMF----------DEKWFIEVDLDTAMQ 266 (313)
Q Consensus 242 ----------~~~~~l~~l~----------~~~i~vtHd~~~~~~ 266 (313)
.+.+.+.... -..|+++||++++..
T Consensus 155 ~~~~d~~~~~~i~~~l~~~~~~~~~~h~~~~d~iiv~~~~~ea~~ 199 (218)
T 1z6g_A 155 LLTRNTENQEQIQKRMEQLNIELHEANLLNFNLSIINDDLTLTYQ 199 (218)
T ss_dssp HHHTCCCCHHHHHHHHHHHHHHHHHHTTSCCSEEEECSSHHHHHH
T ss_pred HHhcCCCCHHHHHHHHHHHHHHHHhhcccCCCEEEECCCHHHHHH
Confidence 2333343221 124799999999887
|
| >2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=99.77 E-value=1.2e-21 Score=189.27 Aligned_cols=174 Identities=9% Similarity=-0.034 Sum_probs=122.0
Q ss_pred cEEEEccceEEcc-ccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCC-------
Q 021362 76 PVVEARCMDEVYD-ALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK------- 147 (313)
Q Consensus 76 ~~l~~~~l~~~y~-~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~------- 147 (313)
++++++++++.|+ +.. +|+++ |+|.+|++++|+||||||||||+++|+|+.+ |+.|.|.+.|+.
T Consensus 130 ~~l~~~~v~~~~~tg~~----vld~v-l~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~~---~~~G~i~~~G~r~~ev~~~ 201 (438)
T 2dpy_A 130 NPLQRTPIEHVLDTGVR----AINAL-LTVGRGQRMGLFAGSGVGKSVLLGMMARYTR---ADVIVVGLIGERGREVKDF 201 (438)
T ss_dssp CTTTSCCCCSBCCCSCH----HHHHH-SCCBTTCEEEEEECTTSSHHHHHHHHHHHSC---CSEEEEEEESCCHHHHHHH
T ss_pred CceEEeccceecCCCce----EEeee-EEecCCCEEEEECCCCCCHHHHHHHHhcccC---CCeEEEEEeceecHHHHHH
Confidence 3688999999997 444 99999 9999999999999999999999999999999 999999999872
Q ss_pred ---------CCCeEEEEecCCCCCCcccCCcccChHHHHHhcCCCCCccHHHHHHHHHHhhcCCCccCCCCCCcCCCcch
Q 021362 148 ---------PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVE 218 (313)
Q Consensus 148 ---------~~~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~LSgG~kqRv~ 218 (313)
..+.++|++|++.... .++++.+|+.+....+.... . .+.... .....||+|| ||++
T Consensus 202 ~~~~~~~~~l~r~i~~v~q~~~~~~-~~~~v~~~~~~~ae~~~~~~-~----------~v~~~l-d~l~~lS~g~-qrvs 267 (438)
T 2dpy_A 202 IENILGPDGRARSVVIAAPADVSPL-LRMQGAAYATRIAEDFRDRG-Q----------HVLLIM-DSLTRYAMAQ-REIA 267 (438)
T ss_dssp HHTTTHHHHHHTEEEEEECTTSCHH-HHHHHHHHHHHHHHHHHTTT-C----------EEEEEE-ECHHHHHHHH-HHHH
T ss_pred HHhhccccccCceEEEEECCCCCHH-HHHHHHHHHHHHHHHHHhCC-C----------CHHHHH-HhHHHHHHHH-HHHH
Confidence 1245899999643322 24788888877654332100 0 000000 1245789999 9999
Q ss_pred hhhhhccCceEEEEcCC-ccccCh----hhHHHHHhhcc-----c-------eEEEEcChHHHHH-HHh----hcccccC
Q 021362 219 DDILVGLQHKVVIVDGN-YLFLDG----GVWKDVSSMFD-----E-------KWFIEVDLDTAMQ-RVL----KRHISTG 276 (313)
Q Consensus 219 ia~al~~~ar~Li~d~~-~lllDE----~~~~~l~~l~~-----~-------~i~vtHd~~~~~~-rv~----griv~~G 276 (313)
+| +.+|+ ...+|. .+.+.+.++.. . .++++||++.... +++ |+++.+|
T Consensus 268 lA----------l~~p~~t~glD~~~~~~l~~ll~r~~~~~~~~GsiT~~~tVlv~tHdl~~~iad~v~~l~dG~Ivl~~ 337 (438)
T 2dpy_A 268 LA----------IGEPPATKGYPPSVFAKLPALVERAGNGIHGGGSITAFYTVLTEGDDQQDPIADSARAILDGHIVLSR 337 (438)
T ss_dssp HH----------TTCCCCSSSCCTTHHHHHHHHHTTCSCCSTTSCEEEEEEEEECSSSCSCCHHHHHHHHHSSEEEEECH
T ss_pred HH----------hCCCcccccCCHHHHHHHHHHHHHHHhccCCCCcccceeEEEEeCCCccchhhceEEEEeCcEEEEeC
Confidence 95 33444 778898 44555555544 1 2477899973322 443 7888777
Q ss_pred CchHH
Q 021362 277 KPPDV 281 (313)
Q Consensus 277 ~~~ev 281 (313)
++.++
T Consensus 338 ~~~~~ 342 (438)
T 2dpy_A 338 RLAEA 342 (438)
T ss_dssp HHHHT
T ss_pred CHHHc
Confidence 66554
|
| >1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A | Back alignment and structure |
|---|
Probab=99.77 E-value=5.9e-21 Score=166.23 Aligned_cols=146 Identities=16% Similarity=0.086 Sum_probs=81.0
Q ss_pred cccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCC----CCCeEEEEecCCCCCCcccCCccc
Q 021362 96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK----PPDVATVLPMDGFHLYLSQLDAME 171 (313)
Q Consensus 96 ~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~----~~~~i~~v~qd~~~~~~~~ltv~e 171 (313)
+++| .+|++|++++|+||||||||||+|+|+|+++ ...+.+.+.+.. ..+.++|+||+...+. .+++.+
T Consensus 11 ~~~~--~~i~~Gei~~l~GpnGsGKSTLl~~l~gl~~---~i~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~--~~~~~~ 83 (207)
T 1znw_A 11 TARG--QPAAVGRVVVLSGPSAVGKSTVVRCLRERIP---NLHFSVSATTRAPRPGEVDGVDYHFIDPTRFQ--QLIDQG 83 (207)
T ss_dssp ----------CCCEEEEECSTTSSHHHHHHHHHHHST---TCEECCCEESSCCCTTCCBTTTBEECCHHHHH--HHHHTT
T ss_pred CCCC--CCCCCCCEEEEECCCCCCHHHHHHHHHhhCC---ceEEcccccccCCcccccCCCeeEecCHHHHH--HHHhcC
Confidence 7777 7899999999999999999999999999985 333332222211 1234789999854332 366666
Q ss_pred ChHHHH------HhcCCCCCccHHHHHHH------HHHhhc--CCCccCCCCCCcCCCcchhhhhhccCceEEEEcCCcc
Q 021362 172 DPKEAH------ARRGAPWTFNPLLLLNC------LKNLRN--QGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYL 237 (313)
Q Consensus 172 ~~~~~~------~~~~~~~~~~~~~~~~~------l~~l~~--~~~~~~~~LSgG~kqRv~ia~al~~~ar~Li~d~~~l 237 (313)
++.... ..++.+.....+++.+. ++.++. ..+.++.+|| +++.+|+++
T Consensus 84 ~l~~~~~~~~n~~~~g~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~lS------------------~l~~~p~~~ 145 (207)
T 1znw_A 84 ELLEWAEIHGGLHRSGTLAQPVRAAAATGVPVLIEVDLAGARAIKKTMPEAVT------------------VFLAPPSWQ 145 (207)
T ss_dssp CEEEEEEEGGGTEEEEEEHHHHHHHHHHTCCEEEECCHHHHHHHHHHCTTSEE------------------EEEECSCHH
T ss_pred CceeehhhcCchhhcCCcHHHHHHHHHcCCeEEEEeCHHHHHHHHHhcCCcEE------------------EEEECCCHH
Confidence 653211 11222211112222222 222221 1122333444 788899999
Q ss_pred ccChh---------------hHHHHHhhcc----ceEEEEcChHHHHH
Q 021362 238 FLDGG---------------VWKDVSSMFD----EKWFIEVDLDTAMQ 266 (313)
Q Consensus 238 llDE~---------------~~~~l~~l~~----~~i~vtHd~~~~~~ 266 (313)
+|||. +++.++++.. ..+++|||++++..
T Consensus 146 ~LDep~~~l~~~~d~~~~~~l~~~l~~l~~~~g~tvi~vtHdl~~~~~ 193 (207)
T 1znw_A 146 DLQARLIGRGTETADVIQRRLDTARIELAAQGDFDKVVVNRRLESACA 193 (207)
T ss_dssp HHHHHHHTTSCSCHHHHHHHHHHHHHHHHGGGGSSEEEECSSHHHHHH
T ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhccCcEEEECCCHHHHHH
Confidence 99882 3444445432 24799999999976
|
| >3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.76 E-value=2.6e-20 Score=171.82 Aligned_cols=156 Identities=9% Similarity=0.036 Sum_probs=110.7
Q ss_pred cceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCCCC-----------
Q 021362 82 CMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPD----------- 150 (313)
Q Consensus 82 ~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~~~----------- 150 (313)
.+.+.|+... .++.+||++++|++++|+||||||||||+++|+|+++ |++|+|.+.|.+..+
T Consensus 79 ~l~~~l~~~~----~~~~l~~~~~~g~vi~lvG~nGsGKTTll~~Lag~l~---~~~g~V~l~g~d~~r~~a~~ql~~~~ 151 (302)
T 3b9q_A 79 SVLEMLAKKN----SKTELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLK---NEGTKVLMAAGDTFRAAASDQLEIWA 151 (302)
T ss_dssp HHHHHHCC------CCCSCCCCSSSCEEEEEECCTTSCHHHHHHHHHHHHH---HTTCCEEEECCCCSCHHHHHHHHHHH
T ss_pred HHHHHhCCcc----cccccccccCCCcEEEEEcCCCCCHHHHHHHHHHHHH---HcCCeEEEEeecccchhHHHHHHHHH
Confidence 3444454433 4567999999999999999999999999999999999 999999999877432
Q ss_pred ---eEEEEecCCC-CCCcccCCcccChHHHHHhcCCCCCccHHHHHHHHHHhhc--CCCccCCCCCCcCCCcchhhhhhc
Q 021362 151 ---VATVLPMDGF-HLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDILVG 224 (313)
Q Consensus 151 ---~i~~v~qd~~-~~~~~~ltv~e~~~~~~~~~~~~~~~~~~~~~~~l~~l~~--~~~~~~~~LSgG~kqRv~ia~al~ 224 (313)
.++|++|+.. ..+ .+++++++.++... +. + ..+++.++. ..+.++.+|| +||++||++++
T Consensus 152 ~~~~i~~v~q~~~~~~~--~~~v~e~l~~~~~~-~~----d----~~lldt~gl~~~~~~~~~eLS---kqr~~iaral~ 217 (302)
T 3b9q_A 152 ERTGCEIVVAEGDKAKA--ATVLSKAVKRGKEE-GY----D----VVLCDTSGRLHTNYSLMEELI---ACKKAVGKIVS 217 (302)
T ss_dssp HHHTCEEECCC--CCCH--HHHHHHHHHHHHHT-TC----S----EEEECCCCCSSCCHHHHHHHH---HHHHHHHTTST
T ss_pred HhcCceEEEecCCccCH--HHHHHHHHHHHHHc-CC----c----chHHhcCCCCcchhHHHHHHH---HHHHHHHHhhc
Confidence 3789999854 332 47899998875431 11 1 012333442 2234555899 89999999999
Q ss_pred cCce--EEEEcCCccccChh-hHHHHHhh-ccceEEEEc
Q 021362 225 LQHK--VVIVDGNYLFLDGG-VWKDVSSM-FDEKWFIEV 259 (313)
Q Consensus 225 ~~ar--~Li~d~~~lllDE~-~~~~l~~l-~~~~i~vtH 259 (313)
.+++ +|++| ++..+|.. ..+.+.+. --.++++||
T Consensus 218 ~~P~e~lLvLD-ptsglD~~~~~~~~~~~~g~t~iiiTh 255 (302)
T 3b9q_A 218 GAPNEILLVLD-GNTGLNMLPQAREFNEVVGITGLILTK 255 (302)
T ss_dssp TCCSEEEEEEE-GGGGGGGHHHHHHHHHHTCCCEEEEEC
T ss_pred cCCCeeEEEEe-CCCCcCHHHHHHHHHHhcCCCEEEEeC
Confidence 9999 99999 99999972 22222221 223589999
|
| >2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A | Back alignment and structure |
|---|
Probab=99.74 E-value=1.5e-18 Score=161.93 Aligned_cols=148 Identities=8% Similarity=-0.015 Sum_probs=102.3
Q ss_pred EccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCCCCeEEEEecCC
Q 021362 80 ARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDG 159 (313)
Q Consensus 80 ~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~~~~i~~v~qd~ 159 (313)
++++++ | .. ++++++|.+++|++++|+||||||||||+++|+|+++ |++|.|.++|.+..
T Consensus 151 ~~~v~f-y--~~----~l~~l~~~i~~g~~v~i~G~~GsGKTTll~~l~g~~~---~~~g~i~i~~~~e~---------- 210 (330)
T 2pt7_A 151 YNLLDN-K--EQ----AISAIKDGIAIGKNVIVCGGTGSGKTTYIKSIMEFIP---KEERIISIEDTEEI---------- 210 (330)
T ss_dssp TTTSTT-H--HH----HHHHHHHHHHHTCCEEEEESTTSCHHHHHHHGGGGSC---TTSCEEEEESSCCC----------
T ss_pred cCchhh-H--HH----HHhhhhhhccCCCEEEEECCCCCCHHHHHHHHhCCCc---CCCcEEEECCeecc----------
Confidence 556666 6 33 8999999999999999999999999999999999999 99999999875310
Q ss_pred CCCCcccCCcccChHHHHHhcCCCCCccHHHHHHHHHHhhcCCCccCCCCCCcCCCcchhhhhhccCceEEEEcCCcccc
Q 021362 160 FHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFL 239 (313)
Q Consensus 160 ~~~~~~~ltv~e~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~LSgG~kqRv~ia~al~~~ar~Li~d~~~lll 239 (313)
.+.. ..+++.+ .. .|||+||++|++++..++++|++|++..
T Consensus 211 -~~~~----~~~~i~~------~~--------------------------ggg~~~r~~la~aL~~~p~ilildE~~~-- 251 (330)
T 2pt7_A 211 -VFKH----HKNYTQL------FF--------------------------GGNITSADCLKSCLRMRPDRIILGELRS-- 251 (330)
T ss_dssp -CCSS----CSSEEEE------EC--------------------------BTTBCHHHHHHHHTTSCCSEEEECCCCS--
T ss_pred -cccc----chhEEEE------Ee--------------------------CCChhHHHHHHHHhhhCCCEEEEcCCCh--
Confidence 0000 0000000 00 0899999999888888888888877764
Q ss_pred ChhhHHHHHhhccc---eEEEEcChHHHHH--HHh----hcccccCCchHHHHHHHH
Q 021362 240 DGGVWKDVSSMFDE---KWFIEVDLDTAMQ--RVL----KRHISTGKPPDVAKWRIE 287 (313)
Q Consensus 240 DE~~~~~l~~l~~~---~i~vtHd~~~~~~--rv~----griv~~G~~~ev~~~~~~ 287 (313)
.++++.|+.+... .++++|+.+.... |++ |.....+-+.+.+...+.
T Consensus 252 -~e~~~~l~~~~~g~~tvi~t~H~~~~~~~~dri~~l~~g~~~~~~~~~~~i~~~i~ 307 (330)
T 2pt7_A 252 -SEAYDFYNVLCSGHKGTLTTLHAGSSEEAFIRLANMSSSNSAARNIKFESLIEGFK 307 (330)
T ss_dssp -THHHHHHHHHHTTCCCEEEEEECSSHHHHHHHHHHHHHTSGGGTTSCHHHHHHHHH
T ss_pred -HHHHHHHHHHhcCCCEEEEEEcccHHHHHhhhheehhcCCcccCCCCHHHHHHHHH
Confidence 3566667666432 4799999984433 555 433333445555554433
|
| >1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6 | Back alignment and structure |
|---|
Probab=99.74 E-value=1.5e-18 Score=159.06 Aligned_cols=191 Identities=18% Similarity=0.216 Sum_probs=128.0
Q ss_pred cCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCCCCeEEEEecCCCCCCcccCCcccChHHH------H
Q 021362 104 VNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEA------H 177 (313)
Q Consensus 104 i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~~~~i~~v~qd~~~~~~~~ltv~e~~~~~------~ 177 (313)
-.++.++||+|++|||||||++.|.+++. +. |. . .+.+.+|+||+|++.. +.++|+.+. .
T Consensus 28 ~~~~~ii~I~G~sGsGKSTla~~L~~~l~---~~-g~------~-~~~~~iv~~D~f~~~~---~~~~~l~~~~~~~~l~ 93 (290)
T 1odf_A 28 NKCPLFIFFSGPQGSGKSFTSIQIYNHLM---EK-YG------G-EKSIGYASIDDFYLTH---EDQLKLNEQFKNNKLL 93 (290)
T ss_dssp CCSCEEEEEECCTTSSHHHHHHHHHHHHH---HH-HG------G-GSCEEEEEGGGGBCCH---HHHHHHHHHTTTCGGG
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHhh---hc-CC------C-CceEEEeccccccCCh---HHHHHHhccccccchh
Confidence 46789999999999999999999999997 42 20 0 1235556999887643 566776654 2
Q ss_pred HhcCCCCCccHHHHHHHHHHhhcC------CCc----cCCCCCCcCCCcchhhhhhccCceEEEEcCCccccChhh----
Q 021362 178 ARRGAPWTFNPLLLLNCLKNLRNQ------GSV----YAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGV---- 243 (313)
Q Consensus 178 ~~~~~~~~~~~~~~~~~l~~l~~~------~~~----~~~~LSgG~kqRv~ia~al~~~ar~Li~d~~~lllDE~~---- 243 (313)
..+|.+.+.+.+.+.+.++.+..+ ... +-..+||||+||+++|.+...++++||+|+.++++|+..
T Consensus 94 ~~~g~p~a~d~~~l~~~l~~l~~g~~t~~~~~v~~p~y~~~~sgGq~~R~~~a~~~~~~~~IlIlEG~~~~ld~~~~~~~ 173 (290)
T 1odf_A 94 QGRGLPGTHDMKLLQEVLNTIFNNNEHPDQDTVVLPKYDKSQFKGEGDRCPTGQKIKLPVDIFILEGWFLGFNPILQGIE 173 (290)
T ss_dssp SSSCSTTSBCHHHHHHHHHHHTC------CCEEEECCEETTHHHHTCEECSSCEEEESSCSEEEEEESSTTCCCCCSCTT
T ss_pred hhccCcchhHHHHHHHHHHHhhccCccccCcceeeccCccccCCccccccccccceEcCCCEEEEeCccccCCccchhhh
Confidence 234567888888899999988754 212 233889999999998733333899999999999999742
Q ss_pred ------------HHH-------HHhhccce---EEEEc-ChHHHHHHHhhc--c-c-cc--CCchHHHHHHHHhcCCchh
Q 021362 244 ------------WKD-------VSSMFDEK---WFIEV-DLDTAMQRVLKR--H-I-ST--GKPPDVAKWRIEYNDRPNA 294 (313)
Q Consensus 244 ------------~~~-------l~~l~~~~---i~vtH-d~~~~~~rv~gr--i-v-~~--G~~~ev~~~~~~~~~~~~~ 294 (313)
.+. |.++.+.. |+++- +.+.+.++.+.| . + .. |...|-+. .|...++|++
T Consensus 174 ~~~~~~~~l~~~n~~l~~y~~~l~~~~D~~d~~I~vd~~~~~~i~rWRi~re~~l~~~r~~g~s~e~v~-~~~~~~~p~y 252 (290)
T 1odf_A 174 NNDLLTGDMVDVNAKLFFYSDLLWRNPEIKSLGIVFTTDNINNVYGWRLQQEHELISKVGKGMTDEQVH-AFVDRYMPSY 252 (290)
T ss_dssp TCSSSCTTHHHHHHHHHHHHHHTTTCTTCCEEEEEEEESCTTHHHHHHHHHHHHHHHHHSCSCCHHHHH-HHHHTTHHHH
T ss_pred hcccchhhHHHHHHHHHHHHHHHHhhhhhhcceEEEECCCHHHHHHHHHHHHHHHHHhccCCCCHHHHH-HHHHHhcchH
Confidence 222 23334555 99988 555555423432 2 2 23 66665554 4555777765
Q ss_pred H-Hhh-------hcccCccEEeec
Q 021362 295 E-LIM-------KSKKNADLVIKS 310 (313)
Q Consensus 295 ~-~i~-------~~~~~ad~ii~~ 310 (313)
+ |+. |.+ .||+|+..
T Consensus 253 ~~~~~~~~~~~~~~~-~adlvl~~ 275 (290)
T 1odf_A 253 KLYLNDFVRSESLGS-IATLTLGI 275 (290)
T ss_dssp HHHHHHHHHHTCSSS-SEEEEEEE
T ss_pred HHHhHHHHHhccCCC-CCCEEEEE
Confidence 5 443 444 79999864
|
| >1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11 | Back alignment and structure |
|---|
Probab=99.74 E-value=7.7e-19 Score=149.84 Aligned_cols=139 Identities=12% Similarity=0.024 Sum_probs=90.9
Q ss_pred EEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCC--CCCCeEEEEecCCCCCCcccCCcccChHHHHHhcCCCCCc
Q 021362 109 IVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQV--KPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTF 186 (313)
Q Consensus 109 iv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~--~~~~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~~~~ 186 (313)
+++|+||||||||||+++|+|++.- .-.|...-.-. ...+.++|++|+. ++.+++. ...+...
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~i--~~~g~~~~~~~~~~~~~~ig~~~~~~--------~~~~~~~---~~~~~~~-- 66 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLGK--RAIGFWTEEVRDPETKKRTGFRIITT--------EGKKKIF---SSKFFTS-- 66 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHGG--GEEEEEEEEEC------CCEEEEEET--------TCCEEEE---EETTCCC--
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCC--cCCCEEhhhhccccccceeEEEeecC--------cHHHHHH---HhhcCCc--
Confidence 6899999999999999999999851 11222110000 1234578888873 2333331 0111100
Q ss_pred cHHHHHHHHHHhhcCCCccCCCCCCcCCCcchhhhh-----hccCceEEEEcC--CccccChhhHHHHHhhccc----eE
Q 021362 187 NPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDIL-----VGLQHKVVIVDG--NYLFLDGGVWKDVSSMFDE----KW 255 (313)
Q Consensus 187 ~~~~~~~~l~~l~~~~~~~~~~LSgG~kqRv~ia~a-----l~~~ar~Li~d~--~~lllDE~~~~~l~~l~~~----~i 255 (313)
....++++.+|||||+||+++|++ ++.+++++++|+ ++..+|+...+.+.++.++ .+
T Consensus 67 ------------~~~~~~~~~~lSgG~~qr~~la~aa~~~~l~~~p~llilDEigp~~~ld~~~~~~l~~~l~~~~~~~i 134 (178)
T 1ye8_A 67 ------------KKLVGSYGVNVQYFEELAIPILERAYREAKKDRRKVIIIDEIGKMELFSKKFRDLVRQIMHDPNVNVV 134 (178)
T ss_dssp ------------SSEETTEEECHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCCSTTGGGCHHHHHHHHHHHTCTTSEEE
T ss_pred ------------cccccccccCcCHHHHHHHHHHhhccccccccCCCEEEEeCCCCcccCCHHHHHHHHHHHhcCCCeEE
Confidence 012345666999999999999996 999999999999 9999999776666666542 46
Q ss_pred EEEc---ChHHHHH---HHhhcccc
Q 021362 256 FIEV---DLDTAMQ---RVLKRHIS 274 (313)
Q Consensus 256 ~vtH---d~~~~~~---rv~griv~ 274 (313)
+++| |++++.. |--|++++
T Consensus 135 ~~~H~~h~~~~~~~i~~r~~~~i~~ 159 (178)
T 1ye8_A 135 ATIPIRDVHPLVKEIRRLPGAVLIE 159 (178)
T ss_dssp EECCSSCCSHHHHHHHTCTTCEEEE
T ss_pred EEEccCCCchHHHHHHhcCCcEEEE
Confidence 7874 8777765 11156664
|
| >3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A* | Back alignment and structure |
|---|
Probab=99.72 E-value=1.7e-18 Score=163.75 Aligned_cols=62 Identities=13% Similarity=0.080 Sum_probs=51.9
Q ss_pred ccCCCCCCcCCCcchhhhhhc------cCceEEEEcCCccccCh----hhHHHHHhhccc---eEEEEcChHHHH
Q 021362 204 VYAPSFDHGVGDPVEDDILVG------LQHKVVIVDGNYLFLDG----GVWKDVSSMFDE---KWFIEVDLDTAM 265 (313)
Q Consensus 204 ~~~~~LSgG~kqRv~ia~al~------~~ar~Li~d~~~lllDE----~~~~~l~~l~~~---~i~vtHd~~~~~ 265 (313)
+++.+|||||+||++||++++ .++++|++|+|+..||+ .+++.|.++.+. +++||||++++.
T Consensus 275 ~~~~~LSgGe~qr~~la~al~~~~~~~~~p~~lllDEpt~~LD~~~~~~~~~~l~~l~~~g~tvi~itH~~~~~~ 349 (365)
T 3qf7_A 275 RPARGLSGGERALISISLAMSLAEVASGRLDAFFIDEGFSSLDTENKEKIASVLKELERLNKVIVFITHDREFSE 349 (365)
T ss_dssp EEGGGSCHHHHHHHHHHHHHHHHHHTTTTCCEEEEESCCTTSCHHHHHHHHHHHHGGGGSSSEEEEEESCHHHHT
T ss_pred CCchhCCHHHHHHHHHHHHHHhhhcccCCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEecchHHHH
Confidence 466699999999999999998 79999999999999999 556666666543 469999999843
|
| >2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A* | Back alignment and structure |
|---|
Probab=99.71 E-value=1.9e-19 Score=169.03 Aligned_cols=168 Identities=11% Similarity=0.061 Sum_probs=110.6
Q ss_pred cEEEEccceEEcc-ccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCC------
Q 021362 76 PVVEARCMDEVYD-ALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP------ 148 (313)
Q Consensus 76 ~~l~~~~l~~~y~-~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~------ 148 (313)
++++++++++.|+ +.. +|+++ |+|.+|+++||+||||||||||+++|+|+.+ |+.|.|.+.|++.
T Consensus 44 ~~i~~~~l~~~~~tg~~----ald~l-l~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~~---~~~g~i~~~G~~~~ev~~~ 115 (347)
T 2obl_A 44 DPLLRQVIDQPFILGVR----AIDGL-LTCGIGQRIGIFAGSGVGKSTLLGMICNGAS---ADIIVLALIGERGREVNEF 115 (347)
T ss_dssp CSTTCCCCCSEECCSCH----HHHHH-SCEETTCEEEEEECTTSSHHHHHHHHHHHSC---CSEEEEEEESCCHHHHHHH
T ss_pred CCeeecccceecCCCCE----EEEee-eeecCCCEEEEECCCCCCHHHHHHHHhcCCC---CCEEEEEEecccHHHHHHH
Confidence 4688999999997 444 99999 9999999999999999999999999999999 9999988877541
Q ss_pred ---------CCeEEEEecCCCCCCcccCCcccChHHHHHhcCCCCCccHHHHHHHHHHhhc-CCC-----ccCCCCCCcC
Q 021362 149 ---------PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN-QGS-----VYAPSFDHGV 213 (313)
Q Consensus 149 ---------~~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~~~~~~~~~~~~l~~l~~-~~~-----~~~~~LSgG~ 213 (313)
.+.+.+++|.+. ...+.+... .....+.+.+.. ..+ ..+..||+||
T Consensus 116 i~~~~~~~~~~~v~~~~~~~~-------~~~~r~~~~------------~~~~~~ae~~~~~~~~vl~~ld~~~~lS~g~ 176 (347)
T 2obl_A 116 LALLPQSTLSKCVLVVTTSDR-------PALERMKAA------------FTATTIAEYFRDQGKNVLLMMDSVTRYARAA 176 (347)
T ss_dssp HTTSCHHHHTTEEEEEECTTS-------CHHHHHHHH------------HHHHHHHHHHHTTTCEEEEEEETHHHHHHHH
T ss_pred HHhhhhhhhhceEEEEECCCC-------CHHHHHHHH------------HHHHHHHHHHHhccccHHHHHhhHHHHHHHH
Confidence 112444444321 111111000 000111111111 111 3456899999
Q ss_pred CCcchhhhhhccCceEEEEcCC-ccccCh----hhHHHHHhhcc--c--------eEEEEcChHHHHH-HHh----hccc
Q 021362 214 GDPVEDDILVGLQHKVVIVDGN-YLFLDG----GVWKDVSSMFD--E--------KWFIEVDLDTAMQ-RVL----KRHI 273 (313)
Q Consensus 214 kqRv~ia~al~~~ar~Li~d~~-~lllDE----~~~~~l~~l~~--~--------~i~vtHd~~~~~~-rv~----griv 273 (313)
||+++| +.+|+ ...+|. .+++.+.++.. . ++++|||+++... +++ |+++
T Consensus 177 -r~v~la----------l~~p~~t~Gldp~~~~~l~~ller~~~~~~GsiT~~~tVl~~thdl~~~i~d~v~~i~dG~Iv 245 (347)
T 2obl_A 177 -RDVGLA----------SGEPDVRGGFPPSVFSSLPKLLERAGPAPKGSITAIYTVLLESDNVNDPIGDEVRSILDGHIV 245 (347)
T ss_dssp -HHHHHH----------TTCCCCBTTBCHHHHHHHHHHHTTCEECSSSEEEEEEEEECCSSCCCCHHHHHHHHHCSEEEE
T ss_pred -HHHHHH----------cCCCCcccCCCHHHHHHHHHHHHHHhCCCCCCeeeEEEEEEeCCCCCChhhhheEEeeCcEEE
Confidence 899993 35677 589999 45555555542 1 2477899984433 544 8888
Q ss_pred ccCCchHH
Q 021362 274 STGKPPDV 281 (313)
Q Consensus 274 ~~G~~~ev 281 (313)
.+|.+.++
T Consensus 246 l~~~l~~~ 253 (347)
T 2obl_A 246 LTRELAEE 253 (347)
T ss_dssp BCHHHHTT
T ss_pred EeCCHHHc
Confidence 87766553
|
| >2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.71 E-value=7.5e-19 Score=165.38 Aligned_cols=145 Identities=9% Similarity=0.021 Sum_probs=106.9
Q ss_pred cccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCCCC--------------eEEEEecCCC-CC
Q 021362 98 SALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPD--------------VATVLPMDGF-HL 162 (313)
Q Consensus 98 ~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~~~--------------~i~~v~qd~~-~~ 162 (313)
..+||++++|++++|+||||||||||+++|+|+++ |++|+|.+.|.+..+ .++|++|+.. ..
T Consensus 148 ~~l~l~~~~g~vi~lvG~nGsGKTTll~~Lag~l~---~~~G~V~l~g~D~~r~~a~eql~~~~~r~~i~~v~q~~~~~~ 224 (359)
T 2og2_A 148 TELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLK---NEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAK 224 (359)
T ss_dssp CSCCCCSSSSEEEEEECCTTSCHHHHHHHHHHHHH---HTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCSSSSCC
T ss_pred CCcceecCCCeEEEEEcCCCChHHHHHHHHHhhcc---ccCCEEEEecccccccchhHHHHHHHHhcCeEEEEecccccC
Confidence 46899999999999999999999999999999999 999999999877432 3789999854 33
Q ss_pred CcccCCcccChHHHHHhcCCCCCccHHHHHHHHHHhhc--CCCccCCCCCCcCCCcchhhhhhccCce--EEEEcCCccc
Q 021362 163 YLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDILVGLQHK--VVIVDGNYLF 238 (313)
Q Consensus 163 ~~~~ltv~e~~~~~~~~~~~~~~~~~~~~~~~l~~l~~--~~~~~~~~LSgG~kqRv~ia~al~~~ar--~Li~d~~~ll 238 (313)
+ .+++++++.++... +. +. .+++.++. ..+.++.+|| +||++||++++..+. +|++| ++..
T Consensus 225 p--~~tv~e~l~~~~~~-~~----d~----~lldt~Gl~~~~~~~~~eLS---kqr~~iaral~~~P~e~lLvLD-pttg 289 (359)
T 2og2_A 225 A--ATVLSKAVKRGKEE-GY----DV----VLCDTSGRLHTNYSLMEELI---ACKKAVGKIVSGAPNEILLVLD-GNTG 289 (359)
T ss_dssp H--HHHHHHHHHHHHHT-TC----SE----EEEECCCCSSCCHHHHHHHH---HHHHHHHHHSTTCCSEEEEEEE-GGGG
T ss_pred h--hhhHHHHHHHHHhC-CC----HH----HHHHhcCCChhhhhHHHHHH---HHHHHHHHHHhcCCCceEEEEc-CCCC
Confidence 2 47889998876431 11 10 12233342 2234555889 899999999999999 99999 8999
Q ss_pred cChh-hHHHHHhh-ccceEEEEcC
Q 021362 239 LDGG-VWKDVSSM-FDEKWFIEVD 260 (313)
Q Consensus 239 lDE~-~~~~l~~l-~~~~i~vtHd 260 (313)
+|.. ..+.+.+. --.++++||.
T Consensus 290 lD~~~~~~~~~~~~g~t~iiiThl 313 (359)
T 2og2_A 290 LNMLPQAREFNEVVGITGLILTKL 313 (359)
T ss_dssp GGGHHHHHHHHHHTCCCEEEEESC
T ss_pred CCHHHHHHHHHHhcCCeEEEEecC
Confidence 9972 22222221 2245899993
|
| >2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A* | Back alignment and structure |
|---|
Probab=99.68 E-value=3.2e-18 Score=157.66 Aligned_cols=156 Identities=12% Similarity=0.029 Sum_probs=78.6
Q ss_pred ccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHH-hcccCCCCceeecCCCCC-----CCeEEE
Q 021362 81 RCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRR-INKIWPQKASSFDSQVKP-----PDVATV 154 (313)
Q Consensus 81 ~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl-~~~~~p~~G~i~~~g~~~-----~~~i~~ 154 (313)
+||++.|+++. ++++++|+| +|+||||||||||+++|.|. +. |++| +.++|.+. .+.+++
T Consensus 2 ~~l~~~~~~~~----~l~~~~~~I------~lvG~nG~GKSTLl~~L~g~~~~---~~~g-i~~~g~~~~~t~~~~~~~~ 67 (301)
T 2qnr_A 2 SNLPNQVHRKS----VKKGFEFTL------MVVGESGLGKSTLINSLFLTDLY---PERV-ISGAAEKIERTVQIEASTV 67 (301)
T ss_dssp --------------------CEEE------EEEEETTSSHHHHHHHHHC----------------------------CEE
T ss_pred CCCcceECCEE----EEcCCCEEE------EEECCCCCCHHHHHHHHhCCCcc---CCCC-cccCCcccCCcceEeeEEE
Confidence 57899999877 999999998 99999999999999999997 66 8999 77666442 134677
Q ss_pred EecCCCCCCcccCCcccChHHHHHhcCCCCCccHHHHHHHHHHhhcCCCccCCCCCCcCCCcchhhhhhccCceEEEEcC
Q 021362 155 LPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDG 234 (313)
Q Consensus 155 v~qd~~~~~~~~ltv~e~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~LSgG~kqRv~ia~al~~~ar~Li~d~ 234 (313)
++|...... .++++|++.++..... .+....+.+.+....+.++.++|||||||+.++++++ +|++++
T Consensus 68 ~~q~~~~~~--~ltv~Dt~g~~~~~~~------~e~~~~l~~~l~~~~~~~~~~~sgg~rqrv~~ara~~----ll~lde 135 (301)
T 2qnr_A 68 EIEERGVKL--RLTVVDTPGYGDAINC------RDCFKTIISYIDEQFERYLHDESGLNRRHIIDNRVHC----CFYFIS 135 (301)
T ss_dssp EEC---CCE--EEEEEEEC-----------------CTTHHHHHHHHHHHHHHHHTSSCCTTCCCCCCCE----EEEEEC
T ss_pred EecCCCccc--CcchhhhhhhhhhcCc------HHHHHHHHHHHHHHHHHHHHHhCHHhhhhhhhhhhhh----eeeeec
Confidence 888644333 4899998876532210 0111112222222234567799999999999966652 888888
Q ss_pred Ccc-ccChhhHHHHHhhccc----eEEEEcChH
Q 021362 235 NYL-FLDGGVWKDVSSMFDE----KWFIEVDLD 262 (313)
Q Consensus 235 ~~l-llDE~~~~~l~~l~~~----~i~vtHd~~ 262 (313)
|.. .||+.-.+.++.+... .++.+||+.
T Consensus 136 Pt~~~Ld~~~~~~l~~l~~~~~iilV~~K~Dl~ 168 (301)
T 2qnr_A 136 PFGHGLKPLDVAFMKAIHNKVNIVPVIAKADTL 168 (301)
T ss_dssp SSSSSCCHHHHHHHHHHTTTSCEEEEECCGGGS
T ss_pred CcccCCCHHHHHHHHHHHhcCCEEEEEEeCCCC
Confidence 876 4898555666666543 247789974
|
| >1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A | Back alignment and structure |
|---|
Probab=99.65 E-value=1.4e-17 Score=139.33 Aligned_cols=87 Identities=18% Similarity=0.130 Sum_probs=71.2
Q ss_pred EEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCCCCe---EEE
Q 021362 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDV---ATV 154 (313)
Q Consensus 78 l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~~~~---i~~ 154 (313)
++.+++++.|++.. +++++||++++|++++|+||||||||||+|+|+|++ |++|+|.++|.+.... ..+
T Consensus 8 ~~~~~~~~~~g~~~----~l~~vsl~i~~Ge~v~L~G~nGaGKTTLlr~l~g~l----~~~G~V~~~g~~i~~~~~~~~~ 79 (158)
T 1htw_A 8 IPDEFSMLRFGKKF----AEILLKLHTEKAIMVYLNGDLGAGKTTLTRGMLQGI----GHQGNVKSPTYTLVEEYNIAGK 79 (158)
T ss_dssp ECSHHHHHHHHHHH----HHHHHHHCCSSCEEEEEECSTTSSHHHHHHHHHHHT----TCCSCCCCCTTTCEEEEEETTE
T ss_pred cCCHHHHHHHHHHH----HHhccccccCCCCEEEEECCCCCCHHHHHHHHHHhC----CCCCeEEECCEeeeeeccCCCc
Confidence 44567889998766 999999999999999999999999999999999998 8999999999765211 126
Q ss_pred EecCCCCCCcccCCcccChHH
Q 021362 155 LPMDGFHLYLSQLDAMEDPKE 175 (313)
Q Consensus 155 v~qd~~~~~~~~ltv~e~~~~ 175 (313)
++|+.. ++ .+|+.||+.+
T Consensus 80 ~~q~~~-l~--~ltv~e~l~~ 97 (158)
T 1htw_A 80 MIYHFD-LY--RLADPEELEF 97 (158)
T ss_dssp EEEEEE-CT--TCSCTTHHHH
T ss_pred ceeccc-cc--cCCcHHHHHH
Confidence 788743 33 3899999854
|
| >1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=99.65 E-value=3.3e-17 Score=152.13 Aligned_cols=62 Identities=11% Similarity=-0.048 Sum_probs=49.5
Q ss_pred CccCCCCCCcCCCcchhhhhhc----cCceEEEEcCCccccCh----hhHHHHHhhcc--ceEEEEcChHHH
Q 021362 203 SVYAPSFDHGVGDPVEDDILVG----LQHKVVIVDGNYLFLDG----GVWKDVSSMFD--EKWFIEVDLDTA 264 (313)
Q Consensus 203 ~~~~~~LSgG~kqRv~ia~al~----~~ar~Li~d~~~lllDE----~~~~~l~~l~~--~~i~vtHd~~~~ 264 (313)
+..+.+||+|||||++||++++ .++++|++|+|+..||+ .+++.|+++.. ..+++||+.+..
T Consensus 214 ~~~~~~lS~Gq~q~v~ia~~l~~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~vi~~tH~~~~~ 285 (322)
T 1e69_A 214 DQKLSLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKENSKHTQFIVITHNKIVM 285 (322)
T ss_dssp CCBGGGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHHHHHHHTTTSEEEEECCCTTGG
T ss_pred cCchhhCCHHHHHHHHHHHHHHHhccCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEECCHHHH
Confidence 3456699999999999999987 57899999999999999 45555666533 357999997543
|
| >2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B* | Back alignment and structure |
|---|
Probab=99.62 E-value=2.9e-17 Score=172.78 Aligned_cols=147 Identities=15% Similarity=0.108 Sum_probs=103.6
Q ss_pred cEEEEcc-----ceEEc-cccccccccccccccccCC-------CcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceee
Q 021362 76 PVVEARC-----MDEVY-DALAQRLLPTSALASNVNV-------KHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSF 142 (313)
Q Consensus 76 ~~l~~~~-----l~~~y-~~~~~~~~~L~~vsl~i~~-------Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~ 142 (313)
++|++++ |++.| ++.. +++|++|++++ |++++|+||||||||||+|+| |++. +-
T Consensus 749 ~~l~i~~~rHP~l~~~~~~~~~----v~ndi~l~~~~~~~~~~~g~i~~ItGpNgsGKSTlLr~i-Gl~~---~~----- 815 (1022)
T 2o8b_B 749 PFLELKGSRHPCITKTFFGDDF----IPNDILIGCEEEEQENGKAYCVLVTGPNMGGKSTLMRQA-GLLA---VM----- 815 (1022)
T ss_dssp CCEEEEEECCCC------CCCC----CCEEEEESCCCSCC---CCCEEEEECCTTSSHHHHHHHH-HHHH---HH-----
T ss_pred ceEEEEeccccEEEEEecCCce----EeeeeeeccccccccCCCCcEEEEECCCCCChHHHHHHH-HHHH---HH-----
Confidence 4699999 99999 5545 99999999987 999999999999999999999 9986 31
Q ss_pred cCCCCCCCeEEEEecCCCCCCcccCCcccChHHHHHhcCCCCCccHHHHHHHHHHhhcCCCccCCCCCCcCCCcchhhhh
Q 021362 143 DSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDIL 222 (313)
Q Consensus 143 ~~g~~~~~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~LSgG~kqRv~ia~a 222 (313)
.+.++||||+.. .+++.+++.. ..|.. +. ......++|++|++ ++++++
T Consensus 816 ------aqiG~~Vpq~~~-----~l~v~d~I~~---rig~~-----d~-----------~~~~~stf~~em~~-~a~al~ 864 (1022)
T 2o8b_B 816 ------AQMGCYVPAEVC-----RLTPIDRVFT---RLGAS-----DR-----------IMSGESTFFVELSE-TASILM 864 (1022)
T ss_dssp ------HTTTCCEESSEE-----EECCCSBEEE---ECC-------------------------CHHHHHHHH-HHHHHH
T ss_pred ------hheeEEeccCcC-----CCCHHHHHHH---HcCCH-----HH-----------HhhchhhhHHHHHH-HHHHHH
Confidence 122348999742 3678887632 11211 00 01123466777664 899999
Q ss_pred hccCceEEEEcCCccccCh-----hhHHHHHhhccc----eEEEEcChHHHHH
Q 021362 223 VGLQHKVVIVDGNYLFLDG-----GVWKDVSSMFDE----KWFIEVDLDTAMQ 266 (313)
Q Consensus 223 l~~~ar~Li~d~~~lllDE-----~~~~~l~~l~~~----~i~vtHd~~~~~~ 266 (313)
++.++.++++|++.-.+|. .++..|+.+.+. ++|+|||++++..
T Consensus 865 la~~~sLlLLDEp~~Gtd~~dg~~~~~~il~~L~~~~g~~vl~~TH~~el~~~ 917 (1022)
T 2o8b_B 865 HATAHSLVLVDELGRGTATFDGTAIANAVVKELAETIKCRTLFSTHYHSLVED 917 (1022)
T ss_dssp HCCTTCEEEEECTTTTSCHHHHHHHHHHHHHHHHHTSCCEEEEECCCHHHHHH
T ss_pred hCCCCcEEEEECCCCCCChHHHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHH
Confidence 9999999999999999997 246666666533 4799999999876
|
| >1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A* | Back alignment and structure |
|---|
Probab=99.60 E-value=2.5e-17 Score=162.61 Aligned_cols=157 Identities=9% Similarity=0.020 Sum_probs=98.5
Q ss_pred EEEEccceEEcccccccccccccccc-ccCCCcEEEEECCCCCcHHHHHHH--HHHHhcccCCCCceeecCCCCCC----
Q 021362 77 VVEARCMDEVYDALAQRLLPTSALAS-NVNVKHIVGLAGPPGAGKSTLAAE--VVRRINKIWPQKASSFDSQVKPP---- 149 (313)
Q Consensus 77 ~l~~~~l~~~y~~~~~~~~~L~~vsl-~i~~Geiv~l~GpNGsGKSTLlk~--l~gl~~~~~p~~G~i~~~g~~~~---- 149 (313)
+++.+++.+.+++.. +|++++| .|++|++++|+||||||||||+++ ++|+++ |++|.|+++|.+..
T Consensus 12 ~~~~~~~~~~~~g~~----~Ld~i~~G~i~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~---~~~g~i~v~g~~~~~~~~ 84 (525)
T 1tf7_A 12 NSEHQAIAKMRTMIE----GFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIE---FDEPGVFVTFEETPQDII 84 (525)
T ss_dssp --CCSSCCEECCCCT----THHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHH---HCCCEEEEESSSCHHHHH
T ss_pred CccccccccccCCch----hHHHhcCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHh---CCCCEEEEEEeCCHHHHH
Confidence 577778877776666 9999999 999999999999999999999999 789998 89999999997631
Q ss_pred ---CeEEEEecCCCCCCc-ccCCcccChHHHHHhcCCCCCccHHHHHHHHHHhh--cCCCccCCCCCCcCCCcchhhhhh
Q 021362 150 ---DVATVLPMDGFHLYL-SQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLR--NQGSVYAPSFDHGVGDPVEDDILV 223 (313)
Q Consensus 150 ---~~i~~v~qd~~~~~~-~~ltv~e~~~~~~~~~~~~~~~~~~~~~~~l~~l~--~~~~~~~~~LSgG~kqRv~ia~al 223 (313)
+.++|++|+...... ..+++.+ ... . .++++.++ ...++.+.+||+||+||+.|+...
T Consensus 85 ~~~~~~g~~~q~~~~~~~l~~~~~~~-----------~~~-~----~~~l~~~~l~~~~~~~~~~LS~g~~~~lilDe~t 148 (525)
T 1tf7_A 85 KNARSFGWDLAKLVDEGKLFILDASP-----------DPE-G----QEVVGGFDLSALIERINYAIQKYRARRVSIDSVT 148 (525)
T ss_dssp HHHGGGTCCHHHHHHTTSEEEEECCC-----------CSS-C----CSCCSSHHHHHHHHHHHHHHHHHTCSEEEEECST
T ss_pred HHHHHcCCChHHhhccCcEEEEecCc-----------ccc-h----hhhhcccCHHHHHHHHHHHHHHcCCCEEEECCHH
Confidence 346778886321000 0011111 000 0 01111121 112334557899998876663333
Q ss_pred ccCceEEEEcCCccccCh----hhHHHHHhhccc---eEEEEcChHHH
Q 021362 224 GLQHKVVIVDGNYLFLDG----GVWKDVSSMFDE---KWFIEVDLDTA 264 (313)
Q Consensus 224 ~~~ar~Li~d~~~lllDE----~~~~~l~~l~~~---~i~vtHd~~~~ 264 (313)
+..+. +-+|. .+++.++.+.+. .+++||+++++
T Consensus 149 ~~~~~--------~~lD~~~~~~l~~ll~~l~~~g~tvl~itH~~~~~ 188 (525)
T 1tf7_A 149 SVFQQ--------YDASSVVRRELFRLVARLKQIGATTVMTTERIEEY 188 (525)
T ss_dssp TTSTT--------TCCHHHHHHHHHHHHHHHHHHTCEEEEEEECSSSS
T ss_pred HHHHh--------cCCHHHHHHHHHHHHHHHHHCCCEEEEEecCCCCc
Confidence 22111 23465 445555554332 47999999885
|
| >1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A* | Back alignment and structure |
|---|
Probab=99.60 E-value=2.8e-16 Score=138.27 Aligned_cols=160 Identities=16% Similarity=0.143 Sum_probs=98.1
Q ss_pred cccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCC--CCceeecCCCCCC----CeEEEEecCCCCCCcccCCc----cc
Q 021362 102 SNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWP--QKASSFDSQVKPP----DVATVLPMDGFHLYLSQLDA----ME 171 (313)
Q Consensus 102 l~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p--~~G~i~~~g~~~~----~~i~~v~qd~~~~~~~~ltv----~e 171 (313)
-..++|++++|+||||||||||+++|+|+++ | ..|+|.+.+.+.. +.++|+||+...+. .+++ .|
T Consensus 11 ~~~~~G~ii~l~GpsGsGKSTLlk~L~g~~~---p~~~~g~v~~ttr~~~~~e~~gi~y~fq~~~~f~--~~~~~~~f~E 85 (219)
T 1s96_A 11 HHMAQGTLYIVSAPSGAGKSSLIQALLKTQP---LYDTQVSVSHTTRQPRPGEVHGEHYFFVNHDEFK--EMISRDAFLE 85 (219)
T ss_dssp ----CCCEEEEECCTTSCHHHHHHHHHHHSC---TTTEEECCCEECSCCCTTCCBTTTBEECCHHHHH--HHHHTTCEEE
T ss_pred ccCCCCcEEEEECCCCCCHHHHHHHHhccCC---CCceEEEEEecCCCCCcccccCceEEECCHHHHH--HHHhcCHHHH
Confidence 4578999999999999999999999999997 6 6888888776532 24678888743322 2444 45
Q ss_pred ChHHHHHhcCCCCCccHHHHHHHHHHhhcCCCccCCCCCCcCCCcchhhhhhccCceEEEEcCCccccChhhHHHHHhhc
Q 021362 172 DPKEAHARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMF 251 (313)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~LSgG~kqRv~ia~al~~~ar~Li~d~~~lllDE~~~~~l~~l~ 251 (313)
++.+....+|. ..+.+.++++ ..+++++| +|......+.++.
T Consensus 86 ~~~~~~~~yg~----~~~~v~~~l~-----------------------------~G~illLD-----LD~~~~~~i~~~l 127 (219)
T 1s96_A 86 HAEVFGNYYGT----SREAIEQVLA-----------------------------TGVDVFLD-----IDWQGAQQIRQKM 127 (219)
T ss_dssp EEEETTEEEEE----EHHHHHHHHT-----------------------------TTCEEEEE-----CCHHHHHHHHHHC
T ss_pred HHHHHhccCCC----CHHHHHHHHh-----------------------------cCCeEEEE-----ECHHHHHHHHHHc
Confidence 44332212221 1222333322 14788888 8997777777776
Q ss_pred cc---eEEEEcChHHHHHHHhhcccccCCchHHHHHHHHhcCCchhHHhhhcccCccEEeecCC
Q 021362 252 DE---KWFIEVDLDTAMQRVLKRHISTGKPPDVAKWRIEYNDRPNAELIMKSKKNADLVIKSID 312 (313)
Q Consensus 252 ~~---~i~vtHd~~~~~~rv~griv~~G~~~ev~~~~~~~~~~~~~~~i~~~~~~ad~ii~~~~ 312 (313)
.+ +++++||++++..|+.+|- .++++++. .++.... .+ .+.....|.+|.|.+
T Consensus 128 ~~~~tI~i~th~~~~l~~Rl~~rG--~~~~e~i~-~rl~~a~---~e--~~~~~~~d~~i~Nd~ 183 (219)
T 1s96_A 128 PHARSIFILPPSKIELDRRLRGRG--QDSEEVIA-KRMAQAV---AE--MSHYAEYDYLIVNDD 183 (219)
T ss_dssp TTCEEEEEECSSHHHHHHHHHTTS--CSCHHHHH-HHHHHHH---HH--HTTGGGSSEEEECSS
T ss_pred cCCEEEEEECCCHHHHHHHHHHcC--CCCHHHHH-HHHHHHH---HH--HhhccCCCEEEECcC
Confidence 54 3588999999988765332 44555553 3333211 11 123345677777754
|
| >2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.59 E-value=5.4e-16 Score=139.99 Aligned_cols=128 Identities=13% Similarity=0.029 Sum_probs=86.9
Q ss_pred EEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCC-CceeecCCCCCCCeEEEE
Q 021362 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQ-KASSFDSQVKPPDVATVL 155 (313)
Q Consensus 77 ~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~-~G~i~~~g~~~~~~i~~v 155 (313)
++++++|++. . +|+++| +++|++++|+||||||||||+++|+|+++ |+ +|+|.++|.+. .|+
T Consensus 5 ~~~l~~l~~~----~----vl~~i~--i~~g~~v~i~Gp~GsGKSTll~~l~g~~~---~~~~G~I~~~g~~i----~~~ 67 (261)
T 2eyu_A 5 IPEFKKLGLP----D----KVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYIN---QTKSYHIITIEDPI----EYV 67 (261)
T ss_dssp -CCGGGSSCC----T----HHHHGG--GCSSEEEEEECSTTCSHHHHHHHHHHHHH---HHCCCEEEEEESSC----CSC
T ss_pred CCChHHCCCH----H----HHHHHh--hCCCCEEEEECCCCccHHHHHHHHHHhCC---CCCCCEEEEcCCcc----eee
Confidence 4667777643 3 899999 89999999999999999999999999998 87 99998877543 233
Q ss_pred ecCCCCCCcccCCcccChHHHHHhcCCCCCccHHHHHHHHHHhhcCCCccCCCCCCcCCCcchhhhhhccCceEEEEcCC
Q 021362 156 PMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGN 235 (313)
Q Consensus 156 ~qd~~~~~~~~ltv~e~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~LSgG~kqRv~ia~al~~~ar~Li~d~~ 235 (313)
+++...+ +.+ ..++... .. -|++|++++..+++++++|++
T Consensus 68 ~~~~~~~------v~q------------------------~~~gl~~----~~------l~~~la~aL~~~p~illlDEp 107 (261)
T 2eyu_A 68 FKHKKSI------VNQ------------------------REVGEDT----KS------FADALRAALREDPDVIFVGEM 107 (261)
T ss_dssp CCCSSSE------EEE------------------------EEBTTTB----SC------HHHHHHHHHHHCCSEEEESCC
T ss_pred cCCccee------eeH------------------------HHhCCCH----HH------HHHHHHHHHhhCCCEEEeCCC
Confidence 3321100 000 0111100 11 278999999999999999998
Q ss_pred ccccChhhHHHHHhhcc---ceEEEEcChHHH
Q 021362 236 YLFLDGGVWKDVSSMFD---EKWFIEVDLDTA 264 (313)
Q Consensus 236 ~lllDE~~~~~l~~l~~---~~i~vtHd~~~~ 264 (313)
. |++....+.+... .+++++|+.+..
T Consensus 108 ~---D~~~~~~~l~~~~~g~~vl~t~H~~~~~ 136 (261)
T 2eyu_A 108 R---DLETVETALRAAETGHLVFGTLHTNTAI 136 (261)
T ss_dssp C---SHHHHHHHHHHHHTTCEEEEEECCSSHH
T ss_pred C---CHHHHHHHHHHHccCCEEEEEeCcchHH
Confidence 8 8744333222222 246899998743
|
| >1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D* | Back alignment and structure |
|---|
Probab=99.54 E-value=3.3e-16 Score=144.41 Aligned_cols=136 Identities=13% Similarity=-0.025 Sum_probs=89.4
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCCC--------------CeEEEEecCCCCCCcccCCccc
Q 021362 106 VKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPP--------------DVATVLPMDGFHLYLSQLDAME 171 (313)
Q Consensus 106 ~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~~--------------~~i~~v~qd~~~~~~~~ltv~e 171 (313)
+|++++|+||||||||||+++|+|+++ |++|+|.+.|.+.. ..++|++|+....+ .+++++
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~---~~~g~V~l~g~D~~r~~a~~ql~~~~~~~~i~~v~q~~~~~p--~~~v~~ 175 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQ---NLGKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEGTDS--AALAYD 175 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHH---TTTCCEEEECCCCSSTTTTHHHHHHHHHHTCCEECCCTTCCH--HHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHH---hcCCEEEEEeecCCChhHHHHHHHHHHhcCceEEEeCCCCCH--HHHHHH
Confidence 799999999999999999999999999 99999999987742 13788999854322 467888
Q ss_pred ChHHHHHhcCCCCCccHHHHHHHHHHhhcC--CCccCCCCCCcCCCcchhhhhhccCceEEEEcCCccccCh----hhHH
Q 021362 172 DPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDG----GVWK 245 (313)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~~~~~LSgG~kqRv~ia~al~~~ar~Li~d~~~lllDE----~~~~ 245 (313)
++.++... +.. . .+++..+.. ....+.+|| +||++||++++..+..+++ .||. .+++
T Consensus 176 ~v~~~~~~-~~d----~----~llDt~G~~~~~~~~~~eLs---~~r~~iaRal~~~P~~~lL-----vLDa~t~~~~~~ 238 (304)
T 1rj9_A 176 AVQAMKAR-GYD----L----LFVDTAGRLHTKHNLMEELK---KVKRAIAKADPEEPKEVWL-----VLDAVTGQNGLE 238 (304)
T ss_dssp HHHHHHHH-TCS----E----EEECCCCCCTTCHHHHHHHH---HHHHHHHHHCTTCCSEEEE-----EEETTBCTHHHH
T ss_pred HHHHHHhC-CCC----E----EEecCCCCCCchHHHHHHHH---HHHHHHHHhhcCCCCeEEE-----EEcHHHHHHHHH
Confidence 87765321 110 0 011111211 111223444 7999998888888873332 4454 3455
Q ss_pred HHHhhcc----ceEEEEcChHH
Q 021362 246 DVSSMFD----EKWFIEVDLDT 263 (313)
Q Consensus 246 ~l~~l~~----~~i~vtHd~~~ 263 (313)
.+..+.+ .++++||+...
T Consensus 239 ~~~~~~~~~~~t~iivTh~d~~ 260 (304)
T 1rj9_A 239 QAKKFHEAVGLTGVIVTKLDGT 260 (304)
T ss_dssp HHHHHHHHHCCSEEEEECTTSS
T ss_pred HHHHHHHHcCCcEEEEECCccc
Confidence 5555432 35899998554
|
| >2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.54 E-value=2e-15 Score=144.83 Aligned_cols=159 Identities=12% Similarity=0.014 Sum_probs=92.7
Q ss_pred EEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCc--eeecCCCCC--CCeE
Q 021362 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA--SSFDSQVKP--PDVA 152 (313)
Q Consensus 77 ~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G--~i~~~g~~~--~~~i 152 (313)
+|+++||++.|++.. ++++++|+| +|+|+||||||||+++|+|+.. ++.| .+.+++... ...+
T Consensus 11 ~l~~~~l~~~y~~~~----vl~~vsf~I------~lvG~sGaGKSTLln~L~g~~~---~~~~~~~~~~~~~~t~~~~~i 77 (418)
T 2qag_C 11 YVGFANLPNQVYRKS----VKRGFEFTL------MVVGESGLGKSTLINSLFLTDL---YSPEYPGPSHRIKKTVQVEQS 77 (418)
T ss_dssp ----CCCCCCTTTTT----CC-CCCEEE------EEECCTTSSHHHHHHHHTTCCC---CCCCCCSCC-----CCEEEEE
T ss_pred cEEEEecceeECCEE----EecCCCEEE------EEECCCCCcHHHHHHHHhCCCC---CCCCCCCcccCCccceeeeeE
Confidence 699999999998876 999999998 9999999999999999999986 5544 222222111 1246
Q ss_pred EEEecCCCCCCcccCCcccChHHHHHhcCCCCCccHHHHHHHHHHhhcCCCccCCCCCCcCCCcchhhhhhccCce---E
Q 021362 153 TVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHK---V 229 (313)
Q Consensus 153 ~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~LSgG~kqRv~ia~al~~~ar---~ 229 (313)
++++|+..... .++++|++.+.....+ ......+.+.++. .++.+++||++|+++++.+++ +
T Consensus 78 ~~v~q~~~~~~--~Ltv~Dt~g~~~~~~~---~~~~~~i~~~i~~----------~~~~~l~qr~~IaRal~~d~~~~vl 142 (418)
T 2qag_C 78 KVLIKEGGVQL--LLTIVDTPGFGDAVDN---SNCWQPVIDYIDS----------KFEDYLNAESRVNRRQMPDNRVQCC 142 (418)
T ss_dssp ECC------CE--EEEEEECC--------------CHHHHHHHHH----------HHHHHTTTSCC-CCCCCCCC-CCEE
T ss_pred EEEEecCCccc--ceeeeechhhhhhccc---hhhHHHHHHHHHH----------HHHHHHHHHHHHHHHhccCCCeeEE
Confidence 77777644332 4899999877543211 1111222222221 445678899999999999999 8
Q ss_pred EEEcCCc-cccChhhHHHHHhhccc--eEEEEcChHH
Q 021362 230 VIVDGNY-LFLDGGVWKDVSSMFDE--KWFIEVDLDT 263 (313)
Q Consensus 230 Li~d~~~-lllDE~~~~~l~~l~~~--~i~vtHd~~~ 263 (313)
|+++++. -.+|+.-.+.++.+... .|+|.|-.+.
T Consensus 143 L~ldePt~~~L~~~d~~~lk~L~~~v~iIlVinK~Dl 179 (418)
T 2qag_C 143 LYFIAPSGHGLKPLDIEFMKRLHEKVNIIPLIAKADT 179 (418)
T ss_dssp EEECCC-CCSCCHHHHHHHHHHTTTSEEEEEEESTTS
T ss_pred EEEecCcccCCCHHHHHHHHHHhccCcEEEEEEcccC
Confidence 9999998 57887444555555443 3566665543
|
| >1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A* | Back alignment and structure |
|---|
Probab=99.54 E-value=8.7e-17 Score=154.30 Aligned_cols=142 Identities=12% Similarity=0.029 Sum_probs=93.4
Q ss_pred EEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCCCC------
Q 021362 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPD------ 150 (313)
Q Consensus 77 ~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~~~------ 150 (313)
.++++++.+.|+... +|+++ +. .+|++++|+||||||||||+++|+|+++ |++|+|.+.+.+...
T Consensus 143 ~~~l~~Lg~~~~~~~----~L~~l-~~-~~ggii~I~GpnGSGKTTlL~allg~l~---~~~g~I~~~ed~ie~~~~~~~ 213 (418)
T 1p9r_A 143 RLDLHSLGMTAHNHD----NFRRL-IK-RPHGIILVTGPTGSGKSTTLYAGLQELN---SSERNILTVEDPIEFDIDGIG 213 (418)
T ss_dssp CCCGGGSCCCHHHHH----HHHHH-HT-SSSEEEEEECSTTSCHHHHHHHHHHHHC---CTTSCEEEEESSCCSCCSSSE
T ss_pred CCCHHHcCCCHHHHH----HHHHH-HH-hcCCeEEEECCCCCCHHHHHHHHHhhcC---CCCCEEEEecccchhccCCcc
Confidence 467889998887766 88988 64 8999999999999999999999999998 999999887755311
Q ss_pred ------eEEEEe---------cCCCCCCccc----CCcccChHHHHHhcCC-----CCCccHHHHHHHHHHhhcCCCccC
Q 021362 151 ------VATVLP---------MDGFHLYLSQ----LDAMEDPKEAHARRGA-----PWTFNPLLLLNCLKNLRNQGSVYA 206 (313)
Q Consensus 151 ------~i~~v~---------qd~~~~~~~~----ltv~e~~~~~~~~~~~-----~~~~~~~~~~~~l~~l~~~~~~~~ 206 (313)
.+++.+ |++..+.... .|+.+++.+.. .|. ..+.+...+.+.|..++......+
T Consensus 214 q~~v~~~~g~~f~~~lr~~Lrq~pd~i~vgEiRd~et~~~~l~a~~--tGhlv~~tlh~~~~~~~i~rL~~lgl~~~~~~ 291 (418)
T 1p9r_A 214 QTQVNPRVDMTFARGLRAILRQDPDVVMVGEIRDLETAQIAVQASL--TGHLVMSTLHTNTAVGAVTRLRDMGIEPFLIS 291 (418)
T ss_dssp EEECBGGGTBCHHHHHHHHGGGCCSEEEESCCCSHHHHHHHHHHHH--TTCEEEEEECCSSSHHHHHHHHHHTCCHHHHH
T ss_pred eEEEccccCcCHHHHHHHHhccCCCeEEEcCcCCHHHHHHHHHHHH--hCCCcccccchhhHHHHHHHHHHcCCcHHHHH
Confidence 123333 5543221111 35555555442 221 012222334445666664433455
Q ss_pred CCCCCcCCCcchhhhhhccCceEEE
Q 021362 207 PSFDHGVGDPVEDDILVGLQHKVVI 231 (313)
Q Consensus 207 ~~LSgG~kqRv~ia~al~~~ar~Li 231 (313)
..|||||+|| |+++++.++++..
T Consensus 292 ~~LSgg~~QR--LaraL~~~p~~~~ 314 (418)
T 1p9r_A 292 SSLLGVLAQR--LVRTLCPDCKEPY 314 (418)
T ss_dssp HHEEEEEEEE--EEEEECTTTCEEE
T ss_pred HHHHHHHHHH--hhhhhcCCCCccC
Confidence 5999999999 8566665565544
|
| >3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B | Back alignment and structure |
|---|
Probab=99.53 E-value=8.5e-16 Score=154.17 Aligned_cols=153 Identities=8% Similarity=-0.021 Sum_probs=88.2
Q ss_pred EEEEccceEEcccccccccccccc----------ccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCC-CCceeecCC
Q 021362 77 VVEARCMDEVYDALAQRLLPTSAL----------ASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWP-QKASSFDSQ 145 (313)
Q Consensus 77 ~l~~~~l~~~y~~~~~~~~~L~~v----------sl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p-~~G~i~~~g 145 (313)
.++++||++.|+.... .+|+.+ +|+++. ++|+||||||||||+++|+|++. | ++|.|+++|
T Consensus 10 ~i~~~~l~~~~~~~~r--~ll~~id~l~~~gv~~~l~lp~---iaIvG~nGsGKSTLL~~I~Gl~~---P~~sG~vt~~g 81 (608)
T 3szr_A 10 SVAENNLCSQYEEKVR--PCIDLIDSLRALGVEQDLALPA---IAVIGDQSSGKSSVLEALSGVAL---PRGSGIVTRCP 81 (608)
T ss_dssp ----------CHHHHH--HHHHHHHHHHHHSCCSSCCCCC---EECCCCTTSCHHHHHHHHHSCC----------CCCSC
T ss_pred hhhhhhhhHHHHHHHH--HHHHHHHHHHhCCCCCcccCCe---EEEECCCCChHHHHHHHHhCCCC---CCCCCeEEEcC
Confidence 5889999999975321 133333 355554 99999999999999999999987 8 799999988
Q ss_pred CC-----------CCCeEEEEecCCCCCCcccCCcccChHHHHHhcCCCCCccHHHHHHHHHHhhcCCCccCCCCCCcCC
Q 021362 146 VK-----------PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVG 214 (313)
Q Consensus 146 ~~-----------~~~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~LSgG~k 214 (313)
.+ ....++|++|+...++ .+++.+|+.+.....+.. -.+..+
T Consensus 82 ~~i~~~~~~~~~~~~~~i~~v~Q~~~l~~--~~tv~e~i~~~~~~~~~~-------------------------~~~~s~ 134 (608)
T 3szr_A 82 LVLKLKKLVNEDKWRGKVSYQDYEIEISD--ASEVEKEINKAQNAIAGE-------------------------GMGISH 134 (608)
T ss_dssp EEEEEEECSSSSCCEEEESCC---CCCCC--HHHHHTTHHHHHHHHHCS-------------------------SSCCCS
T ss_pred EEEEEecCCccccceeEEeeecccccCCC--HHHHHHHHHHHHHHhcCC-------------------------ccccch
Confidence 65 1235888999854333 368888887653321100 012234
Q ss_pred CcchhhhhhccCceEEEEcCC------ccccCh----hhHHHHHhhccc-----eEEEEcChHHH
Q 021362 215 DPVEDDILVGLQHKVVIVDGN------YLFLDG----GVWKDVSSMFDE-----KWFIEVDLDTA 264 (313)
Q Consensus 215 qRv~ia~al~~~ar~Li~d~~------~lllDE----~~~~~l~~l~~~-----~i~vtHd~~~~ 264 (313)
+++.++.+....+.++++|+| +..+|+ .+++.+.++... .++++||++.+
T Consensus 135 ~~i~l~i~~~~~p~LlLlDePGi~~~~t~~LD~~~~~~i~~li~~~l~~~~~iil~vvt~~~d~a 199 (608)
T 3szr_A 135 ELITLEISSRDVPDLTLIDLPGITRVAVGNQPADIGYKIKTLIKKYIQRQETISLVVVPSNVDIA 199 (608)
T ss_dssp CCEEEEEEESSSCCEEEEECCC------CCSSCSHHHHHHHHHHHHTTSSSCCEEEEEESSSCTT
T ss_pred HHHHHHhcCCCCCceeEeeCCCccccccCCCCHHHHHHHHHHHHHHHhcCCCCceEEEeccchhc
Confidence 566666666667899999999 888888 455555564332 24899998844
|
| >1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A* | Back alignment and structure |
|---|
Probab=99.52 E-value=3.1e-15 Score=153.16 Aligned_cols=126 Identities=17% Similarity=0.118 Sum_probs=86.0
Q ss_pred ccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCCCCeEEEEecCCCCCCcccCCcccChH
Q 021362 95 LPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPK 174 (313)
Q Consensus 95 ~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~~~~i~~v~qd~~~~~~~~ltv~e~~~ 174 (313)
.+++|+||+ |++++|+||||||||||+|+|+|+... ++.|.+... ....+++++| .+. .+++.+|+.
T Consensus 567 ~vl~disl~---g~i~~I~GpNGsGKSTlLr~iagl~~~--~~~G~~vpa---~~~~i~~v~~---i~~--~~~~~d~l~ 633 (765)
T 1ewq_A 567 FVPNDLEMA---HELVLITGPNMAGKSTFLRQTALIALL--AQVGSFVPA---EEAHLPLFDG---IYT--RIGASDDLA 633 (765)
T ss_dssp CCCEEEEES---SCEEEEESCSSSSHHHHHHHHHHHHHH--HTTTCCBSS---SEEEECCCSE---EEE--ECCC-----
T ss_pred eEeeeccCC---CcEEEEECCCCCChHHHHHHHHhhhhh--cccCceeeh---hccceeeHHH---hhc--cCCHHHHHH
Confidence 389999999 999999999999999999999998631 577765321 1123444433 111 245555542
Q ss_pred HHHHhcCCCCCccHHHHHHHHHHhhcCCCccCCCCCCcCCCcchhhhhh--ccCceEEEEcCC---ccccChh-----hH
Q 021362 175 EAHARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILV--GLQHKVVIVDGN---YLFLDGG-----VW 244 (313)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~LSgG~kqRv~ia~al--~~~ar~Li~d~~---~lllDE~-----~~ 244 (313)
. .+|+||++++.++.++ +.++.++++|++ +..+|.. ++
T Consensus 634 ~--------------------------------g~S~~~~e~~~la~il~~a~~p~LlLLDEpgrGTs~lD~~~~~~~i~ 681 (765)
T 1ewq_A 634 G--------------------------------GKSTFMVEMEEVALILKEATENSLVLLDEVGRGTSSLDGVAIATAVA 681 (765)
T ss_dssp ---------------------------------CCSHHHHHHHHHHHHHHHCCTTEEEEEESTTTTSCHHHHHHHHHHHH
T ss_pred h--------------------------------cccHHHHHHHHHHHHHHhccCCCEEEEECCCCCCCCcCHHHHHHHHH
Confidence 2 2467888888888888 889999999999 8888862 33
Q ss_pred HHHHhhccceEEEEcChHHHH
Q 021362 245 KDVSSMFDEKWFIEVDLDTAM 265 (313)
Q Consensus 245 ~~l~~l~~~~i~vtHd~~~~~ 265 (313)
+.|.+....++++|||.+++.
T Consensus 682 ~~L~~~g~~vl~~TH~~~l~~ 702 (765)
T 1ewq_A 682 EALHERRAYTLFATHYFELTA 702 (765)
T ss_dssp HHHHHHTCEEEEECCCHHHHT
T ss_pred HHHHhCCCEEEEEeCCHHHHH
Confidence 444442223579999988763
|
| >1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A* | Back alignment and structure |
|---|
Probab=99.48 E-value=1.3e-14 Score=143.18 Aligned_cols=147 Identities=12% Similarity=0.046 Sum_probs=97.8
Q ss_pred EEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCCCCeEEEEe
Q 021362 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLP 156 (313)
Q Consensus 77 ~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~~~~i~~v~ 156 (313)
.+++++++..|++.. .+| +..+.+|++++|+||||||||||+++++|+.. |. |+ +.+.+.+
T Consensus 257 ~~~~~~l~~g~~~ld---~vL---~g~i~~G~i~~i~G~~GsGKSTLl~~l~g~~~---~~-G~---------~vi~~~~ 317 (525)
T 1tf7_A 257 RSSNVRVSSGVVRLD---EMC---GGGFFKDSIILATGATGTGKTLLVSRFVENAC---AN-KE---------RAILFAY 317 (525)
T ss_dssp CCCCCEECCSCHHHH---HHT---TSSEESSCEEEEEECTTSSHHHHHHHHHHHHH---TT-TC---------CEEEEES
T ss_pred ccccceeecChHHHH---HHh---CCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHH---hC-CC---------CEEEEEE
Confidence 356677766664311 033 44899999999999999999999999999997 64 43 1234555
Q ss_pred cCCCCCCcccCCcccChHHHHHhcCCCCCccHHHHHHHHHHhh--cCCCccCCCCCCcCCCcchhhhhhccCceEEEEcC
Q 021362 157 MDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLR--NQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDG 234 (313)
Q Consensus 157 qd~~~~~~~~ltv~e~~~~~~~~~~~~~~~~~~~~~~~l~~l~--~~~~~~~~~LSgG~kqRv~ia~al~~~ar~Li~d~ 234 (313)
|+.. ..+.++ ....+. +. .++ ...+ ...+.++.+||+||+||+++|+++..++++|++|
T Consensus 318 ee~~------~~l~~~----~~~~g~----~~---~~~-~~~g~~~~~~~~p~~LS~g~~q~~~~a~~l~~~p~llilD- 378 (525)
T 1tf7_A 318 EESR------AQLLRN----AYSWGM----DF---EEM-ERQNLLKIVCAYPESAGLEDHLQIIKSEINDFKPARIAID- 378 (525)
T ss_dssp SSCH------HHHHHH----HHTTSC----CH---HHH-HHTTSEEECCCCGGGSCHHHHHHHHHHHHHTTCCSEEEEE-
T ss_pred eCCH------HHHHHH----HHHcCC----CH---HHH-HhCCCEEEEEeccccCCHHHHHHHHHHHHHhhCCCEEEEc-
Confidence 5531 011111 112222 11 122 2233 2344566799999999999999999999999999
Q ss_pred CccccChh-----hHHHHHhhc----cc---eEEEEcCh
Q 021362 235 NYLFLDGG-----VWKDVSSMF----DE---KWFIEVDL 261 (313)
Q Consensus 235 ~~lllDE~-----~~~~l~~l~----~~---~i~vtHd~ 261 (313)
++..||.. ..+.+.++. +. +++++||.
T Consensus 379 p~~~Ld~~~~~~~~~~~i~~ll~~l~~~g~tvilvsh~~ 417 (525)
T 1tf7_A 379 SLSALARGVSNNAFRQFVIGVTGYAKQEEITGLFTNTSD 417 (525)
T ss_dssp CHHHHTSSSCHHHHHHHHHHHHHHHHHTTCEEEEEEECS
T ss_pred ChHHHHhhCChHHHHHHHHHHHHHHHhCCCEEEEEECcc
Confidence 99999986 544444332 22 46999998
|
| >1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A* | Back alignment and structure |
|---|
Probab=99.48 E-value=8.9e-16 Score=140.33 Aligned_cols=152 Identities=11% Similarity=-0.042 Sum_probs=87.6
Q ss_pred cccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCc-eeecCCCCCCC-----eEEEEecCCCCCCcccCCc
Q 021362 96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQVKPPD-----VATVLPMDGFHLYLSQLDA 169 (313)
Q Consensus 96 ~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G-~i~~~g~~~~~-----~i~~v~qd~~~~~~~~ltv 169 (313)
+|+++++.+++|++++|+||||||||||++.|+|++. |++| .|.+.+.+... ++..+.++. .+..
T Consensus 24 ~Ld~i~~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~---~~~G~~v~~~~~e~~~~~~~~r~~~~~~~~------~~~~ 94 (296)
T 1cr0_A 24 GINDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQWG---TAMGKKVGLAMLEESVEETAEDLIGLHNRV------RLRQ 94 (296)
T ss_dssp THHHHHCSBCTTCEEEEEESTTSSHHHHHHHHHHHHH---HTSCCCEEEEESSSCHHHHHHHHHHHHTTC------CGGG
T ss_pred HHHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHHHHH---HHcCCeEEEEeCcCCHHHHHHHHHHHHcCC------Chhh
Confidence 8999999999999999999999999999999999998 8877 55432221110 011111110 0111
Q ss_pred ccChHHHHHhcCCCCCccHHHHHHHHHHhhcCCCccCCCCCCcC-CCcchhhhhhccCceEEEEcCCcccc------Ch-
Q 021362 170 MEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGV-GDPVEDDILVGLQHKVVIVDGNYLFL------DG- 241 (313)
Q Consensus 170 ~e~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~LSgG~-kqRv~ia~al~~~ar~Li~d~~~lll------DE- 241 (313)
.+++.... .......+.+.++++.........+..+|.++ +|++. ++++..++++|++|++..++ |.
T Consensus 95 ~~~l~~~~----~~~~~~~~~~~~~l~~~~l~i~~~~~~~~~~~l~~~~~-a~~~~~~p~llilDept~~~~~~~~~d~~ 169 (296)
T 1cr0_A 95 SDSLKREI----IENGKFDQWFDELFGNDTFHLYDSFAEAETDRLLAKLA-YMRSGLGCDVIILDHISIVVSASGESDER 169 (296)
T ss_dssp CHHHHHHH----HHHTHHHHHHHHHHSSSCEEEECCCCSCCHHHHHHHHH-HHHHTTCCSEEEEEEEC-----------C
T ss_pred ccccccCC----CCHHHHHHHHHHHhccCCEEEECCCCCCCHHHHHHHHH-HHHHhcCCCEEEEcCccccCCCCCCCCHH
Confidence 12221110 00011111222232221211122224677777 66666 88899999999999999854 33
Q ss_pred ----hhHHHHHhhccc----eEEEEcCh
Q 021362 242 ----GVWKDVSSMFDE----KWFIEVDL 261 (313)
Q Consensus 242 ----~~~~~l~~l~~~----~i~vtHd~ 261 (313)
.+.+.|+++.++ +|+++|+.
T Consensus 170 ~~~~~i~~~L~~la~~~~~~vi~vsh~~ 197 (296)
T 1cr0_A 170 KMIDNLMTKLKGFAKSTGVVLVVICHLK 197 (296)
T ss_dssp HHHHHHHHHHHHHHHHHCCEEEEEEECC
T ss_pred HHHHHHHHHHHHHHHHhCCeEEEEEecC
Confidence 355556665432 46999996
|
| >2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11 | Back alignment and structure |
|---|
Probab=99.46 E-value=9.4e-15 Score=125.64 Aligned_cols=142 Identities=13% Similarity=0.029 Sum_probs=89.6
Q ss_pred CcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCC------CCCeEEEEecCCCCCCcccCCcccChHHHHHhc
Q 021362 107 KHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK------PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARR 180 (313)
Q Consensus 107 Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~------~~~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~ 180 (313)
|++++|+||||||||||+++|+|++ +++| |.++|.. ..+.++|++|+.. . . .+++. ..
T Consensus 1 G~~i~i~G~nG~GKTTll~~l~g~~----~~~G-i~~~g~~~~~~~~~~~~ig~~~~~~~--g--~---~~~l~----~~ 64 (189)
T 2i3b_A 1 ARHVFLTGPPGVGKTTLIHKASEVL----KSSG-VPVDGFYTEEVRQGGRRIGFDVVTLS--G--T---RGPLS----RV 64 (189)
T ss_dssp CCCEEEESCCSSCHHHHHHHHHHHH----HHTT-CCCEEEECCEEETTSSEEEEEEEETT--S--C---EEEEE----EC
T ss_pred CCEEEEECCCCChHHHHHHHHHhhc----ccCC-EEEcCEecchhHhhhceEEEEEEecc--c--c---eehhh----cc
Confidence 7899999999999999999999999 4678 8887743 2456889998741 1 1 12211 01
Q ss_pred CCCCCccHHHHHHHHHHhhcCCCccCCCCCCcCCCcch-hhh---hhccCceEEEEcC--CccccChhhHHHHHhhccc-
Q 021362 181 GAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVE-DDI---LVGLQHKVVIVDG--NYLFLDGGVWKDVSSMFDE- 253 (313)
Q Consensus 181 ~~~~~~~~~~~~~~l~~l~~~~~~~~~~LSgG~kqRv~-ia~---al~~~ar~Li~d~--~~lllDE~~~~~l~~l~~~- 253 (313)
....... .-......+...+|+||++++. +.+ |++.++++|++|+ ++-.+|+..++.|.++.+.
T Consensus 65 ~~~~~~~---------~~~~~v~~~~~~ls~~er~~~~~l~~~a~A~~~~~dvlilDE~g~~~~~~~~~~~~l~~~l~~~ 135 (189)
T 2i3b_A 65 GLEPPPG---------KRECRVGQYVVDLTSFEQLALPVLRNADCSSGPGQRVCVIDEIGKMELFSQLFIQAVRQTLSTP 135 (189)
T ss_dssp CCCCCSS---------SCCEESSSSEECHHHHHTTTTTTTCCCCCCCSSCCCCEEECCCSTTTTTCSHHHHHHHHHHHCS
T ss_pred cccCCcc---------ccccccceEEEcchHHHHHHHHHHhhhhHhhccCCCEEEEeCCCccccccHHHHHHHHHHHhCC
Confidence 1110000 0000112233468999998884 343 4677788888888 7777787888888888753
Q ss_pred -e-EE--EE--cCh--HHHHHHHh----hcccc
Q 021362 254 -K-WF--IE--VDL--DTAMQRVL----KRHIS 274 (313)
Q Consensus 254 -~-i~--vt--Hd~--~~~~~rv~----griv~ 274 (313)
. ++ ++ ||. .++. |+. |+++.
T Consensus 136 ~~~ilgti~vsh~~~~~~vd-~i~~~~~~~i~~ 167 (189)
T 2i3b_A 136 GTIILGTIPVPKGKPLALVE-EIRNRKDVKVFN 167 (189)
T ss_dssp SCCEEEECCCCCSSCCTTHH-HHHTTCCSEEEE
T ss_pred CcEEEEEeecCCCCchHHHH-HHeecCCcEEEE
Confidence 2 33 34 886 3333 443 56664
|
| >3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B* | Back alignment and structure |
|---|
Probab=99.43 E-value=5.6e-15 Score=153.56 Aligned_cols=130 Identities=12% Similarity=0.073 Sum_probs=84.0
Q ss_pred ccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCCCCeEEEEecCCCCCCcccCCcccChH
Q 021362 95 LPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPK 174 (313)
Q Consensus 95 ~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~~~~i~~v~qd~~~~~~~~ltv~e~~~ 174 (313)
.+++|++|++++|++++|+||||||||||+|+|+++.-- +..|. +++..... +.+.+.+
T Consensus 661 ~V~ndvsl~~~~g~i~~ItGPNGaGKSTlLr~i~~i~~~--aq~g~-------------~vpa~~~~-----i~~~d~i- 719 (918)
T 3thx_B 661 YVPNNTDLSEDSERVMIITGPNMGGKSSYIKQVALITIM--AQIGS-------------YVPAEEAT-----IGIVDGI- 719 (918)
T ss_dssp SCCEEEEECTTSCCEEEEESCCCHHHHHHHHHHHHHHHH--HHHTC-------------CBSSSEEE-----EECCSEE-
T ss_pred eecccccccCCCCeEEEEECCCCCchHHHHHHHHHHHHH--hhcCc-------------cccchhhh-----hhHHHHH-
Confidence 389999999999999999999999999999999887530 11111 11111000 0000100
Q ss_pred HHHHhcCCCCCccHHHHHHHHHHhh--cCCCccCCCCCCcCCCcchhhhhhccCceEEEEcCCccccCh----hhH-HHH
Q 021362 175 EAHARRGAPWTFNPLLLLNCLKNLR--NQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDG----GVW-KDV 247 (313)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~l~~l~--~~~~~~~~~LSgG~kqRv~ia~al~~~ar~Li~d~~~lllDE----~~~-~~l 247 (313)
+..++ .........||+||+|++.++++ +.++.++++|++...+|. .+. ..+
T Consensus 720 --------------------~~~ig~~d~l~~~~stfs~em~~~~~il~~-a~~p~LlLLDEP~~GlD~~~~~~i~~~il 778 (918)
T 3thx_B 720 --------------------FTRMGAADNIYKGRSTFMEELTDTAEIIRK-ATSQSLVILDELGRGTSTHDGIAIAYATL 778 (918)
T ss_dssp --------------------EEEC----------CCHHHHHHHHHHHHHH-CCTTCEEEEESTTTTSCHHHHHHHHHHHH
T ss_pred --------------------HHhCChHHHHHHhHHHhhHHHHHHHHHHHh-ccCCCEEEEeCCCCCCCHHHHHHHHHHHH
Confidence 00111 11122345889999999999877 788999999999999998 232 444
Q ss_pred Hhhcc----ceEEEEcChHHHHH
Q 021362 248 SSMFD----EKWFIEVDLDTAMQ 266 (313)
Q Consensus 248 ~~l~~----~~i~vtHd~~~~~~ 266 (313)
..+.+ .++|+|||++.+..
T Consensus 779 ~~L~~~~g~tvl~vTH~~el~~l 801 (918)
T 3thx_B 779 EYFIRDVKSLTLFVTHYPPVCEL 801 (918)
T ss_dssp HHHHHTTCCEEEEECSCGGGGGH
T ss_pred HHHHHhcCCeEEEEeCcHHHHHH
Confidence 44432 24799999987754
|
| >2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V | Back alignment and structure |
|---|
Probab=99.42 E-value=5.6e-15 Score=138.70 Aligned_cols=117 Identities=13% Similarity=-0.019 Sum_probs=74.2
Q ss_pred cccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecC-CCC----CCCeEEEEecCCCCCCcccCCcc
Q 021362 96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDS-QVK----PPDVATVLPMDGFHLYLSQLDAM 170 (313)
Q Consensus 96 ~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~-g~~----~~~~i~~v~qd~~~~~~~~ltv~ 170 (313)
-++++++.+ +|++++|+||||||||||+|+|+|+... |+.|+|.+. |.. ....+++++|+.+.+. ..++.
T Consensus 205 gl~~L~~~~-~G~~~~lvG~sG~GKSTLln~L~g~~~~--~~~G~I~~~~G~g~~tt~~~~i~~v~q~~~l~d--tpgv~ 279 (358)
T 2rcn_A 205 GLKPLEEAL-TGRISIFAGQSGVGKSSLLNALLGLQNE--ILTNDVSNVSGLGQHTTTAARLYHFPHGGDVID--SPGVR 279 (358)
T ss_dssp THHHHHHHH-TTSEEEEECCTTSSHHHHHHHHHCCSSC--CCCC-------------CCCEEEECTTSCEEEE--CHHHH
T ss_pred CHHHHHHhc-CCCEEEEECCCCccHHHHHHHHhccccc--cccCCccccCCCCccceEEEEEEEECCCCEecC--cccHH
Confidence 356666654 7999999999999999999999998742 688999876 532 3456888888864332 34566
Q ss_pred cChHHHHHhcCCCCCccHHHHHHHHHHhhc--CCCccCCCCCCcCCCcchhhhhh
Q 021362 171 EDPKEAHARRGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDILV 223 (313)
Q Consensus 171 e~~~~~~~~~~~~~~~~~~~~~~~l~~l~~--~~~~~~~~LSgG~kqRv~ia~al 223 (313)
++. ..+.+.......+.++++.++. ..+....+|| ||+||+++|.++
T Consensus 280 e~~-----l~~l~~~e~~~~~~e~l~~~gl~~f~~~~~~~lS-G~~~r~ala~gl 328 (358)
T 2rcn_A 280 EFG-----LWHLEPEQITQGFVEFHDYLGHCKYRDCKHDADP-GCAIREAVENGA 328 (358)
T ss_dssp TCC-----CCCCCHHHHHHTSGGGGGGTTCSSSTTCCSSSCT-TCHHHHHHHHTS
T ss_pred Hhh-----hcCCCHHHHHHHHHHHHHHcCCchhcCCCcccCC-HHHHHHHHHhcC
Confidence 642 1122211222334566666663 3566777999 999999996543
|
| >1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.41 E-value=4.1e-14 Score=121.85 Aligned_cols=157 Identities=11% Similarity=0.007 Sum_probs=78.5
Q ss_pred cEEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHh-----cccCCCCceeecCCCC-CC
Q 021362 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRI-----NKIWPQKASSFDSQVK-PP 149 (313)
Q Consensus 76 ~~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~-----~~~~p~~G~i~~~g~~-~~ 149 (313)
.+|+++|+++.|+. . ++++ |.+.+|+.++|+|+||||||||++.|+|.. . |+.|.+.+.+.- ..
T Consensus 2 ~~l~~~~~~~~~~~-~----~l~~--~~~~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~---~~~G~~~~~~~~~~~ 71 (210)
T 1pui_A 2 TNLNYQQTHFVMSA-P----DIRH--LPSDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTS---KTPGRTQLINLFEVA 71 (210)
T ss_dssp ---------CEEEE-S----SGGG--SSCSCSEEEEEEECTTSSHHHHHTTTCCC----------------CCEEEEEEE
T ss_pred cchhhhhhhheeec-C----CHhH--CCCCCCcEEEEECCCCCCHHHHHHHHhCCCcccccc---CCCccceeeEEEEec
Confidence 36899999999973 4 7887 999999999999999999999999999987 6 888876542210 00
Q ss_pred CeEEEEecCCCCCCcccCCccc----ChHHHHHh-cC-----------CCCCccHHHHHHHHHHhhcC---CCccCCCCC
Q 021362 150 DVATVLPMDGFHLYLSQLDAME----DPKEAHAR-RG-----------APWTFNPLLLLNCLKNLRNQ---GSVYAPSFD 210 (313)
Q Consensus 150 ~~i~~v~qd~~~~~~~~ltv~e----~~~~~~~~-~~-----------~~~~~~~~~~~~~l~~l~~~---~~~~~~~LS 210 (313)
....++...++..........+ .+...... .. .+.......+.++++..+.. ...+...+|
T Consensus 72 ~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~v~nK~D~~s 151 (210)
T 1pui_A 72 DGKRLVDLPGYGYAEVPEEMKRKWQRALGEYLEKRQSLQGLVVLMDIRHPLKDLDQQMIEWAVDSNIAVLVLLTKADKLA 151 (210)
T ss_dssp TTEEEEECCCCC------CCHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHTTCCEEEEEECGGGSC
T ss_pred CCEEEEECcCCcccccCHHHHHHHHHHHHHHHHhhhcccEEEEEEECCCCCchhHHHHHHHHHHcCCCeEEEEecccCCC
Confidence 0111111111100000000000 01111110 00 11112222344455444421 133556899
Q ss_pred CcCCCc-chhhhhhccCceEEEEcCCccccChh
Q 021362 211 HGVGDP-VEDDILVGLQHKVVIVDGNYLFLDGG 242 (313)
Q Consensus 211 gG~kqR-v~ia~al~~~ar~Li~d~~~lllDE~ 242 (313)
+||+|| +..+++++..+..++.+.++..+|..
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Sal~~~ 184 (210)
T 1pui_A 152 SGARKAQLNMVREAVLAFNGDVQVETFSSLKKQ 184 (210)
T ss_dssp HHHHHHHHHHHHHHHGGGCSCEEEEECBTTTTB
T ss_pred chhHHHHHHHHHHHHHhcCCCCceEEEeecCCC
Confidence 999999 78888877777667778888888873
|
| >2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.40 E-value=4.4e-14 Score=132.95 Aligned_cols=77 Identities=14% Similarity=-0.028 Sum_probs=58.4
Q ss_pred ccCC-CCCCcCCCcchhhhhhc---------cCceEEEEcCCccccCh----hhHHHHHhhccceEEEEcChHHHHHHHh
Q 021362 204 VYAP-SFDHGVGDPVEDDILVG---------LQHKVVIVDGNYLFLDG----GVWKDVSSMFDEKWFIEVDLDTAMQRVL 269 (313)
Q Consensus 204 ~~~~-~LSgG~kqRv~ia~al~---------~~ar~Li~d~~~lllDE----~~~~~l~~l~~~~i~vtHd~~~~~~rv~ 269 (313)
.++. .||+||+||++||++++ .++++|++|+++.-||+ .+++.|.++....|++||+ +....+++
T Consensus 260 ~~~~~~lS~Gqqq~l~lA~~La~~~l~~~~~~~p~iLLLDEp~s~LD~~~~~~l~~~l~~~~qt~i~~th~-~~~~~~i~ 338 (359)
T 2o5v_A 260 FPASDYASRGEGRTVALALRRAELELLREKFGEDPVLLLDDFTAELDPHRRQYLLDLAASVPQAIVTGTEL-APGAALTL 338 (359)
T ss_dssp EEHHHHCCHHHHHHHHHHHHHHHHHHHHHHHSSCCEEEECCGGGCCCHHHHHHHHHHHHHSSEEEEEESSC-CTTCSEEE
T ss_pred cchhhhCCHHHHHHHHHHHHHHHhhhhhhccCCCCEEEEeCccccCCHHHHHHHHHHHHhcCcEEEEEEec-cccCCEEE
Confidence 3555 79999999999999999 89999999999999999 4555555554224577784 43111444
Q ss_pred ----hcccccCCchHH
Q 021362 270 ----KRHISTGKPPDV 281 (313)
Q Consensus 270 ----griv~~G~~~ev 281 (313)
|+++..|+++++
T Consensus 339 ~l~~G~i~~~g~~~~~ 354 (359)
T 2o5v_A 339 RAQAGRFTPVADEEMQ 354 (359)
T ss_dssp EEETTEEEECCCTTTS
T ss_pred EEECCEEEecCCHHHH
Confidence 899888988775
|
| >4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A* | Back alignment and structure |
|---|
Probab=99.40 E-value=3.2e-15 Score=130.62 Aligned_cols=30 Identities=23% Similarity=0.408 Sum_probs=28.6
Q ss_pred ccCCCcEEEEECCCCCcHHHHHHHHHHHhc
Q 021362 103 NVNVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 103 ~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~ 132 (313)
.|++|++++|+||||||||||+++|+|+..
T Consensus 21 gi~~G~~~~l~G~nGsGKSTll~~l~g~~~ 50 (231)
T 4a74_A 21 GIETQAITEVFGEFGSGKTQLAHTLAVMVQ 50 (231)
T ss_dssp SEESSEEEEEEESTTSSHHHHHHHHHHHTT
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHHh
Confidence 689999999999999999999999999876
|
| >2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis} | Back alignment and structure |
|---|
Probab=99.38 E-value=1.1e-13 Score=130.32 Aligned_cols=63 Identities=21% Similarity=0.242 Sum_probs=53.7
Q ss_pred EEccceEE---ccccccccccc---------cccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCC
Q 021362 79 EARCMDEV---YDALAQRLLPT---------SALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQV 146 (313)
Q Consensus 79 ~~~~l~~~---y~~~~~~~~~L---------~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~ 146 (313)
+++++++. |+.... .+| +++||.+++|++++|+||||||||||+++|+|+++ |++|.|.++|.
T Consensus 137 ~f~~v~f~~~~Y~~~~~--~vL~~~~~~~~~~~l~~~i~~G~~i~ivG~sGsGKSTll~~l~~~~~---~~~g~I~ie~~ 211 (361)
T 2gza_A 137 FFKHVRPMSKSLTPFEQ--ELLALKEAGDYMSFLRRAVQLERVIVVAGETGSGKTTLMKALMQEIP---FDQRLITIEDV 211 (361)
T ss_dssp TTSCCCCSCSCCCHHHH--HHHHHHHHTCHHHHHHHHHHTTCCEEEEESSSSCHHHHHHHHHTTSC---TTSCEEEEESS
T ss_pred CcCccccccccccchhH--HHHhhhhhHHHHHHHHHHHhcCCEEEEECCCCCCHHHHHHHHHhcCC---CCceEEEECCc
Confidence 56788877 753111 144 99999999999999999999999999999999999 99999999874
|
| >2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.38 E-value=1.4e-13 Score=126.57 Aligned_cols=114 Identities=11% Similarity=-0.036 Sum_probs=77.1
Q ss_pred cccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeec---CCCCCC--------CeEEEEecCCCCC--Cc-ccC
Q 021362 102 SNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFD---SQVKPP--------DVATVLPMDGFHL--YL-SQL 167 (313)
Q Consensus 102 l~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~---~g~~~~--------~~i~~v~qd~~~~--~~-~~l 167 (313)
+++..|++++|+||||||||||+|+|+ ++. |++|+|.+ +|++.. ..++|++|++... .. +.+
T Consensus 160 ~~~l~G~i~~l~G~sG~GKSTLln~l~-~~~---~~~G~i~~~~~~G~~~t~~~~~~~~~~~g~v~d~pg~~~~~l~~~l 235 (302)
T 2yv5_A 160 VDYLEGFICILAGPSGVGKSSILSRLT-GEE---LRTQEVSEKTERGRHTTTGVRLIPFGKGSFVGDTPGFSKVEATMFV 235 (302)
T ss_dssp HHHTTTCEEEEECSTTSSHHHHHHHHH-SCC---CCCSCC---------CCCCEEEEEETTTEEEESSCCCSSCCGGGTS
T ss_pred HhhccCcEEEEECCCCCCHHHHHHHHH-Hhh---CcccccccccCCCCCceeeEEEEEcCCCcEEEECcCcCcCcccccC
Confidence 456789999999999999999999999 988 99999999 786532 1378999986432 11 347
Q ss_pred CcccCh--HHH----H--HhcC-CCCCccHHHHHHHHHHhhcC---CCccCCCCCCcCCCcchhh
Q 021362 168 DAMEDP--KEA----H--ARRG-APWTFNPLLLLNCLKNLRNQ---GSVYAPSFDHGVGDPVEDD 220 (313)
Q Consensus 168 tv~e~~--~~~----~--~~~~-~~~~~~~~~~~~~l~~l~~~---~~~~~~~LSgG~kqRv~ia 220 (313)
|+ +|+ .++ + ...+ .+..+...++.++++.++.. .+.++..|||..+++++||
T Consensus 236 t~-e~l~~~f~~~~~~~c~~~~~~~~~e~~~~v~~~l~~~~L~~~~~~~~~~~ls~~~~R~~~~~ 299 (302)
T 2yv5_A 236 KP-REVRNYFREFLRYQCKYPDCTHTNEPGCAVKEAVKNGEISCERYKSYLKIIKVYLEEIKELC 299 (302)
T ss_dssp CG-GGGGGGCGGGHHHHHHSTTCCSSSCTTCHHHHHHHTTSSCHHHHHHHHHHTTCCCTTHHHHS
T ss_pred CH-HHHHHHHHHHHHccCCCCCCCCCCCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHh
Confidence 88 777 333 1 1223 23334456788899988854 2446668998777778873
|
| >1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6 | Back alignment and structure |
|---|
Probab=99.37 E-value=2e-13 Score=117.88 Aligned_cols=177 Identities=15% Similarity=0.208 Sum_probs=91.0
Q ss_pred ccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCCCCeEEEEecCCCCCCcccC--CcccChHHHHHhc
Q 021362 103 NVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQL--DAMEDPKEAHARR 180 (313)
Q Consensus 103 ~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~~~~i~~v~qd~~~~~~~~l--tv~e~~~~~~~~~ 180 (313)
...+|++++|+|+||||||||+++|+++++ +..|.+.+ +.+|.+....... ...++ +....
T Consensus 18 ~~~~~~~i~i~G~~GsGKstl~~~l~~~~~---~~~~~v~~-----------~~~d~~~~~~~~~~~~~~~~---~~~~~ 80 (201)
T 1rz3_A 18 KTAGRLVLGIDGLSRSGKTTLANQLSQTLR---EQGISVCV-----------FHMDDHIVERAKRYHTGNEE---WFEYY 80 (201)
T ss_dssp CCSSSEEEEEEECTTSSHHHHHHHHHHHHH---HTTCCEEE-----------EEGGGGCCCHHHHSSSSSCH---HHHHH
T ss_pred ccCCCeEEEEECCCCCCHHHHHHHHHHHHh---hcCCeEEE-----------eccCcccCCHHHHHhcCCCC---ccCCC
Confidence 467899999999999999999999999997 66665543 3344332211000 00000 10000
Q ss_pred CCCCCccHHHHHHH-HHHhhcCCCccCCCCCCcCCCcchhhhhhccCceEEEEcCCccccChhhHHHHHhhccceEEEEc
Q 021362 181 GAPWTFNPLLLLNC-LKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEKWFIEV 259 (313)
Q Consensus 181 ~~~~~~~~~~~~~~-l~~l~~~~~~~~~~LSgG~kqRv~ia~al~~~ar~Li~d~~~lllDE~~~~~l~~l~~~~i~vtH 259 (313)
+...+.+.+.+. +..+........+.+..-...+.. +........++++|+++++-. .+.++++..|+|+-
T Consensus 81 --~~~~d~~~l~~~v~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~vIveg~~l~~~-----~~~~~~d~~i~v~~ 152 (201)
T 1rz3_A 81 --YLQWDVEWLTHQLFRQLKASHQLTLPFYDHETDTHSK-RTVYLSDSDMIMIEGVFLQRK-----EWRPFFDFVVYLDC 152 (201)
T ss_dssp --HTSSCHHHHHHHTGGGTTTCSEEEEEEEETTTTEEEE-EEEECTTCSEEEEEETTTTST-----TTGGGCSEEEEECC
T ss_pred --ccccCHHHHHHHHHHHHhcCCccccCceeccCCCCCC-ceEEeCCCcEEEEechhhccH-----HHHhhcCEEEEEeC
Confidence 123344444332 233322222333334433221111 112223467899999987643 24566778899999
Q ss_pred ChHHHHHHHhhcccccCCchHHHHHHHHhcCCchhH-Hhhhc--ccCccEEeecC
Q 021362 260 DLDTAMQRVLKRHISTGKPPDVAKWRIEYNDRPNAE-LIMKS--KKNADLVIKSI 311 (313)
Q Consensus 260 d~~~~~~rv~griv~~G~~~ev~~~~~~~~~~~~~~-~i~~~--~~~ad~ii~~~ 311 (313)
+.+....|++.|. ++ +..++...+.|..+ |+.+. +..||+||+|.
T Consensus 153 ~~~~~~~R~~~R~------~~-~~~~~~~~~~~~~~~y~~~~~~~~~AD~vI~N~ 200 (201)
T 1rz3_A 153 PREIRFARENDQV------KQ-NIQKFINRYWKAEDYYLETEEPIKRADVVFDMT 200 (201)
T ss_dssp C---------------------CHHHHHHHHHHHHHHHHHHHCHHHHCSEEEC--
T ss_pred CHHHHHHHHhcCC------HH-HHHHHHhheeHHHHHHhCCCCcHhhCcEEecCC
Confidence 9988887877664 22 33445445566666 65554 78999999874
|
| >3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A* | Back alignment and structure |
|---|
Probab=99.37 E-value=9.2e-13 Score=123.84 Aligned_cols=117 Identities=12% Similarity=0.047 Sum_probs=75.6
Q ss_pred ccccccc-------ccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCC-CceeecCCCCC----CCeEEEEecCCCCCC
Q 021362 96 PTSALAS-------NVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQ-KASSFDSQVKP----PDVATVLPMDGFHLY 163 (313)
Q Consensus 96 ~L~~vsl-------~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~-~G~i~~~g~~~----~~~i~~v~qd~~~~~ 163 (313)
.|+++.+ .+.+|++++|+||||||||||+++|+|+++ |+ .|.|...+.+. ....+++.|...
T Consensus 105 ~l~~lg~~~~l~~l~~~~~g~i~I~GptGSGKTTlL~~l~g~~~---~~~~~~i~t~ed~~e~~~~~~~~~v~q~~~--- 178 (356)
T 3jvv_A 105 TMEELGMGEVFKRVSDVPRGLVLVTGPTGSGKSTTLAAMLDYLN---NTKYHHILTIEDPIEFVHESKKCLVNQREV--- 178 (356)
T ss_dssp CTTTTTCCHHHHHHHHCSSEEEEEECSTTSCHHHHHHHHHHHHH---HHCCCEEEEEESSCCSCCCCSSSEEEEEEB---
T ss_pred CHHHcCChHHHHHHHhCCCCEEEEECCCCCCHHHHHHHHHhccc---CCCCcEEEEccCcHHhhhhccccceeeeee---
Confidence 5666665 778899999999999999999999999998 76 45543221111 000111111100
Q ss_pred cccCCcccChHHHHHhcCCCCCccHHHHHHHHHHhhcCCCccCCCCCCcCCCcchhhhhhccCceEEEEcCCccccChhh
Q 021362 164 LSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGV 243 (313)
Q Consensus 164 ~~~ltv~e~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~LSgG~kqRv~ia~al~~~ar~Li~d~~~lllDE~~ 243 (313)
+. . .++.. -+|++++..++++|++|++. |++.
T Consensus 179 -----------------~~-~-----------------------~~~~~----~~La~aL~~~PdvillDEp~---d~e~ 210 (356)
T 3jvv_A 179 -----------------HR-D-----------------------TLGFS----EALRSALREDPDIILVGEMR---DLET 210 (356)
T ss_dssp -----------------TT-T-----------------------BSCHH----HHHHHHTTSCCSEEEESCCC---SHHH
T ss_pred -----------------cc-c-----------------------cCCHH----HHHHHHhhhCcCEEecCCCC---CHHH
Confidence 00 0 00000 08888888888888888887 7777
Q ss_pred HHHHHhhccc---eEEEEcChHHHHH
Q 021362 244 WKDVSSMFDE---KWFIEVDLDTAMQ 266 (313)
Q Consensus 244 ~~~l~~l~~~---~i~vtHd~~~~~~ 266 (313)
++.+.+.... +++++|+.+.+..
T Consensus 211 ~~~~~~~~~~G~~vl~t~H~~~~~~~ 236 (356)
T 3jvv_A 211 IRLALTAAETGHLVFGTLHTTSAAKT 236 (356)
T ss_dssp HHHHHHHHHTTCEEEEEESCSSHHHH
T ss_pred HHHHHHHHhcCCEEEEEEccChHHHH
Confidence 7776666543 4699999998743
|
| >3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B | Back alignment and structure |
|---|
Probab=99.36 E-value=1.6e-12 Score=121.37 Aligned_cols=60 Identities=10% Similarity=0.087 Sum_probs=48.2
Q ss_pred ccCCCCCCcCCC------cchhhhhhccCceEEEEcCCccccCh----hhHHHHHhhccc---eEEEEcChHH
Q 021362 204 VYAPSFDHGVGD------PVEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFDE---KWFIEVDLDT 263 (313)
Q Consensus 204 ~~~~~LSgG~kq------Rv~ia~al~~~ar~Li~d~~~lllDE----~~~~~l~~l~~~---~i~vtHd~~~ 263 (313)
+++.+||||||| |+++|++++.++++|++|+|+..||+ .+++.|.++... .+++|||.+.
T Consensus 244 ~~~~~lS~G~~~~~~la~~l~~a~~l~~~p~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~vi~~sH~~~~ 316 (339)
T 3qkt_A 244 RPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDEEL 316 (339)
T ss_dssp ECGGGSCHHHHHHHHHHHHHHHHHHTTTTTCEEEEECCCTTCCHHHHHHHHHHHHHTGGGSSEEEEEESCGGG
T ss_pred CChHHCCHHHHHHHHHHHHHHHHHHhcCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEEChHHH
Confidence 456699999999 56778888889999999999999999 456666665543 5799999664
|
| >4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.36 E-value=4.5e-13 Score=131.97 Aligned_cols=62 Identities=16% Similarity=0.055 Sum_probs=51.1
Q ss_pred cCCCC-CCcCCCcchhhhhhccCc--eEEEEcCCccccCh----hhHHHHHhhcc--ceEEEEcChHHHHH
Q 021362 205 YAPSF-DHGVGDPVEDDILVGLQH--KVVIVDGNYLFLDG----GVWKDVSSMFD--EKWFIEVDLDTAMQ 266 (313)
Q Consensus 205 ~~~~L-SgG~kqRv~ia~al~~~a--r~Li~d~~~lllDE----~~~~~l~~l~~--~~i~vtHd~~~~~~ 266 (313)
++.+| ||||+|||+||++++.++ ++|++|+|+..||. .+.+.|+++.+ .+|+||||++++..
T Consensus 393 ~~~~l~SgG~~qrv~la~~l~~~~~~~~lilDEp~~gld~~~~~~i~~~l~~~~~~~~vi~itH~~~~~~~ 463 (517)
T 4ad8_A 393 PLSDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLADTRQVLVVTHLAQIAAR 463 (517)
T ss_dssp BSSSSSCSSHHHHHHHHHHHHHCCCSSEEEECSCSSSCCTHHHHHHHHHHHHHHHHSEEEEECCCHHHHHH
T ss_pred cHHhcCCHHHHHHHHHHHHHHhCCCCCEEEEeCCcCCCCHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHh
Confidence 34467 999999999999999999 99999999999998 45555555543 35799999998865
|
| >2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=99.35 E-value=5.7e-14 Score=118.86 Aligned_cols=100 Identities=11% Similarity=-0.025 Sum_probs=61.4
Q ss_pred cEEEEECCCCCcHHHHHHHHHHHhcccCCC---CceeecCCCCCC------------CeEE----EEecCCCCCCcccCC
Q 021362 108 HIVGLAGPPGAGKSTLAAEVVRRINKIWPQ---KASSFDSQVKPP------------DVAT----VLPMDGFHLYLSQLD 168 (313)
Q Consensus 108 eiv~l~GpNGsGKSTLlk~l~gl~~~~~p~---~G~i~~~g~~~~------------~~i~----~v~qd~~~~~~~~lt 168 (313)
++++|+|+||||||||+++|+|++. |+ .|.|.++|.+.. +.++ +++|+.+.+.
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~---~~g~~~G~I~~dg~~i~~~~~~~~d~~r~~~ig~~~~~~~~~~~~~i----- 74 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILR---ERGLRVAVVKRHAHGDFEIDKEGKDSWKIYNSGADVVIASPVKLAFI----- 74 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHH---HTTCCEEEEEC------------CHHHHHHHHTCEEEEECSSEEEEE-----
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhh---hcCCceEEEEEcCcccccCCccchhHHHHHhcCCceEEECCCcEEEE-----
Confidence 5899999999999999999999999 88 899999986521 1233 5555533221
Q ss_pred cccChHHHHHhcCCCCCccHHHHHHHHHH-hhcCCCccCC-CCCCcCCCcchhhhhhccCce
Q 021362 169 AMEDPKEAHARRGAPWTFNPLLLLNCLKN-LRNQGSVYAP-SFDHGVGDPVEDDILVGLQHK 228 (313)
Q Consensus 169 v~e~~~~~~~~~~~~~~~~~~~~~~~l~~-l~~~~~~~~~-~LSgG~kqRv~ia~al~~~ar 228 (313)
.+ ........+.++++. +. ..+..+. .|||||+||++||+++..++.
T Consensus 75 -~~-----------~~~~~~a~l~~~i~~~l~-g~dt~i~EglSgGq~qri~lARall~~p~ 123 (171)
T 2f1r_A 75 -RR-----------VSEEEGNDLDWIYERYLS-DYDLVITEGFSKAGKDRIVVVKKPEEVEH 123 (171)
T ss_dssp -EE-----------CCHHHHTCHHHHHHHHTT-TCSEEEEESCGGGCCCEEEECSSGGGGGG
T ss_pred -ec-----------CChhhhhCHHHHHHhhCC-CCCEEEECCcCCCCCcEEEEEecccCCCc
Confidence 00 000001134455555 43 3333222 599999999999777766544
|
| >2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25 | Back alignment and structure |
|---|
Probab=99.33 E-value=4.9e-14 Score=120.10 Aligned_cols=158 Identities=9% Similarity=-0.080 Sum_probs=79.1
Q ss_pred CcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCCC--CeEEEEecCCCCCCcccCCcccChHHHHHhcCCCC
Q 021362 107 KHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPP--DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPW 184 (313)
Q Consensus 107 Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~~--~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~~ 184 (313)
|++++|+||||||||||+++|++ +.+|.+++++.+.. ..++++++.... ....++++++.+....+....
T Consensus 2 g~ii~l~G~~GaGKSTl~~~L~~------~~~g~~~i~~d~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~ 73 (189)
T 2bdt_A 2 KKLYIITGPAGVGKSTTCKRLAA------QLDNSAYIEGDIINHMVVGGYRPPWESD--ELLALTWKNITDLTVNFLLAQ 73 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH------HSSSEEEEEHHHHHTTCCTTCCCGGGCH--HHHHHHHHHHHHHHHHHHHTT
T ss_pred CeEEEEECCCCCcHHHHHHHHhc------ccCCeEEEcccchhhhhccccccCccch--hHHHHHHHHHHHHHHHHHhcC
Confidence 68999999999999999999987 55688887764321 122334443211 112355555554332210000
Q ss_pred -CccHHHH--HHHHHHhhcCCCccCCCC--CCcCCCcchhhhhhccCceEEEEcCCccc----cChhh---HHHHHhhcc
Q 021362 185 -TFNPLLL--LNCLKNLRNQGSVYAPSF--DHGVGDPVEDDILVGLQHKVVIVDGNYLF----LDGGV---WKDVSSMFD 252 (313)
Q Consensus 185 -~~~~~~~--~~~l~~l~~~~~~~~~~L--SgG~kqRv~ia~al~~~ar~Li~d~~~ll----lDE~~---~~~l~~l~~ 252 (313)
....+.+ ...++ .+..+ |+||+|++.++. +..+..+++.++.... +|+.. ++.+..+..
T Consensus 74 ~~~ild~~~~~~~~~--------~~~~~~~s~g~~~~~~~i~-L~~~~e~l~~R~~~r~~d~~ld~~~~~~~~~~~~~~~ 144 (189)
T 2bdt_A 74 NDVVLDYIAFPDEAE--------ALAQTVQAKVDDVEIRFII-LWTNREELLRRDALRKKDEQMGERCLELVEEFESKGI 144 (189)
T ss_dssp CEEEEESCCCHHHHH--------HHHHHHHHHCSSEEEEEEE-EECCHHHHHHHTTTSCC----CGGGGHHHHHHHHTTC
T ss_pred CcEEEeeccCHHHHH--------HHHHHHHhcccCCCeEEEE-EeCCHHHHHHHHHhccccccCCHHHHHHHHHHhhcCC
Confidence 0000000 00000 11233 889999988754 1112223333333333 34421 556665543
Q ss_pred c---eEEEEcC-hHHHHH---HHh--hcccccCCchHH
Q 021362 253 E---KWFIEVD-LDTAMQ---RVL--KRHISTGKPPDV 281 (313)
Q Consensus 253 ~---~i~vtHd-~~~~~~---rv~--griv~~G~~~ev 281 (313)
. .+.+||. ++.+.+ +++ |+++..|+++.+
T Consensus 145 ~~~~ii~tsh~~~~~~e~~~~~i~~~g~~~~~~~~~~~ 182 (189)
T 2bdt_A 145 DERYFYNTSHLQPTNLNDIVKNLKTNPRFIFCMAGDPL 182 (189)
T ss_dssp CTTSEEECSSSCGGGHHHHHHHHHHCGGGSCC------
T ss_pred CccEEEeCCCCChhhHHHHHHHHhhCCcEEEeecCCch
Confidence 2 3466887 666655 777 999999988665
|
| >3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A* | Back alignment and structure |
|---|
Probab=99.33 E-value=2.5e-13 Score=141.54 Aligned_cols=148 Identities=10% Similarity=0.066 Sum_probs=85.8
Q ss_pred EEEEccceEEcccc-ccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCCCCeEEEE
Q 021362 77 VVEARCMDEVYDAL-AQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVL 155 (313)
Q Consensus 77 ~l~~~~l~~~y~~~-~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~~~~i~~v 155 (313)
.|++++...-+-.. .+...+++|++|++++|++++|+||||||||||+|+|+++.-- +..| .++
T Consensus 631 ~i~i~~~rHP~le~~~~~~~v~ndisl~~~~g~i~~ItGpNGsGKSTlLr~ial~~~~--aq~G-------------~~v 695 (934)
T 3thx_A 631 RIILKASRHACVEVQDEIAFIPNDVYFEKDKQMFHIITGPNMGGKSTYIRQTGVIVLM--AQIG-------------CFV 695 (934)
T ss_dssp EEEEEEECCTTTTTC--CCCCCEEEEEETTTBCEEEEECCTTSSHHHHHHHHHHHHHH--HHHT-------------CCB
T ss_pred ceEeecCccchhhhcCCceeecccceeecCCCeEEEEECCCCCCHHHHHHHHHHHHHH--HhcC-------------Ccc
Confidence 45565554433211 0122388999999999999999999999999999999544310 2222 112
Q ss_pred ecCCCCCCcccCCcccChHHHHHhcCCCCCccHHHHHHHHHHhhcCCCccCCCCCCcCCCcchhhhhh--ccCceEEEEc
Q 021362 156 PMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILV--GLQHKVVIVD 233 (313)
Q Consensus 156 ~qd~~~~~~~~ltv~e~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~LSgG~kqRv~ia~al--~~~ar~Li~d 233 (313)
|++... +.+.+.+ +.+++.. +.....+|+|++++..++.++ +.++.++++|
T Consensus 696 pa~~~~-----~~~~d~i---------------------~~~ig~~-d~l~~~lStf~~e~~~~a~il~~a~~~sLlLLD 748 (934)
T 3thx_A 696 PCESAE-----VSIVDCI---------------------LARVGAG-DSQLKGVSTFMAEMLETASILRSATKDSLIIID 748 (934)
T ss_dssp SEEEEE-----EECCSEE---------------------EEECC----------CHHHHHHHHHHHHHHHCCTTCEEEEE
T ss_pred cccccc-----chHHHHH---------------------HHhcCch-hhHHHhHhhhHHHHHHHHHHHHhccCCcEEEEe
Confidence 211100 0000000 0011100 111235677777777777766 8889999999
Q ss_pred CCccccCh----hh-HHHHHhhcc----ceEEEEcChHHHHH
Q 021362 234 GNYLFLDG----GV-WKDVSSMFD----EKWFIEVDLDTAMQ 266 (313)
Q Consensus 234 ~~~lllDE----~~-~~~l~~l~~----~~i~vtHd~~~~~~ 266 (313)
++...+|. .+ +..+..+.+ .++|+|||.+.+..
T Consensus 749 Ep~~GlD~~~~~~i~~~il~~l~~~~g~~vl~aTH~~el~~l 790 (934)
T 3thx_A 749 ELGRGTSTYDGFGLAWAISEYIATKIGAFCMFATHFHELTAL 790 (934)
T ss_dssp SCSCSSCHHHHHHHHHHHHHHHHHTTCCEEEEEESCGGGGGG
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHhcCCCEEEEEcCcHHHHHH
Confidence 99999998 23 444455443 24799999887654
|
| >1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A | Back alignment and structure |
|---|
Probab=99.33 E-value=4.1e-12 Score=115.05 Aligned_cols=143 Identities=15% Similarity=0.103 Sum_probs=88.5
Q ss_pred ccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCC--CCeEEEEecCCCCCCcccCCcccChHHHHHhc
Q 021362 103 NVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP--PDVATVLPMDGFHLYLSQLDAMEDPKEAHARR 180 (313)
Q Consensus 103 ~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~--~~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~ 180 (313)
.+++|++++|+||||||||||++.+++.+. .|.+++ |... ...+.|+..+.. . +.+.......
T Consensus 26 gl~~G~i~~i~G~~GsGKTtl~~~l~~~~~-----~g~~~~-g~~~~~~~~v~~~~~e~~--------~-~~~~~r~~~~ 90 (279)
T 1nlf_A 26 NMVAGTVGALVSPGGAGKSMLALQLAAQIA-----GGPDLL-EVGELPTGPVIYLPAEDP--------P-TAIHHRLHAL 90 (279)
T ss_dssp TEETTSEEEEEESTTSSHHHHHHHHHHHHH-----TCCCTT-CCCCCCCCCEEEEESSSC--------H-HHHHHHHHHH
T ss_pred CccCCCEEEEEcCCCCCHHHHHHHHHHHHh-----cCCCcC-CCccCCCccEEEEECCCC--------H-HHHHHHHHHH
Confidence 478999999999999999999999999774 466644 4332 233555544321 1 1111011111
Q ss_pred CCCCCccHHHHHHHHHHhhc--CCCccCCCCCCcCCCcchhhhhhccCceEEEEcCCcc--ccCh-------hhHHHHHh
Q 021362 181 GAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYL--FLDG-------GVWKDVSS 249 (313)
Q Consensus 181 ~~~~~~~~~~~~~~l~~l~~--~~~~~~~~LSgG~kqRv~ia~al~~~ar~Li~d~~~l--llDE-------~~~~~l~~ 249 (313)
+. ........++++.+.. ..+..+..||+|+.|++ ++++.+++++++|++.. .+|+ .++..|.+
T Consensus 91 g~--~~~~~~~~~~~~~l~l~~~~~~~~~~ls~g~~~~i---~~l~~~~~livlDe~~~~~~~d~~~~~~~~~~~~~L~~ 165 (279)
T 1nlf_A 91 GA--HLSAEERQAVADGLLIQPLIGSLPNIMAPEWFDGL---KRAAEGRRLMVLDTLRRFHIEEENASGPMAQVIGRMEA 165 (279)
T ss_dssp HT--TSCHHHHHHHHHHEEECCCTTSCCCTTSHHHHHHH---HHHHTTCSEEEEECGGGGCCSCTTCHHHHHHHHHHHHH
T ss_pred Hh--hcChhhhhhccCceEEeecCCCCcccCCHHHHHHH---HHhcCCCCEEEECCHHHhcCCCcCchHHHHHHHHHHHH
Confidence 11 1233445566777662 34556779999997654 56677899999999998 6686 34555555
Q ss_pred hccc----eEEEEcChHHHH
Q 021362 250 MFDE----KWFIEVDLDTAM 265 (313)
Q Consensus 250 l~~~----~i~vtHd~~~~~ 265 (313)
+.++ +++++|+.....
T Consensus 166 l~~~~g~tvi~i~H~~~~~~ 185 (279)
T 1nlf_A 166 IAADTGCSIVFLHHASKGAA 185 (279)
T ss_dssp HHHHHCCEEEEEEEC-----
T ss_pred HHHHcCCEEEEEecCCCccc
Confidence 5432 469999987653
|
| >1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1 | Back alignment and structure |
|---|
Probab=99.32 E-value=6.1e-15 Score=139.05 Aligned_cols=167 Identities=11% Similarity=0.045 Sum_probs=89.3
Q ss_pred cccccccccCC--CcEEEEECCCCCcHHHHHHHHHHHhcccCCCC----ceeecCCCCCCCeEEEEecCCCCCCcccCCc
Q 021362 96 PTSALASNVNV--KHIVGLAGPPGAGKSTLAAEVVRRINKIWPQK----ASSFDSQVKPPDVATVLPMDGFHLYLSQLDA 169 (313)
Q Consensus 96 ~L~~vsl~i~~--Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~----G~i~~~g~~~~~~i~~v~qd~~~~~~~~ltv 169 (313)
+.+.|+++|.+ |+.++|+||||||||||+++|+|+++ |++ |++++++.... .+ ..+.. ...
T Consensus 157 ~~~~v~~~v~~~lg~k~~IvG~nGsGKSTLlk~L~gl~~---~~~~~e~G~i~i~~~~~~-------~~-~~~~~--~~~ 223 (365)
T 1lw7_A 157 YWKFIPKEARPFFAKTVAILGGESSGKSVLVNKLAAVFN---TTSAWEYGREFVFEKLGG-------DE-QAMQY--SDY 223 (365)
T ss_dssp GGGGSCTTTGGGTCEEEEEECCTTSHHHHHHHHHHHHTT---CEEECCTTHHHHHHSSSS-------CT-TSSCT--TTH
T ss_pred ChhhCCHHHHHhhhCeEEEECCCCCCHHHHHHHHHHHhC---CCcchhhHHHHHHhhcCC-------Cc-ccCCh--hHH
Confidence 45779999999 99999999999999999999999999 998 88876421000 00 00000 011
Q ss_pred ccChHHHHHhcCCCCCccHHHHHHHHHHhhc-CC---CccCCCCCCcCCCcchhhhhh-ccCceEEEEcC---Cc-----
Q 021362 170 MEDPKEAHARRGAPWTFNPLLLLNCLKNLRN-QG---SVYAPSFDHGVGDPVEDDILV-GLQHKVVIVDG---NY----- 236 (313)
Q Consensus 170 ~e~~~~~~~~~~~~~~~~~~~~~~~l~~l~~-~~---~~~~~~LSgG~kqRv~ia~al-~~~ar~Li~d~---~~----- 236 (313)
+++.+..... ........+.+.. .. +.....+|+|++|+..++.+. ..+++++++|+ ++
T Consensus 224 -~~I~~~~q~~-------~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~lllLdE~~~p~~~~g~ 295 (365)
T 1lw7_A 224 -PQMALGHQRY-------IDYAVRHSHKIAFIDTDFITTQAFCIQYEGKAHPFLDSMIKEYPFDVTILLKNNTEWVDDGL 295 (365)
T ss_dssp -HHHHHHHHHH-------HHHHHHHCSSEEEESSCHHHHHHHHHHHHSCCCHHHHHHHHHSCCSEEEEEECCCC------
T ss_pred -HHHHHHHHHH-------HHHHHhccCCEEEEeCCchHHHHHHHHHcCCCCHHHHHHHhhcCCCEEEECCCCCCcccCCC
Confidence 2222211000 0000000011110 00 011224456677887776665 35788888775 33
Q ss_pred -cccCh----hhHHHHHhhcc----ceEEEEcCh-HHHHH---HHhhcccccCCchHHHH
Q 021362 237 -LFLDG----GVWKDVSSMFD----EKWFIEVDL-DTAMQ---RVLKRHISTGKPPDVAK 283 (313)
Q Consensus 237 -lllDE----~~~~~l~~l~~----~~i~vtHd~-~~~~~---rv~griv~~G~~~ev~~ 283 (313)
+.+|+ .+.+.|.++.. ..++++|.- ..... .++.+++..|.+.++..
T Consensus 296 ~~sld~~~r~~l~~~l~~l~~~~~~~ililde~~~~~r~~~~i~~i~~~l~~~~~~~~~~ 355 (365)
T 1lw7_A 296 RSLGSQKQRQQFQQLLKKLLDKYKVPYIEIESPSYLDRYNQVKAVIEKVLNEEEISELQN 355 (365)
T ss_dssp -----CCSHHHHHHHHHHHHHGGGCCCEEEECSSHHHHHHHHHHHHHHHTSCCCCSSCCC
T ss_pred cCCccHHHHHHHHHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHHHhcccchhHhhc
Confidence 56787 45555544432 347888752 22222 33366777777666533
|
| >2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1 | Back alignment and structure |
|---|
Probab=99.32 E-value=6.5e-14 Score=137.62 Aligned_cols=49 Identities=16% Similarity=0.133 Sum_probs=46.4
Q ss_pred cccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCC
Q 021362 96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK 147 (313)
Q Consensus 96 ~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~ 147 (313)
+++++++.+++|++++|+||||||||||+++|+|+++ |++|.|.+.|..
T Consensus 249 ~l~~l~~~v~~g~~i~I~GptGSGKTTlL~aL~~~i~---~~~giitied~~ 297 (511)
T 2oap_1 249 VLAYLWLAIEHKFSAIVVGETASGKTTTLNAIMMFIP---PDAKVVSIEDTR 297 (511)
T ss_dssp HHHHHHHHHHTTCCEEEEESTTSSHHHHHHHHGGGSC---TTCCEEEEESSC
T ss_pred HHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhCC---CCCCEEEEcCcc
Confidence 7899999999999999999999999999999999999 999999998854
|
| >3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=99.31 E-value=1.2e-12 Score=112.50 Aligned_cols=31 Identities=26% Similarity=0.564 Sum_probs=26.4
Q ss_pred ccccCCCcEEEEECCCCCcHHHHHHHHHHHh
Q 021362 101 ASNVNVKHIVGLAGPPGAGKSTLAAEVVRRI 131 (313)
Q Consensus 101 sl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~ 131 (313)
|+++.+|++++|+||||||||||+++|+|++
T Consensus 1 s~~m~~g~ii~l~Gp~GsGKSTl~~~L~~~~ 31 (205)
T 3tr0_A 1 SNAMNKANLFIISAPSGAGKTSLVRALVKAL 31 (205)
T ss_dssp ----CCCCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CCcCCCCcEEEEECcCCCCHHHHHHHHHhhC
Confidence 5778899999999999999999999999996
|
| >2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.30 E-value=2.5e-13 Score=130.07 Aligned_cols=171 Identities=11% Similarity=0.043 Sum_probs=92.5
Q ss_pred EEEEccceEEccccccccccccccccccCCCcE--EEEECCCCCcHHHHHHHHHHHhcccCCCCceeecC--CCCCCCeE
Q 021362 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHI--VGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDS--QVKPPDVA 152 (313)
Q Consensus 77 ~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Gei--v~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~--g~~~~~~i 152 (313)
.|++++ ++.|++. .|+++||++++|++ ++|+||||||||||+|+|+|+.- .|..... .....+.+
T Consensus 16 ~l~~~~-~~~y~~~-----~L~~vsl~i~~Gei~~vaLvG~nGaGKSTLln~L~G~~l-----~g~~~~~~~~~~~~~~i 84 (427)
T 2qag_B 16 TVPLAG-HVGFDSL-----PDQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNTKF-----EGEPATHTQPGVQLQSN 84 (427)
T ss_dssp -CCCCC-CC-CC-------CHHHHHHSCC-CCEEEEEEECSTTSSSHHHHHHHHTSCC------------CCSSCEEEEE
T ss_pred eEEEee-EEEECCe-----ecCCCceEecCCCeeEEEEECCCCCCHHHHHHHHhCccc-----cCCcCCCCCccceEeeE
Confidence 477778 8999753 28999999999999 99999999999999999999841 1111100 00112358
Q ss_pred EEEecCCCCCCcccCCcccChHHHHHhcC-CCCCc----cHHHHHHHHHHh-hcC------CCccC-------CCCCCcC
Q 021362 153 TVLPMDGFHLYLSQLDAMEDPKEAHARRG-APWTF----NPLLLLNCLKNL-RNQ------GSVYA-------PSFDHGV 213 (313)
Q Consensus 153 ~~v~qd~~~~~~~~ltv~e~~~~~~~~~~-~~~~~----~~~~~~~~l~~l-~~~------~~~~~-------~~LSgG~ 213 (313)
+|++|+...++ .+|+.+|+.++..... ..+.. ....+.++|... +.. .+..+ ...+.|-
T Consensus 85 ~~v~Q~~~l~~--~ltv~D~~~~g~~~~~~~~~~~i~~~i~~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~~l 162 (427)
T 2qag_B 85 TYDLQESNVRL--KLTIVSTVGFGDQINKEDSYKPIVEFIDAQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGHSL 162 (427)
T ss_dssp EEEEEC--CEE--EEEEEEEECCCC-CCHHHHSHHHHHHHHHHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC---
T ss_pred EEEeecCcccc--ccchhhhhhhhhccccchhhhHHHHHHHHHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCCCC
Confidence 99999855433 4899999865421100 00000 012233333332 211 11110 0111121
Q ss_pred CC-cchhhhhhccCceEEEEcCCccccCh----hhHHHHHh-hccce---EEEEcC
Q 021362 214 GD-PVEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSS-MFDEK---WFIEVD 260 (313)
Q Consensus 214 kq-Rv~ia~al~~~ar~Li~d~~~lllDE----~~~~~l~~-l~~~~---i~vtHd 260 (313)
.. =+.++.++...+.+++++.+.-.+.+ .+.+.|++ +...+ ++++.|
T Consensus 163 ~~~Dieilk~L~~~~~vI~Vi~KtD~Lt~~E~~~l~~~I~~~L~~~gi~I~~is~~ 218 (427)
T 2qag_B 163 KSLDLVTMKKLDSKVNIIPIIAKADAISKSELTKFKIKITSELVSNGVQIYQFPTD 218 (427)
T ss_dssp CHHHHHHHHHTCSCSEEEEEESCGGGSCHHHHHHHHHHHHHHHBTTBCCCCCCC--
T ss_pred CHHHHHHHHHHhhCCCEEEEEcchhccchHHHHHHHHHHHHHHHHcCCcEEecCCC
Confidence 11 15677788888999999998888866 44555554 43333 355544
|
| >3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B* | Back alignment and structure |
|---|
Probab=99.30 E-value=3.1e-13 Score=125.77 Aligned_cols=70 Identities=14% Similarity=0.063 Sum_probs=54.8
Q ss_pred ccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCCCC--------------eEEEEecCCCCCCcccCC
Q 021362 103 NVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPD--------------VATVLPMDGFHLYLSQLD 168 (313)
Q Consensus 103 ~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~~~--------------~i~~v~qd~~~~~~~~lt 168 (313)
..++|++++|+||||||||||+++|+|+++ |++|+|.+.|.+..+ .+.+++|+.... +.++
T Consensus 125 ~~~~g~vi~lvG~nGaGKTTll~~Lag~l~---~~~g~V~l~g~D~~r~~a~eql~~~~~~~gv~~v~q~~~~~--p~~~ 199 (328)
T 3e70_C 125 KAEKPYVIMFVGFNGSGKTTTIAKLANWLK---NHGFSVVIAASDTFRAGAIEQLEEHAKRIGVKVIKHSYGAD--PAAV 199 (328)
T ss_dssp SSCSSEEEEEECCTTSSHHHHHHHHHHHHH---HTTCCEEEEEECCSSTTHHHHHHHHHHHTTCEEECCCTTCC--HHHH
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHHHH---hcCCEEEEEeecccccchHHHHHHHHHHcCceEEeccccCC--HHHH
Confidence 447899999999999999999999999999 999999998876432 144777764322 2467
Q ss_pred cccChHHHH
Q 021362 169 AMEDPKEAH 177 (313)
Q Consensus 169 v~e~~~~~~ 177 (313)
+++|+.++.
T Consensus 200 v~e~l~~~~ 208 (328)
T 3e70_C 200 AYDAIQHAK 208 (328)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 788877654
|
| >2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A* | Back alignment and structure |
|---|
Probab=99.29 E-value=1.7e-13 Score=127.96 Aligned_cols=79 Identities=23% Similarity=0.229 Sum_probs=67.6
Q ss_pred ccEEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCC------
Q 021362 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP------ 148 (313)
Q Consensus 75 m~~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~------ 148 (313)
|.+|+++++++.|+... +|+++||++.+|++++|+||||||||||+++|+|++. |++|+|.+.+.+.
T Consensus 27 i~~ie~~~~~~~~~~~~----~l~~i~~~~~~g~~v~i~G~~GaGKSTLl~~l~g~~~---~~~g~v~i~~~d~~~~~~~ 99 (337)
T 2qm8_A 27 ITLAESRRADHRAAVRD----LIDAVLPQTGRAIRVGITGVPGVGKSTTIDALGSLLT---AAGHKVAVLAVDPSSTRTG 99 (337)
T ss_dssp HHHHTCSSHHHHHHHHH----HHHHHGGGCCCSEEEEEECCTTSCHHHHHHHHHHHHH---HTTCCEEEEEECGGGGSSC
T ss_pred HHHHeeCCcccccChHH----HHHhCCcccCCCeEEEEECCCCCCHHHHHHHHHHhhh---hCCCEEEEEEEcCcccccc
Confidence 55799999999998766 9999999999999999999999999999999999999 9999998877542
Q ss_pred ------CCeEEEEecCCC
Q 021362 149 ------PDVATVLPMDGF 160 (313)
Q Consensus 149 ------~~~i~~v~qd~~ 160 (313)
...+++++|++.
T Consensus 100 ~~~~~~~~~i~~v~q~~~ 117 (337)
T 2qm8_A 100 GSILGDKTRMARLAIDRN 117 (337)
T ss_dssp CCSSCCGGGSTTGGGCTT
T ss_pred cchHHHhhhheeeccCcc
Confidence 123566777643
|
| >1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25 | Back alignment and structure |
|---|
Probab=99.27 E-value=2.3e-13 Score=115.79 Aligned_cols=129 Identities=18% Similarity=0.103 Sum_probs=73.9
Q ss_pred ccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCC------CCeEEEEecCCCCCCcccCCcccChHHH
Q 021362 103 NVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP------PDVATVLPMDGFHLYLSQLDAMEDPKEA 176 (313)
Q Consensus 103 ~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~------~~~i~~v~qd~~~~~~~~ltv~e~~~~~ 176 (313)
.+++|++++|+||||||||||+++|+|. ++.|.|.+++.+. ...++|++|+.. ..+++.+++.+.
T Consensus 5 ~i~~g~~i~l~G~~GsGKSTl~~~La~~-----~~~g~i~i~~d~~~~~~~~~~~~~~~~~~~~----~~~~v~~~l~~~ 75 (191)
T 1zp6_A 5 DDLGGNILLLSGHPGSGKSTIAEALANL-----PGVPKVHFHSDDLWGYIKHGRIDPWLPQSHQ----QNRMIMQIAADV 75 (191)
T ss_dssp -CCTTEEEEEEECTTSCHHHHHHHHHTC-----SSSCEEEECTTHHHHTCCSSCCCTTSSSHHH----HHHHHHHHHHHH
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHhc-----cCCCeEEEcccchhhhhhcccccCCccchhh----hhHHHHHHHHHH
Confidence 4789999999999999999999999995 5689898887531 112344444321 125677776554
Q ss_pred HHhc---CCCCCccHHHHH-HHHHHhhcCCCccCCCCCCcCCCcchhhhhhccCceEEEEcCCccccChhhHHHHHhh
Q 021362 177 HARR---GAPWTFNPLLLL-NCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSM 250 (313)
Q Consensus 177 ~~~~---~~~~~~~~~~~~-~~l~~l~~~~~~~~~~LSgG~kqRv~ia~al~~~ar~Li~d~~~lllDE~~~~~l~~l 250 (313)
.... +.....+. ... ..++.+.. .+..+..+|+|++|++.+++++..+ |+++ +|+...+.+.+.
T Consensus 76 ~~~~~~~~~~~~~~~-~~~~~~l~~~~~-~~~~~~~ls~~~~~~v~~~R~~~r~-------~~~l-ld~~~~~~~~~~ 143 (191)
T 1zp6_A 76 AGRYAKEGYFVILDG-VVRPDWLPAFTA-LARPLHYIVLRTTAAEAIERCLDRG-------GDSL-SDPLVVADLHSQ 143 (191)
T ss_dssp HHHHHHTSCEEEECS-CCCTTTTHHHHT-TCSCEEEEEEECCHHHHHHHHHTTC-------TTSC-CCHHHHHHHHHH
T ss_pred HHHHhccCCeEEEec-cCcHHHHHHHHh-cCCCeEEEEecCCHHHHHHHHHhcC-------CCcc-CCHHHHHHHHHH
Confidence 3211 11000000 000 00111110 1223458999999999997777654 4443 577544444443
|
| >1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A* | Back alignment and structure |
|---|
Probab=99.26 E-value=6.5e-14 Score=130.45 Aligned_cols=132 Identities=14% Similarity=0.055 Sum_probs=86.3
Q ss_pred EEEEccceEEccccccccccccccccccCCC-------cEEEEECCCCCcHHHHHHHHHHHh----cccCCCCceeecCC
Q 021362 77 VVEARCMDEVYDALAQRLLPTSALASNVNVK-------HIVGLAGPPGAGKSTLAAEVVRRI----NKIWPQKASSFDSQ 145 (313)
Q Consensus 77 ~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~G-------eiv~l~GpNGsGKSTLlk~l~gl~----~~~~p~~G~i~~~g 145 (313)
+++.+++++.|++.. +++++++.+..| +.++|.||||+|||||+++|+|.+ . +++|.+..++
T Consensus 18 ~lr~~~l~~~~g~~~----~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~---~~sg~~~~~~ 90 (334)
T 1in4_A 18 FLRPKSLDEFIGQEN----VKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTNIH---VTSGPVLVKQ 90 (334)
T ss_dssp TTSCSSGGGCCSCHH----HHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHHTCCEE---EEETTTCCSH
T ss_pred HcCCccHHHccCcHH----HHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEE---EEechHhcCH
Confidence 467789999998776 899999999876 899999999999999999999998 5 7788877654
Q ss_pred CC--------CCCeEEEEecCCCCCCcccCCcccChHHHHHhcCCC----CCccHHHHHHHHHHhhc-CCCccCCCCCCc
Q 021362 146 VK--------PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAP----WTFNPLLLLNCLKNLRN-QGSVYAPSFDHG 212 (313)
Q Consensus 146 ~~--------~~~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~----~~~~~~~~~~~l~~l~~-~~~~~~~~LSgG 212 (313)
.+ ....+.++.+... +.. ++.+++......++.. .......+...++.+.. ....++..||+|
T Consensus 91 ~~l~~~~~~~~~~~v~~iDE~~~-l~~---~~~e~L~~~~~~~~~~i~~~~~~~~~~i~~~l~~~~li~at~~~~~Ls~~ 166 (334)
T 1in4_A 91 GDMAAILTSLERGDVLFIDEIHR-LNK---AVEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQPFTLVGATTRSGLLSSP 166 (334)
T ss_dssp HHHHHHHHHCCTTCEEEEETGGG-CCH---HHHHHHHHHHHTSCCCC---------------CCCEEEEEESCGGGSCHH
T ss_pred HHHHHHHHHccCCCEEEEcchhh-cCH---HHHHHHHHHHHhcccceeeccCcccccccccCCCeEEEEecCCcccCCHH
Confidence 32 1345777877633 221 4566654333332211 11112233334444442 244566799999
Q ss_pred CCCcchh
Q 021362 213 VGDPVED 219 (313)
Q Consensus 213 ~kqRv~i 219 (313)
++||+.+
T Consensus 167 l~sR~~l 173 (334)
T 1in4_A 167 LRSRFGI 173 (334)
T ss_dssp HHTTCSE
T ss_pred HHHhcCc
Confidence 9999977
|
| >1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11 | Back alignment and structure |
|---|
Probab=99.26 E-value=2.9e-13 Score=126.99 Aligned_cols=118 Identities=16% Similarity=0.164 Sum_probs=80.2
Q ss_pred ccccc-ccccCCCcEEEEECCCCCcHHHHHHHHHHHh--cccCCCC----ce-eecCCCCC--CCeEEEEecCCCCCCcc
Q 021362 96 PTSAL-ASNVNVKHIVGLAGPPGAGKSTLAAEVVRRI--NKIWPQK----AS-SFDSQVKP--PDVATVLPMDGFHLYLS 165 (313)
Q Consensus 96 ~L~~v-sl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~--~~~~p~~----G~-i~~~g~~~--~~~i~~v~qd~~~~~~~ 165 (313)
.|+.+ .+.|++|++++|+||||||||||++.++++. + |++ |. |++++.+. ++++++++|... +..
T Consensus 119 ~LD~lL~ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~---~~~Gg~~G~vi~i~~e~~~~~~~i~~i~q~~~-~~~- 193 (349)
T 1pzn_A 119 SLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLP---PEEGGLNGSVIWIDTENTFRPERIREIAQNRG-LDP- 193 (349)
T ss_dssp HHHHHHTSSEESSEEEEEEESTTSSHHHHHHHHHHHTTSC---GGGTSCSCEEEEEESSSCCCHHHHHHHHHTTT-CCH-
T ss_pred HHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHhccc---hhcCCCCCeEEEEeCCCCCCHHHHHHHHHHcC-CCH-
Confidence 56665 6899999999999999999999999999998 5 666 57 78887664 244666777633 222
Q ss_pred cCCcccChHHHHHhcCCCCCccHHHHHHHHHHhhcCCCccCCCCCCcCCCcchhhhhhccCceEEEEcCCccccCh
Q 021362 166 QLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDG 241 (313)
Q Consensus 166 ~ltv~e~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~LSgG~kqRv~ia~al~~~ar~Li~d~~~lllDE 241 (313)
-++.+|+.+.. ........++++.+. ..+.+||+|| .++++|++|++..++|.
T Consensus 194 -~~v~~ni~~~~-------~~~~~~~~~~l~~~~----~~~~~lS~G~-----------~~~~llIlDs~ta~ld~ 246 (349)
T 1pzn_A 194 -DEVLKHIYVAR-------AFNSNHQMLLVQQAE----DKIKELLNTD-----------RPVKLLIVDSLTSHFRS 246 (349)
T ss_dssp -HHHGGGEEEEE-------CCSHHHHHHHHHHHH----HHHHHSSSSS-----------SCEEEEEEETSSTTHHH
T ss_pred -HHHhhCEEEEe-------cCChHHHHHHHHHHH----HHHHHhcccc-----------CCCCEEEEeCchHhhhh
Confidence 25666664421 011122223333321 2234689998 35899999999999986
|
| >3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A* | Back alignment and structure |
|---|
Probab=99.26 E-value=3.9e-12 Score=123.70 Aligned_cols=48 Identities=25% Similarity=0.175 Sum_probs=46.6
Q ss_pred cccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCC
Q 021362 96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK 147 (313)
Q Consensus 96 ~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~ 147 (313)
+|+++||+|++ ++++|+||||||||||+++|+|+++ |++|+|.++|.+
T Consensus 19 ~l~~vsl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~---p~~G~I~~~g~~ 66 (483)
T 3euj_A 19 GFFARTFDFDE-LVTTLSGGNGAGKSTTMAGFVTALI---PDLTLLNFRNTT 66 (483)
T ss_dssp TEEEEEEECCS-SEEEEECCTTSSHHHHHHHHHHHHC---CCTTTCCCCCTT
T ss_pred cccceEEEEcc-ceEEEECCCCCcHHHHHHHHhcCCC---CCCCEEEECCEE
Confidence 89999999999 9999999999999999999999999 999999999976
|
| >2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A | Back alignment and structure |
|---|
Probab=99.25 E-value=1.9e-12 Score=125.84 Aligned_cols=77 Identities=16% Similarity=0.125 Sum_probs=63.6
Q ss_pred ccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCCC--------------CeEEEEecCCCCC
Q 021362 97 TSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPP--------------DVATVLPMDGFHL 162 (313)
Q Consensus 97 L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~~--------------~~i~~v~qd~~~~ 162 (313)
-+++||++++|++++|+|+||||||||+++|+|+++ |++|+|.+.+.+.. ..++|++|+....
T Consensus 283 ~~~Isl~i~~GeVI~LVGpNGSGKTTLl~~LAgll~---~~~G~V~l~g~D~~r~aa~eQL~~~~~r~~I~vV~Q~~~~~ 359 (503)
T 2yhs_A 283 DEPLNVEGKAPFVILMVGVNGVGKTTTIGKLARQFE---QQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGAD 359 (503)
T ss_dssp BCCCCCCSCTTEEEEEECCTTSSHHHHHHHHHHHHH---HTTCCEEEECCCTTCHHHHHHHHHHHHHHTCCEECCSTTCC
T ss_pred CCCceeeccCCeEEEEECCCcccHHHHHHHHHHHhh---hcCCeEEEecCcccchhhHHHHHHHHHhcCceEEecccCcC
Confidence 368999999999999999999999999999999999 99999999765532 1378999985433
Q ss_pred CcccCCcccChHHHHH
Q 021362 163 YLSQLDAMEDPKEAHA 178 (313)
Q Consensus 163 ~~~~ltv~e~~~~~~~ 178 (313)
+ .+++++|+.++..
T Consensus 360 p--~~tV~e~l~~a~~ 373 (503)
T 2yhs_A 360 S--ASVIFDAIQAAKA 373 (503)
T ss_dssp H--HHHHHHHHHHHHH
T ss_pred H--HHHHHHHHHHHHh
Confidence 2 4788999888754
|
| >2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2} | Back alignment and structure |
|---|
Probab=99.24 E-value=6.9e-12 Score=109.13 Aligned_cols=142 Identities=7% Similarity=-0.013 Sum_probs=79.6
Q ss_pred ccccccc-ccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCCCCeEEEEecCCCCCCcccCCcccChH
Q 021362 96 PTSALAS-NVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPK 174 (313)
Q Consensus 96 ~L~~vsl-~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~~~~i~~v~qd~~~~~~~~ltv~e~~~ 174 (313)
.|+++.+ .+++|++++|+||||||||||++.|++... ++.|.+.+. ..+. +.. .+.
T Consensus 11 ~Ld~~~~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~---~~~~~v~~~-----------~~~~--------~~~-~~~ 67 (235)
T 2w0m_A 11 DFDKLIQGGIPQGFFIALTGEPGTGKTIFSLHFIAKGL---RDGDPCIYV-----------TTEE--------SRD-SII 67 (235)
T ss_dssp HHHGGGTTSEETTCEEEEECSTTSSHHHHHHHHHHHHH---HHTCCEEEE-----------ESSS--------CHH-HHH
T ss_pred HHHHHhcCCCcCCCEEEEEcCCCCCHHHHHHHHHHHHH---HCCCeEEEE-----------Eccc--------CHH-HHH
Confidence 7889888 899999999999999999999999999887 666655432 2221 000 000
Q ss_pred HHHHhcCCCCCccH-HH---HHHHHHHhhcCCCccCCCCCCcCCCcchhhhhhccCce--EEEEcCCcccc--Ch----h
Q 021362 175 EAHARRGAPWTFNP-LL---LLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHK--VVIVDGNYLFL--DG----G 242 (313)
Q Consensus 175 ~~~~~~~~~~~~~~-~~---~~~~l~~l~~~~~~~~~~LSgG~kqRv~ia~al~~~ar--~Li~d~~~lll--DE----~ 242 (313)
......+....... .. +......++ ........|.++.++...+.+...+++ ++++|++..++ |+ .
T Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~~~~d~~~~~~ 145 (235)
T 2w0m_A 68 RQAKQFNWDFEEYIEKKLIIIDALMKEKE--DQWSLVNLTPEELVNKVIEAKQKLGYGKARLVIDSVSALFLDKPAMARK 145 (235)
T ss_dssp HHHHHTTCCCGGGBTTTEEEEECCC------CTTBCSSCCHHHHHHHHHHHHHHHCSSCEEEEEETGGGGSSSCGGGHHH
T ss_pred HHHHHhcchHHHHhhCCEEEEeccccccC--ceeeecCCCHHHHHHHHHHHHHhhCCCceEEEEECchHhhcCCHHHHHH
Confidence 00001111100000 00 000000000 001112346777666666555556788 99999999777 86 4
Q ss_pred hHHHHHhhccc----eEEEEcChH
Q 021362 243 VWKDVSSMFDE----KWFIEVDLD 262 (313)
Q Consensus 243 ~~~~l~~l~~~----~i~vtHd~~ 262 (313)
+++.|+++.++ .++++|+..
T Consensus 146 ~~~~l~~~~~~~~~~vi~~~h~~~ 169 (235)
T 2w0m_A 146 ISYYLKRVLNKWNFTIYATSQYAI 169 (235)
T ss_dssp HHHHHHHHHHHTTEEEEEEEC---
T ss_pred HHHHHHHHHHhCCCeEEEEeccCc
Confidence 55566655432 469999984
|
| >2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.23 E-value=8.1e-14 Score=126.49 Aligned_cols=119 Identities=15% Similarity=0.014 Sum_probs=74.9
Q ss_pred cccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCCCC--------eEEEEecCCCCCCcccC
Q 021362 96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPD--------VATVLPMDGFHLYLSQL 167 (313)
Q Consensus 96 ~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~~~--------~i~~v~qd~~~~~~~~l 167 (313)
+++++++.+++| ++|.||||||||||+++|+|.+. + |.+.++|.+... .++++||...... +.+
T Consensus 35 ~l~~~~l~~~~G--vlL~Gp~GtGKTtLakala~~~~---~--~~i~i~g~~l~~~~~~~~~~~i~~vf~~a~~~~-p~i 106 (274)
T 2x8a_A 35 QFKALGLVTPAG--VLLAGPPGCGKTLLAKAVANESG---L--NFISVKGPELLNMYVGESERAVRQVFQRAKNSA-PCV 106 (274)
T ss_dssp HHHHTTCCCCSE--EEEESSTTSCHHHHHHHHHHHTT---C--EEEEEETTTTCSSTTHHHHHHHHHHHHHHHHTC-SEE
T ss_pred HHHHcCCCCCCe--EEEECCCCCcHHHHHHHHHHHcC---C--CEEEEEcHHHHhhhhhHHHHHHHHHHHHHHhcC-CCe
Confidence 899999999999 99999999999999999999986 5 688888765321 2455666521111 135
Q ss_pred CcccChHHHHHhcCCCCCccHHHHHHHHHHhhcCCCccCCCCCCcCCCcchhhhhhccCceEEEEcCCccccCh
Q 021362 168 DAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDG 241 (313)
Q Consensus 168 tv~e~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~LSgG~kqRv~ia~al~~~ar~Li~d~~~lllDE 241 (313)
++.|++......++.. .. .......+....+|||||+||+.+ +.++..+|+++ ||
T Consensus 107 ~~~Deid~~~~~r~~~------~~----~~~~~~~~~~l~~Lsgg~~~~~~i-------~ia~tn~p~~L--D~ 161 (274)
T 2x8a_A 107 IFFDEVDALCPRRSDR------ET----GASVRVVNQLLTEMDGLEARQQVF-------IMAATNRPDII--DP 161 (274)
T ss_dssp EEEETCTTTCC-------------------CTTHHHHHHHHHHTCCSTTCEE-------EEEEESCGGGS--CH
T ss_pred EeeehhhhhhcccCCC------cc----hHHHHHHHHHHHhhhcccccCCEE-------EEeecCChhhC--CH
Confidence 5666665432111100 00 000000122345799999999999 56666666543 64
|
| >1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A* | Back alignment and structure |
|---|
Probab=99.22 E-value=5.8e-12 Score=129.65 Aligned_cols=130 Identities=12% Similarity=0.084 Sum_probs=77.2
Q ss_pred cccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCCCCeEEEEecCCCCCCcccCCcccChHH
Q 021362 96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKE 175 (313)
Q Consensus 96 ~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~~~~i~~v~qd~~~~~~~~ltv~e~~~~ 175 (313)
+++|++|+ ++|++++|+||||||||||+|+|+|+... ...|...-. ....+++++| .+. .+++.+++..
T Consensus 597 vlndisl~-~~g~i~~ItGpNGsGKSTlLr~iagl~~~--~q~G~~vpa---~~~~i~~~~~---i~~--~~~~~d~l~~ 665 (800)
T 1wb9_A 597 IANPLNLS-PQRRMLIITGPNMGGKSTYMRQTALIALM--AYIGSYVPA---QKVEIGPIDR---IFT--RVGAADDLAS 665 (800)
T ss_dssp CCEEEEEC-SSSCEEEEECCTTSSHHHHHHHHHHHHHH--HTTTCCBSS---SEEEECCCCE---EEE--EEC-------
T ss_pred eeeccccc-CCCcEEEEECCCCCChHHHHHHHHHHHHH--HhcCcccch---hcccceeHHH---HHh--hCCHHHHHHh
Confidence 89999999 99999999999999999999999998630 233321100 0011232222 111 2344444432
Q ss_pred HHHhcCCCCCccHHHHHHHHHHhhcCCCccCCCCCCcCCCcchhhhhhccCceEEEEcCCccccCh----h-hHHHHHhh
Q 021362 176 AHARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDG----G-VWKDVSSM 250 (313)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~LSgG~kqRv~ia~al~~~ar~Li~d~~~lllDE----~-~~~~l~~l 250 (313)
. ...+|++|++ ++.+...+.++.++++|++...+|. . .+..+..+
T Consensus 666 ~-----------------------------~stf~~e~~~-~~~il~~a~~psLlLLDEp~~Gtd~~d~~~i~~~ll~~l 715 (800)
T 1wb9_A 666 G-----------------------------RSTFMVEMTE-TANILHNATEYSLVLMDEIGRGTSTYDGLSLAWACAENL 715 (800)
T ss_dssp ---------------------------------CHHHHHH-HHHHHHHCCTTEEEEEESCCCCSSSSHHHHHHHHHHHHH
T ss_pred h-----------------------------hhhhhHHHHH-HHHHHHhccCCCEEEEECCCCCCChhHHHHHHHHHHHHH
Confidence 1 1134444443 3333445678999999999888887 2 25556665
Q ss_pred cc----ceEEEEcChHHHHH
Q 021362 251 FD----EKWFIEVDLDTAMQ 266 (313)
Q Consensus 251 ~~----~~i~vtHd~~~~~~ 266 (313)
.+ .++++|||.+++..
T Consensus 716 ~~~~g~~vl~~TH~~el~~l 735 (800)
T 1wb9_A 716 ANKIKALTLFATHYFELTQL 735 (800)
T ss_dssp HHTTCCEEEEECSCGGGGGH
T ss_pred HhccCCeEEEEeCCHHHHHH
Confidence 44 24799999987643
|
| >1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1 | Back alignment and structure |
|---|
Probab=99.22 E-value=5.3e-15 Score=137.07 Aligned_cols=137 Identities=11% Similarity=0.030 Sum_probs=79.3
Q ss_pred cEEEEECCCCCcHHHHHHHHHHHh--------cccCCCCceeecCCCCCCC-----------------------eEEEE-
Q 021362 108 HIVGLAGPPGAGKSTLAAEVVRRI--------NKIWPQKASSFDSQVKPPD-----------------------VATVL- 155 (313)
Q Consensus 108 eiv~l~GpNGsGKSTLlk~l~gl~--------~~~~p~~G~i~~~g~~~~~-----------------------~i~~v- 155 (313)
++++|+|+||||||||+|.|.|+. . |+.|+|.++|..... .++++
T Consensus 5 ~v~~i~G~~GaGKTTll~~l~~~~~~~~~aVi~---~d~G~i~idg~~l~~~~~~~~el~~gCicc~~~~~~~~~l~~l~ 81 (318)
T 1nij_A 5 AVTLLTGFLGAGKTTLLRHILNEQHGYKIAVIE---NEFGEVSVDDQLIGDRATQIKTLTNGCICCSRSNELEDALLDLL 81 (318)
T ss_dssp EEEEEEESSSSSCHHHHHHHHHSCCCCCEEEEC---SSCCSCCEEEEEECTTSCEEEEETTSCEEECTTSCHHHHHHHHH
T ss_pred cEEEEEecCCCCHHHHHHHHHhhcCCCcEEEEE---ecCcccCccHHHHhCCCCCEEEECCCceEEcccHHHHHHHHHHH
Confidence 689999999999999999999986 5 899999998854221 12223
Q ss_pred --ecCCCCCCcccCCcccChHHH--HHh-cCCCCCccHHHHH------HHHHHhhcC-CCccCCCCCCcCCCcchhhhhh
Q 021362 156 --PMDGFHLYLSQLDAMEDPKEA--HAR-RGAPWTFNPLLLL------NCLKNLRNQ-GSVYAPSFDHGVGDPVEDDILV 223 (313)
Q Consensus 156 --~qd~~~~~~~~ltv~e~~~~~--~~~-~~~~~~~~~~~~~------~~l~~l~~~-~~~~~~~LSgG~kqRv~ia~al 223 (313)
+|+....+ ++++.|+..++ ... .... .+ .... .++..++.. ......+||+||+||+..
T Consensus 82 ~~~q~~~~~~--~~~v~E~~~l~~p~~~~~~~~--~~-~~~~~~~~l~~~l~~vd~~~~~~~~~~ls~g~~Q~~~a---- 152 (318)
T 1nij_A 82 DNLDKGNIQF--DRLVIECTGMADPGPIIQTFF--SH-EVLCQRYLLDGVIALVDAVHADEQMNQFTIAQSQVGYA---- 152 (318)
T ss_dssp HHHHHTSCCC--SEEEEEEETTCCHHHHHHHHH--HS-HHHHHHEEEEEEEEEEETTTHHHHHHHCHHHHHHHHTC----
T ss_pred hHHhcCCCCC--CEEEEeCCCCCCHHHHHHHHh--cC-ccccCeEEECCEEEEEEHHHHHHHHhhchHHHHHHHhC----
Confidence 33322111 24555554321 000 0000 00 0000 000011100 111233789999999987
Q ss_pred ccCceEEEEcCCccccCh--hhHHHHHhhccc--eEEEEcCh
Q 021362 224 GLQHKVVIVDGNYLFLDG--GVWKDVSSMFDE--KWFIEVDL 261 (313)
Q Consensus 224 ~~~ar~Li~d~~~lllDE--~~~~~l~~l~~~--~i~vtHd~ 261 (313)
+++++..++++ || .+.+.|+++... .++++|+.
T Consensus 153 ---d~ill~k~dl~--de~~~l~~~l~~l~~~~~ii~~sh~~ 189 (318)
T 1nij_A 153 ---DRILLTKTDVA--GEAEKLHERLARINARAPVYTVTHGD 189 (318)
T ss_dssp ---SEEEEECTTTC--SCTHHHHHHHHHHCSSSCEEECCSSC
T ss_pred ---CEEEEECcccC--CHHHHHHHHHHHhCCCCeEEEecccC
Confidence 77788888876 75 677777776532 46888953
|
| >1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8 | Back alignment and structure |
|---|
Probab=99.19 E-value=5.7e-12 Score=115.76 Aligned_cols=103 Identities=13% Similarity=0.058 Sum_probs=66.1
Q ss_pred cccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeec---CCCCCC--------CeEEEEecCCCCC--------
Q 021362 102 SNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFD---SQVKPP--------DVATVLPMDGFHL-------- 162 (313)
Q Consensus 102 l~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~---~g~~~~--------~~i~~v~qd~~~~-------- 162 (313)
|++..|++++|+||||||||||+|+|+|+.+ |++|+|.+ +|++.. +.+++++|.+...
T Consensus 164 f~~l~geiv~l~G~sG~GKSTll~~l~g~~~---~~~G~i~~~~~~g~~~t~~~~~~~~~~~g~v~q~p~~~~~~~~~~~ 240 (301)
T 1u0l_A 164 KEYLKGKISTMAGLSGVGKSSLLNAINPGLK---LRVSEVSEKLQRGRHTTTTAQLLKFDFGGYVVDTPGFANLEINDIE 240 (301)
T ss_dssp HHHHSSSEEEEECSTTSSHHHHHHHHSTTCC---CC-------------CCCSCCEEECTTSCEEESSCSSTTCCCCSSC
T ss_pred HHHhcCCeEEEECCCCCcHHHHHHHhccccc---ccccceecccCCCCCceeeeEEEEcCCCCEEEECcCCCccCCCcCC
Confidence 5677899999999999999999999999999 99999998 776532 2478999986421
Q ss_pred ------CcccCCcccChHHHHHhcCCCCCccHHHHHHHHHHhhcC---CCccCCCCCC
Q 021362 163 ------YLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ---GSVYAPSFDH 211 (313)
Q Consensus 163 ------~~~~ltv~e~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~---~~~~~~~LSg 211 (313)
..+++++ +|+.+.... ...+...++.++|+.++.. .+.++.+||.
T Consensus 241 ~~~~~~l~~~~~~-~n~~~~~~~---~~~e~~~~v~~~l~~~~L~~~~~~~~~~~lse 294 (301)
T 1u0l_A 241 PEELKHYFKEFGD-KQCFFSDCN---HVDEPECGVKEAVENGEIAESRYENYVKMFYE 294 (301)
T ss_dssp HHHHGGGSTTSSS-CCCSSTTCC---SSSCSSCHHHHHHHHTSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccc-ccCcCCCCc---CCCCCCcHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 1235788 988875211 1233456788889988853 2334446663
|
| >1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=99.18 E-value=2e-13 Score=123.62 Aligned_cols=137 Identities=17% Similarity=0.059 Sum_probs=86.6
Q ss_pred EEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCC--------
Q 021362 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP-------- 148 (313)
Q Consensus 77 ~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~-------- 148 (313)
..+++++.+.|+... +++++++++++| ++|+||||+|||||+++|++.+. .|.+.+++.+.
T Consensus 49 ~~~l~~l~~~~~~~~----~l~~~~~~~~~g--vll~Gp~GtGKTtl~~~i~~~~~-----~~~i~~~~~~~~~~~~~~~ 117 (278)
T 1iy2_A 49 KEELKEIVEFLKNPS----RFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR-----VPFITASGSDFVEMFVGVG 117 (278)
T ss_dssp HHHHHHHHHHHHCHH----HHHHTTCCCCCE--EEEECCTTSSHHHHHHHHHHHTT-----CCEEEEEHHHHHHSTTTHH
T ss_pred HHHHHHHHHHHHCHH----HHHHcCCCCCCe--EEEECCCcChHHHHHHHHHHHcC-----CCEEEecHHHHHHHHhhHH
Confidence 355678888887665 899999999999 89999999999999999999873 67777765321
Q ss_pred CCeEEEEecCCCCCCcccCCcccChHHHHHhcCCCCCccHHHHHHHHHHhhcCCCccCCCCCCcCCCcchhhhhhccCce
Q 021362 149 PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHK 228 (313)
Q Consensus 149 ~~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~LSgG~kqRv~ia~al~~~ar 228 (313)
...+.+++|...... +.+++.|++.......+...........+.+..+ ..+|||||+||+.+ +.
T Consensus 118 ~~~i~~~~~~~~~~~-~~i~~iDeid~l~~~~~~~~~~~~~~~~~~~~~l-------l~~lsgg~~~~~~i-------~~ 182 (278)
T 1iy2_A 118 AARVRDLFETAKRHA-PCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQL-------LVEMDGFEKDTAIV-------VM 182 (278)
T ss_dssp HHHHHHHHHHHHTSC-SEEEEEETHHHHHCC--------CHHHHHHHHHH-------HHHHTTCCTTCCEE-------EE
T ss_pred HHHHHHHHHHHHhcC-CcEEehhhhHhhhcccccccCCcchHHHHHHHHH-------HHHHhCCCCCCCEE-------EE
Confidence 112445666532111 2367888885443221110000011112222221 23579999999999 77
Q ss_pred EEEEcCCccccCh
Q 021362 229 VVIVDGNYLFLDG 241 (313)
Q Consensus 229 ~Li~d~~~lllDE 241 (313)
++..+|++ +|+
T Consensus 183 a~t~~p~~--ld~ 193 (278)
T 1iy2_A 183 AATNRPDI--LDP 193 (278)
T ss_dssp EEESCTTS--SCH
T ss_pred EecCCchh--CCH
Confidence 77777765 675
|
| >2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A* | Back alignment and structure |
|---|
Probab=99.17 E-value=2.2e-11 Score=115.09 Aligned_cols=45 Identities=24% Similarity=0.324 Sum_probs=39.2
Q ss_pred cccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCC-CceeecCC
Q 021362 96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQ-KASSFDSQ 145 (313)
Q Consensus 96 ~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~-~G~i~~~g 145 (313)
+|++++ +++|++++|+||||||||||+++|+|+++ |+ +|.|.+.+
T Consensus 127 ~l~~l~--~~~g~~i~ivG~~GsGKTTll~~l~~~~~---~~~~g~I~~~e 172 (372)
T 2ewv_A 127 KVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYIN---QTKSYHIITIE 172 (372)
T ss_dssp SHHHHT--TSSSEEEEEECSSSSSHHHHHHHHHHHHH---HHSCCEEEEEE
T ss_pred HHHHHh--hcCCCEEEEECCCCCCHHHHHHHHHhhcC---cCCCcEEEEec
Confidence 566654 88999999999999999999999999998 87 89886544
|
| >3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=99.17 E-value=9e-13 Score=136.92 Aligned_cols=142 Identities=15% Similarity=0.091 Sum_probs=96.9
Q ss_pred HHHHHHhcccCCCCceeecCCCCCCCeEEEEecCCCCCCcccCCcccChHHHHHhcCCCCCc---------cHHHHHHHH
Q 021362 125 AEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTF---------NPLLLLNCL 195 (313)
Q Consensus 125 k~l~gl~~~~~p~~G~i~~~g~~~~~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~~~~---------~~~~~~~~l 195 (313)
.|..+.++ |..|+|.++|+++.. +. .+++.+++.+.. .......+ ...+..+.|
T Consensus 386 ~C~g~rl~---~~~~~V~i~G~~i~~-----------~~--~~~v~~~l~~~~-~~~l~~~~~~~~~~~~~~~~~~~~~L 448 (916)
T 3pih_A 386 VCGGRRLN---REALSVKINGLNIHE-----------FT--ELSISEELEFLK-NLNLTEREREIVGELLKEIEKRLEFL 448 (916)
T ss_dssp TTCSCCBC---TTGGGEEETTEEHHH-----------HH--HSBHHHHHHHHH-SCCCCTTTTTTHHHHHHHHHHHHHHH
T ss_pred hcccccCC---hHhcCcEECCccHHH-----------hh--hCCHHHHHHHHH-hccCcHHHHHHHHhhHHHHHHHHHHH
Confidence 44445555 777778777754211 11 256666666532 22221111 112334566
Q ss_pred HHhhcC---CCccCCCCCCcCCCcchhhhhhccCce--EEEEcCCccccCh----hhHHHHHhhccc---eEEEEcChHH
Q 021362 196 KNLRNQ---GSVYAPSFDHGVGDPVEDDILVGLQHK--VVIVDGNYLFLDG----GVWKDVSSMFDE---KWFIEVDLDT 263 (313)
Q Consensus 196 ~~l~~~---~~~~~~~LSgG~kqRv~ia~al~~~ar--~Li~d~~~lllDE----~~~~~l~~l~~~---~i~vtHd~~~ 263 (313)
..++.. .++.+.+|||||+|||+||++|+.++. +|++|+|+..||+ .+++.|+++.+. +|+||||+++
T Consensus 449 ~~vgL~~l~l~r~~~~LSGGe~QRv~LAraL~~~p~~~lllLDEPT~gLD~~~~~~l~~~L~~L~~~G~TvivVtHd~~~ 528 (916)
T 3pih_A 449 VDVGLEYLTLSRSATTLSGGESQRIRLATQIGSGLTGVIYVLDEPTIGLHPRDTERLIKTLKKLRDLGNTVIVVEHDEEV 528 (916)
T ss_dssp HTTTCTTCBTTSBGGGCCHHHHHHHHHHHHHHTTCCSCEEEEECTTTTCCGGGHHHHHHHHHHTTTTTCEEEEECCCHHH
T ss_pred HHcCCccccccCCcccCCHHHHHHHHHHHHHhhCCCCcEEEEECCccCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH
Confidence 667742 467788999999999999999998766 9999999999999 566667766653 4799999998
Q ss_pred HHH--HHh----------hcccccCCchHHHH
Q 021362 264 AMQ--RVL----------KRHISTGKPPDVAK 283 (313)
Q Consensus 264 ~~~--rv~----------griv~~G~~~ev~~ 283 (313)
+.. |++ |++++.|+++++..
T Consensus 529 ~~~aD~ii~lgpgag~~~G~iv~~G~~~e~~~ 560 (916)
T 3pih_A 529 IRNADHIIDIGPGGGTNGGRVVFQGTVDELLK 560 (916)
T ss_dssp HHTCSEEEEEESSSGGGCSEEEEEECHHHHHH
T ss_pred HHhCCEEEEEcCCcccCCCEEEEeechhhhhc
Confidence 766 443 68899999998864
|
| >2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A | Back alignment and structure |
|---|
Probab=99.16 E-value=1.5e-13 Score=122.20 Aligned_cols=123 Identities=13% Similarity=0.031 Sum_probs=76.3
Q ss_pred CCcEEEEECCCCCcHHHHHHHHH---HHhcccCCCCceeecCCCCCCC----eEEEEecCCCCCCcccCCcccChHHHHH
Q 021362 106 VKHIVGLAGPPGAGKSTLAAEVV---RRINKIWPQKASSFDSQVKPPD----VATVLPMDGFHLYLSQLDAMEDPKEAHA 178 (313)
Q Consensus 106 ~Geiv~l~GpNGsGKSTLlk~l~---gl~~~~~p~~G~i~~~g~~~~~----~i~~v~qd~~~~~~~~ltv~e~~~~~~~ 178 (313)
++++++|+||||||||||+++|+ |+.. |+.|++.+++.+... .+..++|++...+ ..++.+++.....
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~lg~~~---~~~G~i~~~~~~~~~~~~~~i~~~~~~~~~~~--~~~v~~~l~~~l~ 100 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNFGLQH---LSSGHFLRENIKASTEVGEMAKQYIEKSLLVP--DHVITRLMMSELE 100 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHCCCC---EEHHHHHHHHHHTTCHHHHHHHHHHHTTCCCC--HHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCeE---ecHHHHHHHHHhcCChHHHHHHHHHHcCCCCC--HHHHHHHHHHHHH
Confidence 47999999999999999999999 8887 999999887643211 1233455543332 3567777766432
Q ss_pred --------hcCCCCCccHHHHHHHHH--Hhh--------------cCCCccCCCCCCcCCCcchhhhhh-ccCceEEEEc
Q 021362 179 --------RRGAPWTFNPLLLLNCLK--NLR--------------NQGSVYAPSFDHGVGDPVEDDILV-GLQHKVVIVD 233 (313)
Q Consensus 179 --------~~~~~~~~~~~~~~~~l~--~l~--------------~~~~~~~~~LSgG~kqRv~ia~al-~~~ar~Li~d 233 (313)
..+.+.. ...+..+.. .++ ...++.+.+||| |+ +++ +.+++++++|
T Consensus 101 ~~~~~~~il~g~~~~--~~~~~~l~~~~~~~~vi~L~~~~~~~l~r~~~r~~~~lSg----rv---~al~~~~P~~lllD 171 (246)
T 2bbw_A 101 NRRGQHWLLDGFPRT--LGQAEALDKICEVDLVISLNIPFETLKDRLSRRWIHPPSG----RV---YNLDFNPPHVHGID 171 (246)
T ss_dssp TCTTSCEEEESCCCS--HHHHHHHHTTCCCCEEEEEECCHHHHHHHHHTEEEETTTT----EE---EETTTSCCSSTTBC
T ss_pred hcCCCeEEEECCCCC--HHHHHHHHhhcCCCEEEEEECCHHHHHHHHHcCCCcCCCC----Cc---cccccCCCcccccc
Confidence 1222322 122222211 111 112445668998 65 444 6778888888
Q ss_pred ----CCccccChh
Q 021362 234 ----GNYLFLDGG 242 (313)
Q Consensus 234 ----~~~lllDE~ 242 (313)
+|+..+|+.
T Consensus 172 ~~~~EP~~~ld~~ 184 (246)
T 2bbw_A 172 DVTGEPLVQQEDD 184 (246)
T ss_dssp TTTCCBCBCCGGG
T ss_pred cccccccccCCCC
Confidence 888888873
|
| >1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8 | Back alignment and structure |
|---|
Probab=99.14 E-value=1.1e-12 Score=120.78 Aligned_cols=111 Identities=12% Similarity=0.058 Sum_probs=63.0
Q ss_pred cccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeec---CCCCCCC------e-EEEEecCCCCCCcc--cCCc
Q 021362 102 SNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFD---SQVKPPD------V-ATVLPMDGFHLYLS--QLDA 169 (313)
Q Consensus 102 l~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~---~g~~~~~------~-i~~v~qd~~~~~~~--~ltv 169 (313)
+++.+|++++|+||||||||||+|+|+|+.. |+.|+|.+ .|+.... . +++++|.+...... .+++
T Consensus 168 ~~~~~G~~~~lvG~sG~GKSTLln~L~g~~~---~~~G~I~~~~~~G~~tt~~~~~~~~~~g~v~dtpg~~~~~l~~lt~ 244 (307)
T 1t9h_A 168 IPHFQDKTTVFAGQSGVGKSSLLNAISPELG---LRTNEISEHLGRGKHTTRHVELIHTSGGLVADTPGFSSLEFTDIEE 244 (307)
T ss_dssp GGGGTTSEEEEEESHHHHHHHHHHHHCC----------------------CCCCCEEEETTEEEESSCSCSSCCCTTCCH
T ss_pred HhhcCCCEEEEECCCCCCHHHHHHHhccccc---ccccceeeecCCCcccccHHHHhhcCCEEEecCCCccccccccCCH
Confidence 7889999999999999999999999999999 99999998 6654321 1 68899986443211 3567
Q ss_pred ccChH--HH-HH-h------cC-CCCCccHHHHHHHHHHhhcCC--CccCCCCCCcCCCc
Q 021362 170 MEDPK--EA-HA-R------RG-APWTFNPLLLLNCLKNLRNQG--SVYAPSFDHGVGDP 216 (313)
Q Consensus 170 ~e~~~--~~-~~-~------~~-~~~~~~~~~~~~~l~~l~~~~--~~~~~~LSgG~kqR 216 (313)
+++. ++ .. . .+ ....+....+.++++.++... ...+..|+.|++||
T Consensus 245 -e~l~~~f~~~~~~~~~C~f~~c~h~~e~~~~v~~aLe~~~L~~~r~~~y~~lls~~~~~ 303 (307)
T 1t9h_A 245 -EELGYTFPDIREKSSSCKFRGCLHLKEPKCAVKQAVEDGELKQYRYDHYVEFMTEIKDR 303 (307)
T ss_dssp -HHHGGGSHHHHHHGGGCSSTTCCSSSCSSCHHHHHHHHTSSCHHHHHHHHHHHHHHHTT
T ss_pred -HHHHHHHHHHHHHhhhccccCCCCccCHHHHHHHHHHhCCChHHHHHHHHHHHHHHhhc
Confidence 7773 32 11 1 12 122333456788888887543 33455666776663
|
| >1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A* | Back alignment and structure |
|---|
Probab=99.13 E-value=3.6e-13 Score=120.05 Aligned_cols=137 Identities=17% Similarity=0.059 Sum_probs=84.3
Q ss_pred EEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCC--------
Q 021362 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP-------- 148 (313)
Q Consensus 77 ~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~-------- 148 (313)
..+++++.+.|+... +++++++++++| ++|+||||+|||||+++|++... .|.+.+++.+.
T Consensus 25 ~~~l~~l~~~~~~~~----~~~~~~~~~~~g--~ll~G~~G~GKTtl~~~i~~~~~-----~~~i~~~~~~~~~~~~~~~ 93 (254)
T 1ixz_A 25 KEELKEIVEFLKNPS----RFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR-----VPFITASGSDFVEMFVGVG 93 (254)
T ss_dssp HHHHHHHHHHHHCHH----HHHHTTCCCCSE--EEEECCTTSSHHHHHHHHHHHTT-----CCEEEEEHHHHHHSCTTHH
T ss_pred HHHHHHHHHHHHCHH----HHHHcCCCCCCe--EEEECCCCCCHHHHHHHHHHHhC-----CCEEEeeHHHHHHHHhhHH
Confidence 356788888887655 899999999999 89999999999999999999873 57777665321
Q ss_pred CCeEEEEecCCCCCCcccCCcccChHHHHHhcCCCCCccHHHHHHHHHHhhcCCCccCCCCCCcCCCcchhhhhhccCce
Q 021362 149 PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHK 228 (313)
Q Consensus 149 ~~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~LSgG~kqRv~ia~al~~~ar 228 (313)
.+.+.+++|...... +.+.+.|++.......+...........+.+..+ ..+||||++||+.+ +.
T Consensus 94 ~~~i~~~~~~~~~~~-~~i~~~Deid~l~~~~~~~~~~~~~~~~~~~~~l-------l~~l~g~~~~~~~i-------~~ 158 (254)
T 1ixz_A 94 AARVRDLFETAKRHA-PCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQL-------LVEMDGFEKDTAIV-------VM 158 (254)
T ss_dssp HHHHHHHHHHHTTSS-SEEEEEETHHHHHC---------CHHHHHHHHHH-------HHHHHTCCTTCCEE-------EE
T ss_pred HHHHHHHHHHHHhcC-CeEEEehhhhhhhcccCccccccchHHHHHHHHH-------HHHHhCCCCCCCEE-------EE
Confidence 112345566532111 2367788885433221110000011111222211 12578999999999 55
Q ss_pred EEEEcCCccccCh
Q 021362 229 VVIVDGNYLFLDG 241 (313)
Q Consensus 229 ~Li~d~~~lllDE 241 (313)
++..+|.. +|+
T Consensus 159 a~t~~p~~--ld~ 169 (254)
T 1ixz_A 159 AATNRPDI--LDP 169 (254)
T ss_dssp EEESCGGG--SCG
T ss_pred EccCCchh--CCH
Confidence 66666544 565
|
| >2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A* | Back alignment and structure |
|---|
Probab=99.08 E-value=2.4e-10 Score=98.51 Aligned_cols=136 Identities=15% Similarity=0.278 Sum_probs=78.5
Q ss_pred cccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCCCCeEEEEecCCCCCCcccCCcccChHHHHHhcC
Q 021362 102 SNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRG 181 (313)
Q Consensus 102 l~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~~~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~ 181 (313)
-++++|.+++|+|++|||||||++.|++.+. .+.++++|++......++..+. ......
T Consensus 16 ~~~~~~~~i~i~G~~GsGKSTl~~~L~~~~~------------------~~~~i~~D~~~~~~~~~~~~~~---~~~~~~ 74 (207)
T 2qt1_A 16 PRGSKTFIIGISGVTNSGKTTLAKNLQKHLP------------------NCSVISQDDFFKPESEIETDKN---GFLQYD 74 (207)
T ss_dssp CCSCCCEEEEEEESTTSSHHHHHHHHHTTST------------------TEEEEEGGGGBCCGGGSCBCTT---SCBCCS
T ss_pred ccCCCCeEEEEECCCCCCHHHHHHHHHHhcC------------------CcEEEeCCccccCHhHhhcccc---CCChhH
Confidence 3678999999999999999999999999762 2678999976543211111000 000001
Q ss_pred CCCCccHHHHHHHHHHhhcCCCccCCCCCCcCCCcchhhhhhccCceEEEEcCCccccChhhHHHHHhhccceEEEEcCh
Q 021362 182 APWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEKWFIEVDL 261 (313)
Q Consensus 182 ~~~~~~~~~~~~~l~~l~~~~~~~~~~LSgG~kqRv~ia~al~~~ar~Li~d~~~lllDE~~~~~l~~l~~~~i~vtHd~ 261 (313)
.....+...+.+.+..+-.. ...+.++.|+++ ..+.++++.|+.++.-++. +.+..+..++++-+.
T Consensus 75 ~~~~~~~~~l~~~i~~~l~~--~~~~~~~~~~~~--------~~~~~~vi~eg~~~~~~~~----~~~~~d~~i~l~~~~ 140 (207)
T 2qt1_A 75 VLEALNMEKMMSAISCWMES--ARHSVVSTDQES--------AEEIPILIIEGFLLFNYKP----LDTIWNRSYFLTIPY 140 (207)
T ss_dssp SGGGBCHHHHHHHHHHHHHH--HTTSSCCC-------------CCCCEEEEECTTCTTCGG----GTTTCSEEEEEECCH
T ss_pred HHHHhHHHHHHHHHHHHHhC--CCCCCcCCCeee--------cCCCCEEEEeehHHcCcHH----HHHhcCeeEEEECCH
Confidence 11112333333333222110 012356666654 2246789999977665543 335667788999999
Q ss_pred HHHHHHHhhcc
Q 021362 262 DTAMQRVLKRH 272 (313)
Q Consensus 262 ~~~~~rv~gri 272 (313)
+....|+..|.
T Consensus 141 ~~~~~R~~~R~ 151 (207)
T 2qt1_A 141 EECKRRRSTRV 151 (207)
T ss_dssp HHHHHHHHHSC
T ss_pred HHHHHHHHHcC
Confidence 98888776553
|
| >4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis} | Back alignment and structure |
|---|
Probab=99.08 E-value=3.2e-11 Score=107.88 Aligned_cols=174 Identities=17% Similarity=0.174 Sum_probs=89.6
Q ss_pred CCCcEEEEECCCCCcHHHHHHHHH---HHhcccCCCCceee--------cCCCCCC---------CeEEEEecCCCC---
Q 021362 105 NVKHIVGLAGPPGAGKSTLAAEVV---RRINKIWPQKASSF--------DSQVKPP---------DVATVLPMDGFH--- 161 (313)
Q Consensus 105 ~~Geiv~l~GpNGsGKSTLlk~l~---gl~~~~~p~~G~i~--------~~g~~~~---------~~i~~v~qd~~~--- 161 (313)
++|++++|+|||||||||++++|+ |+.. +++|.++ .+|.+.. ..+++++|....
T Consensus 25 ~~g~~I~I~G~~GsGKSTl~k~La~~Lg~~~---~d~g~i~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (252)
T 4e22_A 25 AIAPVITVDGPSGAGKGTLCKALAESLNWRL---LDSGAIYRVLALAALHHQVDISTEEALVPLAAHLDVRFVSQNGQLQ 101 (252)
T ss_dssp TTSCEEEEECCTTSSHHHHHHHHHHHTTCEE---EEHHHHHHHHHHHHHHTTCCSSSSTTHHHHHHTCCEEEEEETTEEE
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHhcCCCc---CCCCceehHhHHHHHHcCCCcccHHHHHHHHHcCCEEEecCCCCce
Confidence 789999999999999999999999 8777 9999998 7776542 136677764321
Q ss_pred CCcccCCcccChHHHHHhcCCCCCccHHHHHHHHHHhhcCCCccCCCCCCcCCCcchhhhhhccCceEEEEcCC---ccc
Q 021362 162 LYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGN---YLF 238 (313)
Q Consensus 162 ~~~~~ltv~e~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~LSgG~kqRv~ia~al~~~ar~Li~d~~---~ll 238 (313)
......++.+++.................+.+.+..+.. .++.+ .. ++.++. .++
T Consensus 102 ~~l~~~~v~~~i~~~~v~~~~s~~~~~~~vr~~l~~~~~-------~~a~~--------------~~-~V~~gr~~~~~v 159 (252)
T 4e22_A 102 VILEGEDVSNEIRTETVGNTASQAAAFPRVREALLRRQR-------AFREA--------------PG-LIADGRDMGTIV 159 (252)
T ss_dssp EEETTEECTTGGGSHHHHHHHHHHTTSHHHHHHHHHHHH-------TTCCS--------------SC-EEEEESSCCCCC
T ss_pred EEECCeehhHHHHHHHHHHHHHHhcccHHHHHHHHHHHH-------HHhhC--------------CC-EEEEeceeceee
Confidence 001123455554321110000000011222333322210 11111 22 333332 223
Q ss_pred cChhhHHHHHhhccceEEEEcChHHHHHHHhhccccc--CCchHHHHHHHHhcCCchhH-HhhhcccCcc-EEeecCC
Q 021362 239 LDGGVWKDVSSMFDEKWFIEVDLDTAMQRVLKRHIST--GKPPDVAKWRIEYNDRPNAE-LIMKSKKNAD-LVIKSID 312 (313)
Q Consensus 239 lDE~~~~~l~~l~~~~i~vtHd~~~~~~rv~griv~~--G~~~ev~~~~~~~~~~~~~~-~i~~~~~~ad-~ii~~~~ 312 (313)
+++ .+..||++-++++..+|+..+.... +...+-+...+..++..... .+.|.+..+| ++|++..
T Consensus 160 ~~~---------~~~~ifl~A~~e~r~~R~~~~l~~~~~~~~~~~~~~~i~~rd~~~~~r~~~pl~~~~d~~~Idts~ 228 (252)
T 4e22_A 160 FPD---------APVKIFLDASSQERAHRRMLQLQERGFNVNFERLLAEIQERDNRDRNRSVAPLVPAADALVLDSTS 228 (252)
T ss_dssp STT---------CSEEEEEECCHHHHHHHHHHHHHHHTCCCCHHHHHHHHC------------CCCCCTTEEEEECSS
T ss_pred cCC---------CCEEEEEECCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhhhccccchhccCCeEEEECcC
Confidence 321 3446899999999888776433322 22334444455555555544 6777788888 8888753
|
| >1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=99.07 E-value=9.3e-12 Score=109.87 Aligned_cols=57 Identities=19% Similarity=0.214 Sum_probs=42.4
Q ss_pred EEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCC
Q 021362 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP 148 (313)
Q Consensus 77 ~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~ 148 (313)
.|+++|+...|+. +|++.+ ++++|+||||||||||+++|+|++. |++|.|.++|.+.
T Consensus 9 ~l~l~~~~~~~~~-----------~~~~~~-~~~~i~GpnGsGKSTll~~i~g~~~---~~~G~i~~~g~~~ 65 (227)
T 1qhl_A 9 SLTLINWNGFFAR-----------TFDLDE-LVTTLSGGNGAGKSTTMAAFVTALI---PDLTLLHFRNTTE 65 (227)
T ss_dssp EEEEEEETTEEEE-----------EECHHH-HHHHHHSCCSHHHHHHHHHHHHHHS---CCTTTC-------
T ss_pred EEEEEeeecccCC-----------EEEEcC-cEEEEECCCCCCHHHHHHHHhcccc---cCCCeEEECCEEc
Confidence 5888898776642 234445 8999999999999999999999999 9999999988653
|
| >2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A | Back alignment and structure |
|---|
Probab=99.03 E-value=3.3e-11 Score=124.97 Aligned_cols=116 Identities=17% Similarity=0.118 Sum_probs=86.1
Q ss_pred cCCcccChHHHHHhcCCCCC----------ccHHHHHHHHHHhhcC---CCccCCCCCCcCCCcchhhhhhccCc--eEE
Q 021362 166 QLDAMEDPKEAHARRGAPWT----------FNPLLLLNCLKNLRNQ---GSVYAPSFDHGVGDPVEDDILVGLQH--KVV 230 (313)
Q Consensus 166 ~ltv~e~~~~~~~~~~~~~~----------~~~~~~~~~l~~l~~~---~~~~~~~LSgG~kqRv~ia~al~~~a--r~L 230 (313)
.+||.|++.|. ...+.+.. +..+++ +.|..+|.. .++.+.+|||||+|||+||.++..++ ++|
T Consensus 451 ~ltV~e~~~f~-e~l~l~~~~~~i~~~~~~ei~~Rl-~~L~~vGL~~l~ldR~~~tLSGGEkQRV~LA~aL~~~~~~~ll 528 (972)
T 2r6f_A 451 AMSVTEALAFF-DGLELTEKEAQIARLILREIRDRL-GFLQNVGLDYLTLSRSAGTLSGGEAQRIRLATQIGSRLTGVLY 528 (972)
T ss_dssp TSBHHHHHHHH-HHCCCCHHHHHHSHHHHHHHHHHH-HHHHHHTCTTSBSSSBGGGCCHHHHHHHHHHHHHTTCCCSCEE
T ss_pred hCCHHHHHHHH-HhcCCCHHHHHHHHHHHHHHHHHH-HHhhhCCCCccccCCccccCCHHHHHHHHHHHHHhhCCCCCEE
Confidence 37888888884 44444431 112233 346777743 57788899999999999999999874 899
Q ss_pred EEcCCccccCh----hhHHHHHhhccc---eEEEEcChHHHHH--HHh----------hcccccCCchHHHH
Q 021362 231 IVDGNYLFLDG----GVWKDVSSMFDE---KWFIEVDLDTAMQ--RVL----------KRHISTGKPPDVAK 283 (313)
Q Consensus 231 i~d~~~lllDE----~~~~~l~~l~~~---~i~vtHd~~~~~~--rv~----------griv~~G~~~ev~~ 283 (313)
++|+|...||+ .+++.|+++.+. +|+|+||++++.. |++ |++++.|+++++..
T Consensus 529 ILDEPTagLdp~~~~~L~~~L~~Lr~~G~TVIvVeHdl~~i~~ADrIi~LgpgaG~~gG~iv~~G~~~e~~~ 600 (972)
T 2r6f_A 529 VLDEPSIGLHQRDNDRLIATLKSMRDLGNTLIVVEHDEDTMLAADYLIDIGPGAGIHGGEVVAAGTPEEVMN 600 (972)
T ss_dssp EEECTTTTCCGGGHHHHHHHHHHHHTTTCEEEEECCCHHHHHSCSEEEEECSSSGGGCCSEEEEECTTTTTT
T ss_pred EEeCcccCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhCCEEEEeCCCccCCCCEEEEecCHHHHHh
Confidence 99999999998 566666666543 5799999998754 444 68889999888754
|
| >1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A* | Back alignment and structure |
|---|
Probab=99.02 E-value=2.6e-09 Score=95.08 Aligned_cols=185 Identities=24% Similarity=0.361 Sum_probs=108.6
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCCCCeEEEEecCCCCCCcccCCcccChHHHHH---hcCC
Q 021362 106 VKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHA---RRGA 182 (313)
Q Consensus 106 ~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~~~~i~~v~qd~~~~~~~~ltv~e~~~~~~~---~~~~ 182 (313)
+.-+++|.|+.||||||+.+.|+..+.. + .++ .....+.++..|.++.. +. ...+..... .+..
T Consensus 21 ~~~iI~I~G~~GSGKST~a~~L~~~lg~--~-----~~d--~~~~~~~~i~~D~~~~~---~~-~~~~~~~~~g~~~f~~ 87 (252)
T 1uj2_A 21 EPFLIGVSGGTASGKSSVCAKIVQLLGQ--N-----EVD--YRQKQVVILSQDSFYRV---LT-SEQKAKALKGQFNFDH 87 (252)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHTTG--G-----GSC--GGGCSEEEEEGGGGBCC---CC-HHHHHHHHTTCSCTTS
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHhhh--h-----ccc--ccCCceEEEecCccccc---cC-hhhhhhhccCCCCCCC
Confidence 3458999999999999999999986641 1 000 01233556888865421 11 111111110 1112
Q ss_pred CCCccHHHHHHHHHHhhcCCCccCCCCCCcCCCcchhhhhhccCceEEEEcCCccccChhhHHHHHhhccceEEEEcChH
Q 021362 183 PWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEKWFIEVDLD 262 (313)
Q Consensus 183 ~~~~~~~~~~~~l~~l~~~~~~~~~~LSgG~kqRv~ia~al~~~ar~Li~d~~~lllDE~~~~~l~~l~~~~i~vtHd~~ 262 (313)
+..++.+.+.+.|+.+........+.|+.....++.-.. ......+++.|+.+++.++ .+.+.++..|+++.+.+
T Consensus 88 ~~~~d~~~l~~~L~~l~~~~~v~~~~~d~~~~~~~~~~~-~~~~~~~vIveG~~~~~~~----~~~~~~d~vi~l~~~~e 162 (252)
T 1uj2_A 88 PDAFDNELILKTLKEITEGKTVQIPVYDFVSHSRKEETV-TVYPADVVLFEGILAFYSQ----EVRDLFQMKLFVDTDAD 162 (252)
T ss_dssp GGGBCHHHHHHHHHHHHTTCCEEEEEEETTTTEEEEEEE-EECCCSEEEEECTTTTSSH----HHHHHCSEEEEEECCHH
T ss_pred cchhhHHHHHHHHHHHHcCCeeecCccccccccCCCcee-eeCCCcEEEEeeeccccCH----HHHHhcCeeEEEeCCHH
Confidence 344555666677777654333333333222222221000 0123568999998776664 34556778899999999
Q ss_pred HHHHHHhhcc-cccCCchHHHHHHHHhcCCchhH-HhhhcccCccEEe
Q 021362 263 TAMQRVLKRH-ISTGKPPDVAKWRIEYNDRPNAE-LIMKSKKNADLVI 308 (313)
Q Consensus 263 ~~~~rv~gri-v~~G~~~ev~~~~~~~~~~~~~~-~i~~~~~~ad~ii 308 (313)
...+|+..|. ...|...+.+..+|...+.+..+ ++.+.+..||++|
T Consensus 163 ~~~~R~~~R~~~~rg~~~e~i~~~~~~~~~~~~~~~i~~~~~~ad~vI 210 (252)
T 1uj2_A 163 TRLSRRVLRDISERGRDLEQILSQYITFVKPAFEEFCLPTKKYADVII 210 (252)
T ss_dssp HHHHHHHHHHHHHSCCCHHHHHHHHHHTHHHHHHHHTGGGGGGCSEEE
T ss_pred HHHHHHHHHHHhhhCCCHHHHHHHHHHhccHHHHHHhhhhhhcCcEEE
Confidence 9988877553 34465556555667666655544 7778888999998
|
| >3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=99.01 E-value=1.9e-09 Score=92.47 Aligned_cols=38 Identities=37% Similarity=0.407 Sum_probs=26.0
Q ss_pred ccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhc
Q 021362 95 LPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 95 ~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~ 132 (313)
.+++|+||++.+|++++|+|++||||||+.+.|++.+.
T Consensus 13 ~~~~~~~~~~~~~~~i~l~G~~GsGKsTl~~~La~~l~ 50 (199)
T 3vaa_A 13 LGTENLYFQSNAMVRIFLTGYMGAGKTTLGKAFARKLN 50 (199)
T ss_dssp -----------CCCEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CCCCceeEecCCCCEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 38999999999999999999999999999999999885
|
| >3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X* | Back alignment and structure |
|---|
Probab=99.00 E-value=2.8e-10 Score=95.93 Aligned_cols=114 Identities=10% Similarity=0.012 Sum_probs=68.4
Q ss_pred cccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecC---------CC-----CCCCeEEEEecCCCCCC
Q 021362 98 SALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDS---------QV-----KPPDVATVLPMDGFHLY 163 (313)
Q Consensus 98 ~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~---------g~-----~~~~~i~~v~qd~~~~~ 163 (313)
+++++++.+| +++|+||||||||||+++|.+++. +..|..... |. .....+.+++|++....
T Consensus 18 ~~~~~~~~~g-~~~i~G~NGsGKStll~ai~~~l~---~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~v~~~f~~~~~~~ 93 (182)
T 3kta_A 18 KKVVIPFSKG-FTAIVGANGSGKSNIGDAILFVLG---GLSAKAMRASRISDLIFAGSKNEPPAKYAEVAIYFNNEDRGF 93 (182)
T ss_dssp SCEEEECCSS-EEEEEECTTSSHHHHHHHHHHHTT---CCCTGGGTCSSGGGGBCCCC----CCSCEEEEEEEECTTCCS
T ss_pred ccEEEecCCC-cEEEECCCCCCHHHHHHHHHHHHc---CCcccccccccchheeecccccCCCCceEEEEEEEeCCCccc
Confidence 6788899999 999999999999999999999997 776643222 21 12235788888754322
Q ss_pred cc---cCCcccChHHH----HHhcCCCCCccHHHHHHHHHHhhcCCCccCCCCCCcCCCcch
Q 021362 164 LS---QLDAMEDPKEA----HARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVE 218 (313)
Q Consensus 164 ~~---~ltv~e~~~~~----~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~LSgG~kqRv~ 218 (313)
++ .+++...+... ....+ .......+.++++.++...+.. .-++.|+.+++.
T Consensus 94 ~~~~~~~~i~r~~~~~~~~~~~i~g--~~~~~~~~~~~l~~~~l~~~~~-~~~~qg~~~~l~ 152 (182)
T 3kta_A 94 PIDEDEVVIRRRVYPDGRSSYWLNG--RRATRSEILDILTAAMISPDGY-NIVLQGDITKFI 152 (182)
T ss_dssp SSSSSEEEEEEEECTTSCEEEEETT--EEECHHHHHHHHHHTTCCTTCT-TEECTTCTTHHH
T ss_pred ccCCcEEEEEEEEEeCCcEEEEECC--eEcCHHHHHHHHHHcCCCCCCC-EEEEcccHHHHH
Confidence 11 12332221100 00111 1123456777888777443322 346777776654
|
| >2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A* | Back alignment and structure |
|---|
Probab=99.00 E-value=7.7e-10 Score=95.52 Aligned_cols=130 Identities=15% Similarity=0.057 Sum_probs=78.8
Q ss_pred ccccccc-ccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCCCCeEEEEecCCCCCCcccCCcccChH
Q 021362 96 PTSALAS-NVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPK 174 (313)
Q Consensus 96 ~L~~vsl-~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~~~~i~~v~qd~~~~~~~~ltv~e~~~ 174 (313)
.|+.+.. .+++|++++|+||||||||||++.|++ . +. ..+.|+..+.. .+. +.+.
T Consensus 8 ~LD~~l~Ggi~~G~~~~i~G~~GsGKTtl~~~l~~--~---~~------------~~v~~i~~~~~------~~~-~~~~ 63 (220)
T 2cvh_A 8 SLDSLLGGGFAPGVLTQVYGPYASGKTTLALQTGL--L---SG------------KKVAYVDTEGG------FSP-ERLV 63 (220)
T ss_dssp HHHHHTTSSBCTTSEEEEECSTTSSHHHHHHHHHH--H---HC------------SEEEEEESSCC------CCH-HHHH
T ss_pred HHHHhhcCCCcCCEEEEEECCCCCCHHHHHHHHHH--H---cC------------CcEEEEECCCC------CCH-HHHH
Confidence 6777765 799999999999999999999999999 3 22 23444544321 111 1111
Q ss_pred HHHHhcCCCCCccHHHHHHHHHHhhcCCCccCCCCCCcCC--CcchhhhhhccC-ceEEEEcCCccccCh----------
Q 021362 175 EAHARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVG--DPVEDDILVGLQ-HKVVIVDGNYLFLDG---------- 241 (313)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~LSgG~k--qRv~ia~al~~~-ar~Li~d~~~lllDE---------- 241 (313)
......+. +.+ ++++.+ .+..++++++ |+++.+++++.. ++++++|++..++|.
T Consensus 64 ~~~~~~~~----~~~---~~~~~~------~~~~~~~~~~~~~~~~~~~~l~~~~~~lliiD~~~~~l~~~~~~~~~~~~ 130 (220)
T 2cvh_A 64 QMAETRGL----NPE---EALSRF------ILFTPSDFKEQRRVIGSLKKTVDSNFALVVVDSITAHYRAEENRSGLIAE 130 (220)
T ss_dssp HHHHTTTC----CHH---HHHHHE------EEECCTTTSHHHHHHHHHHHHCCTTEEEEEEECCCCCTTGGGGSSTTHHH
T ss_pred HHHHhcCC----ChH---HHhhcE------EEEecCCHHHHHHHHHHHHHHhhcCCCEEEEcCcHHHhhhcCchHHHHHH
Confidence 11111111 111 222322 2335566664 466667777775 999999999999874
Q ss_pred --hhHHHHHhhccc----eEEEEcChH
Q 021362 242 --GVWKDVSSMFDE----KWFIEVDLD 262 (313)
Q Consensus 242 --~~~~~l~~l~~~----~i~vtHd~~ 262 (313)
.+++.|+++.++ .++++|...
T Consensus 131 ~~~~~~~L~~l~~~~~~~vi~~~h~~~ 157 (220)
T 2cvh_A 131 LSRQLQVLLWIARKHNIPVIVINQVHF 157 (220)
T ss_dssp HHHHHHHHHHHHHHHTCCEEEEECSSS
T ss_pred HHHHHHHHHHHHHHcCCEEEEEeeEEE
Confidence 133335555432 468888765
|
| >3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.98 E-value=8e-11 Score=105.37 Aligned_cols=53 Identities=19% Similarity=0.289 Sum_probs=37.0
Q ss_pred cEEEEccc-eEEc-cccccccccccccccccCC---CcEEEEECCCCCcHHHHHHHHHHHhc
Q 021362 76 PVVEARCM-DEVY-DALAQRLLPTSALASNVNV---KHIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 76 ~~l~~~~l-~~~y-~~~~~~~~~L~~vsl~i~~---Geiv~l~GpNGsGKSTLlk~l~gl~~ 132 (313)
++|+++|+ ++.| ++.. +|+++||+|.+ |++++|+|++||||||++++|++.+.
T Consensus 16 ~~l~~~~~~~~~~~~~~~----~l~~~~~~i~~~l~g~~i~l~G~~GsGKSTl~~~La~~lg 73 (250)
T 3nwj_A 16 ALLETGSLLHSPFDEEQQ----ILKKKAEEVKPYLNGRSMYLVGMMGSGKTTVGKIMARSLG 73 (250)
T ss_dssp ----------------CH----HHHHHHHTTHHHHTTCCEEEECSTTSCHHHHHHHHHHHHT
T ss_pred CceEEcceeeEEecCcch----hhhhhhhhhhhhcCCCEEEEECCCCCCHHHHHHHHHHhcC
Confidence 47999999 9999 5555 99999999999 99999999999999999999999885
|
| >3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum} | Back alignment and structure |
|---|
Probab=98.97 E-value=1.5e-10 Score=101.73 Aligned_cols=37 Identities=27% Similarity=0.399 Sum_probs=22.9
Q ss_pred cccccccccCCCcEEEEECCCCCcHHHHHHHHH-HHhc
Q 021362 96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVV-RRIN 132 (313)
Q Consensus 96 ~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~-gl~~ 132 (313)
..+++||++++|++++|+||||||||||+++|+ |+++
T Consensus 16 ~~~~~sl~v~~G~ii~l~Gp~GsGKSTl~~~L~~~~~~ 53 (231)
T 3lnc_A 16 TQGPGSMLKSVGVILVLSSPSGCGKTTVANKLLEKQKN 53 (231)
T ss_dssp ------CCEECCCEEEEECSCC----CHHHHHHC----
T ss_pred ccCCCCcccCCCCEEEEECCCCCCHHHHHHHHHhcCCC
Confidence 578999999999999999999999999999999 9984
|
| >1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6 | Back alignment and structure |
|---|
Probab=98.92 E-value=2.4e-09 Score=97.72 Aligned_cols=188 Identities=13% Similarity=0.091 Sum_probs=103.3
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCCCCeEEEEecCCCCCC-cccCCcccChHHHHH----hc
Q 021362 106 VKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLY-LSQLDAMEDPKEAHA----RR 180 (313)
Q Consensus 106 ~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~~~~i~~v~qd~~~~~-~~~ltv~e~~~~~~~----~~ 180 (313)
++-++||.||+||||||+.+.|...+. . . ...+.++.+|.++.. ...++ ..+..... .+
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~~lg---~-~----------~~~~~vI~~D~~~r~~~~~~~--~~~~~~~~~g~~~~ 67 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQIFR---R-E----------GVKAVSIEGDAFHRFNRADMK--AELDRRYAAGDATF 67 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHHHHH---H-H----------TCCEEEEEGGGGBSCCHHHHH--HHHHHHHHHTCTTC
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHh---h-c----------CCCeeEeecchhhcCCHHHhh--hhhhhhhhccCcCc
Confidence 456899999999999999999998663 1 0 112567888876532 11000 00000000 11
Q ss_pred CC--CCCccHHHHHHHHHHhhcCCCccCCCCCC---------cCCCcchhhhhhccCceEEEEcCCccccChhhHHHHHh
Q 021362 181 GA--PWTFNPLLLLNCLKNLRNQGSVYAPSFDH---------GVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSS 249 (313)
Q Consensus 181 ~~--~~~~~~~~~~~~l~~l~~~~~~~~~~LSg---------G~kqRv~ia~al~~~ar~Li~d~~~lllDE~~~~~l~~ 249 (313)
.. +...+.+.+.+.+..+........+.|.. .....+.-...+.....+++.|+.++++.. ....+..
T Consensus 68 ~~fg~~~~d~~~l~~~l~~l~~~~~i~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~vvIvEG~~~~~~~-~~~~v~~ 146 (290)
T 1a7j_A 68 SHFSYEANELKELERVFREYGETGQGRTRTYVHDDAEAARTGVAPGNFTDWRDFDSDSHLLFYEGLHGAVVN-SEVNIAG 146 (290)
T ss_dssp STTSGGGBCHHHHHHHHHHHHHHSCCEECCCC------CCSSCCTTSCCCCEECCSSCSEEEEEESCTTCBC-SSCBCGG
T ss_pred CCCChhhhcHHHHHHHHHHHHcCCcccceeeccccccccccCCCCCccccccccCCCCCEEEEEeccccccc-chHhHHH
Confidence 11 33444555666666554222222222211 111111000112224678999998887320 0012445
Q ss_pred hccceEEEEcChHHHHHHHhhccc-ccCCchHHHHHHHHhcCCchhH-HhhhcccCccE------EeecC
Q 021362 250 MFDEKWFIEVDLDTAMQRVLKRHI-STGKPPDVAKWRIEYNDRPNAE-LIMKSKKNADL------VIKSI 311 (313)
Q Consensus 250 l~~~~i~vtHd~~~~~~rv~griv-~~G~~~ev~~~~~~~~~~~~~~-~i~~~~~~ad~------ii~~~ 311 (313)
.++..|||+-+.++...|.+.|.+ ..|...+-+.+++... .+..+ |+.|.+..||+ +|++.
T Consensus 147 ~~D~~IfV~a~~~~rl~Rrl~Rd~~~RG~s~e~v~~~i~~r-~~~~~r~i~p~~~~AD~~~~~~~vIDns 215 (290)
T 1a7j_A 147 LADLKIGVVPVINLEWIQKIHRDRATRGYTTEAVTDVILRR-MHAYVHCIVPQFSQTDINFQRVPVVDTS 215 (290)
T ss_dssp GCSEEEEEEECHHHHHHHHHHHTSSSCCSCCCCHHHHHHHH-HHHHHHHTGGGGGTCSEEEEEEESSCCS
T ss_pred hCCEEEEEECCHHHHHHHHhhhhhhhcCCChHHHHHHHHHh-CccHHHhhhhhhccCCEeeccCceecCC
Confidence 677889999999998887776544 4575544444455555 66655 99999999999 66654
|
| >1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10 | Back alignment and structure |
|---|
Probab=98.90 E-value=1.2e-09 Score=100.53 Aligned_cols=111 Identities=14% Similarity=0.098 Sum_probs=73.2
Q ss_pred ccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCCCCeEEEEecCCCCCCcccCCcccChHHHHH
Q 021362 99 ALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHA 178 (313)
Q Consensus 99 ~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~~~~i~~v~qd~~~~~~~~ltv~e~~~~~~~ 178 (313)
.++++..+|++++|+|||||||||+++.|++.+. ++.|+|.+ +..|.+. . .
T Consensus 96 ~~~~~~~~~~vi~ivG~~GsGKTTl~~~LA~~l~---~~g~kV~l-----------v~~D~~r--~---~---------- 146 (306)
T 1vma_A 96 KLNVPPEPPFVIMVVGVNGTGKTTSCGKLAKMFV---DEGKSVVL-----------AAADTFR--A---A---------- 146 (306)
T ss_dssp CCCCCSSSCEEEEEECCTTSSHHHHHHHHHHHHH---HTTCCEEE-----------EEECTTC--H---H----------
T ss_pred CCcccCCCCeEEEEEcCCCChHHHHHHHHHHHHH---hcCCEEEE-----------Ecccccc--H---H----------
Confidence 3566778999999999999999999999999998 76665543 4444220 0 0
Q ss_pred hcCCCCCccHHHHHHHHHHhhcCCCccCCCCCCcCCCcc---hhhhhhccCceEEEEcCCccc-cChhhHHHHHh
Q 021362 179 RRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPV---EDDILVGLQHKVVIVDGNYLF-LDGGVWKDVSS 249 (313)
Q Consensus 179 ~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~LSgG~kqRv---~ia~al~~~ar~Li~d~~~ll-lDE~~~~~l~~ 249 (313)
..+.+..+++.++.. .++.+|+|+.+++ +++.++..++++++.|.+-.+ .++.+++++.+
T Consensus 147 --------a~eqL~~~~~~~gl~---~~~~~s~~~~~~v~~~al~~a~~~~~dvvIiDtpg~~~~~~~l~~eL~~ 210 (306)
T 1vma_A 147 --------AIEQLKIWGERVGAT---VISHSEGADPAAVAFDAVAHALARNKDVVIIDTAGRLHTKKNLMEELRK 210 (306)
T ss_dssp --------HHHHHHHHHHHHTCE---EECCSTTCCHHHHHHHHHHHHHHTTCSEEEEEECCCCSCHHHHHHHHHH
T ss_pred --------HHHHHHHHHHHcCCc---EEecCCccCHHHHHHHHHHHHHhcCCCEEEEECCCchhhHHHHHHHHHH
Confidence 012233344444421 2457789999998 788888888888888866432 23344444433
|
| >1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1 | Back alignment and structure |
|---|
Probab=98.82 E-value=9.6e-11 Score=112.17 Aligned_cols=117 Identities=18% Similarity=0.135 Sum_probs=72.7
Q ss_pred ccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCC---CCCeEEEEecCCCCCCcccCCcccCh
Q 021362 97 TSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK---PPDVATVLPMDGFHLYLSQLDAMEDP 173 (313)
Q Consensus 97 L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~---~~~~i~~v~qd~~~~~~~~ltv~e~~ 173 (313)
-++++|+++.|++++|+|+||||||||+++|+|.. | .+.+.+ ....++++.+++.. .++++|..
T Consensus 147 ~~~i~lelk~g~~VgLVG~~gAGKSTLL~~Lsg~~----~-----~i~~~~ftTl~p~~G~V~~~~~~----~~~l~Dtp 213 (416)
T 1udx_A 147 KRRLRLELMLIADVGLVGYPNAGKSSLLAAMTRAH----P-----KIAPYPFTTLSPNLGVVEVSEEE----RFTLADIP 213 (416)
T ss_dssp EEEEEEEECCSCSEEEECCGGGCHHHHHHHHCSSC----C-----EECCCTTCSSCCEEEEEECSSSC----EEEEEECC
T ss_pred EeeeeeEEcCCCEEEEECCCCCcHHHHHHHHHcCC----c-----cccCcccceecceeeEEEecCcc----eEEEEecc
Confidence 36899999999999999999999999999999985 3 111211 22346667665410 12333332
Q ss_pred HHH---HHhcCCCCCccHHHHHHHHHHh-------hcCCCccCCCCCCcCCCcchhhhhhccCceEEEE
Q 021362 174 KEA---HARRGAPWTFNPLLLLNCLKNL-------RNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIV 232 (313)
Q Consensus 174 ~~~---~~~~~~~~~~~~~~~~~~l~~l-------~~~~~~~~~~LSgG~kqRv~ia~al~~~ar~Li~ 232 (313)
-+. ....+.. ....+.+++. +.. +..+.+||+|++|++.++++++..+.+|++
T Consensus 214 Gli~~a~~~~~L~-----~~fl~~~era~~lL~vvDls-~~~~~~ls~g~~el~~la~aL~~~P~ILVl 276 (416)
T 1udx_A 214 GIIEGASEGKGLG-----LEFLRHIARTRVLLYVLDAA-DEPLKTLETLRKEVGAYDPALLRRPSLVAL 276 (416)
T ss_dssp CCCCCGGGSCCSC-----HHHHHHHTSSSEEEEEEETT-SCHHHHHHHHHHHHHHHCHHHHHSCEEEEE
T ss_pred ccccchhhhhhhh-----HHHHHHHHHHHhhhEEeCCc-cCCHHHHHHHHHHHHHHhHHhhcCCEEEEE
Confidence 110 0001111 1111111221 122 345558999999999999999999999987
|
| >3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A* | Back alignment and structure |
|---|
Probab=98.82 E-value=7.8e-10 Score=94.98 Aligned_cols=53 Identities=19% Similarity=0.134 Sum_probs=40.3
Q ss_pred ccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCcee
Q 021362 81 RCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS 141 (313)
Q Consensus 81 ~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i 141 (313)
+|++..++... +.+.+++..++|++++|+||||||||||+++|++.+. ..|.+
T Consensus 3 ~~~~~~~~~~~----~~~~~~~~~~~g~~i~l~G~sGsGKSTl~~~La~~l~----~~G~~ 55 (200)
T 3uie_A 3 TNIKWHECSVE----KVDRQRLLDQKGCVIWVTGLSGSGKSTLACALNQMLY----QKGKL 55 (200)
T ss_dssp -------CCCC----HHHHHHHHTSCCEEEEEECSTTSSHHHHHHHHHHHHH----HTTCC
T ss_pred CCCcccccccC----HHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHHH----hcCce
Confidence 46677776665 7888999999999999999999999999999999984 45655
|
| >3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus} | Back alignment and structure |
|---|
Probab=98.81 E-value=8.4e-10 Score=110.55 Aligned_cols=166 Identities=14% Similarity=0.120 Sum_probs=94.9
Q ss_pred EEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCC-ceeecCCCCC---CCeEE
Q 021362 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQK-ASSFDSQVKP---PDVAT 153 (313)
Q Consensus 78 l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~-G~i~~~g~~~---~~~i~ 153 (313)
+.-++++..||... +++++++.+..|+.++|+||||+|||||+++|+++++ +.. |.+.+.+... ...+.
T Consensus 35 ~rp~~l~~i~G~~~----~l~~l~~~i~~g~~vll~Gp~GtGKTtlar~ia~~l~---~~~~~~~~~~~~~~~~~~p~i~ 107 (604)
T 3k1j_A 35 VPEKLIDQVIGQEH----AVEVIKTAANQKRHVLLIGEPGTGKSMLGQAMAELLP---TETLEDILVFPNPEDENMPRIK 107 (604)
T ss_dssp CCSSHHHHCCSCHH----HHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHTSC---CSSCEEEEEECCTTCTTSCEEE
T ss_pred ccccccceEECchh----hHhhccccccCCCEEEEEeCCCCCHHHHHHHHhccCC---cccCCeEEEeCCcccccCCcEE
Confidence 33466777788776 9999999999999999999999999999999999998 766 6676655432 23466
Q ss_pred EEecCCC--------------------CCCcccCCcccChHHHHHhcCCCCCccHHHHHHHHHHhhc--CCCccCCCCCC
Q 021362 154 VLPMDGF--------------------HLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDH 211 (313)
Q Consensus 154 ~v~qd~~--------------------~~~~~~ltv~e~~~~~~~~~~~~~~~~~~~~~~~l~~l~~--~~~~~~~~LSg 211 (313)
++++... .+....+++.+|+....... .+............+.++. ........+++
T Consensus 108 ~~p~g~~~~~~e~~~~~~~~~~~~r~~~~~~~~~~~~~nl~v~~~~~-~~~~~v~~~~~~~~~L~G~~~~~~~~~g~~~~ 186 (604)
T 3k1j_A 108 TVPACQGRRIVEKYREKAKSQESVKSSNMRLKSTVLVPKLLVDNCGR-TKAPFIDATGAHAGALLGDVRHDPFQSGGLGT 186 (604)
T ss_dssp EEETTHHHHHHHHHHHHHHHHTCC-----------CCCEEEECCTTC-SSCCEEECTTCCHHHHHCEECCCCC----CCC
T ss_pred EEecchHHHHHHHHHHhhccchhhhhhcccccccccccceeeccccC-CCCCEEEcCCCCHHhcCceEEechhhcCCccc
Confidence 6665420 01111234444442210000 0000000000111223341 12223357999
Q ss_pred cCCCcchhhhhhccCceEEEEcCCccccChhhHHHHHhhcc
Q 021362 212 GVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFD 252 (313)
Q Consensus 212 G~kqRv~ia~al~~~ar~Li~d~~~lllDE~~~~~l~~l~~ 252 (313)
|++|++........+..+|++|+.-. |++..+..|.+..+
T Consensus 187 g~~~~i~~g~~~~a~~gvL~LDEi~~-l~~~~q~~Ll~~Le 226 (604)
T 3k1j_A 187 PAHERVEPGMIHRAHKGVLFIDEIAT-LSLKMQQSLLTAMQ 226 (604)
T ss_dssp CGGGGEECCHHHHTTTSEEEETTGGG-SCHHHHHHHHHHHH
T ss_pred cccccccCceeeecCCCEEEEechhh-CCHHHHHHHHHHHH
Confidence 99999888666665566666665444 35556666655543
|
| >2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B} | Back alignment and structure |
|---|
Probab=98.80 E-value=1.5e-08 Score=83.36 Aligned_cols=32 Identities=25% Similarity=0.179 Sum_probs=29.3
Q ss_pred cccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhc
Q 021362 96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 96 ~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~ 132 (313)
+|+++ +|+.++|+||||+|||||+++|++.+.
T Consensus 30 ~l~~~-----~g~~~~l~G~~G~GKTtL~~~i~~~~~ 61 (149)
T 2kjq_A 30 VLRHK-----HGQFIYVWGEEGAGKSHLLQAWVAQAL 61 (149)
T ss_dssp HCCCC-----CCSEEEEESSSTTTTCHHHHHHHHHHH
T ss_pred HHHhc-----CCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 56665 899999999999999999999999996
|
| >1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=98.79 E-value=9.8e-09 Score=95.24 Aligned_cols=127 Identities=14% Similarity=0.110 Sum_probs=63.9
Q ss_pred EEEEECCCCCcHHHHHHHHHH-HhcccCCCCceeecCCCCCC------CeEEEEecCCCCCCcccCCcccChHHHHHhcC
Q 021362 109 IVGLAGPPGAGKSTLAAEVVR-RINKIWPQKASSFDSQVKPP------DVATVLPMDGFHLYLSQLDAMEDPKEAHARRG 181 (313)
Q Consensus 109 iv~l~GpNGsGKSTLlk~l~g-l~~~~~p~~G~i~~~g~~~~------~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~ 181 (313)
.+.|.||||+|||||+++|++ ++. |+.|.+.++|.+.. ..++++++..+.. +...+ .+
T Consensus 38 ~~ll~Gp~G~GKTtl~~~la~~l~~---~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~--------~~ 102 (354)
T 1sxj_E 38 HLLLYGPNGTGKKTRCMALLESIFG---PGVYRLKIDVRQFVTASNRKLELNVVSSPYHLE----ITPSD--------MG 102 (354)
T ss_dssp CEEEECSTTSSHHHHHHTHHHHHSC---TTCCC------------------CCEECSSEEE----ECCC-----------
T ss_pred eEEEECCCCCCHHHHHHHHHHHHcC---CCCCeEEecceeecccccccceeeeecccceEE----ecHhh--------cC
Confidence 389999999999999999999 777 89999998875432 2355566553211 11100 00
Q ss_pred CCCCccHHHHHHHHHHhhcCC--CccCCCCCCcCCCcchhhhhhccCceEEEEcCCccccChhhHHHHHhhc----cc--
Q 021362 182 APWTFNPLLLLNCLKNLRNQG--SVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMF----DE-- 253 (313)
Q Consensus 182 ~~~~~~~~~~~~~l~~l~~~~--~~~~~~LSgG~kqRv~ia~al~~~ar~Li~d~~~lllDE~~~~~l~~l~----~~-- 253 (313)
. .....+.+.++.+.... .... .||| +..+++++++|++.. +|+...+.+.+.. ..
T Consensus 103 ~---~~~~~~~~~i~~~~~~~~~~~~~-~ls~-----------l~~~~~vlilDE~~~-L~~~~~~~L~~~le~~~~~~~ 166 (354)
T 1sxj_E 103 N---NDRIVIQELLKEVAQMEQVDFQD-SKDG-----------LAHRYKCVIINEANS-LTKDAQAALRRTMEKYSKNIR 166 (354)
T ss_dssp ----CCHHHHHHHHHHHTTTTC------------------------CCEEEEEECTTS-SCHHHHHHHHHHHHHSTTTEE
T ss_pred C---cchHHHHHHHHHHHHhccccccc-cccc-----------cCCCCeEEEEeCccc-cCHHHHHHHHHHHHhhcCCCE
Confidence 0 11123444444443111 1111 4455 344588999999887 8885444444433 22
Q ss_pred eEEEEcChHHHHH
Q 021362 254 KWFIEVDLDTAMQ 266 (313)
Q Consensus 254 ~i~vtHd~~~~~~ 266 (313)
.|++||+++.+..
T Consensus 167 ~Il~t~~~~~l~~ 179 (354)
T 1sxj_E 167 LIMVCDSMSPIIA 179 (354)
T ss_dssp EEEEESCSCSSCH
T ss_pred EEEEeCCHHHHHH
Confidence 3699999765433
|
| >1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2 | Back alignment and structure |
|---|
Probab=98.78 E-value=8.1e-10 Score=104.91 Aligned_cols=154 Identities=13% Similarity=0.080 Sum_probs=85.3
Q ss_pred ccCCCcEEEEECCCCCcHHHHHHHHHH------------HhcccCCCCceeecCCCC---------CCCeE---EEEecC
Q 021362 103 NVNVKHIVGLAGPPGAGKSTLAAEVVR------------RINKIWPQKASSFDSQVK---------PPDVA---TVLPMD 158 (313)
Q Consensus 103 ~i~~Geiv~l~GpNGsGKSTLlk~l~g------------l~~~~~p~~G~i~~~g~~---------~~~~i---~~v~qd 158 (313)
.+.+|..+||+|+||||||||+|+|+| .+. |+.|.+.+.|.. ..+.+ .++.+-
T Consensus 16 ~v~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~---p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~ 92 (392)
T 1ni3_A 16 RPGNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATID---PEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDI 92 (392)
T ss_dssp SSSSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCC---TTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECT
T ss_pred cccCCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeec---ceeeeeeeCCcchhhhhhhcccccccCcceEEEec
Confidence 568899999999999999999999999 444 888999887621 11112 234433
Q ss_pred CCCCCcccCCcccCh--HHHHHhcCCCCCccHHHHHHHHHHhhcCCCccCCCCCCcCCCcchhhhhhccCceEEEEcCCc
Q 021362 159 GFHLYLSQLDAMEDP--KEAHARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNY 236 (313)
Q Consensus 159 ~~~~~~~~ltv~e~~--~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~LSgG~kqRv~ia~al~~~ar~Li~d~~~ 236 (313)
+.... ..+..+++ .+....+... .++..++...+..+..+++++. .+ .+++++|+++
T Consensus 93 pGl~~--~~s~~e~L~~~fl~~ir~~d---------~il~Vvd~~~d~~i~~v~~~~d---P~-------~di~ildeel 151 (392)
T 1ni3_A 93 AGLTK--GASTGVGLGNAFLSHVRAVD---------AIYQVVRAFDDAEIIHVEGDVD---PI-------RDLSIIVDEL 151 (392)
T ss_dssp GGGCC--CCCSSSSSCHHHHHHHTTCS---------EEEEEEECCCTTCSSCCSSSSC---HH-------HHHHHHHHHH
T ss_pred ccccc--CCcHHHHHHHHHHHHHHHHH---------HHHHHHhccccceeeeeccccC---cc-------hhhhhchhhh
Confidence 33222 24555544 3322222110 0111111222333444565541 01 2555666666
Q ss_pred cccChh----hHHHHHhh-ccce-EEEEcChHHHHH---HHh-----h-cccccCCchH
Q 021362 237 LFLDGG----VWKDVSSM-FDEK-WFIEVDLDTAMQ---RVL-----K-RHISTGKPPD 280 (313)
Q Consensus 237 lllDE~----~~~~l~~l-~~~~-i~vtHd~~~~~~---rv~-----g-riv~~G~~~e 280 (313)
.++|.. .++.+..+ ...+ .+++|++..+.. ++. | +++..|...+
T Consensus 152 ~~~D~~~~~k~~~~l~~~~~~~g~ti~sh~~~~~~~l~~~i~~~L~~G~~~~~~~~~~~ 210 (392)
T 1ni3_A 152 LIKDAEFVEKHLEGLRKITSRGANTLEMKAKKEEQAIIEKVYQYLTETKQPIRKGDWSN 210 (392)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCSSCSSSHHHHHHHHHHHHHHHHHHHTTCSCGGGSCCCH
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCccccccHHHHHHHHHHHHHHhccCCceeecCCCCH
Confidence 777763 44555555 3332 234898887766 443 7 7777666443
|
| >2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A* | Back alignment and structure |
|---|
Probab=98.70 E-value=3.4e-09 Score=109.31 Aligned_cols=90 Identities=14% Similarity=0.139 Sum_probs=70.4
Q ss_pred HHHHhhcC---CCccCCCCCCcCCCcchhhhhhccCc--eEEEEcCCccccCh----hhHHHHHhhccc---eEEEEcCh
Q 021362 194 CLKNLRNQ---GSVYAPSFDHGVGDPVEDDILVGLQH--KVVIVDGNYLFLDG----GVWKDVSSMFDE---KWFIEVDL 261 (313)
Q Consensus 194 ~l~~l~~~---~~~~~~~LSgG~kqRv~ia~al~~~a--r~Li~d~~~lllDE----~~~~~l~~l~~~---~i~vtHd~ 261 (313)
.|..++.. .++.+.+|||||+|||+||++|+.++ +++++|+|+..||. .+++.|+.+.+. +|+|+||+
T Consensus 362 ~L~~vGL~~l~l~r~~~tLSGGe~QRV~LA~aL~~~p~~~llILDEPT~~Ld~~~~~~L~~~l~~L~~~G~TVIvVeHdl 441 (842)
T 2vf7_A 362 VLLHLGLGYLGLDRSTPTLSPGELQRLRLATQLYSNLFGVVYVLDEPSAGLHPADTEALLSALENLKRGGNSLFVVEHDL 441 (842)
T ss_dssp HHHHTTCTTSBTTCBGGGSCHHHHHHHHHHHHTTTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHTTTCEEEEECCCH
T ss_pred HHHhCCCCcCCccCCcCcCCHHHHHHHHHHHHHhhCCCCeEEEeeCccccCCHHHHHHHHHHHHHHHHcCCEEEEEcCCH
Confidence 45566633 46788899999999999999999998 59999999999998 455555555443 57999999
Q ss_pred HHHHH--HHh----------hcccccCCchHHHH
Q 021362 262 DTAMQ--RVL----------KRHISTGKPPDVAK 283 (313)
Q Consensus 262 ~~~~~--rv~----------griv~~G~~~ev~~ 283 (313)
+++.. |++ |++++.|+++++..
T Consensus 442 ~~l~~aD~ii~lgpgaG~~~G~iv~~g~~~~~~~ 475 (842)
T 2vf7_A 442 DVIRRADWLVDVGPEAGEKGGEILYSGPPEGLKH 475 (842)
T ss_dssp HHHTTCSEEEEECSSSGGGCCSEEEEECGGGGGG
T ss_pred HHHHhCCEEEEeCCCcccCCCEEEEecCHHHHHh
Confidence 96644 443 57888999888754
|
| >1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A* | Back alignment and structure |
|---|
Probab=98.69 E-value=5.1e-09 Score=95.80 Aligned_cols=56 Identities=16% Similarity=0.126 Sum_probs=45.9
Q ss_pred EEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecC
Q 021362 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDS 144 (313)
Q Consensus 78 l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~ 144 (313)
+.++++++.|+.. . ++++|+ +|++++|+|+||+||||++..|++++. +..|+|.+.
T Consensus 77 ~~~~~l~~~~~~~-----~-~~i~~~--~~~~i~i~g~~G~GKTT~~~~la~~~~---~~~~~v~l~ 132 (295)
T 1ls1_A 77 TVYEALKEALGGE-----A-RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYK---GKGRRPLLV 132 (295)
T ss_dssp HHHHHHHHHTTSS-----C-CCCCCC--SSEEEEEECCTTTTHHHHHHHHHHHHH---HTTCCEEEE
T ss_pred HHHHHHHHHHCCC-----C-ceeecC--CCeEEEEECCCCCCHHHHHHHHHHHHH---HcCCeEEEe
Confidence 4567888888642 1 678888 999999999999999999999999998 766666543
|
| >1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=98.66 E-value=1.2e-08 Score=87.60 Aligned_cols=28 Identities=39% Similarity=0.515 Sum_probs=23.9
Q ss_pred CCCcEEEEECCCCCcHHHHHHHHHHHhc
Q 021362 105 NVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 105 ~~Geiv~l~GpNGsGKSTLlk~l~gl~~ 132 (313)
++|++++|+||||||||||+++|+|+++
T Consensus 2 ~~g~~i~lvGpsGaGKSTLl~~L~~~~~ 29 (198)
T 1lvg_A 2 AGPRPVVLSGPSGAGKSTLLKKLFQEHS 29 (198)
T ss_dssp ---CCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCc
Confidence 5789999999999999999999999983
|
| >1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B* | Back alignment and structure |
|---|
Probab=98.66 E-value=6.1e-09 Score=85.71 Aligned_cols=60 Identities=10% Similarity=0.088 Sum_probs=49.1
Q ss_pred CccCCCCCCcCCCcchhh------hhhccCceEEEEcCCccccCh----hhHHHHHhhccc---eEEEEcChH
Q 021362 203 SVYAPSFDHGVGDPVEDD------ILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFDE---KWFIEVDLD 262 (313)
Q Consensus 203 ~~~~~~LSgG~kqRv~ia------~al~~~ar~Li~d~~~lllDE----~~~~~l~~l~~~---~i~vtHd~~ 262 (313)
++++.+||||||||++|| ++++.+++++++|+|+..||+ .+++.|.++.+. .+++|||++
T Consensus 52 ~~~~~~LSgGe~qrv~lA~~Lalaral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~~ 124 (148)
T 1f2t_B 52 ERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDEE 124 (148)
T ss_dssp EECGGGSCHHHHHHHHHHHHHHHHHHHHSSCSEEEEESCSCTTCHHHHHHHHHHHHHTGGGSSEEEEEESCGG
T ss_pred cCChhHCCHHHHHHHHHHhhhHHHHHHcCCCCEEEEECCCccCCHHHHHHHHHHHHHHHccCCEEEEEEChHH
Confidence 456779999999999876 788899999999999999999 455666665432 479999985
|
| >1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=98.63 E-value=3.5e-07 Score=78.31 Aligned_cols=70 Identities=17% Similarity=0.153 Sum_probs=41.0
Q ss_pred EEEEcCCccccChhhHHHHHhhccceEEEEcChHHHHHHHhhcccccCCchHHHHHHHHhcCCchhHHhhhcccCccEEe
Q 021362 229 VVIVDGNYLFLDGGVWKDVSSMFDEKWFIEVDLDTAMQRVLKRHISTGKPPDVAKWRIEYNDRPNAELIMKSKKNADLVI 308 (313)
Q Consensus 229 ~Li~d~~~lllDE~~~~~l~~l~~~~i~vtHd~~~~~~rv~griv~~G~~~ev~~~~~~~~~~~~~~~i~~~~~~ad~ii 308 (313)
.++.+.+++. |.- +...++..++++.+.++..+|+..|. |.+.+-+..++.. ..+..+. ...||++|
T Consensus 107 ~vv~~~~~l~--e~~---~~~~~d~vi~l~~~~e~~~~Rl~~R~---~~~~e~~~~r~~~-q~~~~~~----~~~ad~vI 173 (206)
T 1jjv_A 107 YTLFVVPLLI--ENK---LTALCDRILVVDVSPQTQLARSAQRD---NNNFEQIQRIMNS-QVSQQER----LKWADDVI 173 (206)
T ss_dssp EEEEECTTTT--TTT---CGGGCSEEEEEECCHHHHHHHHC--------CHHHHHHHHHH-SCCHHHH----HHHCSEEE
T ss_pred EEEEEechhh--hcC---cHhhCCEEEEEECCHHHHHHHHHHcC---CCCHHHHHHHHHh-cCChHHH----HHhCCEEE
Confidence 5666665432 211 34567778999999999988887553 5455555555554 2333332 34689999
Q ss_pred ecC
Q 021362 309 KSI 311 (313)
Q Consensus 309 ~~~ 311 (313)
++.
T Consensus 174 dn~ 176 (206)
T 1jjv_A 174 NND 176 (206)
T ss_dssp ECC
T ss_pred ECC
Confidence 875
|
| >2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=98.59 E-value=2.1e-08 Score=85.60 Aligned_cols=35 Identities=20% Similarity=0.355 Sum_probs=29.5
Q ss_pred cccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCc
Q 021362 102 SNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA 139 (313)
Q Consensus 102 l~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G 139 (313)
++|.+|++++|+||||||||||+++|++++. |+.|
T Consensus 1 m~i~~g~~i~l~G~~GsGKSTl~~~L~~~~~---~~~~ 35 (207)
T 2j41_A 1 MDNEKGLLIVLSGPSGVGKGTVRKRIFEDPS---TSYK 35 (207)
T ss_dssp ---CCCCEEEEECSTTSCHHHHHHHHHHCTT---CCEE
T ss_pred CCCCCCCEEEEECCCCCCHHHHHHHHHHhhC---CCeE
Confidence 3678999999999999999999999999986 6555
|
| >2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=98.56 E-value=3.9e-09 Score=103.19 Aligned_cols=136 Identities=17% Similarity=0.092 Sum_probs=82.1
Q ss_pred EEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCCCC------
Q 021362 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPD------ 150 (313)
Q Consensus 77 ~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~~~------ 150 (313)
+.+++++.+.|.... +++++++.+++| +.|+||||+|||||+++|++... .+.+.+++.+...
T Consensus 40 k~~l~~lv~~l~~~~----~~~~lg~~ip~G--vLL~GppGtGKTtLaraIa~~~~-----~~~i~i~g~~~~~~~~g~~ 108 (499)
T 2dhr_A 40 KEELKEIVEFLKNPS----RFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR-----VPFITASGSDFVEMFVGVG 108 (499)
T ss_dssp HHHHHHHHHHHHCGG----GTTTTSCCCCSE--EEEECSSSSSHHHHHHHHHHHTT-----CCEEEEEGGGGTSSCTTHH
T ss_pred HHHHHHHHHHhhchh----hhhhccCCCCce--EEEECCCCCCHHHHHHHHHHHhC-----CCEEEEehhHHHHhhhhhH
Confidence 355677777776555 899999999999 89999999999999999999873 5666666543211
Q ss_pred --eEEEEecCCCCCCcccCCcccChHHHHHhcCC----CCCccHHHHHHHHHHhhcCCCccCCCCCCcCCCcchhhhhhc
Q 021362 151 --VATVLPMDGFHLYLSQLDAMEDPKEAHARRGA----PWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVG 224 (313)
Q Consensus 151 --~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~----~~~~~~~~~~~~l~~l~~~~~~~~~~LSgG~kqRv~ia~al~ 224 (313)
.+..+||...... +.+.+.|++.......+. ...+....+..++. .||||++|+..++++..
T Consensus 109 ~~~v~~lfq~a~~~~-p~il~IDEId~l~~~r~~~~~~~~~e~~~~l~~LL~-----------~Ldg~~~~~~viviAat 176 (499)
T 2dhr_A 109 AARVRDLFETAKRHA-PCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLV-----------EMDGFEKDTAIVVMAAT 176 (499)
T ss_dssp HHHHHHHTTTSSSSS-SCEEEEECGGGTCCCSSSSTTTSSHHHHHHHHHHHH-----------HGGGCCSSCCCEEEECC
T ss_pred HHHHHHHHHHHHhcC-CCEEEEehHHHHHHhhccCcCCCcHHHHHHHHHHHH-----------HhcccccCccEEEEEec
Confidence 1334555432111 124556666432111110 01111122233332 47899999988866666
Q ss_pred cCceEEEEcCCcc
Q 021362 225 LQHKVVIVDGNYL 237 (313)
Q Consensus 225 ~~ar~Li~d~~~l 237 (313)
..+.. +||.++
T Consensus 177 n~p~~--LD~aLl 187 (499)
T 2dhr_A 177 NRPDI--LDPALL 187 (499)
T ss_dssp SCGGG--SCTTTS
T ss_pred CChhh--cCcccc
Confidence 66654 455544
|
| >2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A* | Back alignment and structure |
|---|
Probab=98.55 E-value=6.1e-07 Score=81.98 Aligned_cols=43 Identities=23% Similarity=0.266 Sum_probs=36.4
Q ss_pred CCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCCCCeEEEEecCCC
Q 021362 105 NVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGF 160 (313)
Q Consensus 105 ~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~~~~i~~v~qd~~ 160 (313)
.+|++++|+||||+||||+++.|++.+. +++| +++.++.+|.+
T Consensus 103 ~~g~vi~lvG~~GsGKTTl~~~LA~~l~---~~~G----------~~V~lv~~D~~ 145 (296)
T 2px0_A 103 IHSKYIVLFGSTGAGKTTTLAKLAAISM---LEKH----------KKIAFITTDTY 145 (296)
T ss_dssp CCSSEEEEEESTTSSHHHHHHHHHHHHH---HTTC----------CCEEEEECCCS
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHH---HhcC----------CEEEEEecCcc
Confidence 5799999999999999999999999997 6666 34677888754
|
| >2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10 | Back alignment and structure |
|---|
Probab=98.50 E-value=7.9e-09 Score=96.35 Aligned_cols=63 Identities=21% Similarity=0.161 Sum_probs=54.7
Q ss_pred cEEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCC
Q 021362 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQ 145 (313)
Q Consensus 76 ~~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g 145 (313)
.+++.+++.+.|+... +++++++.+.+|.+++|+|+||+|||||++.|++.+. +..|++.+-+
T Consensus 29 ~~ie~~~~~~~~~~~~----~~~~l~~~~~~~~~i~i~G~~g~GKSTl~~~l~~~~~---~~~~~v~v~~ 91 (341)
T 2p67_A 29 TLVESRHPRHQALSTQ----LLDAIMPYCGNTLRLGVTGTPGAGKSTFLEAFGMLLI---REGLKVAVIA 91 (341)
T ss_dssp HHHHCCCHHHHHHHHH----HHHHHGGGCSCSEEEEEEECTTSCHHHHHHHHHHHHH---HTTCCEEEEE
T ss_pred hHhhcCCchhhhHHHH----HHHhCCcccCCCEEEEEEcCCCCCHHHHHHHHHHHHH---hcCCeEEEEe
Confidence 4678888888888766 8999999999999999999999999999999999997 7777665433
|
| >1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=98.49 E-value=5.8e-08 Score=81.88 Aligned_cols=28 Identities=14% Similarity=0.411 Sum_probs=26.0
Q ss_pred CCCcEEEEECCCCCcHHHHHHHHHHHhc
Q 021362 105 NVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 105 ~~Geiv~l~GpNGsGKSTLlk~l~gl~~ 132 (313)
.+|++++|+||||||||||+++|+++++
T Consensus 3 ~~g~~i~i~GpsGsGKSTL~~~L~~~~~ 30 (180)
T 1kgd_A 3 HMRKTLVLLGAHGVGRRHIKNTLITKHP 30 (180)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 3689999999999999999999999874
|
| >3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A* | Back alignment and structure |
|---|
Probab=98.47 E-value=4.3e-08 Score=82.31 Aligned_cols=36 Identities=28% Similarity=0.424 Sum_probs=32.0
Q ss_pred ccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCc
Q 021362 101 ASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA 139 (313)
Q Consensus 101 sl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G 139 (313)
+|++.+|+.++|.||||+|||||+++|++.+. |++|
T Consensus 32 ~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~---~~~g 67 (180)
T 3ec2_A 32 NFNPEEGKGLTFVGSPGVGKTHLAVATLKAIY---EKKG 67 (180)
T ss_dssp SCCGGGCCEEEECCSSSSSHHHHHHHHHHHHH---HHSC
T ss_pred hccccCCCEEEEECCCCCCHHHHHHHHHHHHH---HHcC
Confidence 56778899999999999999999999999996 5555
|
| >1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A | Back alignment and structure |
|---|
Probab=98.47 E-value=8.7e-08 Score=88.60 Aligned_cols=47 Identities=19% Similarity=0.140 Sum_probs=42.3
Q ss_pred cccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCC
Q 021362 98 SALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK 147 (313)
Q Consensus 98 ~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~ 147 (313)
.+++|++++|++++|+|+||+||||++..|++.+. +..|+|.+.+.+
T Consensus 96 ~~l~~~~~~~~vI~ivG~~G~GKTT~~~~LA~~l~---~~g~kVllid~D 142 (320)
T 1zu4_A 96 YRIDFKENRLNIFMLVGVNGTGKTTSLAKMANYYA---ELGYKVLIAAAD 142 (320)
T ss_dssp CCCCCCTTSCEEEEEESSTTSSHHHHHHHHHHHHH---HTTCCEEEEECC
T ss_pred cCccccCCCCeEEEEECCCCCCHHHHHHHHHHHHH---HCCCeEEEEeCC
Confidence 68999999999999999999999999999999998 888888765544
|
| >2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A* | Back alignment and structure |
|---|
Probab=98.47 E-value=1.5e-08 Score=99.05 Aligned_cols=155 Identities=12% Similarity=-0.009 Sum_probs=81.3
Q ss_pred ccccccCCCcEEEEECCCCCcHHHHHHHHHH--HhcccCCCCceeecCCCCCCCeEEEEecCCCCCCcccC--CcccChH
Q 021362 99 ALASNVNVKHIVGLAGPPGAGKSTLAAEVVR--RINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQL--DAMEDPK 174 (313)
Q Consensus 99 ~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~g--l~~~~~p~~G~i~~~g~~~~~~i~~v~qd~~~~~~~~l--tv~e~~~ 174 (313)
.+++++.++..+.|.|++||||||++++|.. +.+ ++.|++.+-+.+... +. ++. +... +++ ++.++..
T Consensus 159 pv~ldL~~~pHlLIaG~TGSGKSt~L~~li~sLl~~---~~p~~v~l~liDpK~-~e--l~~-~~~l-Phl~~~Vvtd~~ 230 (512)
T 2ius_A 159 PVVADLAKMPHLLVAGTTGSGASVGVNAMILSMLYK---AQPEDVRFIMIDPKM-LE--LSV-YEGI-PHLLTEVVTDMK 230 (512)
T ss_dssp EEEEEGGGSCSEEEECCTTSSHHHHHHHHHHHHHTT---CCTTTEEEEEECCSS-SG--GGG-GTTC-TTBSSSCBCSHH
T ss_pred EEEEEcccCceEEEECCCCCCHHHHHHHHHHHHHHh---CCCceEEEEEECCch-hh--hhh-hccC-CcccceeecCHH
Confidence 3667788899999999999999999999876 334 555666554433321 00 111 1111 112 3556665
Q ss_pred HHHHhcCCCCCccHHHHHHHHHHhhcCC----CccC-CCCCCcCCCcch----------hhhhhccCce-EEEEcCCccc
Q 021362 175 EAHARRGAPWTFNPLLLLNCLKNLRNQG----SVYA-PSFDHGVGDPVE----------DDILVGLQHK-VVIVDGNYLF 238 (313)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~l~~l~~~~----~~~~-~~LSgG~kqRv~----------ia~al~~~ar-~Li~d~~~ll 238 (313)
...........+..++ .+++...+... +... ..+|+|++|+.. ++.++...+. +++.|+...+
T Consensus 231 ~a~~~L~~~~~EmerR-~~ll~~~Gv~~i~~yn~~~~~~~s~G~~~~~~~~~pg~~~~~~a~~l~~lP~ivlvIDE~~~l 309 (512)
T 2ius_A 231 DAANALRWCVNEMERR-YKLMSALGVRNLAGYNEKIAEADRMMRPIPDPYWKPGDSMDAQHPVLKKEPYIVVLVDEFADL 309 (512)
T ss_dssp HHHHHHHHHHHHHHHH-HHHHHHTTCSSHHHHHHHHHHHHHTTCCCBCTTC---------CCBCCCCCEEEEEEETHHHH
T ss_pred HHHHHHHHHHHHHHHH-HHHHHHcCCccHHHHHHHHHHHhhcCCcccccccccccchhccccccccCCcEEEEEeCHHHH
Confidence 4332211111112222 24455444211 1112 267999998742 3333333454 6667777666
Q ss_pred cCh---hhHHHHHhh---ccc----eEEEEcChH
Q 021362 239 LDG---GVWKDVSSM---FDE----KWFIEVDLD 262 (313)
Q Consensus 239 lDE---~~~~~l~~l---~~~----~i~vtHd~~ 262 (313)
+++ .+.+.|..+ ... .+++||.+.
T Consensus 310 l~~~~~~~~~~l~~Lar~gRa~GI~LIlaTQrp~ 343 (512)
T 2ius_A 310 MMTVGKKVEELIARLAQKARAAGIHLVLATQRPS 343 (512)
T ss_dssp HHHHHHHHHHHHHHHHHHCGGGTEEEEEEESCCC
T ss_pred HhhhhHHHHHHHHHHHHHhhhCCcEEEEEecCCc
Confidence 653 223333333 222 269999987
|
| >3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A* | Back alignment and structure |
|---|
Probab=98.46 E-value=1.5e-07 Score=89.65 Aligned_cols=30 Identities=30% Similarity=0.335 Sum_probs=25.8
Q ss_pred ccCCCcEEEEECCCCCcHHHHHHHH--HHHhc
Q 021362 103 NVNVKHIVGLAGPPGAGKSTLAAEV--VRRIN 132 (313)
Q Consensus 103 ~i~~Geiv~l~GpNGsGKSTLlk~l--~gl~~ 132 (313)
-|++|+++.|+||||||||||++.| .++.+
T Consensus 174 GI~~Gei~~I~G~sGsGKTTLl~~la~~~~~p 205 (400)
T 3lda_A 174 GVETGSITELFGEFRTGKSQLCHTLAVTCQIP 205 (400)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHTTSC
T ss_pred CcCCCcEEEEEcCCCCChHHHHHHHHHHhccC
Confidence 6889999999999999999999955 45554
|
| >2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=98.41 E-value=6.5e-07 Score=76.41 Aligned_cols=70 Identities=20% Similarity=0.275 Sum_probs=41.7
Q ss_pred eEEEEcCCccccChhhHHHHHhhccceEEEEcChHHHHHHHhhcccccCCchHHHHHHHHhcCCchhHHhhhcccCccEE
Q 021362 228 KVVIVDGNYLFLDGGVWKDVSSMFDEKWFIEVDLDTAMQRVLKRHISTGKPPDVAKWRIEYNDRPNAELIMKSKKNADLV 307 (313)
Q Consensus 228 r~Li~d~~~lllDE~~~~~l~~l~~~~i~vtHd~~~~~~rv~griv~~G~~~ev~~~~~~~~~~~~~~~i~~~~~~ad~i 307 (313)
.+++.|.+++.-. .+..+.+..++++-+.+...+|+..| |...+-+.+++... .+. .+....||++
T Consensus 106 ~~vive~~~l~~~-----~~~~~~~~~i~l~~~~e~~~~Rl~~R----~~~~~~~~~~~~~~-~~~----~~~~~~ad~v 171 (204)
T 2if2_A 106 TLFILEASLLVEK-----GTYKNYDKLIVVYAPYEVCKERAIKR----GMSEEDFERRWKKQ-MPI----EEKVKYADYV 171 (204)
T ss_dssp CCEEEECSCSTTT-----TCGGGSSEEEEECCCHHHHHHHHHHT----CCCHHHHHHHHTTS-CCH----HHHGGGCSEE
T ss_pred CEEEEEccccccC-----CchhhCCEEEEEECCHHHHHHHHHHc----CCCHHHHHHHHHhC-CCh----hHHHhcCCEE
Confidence 4677777653321 12234667789999999988888766 44444444444433 232 2234567888
Q ss_pred eecC
Q 021362 308 IKSI 311 (313)
Q Consensus 308 i~~~ 311 (313)
|++.
T Consensus 172 Id~~ 175 (204)
T 2if2_A 172 IDNS 175 (204)
T ss_dssp CCCS
T ss_pred EECC
Confidence 8764
|
| >4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP} | Back alignment and structure |
|---|
Probab=98.38 E-value=1.8e-07 Score=80.03 Aligned_cols=31 Identities=26% Similarity=0.294 Sum_probs=25.3
Q ss_pred ccccCCCcEEEEECCCCCcHHHHHHHHHHHh
Q 021362 101 ASNVNVKHIVGLAGPPGAGKSTLAAEVVRRI 131 (313)
Q Consensus 101 sl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~ 131 (313)
.++.++|++++|+||||||||||+++|++.+
T Consensus 23 ~m~~~~g~~i~l~G~~GsGKSTl~~~L~~~~ 53 (200)
T 4eun_A 23 MMTGEPTRHVVVMGVSGSGKTTIAHGVADET 53 (200)
T ss_dssp -----CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred hhcCCCCcEEEEECCCCCCHHHHHHHHHHhh
Confidence 3556789999999999999999999999987
|
| >1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=98.36 E-value=2.3e-07 Score=88.99 Aligned_cols=57 Identities=11% Similarity=-0.002 Sum_probs=47.1
Q ss_pred CCCCcCCCcchhhhhhc----cCceEEEEcCCccccCh----hhHHHHHhhcc---ceEEEEcChHHH
Q 021362 208 SFDHGVGDPVEDDILVG----LQHKVVIVDGNYLFLDG----GVWKDVSSMFD---EKWFIEVDLDTA 264 (313)
Q Consensus 208 ~LSgG~kqRv~ia~al~----~~ar~Li~d~~~lllDE----~~~~~l~~l~~---~~i~vtHd~~~~ 264 (313)
.||||||||++||++++ .++.++++|++...||+ .+.+.|.++.. ..+++||+....
T Consensus 333 ~lS~Gq~~~~~la~~la~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~~ii~th~~~~~ 400 (430)
T 1w1w_A 333 YLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFIVISLKNTMF 400 (430)
T ss_dssp GSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCBTTBEEEEECSCHHHH
T ss_pred cCCcchHHHHHHHHHHHHhcCCCCCEEEeCCCcccCCHHHHHHHHHHHHHHhcCCCEEEEEECCHHHH
Confidence 59999999999999999 57999999999999999 45566666543 357999997654
|
| >2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A* | Back alignment and structure |
|---|
Probab=98.36 E-value=1.3e-07 Score=82.85 Aligned_cols=31 Identities=19% Similarity=0.179 Sum_probs=27.8
Q ss_pred cccccCCCcEEEEECCCCCcHHHHHHHHHHH
Q 021362 100 LASNVNVKHIVGLAGPPGAGKSTLAAEVVRR 130 (313)
Q Consensus 100 vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl 130 (313)
-+.+.++|++++|.|+||||||||+++|+|+
T Consensus 13 ~~~~~~~g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 13 KYAEGTQPFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp CBTTTCCCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred ccCCCCCceEEEEECCCCCCHHHHHHHHHhc
Confidence 3456789999999999999999999999986
|
| >1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11 | Back alignment and structure |
|---|
Probab=98.33 E-value=2.7e-07 Score=80.55 Aligned_cols=28 Identities=14% Similarity=0.265 Sum_probs=26.6
Q ss_pred ccCCCcEEEEECCCCCcHHHHHHHHHHH
Q 021362 103 NVNVKHIVGLAGPPGAGKSTLAAEVVRR 130 (313)
Q Consensus 103 ~i~~Geiv~l~GpNGsGKSTLlk~l~gl 130 (313)
.+++|++++|+||||||||||++.|++.
T Consensus 20 gi~~G~~~~i~G~~GsGKTtl~~~l~~~ 47 (243)
T 1n0w_A 20 GIETGSITEMFGEFRTGKTQICHTLAVT 47 (243)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCcCCeEEEEECCCCCcHHHHHHHHHHH
Confidence 5889999999999999999999999994
|
| >1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A | Back alignment and structure |
|---|
Probab=98.33 E-value=1.6e-07 Score=88.73 Aligned_cols=42 Identities=24% Similarity=0.314 Sum_probs=38.0
Q ss_pred cccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeec
Q 021362 96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFD 143 (313)
Q Consensus 96 ~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~ 143 (313)
+|+++++++++|++++|+||||||||||+++|+|.. .|.+..
T Consensus 158 ~l~~~~~~i~~~~~i~l~G~~GsGKSTl~~~l~~~~------~g~~~~ 199 (377)
T 1svm_A 158 FLKCMVYNIPKKRYWLFKGPIDSGKTTLAAALLELC------GGKALN 199 (377)
T ss_dssp HHHHHHHCCTTCCEEEEECSTTSSHHHHHHHHHHHH------CCEEEC
T ss_pred HHHhcccccCCCCEEEEECCCCCCHHHHHHHHHhhc------CCcEEE
Confidence 899999999999999999999999999999999966 366654
|
| >3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans} | Back alignment and structure |
|---|
Probab=98.32 E-value=2.6e-07 Score=91.38 Aligned_cols=41 Identities=27% Similarity=0.225 Sum_probs=35.5
Q ss_pred cccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCc-eee-cCC
Q 021362 102 SNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSF-DSQ 145 (313)
Q Consensus 102 l~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G-~i~-~~g 145 (313)
..+++|++++|+|+||||||||+++|+|++. |++| ++. ++|
T Consensus 364 ~~~~~G~iI~LiG~sGSGKSTLar~La~~L~---~~~G~~i~~lDg 406 (552)
T 3cr8_A 364 PRERQGFTVFFTGLSGAGKSTLARALAARLM---EMGGRCVTLLDG 406 (552)
T ss_dssp CGGGSCEEEEEEESSCHHHHHHHHHHHHHHH---TTCSSCEEEESS
T ss_pred cccccceEEEEECCCCChHHHHHHHHHHhhc---ccCCceEEEECC
Confidence 3678999999999999999999999999998 8876 563 554
|
| >3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=98.31 E-value=3.6e-07 Score=78.79 Aligned_cols=28 Identities=29% Similarity=0.513 Sum_probs=26.6
Q ss_pred CCCcEEEEECCCCCcHHHHHHHHHHHhc
Q 021362 105 NVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 105 ~~Geiv~l~GpNGsGKSTLlk~l~gl~~ 132 (313)
++|++++|+||||||||||++.|++.++
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~~ 33 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVREAVFKDPE 33 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHSTT
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhhCC
Confidence 5899999999999999999999999986
|
| >3kta_B Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xew_Y 1xex_B* | Back alignment and structure |
|---|
Probab=98.29 E-value=2.5e-07 Score=77.96 Aligned_cols=63 Identities=11% Similarity=-0.023 Sum_probs=49.9
Q ss_pred CccCCCCCCcCCCcchhhhhhcc----CceEEEEcCCccccCh----hhHHHHHhhccc--eEEEEcChHHHH
Q 021362 203 SVYAPSFDHGVGDPVEDDILVGL----QHKVVIVDGNYLFLDG----GVWKDVSSMFDE--KWFIEVDLDTAM 265 (313)
Q Consensus 203 ~~~~~~LSgG~kqRv~ia~al~~----~ar~Li~d~~~lllDE----~~~~~l~~l~~~--~i~vtHd~~~~~ 265 (313)
...+..||||||||++||++++. +++++++|++...||+ .+.+.|+++... .|+|||+.....
T Consensus 59 ~~~~~~LSgGekqr~ala~~la~~~~~~~~~llLDEp~a~LD~~~~~~~~~~l~~~~~~~~~ivith~~~~~~ 131 (173)
T 3kta_B 59 VKRIEAMSGGEKALTALAFVFAIQKFKPAPFYLFDEIDAHLDDANVKRVADLIKESSKESQFIVITLRDVMMA 131 (173)
T ss_dssp CCCGGGCCHHHHHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSCHHHHT
T ss_pred ccccccCCHHHHHHHHHHHHHHhcccCCCCEEEECCCccCCCHHHHHHHHHHHHHhccCCEEEEEEecHHHHH
Confidence 34566999999999999999974 4699999999999999 555666665443 479999976543
|
| >3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A | Back alignment and structure |
|---|
Probab=98.25 E-value=1.7e-07 Score=92.71 Aligned_cols=61 Identities=23% Similarity=0.291 Sum_probs=52.4
Q ss_pred EEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCC
Q 021362 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQV 146 (313)
Q Consensus 78 l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~ 146 (313)
+-++++.+.|+... ++.++++++ +|++++|+||||+|||||+++|++.+. +..|.|.+.+.
T Consensus 84 ~G~~~vk~~i~~~~----~l~~~~~~~-~g~~vll~Gp~GtGKTtlar~ia~~l~---~~~~~i~~~~~ 144 (543)
T 3m6a_A 84 HGLEKVKERILEYL----AVQKLTKSL-KGPILCLAGPPGVGKTSLAKSIAKSLG---RKFVRISLGGV 144 (543)
T ss_dssp SSCHHHHHHHHHHH----HHHHHSSSC-CSCEEEEESSSSSSHHHHHHHHHHHHT---CEEEEECCCC-
T ss_pred ccHHHHHHHHHHHH----HHHHhcccC-CCCEEEEECCCCCCHHHHHHHHHHhcC---CCeEEEEeccc
Confidence 44577777787655 889999999 899999999999999999999999998 88888888774
|
| >3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=98.21 E-value=1.3e-05 Score=68.31 Aligned_cols=26 Identities=19% Similarity=0.362 Sum_probs=23.8
Q ss_pred CcEEEEECCCCCcHHHHHHHHHHHhc
Q 021362 107 KHIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 107 Geiv~l~GpNGsGKSTLlk~l~gl~~ 132 (313)
..+++|+|++||||||+++.|++.+.
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~lg 43 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEACG 43 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 56899999999999999999999874
|
| >2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A | Back alignment and structure |
|---|
Probab=98.21 E-value=1.5e-06 Score=83.90 Aligned_cols=141 Identities=13% Similarity=0.145 Sum_probs=83.4
Q ss_pred cccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCCCCeEEEEecCCCCCCcccCCcccChHH
Q 021362 96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKE 175 (313)
Q Consensus 96 ~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~~~~i~~v~qd~~~~~~~~ltv~e~~~~ 175 (313)
.|+++...+.+|+++.|.|++|+|||||+..+++... +..| ..+.|+..+ ++..+....
T Consensus 192 ~LD~~~gGl~~G~liiI~G~pG~GKTtl~l~ia~~~~---~~~g----------~~Vl~~s~E--------~s~~~l~~r 250 (454)
T 2r6a_A 192 ELDRMTSGFQRSDLIIVAARPSVGKTAFALNIAQNVA---TKTN----------ENVAIFSLE--------MSAQQLVMR 250 (454)
T ss_dssp HHHHHHSSBCTTCEEEEECCTTSCHHHHHHHHHHHHH---HHSS----------CCEEEEESS--------SCHHHHHHH
T ss_pred HHHhhcCCCCCCCEEEEECCCCCCHHHHHHHHHHHHH---HhCC----------CcEEEEECC--------CCHHHHHHH
Confidence 6888888899999999999999999999999999875 4333 124455443 111111111
Q ss_pred HH-H---------hcCCCCCccHHHHHHHHHHhhcCC--CccCCCCCCcCCCcchhhhhhc--cCceEEEEcCCccccCh
Q 021362 176 AH-A---------RRGAPWTFNPLLLLNCLKNLRNQG--SVYAPSFDHGVGDPVEDDILVG--LQHKVVIVDGNYLFLDG 241 (313)
Q Consensus 176 ~~-~---------~~~~~~~~~~~~~~~~l~~l~~~~--~~~~~~LSgG~kqRv~ia~al~--~~ar~Li~d~~~lllDE 241 (313)
.. . ..|.-...+..++.+.++.+.... -...+.+|.++.+. .++.+. ..+++++.|..-++.+.
T Consensus 251 ~~~~~~~~~~~~l~~g~l~~~~~~~~~~a~~~l~~~~l~i~d~~~~s~~~i~~--~~~~l~~~~~~~livID~l~~~~~~ 328 (454)
T 2r6a_A 251 MLCAEGNINAQNLRTGKLTPEDWGKLTMAMGSLSNAGIYIDDTPSIRVSDIRA--KCRRLKQESGLGMIVIDYLQLIQGS 328 (454)
T ss_dssp HHHHHHTCCHHHHHTSCCCHHHHHHHHHHHHHHHSSCEEEECCTTCCHHHHHH--HHHHHHTTTCCCEEEEECGGGSCCS
T ss_pred HHHHHcCCCHHHHhcCCCCHHHHHHHHHHHHHHhcCCEEEECCCCCCHHHHHH--HHHHHHHHcCCCEEEEccHHHhccC
Confidence 00 0 112111223345555666655211 11234788887653 334443 67899999998887742
Q ss_pred ------------hhHHHHHhhccc----eEEEEc
Q 021362 242 ------------GVWKDVSSMFDE----KWFIEV 259 (313)
Q Consensus 242 ------------~~~~~l~~l~~~----~i~vtH 259 (313)
.+...|+.+.++ +|+++|
T Consensus 329 ~~~~~~~~~~i~~i~~~Lk~lAke~~i~vi~~sq 362 (454)
T 2r6a_A 329 GRSKENRQQEVSEISRSLKALARELEVPVIALSQ 362 (454)
T ss_dssp CC----CHHHHHHHHHHHHHHHHHHTCCEEEEEC
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEec
Confidence 344445555433 457777
|
| >1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A* | Back alignment and structure |
|---|
Probab=98.19 E-value=9.5e-07 Score=73.48 Aligned_cols=28 Identities=39% Similarity=0.617 Sum_probs=25.8
Q ss_pred CCCcEEEEECCCCCcHHHHHHHHHHHhc
Q 021362 105 NVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 105 ~~Geiv~l~GpNGsGKSTLlk~l~gl~~ 132 (313)
.+|++++|+|+|||||||++++|++.+.
T Consensus 6 ~~g~~i~l~G~~GsGKSTl~~~l~~~~g 33 (175)
T 1knq_A 6 HDHHIYVLMGVSGSGKSAVASEVAHQLH 33 (175)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHHT
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHhhC
Confidence 5799999999999999999999999873
|
| >3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0 | Back alignment and structure |
|---|
Probab=98.13 E-value=1.3e-06 Score=75.02 Aligned_cols=31 Identities=16% Similarity=0.291 Sum_probs=26.8
Q ss_pred cccCCCcEEEEECCCCCcHHHHHHHHHHHhc
Q 021362 102 SNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 102 l~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~ 132 (313)
+...+|++++|+||||||||||++.|.+.++
T Consensus 14 ~~~~~g~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 14 LYFQGRKTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp --CCSCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCCCCCCEEEEECcCCCCHHHHHHHHHhhCC
Confidence 4456899999999999999999999999874
|
| >1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2 | Back alignment and structure |
|---|
Probab=98.12 E-value=1.2e-06 Score=72.62 Aligned_cols=27 Identities=41% Similarity=0.646 Sum_probs=24.9
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHHHhc
Q 021362 106 VKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 106 ~Geiv~l~GpNGsGKSTLlk~l~gl~~ 132 (313)
.|++++|+||||||||||+++|++.+.
T Consensus 3 ~~~~i~l~G~~GsGKSTl~~~La~~l~ 29 (173)
T 1kag_A 3 EKRNIFLVGPMGAGKSTIGRQLAQQLN 29 (173)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHTT
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhC
Confidence 467899999999999999999999885
|
| >3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A* | Back alignment and structure |
|---|
Probab=98.11 E-value=8.3e-06 Score=71.86 Aligned_cols=60 Identities=15% Similarity=0.242 Sum_probs=39.2
Q ss_pred ceEEEEcChHHHHHHHhhcccccC--CchHHHHHHHHhcCCchhH-HhhhcccCcc-EEeecCC
Q 021362 253 EKWFIEVDLDTAMQRVLKRHISTG--KPPDVAKWRIEYNDRPNAE-LIMKSKKNAD-LVIKSID 312 (313)
Q Consensus 253 ~~i~vtHd~~~~~~rv~griv~~G--~~~ev~~~~~~~~~~~~~~-~i~~~~~~ad-~ii~~~~ 312 (313)
-.||++-++++..+|+..+....| ...+-+...+..++..... +..|.+...| ++|++..
T Consensus 148 lkifl~A~~e~Ra~Rr~~~l~~~~~~~~~~~~~~~i~~rD~~d~~r~~~pl~~~~dal~IDTs~ 211 (233)
T 3r20_A 148 VKIFLTASAEERARRRNAQNVANGLPDDYATVLADVQRRDHLDSTRPVSPLRAADDALVVDTSD 211 (233)
T ss_dssp EEEEEECCHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHSCSSCCSCCTTSEEEECTT
T ss_pred EEEEEECCHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHhhhhccccccccccCcEEEECCC
Confidence 458999999999887775444332 3334444456666665555 6667776666 8888764
|
| >1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B* | Back alignment and structure |
|---|
Probab=98.11 E-value=1.2e-06 Score=74.16 Aligned_cols=36 Identities=28% Similarity=0.199 Sum_probs=30.1
Q ss_pred cEEEEECCCCCcHHHHHHHHHHHhcccCC-----------CCceeecCCC
Q 021362 108 HIVGLAGPPGAGKSTLAAEVVRRINKIWP-----------QKASSFDSQV 146 (313)
Q Consensus 108 eiv~l~GpNGsGKSTLlk~l~gl~~~~~p-----------~~G~i~~~g~ 146 (313)
-.++|+|+||||||||++.++|... + ++|+|.++|.
T Consensus 30 ~kv~lvG~~g~GKSTLl~~l~~~~~---~~~~~~t~~~~~~~~~i~~~g~ 76 (191)
T 1oix_A 30 FKVVLIGDSGVGKSNLLSRFTRNEF---NLESKSTIGVEFATRSIQVDGK 76 (191)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHSCC---CCSCCCCCSEEEEEEEEEETTE
T ss_pred eEEEEECcCCCCHHHHHHHHhcCCC---CCCCCCccceEEEEEEEEECCE
Confidence 3689999999999999999999875 4 4677777764
|
| >1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A* | Back alignment and structure |
|---|
Probab=98.08 E-value=8.7e-07 Score=76.73 Aligned_cols=37 Identities=22% Similarity=0.437 Sum_probs=31.0
Q ss_pred CcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeec
Q 021362 107 KHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFD 143 (313)
Q Consensus 107 Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~ 143 (313)
+.+++|+||+||||||++++|++.+...+++.|.+..
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~~~g~~~~d~g~i~~ 41 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAEALQWHLLDSGAIYR 41 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCcccCcceee
Confidence 5689999999999999999999987311278888876
|
| >2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A | Back alignment and structure |
|---|
Probab=98.07 E-value=1.7e-06 Score=82.76 Aligned_cols=54 Identities=19% Similarity=0.155 Sum_probs=43.6
Q ss_pred EccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecC
Q 021362 80 ARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDS 144 (313)
Q Consensus 80 ~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~ 144 (313)
.+++.+.|+... ++++|+ +|++++++|+|||||||++..|++.+. +..|.|.+.
T Consensus 79 ~~~L~~~~~~~~------~~i~l~--~~~vi~i~G~~GsGKTT~~~~LA~~l~---~~g~~Vllv 132 (425)
T 2ffh_A 79 YEALKEALGGEA------RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYK---GKGRRPLLV 132 (425)
T ss_dssp HHHHHHHTTSSC------CCCCCC--SSEEEEEECCTTSSHHHHHHHHHHHHH---TTTCCEEEE
T ss_pred HHHHHHHhCCCc------ccccCC--CCeEEEEECCCCCCHHHHHHHHHHHHH---HcCCeEEEe
Confidence 356777886532 578887 899999999999999999999999998 766666543
|
| >4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A | Back alignment and structure |
|---|
Probab=98.06 E-value=3.3e-06 Score=74.13 Aligned_cols=37 Identities=24% Similarity=0.423 Sum_probs=27.5
Q ss_pred cccccccccC---CCcEEEEECCCCCcHHHHHHHHHHHhc
Q 021362 96 PTSALASNVN---VKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 96 ~L~~vsl~i~---~Geiv~l~GpNGsGKSTLlk~l~gl~~ 132 (313)
-|.++|+.+. +|.+++|.|++||||||+++.|+..+.
T Consensus 12 ~~~~~~~~~~~~~~g~~i~i~G~~GsGKsT~~~~l~~~l~ 51 (229)
T 4eaq_A 12 DLGTENLYFQSNAMSAFITFEGPEGSGKTTVINEVYHRLV 51 (229)
T ss_dssp --------CCCCCCCEEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CccCCCeeEeecCCCeEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 4566677666 999999999999999999999999996
|
| >2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.05 E-value=4.4e-06 Score=75.50 Aligned_cols=72 Identities=19% Similarity=0.470 Sum_probs=48.1
Q ss_pred ceEEEEcCCccccChhhHHHHHhhccceEEEEcChHHHHHHHhhcccccCCchHHHHHHHHhcCCchhHHhhhcccCccE
Q 021362 227 HKVVIVDGNYLFLDGGVWKDVSSMFDEKWFIEVDLDTAMQRVLKRHISTGKPPDVAKWRIEYNDRPNAELIMKSKKNADL 306 (313)
Q Consensus 227 ar~Li~d~~~lllDE~~~~~l~~l~~~~i~vtHd~~~~~~rv~griv~~G~~~ev~~~~~~~~~~~~~~~i~~~~~~ad~ 306 (313)
..+++.|+.+++ .. .+...++..|+++-+.++..+|+..|. |.+.+-+.+++... .+..+++ ..||+
T Consensus 181 ~~~vIveg~~l~-~~----~~~~~~d~vI~l~a~~ev~~~Rl~~R~---g~s~e~~~~ri~~q-~~~~~~~----~~AD~ 247 (281)
T 2f6r_A 181 KTLCVIDAAMLL-EA----GWQSMVHEVWTVVIPETEAVRRIVERD---GLSEAAAQSRLQSQ-MSGQQLV----EQSNV 247 (281)
T ss_dssp CCEEEEECTTTT-TT----TGGGGCSEEEEEECCHHHHHHHHHHHH---CCCHHHHHHHHHTS-CCHHHHH----HTCSE
T ss_pred CCEEEEEechhh-cc----chHHhCCEEEEEcCCHHHHHHHHHHcC---CCCHHHHHHHHHHc-CChHhhH----hhCCE
Confidence 467888988644 21 133556778999999999988887653 54555555666654 4544444 35899
Q ss_pred EeecC
Q 021362 307 VIKSI 311 (313)
Q Consensus 307 ii~~~ 311 (313)
+|++.
T Consensus 248 vIdn~ 252 (281)
T 2f6r_A 248 VLSTL 252 (281)
T ss_dssp EEECS
T ss_pred EEECC
Confidence 99875
|
| >1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F | Back alignment and structure |
|---|
Probab=98.02 E-value=1.5e-06 Score=79.40 Aligned_cols=54 Identities=13% Similarity=0.114 Sum_probs=42.9
Q ss_pred EccceEEccccccccccccc-cccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeec
Q 021362 80 ARCMDEVYDALAQRLLPTSA-LASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFD 143 (313)
Q Consensus 80 ~~~l~~~y~~~~~~~~~L~~-vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~ 143 (313)
.+++.+.|++.. .+ ++|+.+ |.+++++|+||+||||++..|++.+. +..|+|.+
T Consensus 77 ~~~l~~~~~~~~------~~~i~~~~~-~~vi~i~G~~G~GKTT~~~~la~~~~---~~g~~v~l 131 (297)
T 1j8m_F 77 YDELSNLFGGDK------EPKVIPDKI-PYVIMLVGVQGTGKTTTAGKLAYFYK---KKGFKVGL 131 (297)
T ss_dssp HHHHHHHTTCSC------CCCCSCSSS-SEEEEEECSSCSSTTHHHHHHHHHHH---HTTCCEEE
T ss_pred HHHHHHHhcccc------ccccccCCC-CeEEEEECCCCCCHHHHHHHHHHHHH---HCCCeEEE
Confidence 466777786532 46 888877 99999999999999999999999997 55555443
|
| >2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.01 E-value=3e-06 Score=79.12 Aligned_cols=40 Identities=33% Similarity=0.426 Sum_probs=34.6
Q ss_pred CCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCC
Q 021362 105 NVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK 147 (313)
Q Consensus 105 ~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~ 147 (313)
.++.+++|+|++|||||||++.|+|.+. ++.|+|.+.+.+
T Consensus 72 ~~~~~v~lvG~pgaGKSTLln~L~~~~~---~~~~~v~V~~~d 111 (349)
T 2www_A 72 PLAFRVGLSGPPGAGKSTFIEYFGKMLT---ERGHKLSVLAVD 111 (349)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHH---HTTCCEEEEECC
T ss_pred cCceEEEEEcCCCCCHHHHHHHHHHHhh---hcCCeEEEEeec
Confidence 3588999999999999999999999998 888887765544
|
| >3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A | Back alignment and structure |
|---|
Probab=98.01 E-value=2.6e-06 Score=80.31 Aligned_cols=53 Identities=21% Similarity=0.237 Sum_probs=46.9
Q ss_pred EEEEccceEEcccccccccccc--------------ccccccCCCcEEEEECCCCCcHHHHHHHHHHHhc
Q 021362 77 VVEARCMDEVYDALAQRLLPTS--------------ALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 77 ~l~~~~l~~~y~~~~~~~~~L~--------------~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~ 132 (313)
-++++||+..|.... ..|+ |+.+.+.+|+.++|+||+|+|||||++.|++.+.
T Consensus 133 ri~Fe~ltp~yP~er---~~Le~~~~~~~~tGiraID~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~i~ 199 (422)
T 3ice_A 133 KILFENLTPLHANSR---LRMERGNGSTEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIA 199 (422)
T ss_dssp SCCTTTSCEESCCSB---CCCCCTTCCTTHHHHHHHHHHSCCBTTCEEEEECCSSSSHHHHHHHHHHHHH
T ss_pred CceeccccccCCCCc---cccccCCCCcccccceeeeeeeeecCCcEEEEecCCCCChhHHHHHHHHHHh
Confidence 377899999997532 2677 8999999999999999999999999999999885
|
| >2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A* | Back alignment and structure |
|---|
Probab=98.00 E-value=2.8e-06 Score=71.04 Aligned_cols=28 Identities=29% Similarity=0.306 Sum_probs=25.8
Q ss_pred CCCcEEEEECCCCCcHHHHHHHHHHHhc
Q 021362 105 NVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 105 ~~Geiv~l~GpNGsGKSTLlk~l~gl~~ 132 (313)
.+|++++|+|++||||||+++.|++.+.
T Consensus 3 ~~g~~i~l~G~~GsGKST~~~~L~~~l~ 30 (179)
T 2pez_A 3 MRGCTVWLTGLSGAGKTTVSMALEEYLV 30 (179)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHh
Confidence 4789999999999999999999999986
|
| >1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A* | Back alignment and structure |
|---|
Probab=97.96 E-value=6.3e-06 Score=67.40 Aligned_cols=31 Identities=23% Similarity=0.323 Sum_probs=25.0
Q ss_pred cccccCCCcEEEEECCCCCcHHHHHHHHHHHh
Q 021362 100 LASNVNVKHIVGLAGPPGAGKSTLAAEVVRRI 131 (313)
Q Consensus 100 vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~ 131 (313)
..+++.+| +.+|+|||||||||++.+|.-.+
T Consensus 17 ~~i~f~~g-~~~I~G~NGsGKStil~Ai~~~l 47 (149)
T 1f2t_A 17 TVVEFKEG-INLIIGQNGSGKSSLLDAILVGL 47 (149)
T ss_dssp EEEECCSE-EEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEcCCC-eEEEECCCCCCHHHHHHHHHHHH
Confidence 33445554 89999999999999999998655
|
| >1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A* | Back alignment and structure |
|---|
Probab=97.96 E-value=2.5e-06 Score=73.43 Aligned_cols=35 Identities=26% Similarity=0.291 Sum_probs=31.6
Q ss_pred cccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCc
Q 021362 102 SNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA 139 (313)
Q Consensus 102 l~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G 139 (313)
+.+.+|.+++|.|++||||||+++.|++.+. |..|
T Consensus 20 ~~~~~~~~i~~~G~~GsGKsT~~~~l~~~l~---~~~g 54 (211)
T 1m7g_A 20 LRNQRGLTIWLTGLSASGKSTLAVELEHQLV---RDRR 54 (211)
T ss_dssp HHTSSCEEEEEECSTTSSHHHHHHHHHHHHH---HHHC
T ss_pred ccCCCCCEEEEECCCCCCHHHHHHHHHHHhc---cccC
Confidence 5678999999999999999999999999996 5666
|
| >1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=97.96 E-value=1.2e-06 Score=80.93 Aligned_cols=53 Identities=26% Similarity=0.443 Sum_probs=45.1
Q ss_pred ccceEEccccccccccccccccccCCCcE--EEEECCCCCcHHHHHHHHHHHhcccCCCCce
Q 021362 81 RCMDEVYDALAQRLLPTSALASNVNVKHI--VGLAGPPGAGKSTLAAEVVRRINKIWPQKAS 140 (313)
Q Consensus 81 ~~l~~~y~~~~~~~~~L~~vsl~i~~Gei--v~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~ 140 (313)
++++..||... +++.++..+..|++ +.|.||+|+||||+++++++.+. +..+.
T Consensus 22 ~~~~~~~g~~~----~~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l~---~~~~~ 76 (340)
T 1sxj_C 22 ETLDEVYGQNE----VITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIY---GKNYS 76 (340)
T ss_dssp SSGGGCCSCHH----HHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHHH---TTSHH
T ss_pred CcHHHhcCcHH----HHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHc---CCCcc
Confidence 45666777666 88999999999998 99999999999999999999986 65544
|
| >2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A* | Back alignment and structure |
|---|
Probab=97.94 E-value=3.4e-06 Score=71.49 Aligned_cols=23 Identities=39% Similarity=0.485 Sum_probs=21.5
Q ss_pred EEEEECCCCCcHHHHHHHHHHHh
Q 021362 109 IVGLAGPPGAGKSTLAAEVVRRI 131 (313)
Q Consensus 109 iv~l~GpNGsGKSTLlk~l~gl~ 131 (313)
.++|+|+||||||||++.++|..
T Consensus 7 kv~lvG~~g~GKSTLl~~l~~~~ 29 (199)
T 2f9l_A 7 KVVLIGDSGVGKSNLLSRFTRNE 29 (199)
T ss_dssp EEEEESSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 58999999999999999999974
|
| >3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A | Back alignment and structure |
|---|
Probab=97.94 E-value=0.00011 Score=59.90 Aligned_cols=78 Identities=17% Similarity=0.075 Sum_probs=44.1
Q ss_pred ceEEEEcCCccccChhhHHHHHhhcc---ceEEEEcChHHHHHHHhhcccc-cCCchHHHHHHHHh-cCCchhHHhhhcc
Q 021362 227 HKVVIVDGNYLFLDGGVWKDVSSMFD---EKWFIEVDLDTAMQRVLKRHIS-TGKPPDVAKWRIEY-NDRPNAELIMKSK 301 (313)
Q Consensus 227 ar~Li~d~~~lllDE~~~~~l~~l~~---~~i~vtHd~~~~~~rv~griv~-~G~~~ev~~~~~~~-~~~~~~~~i~~~~ 301 (313)
...++.|+- .+....+.+.+... ..|+++-+.+.+.+|+.+|--. .+...+-+..++.. ... -..+..
T Consensus 78 ~~~vi~dg~---~~~~~~~~l~~~~~~~~~~i~l~~~~~~~~~R~~~R~~~~~~~~~~~~~~r~~~~~~~----~~~~~~ 150 (179)
T 3lw7_A 78 HDLVVFDGV---RSLAEVEEFKRLLGDSVYIVAVHSPPKIRYKRMIERLRSDDSKEISELIRRDREELKL----GIGEVI 150 (179)
T ss_dssp CSCEEEECC---CCHHHHHHHHHHHCSCEEEEEEECCHHHHHHHHHTCC----CCCHHHHHHHHHHHHHH----THHHHH
T ss_pred CCeEEEeCC---CCHHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHhccCCCCcchHHHHHHHHHhhhcc----ChHhHH
Confidence 455777773 55555566666654 4579999999998888755321 12222323333221 111 133445
Q ss_pred cCccEEeecC
Q 021362 302 KNADLVIKSI 311 (313)
Q Consensus 302 ~~ad~ii~~~ 311 (313)
..||++|++.
T Consensus 151 ~~ad~vId~~ 160 (179)
T 3lw7_A 151 AMADYIITND 160 (179)
T ss_dssp HTCSEEEECC
T ss_pred HhCCEEEECC
Confidence 6789998865
|
| >2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=97.92 E-value=6.4e-06 Score=71.80 Aligned_cols=37 Identities=19% Similarity=0.439 Sum_probs=29.5
Q ss_pred ccccc-ccccCCCcEEEEECCCCCcHHHHHHHH-HHHhc
Q 021362 96 PTSAL-ASNVNVKHIVGLAGPPGAGKSTLAAEV-VRRIN 132 (313)
Q Consensus 96 ~L~~v-sl~i~~Geiv~l~GpNGsGKSTLlk~l-~gl~~ 132 (313)
.|+.+ .--+++|++++|+||||||||||+..+ .+..+
T Consensus 11 ~LD~~l~gGl~~G~~~~i~G~~GsGKTtl~~~~~~~~~~ 49 (247)
T 2dr3_A 11 GVDEILHGGIPERNVVLLSGGPGTGKTIFSQQFLWNGLK 49 (247)
T ss_dssp THHHHTTTSEETTCEEEEEECTTSSHHHHHHHHHHHHHH
T ss_pred hHHHHcCCCCCCCcEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 56666 667899999999999999999996655 44443
|
| >2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=97.86 E-value=3.5e-05 Score=65.72 Aligned_cols=27 Identities=26% Similarity=0.495 Sum_probs=23.8
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHHHhc
Q 021362 106 VKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 106 ~Geiv~l~GpNGsGKSTLlk~l~gl~~ 132 (313)
..-++||.|+.||||||+.+.|+..+.
T Consensus 11 ~~~iIgltG~~GSGKSTva~~L~~~lg 37 (192)
T 2grj_A 11 HHMVIGVTGKIGTGKSTVCEILKNKYG 37 (192)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHHHC
T ss_pred cceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 446899999999999999999998763
|
| >2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=97.85 E-value=1.1e-05 Score=67.80 Aligned_cols=32 Identities=28% Similarity=0.467 Sum_probs=28.3
Q ss_pred ccccCCCcEEEEECCCCCcHHHHHHHHHHHhc
Q 021362 101 ASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 101 sl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~ 132 (313)
.+...+|.+++|+|++||||||+++.|++.+.
T Consensus 7 ~~~~~~~~~i~l~G~~GsGKsT~~~~L~~~l~ 38 (186)
T 2yvu_A 7 YKCIEKGIVVWLTGLPGSGKTTIATRLADLLQ 38 (186)
T ss_dssp -CCCSCCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred ccccCCCcEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 34557899999999999999999999999986
|
| >3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=97.81 E-value=7e-05 Score=62.48 Aligned_cols=26 Identities=23% Similarity=0.367 Sum_probs=23.6
Q ss_pred CcEEEEECCCCCcHHHHHHHHHHHhc
Q 021362 107 KHIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 107 Geiv~l~GpNGsGKSTLlk~l~gl~~ 132 (313)
+.++.|+|++||||||+.+.|+..+.
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l~ 30 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLTK 30 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhC
Confidence 56899999999999999999998774
|
| >3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A* | Back alignment and structure |
|---|
Probab=97.81 E-value=5.8e-06 Score=77.23 Aligned_cols=56 Identities=11% Similarity=0.088 Sum_probs=38.9
Q ss_pred EccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHH--HhcccCCCCceee
Q 021362 80 ARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVR--RINKIWPQKASSF 142 (313)
Q Consensus 80 ~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~g--l~~~~~p~~G~i~ 142 (313)
++++.+.|+... ...+|++++++++ .++|+|++|||||||++.|.| +++ +.+|.+.
T Consensus 11 l~~~~~~~~~~~-~~~~l~~i~~~lp---~I~vvG~~~sGKSSLln~l~g~~~lp---~~~~~vT 68 (360)
T 3t34_A 11 IQRACTALGDHG-DSSALPTLWDSLP---AIAVVGGQSSGKSSVLESIVGKDFLP---RGSGIVT 68 (360)
T ss_dssp TTTTTTSCSSCC-SSCCC----CCCC---EEEEECBTTSSHHHHHHHHHTSCCSC---CCSSSCC
T ss_pred HHHHHHhhCccc-cccccccccccCC---EEEEECCCCCcHHHHHHHHhCCCcCC---CCCCccc
Confidence 456666776421 1238999999998 899999999999999999999 555 5556554
|
| >1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=97.80 E-value=7e-06 Score=78.53 Aligned_cols=46 Identities=17% Similarity=0.355 Sum_probs=38.1
Q ss_pred EEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhc
Q 021362 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 77 ~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~ 132 (313)
-|+++|+ +.|++.. .+++.+|++++|+||||||||||+++|++++.
T Consensus 6 ~l~~~~~-~~~~~~~---------~~~~~~~~~~~i~G~nG~GKstll~ai~~~~~ 51 (430)
T 1w1w_A 6 GLELSNF-KSYRGVT---------KVGFGESNFTSIIGPNGSGKSNMMDAISFVLG 51 (430)
T ss_dssp EEEEESC-SSCCSEE---------EEECTTCSEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred EEEEeCE-EEECCce---------eEEecCCCEEEEECCCCCCHHHHHHHHHhhhc
Confidence 3788899 7886422 13467899999999999999999999999986
|
| >1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=97.74 E-value=1.8e-05 Score=66.53 Aligned_cols=32 Identities=19% Similarity=0.303 Sum_probs=27.0
Q ss_pred ccccccCCCcEEEEECCCCCcHHHHHHHHHHH
Q 021362 99 ALASNVNVKHIVGLAGPPGAGKSTLAAEVVRR 130 (313)
Q Consensus 99 ~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl 130 (313)
++|++..+|.+++|+|++||||||+.+.|+..
T Consensus 2 ~~~~~~~~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 2 PGSMEQPKGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp ----CCCSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CcCcCCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 57888999999999999999999999999987
|
| >2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.73 E-value=4e-06 Score=78.61 Aligned_cols=46 Identities=17% Similarity=0.125 Sum_probs=37.5
Q ss_pred EEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhc
Q 021362 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 77 ~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~ 132 (313)
.+.+.++.+.|+.+. ++++++|+| +|+|++|+|||||++.|.|...
T Consensus 17 ~v~~~~l~~~~~~k~----~~~~~~~~I------~vvG~~g~GKSTLln~L~~~~~ 62 (361)
T 2qag_A 17 YVGFANLPNQVHRKS----VKKGFEFTL------MVVGESGLGKSTLINSLFLTDL 62 (361)
T ss_dssp ----CCHHHHHHTHH----HHHCCEECE------EECCCTTSCHHHHHHHHTTCCC
T ss_pred eEEeccchHHhCCee----ecCCCCEEE------EEEcCCCCCHHHHHHHHhCCCC
Confidence 588999999998776 889999887 9999999999999999988653
|
| >2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax} | Back alignment and structure |
|---|
Probab=97.70 E-value=1.7e-05 Score=67.72 Aligned_cols=30 Identities=27% Similarity=0.434 Sum_probs=26.5
Q ss_pred ccCCCcEEEEECCCCCcHHHHHHHHHHHhc
Q 021362 103 NVNVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 103 ~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~ 132 (313)
...+|.+++|+||+|||||||++.|+..++
T Consensus 8 ~~~~~~~i~l~G~sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 8 HMARIPPLVVCGPSGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp -CCCCCCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred ccccCCEEEEECCCCCCHHHHHHHHHHhCc
Confidence 457899999999999999999999998773
|
| >3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B* | Back alignment and structure |
|---|
Probab=97.67 E-value=1.2e-05 Score=75.48 Aligned_cols=58 Identities=12% Similarity=0.048 Sum_probs=45.7
Q ss_pred CCCCCCcCCCcch------hhhhhccC-ceEEEEcCCccccCh----hhHHHHHhhcc--ceEEEEcChHH
Q 021362 206 APSFDHGVGDPVE------DDILVGLQ-HKVVIVDGNYLFLDG----GVWKDVSSMFD--EKWFIEVDLDT 263 (313)
Q Consensus 206 ~~~LSgG~kqRv~------ia~al~~~-ar~Li~d~~~lllDE----~~~~~l~~l~~--~~i~vtHd~~~ 263 (313)
+..|||||+||++ +|++++.+ +++|++|+++..||. .+++.|.++.. .++++||+++.
T Consensus 278 ~~~lS~G~~~~~~lal~la~a~~l~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~vi~~th~~~~ 348 (371)
T 3auy_A 278 IDNLSGGEQIAVALSLRLAIANALIGNRVECIILDEPTVYLDENRRAKLAEIFRKVKSIPQMIIITHHREL 348 (371)
T ss_dssp GGGSCHHHHHHHHHHHHHHHHHHHHSSCCSEEEEESTTTTCCHHHHHHHHHHHHHCCSCSEEEEEESCGGG
T ss_pred hHhcCHHHHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCCcCCHHHHHHHHHHHHHhccCCeEEEEEChHHH
Confidence 4589999999884 56777888 999999999999999 45555555433 35799999874
|
| >3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A* | Back alignment and structure |
|---|
Probab=97.66 E-value=3.6e-05 Score=66.09 Aligned_cols=32 Identities=22% Similarity=0.295 Sum_probs=25.7
Q ss_pred cccccCCCcEEEEECCCCCcHHHHHHHHHHHhc
Q 021362 100 LASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 100 vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~ 132 (313)
.++++.+ .+.+|+|||||||||++.+|.-.+.
T Consensus 17 ~~i~f~~-~~~~I~G~NgsGKStil~ai~~~l~ 48 (203)
T 3qks_A 17 TVVEFKE-GINLIIGQNGSGKSSLLDAILVGLY 48 (203)
T ss_dssp EEEECCS-EEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred eEEEeCC-CeEEEEcCCCCCHHHHHHHHHHHhc
Confidence 3445555 4899999999999999999987664
|
| >3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1} | Back alignment and structure |
|---|
Probab=97.59 E-value=0.00014 Score=66.73 Aligned_cols=36 Identities=17% Similarity=0.317 Sum_probs=31.8
Q ss_pred cccccccccCCCcEEEEECCCCCcHHHHHHHHHHHh
Q 021362 96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRI 131 (313)
Q Consensus 96 ~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~ 131 (313)
.|+.+.--+.+|+++.|.|++|+|||||+..++...
T Consensus 57 ~LD~~lgGl~~G~l~li~G~pG~GKTtl~l~ia~~~ 92 (315)
T 3bh0_A 57 ELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKNM 92 (315)
T ss_dssp HHHHHHSSBCTTCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred HHHhhcCCCCCCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence 677777679999999999999999999998888655
|
| >4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori} | Back alignment and structure |
|---|
Probab=97.58 E-value=5.2e-05 Score=70.40 Aligned_cols=37 Identities=22% Similarity=0.270 Sum_probs=32.3
Q ss_pred cccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhc
Q 021362 96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 96 ~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~ 132 (313)
.|+.+.--+.+|+++.|.|++|+|||||+..++....
T Consensus 35 ~LD~~~gGl~~G~LiiIaG~pG~GKTt~al~ia~~~a 71 (338)
T 4a1f_A 35 QLDNYTSGFNKGSLVIIGARPSMGKTSLMMNMVLSAL 71 (338)
T ss_dssp HHHHHHCSBCTTCEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred HHHHHhcCCCCCcEEEEEeCCCCCHHHHHHHHHHHHH
Confidence 5666666799999999999999999999999988764
|
| >3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=97.55 E-value=3.8e-05 Score=71.80 Aligned_cols=36 Identities=22% Similarity=0.285 Sum_probs=31.4
Q ss_pred ccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCcee
Q 021362 103 NVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS 141 (313)
Q Consensus 103 ~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i 141 (313)
-+++|+++.|.||||||||||+..+++... +..|.+
T Consensus 57 Gi~~G~i~~I~GppGsGKSTLal~la~~~~---~~gg~V 92 (356)
T 3hr8_A 57 GYPRGRIVEIFGQESSGKTTLALHAIAEAQ---KMGGVA 92 (356)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHHHHH---HTTCCE
T ss_pred CccCCcEEEEECCCCCCHHHHHHHHHHHHH---hcCCeE
Confidence 478999999999999999999999999986 555543
|
| >1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A* | Back alignment and structure |
|---|
Probab=97.54 E-value=1.7e-05 Score=67.18 Aligned_cols=41 Identities=20% Similarity=0.183 Sum_probs=30.3
Q ss_pred EEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHH
Q 021362 85 EVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVR 129 (313)
Q Consensus 85 ~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~g 129 (313)
..|++.. .+++++++..+++. ++|+|++|+|||||++.+.+
T Consensus 7 ~~~~~~~---~~l~~~~~~~~~~k-i~lvG~~~vGKSsLi~~l~~ 47 (198)
T 1f6b_A 7 WIYSGFS---SVLQFLGLYKKTGK-LVFLGLDNAGKTTLLHMLKD 47 (198)
T ss_dssp ------C---HHHHHHTCTTCCEE-EEEEEETTSSHHHHHHHHSC
T ss_pred HHHHHHH---HHHHHhhccCCCcE-EEEECCCCCCHHHHHHHHhc
Confidence 4455432 28899999988875 68999999999999999976
|
| >3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=97.52 E-value=5.3e-05 Score=63.20 Aligned_cols=28 Identities=39% Similarity=0.684 Sum_probs=24.5
Q ss_pred CCCcEEEEECCCCCcHHHHHHHHHHHhc
Q 021362 105 NVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 105 ~~Geiv~l~GpNGsGKSTLlk~l~gl~~ 132 (313)
.+|.+++|+|++||||||+.+.|+..+.
T Consensus 2 ~~g~~I~l~G~~GsGKST~~~~La~~l~ 29 (186)
T 3cm0_A 2 DVGQAVIFLGPPGAGKGTQASRLAQELG 29 (186)
T ss_dssp -CEEEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4688999999999999999999997663
|
| >1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=97.47 E-value=7.4e-05 Score=65.28 Aligned_cols=29 Identities=24% Similarity=0.405 Sum_probs=25.8
Q ss_pred cCCCcEEEEECCCCCcHHHHHHHHHHHhc
Q 021362 104 VNVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 104 i~~Geiv~l~GpNGsGKSTLlk~l~gl~~ 132 (313)
-.+|.+++|+|++||||||+++.|++.+.
T Consensus 13 ~~~~~~i~i~G~~gsGKst~~~~l~~~lg 41 (236)
T 1q3t_A 13 KMKTIQIAIDGPASSGKSTVAKIIAKDFG 41 (236)
T ss_dssp -CCCCEEEEECSSCSSHHHHHHHHHHHHC
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHcC
Confidence 46789999999999999999999999764
|
| >1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X | Back alignment and structure |
|---|
Probab=97.45 E-value=4.3e-05 Score=69.67 Aligned_cols=27 Identities=26% Similarity=0.459 Sum_probs=23.8
Q ss_pred CCCcEEEEECCCCCcHHHHHHHHHHHh
Q 021362 105 NVKHIVGLAGPPGAGKSTLAAEVVRRI 131 (313)
Q Consensus 105 ~~Geiv~l~GpNGsGKSTLlk~l~gl~ 131 (313)
.++.+++|+|++|+|||||++.|.|..
T Consensus 6 ~r~~~VaIvG~~nvGKSTLln~L~g~~ 32 (301)
T 1ega_A 6 SYCGFIAIVGRPNVGKSTLLNKLLGQK 32 (301)
T ss_dssp CEEEEEEEECSSSSSHHHHHHHHHTCS
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHCCC
Confidence 445689999999999999999999864
|
| >2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.43 E-value=6.1e-05 Score=71.30 Aligned_cols=40 Identities=23% Similarity=0.385 Sum_probs=32.6
Q ss_pred ccCCCcEEEEECCCCCcHHHHHHHHHHH-----------hcccCCCCceeecCC
Q 021362 103 NVNVKHIVGLAGPPGAGKSTLAAEVVRR-----------INKIWPQKASSFDSQ 145 (313)
Q Consensus 103 ~i~~Geiv~l~GpNGsGKSTLlk~l~gl-----------~~~~~p~~G~i~~~g 145 (313)
.+..|..++|+|+||+|||||++.|+|. +. |..|.+.+.+
T Consensus 18 ~i~~~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~---p~~g~v~v~~ 68 (396)
T 2ohf_A 18 RFGTSLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTID---PNESRVPVPD 68 (396)
T ss_dssp CSSSCCCEEEECCSSSSHHHHHHHHHC-------------C---CSEEEEECCC
T ss_pred hccCCCEEEEECCCCCCHHHHHHHHHCCCccccCCCccccC---ceeEEEEECC
Confidence 4577889999999999999999999987 44 7778777655
|
| >2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A | Back alignment and structure |
|---|
Probab=97.43 E-value=5.7e-05 Score=62.45 Aligned_cols=27 Identities=37% Similarity=0.429 Sum_probs=23.3
Q ss_pred CCCcEEEEECCCCCcHHHHHHHHHHHh
Q 021362 105 NVKHIVGLAGPPGAGKSTLAAEVVRRI 131 (313)
Q Consensus 105 ~~Geiv~l~GpNGsGKSTLlk~l~gl~ 131 (313)
.+|..++|+|++|+|||||++.++|..
T Consensus 2 ~~~~ki~ivG~~g~GKStLl~~l~~~~ 28 (172)
T 2gj8_A 2 SHGMKVVIAGRPNAGKSSLLNALAGRE 28 (172)
T ss_dssp --CEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 367889999999999999999999864
|
| >4i1u_A Dephospho-COA kinase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.05A {Burkholderia vietnamiensis} PDB: 4i1v_A* | Back alignment and structure |
|---|
Probab=97.42 E-value=0.002 Score=55.59 Aligned_cols=73 Identities=21% Similarity=0.195 Sum_probs=49.8
Q ss_pred ceEEEEcCCccccChhhHHHHHhhccceEEEEcChHHHHHHHhhcccccCCchHHHHHHHHhcCCchhHHhhhcccCccE
Q 021362 227 HKVVIVDGNYLFLDGGVWKDVSSMFDEKWFIEVDLDTAMQRVLKRHISTGKPPDVAKWRIEYNDRPNAELIMKSKKNADL 306 (313)
Q Consensus 227 ar~Li~d~~~lllDE~~~~~l~~l~~~~i~vtHd~~~~~~rv~griv~~G~~~ev~~~~~~~~~~~~~~~i~~~~~~ad~ 306 (313)
..+++.|-|+++=. .-+..+++.+|+|+-+.+...+|+..|. |...+-+..++.. .++..+ ....||+
T Consensus 112 ~~~vv~d~pLL~E~----~~~~~~~D~vi~V~ap~e~r~~Rl~~Rd---g~s~eea~~ri~~-Q~~~ee----k~~~AD~ 179 (210)
T 4i1u_A 112 GPYVIFVVPLLVES----RNWKARCDRVLVVDCPVDTQIARVMQRN---GFTREQVEAIIAR-QATREA----RLAAADD 179 (210)
T ss_dssp SSSEEEECTTCTTC----HHHHHHCSEEEEEECCHHHHHHHHHHHH---CCCHHHHHHHHHH-SCCHHH----HHHTCSE
T ss_pred CCEEEEEEeccccc----CCccccCCeEEEEECCHHHHHHHHHhcC---CCCHHHHHHHHHH-cCChHH----HHHhCCE
Confidence 34577787765421 2345678999999999999988887554 6666666665543 345433 3478999
Q ss_pred EeecC
Q 021362 307 VIKSI 311 (313)
Q Consensus 307 ii~~~ 311 (313)
||+|.
T Consensus 180 VIdN~ 184 (210)
T 4i1u_A 180 VIVND 184 (210)
T ss_dssp EEECS
T ss_pred EEECC
Confidence 99886
|
| >3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A* | Back alignment and structure |
|---|
Probab=97.41 E-value=8.8e-05 Score=60.75 Aligned_cols=24 Identities=33% Similarity=0.493 Sum_probs=22.3
Q ss_pred EEEEECCCCCcHHHHHHHHHHHhc
Q 021362 109 IVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 109 iv~l~GpNGsGKSTLlk~l~gl~~ 132 (313)
+++|.|++||||||+.+.|+..+.
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l~ 26 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKELK 26 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 789999999999999999998874
|
| >2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae} | Back alignment and structure |
|---|
Probab=97.40 E-value=6.2e-05 Score=66.65 Aligned_cols=36 Identities=22% Similarity=0.249 Sum_probs=30.4
Q ss_pred cccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhc
Q 021362 96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 96 ~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~ 132 (313)
++.+.. ...++.++.|+|++||||||+.+.|+..+.
T Consensus 22 ~~~~~~-~~~~~~~i~l~G~~GsGKSTla~~L~~~l~ 57 (253)
T 2p5t_B 22 LTRGKK-SSKQPIAILLGGQSGAGKTTIHRIKQKEFQ 57 (253)
T ss_dssp HHTTCC-CCSSCEEEEEESCGGGTTHHHHHHHHHHTT
T ss_pred HHccCC-cccCCeEEEEECCCCCCHHHHHHHHHHhcC
Confidence 444544 677899999999999999999999999874
|
| >2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A* | Back alignment and structure |
|---|
Probab=97.40 E-value=9.3e-05 Score=74.77 Aligned_cols=43 Identities=19% Similarity=0.329 Sum_probs=33.1
Q ss_pred ccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCC
Q 021362 101 ASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQ 145 (313)
Q Consensus 101 sl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g 145 (313)
+++++++..++|+|++|+|||||++.|++.... .+..|+| .+|
T Consensus 3 s~~~~~~~~i~IiG~~gaGKTTLl~~L~~~~~~-~~~~G~V-~~g 45 (665)
T 2dy1_A 3 TEGGAMIRTVALVGHAGSGKTTLTEALLYKTGA-KERRGRV-EEG 45 (665)
T ss_dssp ---CCCEEEEEEEESTTSSHHHHHHHHHHHTTS-SSSCCCG-GGT
T ss_pred CCccCCCcEEEEECCCCChHHHHHHHHHHhcCC-CCcccee-cCC
Confidence 457889999999999999999999999988751 1367877 444
|
| >1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A | Back alignment and structure |
|---|
Probab=97.40 E-value=9.2e-05 Score=62.16 Aligned_cols=25 Identities=24% Similarity=0.445 Sum_probs=23.3
Q ss_pred cEEEEECCCCCcHHHHHHHHHHHhc
Q 021362 108 HIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 108 eiv~l~GpNGsGKSTLlk~l~gl~~ 132 (313)
.+++|+|++|||||||++.|.+.+.
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~~l~ 31 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIPALC 31 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHHhcc
Confidence 5899999999999999999999875
|
| >1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B* | Back alignment and structure |
|---|
Probab=97.39 E-value=8.4e-05 Score=62.41 Aligned_cols=34 Identities=21% Similarity=0.098 Sum_probs=20.7
Q ss_pred cccccccccCCCcEEEEECCCCCcHHHHHHHHHHH
Q 021362 96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRR 130 (313)
Q Consensus 96 ~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl 130 (313)
++++++++.++. .++|+|++|+|||||++.+.+-
T Consensus 13 ~l~~~~~~~~~~-ki~~vG~~~vGKSsli~~l~~~ 46 (190)
T 1m2o_B 13 VLASLGLWNKHG-KLLFLGLDNAGKTTLLHMLKND 46 (190)
T ss_dssp -----------C-EEEEEESTTSSHHHHHHHHHHS
T ss_pred HHHHhhccCCcc-EEEEECCCCCCHHHHHHHHhcC
Confidence 788899988777 6689999999999999999873
|
| >1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=97.38 E-value=9.9e-05 Score=65.08 Aligned_cols=35 Identities=29% Similarity=0.489 Sum_probs=25.9
Q ss_pred cccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhc
Q 021362 96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 96 ~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~ 132 (313)
.++++++.+.+| +.|.||+|+|||||++.|++...
T Consensus 36 ~~~~~~~~~~~~--vll~G~~GtGKT~la~~la~~~~ 70 (257)
T 1lv7_A 36 RFQKLGGKIPKG--VLMVGPPGTGKTLLAKAIAGEAK 70 (257)
T ss_dssp GC-----CCCCE--EEEECCTTSCHHHHHHHHHHHHT
T ss_pred HHHHcCCCCCCe--EEEECcCCCCHHHHHHHHHHHcC
Confidence 455566666666 78999999999999999999875
|
| >3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B* | Back alignment and structure |
|---|
Probab=97.34 E-value=0.00013 Score=68.44 Aligned_cols=33 Identities=24% Similarity=0.309 Sum_probs=26.8
Q ss_pred cccccccccCCCcEEEEECCCCCcHHHHHHHHHH
Q 021362 96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVR 129 (313)
Q Consensus 96 ~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~g 129 (313)
.+++..+++.+| +.+|.|||||||||++..|.=
T Consensus 15 ~~~~~~i~f~~g-l~vi~G~NGaGKT~ileAI~~ 47 (371)
T 3auy_A 15 SHVNSRIKFEKG-IVAIIGENGSGKSSIFEAVFF 47 (371)
T ss_dssp TEEEEEEECCSE-EEEEEECTTSSHHHHHHHHHH
T ss_pred cccceEEecCCC-eEEEECCCCCCHHHHHHHHHH
Confidence 345556666665 889999999999999999985
|
| >1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A* | Back alignment and structure |
|---|
Probab=97.31 E-value=0.00014 Score=60.07 Aligned_cols=26 Identities=23% Similarity=0.308 Sum_probs=23.7
Q ss_pred CcEEEEECCCCCcHHHHHHHHHHHhc
Q 021362 107 KHIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 107 Geiv~l~GpNGsGKSTLlk~l~gl~~ 132 (313)
|.++.|.|++||||||+.+.|+..+.
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La~~l~ 28 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 57899999999999999999999874
|
| >2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A* | Back alignment and structure |
|---|
Probab=97.28 E-value=0.00011 Score=60.10 Aligned_cols=24 Identities=29% Similarity=0.401 Sum_probs=21.5
Q ss_pred cEEEEECCCCCcHHHHHHHHHHHh
Q 021362 108 HIVGLAGPPGAGKSTLAAEVVRRI 131 (313)
Q Consensus 108 eiv~l~GpNGsGKSTLlk~l~gl~ 131 (313)
-.++|+|++|+|||||++.++|..
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~~~ 27 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTGEN 27 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCCS
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC
Confidence 368999999999999999999864
|
| >2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus} | Back alignment and structure |
|---|
Probab=97.25 E-value=0.00019 Score=60.02 Aligned_cols=28 Identities=21% Similarity=0.475 Sum_probs=25.0
Q ss_pred CCCcEEEEECCCCCcHHHHHHHHHHHhc
Q 021362 105 NVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 105 ~~Geiv~l~GpNGsGKSTLlk~l~gl~~ 132 (313)
.++.++.|.|++||||||+.+.|+..+.
T Consensus 3 ~~~~~I~l~G~~GsGKST~~~~L~~~l~ 30 (193)
T 2rhm_A 3 QTPALIIVTGHPATGKTTLSQALATGLR 30 (193)
T ss_dssp SCCEEEEEEESTTSSHHHHHHHHHHHHT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHcC
Confidence 5678999999999999999999998764
|
| >1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A | Back alignment and structure |
|---|
Probab=97.24 E-value=0.00019 Score=59.69 Aligned_cols=27 Identities=22% Similarity=0.444 Sum_probs=23.7
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHHHhc
Q 021362 106 VKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 106 ~Geiv~l~GpNGsGKSTLlk~l~gl~~ 132 (313)
+|.++.|.|++||||||+.+.|+..+.
T Consensus 2 ~~~~I~i~G~~GsGKsT~~~~L~~~l~ 28 (192)
T 1kht_A 2 KNKVVVVTGVPGVGSTTSSQLAMDNLR 28 (192)
T ss_dssp -CCEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 367899999999999999999998774
|
| >3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A | Back alignment and structure |
|---|
Probab=97.23 E-value=0.00018 Score=59.74 Aligned_cols=29 Identities=31% Similarity=0.489 Sum_probs=25.4
Q ss_pred cCCCcEEEEECCCCCcHHHHHHHHHHHhc
Q 021362 104 VNVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 104 i~~Geiv~l~GpNGsGKSTLlk~l~gl~~ 132 (313)
+.++.++.|.|++||||||+.+.|+..+.
T Consensus 8 ~~~~~~i~i~G~~GsGKst~~~~l~~~~~ 36 (180)
T 3iij_A 8 FMLLPNILLTGTPGVGKTTLGKELASKSG 36 (180)
T ss_dssp TCCCCCEEEECSTTSSHHHHHHHHHHHHC
T ss_pred cccCCeEEEEeCCCCCHHHHHHHHHHHhC
Confidence 45678899999999999999999997764
|
| >2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A | Back alignment and structure |
|---|
Probab=97.23 E-value=0.00018 Score=63.71 Aligned_cols=25 Identities=20% Similarity=0.412 Sum_probs=22.6
Q ss_pred cEEEEECCCCCcHHHHHHHHHHHhc
Q 021362 108 HIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 108 eiv~l~GpNGsGKSTLlk~l~gl~~ 132 (313)
.+++|+||+|||||||.+.|++.+.
T Consensus 2 ~li~I~G~~GSGKSTla~~La~~~~ 26 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQETG 26 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred eEEEEECCCCcCHHHHHHHHHhcCC
Confidence 3689999999999999999999774
|
| >1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A | Back alignment and structure |
|---|
Probab=97.22 E-value=0.0002 Score=61.42 Aligned_cols=24 Identities=42% Similarity=0.601 Sum_probs=22.1
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHH
Q 021362 106 VKHIVGLAGPPGAGKSTLAAEVVR 129 (313)
Q Consensus 106 ~Geiv~l~GpNGsGKSTLlk~l~g 129 (313)
.+-+++|.|++||||||+++.|+.
T Consensus 3 ~~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 3 LRYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 456899999999999999999998
|
| >4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A | Back alignment and structure |
|---|
Probab=97.21 E-value=0.00028 Score=66.37 Aligned_cols=37 Identities=24% Similarity=0.165 Sum_probs=31.2
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCC
Q 021362 106 VKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQ 145 (313)
Q Consensus 106 ~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g 145 (313)
.+..++|+||+|||||||++.|++... +..+.|.+.+
T Consensus 34 ~~~~~~i~G~~G~GKs~~~~~~~~~~~---~~~~~~~~~D 70 (392)
T 4ag6_A 34 TNSNWTILAKPGAGKSFTAKMLLLREY---MQGSRVIIID 70 (392)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHHH---TTTCCEEEEE
T ss_pred ccCceEEEcCCCCCHHHHHHHHHHHHH---HCCCEEEEEe
Confidence 566789999999999999999999887 7777776544
|
| >2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ... | Back alignment and structure |
|---|
Probab=97.21 E-value=0.00017 Score=67.19 Aligned_cols=30 Identities=23% Similarity=0.449 Sum_probs=26.7
Q ss_pred ccCCCcEEEEECCCCCcHHHHHHHHHHHhc
Q 021362 103 NVNVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 103 ~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~ 132 (313)
-+++|+++.|.||||||||||+..++....
T Consensus 57 Gl~~G~iv~I~G~pGsGKTtLal~la~~~~ 86 (349)
T 2zr9_A 57 GLPRGRVIEIYGPESSGKTTVALHAVANAQ 86 (349)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 578999999999999999999988887664
|
| >3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A | Back alignment and structure |
|---|
Probab=97.21 E-value=0.00018 Score=68.97 Aligned_cols=33 Identities=24% Similarity=0.319 Sum_probs=28.4
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCcee
Q 021362 106 VKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS 141 (313)
Q Consensus 106 ~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i 141 (313)
++.+++++|||||||||++..|++.+. +..++|
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~---~~G~kV 128 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYK---KRGYKV 128 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHH---HTTCCE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH---HcCCeE
Confidence 588999999999999999999999997 544433
|
| >1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1 | Back alignment and structure |
|---|
Probab=97.20 E-value=0.00017 Score=69.07 Aligned_cols=24 Identities=33% Similarity=0.520 Sum_probs=22.2
Q ss_pred cEEEEECCCCCcHHHHHHHHHHHh
Q 021362 108 HIVGLAGPPGAGKSTLAAEVVRRI 131 (313)
Q Consensus 108 eiv~l~GpNGsGKSTLlk~l~gl~ 131 (313)
-.++|+|+||+|||||++.|+|..
T Consensus 181 ~kvaivG~~gvGKSTLln~l~g~~ 204 (439)
T 1mky_A 181 IKVAIVGRPNVGKSTLFNAILNKE 204 (439)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTST
T ss_pred ceEEEECCCCCCHHHHHHHHhCCc
Confidence 379999999999999999999975
|
| >2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A* | Back alignment and structure |
|---|
Probab=97.20 E-value=0.00022 Score=60.06 Aligned_cols=24 Identities=38% Similarity=0.708 Sum_probs=22.4
Q ss_pred EEEEECCCCCcHHHHHHHHHHHhc
Q 021362 109 IVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 109 iv~l~GpNGsGKSTLlk~l~gl~~ 132 (313)
+++|.|++||||||+.+.|+..+.
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l~ 25 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKLG 25 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHC
T ss_pred EEEEECCCccCHHHHHHHHHHhcC
Confidence 689999999999999999999885
|
| >4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A* | Back alignment and structure |
|---|
Probab=97.19 E-value=8.8e-05 Score=66.98 Aligned_cols=42 Identities=21% Similarity=0.328 Sum_probs=32.9
Q ss_pred cccccccccCCC-----------cEEEEECCCCCcHHHHHHHHHHHhcccCCCCce
Q 021362 96 PTSALASNVNVK-----------HIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS 140 (313)
Q Consensus 96 ~L~~vsl~i~~G-----------eiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~ 140 (313)
+++.+...+..+ ..+.|.||+|+|||||+++|++.+. +..|.
T Consensus 25 ~~~~l~~~i~~~~~~~~~~~~~~~~~ll~G~~GtGKt~la~~la~~~~---~~~~~ 77 (311)
T 4fcw_A 25 AIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLF---DTEEA 77 (311)
T ss_dssp HHHHHHHHHHHHHHTCSCTTSCSEEEEEESCSSSSHHHHHHHHHHHHH---SCGGG
T ss_pred HHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCcCHHHHHHHHHHHHc---CCCcc
Confidence 555555555543 6899999999999999999999987 55554
|
| >1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2 | Back alignment and structure |
|---|
Probab=97.18 E-value=0.00019 Score=59.40 Aligned_cols=24 Identities=33% Similarity=0.499 Sum_probs=22.1
Q ss_pred EEEEECCCCCcHHHHHHHHHHHhc
Q 021362 109 IVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 109 iv~l~GpNGsGKSTLlk~l~gl~~ 132 (313)
++.|+|++||||||+.+.|+..+.
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l~ 29 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDLD 29 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHT
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcC
Confidence 588999999999999999999875
|
| >2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=97.14 E-value=0.0002 Score=59.26 Aligned_cols=23 Identities=30% Similarity=0.459 Sum_probs=21.0
Q ss_pred cEEEEECCCCCcHHHHHHHHHHH
Q 021362 108 HIVGLAGPPGAGKSTLAAEVVRR 130 (313)
Q Consensus 108 eiv~l~GpNGsGKSTLlk~l~gl 130 (313)
-.++|+|++|+|||||++.++|.
T Consensus 8 ~~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 8 YEIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 46899999999999999999984
|
| >1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A* | Back alignment and structure |
|---|
Probab=97.13 E-value=0.00011 Score=62.47 Aligned_cols=24 Identities=29% Similarity=0.559 Sum_probs=22.6
Q ss_pred EEEEECCCCCcHHHHHHHHHHHhc
Q 021362 109 IVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 109 iv~l~GpNGsGKSTLlk~l~gl~~ 132 (313)
+++|.|++||||||+++.|+..+.
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~ 25 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFR 25 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHH
Confidence 689999999999999999999885
|
| >2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E* | Back alignment and structure |
|---|
Probab=97.12 E-value=6.5e-05 Score=72.88 Aligned_cols=48 Identities=27% Similarity=0.398 Sum_probs=37.6
Q ss_pred EEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhc
Q 021362 79 EARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 79 ~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~ 132 (313)
+++++.+.|.... .++++++.+++| +.|.||+|+|||||+++|++...
T Consensus 27 ~l~e~v~~l~~~~----~~~~~g~~~p~g--vLL~GppGtGKT~Laraia~~~~ 74 (476)
T 2ce7_A 27 ELKEVVEFLKDPS----KFNRIGARMPKG--ILLVGPPGTGKTLLARAVAGEAN 74 (476)
T ss_dssp HHHHHHHHHHCTH----HHHTTTCCCCSE--EEEECCTTSSHHHHHHHHHHHHT
T ss_pred HHHHHHHHhhChH----HHhhcCCCCCCe--EEEECCCCCCHHHHHHHHHHHcC
Confidence 3445544454433 678888888888 77999999999999999999874
|
| >1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=97.11 E-value=0.00027 Score=59.53 Aligned_cols=72 Identities=19% Similarity=0.321 Sum_probs=42.4
Q ss_pred ceEEEEcCCccccChhhHHHHHhhccceEEEEcChHHHHHHHhhcccccCCchHHHHHHHHhcCCchhHHhhhcccCccE
Q 021362 227 HKVVIVDGNYLFLDGGVWKDVSSMFDEKWFIEVDLDTAMQRVLKRHISTGKPPDVAKWRIEYNDRPNAELIMKSKKNADL 306 (313)
Q Consensus 227 ar~Li~d~~~lllDE~~~~~l~~l~~~~i~vtHd~~~~~~rv~griv~~G~~~ev~~~~~~~~~~~~~~~i~~~~~~ad~ 306 (313)
.++++.|.++++-+ . +....+..++++-+.+....|+..|. |...+-+..++.. ..+.. +....||+
T Consensus 106 ~~~vi~d~~~l~~~-~----~~~~~d~~i~l~~~~e~~~~R~~~R~---~~~~~~~~~~i~~-~~~~~----~~~~~ad~ 172 (203)
T 1uf9_A 106 APLVFLEIPLLFEK-G----WEGRLHGTLLVAAPLEERVRRVMARS---GLSREEVLARERA-QMPEE----EKRKRATW 172 (203)
T ss_dssp CSEEEEECTTTTTT-T----CGGGSSEEEEECCCHHHHHHHHHTTT---CCTTHHHHHHHTT-SCCHH----HHHHHCSE
T ss_pred CCEEEEEecceecc-C----chhhCCEEEEEECCHHHHHHHHHHcC---CCCHHHHHHHHHH-CCChh----HHHHhCCE
Confidence 57888898865543 1 22345667899999999888887552 3233333344443 23322 22345788
Q ss_pred EeecC
Q 021362 307 VIKSI 311 (313)
Q Consensus 307 ii~~~ 311 (313)
+|++.
T Consensus 173 vId~~ 177 (203)
T 1uf9_A 173 VLENT 177 (203)
T ss_dssp EECCS
T ss_pred EEECC
Confidence 88764
|
| >2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B* | Back alignment and structure |
|---|
Probab=97.11 E-value=0.00014 Score=60.47 Aligned_cols=24 Identities=25% Similarity=0.491 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHHHHhc
Q 021362 109 IVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 109 iv~l~GpNGsGKSTLlk~l~gl~~ 132 (313)
.++|+|++|+|||||++.++|...
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~~~ 27 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKTKK 27 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC--
T ss_pred EEEEECCCCCCHHHHHHHHhcCCC
Confidence 579999999999999999998643
|
| >2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=97.10 E-value=0.00034 Score=59.18 Aligned_cols=27 Identities=26% Similarity=0.369 Sum_probs=24.8
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHHHhc
Q 021362 106 VKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 106 ~Geiv~l~GpNGsGKSTLlk~l~gl~~ 132 (313)
+|.+++|.|+.||||||+.+.|+..+.
T Consensus 3 ~~~~I~i~G~~GsGKsT~~~~L~~~l~ 29 (213)
T 2plr_A 3 KGVLIAFEGIDGSGKSSQATLLKDWIE 29 (213)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 477899999999999999999999885
|
| >2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A | Back alignment and structure |
|---|
Probab=97.10 E-value=0.00033 Score=58.64 Aligned_cols=29 Identities=28% Similarity=0.570 Sum_probs=25.6
Q ss_pred cCCCcEEEEECCCCCcHHHHHHHHHHHhc
Q 021362 104 VNVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 104 i~~Geiv~l~GpNGsGKSTLlk~l~gl~~ 132 (313)
..++.+++|.|+.||||||+.+.|+..+.
T Consensus 6 m~~~~~I~l~G~~GsGKsT~~~~La~~l~ 34 (196)
T 2c95_A 6 LKKTNIIFVVGGPGSGKGTQCEKIVQKYG 34 (196)
T ss_dssp HTTSCEEEEEECTTSSHHHHHHHHHHHHC
T ss_pred CcCCCEEEEECCCCCCHHHHHHHHHHHhC
Confidence 35678999999999999999999998774
|
| >2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A* | Back alignment and structure |
|---|
Probab=97.09 E-value=0.00031 Score=59.25 Aligned_cols=26 Identities=19% Similarity=0.336 Sum_probs=23.9
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHHHh
Q 021362 106 VKHIVGLAGPPGAGKSTLAAEVVRRI 131 (313)
Q Consensus 106 ~Geiv~l~GpNGsGKSTLlk~l~gl~ 131 (313)
+|-+++|.|+.||||||+.+.|+..+
T Consensus 3 ~~~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 67899999999999999999999865
|
| >3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228} | Back alignment and structure |
|---|
Probab=97.09 E-value=0.00055 Score=63.45 Aligned_cols=25 Identities=32% Similarity=0.721 Sum_probs=22.9
Q ss_pred cEEEEECCCCCcHHHHHHHHHHHhc
Q 021362 108 HIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 108 eiv~l~GpNGsGKSTLlk~l~gl~~ 132 (313)
.+++|+||+|||||||.+.|+..+.
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l~ 32 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKFN 32 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred ceEEEECCCcCcHHHHHHHHHHHcC
Confidence 4899999999999999999999874
|
| >2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.08 E-value=0.00017 Score=60.50 Aligned_cols=30 Identities=27% Similarity=0.505 Sum_probs=26.2
Q ss_pred ccCCCcEEEEECCCCCcHHHHHHHHHHHhc
Q 021362 103 NVNVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 103 ~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~ 132 (313)
.+..+.+++|.|+.||||||+.+.|+..+.
T Consensus 8 ~~~~~~~I~l~G~~GsGKsT~a~~L~~~l~ 37 (199)
T 2bwj_A 8 DLRKCKIIFIIGGPGSGKGTQCEKLVEKYG 37 (199)
T ss_dssp HHHHSCEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred ccCCCCEEEEECCCCCCHHHHHHHHHHHhC
Confidence 445678999999999999999999998774
|
| >1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10 | Back alignment and structure |
|---|
Probab=97.08 E-value=0.00034 Score=58.45 Aligned_cols=25 Identities=24% Similarity=0.270 Sum_probs=23.0
Q ss_pred cEEEEECCCCCcHHHHHHHHHHHhc
Q 021362 108 HIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 108 eiv~l~GpNGsGKSTLlk~l~gl~~ 132 (313)
.+++|+|++|||||||+..|+..++
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~~l~ 29 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVAAAV 29 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHhhH
Confidence 4799999999999999999999885
|
| >1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=97.08 E-value=0.00029 Score=57.98 Aligned_cols=22 Identities=45% Similarity=0.634 Sum_probs=20.5
Q ss_pred cEEEEECCCCCcHHHHHHHHHH
Q 021362 108 HIVGLAGPPGAGKSTLAAEVVR 129 (313)
Q Consensus 108 eiv~l~GpNGsGKSTLlk~l~g 129 (313)
.++.|.|++||||||+.+.|+.
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 4789999999999999999987
|
| >1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=97.07 E-value=0.00036 Score=58.11 Aligned_cols=27 Identities=37% Similarity=0.532 Sum_probs=23.4
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHHHhc
Q 021362 106 VKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 106 ~Geiv~l~GpNGsGKSTLlk~l~gl~~ 132 (313)
++.+++|.|++||||||+.+.|+..+.
T Consensus 2 ~~~~I~l~G~~GsGKsT~a~~L~~~~~ 28 (196)
T 1tev_A 2 KPLVVFVLGGPGAGKGTQCARIVEKYG 28 (196)
T ss_dssp -CEEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHhC
Confidence 357899999999999999999988764
|
| >2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A* | Back alignment and structure |
|---|
Probab=97.05 E-value=0.00036 Score=59.19 Aligned_cols=28 Identities=21% Similarity=0.279 Sum_probs=25.4
Q ss_pred CCCcEEEEECCCCCcHHHHHHHHHHHhc
Q 021362 105 NVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 105 ~~Geiv~l~GpNGsGKSTLlk~l~gl~~ 132 (313)
.+|.+++|.|+.||||||+.+.|+..+.
T Consensus 8 ~~~~~I~l~G~~GsGKST~~~~L~~~l~ 35 (212)
T 2wwf_A 8 KKGKFIVFEGLDRSGKSTQSKLLVEYLK 35 (212)
T ss_dssp BCSCEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred hcCCEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 5688999999999999999999998764
|
| >3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A* | Back alignment and structure |
|---|
Probab=97.04 E-value=0.00037 Score=58.89 Aligned_cols=24 Identities=38% Similarity=0.667 Sum_probs=22.5
Q ss_pred EEEEECCCCCcHHHHHHHHHHHhc
Q 021362 109 IVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 109 iv~l~GpNGsGKSTLlk~l~gl~~ 132 (313)
+++|.|++||||||+.+.|++.+.
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~lg 27 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAALG 27 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHhcC
Confidence 899999999999999999999874
|
| >3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.04 E-value=0.00034 Score=63.45 Aligned_cols=32 Identities=28% Similarity=0.427 Sum_probs=28.1
Q ss_pred ccccCCCcEEEEECCCCCcHHHHHHHHHHHhc
Q 021362 101 ASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 101 sl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~ 132 (313)
++.+.++..+.|.||+|+|||||+++|++...
T Consensus 43 ~~~~~~~~~vLL~Gp~GtGKT~la~ala~~~~ 74 (301)
T 3cf0_A 43 KFGMTPSKGVLFYGPPGCGKTLLAKAIANECQ 74 (301)
T ss_dssp HHCCCCCSEEEEECSSSSSHHHHHHHHHHHTT
T ss_pred HcCCCCCceEEEECCCCcCHHHHHHHHHHHhC
Confidence 34567889999999999999999999999764
|
| >1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B* | Back alignment and structure |
|---|
Probab=97.02 E-value=0.00037 Score=63.03 Aligned_cols=29 Identities=28% Similarity=0.505 Sum_probs=25.4
Q ss_pred ccCCCcEEEEECCCCCcHHHHHHHHHHHh
Q 021362 103 NVNVKHIVGLAGPPGAGKSTLAAEVVRRI 131 (313)
Q Consensus 103 ~i~~Geiv~l~GpNGsGKSTLlk~l~gl~ 131 (313)
....|.++.|.||+||||||+.+.|+..+
T Consensus 29 ~~~~~~livl~G~sGsGKSTla~~L~~~~ 57 (287)
T 1gvn_B 29 AVESPTAFLLGGQPGSGKTSLRSAIFEET 57 (287)
T ss_dssp CCSSCEEEEEECCTTSCTHHHHHHHHHHT
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 34568899999999999999999998765
|
| >1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A | Back alignment and structure |
|---|
Probab=97.02 E-value=0.00035 Score=59.25 Aligned_cols=22 Identities=36% Similarity=0.676 Sum_probs=19.9
Q ss_pred EEEECCCCCcHHHHHHHHHHHh
Q 021362 110 VGLAGPPGAGKSTLAAEVVRRI 131 (313)
Q Consensus 110 v~l~GpNGsGKSTLlk~l~gl~ 131 (313)
+.|+||||||||||++.|....
T Consensus 4 IVi~GPSG~GK~Tl~~~L~~~~ 25 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHHhC
Confidence 6799999999999999988765
|
| >1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A* | Back alignment and structure |
|---|
Probab=97.01 E-value=0.00042 Score=58.87 Aligned_cols=28 Identities=29% Similarity=0.348 Sum_probs=25.5
Q ss_pred CCCcEEEEECCCCCcHHHHHHHHHHHhc
Q 021362 105 NVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 105 ~~Geiv~l~GpNGsGKSTLlk~l~gl~~ 132 (313)
.+|.+++|.|+.||||||+.+.|+..+.
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~~~L~~~l~ 34 (215)
T 1nn5_A 7 RRGALIVLEGVDRAGKSTQSRKLVEALC 34 (215)
T ss_dssp CCCCEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 5688999999999999999999998774
|
| >2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=96.99 E-value=0.00028 Score=58.44 Aligned_cols=28 Identities=29% Similarity=0.424 Sum_probs=19.7
Q ss_pred CCCcEEEEECCCCCcHHHHHHHHHHHhc
Q 021362 105 NVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 105 ~~Geiv~l~GpNGsGKSTLlk~l~gl~~ 132 (313)
.++.++.|.|++||||||+.+.|+..+.
T Consensus 3 ~~~~~I~l~G~~GsGKST~a~~La~~l~ 30 (183)
T 2vli_A 3 MRSPIIWINGPFGVGKTHTAHTLHERLP 30 (183)
T ss_dssp --CCEEEEECCC----CHHHHHHHHHST
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHhcC
Confidence 3567999999999999999999988764
|
| >2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A | Back alignment and structure |
|---|
Probab=96.97 E-value=0.00032 Score=65.71 Aligned_cols=37 Identities=19% Similarity=0.316 Sum_probs=26.8
Q ss_pred EEEEECCCCCcHHHHHHHHHHHhccc--------CCCCceeecCC
Q 021362 109 IVGLAGPPGAGKSTLAAEVVRRINKI--------WPQKASSFDSQ 145 (313)
Q Consensus 109 iv~l~GpNGsGKSTLlk~l~gl~~~~--------~p~~G~i~~~g 145 (313)
+++|+|++|||||||++.|+|..... -++.|.+.++|
T Consensus 181 ~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g 225 (364)
T 2qtf_A 181 SIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINN 225 (364)
T ss_dssp EEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETT
T ss_pred EEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECC
Confidence 49999999999999999999876300 03456677765
|
| >1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=96.95 E-value=0.00045 Score=57.41 Aligned_cols=24 Identities=42% Similarity=0.560 Sum_probs=22.2
Q ss_pred EEEEECCCCCcHHHHHHHHHHHhc
Q 021362 109 IVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 109 iv~l~GpNGsGKSTLlk~l~gl~~ 132 (313)
++.|.|++||||||+.+.|+..+.
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l~ 26 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEILD 26 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 689999999999999999999874
|
| >3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.89 E-value=0.00041 Score=60.46 Aligned_cols=24 Identities=33% Similarity=0.454 Sum_probs=22.0
Q ss_pred EEEEECCCCCcHHHHHHHHHHHhc
Q 021362 109 IVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 109 iv~l~GpNGsGKSTLlk~l~gl~~ 132 (313)
.++|+|++|+|||||++.|.|...
T Consensus 31 ~i~lvG~~g~GKStlin~l~g~~~ 54 (239)
T 3lxx_A 31 RIVLVGKTGAGKSATGNSILGRKV 54 (239)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSCC
T ss_pred EEEEECCCCCCHHHHHHHHcCCCc
Confidence 579999999999999999999765
|
| >1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A* | Back alignment and structure |
|---|
Probab=96.89 E-value=0.00066 Score=58.29 Aligned_cols=27 Identities=41% Similarity=0.596 Sum_probs=24.4
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHHHhc
Q 021362 106 VKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 106 ~Geiv~l~GpNGsGKSTLlk~l~gl~~ 132 (313)
+|-++.|+|+.||||||+.+.|+..+.
T Consensus 3 ~~~~I~l~G~~GsGKsT~a~~La~~l~ 29 (220)
T 1aky_A 3 ESIRMVLIGPPGAGKGTQAPNLQERFH 29 (220)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHcC
Confidence 567899999999999999999998774
|
| >2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A | Back alignment and structure |
|---|
Probab=96.85 E-value=0.00078 Score=56.92 Aligned_cols=28 Identities=39% Similarity=0.618 Sum_probs=24.6
Q ss_pred CCCcEEEEECCCCCcHHHHHHHHHHHhc
Q 021362 105 NVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 105 ~~Geiv~l~GpNGsGKSTLlk~l~gl~~ 132 (313)
..+-+++|.|+.||||||+.+.|+..+.
T Consensus 18 ~~~~~I~l~G~~GsGKST~a~~La~~l~ 45 (201)
T 2cdn_A 18 GSHMRVLLLGPPGAGKGTQAVKLAEKLG 45 (201)
T ss_dssp CSCCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4567899999999999999999998764
|
| >1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2 | Back alignment and structure |
|---|
Probab=96.80 E-value=0.00093 Score=62.48 Aligned_cols=39 Identities=26% Similarity=0.278 Sum_probs=28.4
Q ss_pred CcEEEEECCCCCcHHHHHHHHHHHhc--------ccCCCCceeecCC
Q 021362 107 KHIVGLAGPPGAGKSTLAAEVVRRIN--------KIWPQKASSFDSQ 145 (313)
Q Consensus 107 Geiv~l~GpNGsGKSTLlk~l~gl~~--------~~~p~~G~i~~~g 145 (313)
|..++|+|.+|+|||||++.|++-.. ..-|+.|.+.+.+
T Consensus 2 ~~kI~IVG~pnvGKSTL~n~Lt~~~~~v~~~p~tTi~p~~g~v~~~~ 48 (363)
T 1jal_A 2 GFKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPD 48 (363)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEECCC
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceECceEEEEecCC
Confidence 35689999999999999999998320 0115667766654
|
| >1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A* | Back alignment and structure |
|---|
Probab=96.80 E-value=0.00085 Score=56.67 Aligned_cols=28 Identities=29% Similarity=0.508 Sum_probs=24.1
Q ss_pred CCCcEEEEECCCCCcHHHHHHHHHHHhc
Q 021362 105 NVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 105 ~~Geiv~l~GpNGsGKSTLlk~l~gl~~ 132 (313)
.+..+++|.|+.||||||+.+.|+..+.
T Consensus 13 ~~~~~I~l~G~~GsGKsT~~~~L~~~~g 40 (203)
T 1ukz_A 13 DQVSVIFVLGGPGAGKGTQCEKLVKDYS 40 (203)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHHHSS
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHcC
Confidence 4556899999999999999999987663
|
| >1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A* | Back alignment and structure |
|---|
Probab=96.80 E-value=0.00085 Score=54.95 Aligned_cols=26 Identities=35% Similarity=0.386 Sum_probs=23.2
Q ss_pred CcEEEEECCCCCcHHHHHHHHHHHhc
Q 021362 107 KHIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 107 Geiv~l~GpNGsGKSTLlk~l~gl~~ 132 (313)
=++++|.|+.||||||+.+.|+..+.
T Consensus 7 ~~~i~l~G~~GsGKSTva~~La~~lg 32 (168)
T 1zuh_A 7 MQHLVLIGFMGSGKSSLAQELGLALK 32 (168)
T ss_dssp -CEEEEESCTTSSHHHHHHHHHHHHT
T ss_pred cceEEEECCCCCCHHHHHHHHHHHhC
Confidence 36899999999999999999998774
|
| >1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A* | Back alignment and structure |
|---|
Probab=96.80 E-value=0.00087 Score=55.66 Aligned_cols=26 Identities=38% Similarity=0.641 Sum_probs=23.3
Q ss_pred CcEEEEECCCCCcHHHHHHHHHHHhc
Q 021362 107 KHIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 107 Geiv~l~GpNGsGKSTLlk~l~gl~~ 132 (313)
+.+++|.|+.||||||+.+.|+..+.
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~~l~ 31 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVRDFG 31 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhC
Confidence 46899999999999999999998764
|
| >2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=96.79 E-value=0.00082 Score=55.95 Aligned_cols=24 Identities=25% Similarity=0.524 Sum_probs=22.0
Q ss_pred EEEEECCCCCcHHHHHHHHHHHhc
Q 021362 109 IVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 109 iv~l~GpNGsGKSTLlk~l~gl~~ 132 (313)
+++|.|+.||||||+.+.|+..+.
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~ 25 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYLK 25 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 689999999999999999998773
|
| >1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A* | Back alignment and structure |
|---|
Probab=96.78 E-value=0.00072 Score=58.43 Aligned_cols=28 Identities=21% Similarity=0.417 Sum_probs=23.5
Q ss_pred CCCcEEEEECCCCCcHHHHHHHHHHHhc
Q 021362 105 NVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 105 ~~Geiv~l~GpNGsGKSTLlk~l~gl~~ 132 (313)
.++.+++|.|+.||||||+.+.|+..+.
T Consensus 5 ~~~~~I~l~G~~GsGKsT~a~~La~~l~ 32 (227)
T 1zd8_A 5 ARLLRAVIMGAPGSGKGTVSSRITTHFE 32 (227)
T ss_dssp --CCEEEEEECTTSSHHHHHHHHHHHSS
T ss_pred ccCcEEEEECCCCCCHHHHHHHHHHHcC
Confidence 4567899999999999999999997663
|
| >3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=96.78 E-value=0.0005 Score=61.29 Aligned_cols=23 Identities=30% Similarity=0.456 Sum_probs=21.4
Q ss_pred EEEEECCCCCcHHHHHHHHHHHh
Q 021362 109 IVGLAGPPGAGKSTLAAEVVRRI 131 (313)
Q Consensus 109 iv~l~GpNGsGKSTLlk~l~gl~ 131 (313)
.++|+|++|||||||++.|+|..
T Consensus 5 ~i~lvG~~g~GKTTL~n~l~g~~ 27 (271)
T 3k53_A 5 TVALVGNPNVGKTTIFNALTGLR 27 (271)
T ss_dssp EEEEEECSSSSHHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999975
|
| >1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A* | Back alignment and structure |
|---|
Probab=96.77 E-value=0.00074 Score=55.32 Aligned_cols=25 Identities=24% Similarity=0.473 Sum_probs=22.4
Q ss_pred cEEEEECCCCCcHHHHHHHHHHHhc
Q 021362 108 HIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 108 eiv~l~GpNGsGKSTLlk~l~gl~~ 132 (313)
.+++|.|++||||||+.+.|+..+.
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg 27 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARALG 27 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHHT
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhC
Confidence 3689999999999999999998774
|
| >3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus} | Back alignment and structure |
|---|
Probab=96.76 E-value=0.00085 Score=57.23 Aligned_cols=24 Identities=38% Similarity=0.638 Sum_probs=21.4
Q ss_pred EEEEECCCCCcHHHHHHHHHHHhc
Q 021362 109 IVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 109 iv~l~GpNGsGKSTLlk~l~gl~~ 132 (313)
.++|.|++||||||+.+.|+..+.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~ 25 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKYE 25 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 478999999999999999987664
|
| >2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A* | Back alignment and structure |
|---|
Probab=96.74 E-value=0.00072 Score=56.17 Aligned_cols=42 Identities=14% Similarity=0.128 Sum_probs=29.0
Q ss_pred eEEEEcCCccccChhhHHHHHhhccceEEEEcChHHHHHHHhhc
Q 021362 228 KVVIVDGNYLFLDGGVWKDVSSMFDEKWFIEVDLDTAMQRVLKR 271 (313)
Q Consensus 228 r~Li~d~~~lllDE~~~~~l~~l~~~~i~vtHd~~~~~~rv~gr 271 (313)
..++..+...++|+..++.+. .+..|+++-+.+...+|+..|
T Consensus 73 ~~vi~~g~~~v~~~~~~~~l~--~~~vV~L~~~~e~~~~Rl~~r 114 (184)
T 2iyv_A 73 DGVLSLGGGAVTSPGVRAALA--GHTVVYLEISAAEGVRRTGGN 114 (184)
T ss_dssp CSEEECCTTGGGSHHHHHHHT--TSCEEEEECCHHHHHHHTTCC
T ss_pred CeEEecCCcEEcCHHHHHHHc--CCeEEEEeCCHHHHHHHHhCC
Confidence 344455556778876665554 456789999999998887743
|
| >2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus} | Back alignment and structure |
|---|
Probab=96.73 E-value=0.0032 Score=60.31 Aligned_cols=37 Identities=16% Similarity=0.262 Sum_probs=31.8
Q ss_pred cccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhc
Q 021362 96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 96 ~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~ 132 (313)
.|+.+.--+.+|+++.|.|++|+|||||+..++....
T Consensus 189 ~LD~~lgGl~~G~l~ii~G~pg~GKT~lal~ia~~~a 225 (444)
T 2q6t_A 189 ELDQLIGTLGPGSLNIIAARPAMGKTAFALTIAQNAA 225 (444)
T ss_dssp HHHHHHCCCCTTCEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred hhhhhcCCcCCCcEEEEEeCCCCCHHHHHHHHHHHHH
Confidence 5666665689999999999999999999999888764
|
| >1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1 | Back alignment and structure |
|---|
Probab=96.73 E-value=0.0008 Score=57.87 Aligned_cols=27 Identities=22% Similarity=0.311 Sum_probs=23.9
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHHHhc
Q 021362 106 VKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 106 ~Geiv~l~GpNGsGKSTLlk~l~gl~~ 132 (313)
.+.++.|+|++||||||+.+.|+..+.
T Consensus 4 ~~~~I~l~G~~GsGKsT~~~~La~~l~ 30 (222)
T 1zak_A 4 DPLKVMISGAPASGKGTQCELIKTKYQ 30 (222)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHHHHHC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 456799999999999999999998774
|
| >2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=96.71 E-value=0.0011 Score=54.14 Aligned_cols=24 Identities=33% Similarity=0.368 Sum_probs=21.8
Q ss_pred EEEEECCCCCcHHHHHHHHHHHhc
Q 021362 109 IVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 109 iv~l~GpNGsGKSTLlk~l~gl~~ 132 (313)
+++|.|+.||||||+.+.|+..+.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l~ 25 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSLN 25 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC
Confidence 589999999999999999998764
|
| >3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A | Back alignment and structure |
|---|
Probab=96.71 E-value=0.0017 Score=59.47 Aligned_cols=26 Identities=27% Similarity=0.661 Sum_probs=22.8
Q ss_pred CcEEEEECCCCCcHHHHHHHHHHHhc
Q 021362 107 KHIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 107 Geiv~l~GpNGsGKSTLlk~l~gl~~ 132 (313)
+.+++|+||+|||||||...|+..+.
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~~~~ 28 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAKRLN 28 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHTTT
T ss_pred CcEEEEECCCcCCHHHHHHHHHHhCc
Confidence 45889999999999999999987653
|
| >3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A* | Back alignment and structure |
|---|
Probab=96.67 E-value=0.001 Score=56.82 Aligned_cols=24 Identities=38% Similarity=0.573 Sum_probs=21.1
Q ss_pred EEEEECCCCCcHHHHHHHHHHHhc
Q 021362 109 IVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 109 iv~l~GpNGsGKSTLlk~l~gl~~ 132 (313)
.++|.||+||||||+.+.|+..+.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~ 25 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKYG 25 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 478999999999999999987653
|
| >3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=96.65 E-value=0.0013 Score=57.71 Aligned_cols=28 Identities=21% Similarity=0.283 Sum_probs=24.9
Q ss_pred CCCcEEEEECCCCCcHHHHHHHHHHHhc
Q 021362 105 NVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 105 ~~Geiv~l~GpNGsGKSTLlk~l~gl~~ 132 (313)
.++-+++|.||+||||||+.+.|+..+.
T Consensus 27 ~~~~~I~l~G~~GsGKsT~a~~L~~~~g 54 (243)
T 3tlx_A 27 KPDGRYIFLGAPGSGKGTQSLNLKKSHC 54 (243)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4678999999999999999999997664
|
| >3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A | Back alignment and structure |
|---|
Probab=96.65 E-value=0.0022 Score=58.92 Aligned_cols=25 Identities=32% Similarity=0.486 Sum_probs=22.7
Q ss_pred cEEEEECCCCCcHHHHHHHHHHHhc
Q 021362 108 HIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 108 eiv~l~GpNGsGKSTLlk~l~gl~~ 132 (313)
.++.|+||+|||||||.+.|+..+.
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~l~ 30 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADALP 30 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcC
Confidence 4789999999999999999998774
|
| >2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.63 E-value=0.0011 Score=55.15 Aligned_cols=26 Identities=23% Similarity=0.382 Sum_probs=22.5
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHHHh
Q 021362 106 VKHIVGLAGPPGAGKSTLAAEVVRRI 131 (313)
Q Consensus 106 ~Geiv~l~GpNGsGKSTLlk~l~gl~ 131 (313)
+.-.++|+|+.|+|||||++.+.+..
T Consensus 47 ~~~~i~vvG~~g~GKSsll~~l~~~~ 72 (193)
T 2ged_A 47 YQPSIIIAGPQNSGKTSLLTLLTTDS 72 (193)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 33478999999999999999999864
|
| >3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A* | Back alignment and structure |
|---|
Probab=96.63 E-value=0.0011 Score=58.70 Aligned_cols=27 Identities=30% Similarity=0.523 Sum_probs=24.1
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHHHhc
Q 021362 106 VKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 106 ~Geiv~l~GpNGsGKSTLlk~l~gl~~ 132 (313)
++.++.|.|++||||||+.+.|+..+.
T Consensus 3 ~~~lIvl~G~pGSGKSTla~~La~~L~ 29 (260)
T 3a4m_A 3 DIMLIILTGLPGVGKSTFSKNLAKILS 29 (260)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 467899999999999999999998753
|
| >3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni} | Back alignment and structure |
|---|
Probab=96.63 E-value=0.0014 Score=56.79 Aligned_cols=30 Identities=23% Similarity=0.524 Sum_probs=26.5
Q ss_pred ccCCCcEEEEECCCCCcHHHHHHHHHHHhc
Q 021362 103 NVNVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 103 ~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~ 132 (313)
.+.+..++.|+||.||||+|..+.|+..+.
T Consensus 25 ~~~k~kiI~llGpPGsGKgTqa~~L~~~~g 54 (217)
T 3umf_A 25 KLAKAKVIFVLGGPGSGKGTQCEKLVQKFH 54 (217)
T ss_dssp CTTSCEEEEEECCTTCCHHHHHHHHHHHHC
T ss_pred hccCCcEEEEECCCCCCHHHHHHHHHHHHC
Confidence 456778999999999999999999998774
|
| >3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.63 E-value=0.00076 Score=58.70 Aligned_cols=28 Identities=21% Similarity=0.431 Sum_probs=23.9
Q ss_pred ccCCCcEEEEECCCCCcHHHHHHHHHHH
Q 021362 103 NVNVKHIVGLAGPPGAGKSTLAAEVVRR 130 (313)
Q Consensus 103 ~i~~Geiv~l~GpNGsGKSTLlk~l~gl 130 (313)
.+..|+.+.|.||+||||||++..+...
T Consensus 72 ~i~~g~~~~i~g~TGsGKTt~~~~~~~~ 99 (235)
T 3llm_A 72 AISQNSVVIIRGATGCGKTTQVPQFILD 99 (235)
T ss_dssp HHHHCSEEEEECCTTSSHHHHHHHHHHH
T ss_pred HHhcCCEEEEEeCCCCCcHHhHHHHHhc
Confidence 4668999999999999999998877543
|
| >2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426} | Back alignment and structure |
|---|
Probab=96.62 E-value=0.0017 Score=54.69 Aligned_cols=25 Identities=28% Similarity=0.375 Sum_probs=23.2
Q ss_pred cEEEEECCCCCcHHHHHHHHHHHhc
Q 021362 108 HIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 108 eiv~l~GpNGsGKSTLlk~l~gl~~ 132 (313)
..+.|.||+|+|||||++.|+....
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~~ 79 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANELA 79 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHH
Confidence 6789999999999999999999885
|
| >1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A* | Back alignment and structure |
|---|
Probab=96.57 E-value=0.0013 Score=52.97 Aligned_cols=23 Identities=22% Similarity=0.336 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHHHHh
Q 021362 109 IVGLAGPPGAGKSTLAAEVVRRI 131 (313)
Q Consensus 109 iv~l~GpNGsGKSTLlk~l~gl~ 131 (313)
-++|+|+.|+|||||++.+.+-.
T Consensus 7 ~i~v~G~~~~GKssl~~~l~~~~ 29 (168)
T 1z2a_A 7 KMVVVGNGAVGKSSMIQRYCKGI 29 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 57899999999999999998853
|
| >3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A | Back alignment and structure |
|---|
Probab=96.56 E-value=0.0034 Score=57.36 Aligned_cols=26 Identities=31% Similarity=0.506 Sum_probs=23.1
Q ss_pred CcEEEEECCCCCcHHHHHHHHHHHhc
Q 021362 107 KHIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 107 Geiv~l~GpNGsGKSTLlk~l~gl~~ 132 (313)
+.++.|+||+|||||||...|+..+.
T Consensus 10 ~~~i~i~GptgsGKt~la~~La~~~~ 35 (316)
T 3foz_A 10 PKAIFLMGPTASGKTALAIELRKILP 35 (316)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred CcEEEEECCCccCHHHHHHHHHHhCC
Confidence 46889999999999999999998763
|
| >1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A | Back alignment and structure |
|---|
Probab=96.56 E-value=0.0015 Score=60.55 Aligned_cols=29 Identities=17% Similarity=0.198 Sum_probs=26.8
Q ss_pred ccCCCcEEEEECCCCCcHHHHHHHHHHHh
Q 021362 103 NVNVKHIVGLAGPPGAGKSTLAAEVVRRI 131 (313)
Q Consensus 103 ~i~~Geiv~l~GpNGsGKSTLlk~l~gl~ 131 (313)
-+++|+++.|.||+|+|||||+..++...
T Consensus 118 Gl~~G~i~~I~G~~GsGKTtla~~la~~~ 146 (343)
T 1v5w_A 118 GIESMAITEAFGEFRTGKTQLSHTLCVTA 146 (343)
T ss_dssp SBCSSEEEEEECCTTCTHHHHHHHHHHHT
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 58899999999999999999999999863
|
| >3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus} | Back alignment and structure |
|---|
Probab=96.55 E-value=0.0027 Score=58.71 Aligned_cols=27 Identities=26% Similarity=0.491 Sum_probs=23.8
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHHHhc
Q 021362 106 VKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 106 ~Geiv~l~GpNGsGKSTLlk~l~gl~~ 132 (313)
++.++.|+||.|||||||...|+..+.
T Consensus 39 ~~~lIvI~GPTgsGKTtLa~~LA~~l~ 65 (339)
T 3a8t_A 39 KEKLLVLMGATGTGKSRLSIDLAAHFP 65 (339)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHTTSC
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHCC
Confidence 456899999999999999999998663
|
| >3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A | Back alignment and structure |
|---|
Probab=96.54 E-value=0.0017 Score=55.63 Aligned_cols=27 Identities=26% Similarity=0.340 Sum_probs=24.9
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHHHhc
Q 021362 106 VKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 106 ~Geiv~l~GpNGsGKSTLlk~l~gl~~ 132 (313)
.+..+.|.||+|+|||||++.++..+.
T Consensus 51 ~~~~~ll~G~~G~GKT~la~~l~~~~~ 77 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIHAACARAN 77 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 578899999999999999999999875
|
| >2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=96.53 E-value=0.0014 Score=52.35 Aligned_cols=23 Identities=30% Similarity=0.531 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHHHHh
Q 021362 109 IVGLAGPPGAGKSTLAAEVVRRI 131 (313)
Q Consensus 109 iv~l~GpNGsGKSTLlk~l~gl~ 131 (313)
.++|+|+.|+|||||++.+.+-.
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~~ 25 (161)
T 2dyk_A 3 KVVIVGRPNVGKSSLFNRLLKKR 25 (161)
T ss_dssp EEEEECCTTSSHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999998854
|
| >2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A* | Back alignment and structure |
|---|
Probab=96.53 E-value=0.0016 Score=56.29 Aligned_cols=24 Identities=29% Similarity=0.421 Sum_probs=21.6
Q ss_pred EEEEECCCCCcHHHHHHHHHHHhc
Q 021362 109 IVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 109 iv~l~GpNGsGKSTLlk~l~gl~~ 132 (313)
+++|.|++||||||+.+.|+..+.
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~lg 25 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKYS 25 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 588999999999999999998764
|
| >1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R* | Back alignment and structure |
|---|
Probab=96.53 E-value=0.0014 Score=52.41 Aligned_cols=23 Identities=35% Similarity=0.456 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHHHHh
Q 021362 109 IVGLAGPPGAGKSTLAAEVVRRI 131 (313)
Q Consensus 109 iv~l~GpNGsGKSTLlk~l~gl~ 131 (313)
-++|+|+.|+|||||++.+.+-.
T Consensus 5 ~i~v~G~~~~GKSsli~~l~~~~ 27 (167)
T 1kao_A 5 KVVVLGSGGVGKSALTVQFVTGT 27 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 57999999999999999988743
|
| >2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ... | Back alignment and structure |
|---|
Probab=96.51 E-value=0.0013 Score=52.50 Aligned_cols=23 Identities=26% Similarity=0.478 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHHHHh
Q 021362 109 IVGLAGPPGAGKSTLAAEVVRRI 131 (313)
Q Consensus 109 iv~l~GpNGsGKSTLlk~l~gl~ 131 (313)
.++++|+.|+|||||++.+.+-.
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~~ 27 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQNH 27 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 47899999999999999998754
|
| >1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A* | Back alignment and structure |
|---|
Probab=96.50 E-value=0.0015 Score=52.39 Aligned_cols=23 Identities=30% Similarity=0.384 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHHHHh
Q 021362 109 IVGLAGPPGAGKSTLAAEVVRRI 131 (313)
Q Consensus 109 iv~l~GpNGsGKSTLlk~l~gl~ 131 (313)
-++|+|+.|+|||||++.+.+-.
T Consensus 6 ~i~v~G~~~~GKssl~~~l~~~~ 28 (168)
T 1u8z_A 6 KVIMVGSGGVGKSALTLQFMYDE 28 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 47899999999999999998753
|
| >1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20 | Back alignment and structure |
|---|
Probab=96.50 E-value=0.0019 Score=59.71 Aligned_cols=28 Identities=25% Similarity=0.349 Sum_probs=25.1
Q ss_pred CCCc--EEEEECCCCCcHHHHHHHHHHHhc
Q 021362 105 NVKH--IVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 105 ~~Ge--iv~l~GpNGsGKSTLlk~l~gl~~ 132 (313)
..+. .+.|.||+|+|||||++.+++.+.
T Consensus 40 ~~~~~~~~li~G~~G~GKTtl~~~l~~~~~ 69 (389)
T 1fnn_A 40 PGHHYPRATLLGRPGTGKTVTLRKLWELYK 69 (389)
T ss_dssp TTSSCCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCCCCCeEEEECCCCCCHHHHHHHHHHHHh
Confidence 3456 899999999999999999999986
|
| >1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A* | Back alignment and structure |
|---|
Probab=96.49 E-value=0.00074 Score=57.46 Aligned_cols=37 Identities=24% Similarity=0.421 Sum_probs=27.7
Q ss_pred cccccccccCCCc---EEEEECCCCCcHHHHHHHHHHHhc
Q 021362 96 PTSALASNVNVKH---IVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 96 ~L~~vsl~i~~Ge---iv~l~GpNGsGKSTLlk~l~gl~~ 132 (313)
+++.+.-.+..|. .+.|.||+|+|||||++.++..+.
T Consensus 31 ~~~~l~~~l~~~~~~~~~ll~G~~G~GKT~l~~~~~~~~~ 70 (250)
T 1njg_A 31 VLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLN 70 (250)
T ss_dssp HHHHHHHHHHHTCCCSEEEEECSTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 3333433444444 889999999999999999998875
|
| >1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A* | Back alignment and structure |
|---|
Probab=96.48 E-value=0.0016 Score=52.50 Aligned_cols=23 Identities=35% Similarity=0.421 Sum_probs=20.8
Q ss_pred EEEEECCCCCcHHHHHHHHHHHh
Q 021362 109 IVGLAGPPGAGKSTLAAEVVRRI 131 (313)
Q Consensus 109 iv~l~GpNGsGKSTLlk~l~gl~ 131 (313)
-++|+|+.|+|||||++.+.+-.
T Consensus 8 ~i~v~G~~~~GKSsli~~l~~~~ 30 (170)
T 1z0j_A 8 KVCLLGDTGVGKSSIMWRFVEDS 30 (170)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 57999999999999999998864
|
| >4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A* | Back alignment and structure |
|---|
Probab=96.48 E-value=0.0019 Score=55.75 Aligned_cols=28 Identities=39% Similarity=0.510 Sum_probs=25.5
Q ss_pred CCCcEEEEECCCCCcHHHHHHHHHHHhc
Q 021362 105 NVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 105 ~~Geiv~l~GpNGsGKSTLlk~l~gl~~ 132 (313)
.+|.++.|.|+.||||||+++.|...+.
T Consensus 4 m~g~~i~~eG~~gsGKsT~~~~l~~~l~ 31 (213)
T 4edh_A 4 MTGLFVTLEGPEGAGKSTNRDYLAERLR 31 (213)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCceEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 5789999999999999999999999885
|
| >2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=96.48 E-value=0.0014 Score=60.33 Aligned_cols=28 Identities=18% Similarity=0.338 Sum_probs=25.7
Q ss_pred CCCcEEEEECCCCCcHHHHHHHHHHHhc
Q 021362 105 NVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 105 ~~Geiv~l~GpNGsGKSTLlk~l~gl~~ 132 (313)
..+..+.|.||+|+|||||++.+++.+.
T Consensus 43 ~~~~~vli~G~~G~GKTtl~~~l~~~~~ 70 (386)
T 2qby_A 43 EKPNNIFIYGLTGTGKTAVVKFVLSKLH 70 (386)
T ss_dssp CCCCCEEEEECTTSSHHHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 5678999999999999999999999886
|
| >3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A* | Back alignment and structure |
|---|
Probab=96.47 E-value=0.0037 Score=59.18 Aligned_cols=25 Identities=32% Similarity=0.682 Sum_probs=22.7
Q ss_pred cEEEEECCCCCcHHHHHHHHHHHhc
Q 021362 108 HIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 108 eiv~l~GpNGsGKSTLlk~l~gl~~ 132 (313)
.+++|+||+|||||||...|+..+.
T Consensus 3 ~~i~i~GptgsGKttla~~La~~~~ 27 (409)
T 3eph_A 3 KVIVIAGTTGVGKSQLSIQLAQKFN 27 (409)
T ss_dssp EEEEEEECSSSSHHHHHHHHHHHHT
T ss_pred cEEEEECcchhhHHHHHHHHHHHCC
Confidence 4789999999999999999998774
|
| >1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A* | Back alignment and structure |
|---|
Probab=96.46 E-value=0.0016 Score=52.46 Aligned_cols=23 Identities=26% Similarity=0.248 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHHHHh
Q 021362 109 IVGLAGPPGAGKSTLAAEVVRRI 131 (313)
Q Consensus 109 iv~l~GpNGsGKSTLlk~l~gl~ 131 (313)
-++|+|+.|+|||||++.+.+-.
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~~ 30 (170)
T 1z08_A 8 KVVLLGEGCVGKTSLVLRYCENK 30 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 57999999999999999998753
|
| >1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=96.45 E-value=0.0016 Score=52.28 Aligned_cols=23 Identities=26% Similarity=0.315 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHHHHh
Q 021362 109 IVGLAGPPGAGKSTLAAEVVRRI 131 (313)
Q Consensus 109 iv~l~GpNGsGKSTLlk~l~gl~ 131 (313)
-++|+|+.|+|||||++.+.+-.
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1ek0_A 5 KLVLLGEAAVGKSSIVLRFVSND 27 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999998754
|
| >1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A* | Back alignment and structure |
|---|
Probab=96.45 E-value=0.0017 Score=52.98 Aligned_cols=23 Identities=30% Similarity=0.397 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHHHHh
Q 021362 109 IVGLAGPPGAGKSTLAAEVVRRI 131 (313)
Q Consensus 109 iv~l~GpNGsGKSTLlk~l~gl~ 131 (313)
.++|+|+.|+|||||++.+.+-.
T Consensus 10 ~i~v~G~~~~GKSsli~~l~~~~ 32 (182)
T 1ky3_A 10 KVIILGDSGVGKTSLMHRYVNDK 32 (182)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 58999999999999999998754
|
| >3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II} | Back alignment and structure |
|---|
Probab=96.44 E-value=0.0017 Score=55.74 Aligned_cols=27 Identities=33% Similarity=0.486 Sum_probs=23.8
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHHHhc
Q 021362 106 VKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 106 ~Geiv~l~GpNGsGKSTLlk~l~gl~~ 132 (313)
+|-++.|.|+.||||||+.+.|+..+.
T Consensus 4 ~~~~I~l~G~~GsGKsT~a~~La~~l~ 30 (217)
T 3be4_A 4 KKHNLILIGAPGSGKGTQCEFIKKEYG 30 (217)
T ss_dssp GCCEEEEEECTTSSHHHHHHHHHHHHC
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHhC
Confidence 356789999999999999999998774
|
| >1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D* | Back alignment and structure |
|---|
Probab=96.44 E-value=0.0017 Score=52.14 Aligned_cols=22 Identities=32% Similarity=0.487 Sum_probs=20.0
Q ss_pred EEEEECCCCCcHHHHHHHHHHH
Q 021362 109 IVGLAGPPGAGKSTLAAEVVRR 130 (313)
Q Consensus 109 iv~l~GpNGsGKSTLlk~l~gl 130 (313)
-++|+|+.|+|||||++.+.+-
T Consensus 5 ki~v~G~~~~GKssli~~l~~~ 26 (167)
T 1c1y_A 5 KLVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4789999999999999999874
|
| >1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A* | Back alignment and structure |
|---|
Probab=96.43 E-value=0.0017 Score=52.80 Aligned_cols=23 Identities=39% Similarity=0.404 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHHHHh
Q 021362 109 IVGLAGPPGAGKSTLAAEVVRRI 131 (313)
Q Consensus 109 iv~l~GpNGsGKSTLlk~l~gl~ 131 (313)
-++|+|+.|+|||||++.+.+-.
T Consensus 9 ~i~v~G~~~~GKSsli~~l~~~~ 31 (177)
T 1wms_A 9 KVILLGDGGVGKSSLMNRYVTNK 31 (177)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 47999999999999999998753
|
| >3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A* | Back alignment and structure |
|---|
Probab=96.43 E-value=0.0013 Score=58.93 Aligned_cols=24 Identities=25% Similarity=0.416 Sum_probs=21.5
Q ss_pred cEEEEECCCCCcHHHHHHHHHHHh
Q 021362 108 HIVGLAGPPGAGKSTLAAEVVRRI 131 (313)
Q Consensus 108 eiv~l~GpNGsGKSTLlk~l~gl~ 131 (313)
-.++|+|++|+|||||++.++|..
T Consensus 4 ~kI~lvG~~nvGKSTL~n~L~g~~ 27 (272)
T 3b1v_A 4 TEIALIGNPNSGKTSLFNLITGHN 27 (272)
T ss_dssp EEEEEECCTTSSHHHHHHHHHCCC
T ss_pred eEEEEECCCCCCHHHHHHHHHCCC
Confidence 368999999999999999999864
|
| >1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=96.43 E-value=0.001 Score=60.77 Aligned_cols=37 Identities=19% Similarity=0.414 Sum_probs=28.8
Q ss_pred cccccccccCCC--cEEEEECCCCCcHHHHHHHHHHHhc
Q 021362 96 PTSALASNVNVK--HIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 96 ~L~~vsl~i~~G--eiv~l~GpNGsGKSTLlk~l~gl~~ 132 (313)
+++.+...+..| ..+.|.||+|+|||||++.+++.+.
T Consensus 45 ~~~~l~~~l~~~~~~~~ll~G~~G~GKT~la~~la~~l~ 83 (353)
T 1sxj_D 45 AVTVLKKTLKSANLPHMLFYGPPGTGKTSTILALTKELY 83 (353)
T ss_dssp THHHHHHHTTCTTCCCEEEECSTTSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCEEEEECCCCCCHHHHHHHHHHHhC
Confidence 455555555555 3489999999999999999999874
|
| >1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A | Back alignment and structure |
|---|
Probab=96.43 E-value=0.0015 Score=52.53 Aligned_cols=23 Identities=35% Similarity=0.423 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHHHHh
Q 021362 109 IVGLAGPPGAGKSTLAAEVVRRI 131 (313)
Q Consensus 109 iv~l~GpNGsGKSTLlk~l~gl~ 131 (313)
-++|+|+.|+|||||++.+.+-.
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1g16_A 5 KILLIGDSGVGKSCLLVRFVEDK 27 (170)
T ss_dssp EEEEEESTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHhCC
Confidence 47899999999999999998753
|
| >2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=96.42 E-value=0.0015 Score=52.69 Aligned_cols=22 Identities=36% Similarity=0.531 Sum_probs=20.0
Q ss_pred EEEEECCCCCcHHHHHHHHHHH
Q 021362 109 IVGLAGPPGAGKSTLAAEVVRR 130 (313)
Q Consensus 109 iv~l~GpNGsGKSTLlk~l~gl 130 (313)
-++|+|+.|+|||||++.+.+-
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (172)
T 2erx_A 5 RVAVFGAGGVGKSSLVLRFVKG 26 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5789999999999999999874
|
| >3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=96.41 E-value=0.0017 Score=56.71 Aligned_cols=29 Identities=24% Similarity=0.350 Sum_probs=23.0
Q ss_pred cCCCcEEEEECCCCCcHHHHHHHHHHHhc
Q 021362 104 VNVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 104 i~~Geiv~l~GpNGsGKSTLlk~l~gl~~ 132 (313)
..+|.++.|.|++||||||+++.|+..+.
T Consensus 22 m~~g~~I~~eG~~GsGKsT~~~~l~~~l~ 50 (227)
T 3v9p_A 22 MARGKFITFEGIDGAGKTTHLQWFCDRLQ 50 (227)
T ss_dssp -CCCCEEEEECCC---CHHHHHHHHHHHH
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 35799999999999999999999998885
|
| >2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A* | Back alignment and structure |
|---|
Probab=96.41 E-value=0.0019 Score=52.56 Aligned_cols=27 Identities=22% Similarity=0.291 Sum_probs=22.9
Q ss_pred CCCcEEEEECCCCCcHHHHHHHHHHHh
Q 021362 105 NVKHIVGLAGPPGAGKSTLAAEVVRRI 131 (313)
Q Consensus 105 ~~Geiv~l~GpNGsGKSTLlk~l~gl~ 131 (313)
++.-.++|+|+.|+|||||++.+.+-.
T Consensus 6 ~~~~~i~v~G~~~~GKssl~~~l~~~~ 32 (178)
T 2lkc_A 6 ERPPVVTIMGHVDHGKTTLLDAIRHSK 32 (178)
T ss_dssp CCCCEEEEESCTTTTHHHHHHHHHTTC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCc
Confidence 345678999999999999999998743
|
| >3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=96.40 E-value=0.0021 Score=57.55 Aligned_cols=27 Identities=37% Similarity=0.500 Sum_probs=24.3
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHHHhc
Q 021362 106 VKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 106 ~Geiv~l~GpNGsGKSTLlk~l~gl~~ 132 (313)
++..+.|.||+|+|||||++.|++...
T Consensus 53 ~~~~vll~Gp~GtGKT~la~~la~~~~ 79 (297)
T 3b9p_A 53 PAKGLLLFGPPGNGKTLLARAVATECS 79 (297)
T ss_dssp CCSEEEEESSSSSCHHHHHHHHHHHTT
T ss_pred CCCeEEEECcCCCCHHHHHHHHHHHhC
Confidence 567899999999999999999999774
|
| >2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.40 E-value=0.0014 Score=53.18 Aligned_cols=23 Identities=39% Similarity=0.554 Sum_probs=20.1
Q ss_pred EEEEECCCCCcHHHHHHHHHHHh
Q 021362 109 IVGLAGPPGAGKSTLAAEVVRRI 131 (313)
Q Consensus 109 iv~l~GpNGsGKSTLlk~l~gl~ 131 (313)
-++|+|+.|+|||||++.+.+-.
T Consensus 6 ki~i~G~~~vGKSsl~~~l~~~~ 28 (175)
T 2nzj_A 6 RVVLLGDPGVGKTSLASLFAGKQ 28 (175)
T ss_dssp EEEEECCTTSSHHHHHHHHHCC-
T ss_pred EEEEECCCCccHHHHHHHHhcCC
Confidence 57999999999999999998754
|
| >2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A* | Back alignment and structure |
|---|
Probab=96.38 E-value=0.0017 Score=52.84 Aligned_cols=22 Identities=27% Similarity=0.471 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHHHH
Q 021362 109 IVGLAGPPGAGKSTLAAEVVRR 130 (313)
Q Consensus 109 iv~l~GpNGsGKSTLlk~l~gl 130 (313)
-++|+|+.|+|||||++.+.+-
T Consensus 11 ~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 11 KLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999999886
|
| >2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=96.36 E-value=0.0019 Score=55.18 Aligned_cols=26 Identities=38% Similarity=0.595 Sum_probs=23.1
Q ss_pred CcEEEEECCCCCcHHHHHHHHHHHhc
Q 021362 107 KHIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 107 Geiv~l~GpNGsGKSTLlk~l~gl~~ 132 (313)
+.+++|.|+.||||||+.+.|+..+.
T Consensus 3 ~~~i~i~G~~gsGkst~~~~l~~~~g 28 (219)
T 2h92_A 3 AINIALDGPAAAGKSTIAKRVASELS 28 (219)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHTT
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 45799999999999999999998763
|
| >1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A* | Back alignment and structure |
|---|
Probab=96.35 E-value=0.0026 Score=55.15 Aligned_cols=28 Identities=36% Similarity=0.494 Sum_probs=24.4
Q ss_pred CCCcEEEEECCCCCcHHHHHHHHHHHhc
Q 021362 105 NVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 105 ~~Geiv~l~GpNGsGKSTLlk~l~gl~~ 132 (313)
..+.++.|.|+.||||||+.+.|+..+.
T Consensus 14 ~~~~~I~l~G~~GsGKsT~a~~La~~l~ 41 (233)
T 1ak2_A 14 PKGVRAVLLGPPGAGKGTQAPKLAKNFC 41 (233)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3456899999999999999999998774
|
| >1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A* | Back alignment and structure |
|---|
Probab=96.35 E-value=0.002 Score=51.72 Aligned_cols=22 Identities=32% Similarity=0.430 Sum_probs=20.0
Q ss_pred EEEEECCCCCcHHHHHHHHHHH
Q 021362 109 IVGLAGPPGAGKSTLAAEVVRR 130 (313)
Q Consensus 109 iv~l~GpNGsGKSTLlk~l~gl 130 (313)
-++|+|+.|+|||||++.+.+-
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1r2q_A 8 KLVLLGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4789999999999999999874
|
| >2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A* | Back alignment and structure |
|---|
Probab=96.35 E-value=0.0027 Score=58.14 Aligned_cols=29 Identities=17% Similarity=0.428 Sum_probs=26.7
Q ss_pred ccCCCcEEEEECCCCCcHHHHHHHHHHHh
Q 021362 103 NVNVKHIVGLAGPPGAGKSTLAAEVVRRI 131 (313)
Q Consensus 103 ~i~~Geiv~l~GpNGsGKSTLlk~l~gl~ 131 (313)
-+++|+++.|.||+|+|||||+..++...
T Consensus 103 Gl~~G~i~~i~G~~GsGKT~la~~la~~~ 131 (324)
T 2z43_A 103 GIETRTMTEFFGEFGSGKTQLCHQLSVNV 131 (324)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCCCCcEEEEECCCCCCHhHHHHHHHHHH
Confidence 58899999999999999999999998764
|
| >4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A* | Back alignment and structure |
|---|
Probab=96.35 E-value=0.002 Score=52.84 Aligned_cols=23 Identities=26% Similarity=0.491 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHHHHh
Q 021362 109 IVGLAGPPGAGKSTLAAEVVRRI 131 (313)
Q Consensus 109 iv~l~GpNGsGKSTLlk~l~gl~ 131 (313)
-++|+|+.|+|||||++.+.+-.
T Consensus 6 ki~v~G~~~~GKSsli~~l~~~~ 28 (189)
T 4dsu_A 6 KLVVVGADGVGKSALTIQLIQNH 28 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 57899999999999999998754
|
| >2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.34 E-value=0.002 Score=53.46 Aligned_cols=23 Identities=35% Similarity=0.478 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHHHHh
Q 021362 109 IVGLAGPPGAGKSTLAAEVVRRI 131 (313)
Q Consensus 109 iv~l~GpNGsGKSTLlk~l~gl~ 131 (313)
-++|+|+.|+|||||++.+.+-.
T Consensus 27 ki~v~G~~~~GKSsLi~~l~~~~ 49 (193)
T 2oil_A 27 KVVLIGESGVGKTNLLSRFTRNE 49 (193)
T ss_dssp EEEEESSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 57999999999999999998854
|
| >1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 | Back alignment and structure |
|---|
Probab=96.34 E-value=0.0016 Score=62.75 Aligned_cols=36 Identities=28% Similarity=0.393 Sum_probs=31.3
Q ss_pred cccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhc
Q 021362 96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 96 ~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~ 132 (313)
+++.+ +.+-+|+.++|+|++|+|||||++.|+....
T Consensus 141 ~ID~L-~pi~kGq~~~i~G~sGvGKTtL~~~l~~~~~ 176 (473)
T 1sky_E 141 VVDLL-APYIKGGKIGLFGGAGVGKTVLIQELIHNIA 176 (473)
T ss_dssp HHHHH-SCEETTCEEEEECCSSSCHHHHHHHHHHHHH
T ss_pred HHHHH-hhhccCCEEEEECCCCCCccHHHHHHHhhhh
Confidence 55555 5778999999999999999999999998875
|
| >2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=96.33 E-value=0.0046 Score=52.59 Aligned_cols=27 Identities=30% Similarity=0.471 Sum_probs=23.3
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHHHhc
Q 021362 106 VKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 106 ~Geiv~l~GpNGsGKSTLlk~l~gl~~ 132 (313)
.--.++|+|+.|+|||||++.|++...
T Consensus 29 ~~~~i~i~G~~g~GKTTl~~~l~~~~~ 55 (221)
T 2wsm_A 29 GTVAVNIMGAIGSGKTLLIERTIERIG 55 (221)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHHHHHT
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhc
Confidence 345899999999999999999998764
|
| >1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=96.33 E-value=0.0029 Score=51.73 Aligned_cols=28 Identities=32% Similarity=0.521 Sum_probs=24.3
Q ss_pred CCCcEEEEECCCCCcHHHHHHHHHHHhc
Q 021362 105 NVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 105 ~~Geiv~l~GpNGsGKSTLlk~l~gl~~ 132 (313)
..+..+.|.||.|+|||||++.++..+.
T Consensus 41 ~~~~~~ll~G~~G~GKT~l~~~~~~~~~ 68 (195)
T 1jbk_A 41 RTKNNPVLIGEPGVGKTAIVEGLAQRII 68 (195)
T ss_dssp SSSCEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CCCCceEEECCCCCCHHHHHHHHHHHHH
Confidence 3456789999999999999999998874
|
| >3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=96.33 E-value=0.0021 Score=53.22 Aligned_cols=24 Identities=21% Similarity=0.299 Sum_probs=21.3
Q ss_pred cEEEEECCCCCcHHHHHHHHHHHh
Q 021362 108 HIVGLAGPPGAGKSTLAAEVVRRI 131 (313)
Q Consensus 108 eiv~l~GpNGsGKSTLlk~l~gl~ 131 (313)
--++|+|+.|+|||||++.+.+-.
T Consensus 8 ~ki~v~G~~~~GKSsli~~l~~~~ 31 (208)
T 3clv_A 8 YKTVLLGESSVGKSSIVLRLTKDT 31 (208)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSC
T ss_pred eEEEEECCCCCCHHHHHHHHHhCc
Confidence 358999999999999999999864
|
| >1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A* | Back alignment and structure |
|---|
Probab=96.33 E-value=0.0022 Score=54.83 Aligned_cols=24 Identities=33% Similarity=0.411 Sum_probs=21.4
Q ss_pred EEEEECCCCCcHHHHHHHHHHHhc
Q 021362 109 IVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 109 iv~l~GpNGsGKSTLlk~l~gl~~ 132 (313)
.++|.|+.||||||+.+.|+..+.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~g 25 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKYG 25 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 478999999999999999998664
|
| >3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A* | Back alignment and structure |
|---|
Probab=96.33 E-value=0.0016 Score=52.58 Aligned_cols=23 Identities=43% Similarity=0.408 Sum_probs=19.6
Q ss_pred EEEEECCCCCcHHHHHHHHHHHh
Q 021362 109 IVGLAGPPGAGKSTLAAEVVRRI 131 (313)
Q Consensus 109 iv~l~GpNGsGKSTLlk~l~gl~ 131 (313)
-++|+|+.|+|||||++.+.+..
T Consensus 4 ki~ivG~~~~GKSsli~~l~~~~ 26 (169)
T 3q85_A 4 KVMLVGESGVGKSTLAGTFGGLQ 26 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHCC-
T ss_pred EEEEECCCCCCHHHHHHHHHhcc
Confidence 47899999999999999997643
|
| >3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A* | Back alignment and structure |
|---|
Probab=96.32 E-value=0.0021 Score=52.84 Aligned_cols=23 Identities=17% Similarity=0.185 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHHHHh
Q 021362 109 IVGLAGPPGAGKSTLAAEVVRRI 131 (313)
Q Consensus 109 iv~l~GpNGsGKSTLlk~l~gl~ 131 (313)
-++|+|+.|+|||||++.+.+-.
T Consensus 13 ki~v~G~~~~GKSsli~~l~~~~ 35 (195)
T 3bc1_A 13 KFLALGDSGVGKTSVLYQYTDGK 35 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 57999999999999999998743
|
| >3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A* | Back alignment and structure |
|---|
Probab=96.31 E-value=0.0024 Score=56.04 Aligned_cols=28 Identities=32% Similarity=0.395 Sum_probs=25.4
Q ss_pred CCCcEEEEECCCCCcHHHHHHHHHHHhc
Q 021362 105 NVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 105 ~~Geiv~l~GpNGsGKSTLlk~l~gl~~ 132 (313)
.+|.++.|.|++||||||+++.|...+.
T Consensus 25 ~~~~~i~~eG~~GsGKsT~~~~l~~~l~ 52 (236)
T 3lv8_A 25 MNAKFIVIEGLEGAGKSTAIQVVVETLQ 52 (236)
T ss_dssp -CCCEEEEEESTTSCHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4689999999999999999999999885
|
| >1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2 | Back alignment and structure |
|---|
Probab=96.29 E-value=0.0023 Score=58.54 Aligned_cols=33 Identities=27% Similarity=0.339 Sum_probs=29.4
Q ss_pred cccccccccCCCcEEEEECCCCCcHHHHHHHHHH
Q 021362 96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVR 129 (313)
Q Consensus 96 ~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~g 129 (313)
.+++..+.+ .|.-+.|.|+||+|||||+..+.+
T Consensus 134 ~~H~~~v~~-~g~~vl~~G~sG~GKSt~a~~l~~ 166 (314)
T 1ko7_A 134 SLHGVLVDV-YGVGVLITGDSGIGKSETALELIK 166 (314)
T ss_dssp EEESEEEEE-TTEEEEEEESTTSSHHHHHHHHHH
T ss_pred eeeEEEEEE-CCEEEEEEeCCCCCHHHHHHHHHh
Confidence 677877777 788999999999999999998887
|
| >3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A* | Back alignment and structure |
|---|
Probab=96.29 E-value=0.0012 Score=53.26 Aligned_cols=23 Identities=43% Similarity=0.403 Sum_probs=19.8
Q ss_pred EEEEECCCCCcHHHHHHHHHHHh
Q 021362 109 IVGLAGPPGAGKSTLAAEVVRRI 131 (313)
Q Consensus 109 iv~l~GpNGsGKSTLlk~l~gl~ 131 (313)
-++|+|+.|+|||||++.+.|..
T Consensus 4 ki~~vG~~~~GKSsli~~l~~~~ 26 (166)
T 3q72_A 4 KVLLLGAPGVGKSALARIFGGVE 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHCCC-
T ss_pred EEEEECCCCCCHHHHHHHHcCcc
Confidence 47899999999999999997644
|
| >1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ... | Back alignment and structure |
|---|
Probab=96.28 E-value=0.0024 Score=51.25 Aligned_cols=22 Identities=23% Similarity=0.255 Sum_probs=19.8
Q ss_pred EEEECCCCCcHHHHHHHHHHHh
Q 021362 110 VGLAGPPGAGKSTLAAEVVRRI 131 (313)
Q Consensus 110 v~l~GpNGsGKSTLlk~l~gl~ 131 (313)
++|+|+.|+|||||++.+.+-.
T Consensus 3 i~~~G~~~~GKssl~~~l~~~~ 24 (164)
T 1r8s_A 3 ILMVGLDAAGKTTILYKLKLGE 24 (164)
T ss_dssp EEEECSTTSSHHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHcCC
Confidence 7899999999999999998754
|
| >1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A* | Back alignment and structure |
|---|
Probab=96.28 E-value=0.0016 Score=54.09 Aligned_cols=24 Identities=29% Similarity=0.490 Sum_probs=21.3
Q ss_pred CcEEEEECCCCCcHHHHHHHHHHH
Q 021362 107 KHIVGLAGPPGAGKSTLAAEVVRR 130 (313)
Q Consensus 107 Geiv~l~GpNGsGKSTLlk~l~gl 130 (313)
.-.++|+|+.|+|||||++.+.+-
T Consensus 23 ~~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 1svi_A 23 LPEIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp CCEEEEEEBTTSSHHHHHHHHHTC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 356899999999999999999875
|
| >3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=96.26 E-value=0.0026 Score=56.55 Aligned_cols=29 Identities=38% Similarity=0.576 Sum_probs=25.4
Q ss_pred cCCCcEEEEECCCCCcHHHHHHHHHHHhc
Q 021362 104 VNVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 104 i~~Geiv~l~GpNGsGKSTLlk~l~gl~~ 132 (313)
+..+.-+.|.||+|+|||||++.|+..+.
T Consensus 48 ~~~~~~~ll~G~~GtGKT~la~~la~~~~ 76 (285)
T 3h4m_A 48 IEPPKGILLYGPPGTGKTLLAKAVATETN 76 (285)
T ss_dssp CCCCSEEEEESSSSSSHHHHHHHHHHHTT
T ss_pred CCCCCeEEEECCCCCcHHHHHHHHHHHhC
Confidence 45667799999999999999999999874
|
| >3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A* | Back alignment and structure |
|---|
Probab=96.26 E-value=0.0024 Score=52.79 Aligned_cols=24 Identities=21% Similarity=0.230 Sum_probs=21.5
Q ss_pred EEEEECCCCCcHHHHHHHHHHHhc
Q 021362 109 IVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 109 iv~l~GpNGsGKSTLlk~l~gl~~ 132 (313)
-++|+|+.|+|||||++.+.|...
T Consensus 16 ki~vvG~~~~GKssL~~~l~~~~~ 39 (198)
T 3t1o_A 16 KIVYYGPGLSGKTTNLKWIYSKVP 39 (198)
T ss_dssp EEEEECSTTSSHHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHHhhcc
Confidence 578999999999999999998764
|
| >2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A* | Back alignment and structure |
|---|
Probab=96.25 E-value=0.0024 Score=52.21 Aligned_cols=23 Identities=30% Similarity=0.384 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHHHHh
Q 021362 109 IVGLAGPPGAGKSTLAAEVVRRI 131 (313)
Q Consensus 109 iv~l~GpNGsGKSTLlk~l~gl~ 131 (313)
-++|+|+.|+|||||++.+.+-.
T Consensus 20 ki~v~G~~~~GKSsli~~l~~~~ 42 (187)
T 2a9k_A 20 KVIMVGSGGVGKSALTLQFMYDE 42 (187)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhhCC
Confidence 57999999999999999998753
|
| >1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A* | Back alignment and structure |
|---|
Probab=96.25 E-value=0.0012 Score=54.60 Aligned_cols=24 Identities=29% Similarity=0.344 Sum_probs=21.2
Q ss_pred CcEEEEECCCCCcHHHHHHHHHHH
Q 021362 107 KHIVGLAGPPGAGKSTLAAEVVRR 130 (313)
Q Consensus 107 Geiv~l~GpNGsGKSTLlk~l~gl 130 (313)
.-.++|+|++|+|||||++.+.+-
T Consensus 16 ~~ki~ivG~~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 16 EVRILLLGLDNAGKTTLLKQLASE 39 (181)
T ss_dssp CEEEEEEESTTSSHHHHHHHHCCS
T ss_pred ceEEEEECCCCCCHHHHHHHHhcC
Confidence 446899999999999999998875
|
| >3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A* | Back alignment and structure |
|---|
Probab=96.25 E-value=0.0024 Score=52.77 Aligned_cols=23 Identities=26% Similarity=0.478 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHHHHh
Q 021362 109 IVGLAGPPGAGKSTLAAEVVRRI 131 (313)
Q Consensus 109 iv~l~GpNGsGKSTLlk~l~gl~ 131 (313)
.++|+|+.|+|||||++.+.+-.
T Consensus 23 ki~vvG~~~~GKSsli~~l~~~~ 45 (190)
T 3con_A 23 KLVVVGAGGVGKSALTIQLIQNH 45 (190)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 57899999999999999998753
|
| >3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A | Back alignment and structure |
|---|
Probab=96.25 E-value=0.0017 Score=53.67 Aligned_cols=23 Identities=30% Similarity=0.446 Sum_probs=20.8
Q ss_pred EEEEECCCCCcHHHHHHHHHHHh
Q 021362 109 IVGLAGPPGAGKSTLAAEVVRRI 131 (313)
Q Consensus 109 iv~l~GpNGsGKSTLlk~l~gl~ 131 (313)
.++|+|+.|+|||||++.+.+-.
T Consensus 25 ~i~v~G~~~~GKSsli~~l~~~~ 47 (195)
T 3pqc_A 25 EVAFVGRSNVGKSSLLNALFNRK 47 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCc
Confidence 68999999999999999998754
|
| >4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A* | Back alignment and structure |
|---|
Probab=96.25 E-value=0.0028 Score=54.73 Aligned_cols=27 Identities=30% Similarity=0.420 Sum_probs=25.1
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHHHhc
Q 021362 106 VKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 106 ~Geiv~l~GpNGsGKSTLlk~l~gl~~ 132 (313)
+|.++.|-|++||||||+++.|...+.
T Consensus 2 ~g~~i~~eG~~gsGKsT~~~~l~~~l~ 28 (213)
T 4tmk_A 2 RSKYIVIEGLEGAGKTTARNVVVETLE 28 (213)
T ss_dssp CCCEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 588999999999999999999999885
|
| >3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.24 E-value=0.0015 Score=53.27 Aligned_cols=22 Identities=27% Similarity=0.395 Sum_probs=19.8
Q ss_pred EEEEECCCCCcHHHHHHHHHHH
Q 021362 109 IVGLAGPPGAGKSTLAAEVVRR 130 (313)
Q Consensus 109 iv~l~GpNGsGKSTLlk~l~gl 130 (313)
-++|+|+.|+|||||++.+.+-
T Consensus 11 ~i~v~G~~~~GKssl~~~l~~~ 32 (181)
T 3tw8_B 11 KLLIIGDSGVGKSSLLLRFADN 32 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHCSC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5789999999999999998764
|
| >1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A* | Back alignment and structure |
|---|
Probab=96.24 E-value=0.0025 Score=51.73 Aligned_cols=23 Identities=26% Similarity=0.303 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHHHHh
Q 021362 109 IVGLAGPPGAGKSTLAAEVVRRI 131 (313)
Q Consensus 109 iv~l~GpNGsGKSTLlk~l~gl~ 131 (313)
-++|+|+.|+|||||++.+.+-.
T Consensus 17 ~i~v~G~~~~GKSsli~~l~~~~ 39 (179)
T 1z0f_A 17 KYIIIGDMGVGKSCLLHQFTEKK 39 (179)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 57999999999999999998754
|
| >2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A* | Back alignment and structure |
|---|
Probab=96.24 E-value=0.0028 Score=54.31 Aligned_cols=34 Identities=29% Similarity=0.380 Sum_probs=26.2
Q ss_pred cccccccccCCCcEEEEECCCCCcHHHHHHHHHHH
Q 021362 96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRR 130 (313)
Q Consensus 96 ~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl 130 (313)
.++..-+.+ .|..+.|+||+|+|||||...|+..
T Consensus 24 ~lHa~~v~~-~g~~ilI~GpsGsGKStLA~~La~~ 57 (205)
T 2qmh_A 24 SMHGVLVDI-YGLGVLITGDSGVGKSETALELVQR 57 (205)
T ss_dssp CEESEEEEE-TTEEEEEECCCTTTTHHHHHHHHTT
T ss_pred eeeEEEEEE-CCEEEEEECCCCCCHHHHHHHHHHh
Confidence 445544444 4778999999999999999888754
|
| >2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=96.24 E-value=0.0025 Score=51.93 Aligned_cols=23 Identities=30% Similarity=0.368 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHHHHh
Q 021362 109 IVGLAGPPGAGKSTLAAEVVRRI 131 (313)
Q Consensus 109 iv~l~GpNGsGKSTLlk~l~gl~ 131 (313)
-++|+|+.|+|||||++.+.+-.
T Consensus 12 ~i~v~G~~~~GKssli~~l~~~~ 34 (180)
T 2g6b_A 12 KVMLVGDSGVGKTCLLVRFKDGA 34 (180)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHhCC
Confidence 58999999999999999998754
|
| >1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A | Back alignment and structure |
|---|
Probab=96.23 E-value=0.0024 Score=57.35 Aligned_cols=23 Identities=43% Similarity=0.645 Sum_probs=20.9
Q ss_pred cEEEEECCCCCcHHHHHHHHHHH
Q 021362 108 HIVGLAGPPGAGKSTLAAEVVRR 130 (313)
Q Consensus 108 eiv~l~GpNGsGKSTLlk~l~gl 130 (313)
.++.|.|++||||||+.+.|+..
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~~ 25 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIAK 25 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 47899999999999999999874
|
| >2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A* | Back alignment and structure |
|---|
Probab=96.23 E-value=0.0023 Score=51.96 Aligned_cols=23 Identities=17% Similarity=0.268 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHHHHh
Q 021362 109 IVGLAGPPGAGKSTLAAEVVRRI 131 (313)
Q Consensus 109 iv~l~GpNGsGKSTLlk~l~gl~ 131 (313)
-++|+|+.|+|||||++.+.+-.
T Consensus 16 ~i~v~G~~~~GKssli~~l~~~~ 38 (179)
T 2y8e_A 16 KLVFLGEQSVGKTSLITRFMYDS 38 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 57999999999999999998743
|
| >2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A | Back alignment and structure |
|---|
Probab=96.23 E-value=0.0023 Score=60.00 Aligned_cols=23 Identities=43% Similarity=0.631 Sum_probs=21.0
Q ss_pred EEEEECCCCCcHHHHHHHHHHHh
Q 021362 109 IVGLAGPPGAGKSTLAAEVVRRI 131 (313)
Q Consensus 109 iv~l~GpNGsGKSTLlk~l~gl~ 131 (313)
.++|+|++|+|||||++.|++..
T Consensus 3 ~v~IVG~pnvGKSTL~n~L~~~~ 25 (368)
T 2dby_A 3 AVGIVGLPNVGKSTLFNALTRAN 25 (368)
T ss_dssp SEEEECCSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 37999999999999999999974
|
| >1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A* | Back alignment and structure |
|---|
Probab=96.22 E-value=0.0033 Score=50.63 Aligned_cols=24 Identities=25% Similarity=0.297 Sum_probs=21.0
Q ss_pred CcEEEEECCCCCcHHHHHHHHHHH
Q 021362 107 KHIVGLAGPPGAGKSTLAAEVVRR 130 (313)
Q Consensus 107 Geiv~l~GpNGsGKSTLlk~l~gl 130 (313)
.-.++|+|+.|+|||||++.+.+-
T Consensus 7 ~~~i~v~G~~~~GKssl~~~l~~~ 30 (171)
T 1upt_A 7 EMRILILGLDGAGKTTILYRLQVG 30 (171)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ccEEEEECCCCCCHHHHHHHHhcC
Confidence 346899999999999999999764
|
| >3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0 | Back alignment and structure |
|---|
Probab=96.22 E-value=0.0026 Score=52.81 Aligned_cols=22 Identities=32% Similarity=0.478 Sum_probs=19.1
Q ss_pred EEEEECCCCCcHHHHHHHHHHH
Q 021362 109 IVGLAGPPGAGKSTLAAEVVRR 130 (313)
Q Consensus 109 iv~l~GpNGsGKSTLlk~l~gl 130 (313)
-++|+|++|+|||||++.+.+-
T Consensus 22 ki~ivG~~~vGKSsL~~~~~~~ 43 (184)
T 3ihw_A 22 KVGIVGNLSSGKSALVHRYLTG 43 (184)
T ss_dssp EEEEECCTTSCHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5789999999999999877664
|
| >2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A* | Back alignment and structure |
|---|
Probab=96.20 E-value=0.0024 Score=52.01 Aligned_cols=23 Identities=17% Similarity=0.302 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHHHHh
Q 021362 109 IVGLAGPPGAGKSTLAAEVVRRI 131 (313)
Q Consensus 109 iv~l~GpNGsGKSTLlk~l~gl~ 131 (313)
-++|+|+.|+|||||++.+.+-.
T Consensus 8 ki~v~G~~~~GKssl~~~l~~~~ 30 (178)
T 2hxs_A 8 KIVVLGDGASGKTSLTTCFAQET 30 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHGGG
T ss_pred EEEEECcCCCCHHHHHHHHHhCc
Confidence 57999999999999999998643
|
| >2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=96.20 E-value=0.0018 Score=60.12 Aligned_cols=27 Identities=33% Similarity=0.322 Sum_probs=23.3
Q ss_pred CCCcEEEEECCCCCcHHHHHHHHHHHh
Q 021362 105 NVKHIVGLAGPPGAGKSTLAAEVVRRI 131 (313)
Q Consensus 105 ~~Geiv~l~GpNGsGKSTLlk~l~gl~ 131 (313)
...-.++|+|++|+|||||++.|+|..
T Consensus 165 ~~~~~v~lvG~~gvGKSTLin~L~~~~ 191 (357)
T 2e87_A 165 LEIPTVVIAGHPNVGKSTLLKALTTAK 191 (357)
T ss_dssp SSSCEEEEECSTTSSHHHHHHHHCSSC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 345689999999999999999998854
|
| >2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B* | Back alignment and structure |
|---|
Probab=96.19 E-value=0.0028 Score=51.70 Aligned_cols=23 Identities=39% Similarity=0.481 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHHHHh
Q 021362 109 IVGLAGPPGAGKSTLAAEVVRRI 131 (313)
Q Consensus 109 iv~l~GpNGsGKSTLlk~l~gl~ 131 (313)
-++|+|+.|+|||||++.+.+-.
T Consensus 14 ki~v~G~~~~GKSsli~~l~~~~ 36 (181)
T 2efe_B 14 KLVLLGDVGAGKSSLVLRFVKDQ 36 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 57999999999999999998754
|
| >1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=96.18 E-value=0.0027 Score=53.86 Aligned_cols=24 Identities=25% Similarity=0.408 Sum_probs=21.3
Q ss_pred cEEEEECCCCCcHHHHHHHHHHHh
Q 021362 108 HIVGLAGPPGAGKSTLAAEVVRRI 131 (313)
Q Consensus 108 eiv~l~GpNGsGKSTLlk~l~gl~ 131 (313)
-.++|+|+.|+|||||++.+.+..
T Consensus 13 ~~i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 13 PSIIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 367899999999999999999865
|
| >2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=96.18 E-value=0.0018 Score=53.34 Aligned_cols=23 Identities=30% Similarity=0.382 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHHHHh
Q 021362 109 IVGLAGPPGAGKSTLAAEVVRRI 131 (313)
Q Consensus 109 iv~l~GpNGsGKSTLlk~l~gl~ 131 (313)
-++|+|+.|+|||||++.+.+-.
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~~ 25 (190)
T 2cxx_A 3 TIIFAGRSNVGKSTLIYRLTGKK 25 (190)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSCC
T ss_pred EEEEECCCCCCHHHHHHHHhCcC
Confidence 37899999999999999998753
|
| >3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=96.18 E-value=0.0063 Score=58.30 Aligned_cols=27 Identities=30% Similarity=0.444 Sum_probs=25.1
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHHHhc
Q 021362 106 VKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 106 ~Geiv~l~GpNGsGKSTLlk~l~gl~~ 132 (313)
++.++.++|++|+||||++..|+..+.
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~ 125 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQ 125 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHH
Confidence 478999999999999999999999886
|
| >1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1 | Back alignment and structure |
|---|
Probab=96.17 E-value=0.0023 Score=58.10 Aligned_cols=23 Identities=35% Similarity=0.556 Sum_probs=21.1
Q ss_pred EEEEECCCCCcHHHHHHHHHHHh
Q 021362 109 IVGLAGPPGAGKSTLAAEVVRRI 131 (313)
Q Consensus 109 iv~l~GpNGsGKSTLlk~l~gl~ 131 (313)
+++|+|.+|+|||||++.|.|.-
T Consensus 9 ~V~ivG~~nvGKSTLln~l~g~~ 31 (301)
T 1wf3_A 9 FVAIVGKPNVGKSTLLNNLLGVK 31 (301)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCc
Confidence 68999999999999999999853
|
| >3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A* | Back alignment and structure |
|---|
Probab=96.17 E-value=0.0028 Score=60.22 Aligned_cols=30 Identities=33% Similarity=0.313 Sum_probs=25.3
Q ss_pred cccCCCcEEEEECCCCCcHHHHHHHHHHHh
Q 021362 102 SNVNVKHIVGLAGPPGAGKSTLAAEVVRRI 131 (313)
Q Consensus 102 l~i~~Geiv~l~GpNGsGKSTLlk~l~gl~ 131 (313)
+.-..+.++.|+|++||||||+.+.|+..+
T Consensus 253 ~~~~~~~lIil~G~pGSGKSTla~~L~~~~ 282 (416)
T 3zvl_A 253 LLSPNPEVVVAVGFPGAGKSTFIQEHLVSA 282 (416)
T ss_dssp SCCSSCCEEEEESCTTSSHHHHHHHHTGGG
T ss_pred cCCCCCEEEEEECCCCCCHHHHHHHHHHhc
Confidence 344567899999999999999999988655
|
| >3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A* | Back alignment and structure |
|---|
Probab=96.16 E-value=0.0034 Score=54.32 Aligned_cols=28 Identities=14% Similarity=0.296 Sum_probs=26.0
Q ss_pred CCCcEEEEECCCCCcHHHHHHHHHHHhc
Q 021362 105 NVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 105 ~~Geiv~l~GpNGsGKSTLlk~l~gl~~ 132 (313)
.+|.++.|.|+.||||||+++.|...+.
T Consensus 3 ~~g~~i~~eG~~g~GKst~~~~l~~~l~ 30 (216)
T 3tmk_A 3 GRGKLILIEGLDRTGKTTQCNILYKKLQ 30 (216)
T ss_dssp CCCCEEEEEECSSSSHHHHHHHHHHHHC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 4689999999999999999999999885
|
| >2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.16 E-value=0.0028 Score=52.92 Aligned_cols=23 Identities=30% Similarity=0.384 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHHHHh
Q 021362 109 IVGLAGPPGAGKSTLAAEVVRRI 131 (313)
Q Consensus 109 iv~l~GpNGsGKSTLlk~l~gl~ 131 (313)
-++|+|+.|+|||||++.+.+-.
T Consensus 16 ki~v~G~~~~GKSsli~~l~~~~ 38 (206)
T 2bov_A 16 KVIMVGSGGVGKSALTLQFMYDE 38 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 57999999999999999998753
|
| >1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B* | Back alignment and structure |
|---|
Probab=96.15 E-value=0.0029 Score=52.94 Aligned_cols=23 Identities=30% Similarity=0.466 Sum_probs=20.8
Q ss_pred EEEEECCCCCcHHHHHHHHHHHh
Q 021362 109 IVGLAGPPGAGKSTLAAEVVRRI 131 (313)
Q Consensus 109 iv~l~GpNGsGKSTLlk~l~gl~ 131 (313)
.++|+|+.|+|||||++.+.+-.
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~~ 32 (207)
T 1vg8_A 10 KVIILGDSGVGKTSLMNQYVNKK 32 (207)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 58999999999999999998854
|
| >2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A* | Back alignment and structure |
|---|
Probab=96.15 E-value=0.0026 Score=52.19 Aligned_cols=23 Identities=26% Similarity=0.395 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHHHHh
Q 021362 109 IVGLAGPPGAGKSTLAAEVVRRI 131 (313)
Q Consensus 109 iv~l~GpNGsGKSTLlk~l~gl~ 131 (313)
-++|+|+.|+|||||++.+.+-.
T Consensus 12 ki~v~G~~~~GKSsli~~l~~~~ 34 (186)
T 2bme_A 12 KFLVIGNAGTGKSCLLHQFIEKK 34 (186)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 57999999999999999998754
|
| >3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A* | Back alignment and structure |
|---|
Probab=96.15 E-value=0.0034 Score=53.87 Aligned_cols=24 Identities=42% Similarity=0.707 Sum_probs=21.8
Q ss_pred EEEEECCCCCcHHHHHHHHHHHhc
Q 021362 109 IVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 109 iv~l~GpNGsGKSTLlk~l~gl~~ 132 (313)
++.|+||.||||+|..+.|+..+.
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~g 25 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEKG 25 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHC
Confidence 578999999999999999998875
|
| >2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A* | Back alignment and structure |
|---|
Probab=96.14 E-value=0.003 Score=52.33 Aligned_cols=23 Identities=17% Similarity=0.196 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHHHHh
Q 021362 109 IVGLAGPPGAGKSTLAAEVVRRI 131 (313)
Q Consensus 109 iv~l~GpNGsGKSTLlk~l~gl~ 131 (313)
-++|+|+.|+|||||++.+.+-.
T Consensus 24 ki~vvG~~~~GKSsli~~l~~~~ 46 (189)
T 2gf9_A 24 KLLLIGNSSVGKTSFLFRYADDS 46 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 57999999999999999998854
|
| >3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A* | Back alignment and structure |
|---|
Probab=96.14 E-value=0.0025 Score=58.01 Aligned_cols=24 Identities=33% Similarity=0.515 Sum_probs=21.7
Q ss_pred cEEEEECCCCCcHHHHHHHHHHHh
Q 021362 108 HIVGLAGPPGAGKSTLAAEVVRRI 131 (313)
Q Consensus 108 eiv~l~GpNGsGKSTLlk~l~gl~ 131 (313)
-+|+|+|..|+|||||++.|.|.-
T Consensus 11 g~v~ivG~~nvGKSTLin~l~g~~ 34 (308)
T 3iev_A 11 GYVAIVGKPNVGKSTLLNNLLGTK 34 (308)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSC
T ss_pred CEEEEECCCCCcHHHHHHHHhCCC
Confidence 489999999999999999999854
|
| >3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis} | Back alignment and structure |
|---|
Probab=96.14 E-value=0.004 Score=54.22 Aligned_cols=28 Identities=18% Similarity=0.293 Sum_probs=25.9
Q ss_pred CCCcEEEEECCCCCcHHHHHHHHHHHhc
Q 021362 105 NVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 105 ~~Geiv~l~GpNGsGKSTLlk~l~gl~~ 132 (313)
.+|.++.|.|+.||||||+++.|...+.
T Consensus 19 ~~~~~i~~~G~~g~GKst~~~~l~~~l~ 46 (223)
T 3ld9_A 19 PGSMFITFEGIDGSGKTTQSHLLAEYLS 46 (223)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 5789999999999999999999999885
|
| >3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A* | Back alignment and structure |
|---|
Probab=96.13 E-value=0.0031 Score=51.70 Aligned_cols=23 Identities=30% Similarity=0.520 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHHHHh
Q 021362 109 IVGLAGPPGAGKSTLAAEVVRRI 131 (313)
Q Consensus 109 iv~l~GpNGsGKSTLlk~l~gl~ 131 (313)
.++|+|+.|+|||||++.+.+-.
T Consensus 20 ki~v~G~~~~GKSsl~~~l~~~~ 42 (183)
T 3kkq_A 20 KLVVVGDGGVGKSALTIQFFQKI 42 (183)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 57899999999999999998753
|
| >3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.13 E-value=0.0031 Score=52.26 Aligned_cols=23 Identities=30% Similarity=0.349 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHHHHh
Q 021362 109 IVGLAGPPGAGKSTLAAEVVRRI 131 (313)
Q Consensus 109 iv~l~GpNGsGKSTLlk~l~gl~ 131 (313)
-++|+|+.|+|||||++.+.+-.
T Consensus 18 ki~v~G~~~~GKSsli~~l~~~~ 40 (196)
T 3tkl_A 18 KLLLIGDSGVGKSCLLLRFADDT 40 (196)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 58999999999999999999854
|
| >1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B* | Back alignment and structure |
|---|
Probab=96.11 E-value=0.0028 Score=52.30 Aligned_cols=23 Identities=17% Similarity=0.276 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHHHHh
Q 021362 109 IVGLAGPPGAGKSTLAAEVVRRI 131 (313)
Q Consensus 109 iv~l~GpNGsGKSTLlk~l~gl~ 131 (313)
-++|+|+.|+|||||++.+.+-.
T Consensus 9 ki~v~G~~~vGKSsli~~l~~~~ 31 (184)
T 1m7b_A 9 KIVVVGDSQCGKTALLHVFAKDC 31 (184)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 57899999999999999998853
|
| >2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=96.10 E-value=0.0029 Score=52.50 Aligned_cols=23 Identities=35% Similarity=0.421 Sum_probs=20.7
Q ss_pred cEEEEECCCCCcHHHHHHHHHHH
Q 021362 108 HIVGLAGPPGAGKSTLAAEVVRR 130 (313)
Q Consensus 108 eiv~l~GpNGsGKSTLlk~l~gl 130 (313)
--++|+|+.|+|||||++.+.+-
T Consensus 9 ~ki~vvG~~~~GKSsli~~l~~~ 31 (199)
T 2gf0_A 9 YRVVVFGAGGVGKSSLVLRFVKG 31 (199)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCcHHHHHHHHHcC
Confidence 36899999999999999999884
|
| >2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=96.10 E-value=0.0034 Score=54.69 Aligned_cols=27 Identities=19% Similarity=0.238 Sum_probs=24.2
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHHHhc
Q 021362 106 VKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 106 ~Geiv~l~GpNGsGKSTLlk~l~gl~~ 132 (313)
+|.+++|.|+.||||||+++.|+..++
T Consensus 1 ~~~~i~~~G~~g~GKtt~~~~l~~~l~ 27 (241)
T 2ocp_A 1 GPRRLSIEGNIAVGKSTFVKLLTKTYP 27 (241)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 367899999999999999999998873
|
| >1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ... | Back alignment and structure |
|---|
Probab=96.09 E-value=0.0033 Score=51.43 Aligned_cols=22 Identities=18% Similarity=0.205 Sum_probs=19.9
Q ss_pred EEEEECCCCCcHHHHHHHHHHH
Q 021362 109 IVGLAGPPGAGKSTLAAEVVRR 130 (313)
Q Consensus 109 iv~l~GpNGsGKSTLlk~l~gl 130 (313)
-++|+|+.|+|||||++.+.+-
T Consensus 7 ~i~~~G~~~~GKssl~~~l~~~ 28 (186)
T 1mh1_A 7 KCVVVGDGAVGKTCLLISYTTN 28 (186)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5799999999999999999864
|
| >2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=96.09 E-value=0.003 Score=52.59 Aligned_cols=23 Identities=35% Similarity=0.502 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHHHHh
Q 021362 109 IVGLAGPPGAGKSTLAAEVVRRI 131 (313)
Q Consensus 109 iv~l~GpNGsGKSTLlk~l~gl~ 131 (313)
-++|+|+.|+|||||++.+.+-.
T Consensus 25 ki~vvG~~~~GKSsli~~l~~~~ 47 (192)
T 2fg5_A 25 KVCLLGDTGVGKSSIVCRFVQDH 47 (192)
T ss_dssp EEEEEECTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 57999999999999999998754
|
| >3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila} | Back alignment and structure |
|---|
Probab=96.08 E-value=0.0024 Score=56.63 Aligned_cols=23 Identities=30% Similarity=0.361 Sum_probs=21.0
Q ss_pred EEEEECCCCCcHHHHHHHHHHHh
Q 021362 109 IVGLAGPPGAGKSTLAAEVVRRI 131 (313)
Q Consensus 109 iv~l~GpNGsGKSTLlk~l~gl~ 131 (313)
.++|+|..|||||||++.+.|..
T Consensus 3 kI~lvG~~n~GKSTL~n~L~g~~ 25 (256)
T 3iby_A 3 HALLIGNPNCGKTTLFNALTNAN 25 (256)
T ss_dssp EEEEEESTTSSHHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 47999999999999999999874
|
| >1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A* | Back alignment and structure |
|---|
Probab=96.06 E-value=0.003 Score=57.40 Aligned_cols=27 Identities=19% Similarity=0.252 Sum_probs=24.0
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHHHhc
Q 021362 106 VKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 106 ~Geiv~l~GpNGsGKSTLlk~l~gl~~ 132 (313)
.+..+.|.||+|+|||||++.|++.+.
T Consensus 36 ~~~~lll~G~~GtGKT~la~~i~~~~~ 62 (324)
T 1l8q_A 36 LYNPIFIYGSVGTGKTHLLQAAGNEAK 62 (324)
T ss_dssp SCSSEEEECSSSSSHHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHH
Confidence 356788999999999999999999885
|
| >2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A* | Back alignment and structure |
|---|
Probab=96.05 E-value=0.0016 Score=57.39 Aligned_cols=34 Identities=35% Similarity=0.551 Sum_probs=26.7
Q ss_pred ccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhc
Q 021362 97 TSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 97 L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~ 132 (313)
+.++.+...+| +.|.||+|+|||||++.|+....
T Consensus 36 ~~~~~~~~~~~--vll~G~~GtGKT~la~~la~~~~ 69 (268)
T 2r62_A 36 YANLGAKIPKG--VLLVGPPGTGKTLLAKAVAGEAH 69 (268)
T ss_dssp HHHHSCCCCSC--CCCBCSSCSSHHHHHHHHHHHHT
T ss_pred HHHCCCCCCce--EEEECCCCCcHHHHHHHHHHHhC
Confidence 34444555556 67999999999999999999874
|
| >1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B* | Back alignment and structure |
|---|
Probab=96.03 E-value=0.0037 Score=51.75 Aligned_cols=23 Identities=17% Similarity=0.205 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHHHHh
Q 021362 109 IVGLAGPPGAGKSTLAAEVVRRI 131 (313)
Q Consensus 109 iv~l~GpNGsGKSTLlk~l~gl~ 131 (313)
-++|+|+.|+|||||++.+.+-.
T Consensus 22 ki~v~G~~~~GKSsli~~l~~~~ 44 (189)
T 1z06_A 22 KIIVIGDSNVGKTCLTYRFCAGR 44 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 57999999999999999998743
|
| >2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A* | Back alignment and structure |
|---|
Probab=96.02 E-value=0.0036 Score=52.38 Aligned_cols=23 Identities=43% Similarity=0.384 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHHHHh
Q 021362 109 IVGLAGPPGAGKSTLAAEVVRRI 131 (313)
Q Consensus 109 iv~l~GpNGsGKSTLlk~l~gl~ 131 (313)
.++|+|++|+|||||++.+.|..
T Consensus 8 kv~lvG~~~vGKSsL~~~~~~~~ 30 (192)
T 2cjw_A 8 RVVLIGEQGVGKSTLANIFAGVH 30 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcCc
Confidence 58999999999999999999853
|
| >3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A* | Back alignment and structure |
|---|
Probab=96.02 E-value=0.0033 Score=51.41 Aligned_cols=22 Identities=27% Similarity=0.427 Sum_probs=19.7
Q ss_pred EEEEECCCCCcHHHHHHHHHHH
Q 021362 109 IVGLAGPPGAGKSTLAAEVVRR 130 (313)
Q Consensus 109 iv~l~GpNGsGKSTLlk~l~gl 130 (313)
.++|+|+.|+|||||++.+.+-
T Consensus 8 ki~~~G~~~~GKSsli~~l~~~ 29 (181)
T 3t5g_A 8 KIAILGYRSVGKSSLTIQFVEG 29 (181)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 5789999999999999999853
|
| >2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=96.02 E-value=0.0038 Score=51.02 Aligned_cols=28 Identities=29% Similarity=0.437 Sum_probs=24.2
Q ss_pred CCCcEEEEECCCCCcHHHHHHHHHHHhc
Q 021362 105 NVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 105 ~~Geiv~l~GpNGsGKSTLlk~l~gl~~ 132 (313)
..+..+.|.||.|+|||||++.++..+.
T Consensus 41 ~~~~~vll~G~~G~GKT~la~~~~~~~~ 68 (187)
T 2p65_A 41 RTKNNPILLGDPGVGKTAIVEGLAIKIV 68 (187)
T ss_dssp SSSCEEEEESCGGGCHHHHHHHHHHHHH
T ss_pred CCCCceEEECCCCCCHHHHHHHHHHHHH
Confidence 3456778999999999999999998875
|
| >2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A* | Back alignment and structure |
|---|
Probab=96.02 E-value=0.0037 Score=51.87 Aligned_cols=23 Identities=26% Similarity=0.319 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHHHHh
Q 021362 109 IVGLAGPPGAGKSTLAAEVVRRI 131 (313)
Q Consensus 109 iv~l~GpNGsGKSTLlk~l~gl~ 131 (313)
-++|+|+.|+|||||++.+.+-.
T Consensus 23 ki~v~G~~~~GKSsli~~l~~~~ 45 (191)
T 2a5j_A 23 KYIIIGDTGVGKSCLLLQFTDKR 45 (191)
T ss_dssp EEEEESSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 57899999999999999998754
|
| >3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.01 E-value=0.0033 Score=52.72 Aligned_cols=24 Identities=29% Similarity=0.296 Sum_probs=21.4
Q ss_pred cEEEEECCCCCcHHHHHHHHHHHh
Q 021362 108 HIVGLAGPPGAGKSTLAAEVVRRI 131 (313)
Q Consensus 108 eiv~l~GpNGsGKSTLlk~l~gl~ 131 (313)
--++|+|+.|+|||||++.+.+-.
T Consensus 25 ~ki~vvG~~~~GKSsli~~l~~~~ 48 (201)
T 3oes_A 25 RKVVILGYRCVGKTSLAHQFVEGE 48 (201)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEEECCCCcCHHHHHHHHHhCC
Confidence 367999999999999999999864
|
| >3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=96.01 E-value=0.0034 Score=52.14 Aligned_cols=23 Identities=13% Similarity=0.196 Sum_probs=20.9
Q ss_pred EEEEECCCCCcHHHHHHHHHHHh
Q 021362 109 IVGLAGPPGAGKSTLAAEVVRRI 131 (313)
Q Consensus 109 iv~l~GpNGsGKSTLlk~l~gl~ 131 (313)
-++|+|+.|+|||||++.+.+-.
T Consensus 25 ki~v~G~~~~GKSsli~~l~~~~ 47 (191)
T 3dz8_A 25 KLLIIGNSSVGKTSFLFRYADDT 47 (191)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCcCHHHHHHHHhcCC
Confidence 57899999999999999999865
|
| >2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.99 E-value=0.0052 Score=53.64 Aligned_cols=28 Identities=39% Similarity=0.557 Sum_probs=23.9
Q ss_pred CCCcEEEEECCCCCcHHHHHHHHHHHhc
Q 021362 105 NVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 105 ~~Geiv~l~GpNGsGKSTLlk~l~gl~~ 132 (313)
....-+.|.||+|+|||||++.++..+.
T Consensus 37 ~~~~~vll~G~~GtGKT~la~~la~~~~ 64 (262)
T 2qz4_A 37 KVPKGALLLGPPGCGKTLLAKAVATEAQ 64 (262)
T ss_dssp CCCCEEEEESCTTSSHHHHHHHHHHHHT
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHhC
Confidence 4445678999999999999999999774
|
| >2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A | Back alignment and structure |
|---|
Probab=95.99 E-value=0.0028 Score=55.72 Aligned_cols=24 Identities=29% Similarity=0.472 Sum_probs=21.4
Q ss_pred cEEEEECCCCCcHHHHHHHHHHHh
Q 021362 108 HIVGLAGPPGAGKSTLAAEVVRRI 131 (313)
Q Consensus 108 eiv~l~GpNGsGKSTLlk~l~gl~ 131 (313)
-.++|+|+.|+|||||++.|.|..
T Consensus 23 ~~I~lvG~~g~GKStl~n~l~~~~ 46 (260)
T 2xtp_A 23 LRIILVGKTGTGKSAAGNSILRKQ 46 (260)
T ss_dssp EEEEEEECTTSCHHHHHHHHHTSC
T ss_pred eEEEEECCCCCCHHHHHHHHhCCC
Confidence 468999999999999999998754
|
| >3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C | Back alignment and structure |
|---|
Probab=95.98 E-value=0.0049 Score=50.28 Aligned_cols=23 Identities=17% Similarity=0.120 Sum_probs=20.3
Q ss_pred cEEEEECCCCCcHHHHHHHHHHH
Q 021362 108 HIVGLAGPPGAGKSTLAAEVVRR 130 (313)
Q Consensus 108 eiv~l~GpNGsGKSTLlk~l~gl 130 (313)
--++|+|+.|+|||||++.+.+-
T Consensus 9 ~ki~v~G~~~~GKssl~~~~~~~ 31 (182)
T 3bwd_D 9 IKCVTVGDGAVGKTCLLISYTSN 31 (182)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 46899999999999999998864
|
| >1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A* | Back alignment and structure |
|---|
Probab=95.98 E-value=0.0039 Score=51.65 Aligned_cols=24 Identities=21% Similarity=0.221 Sum_probs=20.9
Q ss_pred cEEEEECCCCCcHHHHHHHHHHHh
Q 021362 108 HIVGLAGPPGAGKSTLAAEVVRRI 131 (313)
Q Consensus 108 eiv~l~GpNGsGKSTLlk~l~gl~ 131 (313)
--++|+|+.|+|||||++.+.+-.
T Consensus 23 ~ki~v~G~~~~GKSsli~~l~~~~ 46 (188)
T 1zd9_A 23 MELTLVGLQYSGKTTFVNVIASGQ 46 (188)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred cEEEEECCCCCCHHHHHHHHHcCC
Confidence 357999999999999999998754
|
| >3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A* | Back alignment and structure |
|---|
Probab=95.97 E-value=0.004 Score=51.77 Aligned_cols=23 Identities=17% Similarity=0.219 Sum_probs=20.8
Q ss_pred EEEEECCCCCcHHHHHHHHHHHh
Q 021362 109 IVGLAGPPGAGKSTLAAEVVRRI 131 (313)
Q Consensus 109 iv~l~GpNGsGKSTLlk~l~gl~ 131 (313)
-++|+|+.|+|||||++.+.+-.
T Consensus 25 ki~~vG~~~~GKSsl~~~l~~~~ 47 (194)
T 3reg_A 25 KIVVVGDGAVGKTCLLLAFSKGE 47 (194)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 58999999999999999998854
|
| >2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=95.97 E-value=0.0035 Score=53.02 Aligned_cols=23 Identities=26% Similarity=0.460 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHHHHh
Q 021362 109 IVGLAGPPGAGKSTLAAEVVRRI 131 (313)
Q Consensus 109 iv~l~GpNGsGKSTLlk~l~gl~ 131 (313)
-++|+|++|+|||||++.+.+-.
T Consensus 28 ki~lvG~~~vGKSsLi~~l~~~~ 50 (201)
T 2ew1_A 28 KIVLIGNAGVGKTCLVRRFTQGL 50 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECcCCCCHHHHHHHHHhCC
Confidence 57999999999999999988754
|
| >2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=95.97 E-value=0.004 Score=51.87 Aligned_cols=24 Identities=25% Similarity=0.426 Sum_probs=21.0
Q ss_pred cEEEEECCCCCcHHHHHHHHHHHh
Q 021362 108 HIVGLAGPPGAGKSTLAAEVVRRI 131 (313)
Q Consensus 108 eiv~l~GpNGsGKSTLlk~l~gl~ 131 (313)
--++|+|+.|+|||||++.+.+-.
T Consensus 29 ~ki~v~G~~~vGKSsli~~l~~~~ 52 (196)
T 2atv_A 29 VKLAIFGRAGVGKSALVVRFLTKR 52 (196)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSC
T ss_pred eEEEEECCCCCCHHHHHHHHHhCC
Confidence 358999999999999999998753
|
| >3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A | Back alignment and structure |
|---|
Probab=95.96 E-value=0.0032 Score=55.76 Aligned_cols=23 Identities=35% Similarity=0.472 Sum_probs=21.0
Q ss_pred EEEEECCCCCcHHHHHHHHHHHh
Q 021362 109 IVGLAGPPGAGKSTLAAEVVRRI 131 (313)
Q Consensus 109 iv~l~GpNGsGKSTLlk~l~gl~ 131 (313)
.++|+|++|+|||||++.++|..
T Consensus 7 kI~lvG~~nvGKTsL~n~l~g~~ 29 (258)
T 3a1s_A 7 KVALAGCPNVGKTSLFNALTGTK 29 (258)
T ss_dssp EEEEECCTTSSHHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 58999999999999999999854
|
| >1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=95.96 E-value=0.0041 Score=51.36 Aligned_cols=24 Identities=25% Similarity=0.339 Sum_probs=21.2
Q ss_pred cEEEEECCCCCcHHHHHHHHHHHh
Q 021362 108 HIVGLAGPPGAGKSTLAAEVVRRI 131 (313)
Q Consensus 108 eiv~l~GpNGsGKSTLlk~l~gl~ 131 (313)
-.++|+|+.|+|||||++.+.+-.
T Consensus 16 ~~i~v~G~~~~GKssli~~l~~~~ 39 (195)
T 1x3s_A 16 LKILIIGESGVGKSSLLLRFTDDT 39 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eEEEEECCCCCCHHHHHHHHHcCC
Confidence 368999999999999999998754
|
| >2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.95 E-value=0.0041 Score=52.04 Aligned_cols=24 Identities=25% Similarity=0.346 Sum_probs=21.1
Q ss_pred cEEEEECCCCCcHHHHHHHHHHHh
Q 021362 108 HIVGLAGPPGAGKSTLAAEVVRRI 131 (313)
Q Consensus 108 eiv~l~GpNGsGKSTLlk~l~gl~ 131 (313)
--++|+|+.|+|||||++.+.+-.
T Consensus 29 ~ki~v~G~~~~GKSsli~~l~~~~ 52 (199)
T 2p5s_A 29 YKIVLAGDAAVGKSSFLMRLCKNE 52 (199)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHCC
T ss_pred eEEEEECcCCCCHHHHHHHHHhCC
Confidence 467999999999999999998754
|
| >2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=95.95 E-value=0.0039 Score=52.57 Aligned_cols=34 Identities=15% Similarity=0.160 Sum_probs=24.1
Q ss_pred cccccccCCCcEEEEECCCCCcHHHHHHHHHHHh
Q 021362 98 SALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRI 131 (313)
Q Consensus 98 ~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~ 131 (313)
.++.|.-...--++|+|+.|+|||||++.+.+-.
T Consensus 16 ~~~~~~~~~~~ki~vvG~~~~GKSsli~~l~~~~ 49 (207)
T 2fv8_A 16 ENLYFQSMIRKKLVVVGDGACGKTCLLIVFSKDE 49 (207)
T ss_dssp ---CGGGSEEEEEEEEECTTSSHHHHHHHHHHSS
T ss_pred cccccccccCcEEEEECcCCCCHHHHHHHHhcCC
Confidence 3344443334468999999999999999998843
|
| >2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B | Back alignment and structure |
|---|
Probab=95.94 E-value=0.0032 Score=60.19 Aligned_cols=31 Identities=39% Similarity=0.564 Sum_probs=26.1
Q ss_pred cccCCC--cEEEEECCCCCcHHHHHHHHHHHhc
Q 021362 102 SNVNVK--HIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 102 l~i~~G--eiv~l~GpNGsGKSTLlk~l~gl~~ 132 (313)
|.+.++ .+++|+|++|+||||++..|++.+.
T Consensus 92 ~~~~~~~~~vI~ivG~~GvGKTTla~~La~~l~ 124 (432)
T 2v3c_C 92 LELNPKKQNVILLVGIQGSGKTTTAAKLARYIQ 124 (432)
T ss_dssp CCCCSSSCCCEEEECCSSSSTTHHHHHHHHHHH
T ss_pred ccccCCCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 444433 5999999999999999999999885
|
| >2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A* | Back alignment and structure |
|---|
Probab=95.93 E-value=0.0038 Score=52.41 Aligned_cols=23 Identities=30% Similarity=0.330 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHHHHh
Q 021362 109 IVGLAGPPGAGKSTLAAEVVRRI 131 (313)
Q Consensus 109 iv~l~GpNGsGKSTLlk~l~gl~ 131 (313)
-++|+|+.|+|||||++.+.+-.
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~~ 32 (206)
T 2bcg_Y 10 KLLLIGNSGVGKSCLLLRFSDDT 32 (206)
T ss_dssp EEEEEESTTSSHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 57999999999999999998754
|
| >3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=95.92 E-value=0.0042 Score=52.18 Aligned_cols=26 Identities=31% Similarity=0.318 Sum_probs=21.7
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHHHh
Q 021362 106 VKHIVGLAGPPGAGKSTLAAEVVRRI 131 (313)
Q Consensus 106 ~Geiv~l~GpNGsGKSTLlk~l~gl~ 131 (313)
+.--++|+|+.|+|||||++.+.+-.
T Consensus 19 ~~~~i~v~G~~~~GKSsli~~l~~~~ 44 (213)
T 3cph_A 19 SIMKILLIGDSGVGKSCLLVRFVEDK 44 (213)
T ss_dssp -CEEEEEECSTTSSHHHHHHHHHHCC
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCC
Confidence 34468999999999999999998753
|
| >1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=95.91 E-value=0.0036 Score=52.38 Aligned_cols=23 Identities=13% Similarity=0.197 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHHHHh
Q 021362 109 IVGLAGPPGAGKSTLAAEVVRRI 131 (313)
Q Consensus 109 iv~l~GpNGsGKSTLlk~l~gl~ 131 (313)
-++|+|+.|+|||||++.+.+-.
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~~ 32 (203)
T 1zbd_A 10 KILIIGNSSVGKTSFLFRYADDS 32 (203)
T ss_dssp EEEEECSTTSSHHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 57999999999999999998754
|
| >1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A* | Back alignment and structure |
|---|
Probab=95.90 E-value=0.0031 Score=51.94 Aligned_cols=25 Identities=20% Similarity=0.186 Sum_probs=21.5
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHHH
Q 021362 106 VKHIVGLAGPPGAGKSTLAAEVVRR 130 (313)
Q Consensus 106 ~Geiv~l~GpNGsGKSTLlk~l~gl 130 (313)
+.-.++|+|+.|+|||||++.+.+-
T Consensus 17 ~~~~i~v~G~~~~GKssl~~~l~~~ 41 (186)
T 1ksh_A 17 RELRLLMLGLDNAGKTTILKKFNGE 41 (186)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHTTC
T ss_pred CeeEEEEECCCCCCHHHHHHHHhcC
Confidence 4457899999999999999998864
|
| >1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=95.88 E-value=0.0032 Score=51.54 Aligned_cols=25 Identities=28% Similarity=0.313 Sum_probs=21.4
Q ss_pred CCCcEEEEECCCCCcHHHHHHHHHH
Q 021362 105 NVKHIVGLAGPPGAGKSTLAAEVVR 129 (313)
Q Consensus 105 ~~Geiv~l~GpNGsGKSTLlk~l~g 129 (313)
.+.-.++|+|++|+|||||++.+.+
T Consensus 16 ~~~~~i~v~G~~~~GKssli~~l~~ 40 (183)
T 1moz_A 16 NKELRILILGLDGAGKTTILYRLQI 40 (183)
T ss_dssp SSCEEEEEEEETTSSHHHHHHHTCC
T ss_pred CCccEEEEECCCCCCHHHHHHHHhc
Confidence 3456789999999999999998874
|
| >2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A | Back alignment and structure |
|---|
Probab=95.87 E-value=0.0035 Score=51.14 Aligned_cols=24 Identities=25% Similarity=0.365 Sum_probs=20.9
Q ss_pred cEEEEECCCCCcHHHHHHHHHHHh
Q 021362 108 HIVGLAGPPGAGKSTLAAEVVRRI 131 (313)
Q Consensus 108 eiv~l~GpNGsGKSTLlk~l~gl~ 131 (313)
--++|+|+.|+|||||++.+.+-.
T Consensus 8 ~ki~~vG~~~vGKTsli~~l~~~~ 31 (178)
T 2iwr_A 8 LRLGVLGDARSGKSSLIHRFLTGS 31 (178)
T ss_dssp EEEEEECCGGGCHHHHHHHHHHSC
T ss_pred eEEEEECCCCCCHHHHHHHHHhCC
Confidence 357999999999999999998753
|
| >1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A | Back alignment and structure |
|---|
Probab=95.86 E-value=0.0052 Score=57.22 Aligned_cols=30 Identities=30% Similarity=0.544 Sum_probs=26.5
Q ss_pred ccCCCcEEEEECCCCCcHHHHHHHHHHHhc
Q 021362 103 NVNVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 103 ~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~ 132 (313)
-+++|.++.|.|++|+|||||+..++....
T Consensus 59 Gl~~G~ii~I~G~pGsGKTtLal~la~~~~ 88 (356)
T 1u94_A 59 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQ 88 (356)
T ss_dssp SEETTSEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 378999999999999999999988887653
|
| >3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.86 E-value=0.0049 Score=51.15 Aligned_cols=23 Identities=30% Similarity=0.514 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHHHHh
Q 021362 109 IVGLAGPPGAGKSTLAAEVVRRI 131 (313)
Q Consensus 109 iv~l~GpNGsGKSTLlk~l~gl~ 131 (313)
-++|+|+.|+|||||++.+.+-.
T Consensus 23 ki~vvG~~~vGKTsLi~~l~~~~ 45 (187)
T 3c5c_A 23 NLAILGRRGAGKSALTVKFLTKR 45 (187)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCcHHHHHHHHHhCC
Confidence 57999999999999999888753
|
| >3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A* | Back alignment and structure |
|---|
Probab=95.85 E-value=0.0035 Score=56.01 Aligned_cols=24 Identities=33% Similarity=0.560 Sum_probs=21.5
Q ss_pred cEEEEECCCCCcHHHHHHHHHHHh
Q 021362 108 HIVGLAGPPGAGKSTLAAEVVRRI 131 (313)
Q Consensus 108 eiv~l~GpNGsGKSTLlk~l~gl~ 131 (313)
-.++|+|..|||||||++.+.|..
T Consensus 4 ~~I~lvG~~n~GKSTLin~l~g~~ 27 (274)
T 3i8s_A 4 LTIGLIGNPNSGKTTLFNQLTGSR 27 (274)
T ss_dssp EEEEEEECTTSSHHHHHHHHHTTC
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC
Confidence 368999999999999999999864
|
| >3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A* | Back alignment and structure |
|---|
Probab=95.84 E-value=0.0026 Score=56.70 Aligned_cols=22 Identities=32% Similarity=0.434 Sum_probs=19.6
Q ss_pred EEEEECCCCCcHHHHHHHHHHH
Q 021362 109 IVGLAGPPGAGKSTLAAEVVRR 130 (313)
Q Consensus 109 iv~l~GpNGsGKSTLlk~l~gl 130 (313)
-++|+|++|+|||||++.|.+-
T Consensus 10 ~I~vvG~~g~GKSTLin~L~~~ 31 (274)
T 3t5d_A 10 TLMVVGESGLGKSTLINSLFLT 31 (274)
T ss_dssp EEEEEECTTSSHHHHHHHHSSS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4799999999999999998764
|
| >3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.84 E-value=0.0023 Score=53.77 Aligned_cols=23 Identities=43% Similarity=0.408 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHHHHh
Q 021362 109 IVGLAGPPGAGKSTLAAEVVRRI 131 (313)
Q Consensus 109 iv~l~GpNGsGKSTLlk~l~gl~ 131 (313)
.++|+|++|+|||||++.+.|..
T Consensus 25 ki~vvG~~~vGKSsLi~~l~~~~ 47 (195)
T 3cbq_A 25 KVMLVGESGVGKSTLAGTFGGLQ 47 (195)
T ss_dssp EEEEECSTTSSHHHHHHHTCCEE
T ss_pred EEEEECCCCCCHHHHHHHHHhcc
Confidence 68999999999999999987643
|
| >1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=95.83 E-value=0.0044 Score=52.52 Aligned_cols=23 Identities=17% Similarity=0.276 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHHHHh
Q 021362 109 IVGLAGPPGAGKSTLAAEVVRRI 131 (313)
Q Consensus 109 iv~l~GpNGsGKSTLlk~l~gl~ 131 (313)
-++|+|+.|+|||||++.+.+-.
T Consensus 30 ki~vvG~~~vGKSsLi~~l~~~~ 52 (205)
T 1gwn_A 30 KIVVVGDSQCGKTALLHVFAKDC 52 (205)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 57899999999999999999853
|
| >2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A* | Back alignment and structure |
|---|
Probab=95.83 E-value=0.0046 Score=59.13 Aligned_cols=26 Identities=19% Similarity=0.198 Sum_probs=23.6
Q ss_pred CcEEEEECCCCCcHHHHHHHHHHHhc
Q 021362 107 KHIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 107 Geiv~l~GpNGsGKSTLlk~l~gl~~ 132 (313)
+..+.|.||+|+|||||+++|++.+.
T Consensus 130 ~~~lll~Gp~G~GKTtLa~aia~~l~ 155 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLLQSIGNYVV 155 (440)
T ss_dssp SCCEEEECSSSSSHHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 46789999999999999999999884
|
| >1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=95.81 E-value=0.0038 Score=51.54 Aligned_cols=25 Identities=28% Similarity=0.327 Sum_probs=21.5
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHHH
Q 021362 106 VKHIVGLAGPPGAGKSTLAAEVVRR 130 (313)
Q Consensus 106 ~Geiv~l~GpNGsGKSTLlk~l~gl 130 (313)
+.-.++|+|+.|+|||||++.+.+-
T Consensus 15 ~~~~i~v~G~~~~GKssl~~~l~~~ 39 (187)
T 1zj6_A 15 QEHKVIIVGLDNAGKTTILYQFSMN 39 (187)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred CccEEEEECCCCCCHHHHHHHHhcC
Confidence 4457899999999999999999853
|
| >2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A* | Back alignment and structure |
|---|
Probab=95.78 E-value=0.0046 Score=56.31 Aligned_cols=28 Identities=18% Similarity=0.363 Sum_probs=25.7
Q ss_pred ccCCCcEEEEECCCCCcHHHHHHHHHHH
Q 021362 103 NVNVKHIVGLAGPPGAGKSTLAAEVVRR 130 (313)
Q Consensus 103 ~i~~Geiv~l~GpNGsGKSTLlk~l~gl 130 (313)
-+++|+++.|.||+|+|||||+..++..
T Consensus 94 Gl~~g~i~~i~G~~gsGKT~la~~la~~ 121 (322)
T 2i1q_A 94 GLESQSVTEFAGVFGSGKTQIMHQSCVN 121 (322)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 5789999999999999999999988864
|
| >2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2 | Back alignment and structure |
|---|
Probab=95.78 E-value=0.0052 Score=51.86 Aligned_cols=24 Identities=21% Similarity=0.224 Sum_probs=21.1
Q ss_pred cEEEEECCCCCcHHHHHHHHHHHh
Q 021362 108 HIVGLAGPPGAGKSTLAAEVVRRI 131 (313)
Q Consensus 108 eiv~l~GpNGsGKSTLlk~l~gl~ 131 (313)
-.++|+|+.|+|||||++.+.+-.
T Consensus 8 ~ki~vvG~~~~GKTsli~~l~~~~ 31 (214)
T 2fh5_B 8 RAVLFVGLCDSGKTLLFVRLLTGQ 31 (214)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHSC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 368999999999999999998754
|
| >1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ... | Back alignment and structure |
|---|
Probab=95.77 E-value=0.0029 Score=55.92 Aligned_cols=28 Identities=21% Similarity=0.240 Sum_probs=24.2
Q ss_pred CCCcEEEEECCCCCcHHHHHHHHHHHhc
Q 021362 105 NVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 105 ~~Geiv~l~GpNGsGKSTLlk~l~gl~~ 132 (313)
.++.+++|.|+.||||||+++.|+..+.
T Consensus 22 ~~~~~I~ieG~~GsGKST~~~~L~~~l~ 49 (263)
T 1p5z_B 22 TRIKKISIEGNIAAGKSTFVNILKQLCE 49 (263)
T ss_dssp -CCEEEEEECSTTSSHHHHHTTTGGGCT
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 5678999999999999999999987763
|
| >2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.76 E-value=0.0037 Score=52.51 Aligned_cols=22 Identities=27% Similarity=0.428 Sum_probs=19.3
Q ss_pred EEEEECCCCCcHHHHHHHHHHH
Q 021362 109 IVGLAGPPGAGKSTLAAEVVRR 130 (313)
Q Consensus 109 iv~l~GpNGsGKSTLlk~l~gl 130 (313)
-++|+|+.|+|||||++.+.+-
T Consensus 27 ki~v~G~~~~GKSsLi~~l~~~ 48 (200)
T 2o52_A 27 KFLVIGSAGTGKSCLLHQFIEN 48 (200)
T ss_dssp EEEEEESTTSSHHHHHHHHHC-
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 5789999999999999999764
|
| >2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=95.76 E-value=0.0091 Score=51.47 Aligned_cols=26 Identities=35% Similarity=0.477 Sum_probs=23.2
Q ss_pred ccCCCcEEEEECCCCCcHHHHHHHHH
Q 021362 103 NVNVKHIVGLAGPPGAGKSTLAAEVV 128 (313)
Q Consensus 103 ~i~~Geiv~l~GpNGsGKSTLlk~l~ 128 (313)
-+++|+++.|.|++|+|||||+-.++
T Consensus 26 Gl~~G~l~~i~G~pG~GKT~l~l~~~ 51 (251)
T 2zts_A 26 GFPEGTTVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp SEETTCEEEEECCTTSSHHHHHHHHH
T ss_pred CCCCCeEEEEEeCCCCCHHHHHHHHH
Confidence 48899999999999999999986654
|
| >1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B* | Back alignment and structure |
|---|
Probab=95.75 E-value=0.0042 Score=56.02 Aligned_cols=23 Identities=26% Similarity=0.429 Sum_probs=21.2
Q ss_pred EEEEECCCCCcHHHHHHHHHHHh
Q 021362 109 IVGLAGPPGAGKSTLAAEVVRRI 131 (313)
Q Consensus 109 iv~l~GpNGsGKSTLlk~l~gl~ 131 (313)
.++|+|+.|+|||||++.|.|.-
T Consensus 26 ~I~vvG~~~~GKSTlln~l~g~~ 48 (315)
T 1jwy_B 26 QIVVVGSQSSGKSSVLENIVGRD 48 (315)
T ss_dssp EEEEEECSSSSHHHHHHHHHTSC
T ss_pred eEEEEcCCCCCHHHHHHHHHCCC
Confidence 68999999999999999999863
|
| >2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A* | Back alignment and structure |
|---|
Probab=95.74 E-value=0.0036 Score=51.52 Aligned_cols=22 Identities=27% Similarity=0.285 Sum_probs=20.0
Q ss_pred EEEEECCCCCcHHHHHHHHHHH
Q 021362 109 IVGLAGPPGAGKSTLAAEVVRR 130 (313)
Q Consensus 109 iv~l~GpNGsGKSTLlk~l~gl 130 (313)
.++|+|+.|+|||||++.+.+-
T Consensus 23 ~i~v~G~~~~GKSsli~~l~~~ 44 (181)
T 2h17_A 23 KVIIVGLDNAGKTTILYQFSMN 44 (181)
T ss_dssp EEEEEEETTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5789999999999999999874
|
| >4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A* | Back alignment and structure |
|---|
Probab=95.74 E-value=0.007 Score=51.78 Aligned_cols=26 Identities=35% Similarity=0.667 Sum_probs=23.8
Q ss_pred CcEEEEECCCCCcHHHHHHHHHHHhc
Q 021362 107 KHIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 107 Geiv~l~GpNGsGKSTLlk~l~gl~~ 132 (313)
|.+++|=|+-||||||+++.|...+.
T Consensus 2 ~kFI~~EG~dGsGKsTq~~~L~~~L~ 27 (205)
T 4hlc_A 2 SAFITFEGPEGSGKTTVINEVYHRLV 27 (205)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCcHHHHHHHHHHHHH
Confidence 56899999999999999999999884
|
| >2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A* | Back alignment and structure |
|---|
Probab=95.72 E-value=0.0056 Score=52.21 Aligned_cols=27 Identities=19% Similarity=0.354 Sum_probs=22.9
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHHHhc
Q 021362 106 VKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 106 ~Geiv~l~GpNGsGKSTLlk~l~gl~~ 132 (313)
+--.++|+|..|+|||||++.++.-..
T Consensus 37 ~~~~i~ivG~~gvGKTtl~~~l~~~~~ 63 (226)
T 2hf9_A 37 GVVAFDFMGAIGSGKTLLIEKLIDNLK 63 (226)
T ss_dssp TCEEEEEEESTTSSHHHHHHHHHHHHT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhc
Confidence 345789999999999999999987753
|
| >2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ... | Back alignment and structure |
|---|
Probab=95.71 E-value=0.0053 Score=51.50 Aligned_cols=23 Identities=17% Similarity=0.221 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHHHHh
Q 021362 109 IVGLAGPPGAGKSTLAAEVVRRI 131 (313)
Q Consensus 109 iv~l~GpNGsGKSTLlk~l~gl~ 131 (313)
-++|+|+.|+|||||++.+.+-.
T Consensus 27 ki~vvG~~~~GKSsli~~l~~~~ 49 (201)
T 2gco_A 27 KLVIVGDGACGKTCLLIVFSKDQ 49 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 47899999999999999998754
|
| >2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.70 E-value=0.0034 Score=52.29 Aligned_cols=23 Identities=26% Similarity=0.395 Sum_probs=19.2
Q ss_pred EEEEECCCCCcHHHHHHHHHHHh
Q 021362 109 IVGLAGPPGAGKSTLAAEVVRRI 131 (313)
Q Consensus 109 iv~l~GpNGsGKSTLlk~l~gl~ 131 (313)
-++|+|+.|+|||||++.+.+-.
T Consensus 28 ki~vvG~~~~GKSsLi~~l~~~~ 50 (192)
T 2il1_A 28 QVIIIGSRGVGKTSLMERFTDDT 50 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHCC--
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999997643
|
| >4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=95.69 E-value=0.002 Score=54.79 Aligned_cols=25 Identities=28% Similarity=0.353 Sum_probs=21.7
Q ss_pred CcEEEEECCCCCcHHHHHHHHHHHh
Q 021362 107 KHIVGLAGPPGAGKSTLAAEVVRRI 131 (313)
Q Consensus 107 Geiv~l~GpNGsGKSTLlk~l~gl~ 131 (313)
.-.++|+|+.|+|||||++.|.|..
T Consensus 29 ~~~i~v~G~~~~GKSslin~l~~~~ 53 (223)
T 4dhe_A 29 QPEIAFAGRSNAGKSTAINVLCNQK 53 (223)
T ss_dssp SCEEEEEESCHHHHHHHHHHHTTCS
T ss_pred CCEEEEEcCCCCCHHHHHHHHhCCC
Confidence 3478999999999999999998853
|
| >2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=95.68 E-value=0.0041 Score=53.41 Aligned_cols=24 Identities=38% Similarity=0.559 Sum_probs=21.1
Q ss_pred CcEEEEECCCCCcHHHHHHHHHHH
Q 021362 107 KHIVGLAGPPGAGKSTLAAEVVRR 130 (313)
Q Consensus 107 Geiv~l~GpNGsGKSTLlk~l~gl 130 (313)
.-.++|+|+.|+|||||++.+.+-
T Consensus 29 ~~kI~vvG~~~vGKSsLin~l~~~ 52 (228)
T 2qu8_A 29 KKTIILSGAPNVGKSSFMNIVSRA 52 (228)
T ss_dssp SEEEEEECSTTSSHHHHHHHHTTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 346899999999999999999875
|
| >2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A* | Back alignment and structure |
|---|
Probab=95.67 E-value=0.0047 Score=52.26 Aligned_cols=22 Identities=23% Similarity=0.268 Sum_probs=19.8
Q ss_pred EEEEECCCCCcHHHHHHHHHHH
Q 021362 109 IVGLAGPPGAGKSTLAAEVVRR 130 (313)
Q Consensus 109 iv~l~GpNGsGKSTLlk~l~gl 130 (313)
-++|+|+.|+|||||++.+.+-
T Consensus 27 ki~vvG~~~~GKSsLi~~l~~~ 48 (217)
T 2f7s_A 27 KLLALGDSGVGKTTFLYRYTDN 48 (217)
T ss_dssp EEEEESCTTSSHHHHHHHHHCS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 4799999999999999998864
|
| >2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A* | Back alignment and structure |
|---|
Probab=95.67 E-value=0.0034 Score=51.42 Aligned_cols=23 Identities=22% Similarity=0.283 Sum_probs=9.2
Q ss_pred EEEEECCCCCcHHHHHHHHHHHh
Q 021362 109 IVGLAGPPGAGKSTLAAEVVRRI 131 (313)
Q Consensus 109 iv~l~GpNGsGKSTLlk~l~gl~ 131 (313)
-++|+|+.|+|||||++.+.+-.
T Consensus 10 ki~v~G~~~~GKssl~~~l~~~~ 32 (183)
T 2fu5_C 10 KLLLIGDSGVGKTCVLFRFSEDA 32 (183)
T ss_dssp EEEEECCCCC-------------
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 58999999999999999988653
|
| >2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=95.66 E-value=0.0058 Score=50.66 Aligned_cols=23 Identities=17% Similarity=0.186 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHHHHh
Q 021362 109 IVGLAGPPGAGKSTLAAEVVRRI 131 (313)
Q Consensus 109 iv~l~GpNGsGKSTLlk~l~gl~ 131 (313)
-++|+|+.|+|||||++.+.+-.
T Consensus 20 ki~v~G~~~~GKssli~~l~~~~ 42 (194)
T 2atx_A 20 KCVVVGDGAVGKTCLLMSYANDA 42 (194)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 57899999999999999998753
|
| >4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927} | Back alignment and structure |
|---|
Probab=95.64 E-value=0.0039 Score=51.74 Aligned_cols=24 Identities=25% Similarity=0.282 Sum_probs=20.8
Q ss_pred cEEEEECCCCCcHHHHHHHHHHHh
Q 021362 108 HIVGLAGPPGAGKSTLAAEVVRRI 131 (313)
Q Consensus 108 eiv~l~GpNGsGKSTLlk~l~gl~ 131 (313)
-.++|+|+.|+|||||++.+.+-.
T Consensus 18 ~ki~v~G~~~~GKSsl~~~l~~~~ 41 (199)
T 4bas_A 18 LQVVMCGLDNSGKTTIINQVKPAQ 41 (199)
T ss_dssp EEEEEECCTTSCHHHHHHHHSCCC
T ss_pred cEEEEECCCCCCHHHHHHHHhcCC
Confidence 467899999999999999988743
|
| >2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.63 E-value=0.0029 Score=52.42 Aligned_cols=24 Identities=21% Similarity=0.142 Sum_probs=21.3
Q ss_pred cEEEEECCCCCcHHHHHHHHHHHh
Q 021362 108 HIVGLAGPPGAGKSTLAAEVVRRI 131 (313)
Q Consensus 108 eiv~l~GpNGsGKSTLlk~l~gl~ 131 (313)
-.++|+|+.|+|||||++.+.+..
T Consensus 22 ~ki~v~G~~~~GKSsli~~l~~~~ 45 (190)
T 2h57_A 22 VHVLCLGLDNSGKTTIINKLKPSN 45 (190)
T ss_dssp EEEEEEECTTSSHHHHHHHTSCGG
T ss_pred cEEEEECCCCCCHHHHHHHHhcCC
Confidence 357899999999999999998765
|
| >2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.62 E-value=0.005 Score=51.36 Aligned_cols=24 Identities=21% Similarity=0.234 Sum_probs=20.3
Q ss_pred CcEEEEECCCCCcHHHHHHHHHHH
Q 021362 107 KHIVGLAGPPGAGKSTLAAEVVRR 130 (313)
Q Consensus 107 Geiv~l~GpNGsGKSTLlk~l~gl 130 (313)
.--++|+|+.|+|||||++.+.+-
T Consensus 20 ~~ki~~~G~~~~GKssl~~~l~~~ 43 (201)
T 2q3h_A 20 GVKCVLVGDGAVGKTSLVVSYTTN 43 (201)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHC-
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 346899999999999999998754
|
| >3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=95.60 E-value=0.0026 Score=61.06 Aligned_cols=35 Identities=40% Similarity=0.666 Sum_probs=27.8
Q ss_pred cccccccCCCcE--EEEECCCCCcHHHHHHHHHHHhc
Q 021362 98 SALASNVNVKHI--VGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 98 ~~vsl~i~~Gei--v~l~GpNGsGKSTLlk~l~gl~~ 132 (313)
..+.-.+..|.+ +.|.||+|+|||||++.|+....
T Consensus 39 ~~L~~~i~~~~~~~vLL~GppGtGKTtlAr~ia~~~~ 75 (447)
T 3pvs_A 39 KPLPRAIEAGHLHSMILWGPPGTGKTTLAEVIARYAN 75 (447)
T ss_dssp SHHHHHHHHTCCCEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCCCcEEEEECCCCCcHHHHHHHHHHHhC
Confidence 344445555554 88999999999999999999875
|
| >3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A* | Back alignment and structure |
|---|
Probab=95.58 E-value=0.0087 Score=55.46 Aligned_cols=28 Identities=36% Similarity=0.522 Sum_probs=24.9
Q ss_pred CCCcEEEEECCCCCcHHHHHHHHHHHhc
Q 021362 105 NVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 105 ~~Geiv~l~GpNGsGKSTLlk~l~gl~~ 132 (313)
.+.-+++|+|+.|+|||||++.|++.+.
T Consensus 77 ~~~~~I~i~G~~G~GKSTl~~~L~~~l~ 104 (355)
T 3p32_A 77 GNAHRVGITGVPGVGKSTAIEALGMHLI 104 (355)
T ss_dssp CCSEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4566899999999999999999998874
|
| >2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.57 E-value=0.0049 Score=52.40 Aligned_cols=22 Identities=32% Similarity=0.386 Sum_probs=19.5
Q ss_pred EEEEECCCCCcHHHHHHHHHHH
Q 021362 109 IVGLAGPPGAGKSTLAAEVVRR 130 (313)
Q Consensus 109 iv~l~GpNGsGKSTLlk~l~gl 130 (313)
-++|+|+.|+|||||++.+.+-
T Consensus 36 ki~vvG~~~vGKSsli~~l~~~ 57 (214)
T 2j1l_A 36 KVVLVGDGGCGKTSLLMVFADG 57 (214)
T ss_dssp EEEEEECTTSSHHHHHHHHHC-
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 5899999999999999999864
|
| >2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.53 E-value=0.0069 Score=50.91 Aligned_cols=23 Identities=17% Similarity=0.241 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHHHHh
Q 021362 109 IVGLAGPPGAGKSTLAAEVVRRI 131 (313)
Q Consensus 109 iv~l~GpNGsGKSTLlk~l~gl~ 131 (313)
-++|+|+.|+|||||++.+.+-.
T Consensus 31 ki~vvG~~~vGKSsli~~l~~~~ 53 (201)
T 2hup_A 31 KLVLVGDASVGKTCVVQRFKTGA 53 (201)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhhCC
Confidence 57999999999999999998643
|
| >3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A* | Back alignment and structure |
|---|
Probab=95.52 E-value=0.0053 Score=51.26 Aligned_cols=23 Identities=26% Similarity=0.381 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHHHHh
Q 021362 109 IVGLAGPPGAGKSTLAAEVVRRI 131 (313)
Q Consensus 109 iv~l~GpNGsGKSTLlk~l~gl~ 131 (313)
-++|+|+.|+|||||++.+.+-.
T Consensus 22 ki~~vG~~~vGKTsLi~~l~~~~ 44 (196)
T 3llu_A 22 RILLMGLRRSGKSSIQKVVFHKM 44 (196)
T ss_dssp EEEEEESTTSSHHHHHHHHHSCC
T ss_pred EEEEECCCCCCHHHHHHHHHhcC
Confidence 57899999999999999887754
|
| >3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B} | Back alignment and structure |
|---|
Probab=95.50 E-value=0.0085 Score=52.37 Aligned_cols=25 Identities=36% Similarity=0.469 Sum_probs=22.4
Q ss_pred cEEEEECCCCCcHHHHHHHHHHHhc
Q 021362 108 HIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 108 eiv~l~GpNGsGKSTLlk~l~gl~~ 132 (313)
-.+||+|+.||||||+.+.|+..+.
T Consensus 9 ~~~~~~G~pGsGKsT~a~~L~~~~g 33 (230)
T 3gmt_A 9 MRLILLGAPGAGKGTQANFIKEKFG 33 (230)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred cceeeECCCCCCHHHHHHHHHHHhC
Confidence 4689999999999999999998774
|
| >3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.50 E-value=0.0079 Score=51.35 Aligned_cols=23 Identities=30% Similarity=0.452 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHHHHh
Q 021362 109 IVGLAGPPGAGKSTLAAEVVRRI 131 (313)
Q Consensus 109 iv~l~GpNGsGKSTLlk~l~gl~ 131 (313)
-++|+|+.|+|||||++.+.+-.
T Consensus 15 ki~v~G~~~vGKSsli~~l~~~~ 37 (223)
T 3cpj_B 15 KIVLIGDSGVGKSNLLSRFTKNE 37 (223)
T ss_dssp EEEEESCTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 57999999999999999998854
|
| >3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=95.49 E-value=0.0083 Score=50.19 Aligned_cols=32 Identities=25% Similarity=0.163 Sum_probs=23.9
Q ss_pred ccccccccCCCcEEEEECCCCCcHHHHHHHHHH
Q 021362 97 TSALASNVNVKHIVGLAGPPGAGKSTLAAEVVR 129 (313)
Q Consensus 97 L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~g 129 (313)
++..-+.+ .|.-+.|.|++|+|||||...+..
T Consensus 7 lHas~v~v-~G~gvli~G~SGaGKStlal~L~~ 38 (181)
T 3tqf_A 7 WHANFLVI-DKMGVLITGEANIGKSELSLALID 38 (181)
T ss_dssp EESEEEEE-TTEEEEEEESSSSSHHHHHHHHHH
T ss_pred EEEEEEEE-CCEEEEEEcCCCCCHHHHHHHHHH
Confidence 33333333 477889999999999999977765
|
| >3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A* | Back alignment and structure |
|---|
Probab=95.48 E-value=0.0058 Score=53.98 Aligned_cols=24 Identities=25% Similarity=0.326 Sum_probs=21.4
Q ss_pred cEEEEECCCCCcHHHHHHHHHHHh
Q 021362 108 HIVGLAGPPGAGKSTLAAEVVRRI 131 (313)
Q Consensus 108 eiv~l~GpNGsGKSTLlk~l~gl~ 131 (313)
-.++|+|+.|+|||||++.|.|-.
T Consensus 37 ~~I~lvG~~g~GKSSLin~l~~~~ 60 (262)
T 3def_A 37 MTVLVLGKGGVGKSSTVNSLIGEQ 60 (262)
T ss_dssp EEEEEEECTTSSHHHHHHHHHTSC
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC
Confidence 468999999999999999999854
|
| >2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A* | Back alignment and structure |
|---|
Probab=95.46 E-value=0.0054 Score=54.75 Aligned_cols=24 Identities=29% Similarity=0.397 Sum_probs=21.6
Q ss_pred cEEEEECCCCCcHHHHHHHHHHHh
Q 021362 108 HIVGLAGPPGAGKSTLAAEVVRRI 131 (313)
Q Consensus 108 eiv~l~GpNGsGKSTLlk~l~gl~ 131 (313)
-.++|+|..|+|||||++.|.|..
T Consensus 27 ~~i~vvG~~~~GKSSLln~l~g~~ 50 (299)
T 2aka_B 27 PQIAVVGGQSAGKSSVLENFVGRD 50 (299)
T ss_dssp CEEEEEEBTTSCHHHHHHHHHTSC
T ss_pred CeEEEEeCCCCCHHHHHHHHHCCC
Confidence 368999999999999999999864
|
| >4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A* | Back alignment and structure |
|---|
Probab=95.44 E-value=0.0076 Score=50.76 Aligned_cols=23 Identities=17% Similarity=0.164 Sum_probs=20.3
Q ss_pred cEEEEECCCCCcHHHHHHHHHHH
Q 021362 108 HIVGLAGPPGAGKSTLAAEVVRR 130 (313)
Q Consensus 108 eiv~l~GpNGsGKSTLlk~l~gl 130 (313)
-.++|+|+.|+|||||++.+.+-
T Consensus 31 ~ki~vvG~~~~GKSsLi~~l~~~ 53 (204)
T 4gzl_A 31 IKCVVVGDGAVGKTCLLISYTTN 53 (204)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEEECcCCCCHHHHHHHHHhC
Confidence 46899999999999999988864
|
| >2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A* | Back alignment and structure |
|---|
Probab=95.43 E-value=0.01 Score=49.74 Aligned_cols=26 Identities=23% Similarity=0.162 Sum_probs=20.9
Q ss_pred CCcEEEEECCCCCcHHHHH-HHHHHHh
Q 021362 106 VKHIVGLAGPPGAGKSTLA-AEVVRRI 131 (313)
Q Consensus 106 ~Geiv~l~GpNGsGKSTLl-k~l~gl~ 131 (313)
+|.++.|.||.|+||||++ +.+..+.
T Consensus 2 ~g~i~vi~G~~gsGKTT~ll~~~~~~~ 28 (184)
T 2orw_A 2 SGKLTVITGPMYSGKTTELLSFVEIYK 28 (184)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred ccEEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4789999999999999998 4444443
|
| >3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A | Back alignment and structure |
|---|
Probab=95.41 E-value=0.01 Score=53.41 Aligned_cols=29 Identities=34% Similarity=0.540 Sum_probs=24.4
Q ss_pred cCCCcEEEEECCCCCcHHHHHHHHHHHhc
Q 021362 104 VNVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 104 i~~Geiv~l~GpNGsGKSTLlk~l~gl~~ 132 (313)
++....+.|.||+|+|||+|++.|+..+.
T Consensus 33 ~~~p~~lLl~GppGtGKT~la~aiA~~l~ 61 (293)
T 3t15_A 33 IKVPLILGIWGGKGQGKSFQCELVFRKMG 61 (293)
T ss_dssp CCCCSEEEEEECTTSCHHHHHHHHHHHHT
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 34455778889999999999999999874
|
| >3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A* | Back alignment and structure |
|---|
Probab=95.40 E-value=0.01 Score=53.16 Aligned_cols=28 Identities=25% Similarity=0.481 Sum_probs=24.3
Q ss_pred CCCcEEEEECCCCCcHHHHHHHHHHHhc
Q 021362 105 NVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 105 ~~Geiv~l~GpNGsGKSTLlk~l~gl~~ 132 (313)
..+.-+.|.||+|+|||||++.++..+.
T Consensus 65 ~~~~~vll~G~~GtGKT~la~~la~~l~ 92 (309)
T 3syl_A 65 TPTLHMSFTGNPGTGKTTVALKMAGLLH 92 (309)
T ss_dssp CCCCEEEEEECTTSSHHHHHHHHHHHHH
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHHH
Confidence 3455789999999999999999998885
|
| >3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A* | Back alignment and structure |
|---|
Probab=95.38 E-value=0.009 Score=50.82 Aligned_cols=23 Identities=17% Similarity=0.270 Sum_probs=20.6
Q ss_pred cEEEEECCCCCcHHHHHHHHHHH
Q 021362 108 HIVGLAGPPGAGKSTLAAEVVRR 130 (313)
Q Consensus 108 eiv~l~GpNGsGKSTLlk~l~gl 130 (313)
--++|+|+.|+|||||++.+.+-
T Consensus 28 ~ki~vvG~~~vGKSsL~~~l~~~ 50 (214)
T 3q3j_B 28 CKLVLVGDVQCGKTAMLQVLAKD 50 (214)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECcCCCCHHHHHHHHhcC
Confidence 46889999999999999999875
|
| >1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A* | Back alignment and structure |
|---|
Probab=95.36 E-value=0.0066 Score=53.82 Aligned_cols=24 Identities=21% Similarity=0.332 Sum_probs=21.2
Q ss_pred cEEEEECCCCCcHHHHHHHHHHHh
Q 021362 108 HIVGLAGPPGAGKSTLAAEVVRRI 131 (313)
Q Consensus 108 eiv~l~GpNGsGKSTLlk~l~gl~ 131 (313)
-.++++|+.|+|||||++.|.|-.
T Consensus 40 ~~I~vvG~~g~GKSSLin~l~~~~ 63 (270)
T 1h65_A 40 LTILVMGKGGVGKSSTVNSIIGER 63 (270)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTSC
T ss_pred eEEEEECCCCCCHHHHHHHHhCCC
Confidence 368999999999999999999754
|
| >2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=95.35 E-value=0.01 Score=49.61 Aligned_cols=24 Identities=33% Similarity=0.632 Sum_probs=21.5
Q ss_pred EEEEECCCCCcHHHHHHHHHHHhc
Q 021362 109 IVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 109 iv~l~GpNGsGKSTLlk~l~gl~~ 132 (313)
.+.|.||.|+|||||++.++..+.
T Consensus 40 ~~ll~G~~G~GKT~l~~~l~~~~~ 63 (226)
T 2chg_A 40 HLLFSGPPGTGKTATAIALARDLF 63 (226)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHHh
Confidence 389999999999999999998763
|
| >2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=95.35 E-value=0.0072 Score=51.83 Aligned_cols=22 Identities=45% Similarity=0.434 Sum_probs=19.9
Q ss_pred EEEEECCCCCcHHHHHHHHHHH
Q 021362 109 IVGLAGPPGAGKSTLAAEVVRR 130 (313)
Q Consensus 109 iv~l~GpNGsGKSTLlk~l~gl 130 (313)
.++|+|.+|+|||||++.+.|.
T Consensus 39 kVvlvG~~~vGKSSLl~r~~~~ 60 (211)
T 2g3y_A 39 RVVLIGEQGVGKSTLANIFAGV 60 (211)
T ss_dssp EEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999998864
|
| >2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C | Back alignment and structure |
|---|
Probab=95.35 E-value=0.0034 Score=52.42 Aligned_cols=23 Identities=26% Similarity=0.368 Sum_probs=4.7
Q ss_pred cEEEEECCCCCcHHHHHHHHHHH
Q 021362 108 HIVGLAGPPGAGKSTLAAEVVRR 130 (313)
Q Consensus 108 eiv~l~GpNGsGKSTLlk~l~gl 130 (313)
--++|+|+.|+|||||++.+.+-
T Consensus 21 ~~i~v~G~~~~GKssli~~l~~~ 43 (208)
T 2yc2_C 21 CKVAVVGEATVGKSALISMFTSK 43 (208)
T ss_dssp EEEEEC-----------------
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 36899999999999999998876
|
| >3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A* | Back alignment and structure |
|---|
Probab=95.34 E-value=0.0074 Score=53.65 Aligned_cols=25 Identities=28% Similarity=0.383 Sum_probs=22.5
Q ss_pred cEEEEECCCCCcHHHHHHHHHHHhc
Q 021362 108 HIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 108 eiv~l~GpNGsGKSTLlk~l~gl~~ 132 (313)
..++|+|.+|+|||||++.|.|...
T Consensus 100 ~~v~~vG~~~vGKSslin~l~~~~~ 124 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIINKLKGKRA 124 (262)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTCC
T ss_pred hheEEeCCCCCCHHHHHHHHhcccc
Confidence 5889999999999999999998654
|
| >2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=95.34 E-value=0.0083 Score=55.10 Aligned_cols=28 Identities=32% Similarity=0.426 Sum_probs=25.0
Q ss_pred CCCcEEEEECCCCCcHHHHHHHHHHHhc
Q 021362 105 NVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 105 ~~Geiv~l~GpNGsGKSTLlk~l~gl~~ 132 (313)
..+..+.|.||+|+|||||++.++..+.
T Consensus 42 ~~~~~vll~G~~G~GKT~l~~~~~~~~~ 69 (387)
T 2v1u_A 42 EKPSNALLYGLTGTGKTAVARLVLRRLE 69 (387)
T ss_dssp CCCCCEEECBCTTSSHHHHHHHHHHHHH
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHHHHH
Confidence 5667899999999999999999998874
|
| >3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli} | Back alignment and structure |
|---|
Probab=95.33 E-value=0.01 Score=47.37 Aligned_cols=27 Identities=30% Similarity=0.249 Sum_probs=23.4
Q ss_pred CCCcEEEEECCCCCcHHHHHHHHHHHh
Q 021362 105 NVKHIVGLAGPPGAGKSTLAAEVVRRI 131 (313)
Q Consensus 105 ~~Geiv~l~GpNGsGKSTLlk~l~gl~ 131 (313)
..+.-+.|.||+|+|||++++.|....
T Consensus 22 ~~~~~vll~G~~GtGKt~lA~~i~~~~ 48 (145)
T 3n70_A 22 ETDIAVWLYGAPGTGRMTGARYLHQFG 48 (145)
T ss_dssp TCCSCEEEESSTTSSHHHHHHHHHHSS
T ss_pred CCCCCEEEECCCCCCHHHHHHHHHHhC
Confidence 455668899999999999999998865
|
| >2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=95.32 E-value=0.0087 Score=50.40 Aligned_cols=24 Identities=13% Similarity=0.025 Sum_probs=20.8
Q ss_pred cEEEEECCCCCcHHHHHHHHHHHh
Q 021362 108 HIVGLAGPPGAGKSTLAAEVVRRI 131 (313)
Q Consensus 108 eiv~l~GpNGsGKSTLlk~l~gl~ 131 (313)
--++|+|+.|+|||||++.+.+-.
T Consensus 10 ~ki~i~G~~~~GKTsli~~l~~~~ 33 (212)
T 2j0v_A 10 IKCVTVGDGAVGKTCMLICYTSNK 33 (212)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEEECCCCCCHHHHHHHHhcCC
Confidence 458999999999999999998643
|
| >2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A* | Back alignment and structure |
|---|
Probab=95.27 E-value=0.0082 Score=50.02 Aligned_cols=24 Identities=21% Similarity=0.231 Sum_probs=20.7
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHH
Q 021362 106 VKHIVGLAGPPGAGKSTLAAEVVR 129 (313)
Q Consensus 106 ~Geiv~l~GpNGsGKSTLlk~l~g 129 (313)
+.-.++|+|+.|+|||||++.+.+
T Consensus 28 ~~~ki~v~G~~~vGKSsLi~~l~~ 51 (192)
T 2b6h_A 28 KQMRILMVGLDAAGKTTILYKLKL 51 (192)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHCS
T ss_pred CccEEEEECCCCCCHHHHHHHHHh
Confidence 445789999999999999998864
|
| >1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=95.20 E-value=0.011 Score=50.74 Aligned_cols=30 Identities=23% Similarity=0.390 Sum_probs=26.0
Q ss_pred ccCCCcEEEEECCCCCcHHHHHHHHHHHhc
Q 021362 103 NVNVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 103 ~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~ 132 (313)
.+++.-.+.|.||.|+||||++.+|+..+.
T Consensus 54 ~iPkkn~ili~GPPGtGKTt~a~ala~~l~ 83 (212)
T 1tue_A 54 GTPKKNCLVFCGPANTGKSYFGMSFIHFIQ 83 (212)
T ss_dssp TCTTCSEEEEESCGGGCHHHHHHHHHHHHT
T ss_pred cCCcccEEEEECCCCCCHHHHHHHHHHHhC
Confidence 366666789999999999999999999884
|
| >4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi} | Back alignment and structure |
|---|
Probab=95.18 E-value=0.0034 Score=53.25 Aligned_cols=22 Identities=32% Similarity=0.459 Sum_probs=19.6
Q ss_pred EEEEECCCCCcHHHHHHHHHHH
Q 021362 109 IVGLAGPPGAGKSTLAAEVVRR 130 (313)
Q Consensus 109 iv~l~GpNGsGKSTLlk~l~gl 130 (313)
-++|+|+.|+|||||++.+.+-
T Consensus 13 ki~vvG~~~~GKSsli~~l~~~ 34 (218)
T 4djt_A 13 KICLIGDGGVGKTTYINRVLDG 34 (218)
T ss_dssp EEEEECCTTSSHHHHHCBCTTC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5789999999999999988854
|
| >1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.12 E-value=0.015 Score=53.18 Aligned_cols=27 Identities=41% Similarity=0.491 Sum_probs=23.8
Q ss_pred CCCcEEEEECCCCCcHHHHHHHHHHHh
Q 021362 105 NVKHIVGLAGPPGAGKSTLAAEVVRRI 131 (313)
Q Consensus 105 ~~Geiv~l~GpNGsGKSTLlk~l~gl~ 131 (313)
.++.-+.|.||.|+|||||++.++...
T Consensus 43 ~~~~~iLL~GppGtGKT~la~ala~~~ 69 (322)
T 1xwi_A 43 TPWRGILLFGPPGTGKSYLAKAVATEA 69 (322)
T ss_dssp CCCSEEEEESSSSSCHHHHHHHHHHHT
T ss_pred CCCceEEEECCCCccHHHHHHHHHHHc
Confidence 455678899999999999999999977
|
| >2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B* | Back alignment and structure |
|---|
Probab=95.12 E-value=0.0088 Score=61.33 Aligned_cols=62 Identities=13% Similarity=0.008 Sum_probs=41.8
Q ss_pred cCCCCCCcCCCcchhhhhhccCceEEEEcCCcc-ccCh----hhHHHHHhhccc--eE-E-EEcChHHHHH
Q 021362 205 YAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYL-FLDG----GVWKDVSSMFDE--KW-F-IEVDLDTAMQ 266 (313)
Q Consensus 205 ~~~~LSgG~kqRv~ia~al~~~ar~Li~d~~~l-llDE----~~~~~l~~l~~~--~i-~-vtHd~~~~~~ 266 (313)
.+-.++.|+.+|..++..+..+.+++++|+... .+|. .+++.+...... .+ + .|||.+.+..
T Consensus 187 ~I~v~T~G~l~r~l~~~~~l~~~~~lIlDEah~R~ld~d~~~~~l~~l~~~~~~~~iIl~SAT~~~~~l~~ 257 (773)
T 2xau_A 187 ILKYMTDGMLLREAMEDHDLSRYSCIILDEAHERTLATDILMGLLKQVVKRRPDLKIIIMSATLDAEKFQR 257 (773)
T ss_dssp SEEEEEHHHHHHHHHHSTTCTTEEEEEECSGGGCCHHHHHHHHHHHHHHHHCTTCEEEEEESCSCCHHHHH
T ss_pred CEEEECHHHHHHHHhhCccccCCCEEEecCccccccchHHHHHHHHHHHHhCCCceEEEEeccccHHHHHH
Confidence 444778999999888888888889999999875 6664 334444443322 23 4 4788776544
|
| >2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A | Back alignment and structure |
|---|
Probab=95.11 E-value=0.025 Score=55.03 Aligned_cols=28 Identities=18% Similarity=0.377 Sum_probs=23.6
Q ss_pred CCCcEEEEECCCCCcHHHHHHHHHHHhc
Q 021362 105 NVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 105 ~~Geiv~l~GpNGsGKSTLlk~l~gl~~ 132 (313)
.+..+++|+|++|+|||||+..|+..+.
T Consensus 99 ~~~~vI~ivG~~GvGKTTl~~kLA~~l~ 126 (504)
T 2j37_W 99 GKQNVIMFVGLQGSGKTTTCSKLAYYYQ 126 (504)
T ss_dssp S--EEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4567999999999999999999998775
|
| >4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A* | Back alignment and structure |
|---|
Probab=95.09 E-value=0.0064 Score=58.30 Aligned_cols=23 Identities=30% Similarity=0.566 Sum_probs=21.0
Q ss_pred EEEEECCCCCcHHHHHHHHHHHh
Q 021362 109 IVGLAGPPGAGKSTLAAEVVRRI 131 (313)
Q Consensus 109 iv~l~GpNGsGKSTLlk~l~gl~ 131 (313)
.++|+|.+|+|||||++.|.|-.
T Consensus 25 ~V~lvG~~nvGKSTL~n~l~~~~ 47 (456)
T 4dcu_A 25 VVAIVGRPNVGKSTIFNRIAGER 47 (456)
T ss_dssp EEEEECSSSSSHHHHHHHHEEEE
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 78999999999999999998853
|
| >1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A* | Back alignment and structure |
|---|
Probab=95.01 E-value=0.014 Score=51.93 Aligned_cols=26 Identities=27% Similarity=0.520 Sum_probs=23.1
Q ss_pred CcEEEEECCCCCcHHHHHHHHHHHhc
Q 021362 107 KHIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 107 Geiv~l~GpNGsGKSTLlk~l~gl~~ 132 (313)
+.-+.|.||+|+|||||++.++..+.
T Consensus 50 ~~~vll~G~~GtGKT~la~~la~~l~ 75 (310)
T 1ofh_A 50 PKNILMIGPTGVGKTEIARRLAKLAN 75 (310)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhC
Confidence 45678999999999999999999875
|
| >1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A* | Back alignment and structure |
|---|
Probab=95.00 E-value=0.037 Score=48.21 Aligned_cols=28 Identities=36% Similarity=0.469 Sum_probs=24.5
Q ss_pred cCCCcEEEEECCCCCcHHHHHHHHHHHh
Q 021362 104 VNVKHIVGLAGPPGAGKSTLAAEVVRRI 131 (313)
Q Consensus 104 i~~Geiv~l~GpNGsGKSTLlk~l~gl~ 131 (313)
..+.-++.+.|..|+|||||++.|+..+
T Consensus 11 ~~~~~i~~~~GkgGvGKTTl~~~La~~l 38 (262)
T 1yrb_A 11 GMASMIVVFVGTAGSGKTTLTGEFGRYL 38 (262)
T ss_dssp TCCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CcceEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 3456789999999999999999999876
|
| >1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A* | Back alignment and structure |
|---|
Probab=94.98 E-value=0.016 Score=57.36 Aligned_cols=28 Identities=21% Similarity=0.269 Sum_probs=25.1
Q ss_pred CCCcEEEEECCCCCcHHHHHHHHHHHhc
Q 021362 105 NVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 105 ~~Geiv~l~GpNGsGKSTLlk~l~gl~~ 132 (313)
++|.++.|.|++||||||+.+.|...+.
T Consensus 394 q~~~~I~l~GlsGSGKSTiA~~La~~L~ 421 (573)
T 1m8p_A 394 TQGFTIFLTGYMNSGKDAIARALQVTLN 421 (573)
T ss_dssp TCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred ccceEEEeecCCCCCHHHHHHHHHHHhc
Confidence 4577999999999999999999998874
|
| >2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV} | Back alignment and structure |
|---|
Probab=94.97 E-value=0.22 Score=43.18 Aligned_cols=26 Identities=23% Similarity=0.314 Sum_probs=20.3
Q ss_pred CCcE-EEEECCCCCcHHHHHHHHHHHh
Q 021362 106 VKHI-VGLAGPPGAGKSTLAAEVVRRI 131 (313)
Q Consensus 106 ~Gei-v~l~GpNGsGKSTLlk~l~gl~ 131 (313)
+|.+ +.+.|+.|+||||++-.++..+
T Consensus 4 ~g~l~I~~~~kgGvGKTt~a~~la~~l 30 (228)
T 2r8r_A 4 RGRLKVFLGAAPGVGKTYAMLQAAHAQ 30 (228)
T ss_dssp CCCEEEEEESSTTSSHHHHHHHHHHHH
T ss_pred CceEEEEEECCCCCcHHHHHHHHHHHH
Confidence 4554 7788999999999976666655
|
| >2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major} | Back alignment and structure |
|---|
Probab=94.95 E-value=0.0081 Score=49.53 Aligned_cols=24 Identities=25% Similarity=0.194 Sum_probs=20.4
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHH
Q 021362 106 VKHIVGLAGPPGAGKSTLAAEVVR 129 (313)
Q Consensus 106 ~Geiv~l~GpNGsGKSTLlk~l~g 129 (313)
+.--++|+|+.|+|||||++.+.+
T Consensus 21 ~~~~i~v~G~~~~GKssli~~l~~ 44 (189)
T 2x77_A 21 RKIRVLMLGLDNAGKTSILYRLHL 44 (189)
T ss_dssp SCEEEEEEEETTSSHHHHHHHTCC
T ss_pred CceEEEEECCCCCCHHHHHHHHHc
Confidence 445689999999999999998853
|
| >1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A* | Back alignment and structure |
|---|
Probab=94.94 E-value=0.014 Score=56.81 Aligned_cols=29 Identities=7% Similarity=0.061 Sum_probs=26.4
Q ss_pred cCCCcEEEEECCCCCcHHHHHHHHHHHhc
Q 021362 104 VNVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 104 i~~Geiv~l~GpNGsGKSTLlk~l~gl~~ 132 (313)
.+.|.++.|+|.+||||||+.+.|+..+.
T Consensus 392 ~~~~~~I~l~GlsGsGKSTIa~~La~~L~ 420 (511)
T 1g8f_A 392 PKQGFSIVLGNSLTVSREQLSIALLSTFL 420 (511)
T ss_dssp GGCCEEEEECTTCCSCHHHHHHHHHHHHT
T ss_pred cccceEEEecccCCCCHHHHHHHHHHHHH
Confidence 35778999999999999999999999985
|
| >3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A | Back alignment and structure |
|---|
Probab=94.94 E-value=0.014 Score=53.99 Aligned_cols=27 Identities=37% Similarity=0.575 Sum_probs=23.5
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHHHhc
Q 021362 106 VKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 106 ~Geiv~l~GpNGsGKSTLlk~l~gl~~ 132 (313)
++.-+.|.||+|+||||+++.|+..+.
T Consensus 50 ~~~~vll~GppGtGKT~la~~ia~~~~ 76 (363)
T 3hws_A 50 GKSNILLIGPTGSGKTLLAETLARLLD 76 (363)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHTT
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHcC
Confidence 455688999999999999999998774
|
| >2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406} | Back alignment and structure |
|---|
Probab=94.89 E-value=0.0045 Score=56.36 Aligned_cols=37 Identities=16% Similarity=0.240 Sum_probs=29.2
Q ss_pred cccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhc
Q 021362 96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 96 ~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~ 132 (313)
+++.+...+..|.-+.|.||+|+|||||++.|+..+.
T Consensus 35 ~~~~l~~~l~~~~~vll~G~pGtGKT~la~~la~~~~ 71 (331)
T 2r44_A 35 MINRLLIGICTGGHILLEGVPGLAKTLSVNTLAKTMD 71 (331)
T ss_dssp HHHHHHHHHHHTCCEEEESCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHcCCeEEEECCCCCcHHHHHHHHHHHhC
Confidence 4444444455577889999999999999999999875
|
| >1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A* | Back alignment and structure |
|---|
Probab=94.89 E-value=0.017 Score=57.72 Aligned_cols=26 Identities=31% Similarity=0.386 Sum_probs=24.4
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHHHh
Q 021362 106 VKHIVGLAGPPGAGKSTLAAEVVRRI 131 (313)
Q Consensus 106 ~Geiv~l~GpNGsGKSTLlk~l~gl~ 131 (313)
+|.++.|.|.+||||||+.+.|+..+
T Consensus 51 ~g~lIvLtGlsGSGKSTlAr~La~~L 76 (630)
T 1x6v_B 51 RGCTVWLTGLSGAGKTTVSMALEEYL 76 (630)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHH
Confidence 67899999999999999999999987
|
| >3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D* | Back alignment and structure |
|---|
Probab=94.88 E-value=0.017 Score=53.15 Aligned_cols=28 Identities=29% Similarity=0.510 Sum_probs=25.1
Q ss_pred CCCcEEEEECCCCCcHHHHHHHHHHHhc
Q 021362 105 NVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 105 ~~Geiv~l~GpNGsGKSTLlk~l~gl~~ 132 (313)
.+|..+.|.||+|+|||||++.++..+.
T Consensus 68 ~~~~~vLl~GppGtGKT~la~~la~~l~ 95 (368)
T 3uk6_A 68 IAGRAVLIAGQPGTGKTAIAMGMAQALG 95 (368)
T ss_dssp CTTCEEEEEESTTSSHHHHHHHHHHHHC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHhc
Confidence 4567899999999999999999999885
|
| >1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A* | Back alignment and structure |
|---|
Probab=94.82 E-value=0.017 Score=51.01 Aligned_cols=28 Identities=39% Similarity=0.539 Sum_probs=24.1
Q ss_pred CCCcEEEEECCCCCcHHHHHHHHHHHhc
Q 021362 105 NVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 105 ~~Geiv~l~GpNGsGKSTLlk~l~gl~~ 132 (313)
....-+.|.||+|+|||||++.|+....
T Consensus 62 ~~~~~vLl~G~~GtGKT~la~~ia~~~~ 89 (272)
T 1d2n_A 62 TPLVSVLLEGPPHSGKTALAAKIAEESN 89 (272)
T ss_dssp CSEEEEEEECSTTSSHHHHHHHHHHHHT
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHhC
Confidence 4456788999999999999999999764
|
| >1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1 | Back alignment and structure |
|---|
Probab=94.80 E-value=0.017 Score=53.98 Aligned_cols=29 Identities=31% Similarity=0.508 Sum_probs=25.5
Q ss_pred ccCCCcEEEEECCCCCcHHHHHHHHHHHh
Q 021362 103 NVNVKHIVGLAGPPGAGKSTLAAEVVRRI 131 (313)
Q Consensus 103 ~i~~Geiv~l~GpNGsGKSTLlk~l~gl~ 131 (313)
-+++|.++.|.||+|+|||||+..++...
T Consensus 70 Gl~~G~li~I~G~pGsGKTtlal~la~~~ 98 (366)
T 1xp8_A 70 GIPRGRITEIYGPESGGKTTLALAIVAQA 98 (366)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CccCCcEEEEEcCCCCChHHHHHHHHHHH
Confidence 47899999999999999999998777654
|
| >1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=94.80 E-value=0.015 Score=52.28 Aligned_cols=26 Identities=27% Similarity=0.323 Sum_probs=22.7
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHHHh
Q 021362 106 VKHIVGLAGPPGAGKSTLAAEVVRRI 131 (313)
Q Consensus 106 ~Geiv~l~GpNGsGKSTLlk~l~gl~ 131 (313)
.+-.++|+|.+|+|||||+|.|.|..
T Consensus 119 ~~~~v~~vG~~nvGKSsliN~l~~~~ 144 (282)
T 1puj_A 119 RAIRALIIGIPNVGKSTLINRLAKKN 144 (282)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred CCceEEEEecCCCchHHHHHHHhcCc
Confidence 44579999999999999999999865
|
| >3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ... | Back alignment and structure |
|---|
Probab=94.79 E-value=0.011 Score=50.33 Aligned_cols=23 Identities=26% Similarity=0.437 Sum_probs=20.1
Q ss_pred EEEEECCCCCcHHHHHHH-HHHHh
Q 021362 109 IVGLAGPPGAGKSTLAAE-VVRRI 131 (313)
Q Consensus 109 iv~l~GpNGsGKSTLlk~-l~gl~ 131 (313)
.++|+|+.|+|||||++. +.|..
T Consensus 17 ki~v~G~~~~GKSsli~~~~~~~~ 40 (221)
T 3gj0_A 17 KLVLVGDGGTGKTTFVKRHLTGEF 40 (221)
T ss_dssp EEEEEECTTSSHHHHHTTBHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHcCCC
Confidence 579999999999999998 66664
|
| >2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=94.79 E-value=0.019 Score=52.86 Aligned_cols=27 Identities=26% Similarity=0.349 Sum_probs=23.9
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHHHhc
Q 021362 106 VKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 106 ~Geiv~l~GpNGsGKSTLlk~l~gl~~ 132 (313)
.+..+.|.||.|+|||||++.++..+.
T Consensus 44 ~~~~vll~G~~G~GKT~la~~l~~~~~ 70 (384)
T 2qby_B 44 VKFSNLFLGLTGTGKTFVSKYIFNEIE 70 (384)
T ss_dssp CCCEEEEEECTTSSHHHHHHHHHHHHH
T ss_pred CCCcEEEECCCCCCHHHHHHHHHHHHH
Confidence 356899999999999999999998874
|
| >3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.77 E-value=0.021 Score=52.90 Aligned_cols=28 Identities=25% Similarity=0.436 Sum_probs=24.3
Q ss_pred CCCcEEEEECCCCCcHHHHHHHHHHHhc
Q 021362 105 NVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 105 ~~Geiv~l~GpNGsGKSTLlk~l~gl~~ 132 (313)
....-+.|.||+|+|||||++.|+....
T Consensus 115 ~~~~~vLl~GppGtGKT~la~aia~~~~ 142 (357)
T 3d8b_A 115 GPPKGILLFGPPGTGKTLIGKCIASQSG 142 (357)
T ss_dssp SCCSEEEEESSTTSSHHHHHHHHHHHTT
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHcC
Confidence 4566789999999999999999998764
|
| >2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3} | Back alignment and structure |
|---|
Probab=94.72 E-value=0.022 Score=51.79 Aligned_cols=25 Identities=32% Similarity=0.365 Sum_probs=23.1
Q ss_pred CcEEEEECCCCCcHHHHHHHHHHHh
Q 021362 107 KHIVGLAGPPGAGKSTLAAEVVRRI 131 (313)
Q Consensus 107 Geiv~l~GpNGsGKSTLlk~l~gl~ 131 (313)
+.-+.|.||.|+|||+|+++|+..+
T Consensus 152 ~~~lll~G~~GtGKT~La~aia~~~ 176 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMAHEL 176 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHH
Confidence 6789999999999999999999876
|
| >3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C | Back alignment and structure |
|---|
Probab=94.70 E-value=0.022 Score=51.74 Aligned_cols=28 Identities=43% Similarity=0.557 Sum_probs=24.0
Q ss_pred CCCcEEEEECCCCCcHHHHHHHHHHHhc
Q 021362 105 NVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 105 ~~Geiv~l~GpNGsGKSTLlk~l~gl~~ 132 (313)
.+..-+.|.||+|+|||+|++.|+....
T Consensus 49 ~~~~~vLl~GppGtGKT~la~aia~~~~ 76 (322)
T 3eie_A 49 KPTSGILLYGPPGTGKSYLAKAVATEAN 76 (322)
T ss_dssp CCCCEEEEECSSSSCHHHHHHHHHHHHT
T ss_pred CCCCeEEEECCCCCcHHHHHHHHHHHHC
Confidence 3455688999999999999999999874
|
| >2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9 | Back alignment and structure |
|---|
Probab=94.70 E-value=0.045 Score=52.23 Aligned_cols=28 Identities=29% Similarity=0.388 Sum_probs=24.8
Q ss_pred CCCcEEEEECCCCCcHHHHHHHHHHHhc
Q 021362 105 NVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 105 ~~Geiv~l~GpNGsGKSTLlk~l~gl~~ 132 (313)
.+..+++++|++|+||||+.-.|+..+.
T Consensus 98 ~~~~vI~ivG~~GvGKTT~a~~LA~~l~ 125 (433)
T 2xxa_A 98 QPPAVVLMAGLQGAGKTTSVGKLGKFLR 125 (433)
T ss_dssp SSSEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4567999999999999999999998885
|
| >3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=93.66 E-value=0.0058 Score=51.24 Aligned_cols=23 Identities=17% Similarity=0.164 Sum_probs=19.8
Q ss_pred cEEEEECCCCCcHHHHHHHHHHH
Q 021362 108 HIVGLAGPPGAGKSTLAAEVVRR 130 (313)
Q Consensus 108 eiv~l~GpNGsGKSTLlk~l~gl 130 (313)
--++|+|+.|+|||||++.+.+-
T Consensus 31 ~ki~v~G~~~~GKSsli~~l~~~ 53 (204)
T 3th5_A 31 IKCVVVGDGAVGKTCLLISYTTN 53 (204)
Confidence 35899999999999999888753
|
| >2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A* | Back alignment and structure |
|---|
Probab=94.64 E-value=0.016 Score=53.17 Aligned_cols=29 Identities=17% Similarity=0.228 Sum_probs=25.2
Q ss_pred cccCCCcEEEEECCCCCcHHHHHHHHHHH
Q 021362 102 SNVNVKHIVGLAGPPGAGKSTLAAEVVRR 130 (313)
Q Consensus 102 l~i~~Geiv~l~GpNGsGKSTLlk~l~gl 130 (313)
-.+.+|.++.|.||.|+|||||+..++..
T Consensus 118 GGi~~gsviLI~GpPGsGKTtLAlqlA~~ 146 (331)
T 2vhj_A 118 GHRYASGMVIVTGKGNSGKTPLVHALGEA 146 (331)
T ss_dssp TEEEESEEEEEECSCSSSHHHHHHHHHHH
T ss_pred CCCCCCcEEEEEcCCCCCHHHHHHHHHHh
Confidence 35778888999999999999999998764
|
| >3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA capture mechanism, ATP-binding, hydrolase, nucleotide-binding, RN binding; 2.35A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=94.63 E-value=0.023 Score=53.49 Aligned_cols=33 Identities=27% Similarity=0.398 Sum_probs=29.4
Q ss_pred cccccCCCcEEEEECCCCCcHHHHHHHHHHHhc
Q 021362 100 LASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 100 vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~ 132 (313)
.=+.+.+|+..+|+|++|+|||||+..|+....
T Consensus 168 ~l~PigrGQR~lIfg~~g~GKT~Ll~~Ia~~i~ 200 (427)
T 3l0o_A 168 LFAPIGKGQRGMIVAPPKAGKTTILKEIANGIA 200 (427)
T ss_dssp HHSCCBTTCEEEEEECTTCCHHHHHHHHHHHHH
T ss_pred hcccccCCceEEEecCCCCChhHHHHHHHHHHh
Confidence 446789999999999999999999999988765
|
| >1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2 | Back alignment and structure |
|---|
Probab=94.61 E-value=0.013 Score=55.36 Aligned_cols=23 Identities=30% Similarity=0.442 Sum_probs=19.6
Q ss_pred EEEEECCCCCcHHHHHHHHHHHh
Q 021362 109 IVGLAGPPGAGKSTLAAEVVRRI 131 (313)
Q Consensus 109 iv~l~GpNGsGKSTLlk~l~gl~ 131 (313)
.++|+|.+++|||||++.|.|.-
T Consensus 2 kI~ivG~pnvGKSTL~n~L~~~~ 24 (397)
T 1wxq_A 2 EIGVVGKPNVGKSTFFSAATLVD 24 (397)
T ss_dssp EEEEEECTTSSHHHHHHHHHC--
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 37999999999999999998754
|
| >2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi} | Back alignment and structure |
|---|
Probab=94.58 E-value=0.0096 Score=53.87 Aligned_cols=25 Identities=24% Similarity=0.219 Sum_probs=22.2
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHHH
Q 021362 106 VKHIVGLAGPPGAGKSTLAAEVVRR 130 (313)
Q Consensus 106 ~Geiv~l~GpNGsGKSTLlk~l~gl 130 (313)
.|.++.|.||.|+|||||++.+...
T Consensus 30 ~~~~v~i~G~~G~GKT~Ll~~~~~~ 54 (350)
T 2qen_A 30 NYPLTLLLGIRRVGKSSLLRAFLNE 54 (350)
T ss_dssp HCSEEEEECCTTSSHHHHHHHHHHH
T ss_pred cCCeEEEECCCcCCHHHHHHHHHHH
Confidence 3689999999999999999998764
|
| >2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A* | Back alignment and structure |
|---|
Probab=94.57 E-value=0.024 Score=55.40 Aligned_cols=28 Identities=25% Similarity=0.535 Sum_probs=24.1
Q ss_pred CCCcEEEEECCCCCcHHHHHHHHHHHhc
Q 021362 105 NVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 105 ~~Geiv~l~GpNGsGKSTLlk~l~gl~~ 132 (313)
....++.++|.+||||||+.+.|+..+.
T Consensus 33 ~~~~lIvlvGlpGSGKSTia~~La~~L~ 60 (520)
T 2axn_A 33 NSPTVIVMVGLPARGKTYISKKLTRYLN 60 (520)
T ss_dssp CCCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 3456899999999999999999987764
|
| >4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=94.57 E-value=0.025 Score=53.92 Aligned_cols=29 Identities=34% Similarity=0.541 Sum_probs=24.5
Q ss_pred cCCCcEEEEECCCCCcHHHHHHHHHHHhc
Q 021362 104 VNVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 104 i~~Geiv~l~GpNGsGKSTLlk~l~gl~~ 132 (313)
+.+..=+.|.||+|+|||+|++.|++...
T Consensus 203 ~~~prGiLL~GPPGtGKT~lakAiA~~~~ 231 (428)
T 4b4t_K 203 IDPPRGVLLYGPPGTGKTMLVKAVANSTK 231 (428)
T ss_dssp CCCCCEEEEESCTTTTHHHHHHHHHHHHT
T ss_pred CCCCceEEEECCCCCCHHHHHHHHHHHhC
Confidence 44445578999999999999999999885
|
| >1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B* | Back alignment and structure |
|---|
Probab=94.56 E-value=0.0087 Score=54.95 Aligned_cols=24 Identities=25% Similarity=0.475 Sum_probs=22.2
Q ss_pred EEEEECCCCCcHHHHHHHHHHHhc
Q 021362 109 IVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 109 iv~l~GpNGsGKSTLlk~l~gl~~ 132 (313)
.+.|.||.|+|||||++.++..+.
T Consensus 40 ~~ll~G~~G~GKT~la~~la~~l~ 63 (373)
T 1jr3_A 40 AYLFSGTRGVGKTSIARLLAKGLN 63 (373)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 588999999999999999999885
|
| >3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP} | Back alignment and structure |
|---|
Probab=94.53 E-value=0.014 Score=56.26 Aligned_cols=27 Identities=26% Similarity=0.319 Sum_probs=23.6
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHHHhc
Q 021362 106 VKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 106 ~Geiv~l~GpNGsGKSTLlk~l~gl~~ 132 (313)
.|-.++|+|+.|+|||||++.|.|...
T Consensus 223 ~~~kV~ivG~~nvGKSSLln~L~~~~~ 249 (462)
T 3geh_A 223 TGLKVAIVGRPNVGKSSLLNAWSQSDR 249 (462)
T ss_dssp HCEEEEEEECTTSSHHHHHHHHHHHHB
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCc
Confidence 455699999999999999999999753
|
| >4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=94.52 E-value=0.024 Score=54.19 Aligned_cols=30 Identities=40% Similarity=0.566 Sum_probs=25.2
Q ss_pred ccCCCcEEEEECCCCCcHHHHHHHHHHHhc
Q 021362 103 NVNVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 103 ~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~ 132 (313)
.+.+..=+.|.||+|+|||+|+++|++...
T Consensus 211 g~~~prGvLL~GPPGtGKTllAkAiA~e~~ 240 (437)
T 4b4t_L 211 GIKPPKGVLLYGPPGTGKTLLAKAVAATIG 240 (437)
T ss_dssp CCCCCCEEEEESCTTSSHHHHHHHHHHHHT
T ss_pred CCCCCCeEEEECCCCCcHHHHHHHHHHHhC
Confidence 345555678899999999999999999875
|
| >4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=94.49 E-value=0.025 Score=54.06 Aligned_cols=30 Identities=30% Similarity=0.498 Sum_probs=25.3
Q ss_pred ccCCCcEEEEECCCCCcHHHHHHHHHHHhc
Q 021362 103 NVNVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 103 ~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~ 132 (313)
.+.+..=+.|.||+|+|||+|+++|++...
T Consensus 211 g~~~prGvLLyGPPGTGKTllAkAiA~e~~ 240 (434)
T 4b4t_M 211 GIRAPKGALMYGPPGTGKTLLARACAAQTN 240 (434)
T ss_dssp CCCCCCEEEEESCTTSSHHHHHHHHHHHHT
T ss_pred CCCCCCeeEEECcCCCCHHHHHHHHHHHhC
Confidence 345555678999999999999999999875
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 313 | ||||
| d1sq5a_ | 308 | c.37.1.6 (A:) Pantothenate kinase PanK {Escherichi | 1e-24 | |
| d1a7ja_ | 288 | c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sph | 1e-19 | |
| d1uj2a_ | 213 | c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Ho | 1e-19 | |
| d1rz3a_ | 198 | c.37.1.6 (A:) Hypothetical protein rbstp0775 {Baci | 2e-15 | |
| d1odfa_ | 286 | c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker' | 4e-13 | |
| d2qm8a1 | 323 | c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylo | 5e-05 | |
| d1qhxa_ | 178 | c.37.1.3 (A:) Chloramphenicol phosphotransferase { | 7e-05 | |
| d2p67a1 | 327 | c.37.1.10 (A:1-327) LAO/AO transport system kinase | 1e-04 | |
| d1knqa_ | 171 | c.37.1.17 (A:) Gluconate kinase {Escherichia coli | 2e-04 | |
| d1ly1a_ | 152 | c.37.1.1 (A:) Polynucleotide kinase, kinase domain | 7e-04 | |
| d2bdta1 | 176 | c.37.1.25 (A:1-176) Hypothetical protein BH3686 {B | 7e-04 | |
| d1np6a_ | 170 | c.37.1.10 (A:) Molybdopterin-guanine dinucleotide | 0.002 | |
| d1w5sa2 | 287 | c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-t | 0.002 | |
| d1bifa1 | 213 | c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fruct | 0.003 | |
| d1zp6a1 | 176 | c.37.1.25 (A:6-181) Hypothetical protein Atu3015 { | 0.004 |
| >d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]} Length = 308 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Pantothenate kinase PanK species: Escherichia coli [TaxId: 562]
Score = 99.0 bits (246), Expect = 1e-24
Identities = 39/229 (17%), Positives = 83/229 (36%), Gaps = 44/229 (19%)
Query: 109 IVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLD 168
I+ +AG GKST A + +++ + V ++ DGF L
Sbjct: 82 IISIAGSVAVGKSTTARVLQALLSRW-----------PEHRRVE-LITTDGFLHPNQVLK 129
Query: 169 AMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQG-SVYAPSFDHGVGDPVEDDILVGLQH 227
+ ++G P +++ L+ + +L++ +V AP + H + D + D +Q
Sbjct: 130 E----RGLMKKKGFPESYDMHRLVKFVSDLKSGVPNVTAPVYSHLIYDVIPDGDKTVVQP 185
Query: 228 KVVIVDGNYLFLDGGVWKD------VSSMFDEKWFIEVDLDTAMQRVLKRHIST--GKPP 279
++I++G + G + VS D +++ D + R + G
Sbjct: 186 DILILEGLNVLQSGMDYPHDPHHVFVSDFVDFSIYVDAPEDLLQTWYINRFLKFREGAFT 245
Query: 280 DVAKWRIEYND------------------RPNAEL-IMKSKKNADLVIK 309
D + Y N + I+ +++ A L++
Sbjct: 246 DPDSYFHNYAKLTKEEAIKTAMTLWKEINWLNLKQNILPTRERASLILT 294
|
| >d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]} Length = 288 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Phosphoribulokinase species: Rhodobacter sphaeroides [TaxId: 1063]
Score = 85.0 bits (210), Expect = 1e-19
Identities = 30/223 (13%), Positives = 69/223 (30%), Gaps = 33/223 (14%)
Query: 106 VKH-IVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYL 164
KH I+ + G GAG ST+ ++I+ ++ A + D FH +
Sbjct: 2 KKHPIISVTGSSGAGTSTVK----HTFDQIFRREGVK----------AVSIEGDAFHRFN 47
Query: 165 -SQLDAMEDPKEAHARRG----APWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVED 219
+ + A D + A + L + G ++ H +
Sbjct: 48 RADMKAELDRRYAAGDATFSHFSYEANELKELERVFREYGETGQGRTRTYVHDDAEAART 107
Query: 220 DILVGLQ---------HKVVIVDGNYLFLDGGVWKDVSSMFDEKWFIEVDLDTAMQRVLK 270
+ G ++ +G + + +++ + D K + ++ + +
Sbjct: 108 GVAPGNFTDWRDFDSDSHLLFYEGLHGAVVNS-EVNIAGLADLKIGVVPVINLEWIQKIH 166
Query: 271 RHIST-GKPPDVAKWRIEYNDRPNAEL-IMKSKKNADLVIKSI 311
R +T G + I I+ D+ + +
Sbjct: 167 RDRATRGYTTEAVTDVIL-RRMHAYVHCIVPQFSQTDINFQRV 208
|
| >d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]} Length = 213 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Uridine-cytidine kinase 2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 83.1 bits (204), Expect = 1e-19
Identities = 46/204 (22%), Positives = 86/204 (42%), Gaps = 17/204 (8%)
Query: 109 IVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLD 168
++G++G +GKS++ A++V+ + + +L D F+ L+
Sbjct: 4 LIGVSGGTASGKSSVCAKIVQLLGQNEVD---------YRQKQVVILSQDSFYRVLTSEQ 54
Query: 169 AMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHK 228
+ K P F+ L+L LK + +V P +D E+ + V
Sbjct: 55 KAKALKGQFN-FDHPDAFDNELILKTLKEITEGKTVQIPVYDFVSHSRKEETVTVY-PAD 112
Query: 229 VVIVDGNYLFLDGGVWKDVSSMFDEKWFIEVDLDTAMQRVLKRHIST-GKPPDVAKWRIE 287
VV+ +G F ++V +F K F++ D DT + R + R IS G+ + +
Sbjct: 113 VVLFEGILAFYS----QEVRDLFQMKLFVDTDADTRLSRRVLRDISERGRDLEQILSQYI 168
Query: 288 YNDRPNAEL-IMKSKKNADLVIKS 310
+P E + +KK AD++I
Sbjct: 169 TFVKPAFEEFCLPTKKYADVIIPR 192
|
| >d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]} Length = 198 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein rbstp0775 species: Bacillus stearothermophilus [TaxId: 1422]
Score = 70.9 bits (172), Expect = 2e-15
Identities = 29/226 (12%), Positives = 67/226 (29%), Gaps = 31/226 (13%)
Query: 83 MDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSF 142
+ + D L + +L A + ++G+ G +GK+TLA ++ + + +
Sbjct: 3 LRDRIDFLCKTIL-----AIKTAGRLVLGIDGLSRSGKTTLANQLSQTLREQGISV---- 53
Query: 143 DSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQG 202
V MD + ++ + + L + L+
Sbjct: 54 ----------CVFHMDDHIVERAKRYHTGNEEWFEYYYLQWDVE--WLTHQLFRQLKASH 101
Query: 203 SVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEKWFIEVDLD 262
+ P +DH + + + ++I K+ FD +++ +
Sbjct: 102 QLTLPFYDHETDTHSKRTVYLSDSDMIMIEGVFLQ------RKEWRPFFDFVVYLDCPRE 155
Query: 263 TAMQRVLKRHISTGKPPDVAKWRIEYNDRPNAELIMKSKKNADLVI 308
R + + R + K AD+V
Sbjct: 156 IRFARENDQV---KQNIQKFINRYW-KAEDYYLETEEPIKRADVVF 197
|
| >d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 286 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein Ygr205W species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 66.0 bits (160), Expect = 4e-13
Identities = 39/239 (16%), Positives = 74/239 (30%), Gaps = 30/239 (12%)
Query: 82 CMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS 141
+D + L + + + + +GP G+GKS + ++ + + + + S
Sbjct: 4 VLDYTIEFLDKYIPE--WFETGNKCPLFIFFSGPQGSGKSFTSIQIYNHLMEKYGGEKS- 60
Query: 142 FDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHA---RRGAPWTFNPLLLLNCLKNL 198
+D F+L + + + + RG P T + LL L +
Sbjct: 61 ----------IGYASIDDFYLTHEDQLKLNEQFKNNKLLQGRGLPGTHDMKLLQEVLNTI 110
Query: 199 RNQGS----------VYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLF----LDGGVW 244
N Y S G GD + L + I++G +L L G
Sbjct: 111 FNNNEHPDQDTVVLPKYDKSQFKGEGDRCPTGQKIKLPVDIFILEGWFLGFNPILQGIEN 170
Query: 245 KDVSSMFDEKWFIEVDLDTAMQRVLKRHISTGKPPDVAKWRIEYNDRPNAELIMKSKKN 303
D+ + ++ + + S G Y R E + SK
Sbjct: 171 NDLLTGDMVDVNAKLFFYSDLLWRNPEIKSLGIVFTTDNINNVYGWRLQQEHELISKVG 229
|
| >d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]} Length = 323 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Metallochaperone MeaB species: Methylobacterium extorquens [TaxId: 408]
Score = 41.8 bits (97), Expect = 5e-05
Identities = 17/69 (24%), Positives = 27/69 (39%), Gaps = 4/69 (5%)
Query: 73 REIPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN 132
R I + E+R + A + L+ A+ VG+ G PG GKST + +
Sbjct: 21 RAITLAESR--RADHRAAVRDLI--DAVLPQTGRAIRVGITGVPGVGKSTTIDALGSLLT 76
Query: 133 KIWPQKASS 141
+ A
Sbjct: 77 AAGHKVAVL 85
|
| >d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]} Length = 178 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Chloramphenicol phosphotransferase domain: Chloramphenicol phosphotransferase species: Streptomyces venezuelae [TaxId: 54571]
Score = 40.8 bits (94), Expect = 7e-05
Identities = 21/202 (10%), Positives = 41/202 (20%), Gaps = 46/202 (22%)
Query: 107 KHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQ 166
++ L G AGKS + + + P+ +F + + +
Sbjct: 3 TRMIILNGGSSAGKSGIVRCLQSVL----PEPWLAFGVDSLIEAMPLKMQSAEGGIEFDA 58
Query: 167 LDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQ 226
+ E A GA + + + D
Sbjct: 59 DGGVSIGPEFRALEGAWAEGVVAMARAGARII----------IDDVFLGGAAAQERW--- 105
Query: 227 HKVVIVDGNYLFLDGGVWKDVSSMFDEKWFIEVDLDTAMQRVLKRHISTGKPPDVAKWRI 286
D V + D A R R + +A +
Sbjct: 106 --------RSFVGDLDVLWV---------GVRCDGAVAEGRETAR---GDRVAGMAAKQA 145
Query: 287 EYNDRPNAELIMKSKKNADLVI 308
D+ +
Sbjct: 146 YVVHEG---------VEYDVEV 158
|
| >d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]} Length = 327 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: LAO/AO transport system kinase ArgK species: Escherichia coli [TaxId: 562]
Score = 41.0 bits (95), Expect = 1e-04
Identities = 17/63 (26%), Positives = 29/63 (46%), Gaps = 4/63 (6%)
Query: 73 REIPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN 132
+ + +VE+R + AL+ +LL A+ +G+ G PGAGKST +
Sbjct: 24 QAMTLVESR--HPRHQALSTQLL--DAIMPYCGNTLRLGVTGTPGAGKSTFLEAFGMLLI 79
Query: 133 KIW 135
+
Sbjct: 80 REG 82
|
| >d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]} Length = 171 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Gluconate kinase domain: Gluconate kinase species: Escherichia coli [TaxId: 562]
Score = 39.2 bits (90), Expect = 2e-04
Identities = 11/28 (39%), Positives = 18/28 (64%)
Query: 108 HIVGLAGPPGAGKSTLAAEVVRRINKIW 135
HI L G G+GKS +A+EV +++ +
Sbjct: 7 HIYVLMGVSGSGKSAVASEVAHQLHAAF 34
|
| >d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]} Length = 152 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Polynucleotide kinase, kinase domain species: Bacteriophage T4 [TaxId: 10665]
Score = 37.4 bits (85), Expect = 7e-04
Identities = 11/29 (37%), Positives = 16/29 (55%)
Query: 107 KHIVGLAGPPGAGKSTLAAEVVRRINKIW 135
K I+ G PG+GKST A E + + +
Sbjct: 2 KKIILTIGCPGSGKSTWAREFIAKNPGFY 30
|
| >d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]} Length = 176 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein BH3686 species: Bacillus halodurans [TaxId: 86665]
Score = 37.7 bits (86), Expect = 7e-04
Identities = 8/26 (30%), Positives = 14/26 (53%)
Query: 107 KHIVGLAGPPGAGKSTLAAEVVRRIN 132
K + + GP G GKST + +++
Sbjct: 2 KKLYIITGPAGVGKSTTCKRLAAQLD 27
|
| >d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]} Length = 170 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Escherichia coli [TaxId: 562]
Score = 36.5 bits (83), Expect = 0.002
Identities = 6/25 (24%), Positives = 13/25 (52%)
Query: 109 IVGLAGPPGAGKSTLAAEVVRRINK 133
++ A G GK+TL +++ +
Sbjct: 4 LLAFAAWSGTGKTTLLKKLIPALCA 28
|
| >d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]} Length = 287 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6-like protein APE0152, N-terminal domain species: Aeropyrum pernix [TaxId: 56636]
Score = 37.0 bits (84), Expect = 0.002
Identities = 23/100 (23%), Positives = 34/100 (34%), Gaps = 2/100 (2%)
Query: 82 CMDEVYDALAQRLL-PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS 140
+ALA+ L + A +V I G G G GK+TLA V+R+++ K
Sbjct: 20 VRRGEAEALARIYLNRLLSGAGLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSE-AAAKEG 78
Query: 141 SFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARR 180
Q L + Q + A A
Sbjct: 79 LTVKQAYVNAFNAPNLYTILSLIVRQTGYPIQVRGAPALD 118
|
| >d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 213 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 35.7 bits (81), Expect = 0.003
Identities = 7/27 (25%), Positives = 16/27 (59%)
Query: 108 HIVGLAGPPGAGKSTLAAEVVRRINKI 134
++ + G P GK+ ++ ++ R +N I
Sbjct: 3 TLIVMVGLPARGKTYISKKLTRYLNFI 29
|
| >d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]} Length = 176 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein Atu3015 species: Agrobacterium tumefaciens [TaxId: 358]
Score = 35.3 bits (80), Expect = 0.004
Identities = 10/24 (41%), Positives = 15/24 (62%)
Query: 109 IVGLAGPPGAGKSTLAAEVVRRIN 132
I+ L+G PG+GKST+A +
Sbjct: 6 ILLLSGHPGSGKSTIAEALANLPG 29
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 313 | |||
| d2awna2 | 232 | Maltose transport protein MalK, N-terminal domain | 100.0 | |
| d1g2912 | 240 | Maltose transport protein MalK, N-terminal domain | 100.0 | |
| d1v43a3 | 239 | Hypothetical protein PH0022, N-terminal domain {Py | 100.0 | |
| d1oxxk2 | 242 | Glucose transport protein GlcV, N-terminal domain | 100.0 | |
| d3dhwc1 | 240 | Methionine import ATP-binding protein MetN {Escher | 100.0 | |
| d3d31a2 | 229 | Sulfate/molybdate ABC transporter, ATP-binding pro | 100.0 | |
| d1b0ua_ | 258 | ATP-binding subunit of the histidine permease {Sal | 100.0 | |
| d1l2ta_ | 230 | MJ0796 {Archaeon Methanococcus jannaschii [TaxId: | 100.0 | |
| d1ji0a_ | 240 | Branched chain aminoacid ABC transporter {Thermoto | 100.0 | |
| d1g6ha_ | 254 | MJ1267 {Archaeon Methanococcus jannaschii [TaxId: | 100.0 | |
| d1vpla_ | 238 | Putative ABC transporter TM0544 {Thermotoga mariti | 100.0 | |
| d2onka1 | 240 | Molybdate/tungstate import ATP-binding protein Wtp | 100.0 | |
| d1mv5a_ | 242 | Multidrug resistance ABC transporter LmrA, C-termi | 100.0 | |
| d1jj7a_ | 251 | Peptide transporter Tap1, C-terminal ABC domain {H | 100.0 | |
| d2pmka1 | 241 | Haemolysin B ATP-binding protein {Escherichia coli | 100.0 | |
| d3b60a1 | 253 | Multidrug resistance ABC transporter MsbA, C-termi | 100.0 | |
| d2hyda1 | 255 | Putative multidrug export ATP-binding/permease pro | 100.0 | |
| d1l7vc_ | 231 | ABC transporter involved in vitamin B12 uptake, Bt | 100.0 | |
| d1sgwa_ | 200 | Putative ABC transporter PF0895 {Pyrococcus furios | 100.0 | |
| d1r0wa_ | 281 | Cystic fibrosis transmembrane conductance regulato | 100.0 | |
| d1sq5a_ | 308 | Pantothenate kinase PanK {Escherichia coli [TaxId: | 99.64 | |
| d1uj2a_ | 213 | Uridine-cytidine kinase 2 {Human (Homo sapiens) [T | 99.52 | |
| d1a7ja_ | 288 | Phosphoribulokinase {Rhodobacter sphaeroides [TaxI | 99.5 | |
| g1f2t.1 | 292 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 99.34 | |
| d1ye8a1 | 178 | Hypothetical kinase-like protein Aq_1292 {Aquifex | 99.29 | |
| d1rz3a_ | 198 | Hypothetical protein rbstp0775 {Bacillus stearothe | 98.89 | |
| g1ii8.1 | 369 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 98.87 | |
| d1odfa_ | 286 | Hypothetical protein Ygr205W {Baker's yeast (Sacch | 98.65 | |
| g1xew.1 | 329 | Smc head domain {Pyrococcus furiosus [TaxId: 2261] | 97.81 | |
| d1np6a_ | 170 | Molybdopterin-guanine dinucleotide biosynthesis pr | 97.81 | |
| d1znwa1 | 182 | Guanylate kinase {Mycobacterium tuberculosis [TaxI | 97.74 | |
| d1knqa_ | 171 | Gluconate kinase {Escherichia coli [TaxId: 562]} | 97.72 | |
| d1m8pa3 | 183 | ATP sulfurylase C-terminal domain {Fungus (Penicil | 97.72 | |
| d1qhla_ | 222 | Cell division protein MukB {Escherichia coli [TaxI | 97.7 | |
| d2i3ba1 | 189 | Cancer-related NTPase, C1orf57 {Human (Homo sapien | 97.67 | |
| d1zp6a1 | 176 | Hypothetical protein Atu3015 {Agrobacterium tumefa | 97.65 | |
| d1xjca_ | 165 | Molybdopterin-guanine dinucleotide biosynthesis pr | 97.62 | |
| d1qhxa_ | 178 | Chloramphenicol phosphotransferase {Streptomyces v | 97.56 | |
| d1w1wa_ | 427 | Smc head domain {Baker's yeast (Saccharomyces cere | 97.54 | |
| d1khta_ | 190 | Adenylate kinase {Archaeon Methanococcus voltae [T | 97.48 | |
| d1lw7a2 | 192 | Transcriptional regulator NadR, ribosylnicotinamid | 97.48 | |
| d1yrba1 | 244 | ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss | 97.47 | |
| d1e69a_ | 308 | Smc head domain {Thermotoga maritima [TaxId: 2336] | 97.45 | |
| d1y63a_ | 174 | Probable kinase LmjF30.1890 {Leishmania major [Tax | 97.45 | |
| d1ly1a_ | 152 | Polynucleotide kinase, kinase domain {Bacteriophag | 97.44 | |
| d1x6va3 | 195 | Adenosine-5'phosphosulfate kinase (APS kinase) {Hu | 97.42 | |
| d2bdta1 | 176 | Hypothetical protein BH3686 {Bacillus halodurans [ | 97.41 | |
| d1s96a_ | 205 | Guanylate kinase {Escherichia coli [TaxId: 562]} | 97.4 | |
| d1kaga_ | 169 | Shikimate kinase (AroK) {Escherichia coli [TaxId: | 97.39 | |
| d1u0la2 | 225 | Probable GTPase EngC (YjeQ), C-terminal domain {Th | 97.36 | |
| d1okkd2 | 207 | GTPase domain of the signal recognition particle r | 97.33 | |
| d1rkba_ | 173 | Adenylate kinase {Human (Homo sapiens), isoenzyme | 97.31 | |
| d1qf9a_ | 194 | UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4 | 97.29 | |
| d1vmaa2 | 213 | GTPase domain of the signal recognition particle r | 97.27 | |
| d1ukza_ | 196 | Uridylate kinase {Baker's yeast (Saccharomyces cer | 97.23 | |
| d2qy9a2 | 211 | GTPase domain of the signal recognition particle r | 97.22 | |
| d3adka_ | 194 | Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | 97.16 | |
| d1nksa_ | 194 | Adenylate kinase {Archaeon Sulfolobus acidocaldari | 97.15 | |
| d1svia_ | 195 | Probable GTPase EngB {Bacillus subtilis [TaxId: 14 | 97.15 | |
| d1t9ha2 | 231 | Probable GTPase EngC (YjeQ), C-terminal domain {Ba | 97.08 | |
| d1gkya_ | 186 | Guanylate kinase {Baker's yeast (Saccharomyces cer | 97.08 | |
| d1viaa_ | 161 | Shikimate kinase (AroK) {Campylobacter jejuni [Tax | 97.05 | |
| d1kgda_ | 178 | Guanylate kinase-like domain of Cask {Human (Homo | 97.05 | |
| d1ak2a1 | 190 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 97.03 | |
| d1lvga_ | 190 | Guanylate kinase {Mouse (Mus musculus) [TaxId: 100 | 97.03 | |
| d1teva_ | 194 | UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606] | 97.02 | |
| d1yj5a2 | 172 | 5' polynucleotide kinase-3' phosphatase, C-termina | 97.02 | |
| d1gvnb_ | 273 | Plasmid maintenance system epsilon/zeta, toxin zet | 97.01 | |
| d1ls1a2 | 207 | GTPase domain of the signal sequence recognition p | 97.01 | |
| d1ckea_ | 225 | CMP kinase {Escherichia coli [TaxId: 562]} | 96.97 | |
| d1bifa1 | 213 | 6-phosphofructo-2-kinase/fructose-2,6-bisphosphata | 96.97 | |
| d1e6ca_ | 170 | Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax | 96.96 | |
| d1j8yf2 | 211 | GTPase domain of the signal sequence recognition p | 96.91 | |
| d2iyva1 | 165 | Shikimate kinase (AroK) {Mycobacterium tuberculosi | 96.91 | |
| d1zina1 | 182 | Adenylate kinase {Bacillus stearothermophilus [Tax | 96.9 | |
| d1zaka1 | 189 | Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | 96.9 | |
| d1q3ta_ | 223 | CMP kinase {Streptococcus pneumoniae [TaxId: 1313] | 96.87 | |
| d2p67a1 | 327 | LAO/AO transport system kinase ArgK {Escherichia c | 96.87 | |
| d1egaa1 | 179 | GTPase Era, N-terminal domain {Escherichia coli [T | 96.86 | |
| d1n0wa_ | 242 | DNA repair protein Rad51, catalytic domain {Human | 96.86 | |
| d1mkya1 | 171 | Probable GTPase Der, N-terminal and middle domains | 96.86 | |
| d2cxxa1 | 184 | GTP-binding protein engB {Pyrococcus horikoshii [T | 96.86 | |
| d2qtvb1 | 166 | SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta | 96.85 | |
| d1uf9a_ | 191 | Dephospho-CoA kinase {Thermus thermophilus [TaxId: | 96.84 | |
| d1s3ga1 | 182 | Adenylate kinase {Bacillus globisporus [TaxId: 145 | 96.84 | |
| d2gj8a1 | 161 | Probable tRNA modification GTPase TrmE (MnmE), G d | 96.83 | |
| d1mkya2 | 186 | Probable GTPase Der, N-terminal and middle domains | 96.83 | |
| d1r8sa_ | 160 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 96.82 | |
| d1nrjb_ | 209 | Signal recognition particle receptor beta-subunit | 96.82 | |
| d1upta_ | 169 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 96.8 | |
| d1wf3a1 | 178 | GTPase Era, N-terminal domain {Thermus thermophilu | 96.8 | |
| d2vp4a1 | 197 | Deoxyribonucleoside kinase {Fruit fly (Drosophila | 96.79 | |
| d1lnza2 | 185 | Obg GTP-binding protein middle domain {Bacillus su | 96.79 | |
| d1m7ga_ | 208 | Adenosine-5'phosphosulfate kinase (APS kinase) {Fu | 96.77 | |
| d4tmka_ | 210 | Thymidylate kinase {Escherichia coli [TaxId: 562]} | 96.75 | |
| d1wb9a2 | 234 | DNA repair protein MutS, the C-terminal domain {Es | 96.74 | |
| d2cdna1 | 181 | Adenylate kinase {Mycobacterium tuberculosis [TaxI | 96.73 | |
| d1nn5a_ | 209 | Thymidylate kinase {Human (Homo sapiens) [TaxId: 9 | 96.73 | |
| d1e4va1 | 179 | Adenylate kinase {Escherichia coli [TaxId: 562]} | 96.66 | |
| d1ewqa2 | 224 | DNA repair protein MutS, the C-terminal domain {Th | 96.61 | |
| d1udxa2 | 180 | Obg GTP-binding protein middle domain {Thermus the | 96.6 | |
| d2ak3a1 | 189 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 96.58 | |
| d1f6ba_ | 186 | SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: | 96.57 | |
| d1akya1 | 180 | Adenylate kinase {Baker's yeast (Saccharomyces cer | 96.55 | |
| d1jjva_ | 205 | Dephospho-CoA kinase {Haemophilus influenzae [TaxI | 96.46 | |
| d2qm8a1 | 323 | Metallochaperone MeaB {Methylobacterium extorquens | 96.45 | |
| d1tmka_ | 214 | Thymidylate kinase {Baker's yeast (Saccharomyces c | 96.45 | |
| d2fh5b1 | 207 | Signal recognition particle receptor beta-subunit | 96.43 | |
| d1ksha_ | 165 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 96.43 | |
| d1p5zb_ | 241 | Deoxycytidine kinase {Human (Homo sapiens) [TaxId: | 96.41 | |
| d1iqpa2 | 231 | Replication factor C {Archaeon Pyrococcus furiosus | 96.4 | |
| d1sxja2 | 253 | Replication factor C1 {Baker's yeast (Saccharomyce | 96.38 | |
| d1vhta_ | 208 | Dephospho-CoA kinase {Escherichia coli [TaxId: 562 | 96.37 | |
| d1zd9a1 | 164 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 96.33 | |
| d1xzpa2 | 160 | TrmE GTPase domain {Thermotoga maritima [TaxId: 23 | 96.33 | |
| d1in4a2 | 238 | Holliday junction helicase RuvB {Thermotoga mariti | 96.32 | |
| d1puia_ | 188 | Probable GTPase EngB {Escherichia coli [TaxId: 562 | 96.31 | |
| d1g6oa_ | 323 | Hexameric traffic ATPase, HP0525 {Helicobacter pyl | 96.28 | |
| d1ofha_ | 309 | HslU {Haemophilus influenzae [TaxId: 727]} | 96.26 | |
| d1zj6a1 | 177 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 96.25 | |
| d1ixsb2 | 239 | Holliday junction helicase RuvB {Thermus thermophi | 96.23 | |
| d1szpa2 | 251 | DNA repair protein Rad51, catalytic domain {Baker' | 96.23 | |
| d1htwa_ | 158 | Hypothetical protein HI0065 {Haemophilus influenza | 96.21 | |
| d1wb1a4 | 179 | Elongation factor SelB, N-terminal domain {Methano | 96.2 | |
| d1gsia_ | 208 | Thymidylate kinase {Mycobacterium tuberculosis [Ta | 96.18 | |
| d1sxjd2 | 237 | Replication factor C2 {Baker's yeast (Saccharomyce | 96.15 | |
| d1h65a_ | 257 | Chloroplast protein translocon GTPase Toc34 {Garde | 96.14 | |
| d1ky3a_ | 175 | Rab-related protein ypt7p {Baker's yeast (Saccharo | 96.13 | |
| d1v5wa_ | 258 | Meiotic recombination protein DMC1/LIM15 homolog { | 96.11 | |
| d1cr2a_ | 277 | Gene 4 protein (g4p, DNA primase), helicase domain | 96.09 | |
| d3raba_ | 169 | Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | 96.07 | |
| d1g7sa4 | 227 | Initiation factor IF2/eIF5b, N-terminal (G) domain | 96.04 | |
| d2f9la1 | 175 | Rab11b {Human (Homo sapiens) [TaxId: 9606]} | 96.01 | |
| d1pzna2 | 254 | DNA repair protein Rad51, catalytic domain {Archae | 96.0 | |
| d1ctqa_ | 166 | cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9 | 95.99 | |
| d1lv7a_ | 256 | AAA domain of cell division protein FtsH {Escheric | 95.99 | |
| d2fnaa2 | 283 | Archaeal ATPase SSO1545 {Sulfolobus solfataricus [ | 95.99 | |
| d1fnna2 | 276 | CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T | 95.98 | |
| d1z2aa1 | 164 | Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | 95.93 | |
| d1tf7a1 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 95.92 | |
| d2i1qa2 | 258 | DNA repair protein Rad51, catalytic domain {Archae | 95.92 | |
| d1tf7a2 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 95.88 | |
| d1d2na_ | 246 | Hexamerization domain of N-ethylmalemide-sensitive | 95.85 | |
| d1g16a_ | 166 | Rab-related protein Sec4 {Baker's yeast (Saccharom | 95.79 | |
| d2a5ja1 | 173 | Rab2b {Human (Homo sapiens) [TaxId: 9606]} | 95.77 | |
| d1sxjb2 | 224 | Replication factor C4 {Baker's yeast (Saccharomyce | 95.76 | |
| d1fzqa_ | 176 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 95.74 | |
| d1xtqa1 | 167 | GTP-binding protein RheB {Human (Homo sapiens) [Ta | 95.74 | |
| d1r7ra3 | 265 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 95.72 | |
| d2erya1 | 171 | r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 95.71 | |
| d1zcba2 | 200 | Transducin (alpha subunit) {Mouse (Mus musculus) [ | 95.68 | |
| d2ew1a1 | 171 | Rab30 {Human (Homo sapiens) [TaxId: 9606]} | 95.66 | |
| d1kaoa_ | 167 | Rap2a {Human (Homo sapiens) [TaxId: 9606]} | 95.65 | |
| d2f7sa1 | 186 | Rab27b {Human (Homo sapiens) [TaxId: 9606]} | 95.63 | |
| d1vg8a_ | 184 | Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | 95.62 | |
| d1z0fa1 | 166 | Rab14 {Human (Homo sapiens) [TaxId: 9606]} | 95.62 | |
| d2erxa1 | 171 | di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 95.6 | |
| d1z0ja1 | 167 | Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | 95.59 | |
| d1xpua3 | 289 | Transcription termination factor Rho, ATPase domai | 95.58 | |
| d1z06a1 | 165 | Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | 95.57 | |
| d1ixza_ | 247 | AAA domain of cell division protein FtsH {Thermus | 95.57 | |
| d1yzqa1 | 164 | Rab6 {Human (Homo sapiens) [TaxId: 9606]} | 95.56 | |
| d1tq4a_ | 400 | Interferon-inducible GTPase {Mouse (Mus musculus) | 95.54 | |
| d1nlfa_ | 274 | Hexameric replicative helicase repA {Escherichia c | 95.54 | |
| d1w5sa2 | 287 | CDC6-like protein APE0152, N-terminal domain {Aero | 95.52 | |
| d2gjsa1 | 168 | Rad {Human (Homo sapiens) [TaxId: 9606]} | 95.5 | |
| d1z08a1 | 167 | Rab21 {Human (Homo sapiens) [TaxId: 9606]} | 95.5 | |
| d2bcgy1 | 194 | GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi | 95.49 | |
| d1x3sa1 | 177 | Rab18 {Human (Homo sapiens) [TaxId: 9606]} | 95.48 | |
| d1wmsa_ | 174 | Rab9a {Human (Homo sapiens) [TaxId: 9606]} | 95.47 | |
| d1kmqa_ | 177 | RhoA {Human (Homo sapiens) [TaxId: 9606]} | 95.45 | |
| d1sxjc2 | 227 | Replication factor C3 {Baker's yeast (Saccharomyce | 95.45 | |
| d1sxje2 | 252 | Replication factor C5 {Baker's yeast (Saccharomyce | 95.4 | |
| d2bmea1 | 174 | Rab4a {Human (Homo sapiens) [TaxId: 9606]} | 95.35 | |
| d1e32a2 | 258 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 95.35 | |
| d1p9ra_ | 401 | Extracellular secretion NTPase EpsE {Vibrio choler | 95.32 | |
| d2fn4a1 | 173 | r-Ras {Human (Homo sapiens) [TaxId: 9606]} | 95.28 | |
| d1ek0a_ | 170 | Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T | 95.28 | |
| d1moza_ | 182 | ADP-ribosylation factor {Baker's yeast (Saccharomy | 95.28 | |
| d2atva1 | 168 | Ras-like estrogen-regulated growth inhibitor, RERG | 95.27 | |
| d1deka_ | 241 | Deoxynucleoside monophosphate kinase {Bacteriophag | 95.27 | |
| d1r2qa_ | 170 | Rab5a {Human (Homo sapiens) [TaxId: 9606]} | 95.26 | |
| d1svsa1 | 195 | Transducin (alpha subunit) {Rat (Rattus norvegicus | 95.23 | |
| d1svma_ | 362 | Papillomavirus large T antigen helicase domain {Si | 95.21 | |
| d1mh1a_ | 183 | Rac {Human (Homo sapiens) [TaxId: 9606]} | 95.18 | |
| d2g3ya1 | 172 | GTP-binding protein GEM {Human (Homo sapiens) [Tax | 95.16 | |
| d1w1wa_ | 427 | Smc head domain {Baker's yeast (Saccharomyces cere | 95.15 | |
| d1azta2 | 221 | Transducin (alpha subunit) {Cow (Bos taurus) [TaxI | 95.14 | |
| d1x1ra1 | 169 | Ras-related protein M-Ras (XRas) {Mouse (Mus muscu | 95.14 | |
| d2g6ba1 | 170 | Rab26 {Human (Homo sapiens) [TaxId: 9606]} | 95.12 | |
| d1g8pa_ | 333 | ATPase subunit of magnesium chelatase, BchI {Rhodo | 95.09 | |
| d1g41a_ | 443 | HslU {Haemophilus influenzae [TaxId: 727]} | 95.06 | |
| d1kkma_ | 176 | HPr kinase HprK C-terminal domain {Lactobacillus c | 95.04 | |
| d1knxa2 | 177 | HPr kinase HprK C-terminal domain {Mycoplasma pneu | 94.99 | |
| d2bmja1 | 175 | Centaurin gamma 1, G domain {Human (Homo sapiens) | 94.98 | |
| d2fu5c1 | 173 | Rab8a {Mouse (Mus musculus) [TaxId: 10090]} | 94.95 | |
| d1u8za_ | 168 | Ras-related protein RalA {Cotton-top tamarin (Sagu | 94.91 | |
| d2ocpa1 | 241 | Deoxyguanosine kinase {Human (Homo sapiens) [TaxId | 94.87 | |
| d1e0sa_ | 173 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 94.85 | |
| d1c1ya_ | 167 | Rap1A {Human (Homo sapiens) [TaxId: 9606]} | 94.82 | |
| d1f5na2 | 277 | Interferon-induced guanylate-binding protein 1 (GB | 94.8 | |
| d2atxa1 | 185 | RhoQ {Human (Homo sapiens) [TaxId: 9606]} | 94.75 | |
| d1i2ma_ | 170 | Ran {Human (Homo sapiens) [TaxId: 9606]} | 94.75 | |
| d1r6bx3 | 315 | ClpA, an Hsp100 chaperone, AAA+ modules {Escherich | 94.71 | |
| d1u94a1 | 263 | RecA protein, ATPase-domain {Escherichia coli [Tax | 94.64 | |
| d1kk1a3 | 195 | Initiation factor eIF2 gamma subunit, N-terminal ( | 94.62 | |
| d2ngra_ | 191 | CDC42 {Human (Homo sapiens) [TaxId: 9606]} | 94.59 | |
| d1m7ba_ | 179 | RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} | 94.54 | |
| d1ni3a1 | 296 | YchF GTP-binding protein N-terminal domain {Fissio | 94.51 | |
| d2bcjq2 | 200 | Transducin (alpha subunit) {Mouse (Mus musculus) [ | 94.46 | |
| d1ko7a2 | 169 | HPr kinase HprK C-terminal domain {Staphylococcus | 94.46 | |
| d1mo6a1 | 269 | RecA protein, ATPase-domain {Mycobacterium tubercu | 94.42 | |
| d1wxqa1 | 319 | GTP-binding protein PH0525 {Pyrococcus horikoshii | 94.36 | |
| d2c78a3 | 204 | Elongation factor Tu (EF-Tu), N-terminal (G) domai | 94.32 | |
| d1jala1 | 278 | YchF GTP-binding protein N-terminal domain {Haemop | 94.16 | |
| d2a5yb3 | 277 | CED-4, NB-ARC domain {Caenorhabditis elegans [TaxI | 94.15 | |
| d2jdid3 | 276 | Central domain of beta subunit of F1 ATP synthase | 94.09 | |
| d1xp8a1 | 268 | RecA protein, ATPase-domain {Deinococcus radiodura | 94.04 | |
| d2dy1a2 | 267 | Elongation factor G (EF-G), N-terminal (G) domain | 94.03 | |
| d1a5ta2 | 207 | delta prime subunit of DNA polymerase III, N-domai | 93.74 | |
| d2bv3a2 | 276 | Elongation factor G (EF-G), N-terminal (G) domain | 93.68 | |
| d1nija1 | 222 | Hypothetical protein YjiA, N-terminal domain {Esch | 93.62 | |
| d1jwyb_ | 306 | Dynamin G domain {Dictyostelium discoideum [TaxId: | 93.56 | |
| d1njfa_ | 239 | delta prime subunit of DNA polymerase III, N-domai | 93.37 | |
| d1d2ea3 | 196 | Elongation factor Tu (EF-Tu), N-terminal (G) domai | 93.3 | |
| d2akab1 | 299 | Dynamin G domain {Rat (Rattus norvegicus) [TaxId: | 93.29 | |
| d1w44a_ | 321 | NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]} | 92.81 | |
| d1qvra3 | 315 | ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2 | 92.63 | |
| d1l8qa2 | 213 | Chromosomal replication initiation factor DnaA {Aq | 92.33 | |
| d2qn6a3 | 205 | Initiation factor eIF2 gamma subunit, N-terminal ( | 92.3 | |
| d1p6xa_ | 333 | Thymidine kinase {Equine herpesvirus type 4 [TaxId | 92.29 | |
| d1jbka_ | 195 | ClpB, AAA+ modules {Escherichia coli [TaxId: 562]} | 92.23 | |
| d1r6bx2 | 268 | ClpA, an Hsp100 chaperone, AAA+ modules {Escherich | 92.06 | |
| d1e9ra_ | 433 | Bacterial conjugative coupling protein TrwB {Esche | 91.88 | |
| d1fx0a3 | 276 | Central domain of alpha subunit of F1 ATP synthase | 91.86 | |
| d1um8a_ | 364 | ClpX {Helicobacter pylori [TaxId: 210]} | 91.76 | |
| d1u0ja_ | 267 | Rep 40 protein helicase domain {Adeno-associated v | 91.32 | |
| d2jdia3 | 285 | Central domain of alpha subunit of F1 ATP synthase | 91.23 | |
| d1jnya3 | 224 | Elongation factor eEF-1alpha, N-terminal (G) domai | 91.2 | |
| d1uaaa1 | 306 | DEXX box DNA helicase {Escherichia coli, RepD [Tax | 90.67 | |
| d1yksa1 | 140 | YFV helicase domain {Yellow fever virus [TaxId: 11 | 90.62 | |
| d1osna_ | 331 | Thymidine kinase {Varicella-zoster virus [TaxId: 1 | 90.6 | |
| d1e2ka_ | 329 | Thymidine kinase {Herpes simplex virus type 1, dif | 90.58 | |
| d1g8fa3 | 122 | ATP sulfurylase C-terminal domain {Baker's yeast ( | 90.31 | |
| d1zunb3 | 222 | Sulfate adenylate transferase subunit cysN/C, EF-T | 90.09 | |
| d1tuea_ | 205 | Replication protein E1 helicase domain {Human papi | 90.05 | |
| d1w36d1 | 359 | Exodeoxyribonuclease V alpha chain (RecD) {Escheri | 89.89 | |
| d2olra1 | 313 | Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo | 89.55 | |
| d1pjra1 | 318 | DEXX box DNA helicase {Bacillus stearothermophilus | 89.3 | |
| d1j3ba1 | 318 | Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo | 88.97 | |
| d2gnoa2 | 198 | gamma subunit of DNA polymerase III, N-domain {The | 88.55 | |
| d1f60a3 | 239 | Elongation factor eEF-1alpha, N-terminal (G) domai | 88.52 | |
| d1lkxa_ | 684 | Myosin S1, motor domain {Dictyostelium discoideum, | 88.37 | |
| d1d0xa2 | 712 | Myosin S1, motor domain {Dictyostelium discoideum | 88.27 | |
| d1ii2a1 | 323 | Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo | 87.84 | |
| d1n0ua2 | 341 | Elongation factor 2 (eEF-2), N-terminal (G) domain | 87.65 | |
| d1br2a2 | 710 | Myosin S1, motor domain {Chicken (Gallus gallus), | 87.57 | |
| d1r5ba3 | 245 | Eukaryotic peptide chain release factor ERF2, G do | 87.39 | |
| d2bmfa2 | 305 | Dengue virus helicase {Dengue virus type 2 [TaxId: | 86.85 | |
| d1puja_ | 273 | Probable GTPase YlqF {Bacillus subtilis [TaxId: 14 | 86.75 | |
| d1qvra2 | 387 | ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2 | 86.52 | |
| d2mysa2 | 794 | Myosin S1, motor domain {Chicken (Gallus gallus), | 86.28 | |
| d1ny5a2 | 247 | Transcriptional activator sigm54 (NtrC1), C-termin | 86.19 | |
| d2b8ta1 | 139 | Thymidine kinase, TK1, N-terminal domain {Ureaplas | 85.85 | |
| d1kk8a2 | 789 | Myosin S1, motor domain {Bay scallop (Aequipecten | 85.59 | |
| d1a1va1 | 136 | HCV helicase domain {Human hepatitis C virus (HCV) | 85.45 | |
| d1w7ja2 | 730 | Myosin S1, motor domain {Chicken (Gallus gallus), | 85.16 | |
| d1gkub1 | 237 | Helicase-like "domain" of reverse gyrase {Archaeon | 82.4 | |
| d2p6ra3 | 202 | Hel308 helicase {Archaeoglobus fulgidus [TaxId: 22 | 81.69 | |
| d1xbta1 | 133 | Thymidine kinase, TK1, N-terminal domain {Human (H | 80.53 | |
| d1g3qa_ | 237 | Cell division regulator MinD {Archaeon Pyrococcus | 80.28 |
| >d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=3.7e-49 Score=347.84 Aligned_cols=198 Identities=15% Similarity=0.158 Sum_probs=142.3
Q ss_pred EEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCC------CCe
Q 021362 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP------PDV 151 (313)
Q Consensus 78 l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~------~~~ 151 (313)
|+++||+|+|++.. +|+||||+|++||++||+||||||||||+|+|+|+++ |++|+|.++|++. .+.
T Consensus 1 Iev~nv~k~yg~~~----~l~~isl~i~~Gei~~liGpsGsGKSTLl~~i~Gl~~---p~sG~I~i~g~~i~~~~~~~r~ 73 (232)
T d2awna2 1 VQLQNVTKAWGEVV----VSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLET---ITSGDLFIGEKRMNDTPPAERG 73 (232)
T ss_dssp EEEEEEEEEETTEE----EEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSC---CSEEEEEESSSCCTTSCGGGTC
T ss_pred CEEEEEEEEECCEE----EEeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCC---CCCCEEEECCEECCCCchhhce
Confidence 68999999999877 9999999999999999999999999999999999999 9999999999874 245
Q ss_pred EEEEecCCCCCCcccCCcccChHHHHHhcCCCCCccHHHHHHHHHHhh--cCCCccCCCCCCcCCCcchhhhhhccCceE
Q 021362 152 ATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLR--NQGSVYAPSFDHGVGDPVEDDILVGLQHKV 229 (313)
Q Consensus 152 i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~~~~~~~~~~~~l~~l~--~~~~~~~~~LSgG~kqRv~ia~al~~~ar~ 229 (313)
+|||||++..++ .+||+||+.++...++.+.++..+++.++++.++ ...++++.+|||||||||+||+|++.++++
T Consensus 74 ig~v~Q~~~l~~--~~tv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~l~~~~~~~~~~LSGGqkQRvaiAraL~~~P~i 151 (232)
T d2awna2 74 VGMVFQSYALYP--HLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSV 151 (232)
T ss_dssp EEEECSSCCC-----------------------CHHHHHHHHHHHHC---------------------CHHHHHHTCCSE
T ss_pred eeeecccccccc--chhHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCE
Confidence 999999965443 5999999999988888888888889999999998 455778889999999999999999999999
Q ss_pred EEEcCCccccCh----hhHHHHHhhccc----eEEEEcChHHHHH---HHh----hcccccCCchHHHHH
Q 021362 230 VIVDGNYLFLDG----GVWKDVSSMFDE----KWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAKW 284 (313)
Q Consensus 230 Li~d~~~lllDE----~~~~~l~~l~~~----~i~vtHd~~~~~~---rv~----griv~~G~~~ev~~~ 284 (313)
|++|+|+..||. ++++.|+++.++ .++||||++++.. |++ |++++.|+|+++...
T Consensus 152 lllDEPts~LD~~~~~~i~~~l~~l~~~~g~tii~vTHd~~~a~~~~dri~vm~~G~iv~~G~~~el~~~ 221 (232)
T d2awna2 152 FLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYHY 221 (232)
T ss_dssp EEEESTTTTSCHHHHHHHHHHHHHHHHHSCCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHS
T ss_pred EEEcCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEeCHHHHHhC
Confidence 999999999999 566777776443 4799999999998 666 999999999999753
|
| >d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Archaeon Thermococcus litoralis [TaxId: 2265]
Probab=100.00 E-value=2.1e-49 Score=351.03 Aligned_cols=201 Identities=13% Similarity=0.106 Sum_probs=178.2
Q ss_pred ccEEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCC------
Q 021362 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP------ 148 (313)
Q Consensus 75 m~~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~------ 148 (313)
|+.|+++||+|.||+.. +|+||||+|++||++||+||||||||||+|+|+|+++ |++|+|.++|++.
T Consensus 1 M~~i~v~nl~k~yg~~~----al~~vsl~i~~Ge~~~liG~sGaGKSTll~~i~gl~~---p~sG~I~~~g~~i~~~~~~ 73 (240)
T d1g2912 1 MAGVRLVDVWKVFGEVT----AVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEE---PSRGQIYIGDKLVADPEKG 73 (240)
T ss_dssp CEEEEEEEEEEEETTEE----EEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSC---CSEEEEEETTEEEEEGGGT
T ss_pred CCcEEEEeEEEEECCEE----EEcceeeEEcCCCEEEEECCCCChHHHHHHHHhcCCC---CCCCEEEECCEEecccchh
Confidence 67899999999999877 9999999999999999999999999999999999999 9999999999652
Q ss_pred ------CCeEEEEecCCCCCCcccCCcccChHHHHHhcCCCCCccHHHHHHHHHHhh--cCCCccCCCCCCcCCCcchhh
Q 021362 149 ------PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLR--NQGSVYAPSFDHGVGDPVEDD 220 (313)
Q Consensus 149 ------~~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~~~~~~~~~~~~l~~l~--~~~~~~~~~LSgG~kqRv~ia 220 (313)
.+.+|||||++..++ .+||+||+.++...++.+..+..+++.++++.++ ...++++.+|||||||||+||
T Consensus 74 ~~~~~~~r~ig~v~Q~~~L~~--~ltV~eni~~~~~~~~~~~~e~~~~v~~~l~~~~l~~~~~~~p~~LSGGqkQRv~IA 151 (240)
T d1g2912 74 IFVPPKDRDIAMVFQSYALYP--HMTVYDNIAFPLKLRKVPRQEIDQRVREVAELLGLTELLNRKPRELSGGQRQRVALG 151 (240)
T ss_dssp EECCGGGSSEEEECSCCCCCT--TSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTCGGGTTCCGGGSCHHHHHHHHHH
T ss_pred hhcccccccceecccchhhcc--hhhhhHhhhhhHHHcCCCHHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHH
Confidence 346999999975433 5999999999999888877777788999999998 455778889999999999999
Q ss_pred hhhccCceEEEEcCCccccCh----hhHHHHHhhccc----eEEEEcChHHHHH---HHh----hcccccCCchHHHHH
Q 021362 221 ILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFDE----KWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAKW 284 (313)
Q Consensus 221 ~al~~~ar~Li~d~~~lllDE----~~~~~l~~l~~~----~i~vtHd~~~~~~---rv~----griv~~G~~~ev~~~ 284 (313)
+|++.++++|++|+|+..||+ .+++.|+++.++ .|+||||++++.. |++ |++++.|+++|+...
T Consensus 152 raL~~~P~iLllDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vTHd~~~~~~~~drv~vm~~G~iv~~G~~~el~~~ 230 (240)
T d1g2912 152 RAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQVEAMTMGDRIAVMNRGVLQQVGSPDEVYDK 230 (240)
T ss_dssp HHHHTCCSEEEEECTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHS
T ss_pred HHHhcCCCEEEecCCCcccCHHHHHHHHHHHHHHHhccCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhC
Confidence 999999999999999999999 566666666443 4799999999988 666 999999999998653
|
| >d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Hypothetical protein PH0022, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Probab=100.00 E-value=2.9e-49 Score=349.73 Aligned_cols=200 Identities=14% Similarity=0.155 Sum_probs=172.5
Q ss_pred ccEEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCCC-----
Q 021362 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPP----- 149 (313)
Q Consensus 75 m~~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~~----- 149 (313)
|..|+++||+|+||+.. +|+||||+|++||++||+||||||||||+|+|+|+++ |++|+|.++|++..
T Consensus 4 M~~I~v~nlsk~yg~~~----al~~vsl~v~~Ge~~~liGpsGaGKSTLl~~i~Gl~~---p~sG~I~i~g~~i~~~~~~ 76 (239)
T d1v43a3 4 MVEVKLENLTKRFGNFT----AVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEE---PTEGRIYFGDRDVTYLPPK 76 (239)
T ss_dssp CCCEEEEEEEEEETTEE----EEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSC---CSEEEEEETTEECTTSCGG
T ss_pred cCeEEEEEEEEEECCEE----EEcceeEEECCCCEEEEECCCCChHHHHHHHHHcCCC---CCCCEEEEcceecccCCcc
Confidence 66799999999999887 9999999999999999999999999999999999999 99999999997632
Q ss_pred -CeEEEEecCCCCCCcccCCcccChHHHHHhcCCCCCccHHHHHHHHHHhh--cCCCccCCCCCCcCCCcchhhhhhccC
Q 021362 150 -DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLR--NQGSVYAPSFDHGVGDPVEDDILVGLQ 226 (313)
Q Consensus 150 -~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~~~~~~~~~~~~l~~l~--~~~~~~~~~LSgG~kqRv~ia~al~~~ 226 (313)
+.+||+||++..++ .+||+||+.++...++.+..+..+++.++|+.++ ...++++.+|||||||||+||+|++.+
T Consensus 77 ~r~ig~v~Q~~~l~~--~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSGGq~QRvaiAraL~~~ 154 (239)
T d1v43a3 77 DRNISMVFQSYAVWP--HMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEELLNRYPAQLSGGQRQRVAVARAIVVE 154 (239)
T ss_dssp GGTEEEEEC--------CCCHHHHHHTTCC--CCCHHHHHHHHHHHHHHTTCGGGTTSCTTTCCSSCHHHHHHHHHHTTC
T ss_pred cceEEEEeechhhcc--cchHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHhhhccC
Confidence 35999999965443 5999999999887777777777788999999998 456788889999999999999999999
Q ss_pred ceEEEEcCCccccCh----hhHHHHHhhccc----eEEEEcChHHHHH---HHh----hcccccCCchHHHH
Q 021362 227 HKVVIVDGNYLFLDG----GVWKDVSSMFDE----KWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAK 283 (313)
Q Consensus 227 ar~Li~d~~~lllDE----~~~~~l~~l~~~----~i~vtHd~~~~~~---rv~----griv~~G~~~ev~~ 283 (313)
+++|++|+|+..||+ .+++.|+++.++ .++||||++++.+ |++ |++++.|+++++..
T Consensus 155 P~iLllDEPts~LD~~~~~~i~~ll~~l~~~~g~tii~vTHd~~~a~~~~dri~vm~~G~iv~~G~~~el~~ 226 (239)
T d1v43a3 155 PDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQVEAMTMGDRIAVMNRGQLLQIGSPTEVYL 226 (239)
T ss_dssp CSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred CCceeecCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 999999999999999 667777776543 4799999999988 666 99999999999954
|
| >d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Glucose transport protein GlcV, N-terminal domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=100.00 E-value=9.1e-49 Score=346.83 Aligned_cols=203 Identities=14% Similarity=0.107 Sum_probs=175.8
Q ss_pred ccEEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCC------
Q 021362 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP------ 148 (313)
Q Consensus 75 m~~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~------ 148 (313)
|..|+++||+|.|+.. .+.+|+||||+|++||++||+||||||||||+++|+|+++ |++|+|+++|++.
T Consensus 1 M~~i~v~nlsk~y~~g--~~~aL~~vsl~i~~Ge~~~iiG~sGsGKSTll~~i~gl~~---p~~G~I~~~g~~i~~~~~~ 75 (242)
T d1oxxk2 1 MVRIIVKNVSKVFKKG--KVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDV---PSTGELYFDDRLVASNGKL 75 (242)
T ss_dssp CCCEEEEEEEEEEGGG--TEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSC---CSEEEEEETTEEEEETTEE
T ss_pred CCEEEEEeEEEEECCC--CEEEEeceEEEECCCCEEEEECCCCCcHHHHHHHHHcCcC---CCCceEEECCEEeecCchh
Confidence 5679999999999542 2339999999999999999999999999999999999999 9999999999652
Q ss_pred -----CCeEEEEecCCCCCCcccCCcccChHHHHHhcCCCCCccHHHHHHHHHHhh--cCCCccCCCCCCcCCCcchhhh
Q 021362 149 -----PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLR--NQGSVYAPSFDHGVGDPVEDDI 221 (313)
Q Consensus 149 -----~~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~~~~~~~~~~~~l~~l~--~~~~~~~~~LSgG~kqRv~ia~ 221 (313)
++.+|||||++..++ .+||+||+.+++..++.+..+..+++.++++.++ ...++++.+|||||||||+||+
T Consensus 76 ~~~~~rr~ig~vfQ~~~L~p--~ltv~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~p~~LSGGqkQRvaiAR 153 (242)
T d1oxxk2 76 IVPPEDRKIGMVFQTWALYP--NLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHHVLNHFPRELSGAQQQRVALAR 153 (242)
T ss_dssp SSCGGGSCEEEEETTSCCCT--TSCHHHHHHGGGTTSSCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHH
T ss_pred hcchhhccceEEeccccccc--cccHHHHhhhhhHhhcCCHHHHHHHHHHHHhhcChHhhhhCChhhCCHHHHhHHHHHh
Confidence 346999999964333 5999999999988888777777788999999998 4467788899999999999999
Q ss_pred hhccCceEEEEcCCccccCh----hhHHHHHhhccc----eEEEEcChHHHHH---HHh----hcccccCCchHHHHH
Q 021362 222 LVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFDE----KWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAKW 284 (313)
Q Consensus 222 al~~~ar~Li~d~~~lllDE----~~~~~l~~l~~~----~i~vtHd~~~~~~---rv~----griv~~G~~~ev~~~ 284 (313)
|++.+|++|++|+|+..||+ .+++.|+++.++ .++||||++++.. |++ |++++.|+|+++...
T Consensus 154 aL~~~P~llllDEPt~~LD~~~~~~i~~~i~~l~~~~g~tvi~vTHd~~~~~~~~dri~vm~~G~iv~~g~~~el~~~ 231 (242)
T d1oxxk2 154 ALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDPADIFAIADRVGVLVKGKLVQVGKPEDLYDN 231 (242)
T ss_dssp HHTTCCSEEEEESTTTTSCGGGHHHHHHHHHHHHHHHCCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHS
T ss_pred HHhhcccceeecCCccCCCHHHHHHHHHHHHHHHhccCCEEEEEECCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhC
Confidence 99999999999999999999 566666666443 4799999999988 666 999999999999653
|
| >d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Methionine import ATP-binding protein MetN species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=1e-48 Score=346.64 Aligned_cols=202 Identities=15% Similarity=0.139 Sum_probs=177.9
Q ss_pred EEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCCC-------
Q 021362 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPP------- 149 (313)
Q Consensus 77 ~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~~------- 149 (313)
||+++||+|.|+.....+.||+||||+|++||++||+||||||||||+++|+|+++ |++|+|.++|++..
T Consensus 1 mi~v~nlsk~y~~~~~~~~al~~vsl~i~~Ge~~~iiG~sGsGKSTLl~~i~Gl~~---p~sG~I~~~g~~i~~~~~~~~ 77 (240)
T d3dhwc1 1 MIKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLER---PTEGSVLVDGQELTTLSESEL 77 (240)
T ss_dssp CEEEEEEEEEEECSSCEEEEEEEEEEEECSSCEEEEEESTTSSHHHHHHHHTTSSC---CSEEEEEETTEEECTTCHHHH
T ss_pred CEEEEeEEEEeCCCCeeEEEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHcCCcc---ccCCceEEcCeEeeeCChhhh
Confidence 58999999999876545569999999999999999999999999999999999999 99999999997632
Q ss_pred ----CeEEEEecCCCCCCcccCCcccChHHHHHhcCCCCCccHHHHHHHHHHhh--cCCCccCCCCCCcCCCcchhhhhh
Q 021362 150 ----DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLR--NQGSVYAPSFDHGVGDPVEDDILV 223 (313)
Q Consensus 150 ----~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~~~~~~~~~~~~l~~l~--~~~~~~~~~LSgG~kqRv~ia~al 223 (313)
+.+|||||++. +++ .+||+||+.+++..++.+..+..+++.++|+.++ ...++++.+|||||||||+||+|+
T Consensus 78 ~~~rr~ig~VfQ~~~-l~~-~~tv~eni~~~l~~~~~~~~~~~~~v~~~L~~vgL~~~~~~~~~~LSGG~~QRvaiAraL 155 (240)
T d3dhwc1 78 TKARRQIGMIFQHFN-LLS-SRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKHDSYPSNLSGGQKQRVAIARAL 155 (240)
T ss_dssp HHHHHHEEECCSSCC-CCT-TSBHHHHHHHHHHTTTCCTTHHHHHHHHHHHHHSTTTTTSSCBSCCCHHHHHHHHHHHHH
T ss_pred hhhhccccccccccc-cCC-CccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHhhhh
Confidence 35999999964 333 5899999999998888888888889999999998 456778889999999999999999
Q ss_pred ccCceEEEEcCCccccCh----hhHHHHHhhccc----eEEEEcChHHHHH---HHh----hcccccCCchHHHH
Q 021362 224 GLQHKVVIVDGNYLFLDG----GVWKDVSSMFDE----KWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAK 283 (313)
Q Consensus 224 ~~~ar~Li~d~~~lllDE----~~~~~l~~l~~~----~i~vtHd~~~~~~---rv~----griv~~G~~~ev~~ 283 (313)
+.+|++|++|+|+..||+ .+++.|+++.++ .++||||++++.. |++ |++++.|+++++..
T Consensus 156 ~~~P~lLllDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vTHdl~~~~~~~dri~vl~~G~iv~~G~~~ei~~ 230 (240)
T d3dhwc1 156 ASNPKVLLCDEATSALDPATTRSILELLKDINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQDTVSEVFS 230 (240)
T ss_dssp HTCCSEEEEESGGGSSCHHHHHHHHHHHHHHHHHHCCEEEEEBSCHHHHHHHCSEEEEEETTEEEEEEETTTTTC
T ss_pred ccCCCeEEeccccccCCHHHhhHHHHHHHHHHhccCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 999999999999999999 667777776544 4799999999988 665 99999999999853
|
| >d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Sulfate/molybdate ABC transporter, ATP-binding protein species: Methanosarcina acetivorans [TaxId: 2214]
Probab=100.00 E-value=6e-47 Score=332.76 Aligned_cols=194 Identities=15% Similarity=0.180 Sum_probs=169.7
Q ss_pred EEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCCCC------
Q 021362 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPD------ 150 (313)
Q Consensus 77 ~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~~~------ 150 (313)
||+++||+|+|++ . +|+||||+|++||+++|+||||||||||+|+|+|+++ |++|+|.++|++..+
T Consensus 1 mi~v~nlsk~y~~-~----aL~~vs~~i~~Ge~~~liGpsGaGKSTll~~l~Gl~~---p~sG~I~~~G~~i~~~~~~~r 72 (229)
T d3d31a2 1 MIEIESLSRKWKN-F----SLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHV---PDSGRILLDGKDVTDLSPEKH 72 (229)
T ss_dssp CEEEEEEEEECSS-C----EEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSC---CSEEEEEETTEECTTSCHHHH
T ss_pred CEEEEEEEEEeCC-E----EEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhcCcC---CCCCEEEEccEeccccchhHh
Confidence 5899999999975 3 8999999999999999999999999999999999999 999999999987542
Q ss_pred eEEEEecCCCCCCcccCCcccChHHHHHhcCCCCCccHHHHHHHHHHhh--cCCCccCCCCCCcCCCcchhhhhhccCce
Q 021362 151 VATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLR--NQGSVYAPSFDHGVGDPVEDDILVGLQHK 228 (313)
Q Consensus 151 ~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~~~~~~~~~~~~l~~l~--~~~~~~~~~LSgG~kqRv~ia~al~~~ar 228 (313)
.+||+||++..++ ++||+||+.++...++.. ..+++.++++.++ ...++++.+|||||||||+||+|++.+|+
T Consensus 73 ~ig~v~Q~~~l~~--~~tV~enl~~~~~~~~~~---~~~~~~~~l~~~~l~~~~~~~~~~LSGG~~QRvaiAraL~~~P~ 147 (229)
T d3d31a2 73 DIAFVYQNYSLFP--HMNVKKNLEFGMRMKKIK---DPKRVLDTARDLKIEHLLDRNPLTLSGGEQQRVALARALVTNPK 147 (229)
T ss_dssp TCEEECTTCCCCT--TSCHHHHHHHHHHHHCCC---CHHHHHHHHHHTTCTTTTTSCGGGSCHHHHHHHHHHHHTTSCCS
T ss_pred cceeeccccccCc--cccHHHHHHHHHhhcccc---HHHHHHHHHHHhcchhhHhCChhhCCHHHhcchhhhhhhhccCC
Confidence 5999999965443 599999999998877654 3567889999988 44677888999999999999999999999
Q ss_pred EEEEcCCccccCh----hhHHHHHhhccc----eEEEEcChHHHHH---HHh----hcccccCCchHHHH
Q 021362 229 VVIVDGNYLFLDG----GVWKDVSSMFDE----KWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAK 283 (313)
Q Consensus 229 ~Li~d~~~lllDE----~~~~~l~~l~~~----~i~vtHd~~~~~~---rv~----griv~~G~~~ev~~ 283 (313)
+|++|+|+..||+ ++++.|+++.++ .++||||++++.. |++ |++++.|+++++..
T Consensus 148 iLllDEPts~LD~~~~~~i~~~l~~l~~~~g~tii~vtHd~~~~~~~~drv~vm~~G~iv~~g~~~el~~ 217 (229)
T d3d31a2 148 ILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLHITHDQTEARIMADRIAVVMDGKLIQVGKPEEIFE 217 (229)
T ss_dssp EEEEESSSTTSCHHHHHHHHHHHHHHHHHTTCEEEEEESCHHHHHHHCSEEEEESSSCEEEEECHHHHHS
T ss_pred ceeecCCCcCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 9999999999999 566666666432 4699999999998 666 99999999999864
|
| >d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ATP-binding subunit of the histidine permease species: Salmonella typhimurium [TaxId: 90371]
Probab=100.00 E-value=3.7e-46 Score=334.52 Aligned_cols=199 Identities=15% Similarity=0.132 Sum_probs=171.5
Q ss_pred EEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCCC-------
Q 021362 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPP------- 149 (313)
Q Consensus 77 ~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~~------- 149 (313)
.|+++||+|.||+.. +|+||||+|++||++||+||||||||||+++|+|+++ |++|+|+++|++..
T Consensus 2 ~Lev~nl~k~yg~~~----al~~vs~~i~~GEi~~iiG~sGsGKSTLl~~i~Gl~~---p~~G~I~~~G~~i~~~~~~~~ 74 (258)
T d1b0ua_ 2 KLHVIDLHKRYGGHE----VLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEK---PSEGAIIVNGQNINLVRDKDG 74 (258)
T ss_dssp CEEEEEEEEEETTEE----EEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSC---CSEEEEEETTEECCEEECTTS
T ss_pred eEEEEEEEEEECCEE----EEcceeeEEcCCCEEEEECCCCCcHHHHHHHHHcCcc---CCCCCEEECCEEeccCCccch
Confidence 599999999999877 9999999999999999999999999999999999999 99999999997642
Q ss_pred --------------CeEEEEecCCCCCCcccCCcccChHHHH-HhcCCCCCccHHHHHHHHHHhhcC---CCccCCCCCC
Q 021362 150 --------------DVATVLPMDGFHLYLSQLDAMEDPKEAH-ARRGAPWTFNPLLLLNCLKNLRNQ---GSVYAPSFDH 211 (313)
Q Consensus 150 --------------~~i~~v~qd~~~~~~~~ltv~e~~~~~~-~~~~~~~~~~~~~~~~~l~~l~~~---~~~~~~~LSg 211 (313)
+.+|||||++..++ .+||.||+.++. ...+.+..+..+++.++++.++.. .++++.+|||
T Consensus 75 ~~~~~~~~~~~~~r~~ig~vfQ~~~l~~--~~tv~env~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~p~~LSG 152 (258)
T d1b0ua_ 75 QLKVADKNQLRLLRTRLTMVFQHFNLWS--HMTVLENVMEAPIQVLGLSKHDARERALKYLAKVGIDERAQGKYPVHLSG 152 (258)
T ss_dssp SEEESCHHHHHHHHHHEEEECSSCCCCT--TSCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCCHHHHTSCGGGSCH
T ss_pred hcccccHhHHHHHhcceEEEEechhhcc--chhcchhhhhhHHHhcCCCHHHHHHHHHHHHHHcCCchhhhccCcccccH
Confidence 34999999965433 589999999864 445555556667888999999853 3556779999
Q ss_pred cCCCcchhhhhhccCceEEEEcCCccccCh----hhHHHHHhhccc---eEEEEcChHHHHH---HHh----hcccccCC
Q 021362 212 GVGDPVEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFDE---KWFIEVDLDTAMQ---RVL----KRHISTGK 277 (313)
Q Consensus 212 G~kqRv~ia~al~~~ar~Li~d~~~lllDE----~~~~~l~~l~~~---~i~vtHd~~~~~~---rv~----griv~~G~ 277 (313)
||+|||+||++++.++++|++|+|+..||. ++++.|+++.++ .++||||++++.. |++ |+++++|+
T Consensus 153 G~~QRv~iAraL~~~P~llilDEPT~gLD~~~~~~i~~ll~~l~~~g~til~vtHdl~~~~~~adri~vm~~G~iv~~g~ 232 (258)
T d1b0ua_ 153 GQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIEEEGD 232 (258)
T ss_dssp HHHHHHHHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEECSCHHHHHHHCSEEEEEETTEEEEEEC
T ss_pred HHHHHHHHHHHHhcCCCEEEeccccccCCHHHHHHHHHhhhhhcccCCceEEEeCCHHHHHHhCCEEEEEECCEEEEEcC
Confidence 999999999999999999999999999999 566666666554 4799999999988 766 99999999
Q ss_pred chHHHHH
Q 021362 278 PPDVAKW 284 (313)
Q Consensus 278 ~~ev~~~ 284 (313)
|+|+...
T Consensus 233 ~~ev~~~ 239 (258)
T d1b0ua_ 233 PEQVFGN 239 (258)
T ss_dssp HHHHHHS
T ss_pred HHHHHhC
Confidence 9999654
|
| >d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ0796 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=100.00 E-value=8.1e-46 Score=326.20 Aligned_cols=197 Identities=15% Similarity=0.151 Sum_probs=163.5
Q ss_pred EEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCCC-------
Q 021362 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPP------- 149 (313)
Q Consensus 77 ~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~~------- 149 (313)
||+++||+|.|+...+.+.+|+||||+|++||++||+||||||||||+++|+|+++ |++|+|+++|++..
T Consensus 1 mI~i~nlsk~y~~~~~~~~al~~isl~i~~Ge~~~iiG~sGsGKSTLl~~i~gl~~---p~sG~I~~~g~~i~~~~~~~~ 77 (230)
T d1l2ta_ 1 MIKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDK---PTEGEVYIDNIKTNDLDDDEL 77 (230)
T ss_dssp CEEEEEEEEEEEETTEEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSC---CSEEEEEETTEECTTCCHHHH
T ss_pred CEEEEeEEEEeCCCCeeEEEEeceEEEEcCCCEEEEECCCCCCcchhhHhccCCCC---CCcceeEECCEEcCcCChhhc
Confidence 58999999999876555668999999999999999999999999999999999999 99999999997643
Q ss_pred -----CeEEEEecCCCCCCcccCCcccChHHHHHhcCCCC---CccHHHHHHHHHHhhcC---CCccCCCCCCcCCCcch
Q 021362 150 -----DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPW---TFNPLLLLNCLKNLRNQ---GSVYAPSFDHGVGDPVE 218 (313)
Q Consensus 150 -----~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~~---~~~~~~~~~~l~~l~~~---~~~~~~~LSgG~kqRv~ 218 (313)
+.+|||||++..++ .+||+||+.++......+. .+..+++.++|+.++.. .+.++.+|||||||||+
T Consensus 78 ~~~r~~~ig~v~Q~~~l~~--~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~p~~LSGGqkQRva 155 (230)
T d1l2ta_ 78 TKIRRDKIGFVFQQFNLIP--LLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERFANHKPNQLSGGQQQRVA 155 (230)
T ss_dssp HHHHHHHEEEECTTCCCCT--TSCHHHHHHHHHHTCCSSCCCHHHHHHHHHHHHHHTTCCGGGTTCCGGGSCHHHHHHHH
T ss_pred chhhcceEEEEecchhhCc--CccHHHHHhHHHHHhccCCCCHHHHHHHHHHHHHhhchhhhhhcCChhhCCHHHHHHHH
Confidence 24999999965444 5999999999887654333 23344567777777742 45677799999999999
Q ss_pred hhhhhccCceEEEEcCCccccCh----hhHHHHHhhccc----eEEEEcChHHHHH--HHh----hcccccCCc
Q 021362 219 DDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFDE----KWFIEVDLDTAMQ--RVL----KRHISTGKP 278 (313)
Q Consensus 219 ia~al~~~ar~Li~d~~~lllDE----~~~~~l~~l~~~----~i~vtHd~~~~~~--rv~----griv~~G~~ 278 (313)
||+|++.++++|++|+|+..||+ .+++.|.++.++ .|+||||++++.. |++ |+++++|++
T Consensus 156 IAraL~~~P~lLllDEPTs~LD~~~~~~i~~~l~~l~~~~g~tii~vTHd~~~a~~~drv~~m~~G~Iv~~g~~ 229 (230)
T d1l2ta_ 156 IARALANNPPIILADQPTGALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDINVARFGERIIYLKDGEVEREEKL 229 (230)
T ss_dssp HHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEEECSCHHHHTTSSEEEEEETTEEEEEEEC
T ss_pred HHhhhhcCCCEEEecCCccccCHHHHHHHHHHHHHHHHhhCCEEEEECCCHHHHHhCCEEEEEECCEEEEeccC
Confidence 99999999999999999999999 677777776543 4799999998743 655 898888764
|
| >d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Branched chain aminoacid ABC transporter species: Thermotoga maritima, TM1139 [TaxId: 2336]
Probab=100.00 E-value=1.1e-44 Score=321.97 Aligned_cols=198 Identities=17% Similarity=0.142 Sum_probs=166.0
Q ss_pred cEEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCCCC-----
Q 021362 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPD----- 150 (313)
Q Consensus 76 ~~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~~~----- 150 (313)
.+|+++||+|.||+.. +|+||||+|++||++||+||||||||||+|+|+|+++ |++|+|.++|++...
T Consensus 5 ~~Lev~~l~k~yg~~~----al~~vs~~i~~Gei~~liGpnGaGKSTl~~~i~Gl~~---p~~G~I~~~G~~i~~~~~~~ 77 (240)
T d1ji0a_ 5 IVLEVQSLHVYYGAIH----AIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVR---AQKGKIIFNGQDITNKPAHV 77 (240)
T ss_dssp EEEEEEEEEEEETTEE----EEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSC---CSEEEEEETTEECTTCCHHH
T ss_pred eEEEEeeEEEEECCEE----EEeeeeEEECCCCEEEEECCCCCcHHHHHHHHhCCCC---CCccEEEecccccccccHHH
Confidence 3899999999999887 9999999999999999999999999999999999999 999999999987432
Q ss_pred ----eEEEEecCCCCCCcccCCcccChHHHHHhcCCCCCccHHHHHHHHHH---hhcCCCccCCCCCCcCCCcchhhhhh
Q 021362 151 ----VATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKN---LRNQGSVYAPSFDHGVGDPVEDDILV 223 (313)
Q Consensus 151 ----~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~~~~~~~~~~~~l~~---l~~~~~~~~~~LSgG~kqRv~ia~al 223 (313)
.++|+||+...++ .+|++||+.+....+. ......+.+.++++. +....++++.+|||||||||+||+|+
T Consensus 78 ~~r~gi~~~~q~~~l~~--~ltv~en~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~LSGG~~Qrv~iAraL 154 (240)
T d1ji0a_ 78 INRMGIALVPEGRRIFP--ELTVYENLMMGAYNRK-DKEGIKRDLEWIFSLFPRLKERLKQLGGTLSGGEQQMLAIGRAL 154 (240)
T ss_dssp HHHTTEEEECSSCCCCT--TSBHHHHHHGGGTTCC-CSSHHHHHHHHHHHHCHHHHTTTTSBSSSSCHHHHHHHHHHHHH
T ss_pred HHHhcccccCcccccCC--cccHHHHHHHHHHhcC-CHHHHHHHHHHHHHHhhChHHHHhCchhhCCHHHHHHHHHHHHH
Confidence 2889999865443 5999999877654332 233333444555554 34667888889999999999999999
Q ss_pred ccCceEEEEcCCccccCh----hhHHHHHhhccc---eEEEEcChHHHHH---HHh----hcccccCCchHHHH
Q 021362 224 GLQHKVVIVDGNYLFLDG----GVWKDVSSMFDE---KWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAK 283 (313)
Q Consensus 224 ~~~ar~Li~d~~~lllDE----~~~~~l~~l~~~---~i~vtHd~~~~~~---rv~----griv~~G~~~ev~~ 283 (313)
+.+|++|++|+|+..||+ ++++.|+++.++ .+++|||++++.+ |++ |++++.|+++++..
T Consensus 155 ~~~P~lLllDEPt~gLD~~~~~~i~~~i~~l~~~g~til~~tH~l~~~~~~~drv~vl~~G~iv~~g~~~el~~ 228 (240)
T d1ji0a_ 155 MSRPKLLMMDEPSLGLAPILVSEVFEVIQKINQEGTTILLVEQNALGALKVAHYGYVLETGQIVLEGKASELLD 228 (240)
T ss_dssp TTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHCSEEEEEETTEEEEEEEHHHHHT
T ss_pred HhCCCEeeecCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHhc
Confidence 999999999999999999 677777777654 4699999999988 665 99999999999864
|
| >d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ1267 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=100.00 E-value=4.1e-45 Score=327.53 Aligned_cols=201 Identities=14% Similarity=0.134 Sum_probs=168.9
Q ss_pred ccEEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCCCC----
Q 021362 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPD---- 150 (313)
Q Consensus 75 m~~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~~~---- 150 (313)
|.+|+++||+|+|++.. +|+||||+|++||++||+||||||||||+|+|+|+++ |++|+|.++|++...
T Consensus 2 M~iL~v~nlsk~yg~~~----aL~~vs~~v~~Gei~~liG~nGaGKSTLl~~i~Gl~~---p~~G~I~~~g~~i~~~~~~ 74 (254)
T d1g6ha_ 2 MEILRTENIVKYFGEFK----ALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLK---ADEGRVYFENKDITNKEPA 74 (254)
T ss_dssp CEEEEEEEEEEEETTEE----EEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSC---CSEEEEEETTEECTTCCHH
T ss_pred cceEEEEEEEEEECCeE----EEcceEEEECCCCEEEEECCCCCcHHHHHHHHHCCCc---CCCcEEEECCEeccchhHH
Confidence 77999999999999887 9999999999999999999999999999999999999 999999999987432
Q ss_pred -----eEEEEecCCCCCCcccCCcccChHHHHHhc------------CCCC-CccHHHHHHHHHHhh--cCCCccCCCCC
Q 021362 151 -----VATVLPMDGFHLYLSQLDAMEDPKEAHARR------------GAPW-TFNPLLLLNCLKNLR--NQGSVYAPSFD 210 (313)
Q Consensus 151 -----~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~------------~~~~-~~~~~~~~~~l~~l~--~~~~~~~~~LS 210 (313)
.++|+||++..++ .+|++||+.++.... .... ....+++.++++.++ ...++++.+||
T Consensus 75 ~~~~~gi~~v~Q~~~~~~--~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS 152 (254)
T d1g6ha_ 75 ELYHYGIVRTFQTPQPLK--EMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLYDRKAGELS 152 (254)
T ss_dssp HHHHHTEEECCCCCGGGG--GSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCGGGTTSBGGGSC
T ss_pred HHHHhcCCccCCccccCC--CCeeeeeeeehhhhccccchhhhhhhcccccHHHHHHHHHHHHHhcCcchhccCchhhCC
Confidence 2899999976444 599999998753211 1111 223356777888877 44567888999
Q ss_pred CcCCCcchhhhhhccCceEEEEcCCccccCh----hhHHHHHhhccc---eEEEEcChHHHHH---HHh----hcccccC
Q 021362 211 HGVGDPVEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFDE---KWFIEVDLDTAMQ---RVL----KRHISTG 276 (313)
Q Consensus 211 gG~kqRv~ia~al~~~ar~Li~d~~~lllDE----~~~~~l~~l~~~---~i~vtHd~~~~~~---rv~----griv~~G 276 (313)
|||||||+||+|++.+|++|++|+|+..||. ++++.|+++.++ +++||||++++.. |++ |+++++|
T Consensus 153 gG~~Qrv~iAraL~~~P~llilDEPt~gLD~~~~~~i~~~i~~l~~~g~til~vsHdl~~~~~~~Drv~vm~~G~iv~~g 232 (254)
T d1g6ha_ 153 GGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRLDIVLNYIDHLYVMFNGQIIAEG 232 (254)
T ss_dssp HHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCSTTGGGCSEEEEEETTEEEEEE
T ss_pred cHHHHHHHHHHHHHhCcCchhhcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHHHHHHhCCEEEEEeCCEEEEEe
Confidence 9999999999999999999999999999999 667777776554 3699999999987 765 9999999
Q ss_pred CchHHHHH
Q 021362 277 KPPDVAKW 284 (313)
Q Consensus 277 ~~~ev~~~ 284 (313)
+++|+...
T Consensus 233 ~~~e~~~~ 240 (254)
T d1g6ha_ 233 RGEEEIKN 240 (254)
T ss_dssp ESHHHHHH
T ss_pred cHHHHhhc
Confidence 99998765
|
| >d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter TM0544 species: Thermotoga maritima [TaxId: 2336]
Probab=100.00 E-value=2.5e-44 Score=319.11 Aligned_cols=198 Identities=14% Similarity=0.089 Sum_probs=172.5
Q ss_pred EEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCCC-------C
Q 021362 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPP-------D 150 (313)
Q Consensus 78 l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~~-------~ 150 (313)
|+++||+|+|+++. +|+|+||+|++||++||+||||||||||+|+|+|+++ |++|+|.++|++.. +
T Consensus 3 I~v~nl~k~yg~~~----vl~~vs~~v~~Gei~glvG~nGaGKSTLl~~l~G~~~---p~~G~i~i~G~~i~~~~~~~~~ 75 (238)
T d1vpla_ 3 VVVKDLRKRIGKKE----ILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIK---PSSGIVTVFGKNVVEEPHEVRK 75 (238)
T ss_dssp EEEEEEEEEETTEE----EEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSC---CSEEEEEETTEETTTCHHHHHT
T ss_pred EEEEeEEEEECCEE----EEccceeEEcCCCEEEEECCCCCCHHHHHHHHhcCCC---CCCCEEEECcEecccChHHHHh
Confidence 88999999999988 9999999999999999999999999999999999999 99999999997642 4
Q ss_pred eEEEEecCCCCCCcccCCcccChHHHHHhcCCCCCccHHHHHHHHHHhh--cCCCccCCCCCCcCCCcchhhhhhccCce
Q 021362 151 VATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLR--NQGSVYAPSFDHGVGDPVEDDILVGLQHK 228 (313)
Q Consensus 151 ~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~~~~~~~~~~~~l~~l~--~~~~~~~~~LSgG~kqRv~ia~al~~~ar 228 (313)
.++|+||+...++ .+|+.||+.+....++.+..+..+.+.++++.++ ...+.++.+||||||||++||+|++.+++
T Consensus 76 ~i~~vpq~~~~~~--~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lSgG~~qrv~iA~al~~~p~ 153 (238)
T d1vpla_ 76 LISYLPEEAGAYR--NMQGIEYLRFVAGFYASSSSEIEEMVERATEIAGLGEKIKDRVSTYSKGMVRKLLIARALMVNPR 153 (238)
T ss_dssp TEEEECTTCCCCT--TSBHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCGGGGGSBGGGCCHHHHHHHHHHHHHTTCCS
T ss_pred hEeEeeeccccCC--CccHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCCCHHHHhhhhhhCCHHHHHHHHHHHHHhcCCC
Confidence 5999999965444 5999999999888777665555667778888777 34566788999999999999999999999
Q ss_pred EEEEcCCccccCh----hhHHHHHhhccc---eEEEEcChHHHHH---HHh----hcccccCCchHHHHH
Q 021362 229 VVIVDGNYLFLDG----GVWKDVSSMFDE---KWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAKW 284 (313)
Q Consensus 229 ~Li~d~~~lllDE----~~~~~l~~l~~~---~i~vtHd~~~~~~---rv~----griv~~G~~~ev~~~ 284 (313)
+|++|+|+..||. .+++.|+++.++ .+++|||++++.. |++ |++++.|+++++...
T Consensus 154 illLDEPt~gLD~~~~~~i~~~i~~~~~~g~tii~~tH~l~~~~~~~drv~vl~~G~iv~~g~~~el~~~ 223 (238)
T d1vpla_ 154 LAILDEPTSGLDVLNAREVRKILKQASQEGLTILVSSHNMLEVEFLCDRIALIHNGTIVETGTVEELKER 223 (238)
T ss_dssp EEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEEECCHHHHTTTCSEEEEEETTEEEEEEEHHHHHHH
T ss_pred EEEecCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhc
Confidence 9999999999999 566666666544 3699999999997 766 999999999999754
|
| >d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC) species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=100.00 E-value=6e-43 Score=308.73 Aligned_cols=192 Identities=14% Similarity=0.112 Sum_probs=162.4
Q ss_pred EEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCC------CC
Q 021362 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP------PD 150 (313)
Q Consensus 77 ~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~------~~ 150 (313)
.|++ ++.|.||+.. + ||||++. +|+++|+||||||||||+|+|+|+++ |++|+|.++|++. .+
T Consensus 2 ~l~v-~~~k~~g~~~----~--~vs~~~~-~e~~~liGpnGaGKSTll~~i~Gl~~---p~~G~I~~~G~~i~~~~~~~r 70 (240)
T d2onka1 2 FLKV-RAEKRLGNFR----L--NVDFEMG-RDYCVLLGPTGAGKSVFLELIAGIVK---PDRGEVRLNGADITPLPPERR 70 (240)
T ss_dssp CEEE-EEEEEETTEE----E--EEEEEEC-SSEEEEECCTTSSHHHHHHHHHTSSC---CSEEEEEETTEECTTSCTTTS
T ss_pred EEEE-EEEEEECCEE----E--EEEEEeC-CEEEEEECCCCChHHHHHHHHHcCCC---CCceEEEECCEECCcCCHHHc
Confidence 4778 6799998865 4 8999996 68999999999999999999999999 9999999999653 34
Q ss_pred eEEEEecCCCCCCcccCCcccChHHHHHhcCCCCCccHHHHHHHHHHhh--cCCCccCCCCCCcCCCcchhhhhhccCce
Q 021362 151 VATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLR--NQGSVYAPSFDHGVGDPVEDDILVGLQHK 228 (313)
Q Consensus 151 ~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~~~~~~~~~~~~l~~l~--~~~~~~~~~LSgG~kqRv~ia~al~~~ar 228 (313)
.+||+||++..++ .+||+||+.+++. +.+..+..+++.++++.++ ...++++.+|||||||||+||+|++.+|+
T Consensus 71 ~ig~v~Q~~~l~~--~ltV~enl~~~l~--~~~~~~~~~~v~~~l~~~gl~~~~~~~~~~LSGG~kQRvaiAral~~~P~ 146 (240)
T d2onka1 71 GIGFVPQDYALFP--HLSVYRNIAYGLR--NVERVERDRRVREMAEKLGIAHLLDRKPARLSGGERQRVALARALVIQPR 146 (240)
T ss_dssp CCBCCCSSCCCCT--TSCHHHHHHTTCT--TSCHHHHHHHHHHHHHTTTCTTTTTCCGGGSCHHHHHHHHHHHHHTTCCS
T ss_pred Cceeeccchhhcc--cchhhHhhhhhhc--ccCHHHHHHHHHHHHHhcCcHhhhhCChhhCCHHHHHHHHHHHHHhccCC
Confidence 6999999965443 5999999998643 3344445677899999998 45677888999999999999999999999
Q ss_pred EEEEcCCccccCh----hhHHHHHhhccc----eEEEEcChHHHHH---HHh----hcccccCCchHHHH
Q 021362 229 VVIVDGNYLFLDG----GVWKDVSSMFDE----KWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAK 283 (313)
Q Consensus 229 ~Li~d~~~lllDE----~~~~~l~~l~~~----~i~vtHd~~~~~~---rv~----griv~~G~~~ev~~ 283 (313)
+|++|+|+..||. .+++.|+++.++ .++||||++++.+ |++ |++++.|+++++..
T Consensus 147 illlDEPts~LD~~~~~~i~~~i~~l~~~~g~tvi~vtHd~~~~~~~adri~vm~~G~ii~~G~~~el~~ 216 (240)
T d2onka1 147 LLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDLIEAAMLADEVAVMLNGRIVEKGKLKELFS 216 (240)
T ss_dssp SBEEESTTSSCCHHHHHHHHHHHHHHHHHHTCCEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred ceEecCccccCCHHHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEEecHHHHhc
Confidence 9999999999998 667777666543 4799999999998 666 99999999999975
|
| >d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter LmrA, C-terminal domain species: Lactococcus lactis [TaxId: 1358]
Probab=100.00 E-value=3.1e-41 Score=299.89 Aligned_cols=194 Identities=17% Similarity=0.140 Sum_probs=157.3
Q ss_pred EEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCC--------C
Q 021362 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK--------P 148 (313)
Q Consensus 77 ~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~--------~ 148 (313)
||+++||+++|++.. .+|+||||+|++||++||+||||||||||+++|+|+++ |++|+|.++|++ .
T Consensus 1 mle~knvsf~Y~~~~---~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~---p~~G~I~i~g~~i~~~~~~~~ 74 (242)
T d1mv5a_ 1 MLSARHVDFAYDDSE---QILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQ---PTAGEITIDGQPIDNISLENW 74 (242)
T ss_dssp CEEEEEEEECSSSSS---CSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSC---CSBSCEEETTEESTTTSCSCC
T ss_pred CEEEEEEEEECCCCC---ceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHHhhC---CCCCEEEECCEEeccccHHHH
Confidence 599999999996532 29999999999999999999999999999999999999 999999999965 2
Q ss_pred CCeEEEEecCCCCCCcccCCcccChHHHHHhcCCCCCccHHHHHHHHHHhhcC---------CC----ccCCCCCCcCCC
Q 021362 149 PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ---------GS----VYAPSFDHGVGD 215 (313)
Q Consensus 149 ~~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~---------~~----~~~~~LSgG~kq 215 (313)
++.++||+|+++.+. .|++||+.+.. ......+.+.+.++..+.. .+ ....+|||||||
T Consensus 75 r~~i~~v~Q~~~lf~---~ti~eNi~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~LSGGqkQ 146 (242)
T d1mv5a_ 75 RSQIGFVSQDSAIMA---GTIRENLTYGL-----EGDYTDEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQ 146 (242)
T ss_dssp TTTCCEECCSSCCCC---EEHHHHTTSCT-----TSCSCHHHHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCHHHHH
T ss_pred HhheEEEccccccCC---cchhhheeccc-----ccccchhhHHHHHHHHHhhhhhccCcccccccccCCCCCCCHHHHH
Confidence 456999999976443 49999986532 2223344455555544311 11 123479999999
Q ss_pred cchhhhhhccCceEEEEcCCccccCh----hhHHHHHhhccc--eEEEEcChHHHHH--HHh----hcccccCCchHHHH
Q 021362 216 PVEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFDE--KWFIEVDLDTAMQ--RVL----KRHISTGKPPDVAK 283 (313)
Q Consensus 216 Rv~ia~al~~~ar~Li~d~~~lllDE----~~~~~l~~l~~~--~i~vtHd~~~~~~--rv~----griv~~G~~~ev~~ 283 (313)
|++||||++.++++|++|+|+.-||. .+++.|+++.+. .|+||||++.+.. |++ |++++.|+++|++.
T Consensus 147 Rv~iARal~~~p~ililDEpts~LD~~~~~~i~~~l~~l~~~~Tvi~itH~l~~~~~~D~i~vl~~G~iv~~G~~~eLl~ 226 (242)
T d1mv5a_ 147 RLAIARAFLRNPKILMLDEATASLDSESESMVQKALDSLMKGRTTLVIAHRLSTIVDADKIYFIEKGQITGSGKHNELVA 226 (242)
T ss_dssp HHHHHHHHHHCCSEEEEECCSCSSCSSSCCHHHHHHHHHHTTSEEEEECCSHHHHHHCSEEEEEETTEECCCSCHHHHHH
T ss_pred HHHHHHHHhcCCCEEEecCCccccCHHHHHHHHHHHHHHcCCCEEEEEECCHHHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 99999999999999999999999999 678888777543 5799999998877 666 99999999999986
Q ss_pred H
Q 021362 284 W 284 (313)
Q Consensus 284 ~ 284 (313)
.
T Consensus 227 ~ 227 (242)
T d1mv5a_ 227 T 227 (242)
T ss_dssp H
T ss_pred C
Confidence 4
|
| >d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Peptide transporter Tap1, C-terminal ABC domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=1.5e-40 Score=296.98 Aligned_cols=196 Identities=16% Similarity=0.102 Sum_probs=155.8
Q ss_pred EEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCCC-------
Q 021362 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPP------- 149 (313)
Q Consensus 77 ~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~~------- 149 (313)
.|+++||++.|++.. ...+|+||||+|++||++||+||||||||||+++|+|+++ |++|+|.++|++..
T Consensus 11 ~I~~~nvsf~Y~~~~-~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~li~gl~~---p~~G~I~i~g~~i~~~~~~~~ 86 (251)
T d1jj7a_ 11 LVQFQDVSFAYPNRP-DVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQ---PTGGQLLLDGKPLPQYEHRYL 86 (251)
T ss_dssp CEEEEEEEECCTTST-TCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSC---CSEEEEEETTEEGGGBCHHHH
T ss_pred eEEEEEEEEECCCCC-CCEeEeceEEEEcCCCEEEEECCCCCcHHHHHHHHhcccC---CCcCEEEECCEecchhhhHHH
Confidence 499999999997642 3448999999999999999999999999999999999999 99999999997642
Q ss_pred -CeEEEEecCCCCCCcccCCcccChHHHHHhcCCCCCccHHHH---------HHHHHHhhc----CCCccCCCCCCcCCC
Q 021362 150 -DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLL---------LNCLKNLRN----QGSVYAPSFDHGVGD 215 (313)
Q Consensus 150 -~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~~~~~~~~~---------~~~l~~l~~----~~~~~~~~LSgG~kq 215 (313)
+.++||+|+++.+. .|+++|+.++.. ........ .+.++.+.. ..+....+|||||||
T Consensus 87 r~~i~~v~Q~~~lf~---~tv~eni~~g~~-----~~~~~~~~~~~~~~~~~~~~i~~l~~g~~~~i~~~~~~LSGGqkQ 158 (251)
T d1jj7a_ 87 HRQVAAVGQEPQVFG---RSLQENIAYGLT-----QKPTMEEITAAAVKSGAHSFISGLPQGYDTEVDEAGSQLSGGQRQ 158 (251)
T ss_dssp HHHEEEECSSCCCCS---SBHHHHHHCSCS-----SCCCHHHHHHHHHHHTCHHHHHTSTTGGGCBCCSSCSSSCHHHHH
T ss_pred HHHhhhccccccccC---cchhhhhhhhhc-----ccchHHHHHHHHHHHHHHHHHHhccccchhhHhccCccCChhHce
Confidence 45999999976443 599999976421 11111121 122333321 223455689999999
Q ss_pred cchhhhhhccCceEEEEcCCccccCh----hhHHHHHhhccc----eEEEEcChHHHHH--HHh----hcccccCCchHH
Q 021362 216 PVEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFDE----KWFIEVDLDTAMQ--RVL----KRHISTGKPPDV 281 (313)
Q Consensus 216 Rv~ia~al~~~ar~Li~d~~~lllDE----~~~~~l~~l~~~----~i~vtHd~~~~~~--rv~----griv~~G~~~ev 281 (313)
|++||+|++.++++|++|+++.-||. .+++.|.++.++ .++||||++.+.. ||+ |+++++|+++|+
T Consensus 159 RvaiARal~~~p~ililDEpTs~LD~~~~~~i~~~l~~l~~~~~~Tvi~itH~l~~~~~aDrI~vl~~G~iv~~Gt~~eL 238 (251)
T d1jj7a_ 159 AVALARALIRKPCVLILDDATSALDANSQLQVEQLLYESPERYSRSVLLITQHLSLVEQADHILFLEGGAIREGGTHQQL 238 (251)
T ss_dssp HHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHTCGGGGGCEEEEECSCHHHHHTCSEEEEEETTEEEEEECHHHH
T ss_pred EEEEeeccccCCcEEEecCcCcccChhhHHHHHHHHHHHhhhcCCEEEEEeCCHHHHHhCCEEEEEECCEEEEECCHHHH
Confidence 99999999999999999999999999 556666666542 4799999998766 666 999999999999
Q ss_pred HHH
Q 021362 282 AKW 284 (313)
Q Consensus 282 ~~~ 284 (313)
++.
T Consensus 239 l~~ 241 (251)
T d1jj7a_ 239 MEK 241 (251)
T ss_dssp HHH
T ss_pred HhC
Confidence 765
|
| >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Haemolysin B ATP-binding protein species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=8.9e-41 Score=296.52 Aligned_cols=193 Identities=16% Similarity=0.172 Sum_probs=154.8
Q ss_pred EEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCCC--------
Q 021362 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPP-------- 149 (313)
Q Consensus 78 l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~~-------- 149 (313)
|+++||++.|+.. ...+|+||||+|++||++||+||||||||||+++|+|+++ |++|+|.++|++..
T Consensus 2 I~~~nvsf~Y~~~--~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLl~ll~gl~~---p~~G~I~i~g~~i~~~~~~~lr 76 (241)
T d2pmka1 2 ITFRNIRFRYKPD--SPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYI---PENGQVLIDGHDLALADPNWLR 76 (241)
T ss_dssp EEEEEEEEESSTT--SCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSC---CSEEEEEETTEETTTSCHHHHH
T ss_pred eEEEEEEEEeCCC--CcceEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCC---CCCCEEEECCEEecccchhhhh
Confidence 7899999999542 1238999999999999999999999999999999999999 99999999998753
Q ss_pred CeEEEEecCCCCCCcccCCcccChHHHHHhcCCCCCccHHHHHHHHHHhh---------cC----CCccCCCCCCcCCCc
Q 021362 150 DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLR---------NQ----GSVYAPSFDHGVGDP 216 (313)
Q Consensus 150 ~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~~~~~~~~~~~~l~~l~---------~~----~~~~~~~LSgG~kqR 216 (313)
+.++||+|+++.+ . .|++||+.+.. + ....+++.+.++..+ .. .......||||||||
T Consensus 77 ~~i~~v~Q~~~lf-~--~Ti~eNi~~~~-----~-~~~~~~~~~~~~~~~~~~~i~~~~~~~~t~i~~~g~~LSGGq~QR 147 (241)
T d2pmka1 77 RQVGVVLQDNVLL-N--RSIIDNISLAN-----P-GMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQR 147 (241)
T ss_dssp HHEEEECSSCCCT-T--SBHHHHHCTTS-----T-TCCHHHHHHHHHHHTCHHHHTTSTTGGGSBCSTTTTCCCHHHHHH
T ss_pred ceEEEEecccccC-C--ccccccccccC-----c-cccHHHHHHHHHHHhhHHHHHhhhcchhhhcCCCCCccCHHHHHH
Confidence 3599999997643 3 69999997642 1 122333433333322 11 223456999999999
Q ss_pred chhhhhhccCceEEEEcCCccccCh----hhHHHHHhhccc--eEEEEcChHHHHH--HHh----hcccccCCchHHHHH
Q 021362 217 VEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFDE--KWFIEVDLDTAMQ--RVL----KRHISTGKPPDVAKW 284 (313)
Q Consensus 217 v~ia~al~~~ar~Li~d~~~lllDE----~~~~~l~~l~~~--~i~vtHd~~~~~~--rv~----griv~~G~~~ev~~~ 284 (313)
++||||++.++++|++|+++.-||. .+++.|+++.+. .|+|||+++.+.. ||+ |++++.|++++++.+
T Consensus 148 valARal~~~p~ililDEpts~LD~~~~~~i~~~l~~l~~~~Tvi~itH~l~~~~~~D~i~vl~~G~Iv~~G~~~ell~~ 227 (241)
T d2pmka1 148 IAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSE 227 (241)
T ss_dssp HHHHHHHTTCCSEEEECCCCSCCCHHHHHHHHHHHHHHHTTSEEEEECSSGGGGTTSSEEEEEETTEEEEEECHHHHHHS
T ss_pred HhhhhhhhcccchhhhhCCccccCHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHhCCEEEEEECCEEEEECCHHHHHhC
Confidence 9999999999999999999999999 566677776543 5799999998765 666 999999999999764
|
| >d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter MsbA, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=100.00 E-value=1e-39 Score=291.96 Aligned_cols=194 Identities=13% Similarity=0.111 Sum_probs=156.4
Q ss_pred EEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCCCC-------
Q 021362 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPD------- 150 (313)
Q Consensus 78 l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~~~------- 150 (313)
|+++||+++|++.. ..+|+||||+|++||++||+||||||||||+++|+|+++ |++|+|.++|++...
T Consensus 14 I~~~nvsf~Y~~~~--~~~L~~isl~i~~Ge~iaivG~sGsGKSTLl~ll~gl~~---p~~G~I~i~g~~i~~~~~~~~r 88 (253)
T d3b60a1 14 LEFRNVTFTYPGRE--VPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYD---IDEGHILMDGHDLREYTLASLR 88 (253)
T ss_dssp EEEEEEEECSSSSS--CCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTC---CSEEEEEETTEETTTBCHHHHH
T ss_pred EEEEEEEEEeCCCC--CceeeceEEEEcCCCEEEEECCCCChHHHHHHHHhcccC---CCccEEEECCcccchhhhhhhh
Confidence 99999999997632 348999999999999999999999999999999999999 999999999987542
Q ss_pred -eEEEEecCCCCCCcccCCcccChHHHHHhcCCCCCccHHHHHHHHHHhh---------cC----CCccCCCCCCcCCCc
Q 021362 151 -VATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLR---------NQ----GSVYAPSFDHGVGDP 216 (313)
Q Consensus 151 -~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~~~~~~~~~~~~l~~l~---------~~----~~~~~~~LSgG~kqR 216 (313)
.++|++|+++.+. .|+.+|+.++ .+.....+++.++++..+ .+ ...+..+||||||||
T Consensus 89 ~~i~~v~Q~~~l~~---~ti~~n~~~~-----~~~~~~~~~i~~a~~~~~l~~~i~~l~~gl~t~~~~~~~~LSGGqkQR 160 (253)
T d3b60a1 89 NQVALVSQNVHLFN---DTVANNIAYA-----RTEEYSREQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQR 160 (253)
T ss_dssp HTEEEECSSCCCCS---SBHHHHHHTT-----TTSCCCHHHHHHHHHTTTCHHHHHHSTTGGGSBCCTTSCSSCHHHHHH
T ss_pred heEEEEeeccccCC---cchhhhhhhc-----CcccCCHHHHHHHHHHHhHHHHHHhccccchhhhcCCCCCcCHHHHHH
Confidence 4999999976544 5888887654 222334444544443322 11 223455899999999
Q ss_pred chhhhhhccCceEEEEcCCccccCh----hhHHHHHhhccc--eEEEEcChHHHHH--HHh----hcccccCCchHHHHH
Q 021362 217 VEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFDE--KWFIEVDLDTAMQ--RVL----KRHISTGKPPDVAKW 284 (313)
Q Consensus 217 v~ia~al~~~ar~Li~d~~~lllDE----~~~~~l~~l~~~--~i~vtHd~~~~~~--rv~----griv~~G~~~ev~~~ 284 (313)
++||||++.++++|++|+|+..||. .+++.|+++.+. .|+||||++.+.. ||+ |++++.|++++++..
T Consensus 161 vaiARal~~~p~ililDEpts~LD~~~~~~i~~~l~~l~~~~Tvi~itH~l~~~~~~D~v~vl~~G~Iv~~G~~~eLl~~ 240 (253)
T d3b60a1 161 IAIARALLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIEQADEIVVVEDGIIVERGTHSELLAQ 240 (253)
T ss_dssp HHHHHHHHHCCSEEEEETTTSSCCHHHHHHHHHHHHHHHTTSEEEEECSCGGGTTTCSEEEEEETTEEEEEECHHHHHHH
T ss_pred HHHHHHHhcCCCEEEeccccccCCHHHHHHHHHHHHHhccCCEEEEEECCHHHHHhCCEEEEEECCEEEEECCHHHHHhC
Confidence 9999999999999999999999999 566666666543 4799999998765 666 999999999999865
|
| >d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Probab=100.00 E-value=1.9e-39 Score=290.09 Aligned_cols=193 Identities=12% Similarity=0.089 Sum_probs=156.4
Q ss_pred EEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCCC--------
Q 021362 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPP-------- 149 (313)
Q Consensus 78 l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~~-------- 149 (313)
|+++||+++|++.. ..+|+||||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.+..
T Consensus 17 I~~~nvsf~Y~~~~--~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~---p~~G~I~i~g~~i~~~~~~~lr 91 (255)
T d2hyda1 17 IDIDHVSFQYNDNE--APILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYD---VTSGQILIDGHNIKDFLTGSLR 91 (255)
T ss_dssp EEEEEEEECSCSSS--CCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSC---CSEEEEEETTEEGGGSCHHHHH
T ss_pred EEEEEEEEEeCCCC--CcceeceEEEEcCCCEEEEECCCCCcHHHHHHHHHhcCC---ccccccccCCEEcccCCHHHhh
Confidence 99999999997632 238999999999999999999999999999999999999 99999999997642
Q ss_pred CeEEEEecCCCCCCcccCCcccChHHHHHhcCCCCCccHHHHHHHHHHhhc---------CCC----ccCCCCCCcCCCc
Q 021362 150 DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN---------QGS----VYAPSFDHGVGDP 216 (313)
Q Consensus 150 ~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~~~~~~~~~~~~l~~l~~---------~~~----~~~~~LSgG~kqR 216 (313)
+.++||+|+++.+. .|++||+.++. +. ...+++.++++..+. +.+ ....+||||||||
T Consensus 92 ~~i~~v~Q~~~lf~---~Ti~eNi~~g~-----~~-~~~~~~~~al~~~~l~~~i~~lp~gl~t~i~~~g~~LSgGq~QR 162 (255)
T d2hyda1 92 NQIGLVQQDNILFS---DTVKENILLGR-----PT-ATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQR 162 (255)
T ss_dssp HTEEEECSSCCCCS---SBHHHHHGGGC-----SS-CCHHHHHHHHHHTTCHHHHHTSTTGGGCBCCGGGTTSCHHHHHH
T ss_pred heeeeeeccccCCC---CCHHHHHhccC-----cC-CCHHHHHHHHHHhCCHHHHHhccccccchhcCCCCCcCHHHHHH
Confidence 45999999976443 69999997652 22 233455555554431 112 2344899999999
Q ss_pred chhhhhhccCceEEEEcCCccccCh----hhHHHHHhhccc--eEEEEcChHHHHH--HHh----hcccccCCchHHHHH
Q 021362 217 VEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFDE--KWFIEVDLDTAMQ--RVL----KRHISTGKPPDVAKW 284 (313)
Q Consensus 217 v~ia~al~~~ar~Li~d~~~lllDE----~~~~~l~~l~~~--~i~vtHd~~~~~~--rv~----griv~~G~~~ev~~~ 284 (313)
++||||++.++++|++|+++.-||. .+++.|.++... .|+|||+++.+.. |++ |++++.|+++|+++.
T Consensus 163 i~iARal~~~p~ililDEpts~LD~~t~~~i~~~l~~l~~~~TvI~itH~~~~~~~~D~ii~l~~G~iv~~G~~~eLl~~ 242 (255)
T d2hyda1 163 LSIARIFLNNPPILILDEATSALDLESESIIQEALDVLSKDRTTLIVAHRLSTITHADKIVVIENGHIVETGTHRELIAK 242 (255)
T ss_dssp HHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSSGGGTTTCSEEEEEETTEEEEEECHHHHHHT
T ss_pred HHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhCCEEEEEECCEEEEECCHHHHHhC
Confidence 9999999999999999999999999 556666666543 4799999998866 666 999999999999764
|
| >d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ABC transporter involved in vitamin B12 uptake, BtuD species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=2.5e-37 Score=273.02 Aligned_cols=188 Identities=19% Similarity=0.150 Sum_probs=151.7
Q ss_pred EEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCCCC------
Q 021362 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPD------ 150 (313)
Q Consensus 77 ~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~~~------ 150 (313)
+|+++|++++| +|++|||+|++||++||+||||||||||+++|+|+. |++|+|.++|++...
T Consensus 3 il~~~dv~~~~--------~l~~isl~I~~Gei~~iiG~nGaGKSTLl~~l~Gl~----~~~G~I~~~g~~i~~~~~~~~ 70 (231)
T d1l7vc_ 3 VMQLQDVAEST--------RLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMT----SGKGSIQFAGQPLEAWSATKL 70 (231)
T ss_dssp EEEEEEECCTT--------TSCSEEEEEETTCEEECBCCTTSSHHHHHHHHHTSC----CCSSEEEESSSBGGGSCHHHH
T ss_pred EEEEECcccCc--------eecCEEEEEcCCCEEEEECCCCCcHHHHHHHHhCCC----CCceEEEECCEECCcCCHHHH
Confidence 79999998664 799999999999999999999999999999999975 889999999987322
Q ss_pred --eEEEEecCCCCCCcccCCcccChHHHHHhcCCCCCccHHHHHHHHHHhh--cCCCccCCCCCCcCCCcchhhhhhcc-
Q 021362 151 --VATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLR--NQGSVYAPSFDHGVGDPVEDDILVGL- 225 (313)
Q Consensus 151 --~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~~~~~~~~~~~~l~~l~--~~~~~~~~~LSgG~kqRv~ia~al~~- 225 (313)
..+|++|+....+ ..++++++.+. .......+.+.++++.++ ...++++.+|||||||||+||+++++
T Consensus 71 ~~~~~~~~~~~~~~~--~~~v~~~~~~~-----~~~~~~~~~~~~~~~~~~l~~~~~~~~~~LSgG~~Qrv~iA~al~~~ 143 (231)
T d1l7vc_ 71 ALHRAYLSQQQTPPF--ATPVWHYLTLH-----QHDKTRTELLNDVAGALALDDKLGRSTNQLSGGEWQRVRLAAVVLQI 143 (231)
T ss_dssp HHHEEEECSCCCCCS--SCBHHHHHHHH-----CSCTTCHHHHHHHHHHTTCTTTTTSBGGGCCHHHHHHHHHHHHHHHH
T ss_pred HhhceeeeccccCCc--cccHHHHhhhc-----cchhhHHHHHHHHHHhcCCHhHhCcChhhcCHHHHHHHHHHHHHHhh
Confidence 3788988854333 25666665543 223345667788888887 34566778999999999999999986
Q ss_pred ------CceEEEEcCCccccCh----hhHHHHHhhccc---eEEEEcChHHHHH---HHh----hcccccCCchHHHH
Q 021362 226 ------QHKVVIVDGNYLFLDG----GVWKDVSSMFDE---KWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAK 283 (313)
Q Consensus 226 ------~ar~Li~d~~~lllDE----~~~~~l~~l~~~---~i~vtHd~~~~~~---rv~----griv~~G~~~ev~~ 283 (313)
.+++|++|+|+..||. .+++.|+++.++ ++++|||++++.. |++ |++++.|+++|+..
T Consensus 144 ~p~~~p~p~llllDEPt~gLD~~~~~~i~~~i~~l~~~g~tii~vtHdl~~~~~~~dri~vl~~G~iv~~G~~~ev~~ 221 (231)
T d1l7vc_ 144 TPQANPAGQLLLLDEPMNSLDVAQQSALDKILSALCQQGLAIVMSSHDLNHTLRHAHRAWLLKGGKMLASGRREEVLT 221 (231)
T ss_dssp CTTTCTTCCEEEESSCSTTCCHHHHHHHHHHHHHHHHTTCEEEECCCCHHHHHHHCSBCCBEETTEECCCSBHHHHSC
T ss_pred CcccCCCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHCCEEEEEECCEEEEECCHHHHhC
Confidence 6699999999999999 556666665444 4699999999988 665 99999999999854
|
| >d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter PF0895 species: Pyrococcus furiosus [TaxId: 2261]
Probab=100.00 E-value=3.3e-37 Score=266.66 Aligned_cols=165 Identities=17% Similarity=0.226 Sum_probs=139.6
Q ss_pred EEEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCC---CCeEE
Q 021362 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP---PDVAT 153 (313)
Q Consensus 77 ~l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~---~~~i~ 153 (313)
.|+++||++.|+. . +|+|+||+|++||++||+||||||||||+++|+|+++ |++|+|.++|++. +..++
T Consensus 2 ~lev~~ls~~y~~-~----vl~~is~~i~~Gei~~l~G~NGsGKSTLl~~i~gl~~---p~~G~I~~~g~~i~~~~~~i~ 73 (200)
T d1sgwa_ 2 KLEIRDLSVGYDK-P----VLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLK---PLKGEIIYNGVPITKVKGKIF 73 (200)
T ss_dssp EEEEEEEEEESSS-E----EEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSC---CSEEEEEETTEEGGGGGGGEE
T ss_pred eEEEEEEEEEeCC-e----EEeceEEEEcCCCEEEEECCCCChHHHHHHHHhcccc---cCCCEEEECCEehhHhcCcEE
Confidence 5899999999963 4 8999999999999999999999999999999999999 9999999999764 34689
Q ss_pred EEecCCCCCCcccCCcccChHHHHHhcCCCCCccHHHHHHHHHHhhc-CCCccCCCCCCcCCCcchhhhhhccCceEEEE
Q 021362 154 VLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN-QGSVYAPSFDHGVGDPVEDDILVGLQHKVVIV 232 (313)
Q Consensus 154 ~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~~~~~~~~~~~~l~~l~~-~~~~~~~~LSgG~kqRv~ia~al~~~ar~Li~ 232 (313)
|++|+.... ..+++.+++.+....++.. ...+.+.+.++.++. ..+.++.+||||||||++||++++.+++++++
T Consensus 74 ~~~~~~~~~--~~~t~~~~l~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~~LSgG~~qrv~ia~al~~~~~llll 149 (200)
T d1sgwa_ 74 FLPEEIIVP--RKISVEDYLKAVASLYGVK--VNKNEIMDALESVEVLDLKKKLGELSQGTIRRVQLASTLLVNAEIYVL 149 (200)
T ss_dssp EECSSCCCC--TTSBHHHHHHHHHHHTTCC--CCHHHHHHHHHHTTCCCTTSBGGGSCHHHHHHHHHHHHTTSCCSEEEE
T ss_pred EEeecccCC--CCcCHHHHHHHHHHhcCCc--cCHHHHHHHHHHcCCcccccccCcCCCcHHHHHHHHHHHhcCCCEEEE
Confidence 999985433 3589999998887776643 345667778888873 34567779999999999999999999999999
Q ss_pred cCCccccCh----hhHHHHHhhccc
Q 021362 233 DGNYLFLDG----GVWKDVSSMFDE 253 (313)
Q Consensus 233 d~~~lllDE----~~~~~l~~l~~~ 253 (313)
|+|+..||+ .+++.|.++.++
T Consensus 150 DEPt~gLD~~~~~~i~~~l~~~~~~ 174 (200)
T d1sgwa_ 150 DDPVVAIDEDSKHKVLKSILEILKE 174 (200)
T ss_dssp ESTTTTSCTTTHHHHHHHHHHHHHH
T ss_pred cCcccccCHHHHHHHHHHHHHHHhC
Confidence 999999999 466667666543
|
| >d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=2.7e-35 Score=266.82 Aligned_cols=182 Identities=10% Similarity=0.104 Sum_probs=139.7
Q ss_pred EEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCCCCeEEEEec
Q 021362 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPM 157 (313)
Q Consensus 78 l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~~~~i~~v~q 157 (313)
|++++++ |++.. +|+||||+|++||++||+||||||||||+++|+|+++ |++|+|.++| +++|++|
T Consensus 39 i~~~~~~--~~g~p----vL~~isl~i~~Ge~vaivG~nGsGKSTLl~~i~Gl~~---p~~G~I~~~g-----~i~~v~Q 104 (281)
T d1r0wa_ 39 VSFSHLC--LVGNP----VLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELE---ASEGIIKHSG-----RVSFCSQ 104 (281)
T ss_dssp -CHHHHH--HTTCE----EEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSC---CSEEEEECCS-----CEEEECS
T ss_pred EEEEEcC--CCCCe----EEeCeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCc---CCCcEEEECC-----EEEEEec
Confidence 5555554 34445 9999999999999999999999999999999999999 9999999988 3899999
Q ss_pred CCCCCCcccCCcccChHHHHHhcCCCCCccHHHHHHHHHHhh---------cCC----CccCCCCCCcCCCcchhhhhhc
Q 021362 158 DGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLR---------NQG----SVYAPSFDHGVGDPVEDDILVG 224 (313)
Q Consensus 158 d~~~~~~~~ltv~e~~~~~~~~~~~~~~~~~~~~~~~l~~l~---------~~~----~~~~~~LSgG~kqRv~ia~al~ 224 (313)
++..++ .|++||+.++. ..+.....++++... ... .....+|||||||||+||+|++
T Consensus 105 ~~~l~~---~tv~eni~~~~-------~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~LSgGqkQRv~lARaL~ 174 (281)
T d1r0wa_ 105 FSWIMP---GTIKENIIFGV-------SYDEYRYKSVVKACQLQQDITKFAEQDNTVLGEGGVTLSGGQRARISLARAVY 174 (281)
T ss_dssp SCCCCS---EEHHHHHTTTS-------CCCHHHHHHHHHHTTCHHHHTTSTTGGGCEECTTCTTSCHHHHHHHHHHHHHH
T ss_pred cccccC---ceeeccccccc-------cccchHHHHHHHHHHhHHHHHhchhhhhhhhhhhccCCCHHHHHHHHHHHHHH
Confidence 976544 49999986642 112333334443322 111 1234479999999999999999
Q ss_pred cCceEEEEcCCccccChhhHHHHHh-hcc------ceEEEEcChHHHHH--HHh----hcccccCCchHHHH
Q 021362 225 LQHKVVIVDGNYLFLDGGVWKDVSS-MFD------EKWFIEVDLDTAMQ--RVL----KRHISTGKPPDVAK 283 (313)
Q Consensus 225 ~~ar~Li~d~~~lllDE~~~~~l~~-l~~------~~i~vtHd~~~~~~--rv~----griv~~G~~~ev~~ 283 (313)
.++++|++|+|+..||....+.+.+ +.. ..|+|||+++.+.. ||+ |++++.|+++|+..
T Consensus 175 ~~p~illLDEPts~LD~~~~~~i~~~~~~~~~~~~tvi~itH~~~~l~~aDrI~vl~~G~i~~~Gt~~eL~~ 246 (281)
T d1r0wa_ 175 KDADLYLLDSPFGYLDVFTEEQVFESCVCKLMANKTRILVTSKMEHLRKADKILILHQGSSYFYGTFSELQS 246 (281)
T ss_dssp SCCSEEEEESCCCSSCHHHHHHHHHHCCCCCTTTSEEEEECSCHHHHHTCSEEEEEETTEEEEEECHHHHHH
T ss_pred hCccchhhcCccccCCHHHHHHHHHHHHHHhhCCCEEEEEechHHHHHhCCEEEEEECCEEEEECCHHHHhc
Confidence 9999999999999999854444433 222 24799999988755 666 99999999999865
|
| >d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Pantothenate kinase PanK species: Escherichia coli [TaxId: 562]
Probab=99.64 E-value=8.1e-17 Score=146.04 Aligned_cols=189 Identities=19% Similarity=0.246 Sum_probs=137.3
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCCCCeEEEEecCCCCCCcccCCcccChHHHHHhcCCCCC
Q 021362 106 VKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWT 185 (313)
Q Consensus 106 ~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~~~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~~~ 185 (313)
..-++||.|++|||||||.+.|..++. -.. ....+.++++|+|+.++..+... + ....+|.|.+
T Consensus 79 ~P~iIGIaG~sgSGKSTla~~L~~lL~---~~~---------~~~~v~~Is~D~F~~~~~~l~~~-~---~~~~~g~Pes 142 (308)
T d1sq5a_ 79 IPYIISIAGSVAVGKSTTARVLQALLS---RWP---------EHRRVELITTDGFLHPNQVLKER-G---LMKKKGFPES 142 (308)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHHHHT---TST---------TCCCEEEEEGGGGBCCHHHHHHH-T---CTTCTTSGGG
T ss_pred CCEEEEEeCCCCCCCcHHHHHHHHHHh---hhc---------CCCceEEEeeeeeECCchHHHHh-c---CCccCCchHh
Confidence 346999999999999999999999985 110 12347889999987654221100 0 1124677888
Q ss_pred ccHHHHHHHHHHhhcC-CCccCCCCCCcCCCcchhhhhhccCceEEEEcCCccccChhhHH------HHHhhccceEEEE
Q 021362 186 FNPLLLLNCLKNLRNQ-GSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWK------DVSSMFDEKWFIE 258 (313)
Q Consensus 186 ~~~~~~~~~l~~l~~~-~~~~~~~LSgG~kqRv~ia~al~~~ar~Li~d~~~lllDE~~~~------~l~~l~~~~i~vt 258 (313)
.|.+.+.+.|..+..+ ....+|.||.-...++.-.......++++|+|+-+++.|+..+. .+.++++..|||+
T Consensus 143 ~D~~~L~~~L~~lk~g~~~v~~P~yd~~~~d~~~~~~~~~~~~dIlIvEGi~vL~~~~~~~~~~~~~~l~d~~D~~Ifvd 222 (308)
T d1sq5a_ 143 YDMHRLVKFVSDLKSGVPNVTAPVYSHLIYDVIPDGDKTVVQPDILILEGLNVLQSGMDYPHDPHHVFVSDFVDFSIYVD 222 (308)
T ss_dssp BCHHHHHHHHHHHTTTCSCEEECCEETTTTEECTTCCEEEC-CCEEEEECTTTTCCGGGCTTSCCSSCGGGGCSEEEEEE
T ss_pred hhHHHHHHHHHHHHcCCCcceeeccchhhcccCCCCceEeCCCCEEEEcchhhccCccccccccccchhhhhhheeeeec
Confidence 9999999999888744 45678888877766665555556678999999999999875333 3788899999999
Q ss_pred cChHHHHHHHhhcccc-c----------------CCch---HHHHHHHHhcCCchhH-HhhhcccCccEEeec
Q 021362 259 VDLDTAMQRVLKRHIS-T----------------GKPP---DVAKWRIEYNDRPNAE-LIMKSKKNADLVIKS 310 (313)
Q Consensus 259 Hd~~~~~~rv~griv~-~----------------G~~~---ev~~~~~~~~~~~~~~-~i~~~~~~ad~ii~~ 310 (313)
.+.+....|.+.|.+. . ...+ +.+...|.....||.+ ||+|++..||+|++.
T Consensus 223 a~~~~~~~r~i~R~~~~r~~a~~d~~~~~~~y~~~~~~ea~~~a~~~w~~i~~~nl~~~I~Ptk~rADlIi~~ 295 (308)
T d1sq5a_ 223 APEDLLQTWYINRFLKFREGAFTDPDSYFHNYAKLTKEEAIKTAMTLWKEINWLNLKQNILPTRERASLILTK 295 (308)
T ss_dssp CCHHHHHHHHHHHHHHHHHTTTTCTTSTTHHHHTSCHHHHHHHHHHHHHHTHHHHHHHTTGGGGGGCSEEEEE
T ss_pred CCHHHHHHHHHHHHHHHhcccccChHHHHHHHhccCHHHHHHHHHHHHHHcchhhHHHhCccchhcceEEEEc
Confidence 9999988865533221 1 1112 2455678888999976 999999999999974
|
| >d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Uridine-cytidine kinase 2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.52 E-value=1.2e-14 Score=124.34 Aligned_cols=188 Identities=23% Similarity=0.355 Sum_probs=123.4
Q ss_pred CcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCCCCeEEEEecCCCCCCcccCCcccChHHHHH--hcCCCC
Q 021362 107 KHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHA--RRGAPW 184 (313)
Q Consensus 107 Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~~~~i~~v~qd~~~~~~~~ltv~e~~~~~~~--~~~~~~ 184 (313)
.-++||.|++|||||||.+.|+..+.....+. ....+.++++|+|+... ...+....... .+..+.
T Consensus 2 P~iIgI~G~~gSGKSTla~~L~~~l~~~~~~~---------~~~~~~vi~~D~yy~~~---~~~~~~~~~~~~~~~~~~~ 69 (213)
T d1uj2a_ 2 PFLIGVSGGTASGKSSVCAKIVQLLGQNEVDY---------RQKQVVILSQDSFYRVL---TSEQKAKALKGQFNFDHPD 69 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHTTGGGSCG---------GGCSEEEEEGGGGBCCC---CHHHHHHHHTTCSCTTSGG
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHhchhcccc---------CCCceEEEecccccccc---chhhhhhhhhcccccCCcH
Confidence 35899999999999999999998875110000 11236779999875321 11111111100 112234
Q ss_pred CccHHHHHHHHHHhhcCCCccCCCCCCcCCCcchhhhhhccCceEEEEcCCccccChhhHHHHHhhccceEEEEcChHHH
Q 021362 185 TFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEKWFIEVDLDTA 264 (313)
Q Consensus 185 ~~~~~~~~~~l~~l~~~~~~~~~~LSgG~kqRv~ia~al~~~ar~Li~d~~~lllDE~~~~~l~~l~~~~i~vtHd~~~~ 264 (313)
..+.+.+.+.+..+..+.....+.+..-...+..... ......+++.++.+++.+ ..+.++++..||++.+.+..
T Consensus 70 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~iiveg~~~l~~----~~l~~~~D~~i~v~~~~~~~ 144 (213)
T d1uj2a_ 70 AFDNELILKTLKEITEGKTVQIPVYDFVSHSRKEETV-TVYPADVVLFEGILAFYS----QEVRDLFQMKLFVDTDADTR 144 (213)
T ss_dssp GBCHHHHHHHHHHHHTTCCEEEEEEETTTTEEEEEEE-EECCCSEEEEECTTTTSS----HHHHHHCSEEEEEECCHHHH
T ss_pred HHHHHHHHhhhhhhhcCCcccccccccccccccCceE-EecccceEEecchhhhcc----HHHHhhhheeeeecCCHHHH
Confidence 4556666666676665555555544443333332211 223477899999998887 56778899999999999999
Q ss_pred HHHHhhcc-cccCCchHHHHHHHHhcCCchhH-HhhhcccCccEEeecC
Q 021362 265 MQRVLKRH-ISTGKPPDVAKWRIEYNDRPNAE-LIMKSKKNADLVIKSI 311 (313)
Q Consensus 265 ~~rv~gri-v~~G~~~ev~~~~~~~~~~~~~~-~i~~~~~~ad~ii~~~ 311 (313)
..|.+.|. ...|...+-+.+.|...++|+++ ++.|++..||+||++.
T Consensus 145 ~~R~~~Rd~~~rg~~~e~~~~~~~~~~~~~~~~~i~p~k~~ADlIi~~~ 193 (213)
T d1uj2a_ 145 LSRRVLRDISERGRDLEQILSQYITFVKPAFEEFCLPTKKYADVIIPRG 193 (213)
T ss_dssp HHHHHHHHHHHSCCCHHHHHHHHHHTHHHHHHHHTGGGGGGCSEEEETG
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHhHHHHHHHhhhhHhcCCEEEeCC
Confidence 98877554 35677666555667778888877 9999999999999764
|
| >d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Phosphoribulokinase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=99.50 E-value=4.6e-15 Score=132.75 Aligned_cols=187 Identities=13% Similarity=0.090 Sum_probs=123.8
Q ss_pred EEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCCCCeEEEEecCCCCCCcc-cCCcccChHHHHH-h----cCC
Q 021362 109 IVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLS-QLDAMEDPKEAHA-R----RGA 182 (313)
Q Consensus 109 iv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~~~~i~~v~qd~~~~~~~-~ltv~e~~~~~~~-~----~~~ 182 (313)
++||.|++||||||+.+.|..++. .. .-.+.++.+|+|+.++. .+... .-..... . +..
T Consensus 6 IIgIaG~SGSGKTTva~~l~~i~~---~~-----------~v~~~iI~~Dsfyr~~R~~~~~~-~~~~~~~~~~~~~~~~ 70 (288)
T d1a7ja_ 6 IISVTGSSGAGTSTVKHTFDQIFR---RE-----------GVKAVSIEGDAFHRFNRADMKAE-LDRRYAAGDATFSHFS 70 (288)
T ss_dssp EEEEESCC---CCTHHHHHHHHHH---HH-----------TCCEEEEEGGGGBSCCHHHHHHH-HHHHHHHTCTTCSTTS
T ss_pred EEEEECCCCCcHHHHHHHHHHHHh---hc-----------CCCeEEEeCCCCCccchhhhhhh-hhhhhhhhccCCCCCC
Confidence 899999999999999999999885 11 11356899998875421 01000 0000111 1 113
Q ss_pred CCCccHHHHHHHHHHhhcCCCccCCCCCCcCCCcchh---------hhhhccCceEEEEcCCccccChhhHHHHHhhccc
Q 021362 183 PWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVED---------DILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (313)
Q Consensus 183 ~~~~~~~~~~~~l~~l~~~~~~~~~~LSgG~kqRv~i---------a~al~~~ar~Li~d~~~lllDE~~~~~l~~l~~~ 253 (313)
|.+.+.+.+.+.++.++.+.....+.|+.-...+..- ..-+..++.+|+.|+-+.++..+- ..|+++.+-
T Consensus 71 P~A~d~dlL~~~l~~L~~g~~i~~p~Ydh~~~~~~~~~~~~~~~t~~~~~~~~~dvIivEGlh~l~~~~~-~~ir~~~Dl 149 (288)
T d1a7ja_ 71 YEANELKELERVFREYGETGQGRTRTYVHDDAEAARTGVAPGNFTDWRDFDSDSHLLFYEGLHGAVVNSE-VNIAGLADL 149 (288)
T ss_dssp GGGBCHHHHHHHHHHHHHHSCCEECCCC------CCSSCCTTSCCCCEECCSSCSEEEEEESCTTCBCSS-CBCGGGCSE
T ss_pred cccccHHHHHHHHHHHHCCCcccceeeeeecCcccccccCCCCCCcceeecCCCceEEEechhhccccch-hhhHhhcCe
Confidence 5667888889999999877777777777655444321 122345678999999988873211 246788888
Q ss_pred eEEEEcChHHHHHHHhhccc-ccCCchHHHHHHHHhcCCchhH-HhhhcccCccEEeecCC
Q 021362 254 KWFIEVDLDTAMQRVLKRHI-STGKPPDVAKWRIEYNDRPNAE-LIMKSKKNADLVIKSID 312 (313)
Q Consensus 254 ~i~vtHd~~~~~~rv~griv-~~G~~~ev~~~~~~~~~~~~~~-~i~~~~~~ad~ii~~~~ 312 (313)
.|+|.-|.++...|.+.|.+ ++|...|-+.+.|.. .+|+++ ||.|++..||++|..++
T Consensus 150 kIfVd~d~dlrliRRI~RD~~eRG~s~E~V~~~i~r-rmpdy~~yI~Pq~~~aDI~~~r~p 209 (288)
T d1a7ja_ 150 KIGVVPVINLEWIQKIHRDRATRGYTTEAVTDVILR-RMHAYVHCIVPQFSQTDINFQRVP 209 (288)
T ss_dssp EEEEEECHHHHHHHHHHHTSSSCCSCCCCHHHHHHH-HHHHHHHHTGGGGGTCSEEEEEEE
T ss_pred EEEEECCCCeEEEeeehhhhhhcCCCHHHHHHHHHh-cchHHHHHHHHhhhceeEEEEecC
Confidence 99999999999997776666 579876655666775 588876 99999999999987653
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Probab=99.29 E-value=2.1e-13 Score=112.45 Aligned_cols=129 Identities=16% Similarity=0.089 Sum_probs=77.2
Q ss_pred EEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCCC---CeEEEEec--CCCCCCcccCCcccChHHHHHhcCCCC
Q 021362 110 VGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPP---DVATVLPM--DGFHLYLSQLDAMEDPKEAHARRGAPW 184 (313)
Q Consensus 110 v~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~~---~~i~~v~q--d~~~~~~~~ltv~e~~~~~~~~~~~~~ 184 (313)
++|+||||||||||+++|+|.++ ++.|.+...+.... .+.++... ................. .+
T Consensus 3 i~I~G~~G~GKSTLl~~i~~~l~---~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~--- 71 (178)
T d1ye8a1 3 IIITGEPGVGKTTLVKKIVERLG---KRAIGFWTEEVRDPETKKRTGFRIITTEGKKKIFSSKFFTSKKL-----VG--- 71 (178)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHG---GGEEEEEEEEEC------CCEEEEEETTCCEEEEEETTCCCSSE-----ET---
T ss_pred EEEECCCCcHHHHHHHHHHhcCC---CCcceEEECCcchHHHHHhhhhhhhhhhHHHHHHhhhhhhhhhh-----hh---
Confidence 78999999999999999999999 99999887764421 11121111 10000000000000000 00
Q ss_pred CccHHHHHHHHHHhhcCCCccCCCCCCcCCCcchhhhhhccCceEEEEcCC--ccccChhhHHHHHhhccc----eEEEE
Q 021362 185 TFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGN--YLFLDGGVWKDVSSMFDE----KWFIE 258 (313)
Q Consensus 185 ~~~~~~~~~~l~~l~~~~~~~~~~LSgG~kqRv~ia~al~~~ar~Li~d~~--~lllDE~~~~~l~~l~~~----~i~vt 258 (313)
. ...+....++++|++++.++++++...+++++.|+. ....++..++.+.++... .++++
T Consensus 72 ~--------------~~~~~~~~~~~~~~~~~~~l~~~~~~~~~vlllDE~~~~~~~~~~~~~~l~~~l~~~~~~il~~~ 137 (178)
T d1ye8a1 72 S--------------YGVNVQYFEELAIPILERAYREAKKDRRKVIIIDEIGKMELFSKKFRDLVRQIMHDPNVNVVATI 137 (178)
T ss_dssp T--------------EEECHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCCSTTGGGCHHHHHHHHHHHTCTTSEEEEEC
T ss_pred h--------------hhcCcchhhhhhhhhHHHHHHHHHhcCCCceeecCCCccchhhHHHHHHHHHHhccCCCEEEEEE
Confidence 0 000111124678999999999999999999999984 333444677777776543 35788
Q ss_pred cChHH
Q 021362 259 VDLDT 263 (313)
Q Consensus 259 Hd~~~ 263 (313)
|+...
T Consensus 138 h~~~~ 142 (178)
T d1ye8a1 138 PIRDV 142 (178)
T ss_dssp CSSCC
T ss_pred ccHHH
Confidence 87653
|
| >d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein rbstp0775 species: Bacillus stearothermophilus [TaxId: 1422]
Probab=98.89 E-value=6.3e-10 Score=92.10 Aligned_cols=178 Identities=15% Similarity=0.138 Sum_probs=80.8
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCCCCeEEEEecCCCCCCcccCCcccChHHHHHhcCCCCC
Q 021362 106 VKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWT 185 (313)
Q Consensus 106 ~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~~~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~~~~ 185 (313)
..-+|||.||+|||||||++.|...+. . .| .....+.++.++............... .......
T Consensus 21 ~~~iIgI~G~~GSGKSTla~~L~~~l~---~-~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~ 84 (198)
T d1rz3a_ 21 GRLVLGIDGLSRSGKTTLANQLSQTLR---E-QG----------ISVCVFHMDDHIVERAKRYHTGNEEWF--EYYYLQW 84 (198)
T ss_dssp SSEEEEEEECTTSSHHHHHHHHHHHHH---H-TT----------CCEEEEEGGGGCCCHHHHSSSSSCHHH--HHHHTSS
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHhc---c-cc----------ccceeccccccccCHHHHHHhhccccc--ccCcchH
Confidence 345899999999999999999998885 1 11 123445666544332111111110000 0001111
Q ss_pred ccHHHHHHHHHHhhcCCCccCCCCCCcCCCcchhhhhhccCceEEEEcCCccccChhhHHHHHhhccceEEEEcChHHHH
Q 021362 186 FNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEKWFIEVDLDTAM 265 (313)
Q Consensus 186 ~~~~~~~~~l~~l~~~~~~~~~~LSgG~kqRv~ia~al~~~ar~Li~d~~~lllDE~~~~~l~~l~~~~i~vtHd~~~~~ 265 (313)
.........+..+........+.+......+..- ........+++.++.+++.. .+..+.+..|+++-+.+...
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ivi~e~~~~~~~-----~~~~~~d~~i~l~~~~e~~~ 158 (198)
T d1rz3a_ 85 DVEWLTHQLFRQLKASHQLTLPFYDHETDTHSKR-TVYLSDSDMIMIEGVFLQRK-----EWRPFFDFVVYLDCPREIRF 158 (198)
T ss_dssp CHHHHHHHTGGGTTTCSEEEEEEEETTTTEEEEE-EEECTTCSEEEEEETTTTST-----TTGGGCSEEEEECCC-----
T ss_pred HHHHHHHHHHHHhhccCccccccchhhhcccccc-ccccccccccccccchhccc-----cccccceeeeeccCcHHHHH
Confidence 2222222222333233333333222222122111 11223355777777665543 45666777899999999888
Q ss_pred HHHhhcccccCCchHHHHHHHHhcCCchhHHhhhcccCccEEee
Q 021362 266 QRVLKRHISTGKPPDVAKWRIEYNDRPNAELIMKSKKNADLVIK 309 (313)
Q Consensus 266 ~rv~griv~~G~~~ev~~~~~~~~~~~~~~~i~~~~~~ad~ii~ 309 (313)
.|.+.| .|...+-...+|........+++.| +..||+||+
T Consensus 159 ~R~~~r---~~~~~~~~~~~~~~~~~~y~~~~~p-~~~ADiIid 198 (198)
T d1rz3a_ 159 ARENDQ---VKQNIQKFINRYWKAEDYYLETEEP-IKRADVVFD 198 (198)
T ss_dssp ------------CHHHHHHHHHHHHHHHHHHHCH-HHHCSEEEC
T ss_pred HHHHHH---cCCCHHHHHHHHHHHHHHHHHhcCh-HHhCCEEeC
Confidence 776644 3554444444444322222336655 568999985
|
| >d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein Ygr205W species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.65 E-value=1.6e-08 Score=89.69 Aligned_cols=120 Identities=23% Similarity=0.352 Sum_probs=83.1
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCCCCeEEEEecCCCCCCcccCCcccChHHH--------H
Q 021362 106 VKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEA--------H 177 (313)
Q Consensus 106 ~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~~~~i~~v~qd~~~~~~~~ltv~e~~~~~--------~ 177 (313)
..-++||.|+.|||||||.+.|.-.+.. ..| ....+.++++|+|++.. .|...+. +
T Consensus 26 ~P~iIGi~G~qGSGKSTl~~~l~~~L~~---~~~--------~~~~v~~iS~DdfY~t~-----~~r~~L~~~~~~~pl~ 89 (286)
T d1odfa_ 26 CPLFIFFSGPQGSGKSFTSIQIYNHLME---KYG--------GEKSIGYASIDDFYLTH-----EDQLKLNEQFKNNKLL 89 (286)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHHH---HHG--------GGSCEEEEEGGGGBCCH-----HHHHHHHHHTTTCGGG
T ss_pred CCEEEEeECCCCCCHHHHHHHHHHHHHH---HhC--------CCcceEeeccCCCCCCH-----HHHHHHhhhccccccc
Confidence 3469999999999999999988766531 000 11247788999886542 2222221 1
Q ss_pred HhcCCCCCccHHHHHHHHHHhhcCC------CccCCCCC----CcCCCcchhhhhhccCceEEEEcCCccccCh
Q 021362 178 ARRGAPWTFNPLLLLNCLKNLRNQG------SVYAPSFD----HGVGDPVEDDILVGLQHKVVIVDGNYLFLDG 241 (313)
Q Consensus 178 ~~~~~~~~~~~~~~~~~l~~l~~~~------~~~~~~LS----gG~kqRv~ia~al~~~ar~Li~d~~~lllDE 241 (313)
..+|.|.+.|.+.+.+.|+.+.... ...+|.|+ .|...|+.-...+..+++++|+|+-++++.+
T Consensus 90 ~~RG~PgThD~~ll~~~l~~l~~~~~~~~~~~v~iP~fDk~~~~~~~Dr~~~~~~i~~~~dviI~EGWcvG~~p 163 (286)
T d1odfa_ 90 QGRGLPGTHDMKLLQEVLNTIFNNNEHPDQDTVVLPKYDKSQFKGEGDRCPTGQKIKLPVDIFILEGWFLGFNP 163 (286)
T ss_dssp SSSCSTTSBCHHHHHHHHHHHTC------CCEEEECCEETTHHHHTCEECSSCEEEESSCSEEEEEESSTTCCC
T ss_pred eecCCCcchhHHHHHHHHHHHHhhccccccccccCCchHHHhhccccccCcccceecCCCCEEEEechhhcccc
Confidence 2368899999999999999886332 35677776 5667777655556667899999998888765
|
| >d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Escherichia coli [TaxId: 562]
Probab=97.81 E-value=5.4e-06 Score=65.90 Aligned_cols=24 Identities=25% Similarity=0.479 Sum_probs=22.4
Q ss_pred EEEEECCCCCcHHHHHHHHHHHhc
Q 021362 109 IVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 109 iv~l~GpNGsGKSTLlk~l~gl~~ 132 (313)
+++|+|++|||||||++.|...+.
T Consensus 4 vi~itG~~GSGKTTL~~~L~~~l~ 27 (170)
T d1np6a_ 4 LLAFAAWSGTGKTTLLKKLIPALC 27 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHH
Confidence 789999999999999999998875
|
| >d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.74 E-value=7.4e-06 Score=66.79 Aligned_cols=26 Identities=38% Similarity=0.562 Sum_probs=23.8
Q ss_pred CcEEEEECCCCCcHHHHHHHHHHHhc
Q 021362 107 KHIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 107 Geiv~l~GpNGsGKSTLlk~l~gl~~ 132 (313)
|.++.|+||||||||||++.|....+
T Consensus 2 G~iivl~GpsG~GK~tl~~~L~~~~~ 27 (182)
T d1znwa1 2 GRVVVLSGPSAVGKSTVVRCLRERIP 27 (182)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred CeEEEEECCCCCCHHHHHHHHHhhCC
Confidence 78999999999999999999988763
|
| >d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Gluconate kinase domain: Gluconate kinase species: Escherichia coli [TaxId: 562]
Probab=97.72 E-value=1e-05 Score=64.46 Aligned_cols=28 Identities=39% Similarity=0.617 Sum_probs=25.9
Q ss_pred CCCcEEEEECCCCCcHHHHHHHHHHHhc
Q 021362 105 NVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 105 ~~Geiv~l~GpNGsGKSTLlk~l~gl~~ 132 (313)
+.+.++.|+||+||||||+.+.|+..+.
T Consensus 4 ~~~~iivl~G~~GsGKsT~a~~La~~l~ 31 (171)
T d1knqa_ 4 HDHHIYVLMGVSGSGKSAVASEVAHQLH 31 (171)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHHT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 5788999999999999999999999885
|
| >d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ATP sulfurylase C-terminal domain domain: ATP sulfurylase C-terminal domain species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=97.72 E-value=1e-05 Score=64.46 Aligned_cols=28 Identities=21% Similarity=0.269 Sum_probs=26.1
Q ss_pred CCCcEEEEECCCCCcHHHHHHHHHHHhc
Q 021362 105 NVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 105 ~~Geiv~l~GpNGsGKSTLlk~l~gl~~ 132 (313)
.+|.+|.|+|++||||||+.+.|+-.+.
T Consensus 4 ~~g~~I~l~G~~GsGKTTia~~La~~L~ 31 (183)
T d1m8pa3 4 TQGFTIFLTGYMNSGKDAIARALQVTLN 31 (183)
T ss_dssp TCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 5799999999999999999999998885
|
| >d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cell division protein MukB species: Escherichia coli [TaxId: 562]
Probab=97.70 E-value=6.5e-07 Score=72.92 Aligned_cols=36 Identities=31% Similarity=0.292 Sum_probs=29.4
Q ss_pred cccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhc
Q 021362 96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 96 ~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~ 132 (313)
.+++.+|++.+| ++.|+|||||||||++.+|.-.+.
T Consensus 14 ~~~~~~i~f~~~-~tvi~G~NGsGKStil~Ai~~~L~ 49 (222)
T d1qhla_ 14 GFFARTFDLDEL-VTTLSGGNGAGKSTTMAAFVTALI 49 (222)
T ss_dssp TEEEEEECHHHH-HHHHHSCCSHHHHHHHHHHHHHHS
T ss_pred CEeeEEEEcCCC-eEEEECCCCCCHHHHHHHHHHHhc
Confidence 445666777665 889999999999999999987764
|
| >d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Cancer-related NTPase, C1orf57 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.67 E-value=9e-06 Score=64.99 Aligned_cols=31 Identities=32% Similarity=0.454 Sum_probs=26.0
Q ss_pred EEEEECCCCCcHHHHHHHHHHHhcccCCCCceee
Q 021362 109 IVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSF 142 (313)
Q Consensus 109 iv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~ 142 (313)
.+.|.||+|+|||||++.++..+. ...+.+.
T Consensus 3 ~v~ItG~~GtGKTtl~~~i~~~l~---~~~~~v~ 33 (189)
T d2i3ba1 3 HVFLTGPPGVGKTTLIHKASEVLK---SSGVPVD 33 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHHHH---HTTCCCE
T ss_pred EEEEECCCCCcHHHHHHHHHHHHH---HCCCEEE
Confidence 478999999999999999999997 5554443
|
| >d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein Atu3015 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=97.65 E-value=1.1e-05 Score=64.29 Aligned_cols=27 Identities=37% Similarity=0.514 Sum_probs=24.2
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHHHhc
Q 021362 106 VKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 106 ~Geiv~l~GpNGsGKSTLlk~l~gl~~ 132 (313)
.|.++.|.||+||||||+.+.|+..+.
T Consensus 3 ~g~iI~l~G~~GsGKSTia~~La~~lg 29 (176)
T d1zp6a1 3 GGNILLLSGHPGSGKSTIAEALANLPG 29 (176)
T ss_dssp TTEEEEEEECTTSCHHHHHHHHHTCSS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 589999999999999999999987653
|
| >d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Bacillus stearothermophilus [TaxId: 1422]
Probab=97.62 E-value=1.5e-05 Score=63.77 Aligned_cols=25 Identities=24% Similarity=0.270 Sum_probs=22.6
Q ss_pred cEEEEECCCCCcHHHHHHHHHHHhc
Q 021362 108 HIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 108 eiv~l~GpNGsGKSTLlk~l~gl~~ 132 (313)
.+++|+|++|||||||++.|...++
T Consensus 2 kii~I~G~~gSGKTTli~~l~~~L~ 26 (165)
T d1xjca_ 2 NVWQVVGYKHSGKTTLMEKWVAAAV 26 (165)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred cEEEEEeCCCCCHHHHHHHHHHHHH
Confidence 3789999999999999998888875
|
| >d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Chloramphenicol phosphotransferase domain: Chloramphenicol phosphotransferase species: Streptomyces venezuelae [TaxId: 54571]
Probab=97.56 E-value=2.1e-05 Score=62.43 Aligned_cols=26 Identities=23% Similarity=0.308 Sum_probs=23.9
Q ss_pred CcEEEEECCCCCcHHHHHHHHHHHhc
Q 021362 107 KHIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 107 Geiv~l~GpNGsGKSTLlk~l~gl~~ 132 (313)
..+|.|.|++||||||+.+.|+..+.
T Consensus 3 ~kiI~l~G~~GsGKsTva~~L~~~l~ 28 (178)
T d1qhxa_ 3 TRMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHcC
Confidence 56899999999999999999999884
|
| >d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.54 E-value=2.2e-05 Score=71.36 Aligned_cols=60 Identities=10% Similarity=-0.032 Sum_probs=43.5
Q ss_pred CCCCCcCCCcchhhhhh----ccCceEEEEcCCccccCh----hhHHHHHhhcc---ceEEEEcChHHHHH
Q 021362 207 PSFDHGVGDPVEDDILV----GLQHKVVIVDGNYLFLDG----GVWKDVSSMFD---EKWFIEVDLDTAMQ 266 (313)
Q Consensus 207 ~~LSgG~kqRv~ia~al----~~~ar~Li~d~~~lllDE----~~~~~l~~l~~---~~i~vtHd~~~~~~ 266 (313)
..+|||||.++++|..+ ..+..++++|++..-||+ .+.+.|.++.. +.|++||+...+..
T Consensus 331 ~~lSgGEk~~~~lal~lal~~~~~~pililDE~d~~Ld~~~~~~~~~~l~~~~~~~~Q~I~iTH~~~~~~~ 401 (427)
T d1w1wa_ 331 EYLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFIVISLKNTMFEK 401 (427)
T ss_dssp GGSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCBTTBEEEEECSCHHHHTT
T ss_pred hhhccchHHHHHHHHHHHHhcCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhCCCCEEEEEeCCHHHHHh
Confidence 46799999987775443 346668889999999998 45555554432 35899999997754
|
| >d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=97.48 E-value=3.9e-05 Score=61.35 Aligned_cols=25 Identities=24% Similarity=0.492 Sum_probs=23.4
Q ss_pred cEEEEECCCCCcHHHHHHHHHHHhc
Q 021362 108 HIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 108 eiv~l~GpNGsGKSTLlk~l~gl~~ 132 (313)
.+++|.|++||||||+++.|+..+.
T Consensus 2 kiI~i~G~~GsGKsT~~~~L~~~l~ 26 (190)
T d1khta_ 2 KVVVVTGVPGVGSTTSSQLAMDNLR 26 (190)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHH
Confidence 5899999999999999999999886
|
| >d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain species: Haemophilus influenzae [TaxId: 727]
Probab=97.48 E-value=2.7e-05 Score=62.11 Aligned_cols=25 Identities=28% Similarity=0.436 Sum_probs=22.8
Q ss_pred cEEEEECCCCCcHHHHHHHHHHHhc
Q 021362 108 HIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 108 eiv~l~GpNGsGKSTLlk~l~gl~~ 132 (313)
..++|.||+|||||||++.|+..+.
T Consensus 8 K~I~i~G~~GsGKTTla~~La~~~~ 32 (192)
T d1lw7a2 8 KTVAILGGESSGKSVLVNKLAAVFN 32 (192)
T ss_dssp EEEEEECCTTSHHHHHHHHHHHHTT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4689999999999999999999875
|
| >d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: ATP(GTP)-binding protein PAB0955 species: Pyrococcus abyssi [TaxId: 29292]
Probab=97.47 E-value=6.1e-05 Score=63.19 Aligned_cols=24 Identities=42% Similarity=0.650 Sum_probs=21.5
Q ss_pred EEEEECCCCCcHHHHHHHHHHHhc
Q 021362 109 IVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 109 iv~l~GpNGsGKSTLlk~l~gl~~ 132 (313)
+++|+|+.|||||||++.|.....
T Consensus 2 vi~v~G~~GsGKTTLl~~ll~~~~ 25 (244)
T d1yrba1 2 IVVFVGTAGSGKTTLTGEFGRYLE 25 (244)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHT
T ss_pred EEEEEcCCCCcHHHHHHHHHHHHh
Confidence 789999999999999999987663
|
| >d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Thermotoga maritima [TaxId: 2336]
Probab=97.45 E-value=3.4e-05 Score=67.49 Aligned_cols=61 Identities=11% Similarity=-0.099 Sum_probs=41.7
Q ss_pred CCCCCCcCCCcchhhhh----hccCceEEEEcCCccccChh----hHHHHHhhcc--ceEEEEcChHHHHH
Q 021362 206 APSFDHGVGDPVEDDIL----VGLQHKVVIVDGNYLFLDGG----VWKDVSSMFD--EKWFIEVDLDTAMQ 266 (313)
Q Consensus 206 ~~~LSgG~kqRv~ia~a----l~~~ar~Li~d~~~lllDE~----~~~~l~~l~~--~~i~vtHd~~~~~~ 266 (313)
+..+|+|+|+...++.. ......+++.|++=.-|++. +.+.|++..+ +.|++||.+..+..
T Consensus 217 ~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~iDEpe~~Lhp~~~~~l~~~l~~~~~~~QviitTHsp~~~~~ 287 (308)
T d1e69a_ 217 LSLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKENSKHTQFIVITHNKIVMEA 287 (308)
T ss_dssp GGGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHHHHHHHTTTSEEEEECCCTTGGGG
T ss_pred hhhhhHHHhhHHHHHhhhhhhhhccCchhhhhhccccCCHHHHHHHHHHHHHhccCCEEEEEECCHHHHHh
Confidence 45889999998766443 34456777778777778873 4445554443 35799999887643
|
| >d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Probable kinase LmjF30.1890 species: Leishmania major [TaxId: 5664]
Probab=97.45 E-value=3.9e-05 Score=61.00 Aligned_cols=28 Identities=21% Similarity=0.464 Sum_probs=24.9
Q ss_pred CCCcEEEEECCCCCcHHHHHHHHHHHhc
Q 021362 105 NVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 105 ~~Geiv~l~GpNGsGKSTLlk~l~gl~~ 132 (313)
++|-.+.|.||+||||||+.+.|+..+.
T Consensus 3 pk~~~I~i~G~~GsGKTT~~~~La~~l~ 30 (174)
T d1y63a_ 3 PKGINILITGTPGTGKTSMAEMIAAELD 30 (174)
T ss_dssp CSSCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred CCCCEEEEEeCCCCCHHHHHHHHHHHhC
Confidence 4677899999999999999999998764
|
| >d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Polynucleotide kinase, kinase domain species: Bacteriophage T4 [TaxId: 10665]
Probab=97.44 E-value=3.5e-05 Score=60.07 Aligned_cols=23 Identities=43% Similarity=0.645 Sum_probs=19.8
Q ss_pred cEEEEECCCCCcHHHHHHHHHHH
Q 021362 108 HIVGLAGPPGAGKSTLAAEVVRR 130 (313)
Q Consensus 108 eiv~l~GpNGsGKSTLlk~l~gl 130 (313)
+++.|.|++|||||||++.|..-
T Consensus 3 klIii~G~pGsGKTTla~~L~~~ 25 (152)
T d1ly1a_ 3 KIILTIGCPGSGKSTWAREFIAK 25 (152)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHh
Confidence 47889999999999999987653
|
| >d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.42 E-value=2.4e-05 Score=63.47 Aligned_cols=27 Identities=30% Similarity=0.345 Sum_probs=25.1
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHHHhc
Q 021362 106 VKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 106 ~Geiv~l~GpNGsGKSTLlk~l~gl~~ 132 (313)
+|-++.|+|++||||||+.+.|+-.+.
T Consensus 18 ~g~vI~L~G~pGSGKTTiAk~La~~l~ 44 (195)
T d1x6va3 18 RGCTVWLTGLSGAGKTTVSMALEEYLV 44 (195)
T ss_dssp CCEEEEEESSCHHHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 688999999999999999999998875
|
| >d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein BH3686 species: Bacillus halodurans [TaxId: 86665]
Probab=97.41 E-value=4e-05 Score=60.45 Aligned_cols=25 Identities=28% Similarity=0.586 Sum_probs=22.6
Q ss_pred cEEEEECCCCCcHHHHHHHHHHHhc
Q 021362 108 HIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 108 eiv~l~GpNGsGKSTLlk~l~gl~~ 132 (313)
.++.|.||+||||||+++.|+..+.
T Consensus 3 klI~i~G~~GsGKTTva~~L~~~~~ 27 (176)
T d2bdta1 3 KLYIITGPAGVGKSTTCKRLAAQLD 27 (176)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHSS
T ss_pred eEEEEECCCCCCHHHHHHHHHHHcC
Confidence 4789999999999999999998774
|
| >d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Escherichia coli [TaxId: 562]
Probab=97.40 E-value=4.1e-05 Score=63.92 Aligned_cols=26 Identities=27% Similarity=0.455 Sum_probs=23.9
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHHHh
Q 021362 106 VKHIVGLAGPPGAGKSTLAAEVVRRI 131 (313)
Q Consensus 106 ~Geiv~l~GpNGsGKSTLlk~l~gl~ 131 (313)
+|.++.|+||||||||||++.|.-..
T Consensus 1 ~G~livi~GPSG~GK~tl~~~L~~~~ 26 (205)
T d1s96a_ 1 QGTLYIVSAPSGAGKSSLIQALLKTQ 26 (205)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhhC
Confidence 58899999999999999999988876
|
| >d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Escherichia coli [TaxId: 562]
Probab=97.39 E-value=4.3e-05 Score=59.53 Aligned_cols=24 Identities=42% Similarity=0.700 Sum_probs=21.6
Q ss_pred EEEEECCCCCcHHHHHHHHHHHhc
Q 021362 109 IVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 109 iv~l~GpNGsGKSTLlk~l~gl~~ 132 (313)
.+.|+||+||||||+.+.|+-.+.
T Consensus 4 ~I~l~G~~GsGKSTvak~La~~L~ 27 (169)
T d1kaga_ 4 NIFLVGPMGAGKSTIGRQLAQQLN 27 (169)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHTT
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC
Confidence 467889999999999999999875
|
| >d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Thermotoga maritima [TaxId: 2336]
Probab=97.36 E-value=3.3e-05 Score=65.44 Aligned_cols=34 Identities=24% Similarity=0.295 Sum_probs=25.8
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceee
Q 021362 106 VKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSF 142 (313)
Q Consensus 106 ~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~ 142 (313)
+|...+++|+||+|||||+|.|.+-.. -..|+|.
T Consensus 94 ~~kt~~~~G~SGVGKSTLiN~L~~~~~---~~T~~vs 127 (225)
T d1u0la2 94 KGKISTMAGLSGVGKSSLLNAINPGLK---LRVSEVS 127 (225)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHSTTCC---CC-----
T ss_pred cCCeEEEECCCCCCHHHHHHhhcchhh---hhccCcc
Confidence 689999999999999999999988665 5556654
|
| >d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermus aquaticus [TaxId: 271]
Probab=97.33 E-value=0.00015 Score=60.53 Aligned_cols=58 Identities=21% Similarity=0.138 Sum_probs=40.5
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCCCCeEEEEecCCCCCCcccCCcccChHHHHHhcCC
Q 021362 106 VKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGA 182 (313)
Q Consensus 106 ~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~~~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~ 182 (313)
++.++.++||+|+||||.+--|+..+. - ..++++++.-|.|- .-..|.+.......+.
T Consensus 5 ~~~vi~lvGptGvGKTTTiaKLA~~~~---~-----------~g~kV~lit~Dt~R-----~gA~eQL~~~a~~l~i 62 (207)
T d1okkd2 5 KGRVVLVVGVNGVGKTTTIAKLGRYYQ---N-----------LGKKVMFCAGDTFR-----AAGGTQLSEWGKRLSI 62 (207)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHH---T-----------TTCCEEEECCCCSS-----TTHHHHHHHHHHHHTC
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHH---H-----------CCCcEEEEEecccc-----ccchhhHhhcccccCc
Confidence 578999999999999999988887765 1 23458888888542 2345555555554443
|
| >d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]
Probab=97.31 E-value=6.1e-05 Score=59.54 Aligned_cols=23 Identities=39% Similarity=0.707 Sum_probs=20.7
Q ss_pred EEEECCCCCcHHHHHHHHHHHhc
Q 021362 110 VGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 110 v~l~GpNGsGKSTLlk~l~gl~~ 132 (313)
+.|+||+||||||+.+.|+--+.
T Consensus 7 I~i~G~pGsGKTTia~~La~~l~ 29 (173)
T d1rkba_ 7 ILLTGTPGVGKTTLGKELASKSG 29 (173)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHHHHC
Confidence 56999999999999999998774
|
| >d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Dictyostelium discoideum [TaxId: 44689]
Probab=97.29 E-value=7.1e-05 Score=61.07 Aligned_cols=28 Identities=36% Similarity=0.586 Sum_probs=24.6
Q ss_pred CCCcEEEEECCCCCcHHHHHHHHHHHhc
Q 021362 105 NVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 105 ~~Geiv~l~GpNGsGKSTLlk~l~gl~~ 132 (313)
.+..++.|+||.||||||+.+.|+..+.
T Consensus 4 ~kp~iI~i~G~pGSGKsT~a~~La~~~g 31 (194)
T d1qf9a_ 4 SKPNVVFVLGGPGSGKGTQCANIVRDFG 31 (194)
T ss_dssp CCCEEEEEEESTTSSHHHHHHHHHHHHC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHC
Confidence 3557999999999999999999998774
|
| >d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermotoga maritima [TaxId: 2336]
Probab=97.27 E-value=0.00017 Score=60.40 Aligned_cols=47 Identities=17% Similarity=0.275 Sum_probs=35.2
Q ss_pred cccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCCCCeEEEEecCCC
Q 021362 100 LASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGF 160 (313)
Q Consensus 100 vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~~~~i~~v~qd~~ 160 (313)
+++.-++..+++++||+|+||||.+--|+..+.. ..++++++.-|.|
T Consensus 4 l~~~~~~p~vi~lvGptGvGKTTTiAKLAa~~~~--------------~~~kV~lit~Dt~ 50 (213)
T d1vmaa2 4 LNVPPEPPFVIMVVGVNGTGKTTSCGKLAKMFVD--------------EGKSVVLAAADTF 50 (213)
T ss_dssp CCCCSSSCEEEEEECCTTSSHHHHHHHHHHHHHH--------------TTCCEEEEEECTT
T ss_pred CcCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHH--------------CCCceEEEeeccc
Confidence 3445567789999999999999998777766641 2346888888854
|
| >d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Uridylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.23 E-value=9.4e-05 Score=60.48 Aligned_cols=28 Identities=29% Similarity=0.508 Sum_probs=24.7
Q ss_pred CCCcEEEEECCCCCcHHHHHHHHHHHhc
Q 021362 105 NVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 105 ~~Geiv~l~GpNGsGKSTLlk~l~gl~~ 132 (313)
.+-.++.|+||.||||||+.+.|+..+.
T Consensus 6 ~~~~iI~i~GppGSGKsT~a~~La~~~g 33 (196)
T d1ukza_ 6 DQVSVIFVLGGPGAGKGTQCEKLVKDYS 33 (196)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHHHSS
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4556899999999999999999998774
|
| >d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Escherichia coli [TaxId: 562]
Probab=97.22 E-value=0.00022 Score=59.67 Aligned_cols=46 Identities=17% Similarity=0.293 Sum_probs=34.1
Q ss_pred ccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCCCCeEEEEecCCC
Q 021362 101 ASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGF 160 (313)
Q Consensus 101 sl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~~~~i~~v~qd~~ 160 (313)
+++-++..++.++||+|+||||.+--|+-.+. - ..++++++.-|.|
T Consensus 3 ~~~~~~p~vi~lvGptGvGKTTTiAKLA~~~~---~-----------~g~kV~lit~Dt~ 48 (211)
T d2qy9a2 3 NVEGKAPFVILMVGVNGVGKTTTIGKLARQFE---Q-----------QGKSVMLAAGDTF 48 (211)
T ss_dssp CCCSCTTEEEEEECCTTSCHHHHHHHHHHHHH---T-----------TTCCEEEECCCTT
T ss_pred CCCCCCCEEEEEECCCCCCHHHHHHHHHHHHH---H-----------CCCcEEEEecccc
Confidence 33444557999999999999999988887775 1 2245888888854
|
| >d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=97.16 E-value=9.1e-05 Score=60.57 Aligned_cols=30 Identities=27% Similarity=0.553 Sum_probs=26.4
Q ss_pred ccCCCcEEEEECCCCCcHHHHHHHHHHHhc
Q 021362 103 NVNVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 103 ~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~ 132 (313)
.+.++.++.|+||+||||||+.+.|+.-+.
T Consensus 4 ~~~~~~iI~l~G~pGSGKsT~a~~La~~~g 33 (194)
T d3adka_ 4 KLKKSKIIFVVGGPGSGKGTQCEKIVQKYG 33 (194)
T ss_dssp HHHTSCEEEEEECTTSSHHHHHHHHHHHTC
T ss_pred cccCCcEEEEECCCCCCHHHHHHHHHHHhC
Confidence 356788999999999999999999998764
|
| >d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]
Probab=97.15 E-value=9.8e-05 Score=59.17 Aligned_cols=25 Identities=40% Similarity=0.546 Sum_probs=22.7
Q ss_pred cEEEEECCCCCcHHHHHHHHHHHhc
Q 021362 108 HIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 108 eiv~l~GpNGsGKSTLlk~l~gl~~ 132 (313)
.++.|.|++||||||+++.|+..+.
T Consensus 2 kiivi~G~~GsGKTT~~~~La~~L~ 26 (194)
T d1nksa_ 2 KIGIVTGIPGVGKSTVLAKVKEILD 26 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH
Confidence 3678899999999999999999985
|
| >d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Bacillus subtilis [TaxId: 1423]
Probab=97.15 E-value=7.4e-05 Score=61.02 Aligned_cols=22 Identities=32% Similarity=0.582 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHHHH
Q 021362 109 IVGLAGPPGAGKSTLAAEVVRR 130 (313)
Q Consensus 109 iv~l~GpNGsGKSTLlk~l~gl 130 (313)
.++|+|+.|+|||||++.|.|.
T Consensus 25 ~I~lvG~~n~GKSTLin~L~g~ 46 (195)
T d1svia_ 25 EIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHhcCC
Confidence 4999999999999999999985
|
| >d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Bacillus subtilis [TaxId: 1423]
Probab=97.08 E-value=3.2e-05 Score=65.72 Aligned_cols=34 Identities=21% Similarity=0.286 Sum_probs=22.6
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceee
Q 021362 106 VKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSF 142 (313)
Q Consensus 106 ~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~ 142 (313)
+|....++|+||+|||||+|.|.|-.. -..|+|.
T Consensus 96 ~~~~~vl~G~SGVGKSSLiN~L~~~~~---~~t~~vs 129 (231)
T d1t9ha2 96 QDKTTVFAGQSGVGKSSLLNAISPELG---LRTNEIS 129 (231)
T ss_dssp TTSEEEEEESHHHHHHHHHHHHCC-------------
T ss_pred ccceEEEECCCCccHHHHHHhhccHhH---hhhcccc
Confidence 678889999999999999999998765 5566665
|
| >d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.08 E-value=0.00013 Score=59.39 Aligned_cols=22 Identities=36% Similarity=0.676 Sum_probs=20.1
Q ss_pred EEEECCCCCcHHHHHHHHHHHh
Q 021362 110 VGLAGPPGAGKSTLAAEVVRRI 131 (313)
Q Consensus 110 v~l~GpNGsGKSTLlk~l~gl~ 131 (313)
+.|+||+|||||||++.|+...
T Consensus 4 Ivl~GpsG~GK~tl~~~L~~~~ 25 (186)
T d1gkya_ 4 IVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHHhC
Confidence 6799999999999999998776
|
| >d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Campylobacter jejuni [TaxId: 197]
Probab=97.05 E-value=0.00016 Score=57.45 Aligned_cols=23 Identities=35% Similarity=0.561 Sum_probs=21.2
Q ss_pred EEEECCCCCcHHHHHHHHHHHhc
Q 021362 110 VGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 110 v~l~GpNGsGKSTLlk~l~gl~~ 132 (313)
+.|+|++||||||+.+.|+..+.
T Consensus 3 I~liG~~GsGKsTi~k~La~~l~ 25 (161)
T d1viaa_ 3 IVFIGFMGSGKSTLARALAKDLD 25 (161)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHhC
Confidence 57889999999999999999885
|
| >d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase-like domain of Cask species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.05 E-value=0.00017 Score=58.56 Aligned_cols=24 Identities=17% Similarity=0.415 Sum_probs=21.4
Q ss_pred cEEEEECCCCCcHHHHHHHHHHHh
Q 021362 108 HIVGLAGPPGAGKSTLAAEVVRRI 131 (313)
Q Consensus 108 eiv~l~GpNGsGKSTLlk~l~gl~ 131 (313)
..+.|+||+|+|||||++.|....
T Consensus 4 k~ivl~Gpsg~GK~tl~~~L~~~~ 27 (178)
T d1kgda_ 4 KTLVLLGAHGVGRRHIKNTLITKH 27 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CcEEEECCCCCCHHHHHHHHHHhC
Confidence 578999999999999999988765
|
| >d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]
Probab=97.03 E-value=0.00021 Score=57.95 Aligned_cols=28 Identities=36% Similarity=0.494 Sum_probs=24.2
Q ss_pred CCCcEEEEECCCCCcHHHHHHHHHHHhc
Q 021362 105 NVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 105 ~~Geiv~l~GpNGsGKSTLlk~l~gl~~ 132 (313)
++|-.+.|+||.||||||+.+.|+.-+.
T Consensus 1 p~~~riil~G~pGSGKsT~a~~La~~~g 28 (190)
T d1ak2a1 1 PKGVRAVLLGPPGAGKGTQAPKLAKNFC 28 (190)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCccEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3567788999999999999999997764
|
| >d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=97.03 E-value=0.00017 Score=58.97 Aligned_cols=23 Identities=48% Similarity=0.716 Sum_probs=20.6
Q ss_pred EEEECCCCCcHHHHHHHHHHHhc
Q 021362 110 VGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 110 v~l~GpNGsGKSTLlk~l~gl~~ 132 (313)
+.|+||+|||||||++.|....+
T Consensus 3 Ivl~GPsGsGK~tl~~~L~~~~~ 25 (190)
T d1lvga_ 3 VVLSGPSGAGKSTLLKKLFQEHS 25 (190)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHhCC
Confidence 56999999999999999988763
|
| >d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.02 E-value=0.00019 Score=58.31 Aligned_cols=24 Identities=42% Similarity=0.656 Sum_probs=22.2
Q ss_pred EEEEECCCCCcHHHHHHHHHHHhc
Q 021362 109 IVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 109 iv~l~GpNGsGKSTLlk~l~gl~~ 132 (313)
++.|+||.||||||..+.|+..+.
T Consensus 3 iI~i~GppGSGKsT~a~~La~~~g 26 (194)
T d1teva_ 3 VVFVLGGPGAGKGTQCARIVEKYG 26 (194)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 789999999999999999998774
|
| >d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=97.02 E-value=0.00021 Score=57.66 Aligned_cols=26 Identities=38% Similarity=0.438 Sum_probs=22.5
Q ss_pred cCCCcEEEEECCCCCcHHHHHHHHHH
Q 021362 104 VNVKHIVGLAGPPGAGKSTLAAEVVR 129 (313)
Q Consensus 104 i~~Geiv~l~GpNGsGKSTLlk~l~g 129 (313)
-++.+++.++|++||||||+++.++.
T Consensus 11 ~~~p~liil~G~pGsGKST~a~~l~~ 36 (172)
T d1yj5a2 11 SPNPEVVVAVGFPGAGKSTFIQEHLV 36 (172)
T ss_dssp CSSCCEEEEECCTTSSHHHHHHHHTG
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHH
Confidence 46778999999999999999987754
|
| >d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit species: Streptococcus pyogenes [TaxId: 1314]
Probab=97.01 E-value=0.00018 Score=61.12 Aligned_cols=30 Identities=27% Similarity=0.496 Sum_probs=25.5
Q ss_pred ccCCCcEEEEECCCCCcHHHHHHHHHHHhc
Q 021362 103 NVNVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 103 ~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~ 132 (313)
.......+.|.||+|||||||++.|++.+.
T Consensus 28 ~~~~P~~ilL~GpPGtGKT~la~~la~~~~ 57 (273)
T d1gvnb_ 28 AVESPTAFLLGGQPGSGKTSLRSAIFEETQ 57 (273)
T ss_dssp CCSSCEEEEEECCTTSCTHHHHHHHHHHTT
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHHHhh
Confidence 344556788999999999999999999875
|
| >d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Thermus aquaticus [TaxId: 271]
Probab=97.01 E-value=0.00045 Score=57.51 Aligned_cols=41 Identities=22% Similarity=0.214 Sum_probs=31.8
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCCCCeEEEEecCCC
Q 021362 106 VKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGF 160 (313)
Q Consensus 106 ~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~~~~i~~v~qd~~ 160 (313)
.+.++.++||+|+||||.+--|+..+. . ..++++++.-|.|
T Consensus 9 ~~~vi~lvGp~GvGKTTTiaKLA~~~~----~----------~g~kV~lit~Dt~ 49 (207)
T d1ls1a2 9 DRNLWFLVGLQGSGKTTTAAKLALYYK----G----------KGRRPLLVAADTQ 49 (207)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHHHH----H----------TTCCEEEEECCSS
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHH----H----------CCCcEEEEecccc
Confidence 456889999999999999988887775 1 2245788888854
|
| >d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Escherichia coli [TaxId: 562]
Probab=96.97 E-value=0.00022 Score=58.70 Aligned_cols=24 Identities=33% Similarity=0.736 Sum_probs=22.8
Q ss_pred EEEEECCCCCcHHHHHHHHHHHhc
Q 021362 109 IVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 109 iv~l~GpNGsGKSTLlk~l~gl~~ 132 (313)
|++|.||+||||||+.+.|+.-+.
T Consensus 5 iI~I~GppGSGKgT~ak~La~~~g 28 (225)
T d1ckea_ 5 VITIDGPSGAGKGTLCKAMAEALQ 28 (225)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 899999999999999999999885
|
| >d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=96.97 E-value=0.00022 Score=58.23 Aligned_cols=25 Identities=24% Similarity=0.566 Sum_probs=22.8
Q ss_pred cEEEEECCCCCcHHHHHHHHHHHhc
Q 021362 108 HIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 108 eiv~l~GpNGsGKSTLlk~l~gl~~ 132 (313)
-++.++|.+|||||||++.|+..+.
T Consensus 3 ~li~l~GlpgsGKSTla~~L~~~l~ 27 (213)
T d1bifa1 3 TLIVMVGLPARGKTYISKKLTRYLN 27 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4789999999999999999998875
|
| >d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Erwinia chrysanthemi [TaxId: 556]
Probab=96.96 E-value=0.00022 Score=56.93 Aligned_cols=23 Identities=26% Similarity=0.546 Sum_probs=20.9
Q ss_pred EEEECCCCCcHHHHHHHHHHHhc
Q 021362 110 VGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 110 v~l~GpNGsGKSTLlk~l~gl~~ 132 (313)
+.|+|++||||||+.+.|+-.+.
T Consensus 5 Iil~G~~GsGKSTia~~LA~~Lg 27 (170)
T d1e6ca_ 5 IFMVGARGCGMTTVGRELARALG 27 (170)
T ss_dssp EEEESCTTSSHHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHhC
Confidence 56899999999999999998885
|
| >d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Archaeon Acidianus ambivalens [TaxId: 2283]
Probab=96.91 E-value=0.00049 Score=57.45 Aligned_cols=59 Identities=20% Similarity=0.262 Sum_probs=36.1
Q ss_pred CCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCceeecCCCCCCCeEEEEecCCCCCCcccCCcccChHHHHHhcCC
Q 021362 105 NVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGA 182 (313)
Q Consensus 105 ~~Geiv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~i~~~g~~~~~~i~~v~qd~~~~~~~~ltv~e~~~~~~~~~~~ 182 (313)
+...++.++||+|+||||.+--|+..+.. ..++++++.-|.|. .-..|.+.......+.
T Consensus 10 k~p~vi~lvGptGvGKTTTiAKLA~~~~~--------------~g~kV~lit~Dt~R-----~ga~eQL~~~a~~l~v 68 (211)
T d1j8yf2 10 KIPYVIMLVGVQGTGKATTAGKLAYFYKK--------------KGFKVGLVGADVYR-----PAALEQLQQLGQQIGV 68 (211)
T ss_dssp SSSEEEEEECSCCC----HHHHHHHHHHH--------------TTCCEEEEECCCSS-----HHHHHHHHHHHHHHTC
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHH--------------CCCceEEEEeeccc-----cchhHHHHHhccccCc
Confidence 45679999999999999998888876651 23458888888552 2234555544444443
|
| >d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=96.91 E-value=0.00025 Score=56.29 Aligned_cols=23 Identities=35% Similarity=0.657 Sum_probs=20.6
Q ss_pred EEEECCCCCcHHHHHHHHHHHhc
Q 021362 110 VGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 110 v~l~GpNGsGKSTLlk~l~gl~~ 132 (313)
+.|+|++||||||+.+.|+..+.
T Consensus 4 IvliG~~G~GKSTig~~La~~l~ 26 (165)
T d2iyva1 4 AVLVGLPGSGKSTIGRRLAKALG 26 (165)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHhC
Confidence 45779999999999999999885
|
| >d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=96.90 E-value=0.00028 Score=56.48 Aligned_cols=23 Identities=43% Similarity=0.615 Sum_probs=21.1
Q ss_pred EEEECCCCCcHHHHHHHHHHHhc
Q 021362 110 VGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 110 v~l~GpNGsGKSTLlk~l~gl~~ 132 (313)
+.|+||.||||||+.+.|+..+.
T Consensus 3 I~i~G~pGSGKsT~a~~La~~~~ 25 (182)
T d1zina1 3 LVLMGLPGAGKGTQAEKIVAAYG 25 (182)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHHHHC
Confidence 67999999999999999998875
|
| >d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Maize (Zea mays) [TaxId: 4577]
Probab=96.90 E-value=0.0002 Score=58.12 Aligned_cols=24 Identities=25% Similarity=0.425 Sum_probs=21.6
Q ss_pred EEEEECCCCCcHHHHHHHHHHHhc
Q 021362 109 IVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 109 iv~l~GpNGsGKSTLlk~l~gl~~ 132 (313)
.+.|+||.||||||+.+.|+--+.
T Consensus 5 ~I~i~GppGsGKsT~a~~La~~~~ 28 (189)
T d1zaka1 5 KVMISGAPASGKGTQCELIKTKYQ 28 (189)
T ss_dssp CEEEEESTTSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHC
Confidence 477999999999999999998774
|
| >d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Streptococcus pneumoniae [TaxId: 1313]
Probab=96.87 E-value=0.00029 Score=58.30 Aligned_cols=25 Identities=28% Similarity=0.542 Sum_probs=22.7
Q ss_pred cEEEEECCCCCcHHHHHHHHHHHhc
Q 021362 108 HIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 108 eiv~l~GpNGsGKSTLlk~l~gl~~ 132 (313)
-+++|.||+||||||+.+.|+.-+.
T Consensus 4 i~IaIdGp~GsGKgT~ak~La~~lg 28 (223)
T d1q3ta_ 4 IQIAIDGPASSGKSTVAKIIAKDFG 28 (223)
T ss_dssp CEEEEECSSCSSHHHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3678999999999999999999885
|
| >d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: LAO/AO transport system kinase ArgK species: Escherichia coli [TaxId: 562]
Probab=96.87 E-value=0.00036 Score=62.21 Aligned_cols=37 Identities=27% Similarity=0.332 Sum_probs=28.8
Q ss_pred cccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhc
Q 021362 96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 96 ~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~ 132 (313)
+|+.+.-.-.+.-++||.||+|||||||++.|...+.
T Consensus 43 ll~~~~~~~~~~~~IgitG~pGaGKSTLi~~l~~~~~ 79 (327)
T d2p67a1 43 LLDAIMPYCGNTLRLGVTGTPGAGKSTFLEAFGMLLI 79 (327)
T ss_dssp HHHHHGGGCSCSEEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred HHHHhhhccCCceEEEeeCCCCCCHHHHHHHHHHHHH
Confidence 3444333345678999999999999999999998774
|
| >d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=96.86 E-value=0.00023 Score=56.73 Aligned_cols=22 Identities=32% Similarity=0.661 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHHHH
Q 021362 109 IVGLAGPPGAGKSTLAAEVVRR 130 (313)
Q Consensus 109 iv~l~GpNGsGKSTLlk~l~gl 130 (313)
+|+|+|..|+|||||++.|.|.
T Consensus 7 ~I~iiG~~nvGKSSLin~L~~~ 28 (179)
T d1egaa1 7 FIAIVGRPNVGKSTLLNKLLGQ 28 (179)
T ss_dssp EEEEECSSSSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999984
|
| >d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.86 E-value=0.00028 Score=57.08 Aligned_cols=29 Identities=14% Similarity=0.243 Sum_probs=26.1
Q ss_pred ccCCCcEEEEECCCCCcHHHHHHHHHHHh
Q 021362 103 NVNVKHIVGLAGPPGAGKSTLAAEVVRRI 131 (313)
Q Consensus 103 ~i~~Geiv~l~GpNGsGKSTLlk~l~gl~ 131 (313)
-+.+|+++.|.||+|+|||||+..++...
T Consensus 19 Gi~~G~v~~i~G~~GsGKT~l~l~la~~~ 47 (242)
T d1n0wa_ 19 GIETGSITEMFGEFRTGKTQICHTLAVTC 47 (242)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHHHT
T ss_pred CCcCCEEEEEEeCCCCCHHHHHHHHHHHH
Confidence 47899999999999999999998888755
|
| >d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=96.86 E-value=0.00022 Score=56.73 Aligned_cols=23 Identities=39% Similarity=0.590 Sum_probs=19.8
Q ss_pred EEEEECCCCCcHHHHHHHHHHHh
Q 021362 109 IVGLAGPPGAGKSTLAAEVVRRI 131 (313)
Q Consensus 109 iv~l~GpNGsGKSTLlk~l~gl~ 131 (313)
.|+|+|+.|+|||||++.|+|..
T Consensus 2 ~V~liG~~n~GKSsLi~~L~~~~ 24 (171)
T d1mkya1 2 TVLIVGRPNVGKSTLFNKLVKKK 24 (171)
T ss_dssp EEEEECCTTSSHHHHHHHHHC--
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999998854
|
| >d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein engB species: Pyrococcus horikoshii [TaxId: 53953]
Probab=96.86 E-value=0.00017 Score=57.83 Aligned_cols=22 Identities=32% Similarity=0.431 Sum_probs=20.0
Q ss_pred EEEEECCCCCcHHHHHHHHHHH
Q 021362 109 IVGLAGPPGAGKSTLAAEVVRR 130 (313)
Q Consensus 109 iv~l~GpNGsGKSTLlk~l~gl 130 (313)
-|+|+|++|+|||||++.|.|.
T Consensus 2 ~I~lvG~~nvGKSsLin~l~~~ 23 (184)
T d2cxxa1 2 TIIFAGRSNVGKSTLIYRLTGK 23 (184)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 3789999999999999999884
|
| >d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.85 E-value=0.00028 Score=54.61 Aligned_cols=23 Identities=26% Similarity=0.205 Sum_probs=20.1
Q ss_pred EEEEECCCCCcHHHHHHHHHHHh
Q 021362 109 IVGLAGPPGAGKSTLAAEVVRRI 131 (313)
Q Consensus 109 iv~l~GpNGsGKSTLlk~l~gl~ 131 (313)
-++|+|++|+|||||++.+.+-.
T Consensus 2 KI~liG~~nvGKSSLln~l~~~~ 24 (166)
T d2qtvb1 2 KLLFLGLDNAGKTTLLHMLKNDR 24 (166)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 35799999999999999998853
|
| >d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Thermus thermophilus [TaxId: 274]
Probab=96.84 E-value=0.00024 Score=57.64 Aligned_cols=72 Identities=19% Similarity=0.299 Sum_probs=46.8
Q ss_pred ceEEEEcCCccccChhhHHHHHhhccceEEEEcChHHHHHHHhhcccccCCchHHHHHHHHhcCCchhHHhhhcccCccE
Q 021362 227 HKVVIVDGNYLFLDGGVWKDVSSMFDEKWFIEVDLDTAMQRVLKRHISTGKPPDVAKWRIEYNDRPNAELIMKSKKNADL 306 (313)
Q Consensus 227 ar~Li~d~~~lllDE~~~~~l~~l~~~~i~vtHd~~~~~~rv~griv~~G~~~ev~~~~~~~~~~~~~~~i~~~~~~ad~ 306 (313)
...++.+.++++-. .+...++..|+|+.+.+...+|++.| +|...+.+..+. ....+..+. ...||+
T Consensus 101 ~~~vi~e~~~~~~~-----~~~~~~d~vI~v~a~~e~r~~Rl~~R---~~~~~~~~~~~~-~~q~~~~~~----~~~aD~ 167 (191)
T d1uf9a_ 101 APLVFLEIPLLFEK-----GWEGRLHGTLLVAAPLEERVRRVMAR---SGLSREEVLARE-RAQMPEEEK----RKRATW 167 (191)
T ss_dssp CSEEEEECTTTTTT-----TCGGGSSEEEEECCCHHHHHHHHHTT---TCCTTHHHHHHH-TTSCCHHHH----HHHCSE
T ss_pred cceEEEEeeccccc-----cccccceeEEEEecchhhHHHHHHhc---ccchHHHHHHHH-HhCCCHHHH----HHhCCE
Confidence 45666776654432 34556677899999999988887765 365666555543 344454433 467999
Q ss_pred EeecC
Q 021362 307 VIKSI 311 (313)
Q Consensus 307 ii~~~ 311 (313)
||.|.
T Consensus 168 vI~N~ 172 (191)
T d1uf9a_ 168 VLENT 172 (191)
T ss_dssp EECCS
T ss_pred EEECC
Confidence 99875
|
| >d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus globisporus [TaxId: 1459]
Probab=96.84 E-value=0.00033 Score=56.36 Aligned_cols=24 Identities=42% Similarity=0.613 Sum_probs=21.7
Q ss_pred EEEEECCCCCcHHHHHHHHHHHhc
Q 021362 109 IVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 109 iv~l~GpNGsGKSTLlk~l~gl~~ 132 (313)
.+.|+||.||||||+.+.|+.-+.
T Consensus 2 ~I~i~G~pGSGKsT~a~~La~~~g 25 (182)
T d1s3ga1 2 NIVLMGLPGAGKGTQADRIVEKYG 25 (182)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHC
Confidence 467999999999999999998875
|
| >d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable tRNA modification GTPase TrmE (MnmE), G domain species: Escherichia coli [TaxId: 562]
Probab=96.83 E-value=0.00025 Score=55.54 Aligned_cols=25 Identities=40% Similarity=0.478 Sum_probs=22.1
Q ss_pred CcEEEEECCCCCcHHHHHHHHHHHh
Q 021362 107 KHIVGLAGPPGAGKSTLAAEVVRRI 131 (313)
Q Consensus 107 Geiv~l~GpNGsGKSTLlk~l~gl~ 131 (313)
|--++|+|+.|+|||||++.|.|.-
T Consensus 1 ~~kI~lvG~~nvGKSsLin~l~~~~ 25 (161)
T d2gj8a1 1 GMKVVIAGRPNAGKSSLLNALAGRE 25 (161)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4568999999999999999999864
|
| >d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=96.83 E-value=0.0003 Score=56.52 Aligned_cols=25 Identities=32% Similarity=0.492 Sum_probs=21.8
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHHH
Q 021362 106 VKHIVGLAGPPGAGKSTLAAEVVRR 130 (313)
Q Consensus 106 ~Geiv~l~GpNGsGKSTLlk~l~gl 130 (313)
.+--|||+|+.|+|||||++.|.|-
T Consensus 7 ~~~kV~iiG~~~~GKSTLin~l~~~ 31 (186)
T d1mkya2 7 DAIKVAIVGRPNVGKSTLFNAILNK 31 (186)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHTS
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCC
Confidence 3456899999999999999999874
|
| >d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF1 [TaxId: 9606]
Probab=96.82 E-value=0.0003 Score=54.53 Aligned_cols=22 Identities=23% Similarity=0.255 Sum_probs=19.7
Q ss_pred EEEECCCCCcHHHHHHHHHHHh
Q 021362 110 VGLAGPPGAGKSTLAAEVVRRI 131 (313)
Q Consensus 110 v~l~GpNGsGKSTLlk~l~gl~ 131 (313)
+.|+|++|+|||||++.+.+-.
T Consensus 3 ivlvG~~~vGKSsLi~~l~~~~ 24 (160)
T d1r8sa_ 3 ILMVGLDAAGKTTILYKLKLGE 24 (160)
T ss_dssp EEEECSTTSSHHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHhcCC
Confidence 6799999999999999998754
|
| >d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.82 E-value=0.00031 Score=57.32 Aligned_cols=23 Identities=26% Similarity=0.442 Sum_probs=21.0
Q ss_pred EEEEECCCCCcHHHHHHHHHHHh
Q 021362 109 IVGLAGPPGAGKSTLAAEVVRRI 131 (313)
Q Consensus 109 iv~l~GpNGsGKSTLlk~l~gl~ 131 (313)
.|+|+|+.|||||||++.|.|-.
T Consensus 5 ~V~lvG~~n~GKTSLln~l~~~~ 27 (209)
T d1nrjb_ 5 SIIIAGPQNSGKTSLLTLLTTDS 27 (209)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999999854
|
| >d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL1 [TaxId: 9606]
Probab=96.80 E-value=0.00032 Score=54.75 Aligned_cols=23 Identities=26% Similarity=0.273 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHHHHh
Q 021362 109 IVGLAGPPGAGKSTLAAEVVRRI 131 (313)
Q Consensus 109 iv~l~GpNGsGKSTLlk~l~gl~ 131 (313)
-++|+|.+|+|||||++.+.+-.
T Consensus 7 kI~ivG~~~vGKSSLi~~~~~~~ 29 (169)
T d1upta_ 7 RILILGLDGAGKTTILYRLQVGE 29 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 38899999999999999998754
|
| >d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Thermus thermophilus [TaxId: 274]
Probab=96.80 E-value=0.00029 Score=56.51 Aligned_cols=22 Identities=36% Similarity=0.613 Sum_probs=20.8
Q ss_pred EEEEECCCCCcHHHHHHHHHHH
Q 021362 109 IVGLAGPPGAGKSTLAAEVVRR 130 (313)
Q Consensus 109 iv~l~GpNGsGKSTLlk~l~gl 130 (313)
+|+|+|..|+|||||++.|.|.
T Consensus 7 ~I~lvG~~~~GKSSLin~l~~~ 28 (178)
T d1wf3a1 7 FVAIVGKPNVGKSTLLNNLLGV 28 (178)
T ss_dssp EEEEECSTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 7999999999999999999885
|
| >d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxyribonucleoside kinase species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=96.79 E-value=0.00021 Score=58.15 Aligned_cols=28 Identities=25% Similarity=0.285 Sum_probs=24.6
Q ss_pred CCCcEEEEECCCCCcHHHHHHHHHHHhc
Q 021362 105 NVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 105 ~~Geiv~l~GpNGsGKSTLlk~l~gl~~ 132 (313)
.++-+++|-|+.||||||+++.|...+.
T Consensus 7 ~kp~~I~ieG~~GsGKTTl~~~L~~~l~ 34 (197)
T d2vp4a1 7 TQPFTVLIEGNIGSGKTTYLNHFEKYKN 34 (197)
T ss_dssp CCCEEEEEECSTTSCHHHHHHTTGGGTT
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4567999999999999999999988763
|
| >d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Bacillus subtilis [TaxId: 1423]
Probab=96.79 E-value=0.00013 Score=58.95 Aligned_cols=22 Identities=50% Similarity=0.622 Sum_probs=19.6
Q ss_pred EEEECCCCCcHHHHHHHHHHHh
Q 021362 110 VGLAGPPGAGKSTLAAEVVRRI 131 (313)
Q Consensus 110 v~l~GpNGsGKSTLlk~l~gl~ 131 (313)
|||+|+.++|||||++.|+|-.
T Consensus 4 VaiiG~~nvGKSSLin~L~~~~ 25 (185)
T d1lnza2 4 VGLVGFPSVGKSTLLSVVSSAK 25 (185)
T ss_dssp EEEESSTTSSHHHHHHHSEEEC
T ss_pred EEEECCCCCCHHHHHHHHhCCC
Confidence 7999999999999999987643
|
| >d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=96.77 E-value=0.00045 Score=57.44 Aligned_cols=30 Identities=30% Similarity=0.340 Sum_probs=26.2
Q ss_pred cccCCCcEEEEECCCCCcHHHHHHHHHHHh
Q 021362 102 SNVNVKHIVGLAGPPGAGKSTLAAEVVRRI 131 (313)
Q Consensus 102 l~i~~Geiv~l~GpNGsGKSTLlk~l~gl~ 131 (313)
+.-++|.++-|.|.+|||||||.+.|.-.+
T Consensus 19 ~~~~kg~vIwltGlsGsGKTTia~~L~~~l 48 (208)
T d1m7ga_ 19 LRNQRGLTIWLTGLSASGKSTLAVELEHQL 48 (208)
T ss_dssp HHTSSCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred HhCCCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 344789999999999999999999998655
|
| >d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Escherichia coli [TaxId: 562]
Probab=96.75 E-value=0.00042 Score=57.13 Aligned_cols=27 Identities=30% Similarity=0.420 Sum_probs=25.1
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHHHhc
Q 021362 106 VKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 106 ~Geiv~l~GpNGsGKSTLlk~l~gl~~ 132 (313)
+|.+++|-|+.||||||+++.|...+.
T Consensus 1 rgkfIviEG~dGsGKsT~~~~L~~~L~ 27 (210)
T d4tmka_ 1 RSKYIVIEGLEGAGKTTARNVVVETLE 27 (210)
T ss_dssp CCCEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 588999999999999999999999875
|
| >d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: DNA repair protein MutS, the C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=96.74 E-value=0.0004 Score=58.91 Aligned_cols=35 Identities=20% Similarity=0.238 Sum_probs=26.3
Q ss_pred cccccccccCCCcEEEEECCCCCcHHHHHHHHHHHh
Q 021362 96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRI 131 (313)
Q Consensus 96 ~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~ 131 (313)
+=+|++++- .+.++.|.|||.+||||++|.++-..
T Consensus 31 VpNdi~l~~-~~~~~iiTGpN~~GKSt~lk~i~l~~ 65 (234)
T d1wb9a2 31 IANPLNLSP-QRRMLIITGPNMGGKSTYMRQTALIA 65 (234)
T ss_dssp CCEEEEECS-SSCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred cceeEEECC-CceEEEEeccCchhhHHHHHHHHHHH
Confidence 445555553 34689999999999999999986543
|
| >d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=96.73 E-value=0.00043 Score=55.59 Aligned_cols=24 Identities=46% Similarity=0.739 Sum_probs=21.4
Q ss_pred EEEEECCCCCcHHHHHHHHHHHhc
Q 021362 109 IVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 109 iv~l~GpNGsGKSTLlk~l~gl~~ 132 (313)
.+.|+||.||||||+.+.|+.-+.
T Consensus 2 ~I~i~G~pGsGKsT~a~~La~~~g 25 (181)
T d2cdna1 2 RVLLLGPPGAGKGTQAVKLAEKLG 25 (181)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHC
Confidence 367999999999999999998774
|
| >d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.73 E-value=0.00045 Score=57.37 Aligned_cols=28 Identities=29% Similarity=0.348 Sum_probs=25.7
Q ss_pred CCCcEEEEECCCCCcHHHHHHHHHHHhc
Q 021362 105 NVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 105 ~~Geiv~l~GpNGsGKSTLlk~l~gl~~ 132 (313)
++|-+++|-|+-||||||+++.|...+.
T Consensus 1 ~rG~lI~ieG~dGsGKsT~~~~L~~~L~ 28 (209)
T d1nn5a_ 1 RRGALIVLEGVDRAGKSTQSRKLVEALC 28 (209)
T ss_dssp CCCCEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CCeeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4789999999999999999999999875
|
| >d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Escherichia coli [TaxId: 562]
Probab=96.66 E-value=0.00042 Score=55.55 Aligned_cols=24 Identities=33% Similarity=0.411 Sum_probs=21.2
Q ss_pred EEEEECCCCCcHHHHHHHHHHHhc
Q 021362 109 IVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 109 iv~l~GpNGsGKSTLlk~l~gl~~ 132 (313)
.+.|+||.||||||..+.|+-.+.
T Consensus 2 ~I~i~G~pGSGKsT~~~~La~~~~ 25 (179)
T d1e4va1 2 RIILLGAPVAGKGTQAQFIMEKYG 25 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 367899999999999999998774
|
| >d1ewqa2 c.37.1.12 (A:542-765) DNA repair protein MutS, the C-terminal domain {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: DNA repair protein MutS, the C-terminal domain species: Thermus aquaticus [TaxId: 271]
Probab=96.61 E-value=0.00052 Score=57.82 Aligned_cols=25 Identities=32% Similarity=0.394 Sum_probs=21.1
Q ss_pred CcEEEEECCCCCcHHHHHHHHHHHh
Q 021362 107 KHIVGLAGPPGAGKSTLAAEVVRRI 131 (313)
Q Consensus 107 Geiv~l~GpNGsGKSTLlk~l~gl~ 131 (313)
++++.|.|||.+||||++|.++=..
T Consensus 35 ~~~~iiTGpN~~GKSt~lk~i~l~~ 59 (224)
T d1ewqa2 35 HELVLITGPNMAGKSTFLRQTALIA 59 (224)
T ss_dssp SCEEEEESCSSSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCccccchhhhhhHHHH
Confidence 3588999999999999999876543
|
| >d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Thermus thermophilus [TaxId: 274]
Probab=96.60 E-value=0.00022 Score=57.21 Aligned_cols=22 Identities=55% Similarity=0.761 Sum_probs=20.1
Q ss_pred EEEECCCCCcHHHHHHHHHHHh
Q 021362 110 VGLAGPPGAGKSTLAAEVVRRI 131 (313)
Q Consensus 110 v~l~GpNGsGKSTLlk~l~gl~ 131 (313)
|||+|..|+|||||++.|.|..
T Consensus 4 VaivG~~nvGKSTLin~L~~~~ 25 (180)
T d1udxa2 4 VGLVGYPNAGKSSLLAAMTRAH 25 (180)
T ss_dssp EEEECCGGGCHHHHHHHHCSSC
T ss_pred EEEECCCCCCHHHHHHHHhCCC
Confidence 7999999999999999998754
|
| >d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]
Probab=96.58 E-value=0.00052 Score=55.93 Aligned_cols=25 Identities=24% Similarity=0.614 Sum_probs=21.9
Q ss_pred cEEEEECCCCCcHHHHHHHHHHHhc
Q 021362 108 HIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 108 eiv~l~GpNGsGKSTLlk~l~gl~~ 132 (313)
-.+.|+||.||||||+.+.|+.-+.
T Consensus 7 mrIiliG~PGSGKtT~a~~La~~~g 31 (189)
T d2ak3a1 7 LRAAIMGAPGSGKGTVSSRITKHFE 31 (189)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHBC
T ss_pred eeEEEECCCCCCHHHHHHHHHHHHC
Confidence 3578999999999999999998764
|
| >d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=96.57 E-value=0.00032 Score=55.68 Aligned_cols=25 Identities=24% Similarity=0.178 Sum_probs=20.6
Q ss_pred CcEEEEECCCCCcHHHHHHHHHHHh
Q 021362 107 KHIVGLAGPPGAGKSTLAAEVVRRI 131 (313)
Q Consensus 107 Geiv~l~GpNGsGKSTLlk~l~gl~ 131 (313)
.-.++|+|++|||||||++.+.+-.
T Consensus 13 ~~kI~lvG~~~vGKTsLl~~l~~~~ 37 (186)
T d1f6ba_ 13 TGKLVFLGLDNAGKTTLLHMLKDDR 37 (186)
T ss_dssp CEEEEEEEETTSSHHHHHHHHSCC-
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3467899999999999999987643
|
| >d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.55 E-value=0.00073 Score=54.25 Aligned_cols=24 Identities=46% Similarity=0.725 Sum_probs=21.2
Q ss_pred EEEEECCCCCcHHHHHHHHHHHhc
Q 021362 109 IVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 109 iv~l~GpNGsGKSTLlk~l~gl~~ 132 (313)
.+.|+||.||||||+.+.|+..+.
T Consensus 4 rIvl~G~pGSGKtT~a~~La~~~g 27 (180)
T d1akya1 4 RMVLIGPPGAGKGTQAPNLQERFH 27 (180)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 356889999999999999998874
|
| >d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Haemophilus influenzae [TaxId: 727]
Probab=96.46 E-value=0.00069 Score=55.80 Aligned_cols=72 Identities=17% Similarity=0.143 Sum_probs=45.3
Q ss_pred ceEEEEcCCccccChhhHHHHHhhccceEEEEcChHHHHHHHhhcccccCCchHHHHHHHHhcCCchhHHhhhcccCccE
Q 021362 227 HKVVIVDGNYLFLDGGVWKDVSSMFDEKWFIEVDLDTAMQRVLKRHISTGKPPDVAKWRIEYNDRPNAELIMKSKKNADL 306 (313)
Q Consensus 227 ar~Li~d~~~lllDE~~~~~l~~l~~~~i~vtHd~~~~~~rv~griv~~G~~~ev~~~~~~~~~~~~~~~i~~~~~~ad~ 306 (313)
++.++.|.++++= ..+...++..|+|+.+.+....|+..| +|.+.+.+..++.. ..+..+. ...||+
T Consensus 105 ~~~vv~e~~ll~e-----~~~~~~~d~ii~v~~~~~~r~~R~~~R---~~~s~e~~~~~~~~-Q~~~~~k----~~~aD~ 171 (205)
T d1jjva_ 105 APYTLFVVPLLIE-----NKLTALCDRILVVDVSPQTQLARSAQR---DNNNFEQIQRIMNS-QVSQQER----LKWADD 171 (205)
T ss_dssp SSEEEEECTTTTT-----TTCGGGCSEEEEEECCHHHHHHHHC--------CHHHHHHHHHH-SCCHHHH----HHHCSE
T ss_pred CCeEEEEeccccc-----cchhhhhhheeeecchHHHHHHHHHhc---CCchHHHHHHHHHh-CCCHHHH----HHhCCE
Confidence 5567778776642 234556778899999999988887644 36566666665443 3343333 467999
Q ss_pred EeecC
Q 021362 307 VIKSI 311 (313)
Q Consensus 307 ii~~~ 311 (313)
||.|.
T Consensus 172 vI~N~ 176 (205)
T d1jjva_ 172 VINND 176 (205)
T ss_dssp EEECC
T ss_pred EEECC
Confidence 99875
|
| >d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Metallochaperone MeaB species: Methylobacterium extorquens [TaxId: 408]
Probab=96.45 E-value=0.0012 Score=58.51 Aligned_cols=30 Identities=30% Similarity=0.424 Sum_probs=25.3
Q ss_pred ccCCCcEEEEECCCCCcHHHHHHHHHHHhc
Q 021362 103 NVNVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 103 ~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~ 132 (313)
.-.+.-++||.||.|||||||+..|...+.
T Consensus 47 ~~~~~~~igitG~pGaGKSTli~~l~~~~~ 76 (323)
T d2qm8a1 47 QTGRAIRVGITGVPGVGKSTTIDALGSLLT 76 (323)
T ss_dssp GCCCSEEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred ccCCceEEeeeCCCCCCHHHHHHHHHHHHh
Confidence 345667899999999999999999987653
|
| >d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.45 E-value=0.00087 Score=55.69 Aligned_cols=28 Identities=14% Similarity=0.296 Sum_probs=25.7
Q ss_pred CCCcEEEEECCCCCcHHHHHHHHHHHhc
Q 021362 105 NVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 105 ~~Geiv~l~GpNGsGKSTLlk~l~gl~~ 132 (313)
.+|.+++|-|+-||||||+++.|+..+.
T Consensus 1 ~kGk~I~iEG~DGsGKST~~~~L~~~L~ 28 (214)
T d1tmka_ 1 GRGKLILIEGLDRTGKTTQCNILYKKLQ 28 (214)
T ss_dssp CCCCEEEEEESTTSSHHHHHHHHHHHTT
T ss_pred CCeEEEEEECCCCCcHHHHHHHHHHHHH
Confidence 3799999999999999999999998875
|
| >d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Mouse (Mus musculus) [TaxId: 10090]
Probab=96.43 E-value=0.00077 Score=55.18 Aligned_cols=22 Identities=23% Similarity=0.264 Sum_probs=20.0
Q ss_pred EEEEECCCCCcHHHHHHHHHHH
Q 021362 109 IVGLAGPPGAGKSTLAAEVVRR 130 (313)
Q Consensus 109 iv~l~GpNGsGKSTLlk~l~gl 130 (313)
-|+|+|+.|+|||||++.+.+-
T Consensus 2 ~V~ivG~~~~GKTsLl~~l~~~ 23 (207)
T d2fh5b1 2 AVLFVGLCDSGKTLLFVRLLTG 23 (207)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4789999999999999999874
|
| >d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL2 [TaxId: 10090]
Probab=96.43 E-value=0.00055 Score=53.87 Aligned_cols=23 Identities=22% Similarity=0.186 Sum_probs=20.1
Q ss_pred EEEEECCCCCcHHHHHHHHHHHh
Q 021362 109 IVGLAGPPGAGKSTLAAEVVRRI 131 (313)
Q Consensus 109 iv~l~GpNGsGKSTLlk~l~gl~ 131 (313)
-++|+|+.|+|||||++.+.+-.
T Consensus 4 ki~ivG~~~~GKTsLi~~l~~~~ 26 (165)
T d1ksha_ 4 RLLMLGLDNAGKTTILKKFNGED 26 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHTTCC
T ss_pred EEEEECCCCCCHHHHHHHHcCCC
Confidence 47899999999999999987743
|
| >d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxycytidine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.41 E-value=0.0004 Score=58.00 Aligned_cols=27 Identities=22% Similarity=0.242 Sum_probs=24.2
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHHHhc
Q 021362 106 VKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 106 ~Geiv~l~GpNGsGKSTLlk~l~gl~~ 132 (313)
++.+++|-|+-||||||+++.|+..+.
T Consensus 1 ~~k~I~ieG~dGsGKST~~~~L~~~l~ 27 (241)
T d1p5zb_ 1 RIKKISIEGNIAAGKSTFVNILKQLCE 27 (241)
T ss_dssp CCEEEEEECSTTSSHHHHHTTTGGGCT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHh
Confidence 467899999999999999999998773
|
| >d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=96.40 E-value=0.0009 Score=55.73 Aligned_cols=24 Identities=42% Similarity=0.675 Sum_probs=21.4
Q ss_pred EEEEECCCCCcHHHHHHHHHHHhc
Q 021362 109 IVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 109 iv~l~GpNGsGKSTLlk~l~gl~~ 132 (313)
.+.|.||+|+|||||+++|+..+.
T Consensus 47 ~lll~Gp~G~GKTtla~~iak~l~ 70 (231)
T d1iqpa2 47 HLLFAGPPGVGKTTAALALARELF 70 (231)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHHHHH
Confidence 477999999999999999998764
|
| >d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.38 E-value=0.0011 Score=55.79 Aligned_cols=25 Identities=40% Similarity=0.611 Sum_probs=22.7
Q ss_pred cEEEEECCCCCcHHHHHHHHHHHhc
Q 021362 108 HIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 108 eiv~l~GpNGsGKSTLlk~l~gl~~ 132 (313)
..+.|.||+|+||||++++|+..+.
T Consensus 53 ~~lll~GPpG~GKTt~a~~la~~~~ 77 (253)
T d1sxja2 53 RAAMLYGPPGIGKTTAAHLVAQELG 77 (253)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHH
Confidence 4688999999999999999999875
|
| >d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Escherichia coli [TaxId: 562]
Probab=96.37 E-value=0.00093 Score=55.15 Aligned_cols=73 Identities=14% Similarity=0.113 Sum_probs=43.6
Q ss_pred ceEEEEcCCccccChhhHHHHHhhccceEEEEcChHHHHHHHhhcccccCCchHHHHHHHHhcCCchhHHhhhcccCccE
Q 021362 227 HKVVIVDGNYLFLDGGVWKDVSSMFDEKWFIEVDLDTAMQRVLKRHISTGKPPDVAKWRIEYNDRPNAELIMKSKKNADL 306 (313)
Q Consensus 227 ar~Li~d~~~lllDE~~~~~l~~l~~~~i~vtHd~~~~~~rv~griv~~G~~~ev~~~~~~~~~~~~~~~i~~~~~~ad~ 306 (313)
.+.++.+.++++- ..+...++..|+|.-+.+....|+..| +|...+....++. .-.+..+. ...||+
T Consensus 106 ~~~~~~e~~ll~e-----~~~~~~~~~iI~V~a~~e~r~~R~~~R---~~~~~~~~~~~~~-~Q~~~~~k----~~~aD~ 172 (208)
T d1vhta_ 106 SPYVLWVVPLLVE-----NSLYKKANRVLVVDVSPETQLKRTMQR---DDVTREHVEQILA-AQATREAR----LAVADD 172 (208)
T ss_dssp SSEEEEECTTTTT-----TTGGGGCSEEEEEECCHHHHHHHHHHH---HTCCHHHHHHHHH-HSCCHHHH----HHHCSE
T ss_pred cCCcceeeeeccc-----ccccccCCEEEEEeCCHHHHHHHHHHh---hhhhHHHHHHHHH-hCCCHHHH----HHhCCE
Confidence 4456667665542 133455667889999999888787755 2334444444333 22333332 577899
Q ss_pred EeecCC
Q 021362 307 VIKSID 312 (313)
Q Consensus 307 ii~~~~ 312 (313)
||+|..
T Consensus 173 vI~N~~ 178 (208)
T d1vhta_ 173 VIDNNG 178 (208)
T ss_dssp EEECSS
T ss_pred EEECCC
Confidence 998863
|
| >d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL8A [TaxId: 9606]
Probab=96.33 E-value=0.00099 Score=52.42 Aligned_cols=22 Identities=23% Similarity=0.289 Sum_probs=19.1
Q ss_pred EEEEECCCCCcHHHHHHHHHHH
Q 021362 109 IVGLAGPPGAGKSTLAAEVVRR 130 (313)
Q Consensus 109 iv~l~GpNGsGKSTLlk~l~gl 130 (313)
-++|+|++|+|||||++.+.+-
T Consensus 4 ki~i~G~~~~GKTsLl~~l~~~ 25 (164)
T d1zd9a1 4 ELTLVGLQYSGKTTFVNVIASG 25 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 3679999999999999988763
|
| >d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: TrmE GTPase domain species: Thermotoga maritima [TaxId: 2336]
Probab=96.33 E-value=0.00027 Score=55.28 Aligned_cols=22 Identities=32% Similarity=0.504 Sum_probs=20.7
Q ss_pred EEEECCCCCcHHHHHHHHHHHh
Q 021362 110 VGLAGPPGAGKSTLAAEVVRRI 131 (313)
Q Consensus 110 v~l~GpNGsGKSTLlk~l~gl~ 131 (313)
++|+|..|+|||||++.|.|..
T Consensus 3 I~liG~~n~GKSSLin~l~g~~ 24 (160)
T d1xzpa2 3 MVIVGKPNVGKSTLLNRLLNED 24 (160)
T ss_dssp EEEECCHHHHTCHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHhCCC
Confidence 7999999999999999999975
|
| >d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermotoga maritima [TaxId: 2336]
Probab=96.32 E-value=0.0012 Score=55.07 Aligned_cols=24 Identities=50% Similarity=0.750 Sum_probs=21.8
Q ss_pred EEEEECCCCCcHHHHHHHHHHHhc
Q 021362 109 IVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 109 iv~l~GpNGsGKSTLlk~l~gl~~ 132 (313)
.+.+.||+|+||||++++|+..+.
T Consensus 37 ~~L~~GPpGtGKT~lA~~la~~~~ 60 (238)
T d1in4a2 37 HVLLAGPPGLGKTTLAHIIASELQ 60 (238)
T ss_dssp CEEEESSTTSSHHHHHHHHHHHHT
T ss_pred eEEEECCCCCcHHHHHHHHHhccC
Confidence 367999999999999999999886
|
| >d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Escherichia coli [TaxId: 562]
Probab=96.31 E-value=0.00029 Score=56.09 Aligned_cols=25 Identities=28% Similarity=0.314 Sum_probs=21.1
Q ss_pred CcEEEEECCCCCcHHHHHHHHHHHh
Q 021362 107 KHIVGLAGPPGAGKSTLAAEVVRRI 131 (313)
Q Consensus 107 Geiv~l~GpNGsGKSTLlk~l~gl~ 131 (313)
.--|+|+|+.++|||||+|.|.|.-
T Consensus 16 ~~~I~lvG~~NvGKSSL~n~L~~~~ 40 (188)
T d1puia_ 16 GIEVAFAGRSNAGKSSALNTLTNQK 40 (188)
T ss_dssp SEEEEEEECTTSSHHHHHTTTCCC-
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3458999999999999999997753
|
| >d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric traffic ATPase, HP0525 species: Helicobacter pylori [TaxId: 210]
Probab=96.28 E-value=0.00063 Score=60.43 Aligned_cols=29 Identities=24% Similarity=0.397 Sum_probs=25.3
Q ss_pred cCCCcEEEEECCCCCcHHHHHHHHHHHhc
Q 021362 104 VNVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 104 i~~Geiv~l~GpNGsGKSTLlk~l~gl~~ 132 (313)
+..|.-+.|.|+.|||||||++.|.+.++
T Consensus 163 v~~~~nili~G~tgSGKTT~l~al~~~i~ 191 (323)
T d1g6oa_ 163 IAIGKNVIVCGGTGSGKTTYIKSIMEFIP 191 (323)
T ss_dssp HHHTCCEEEEESTTSSHHHHHHHHGGGSC
T ss_pred HHhCCCEEEEeeccccchHHHHHHhhhcc
Confidence 45556689999999999999999999885
|
| >d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=96.26 E-value=0.0011 Score=58.17 Aligned_cols=27 Identities=26% Similarity=0.501 Sum_probs=22.9
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHHHhc
Q 021362 106 VKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 106 ~Geiv~l~GpNGsGKSTLlk~l~gl~~ 132 (313)
++.-+.++||+|+|||.|+|.|+..+.
T Consensus 48 ~~~~iLl~GPpG~GKT~lAkalA~~~~ 74 (309)
T d1ofha_ 48 TPKNILMIGPTGVGKTEIARRLAKLAN 74 (309)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCceEEEECCCCCCHHHHHHHHhhccc
Confidence 334556899999999999999999875
|
| >d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL5A [TaxId: 9606]
Probab=96.25 E-value=0.00086 Score=53.03 Aligned_cols=27 Identities=26% Similarity=0.284 Sum_probs=22.2
Q ss_pred CCCcEEEEECCCCCcHHHHHHHHHHHh
Q 021362 105 NVKHIVGLAGPPGAGKSTLAAEVVRRI 131 (313)
Q Consensus 105 ~~Geiv~l~GpNGsGKSTLlk~l~gl~ 131 (313)
++.--+.|+|.+|||||||++.|.+-.
T Consensus 13 ~k~~kI~vvG~~~~GKSsLi~rl~~~~ 39 (177)
T d1zj6a1 13 HQEHKVIIVGLDNAGKTTILYQFSMNE 39 (177)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHHTTS
T ss_pred CCeEEEEEECCCCCCHHHHHHHHhcCC
Confidence 344468899999999999999998753
|
| >d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermus thermophilus [TaxId: 274]
Probab=96.23 E-value=0.0012 Score=55.12 Aligned_cols=24 Identities=42% Similarity=0.681 Sum_probs=21.6
Q ss_pred EEEEECCCCCcHHHHHHHHHHHhc
Q 021362 109 IVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 109 iv~l~GpNGsGKSTLlk~l~gl~~ 132 (313)
-+.+.||.|+|||||++++++.+.
T Consensus 37 ~~Ll~GPpG~GKTtla~~la~~~~ 60 (239)
T d1ixsb2 37 HLLLFGPPGLGKTTLAHVIAHELG 60 (239)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC
Confidence 356899999999999999999875
|
| >d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.23 E-value=0.00089 Score=55.43 Aligned_cols=27 Identities=30% Similarity=0.319 Sum_probs=23.9
Q ss_pred ccCCCcEEEEECCCCCcHHHHHHHHHH
Q 021362 103 NVNVKHIVGLAGPPGAGKSTLAAEVVR 129 (313)
Q Consensus 103 ~i~~Geiv~l~GpNGsGKSTLlk~l~g 129 (313)
-+++|.++-|.||+|||||||+..++-
T Consensus 30 Gi~~G~~~li~G~pGsGKT~l~lq~~~ 56 (251)
T d1szpa2 30 GVETGSITELFGEFRTGKSQLCHTLAV 56 (251)
T ss_dssp SEESSSEEEEEESTTSSHHHHHHHHTT
T ss_pred CCcCCeEEEEEcCCCCCHHHHHHHHHH
Confidence 378999999999999999999977653
|
| >d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: YjeE-like domain: Hypothetical protein HI0065 species: Haemophilus influenzae [TaxId: 727]
Probab=96.21 E-value=0.0015 Score=51.79 Aligned_cols=30 Identities=33% Similarity=0.460 Sum_probs=27.0
Q ss_pred ccCCCcEEEEECCCCCcHHHHHHHHHHHhc
Q 021362 103 NVNVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 103 ~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~ 132 (313)
..++|.++.|-|+=|||||||.|.++.-+.
T Consensus 29 ~~~~g~ii~L~G~LGaGKTtfvr~~~~~lg 58 (158)
T d1htwa_ 29 HTEKAIMVYLNGDLGAGKTTLTRGMLQGIG 58 (158)
T ss_dssp CCSSCEEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred cCCCCeEEEEecCCCccHHHHHHHHHhhcc
Confidence 457899999999999999999999988774
|
| >d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor SelB, N-terminal domain species: Methanococcus maripaludis [TaxId: 39152]
Probab=96.20 E-value=0.00095 Score=53.59 Aligned_cols=22 Identities=27% Similarity=0.406 Sum_probs=20.1
Q ss_pred EEEECCCCCcHHHHHHHHHHHh
Q 021362 110 VGLAGPPGAGKSTLAAEVVRRI 131 (313)
Q Consensus 110 v~l~GpNGsGKSTLlk~l~gl~ 131 (313)
++|+|+..||||||++.|.|.-
T Consensus 8 IaiiG~~naGKSTL~n~L~~~~ 29 (179)
T d1wb1a4 8 LGIFGHIDHGKTTLSKVLTEIA 29 (179)
T ss_dssp EEEEECTTSSHHHHHHHHHTTC
T ss_pred EEEEeCCCCcHHHHHHHHHHhc
Confidence 8999999999999999998743
|
| >d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=96.18 E-value=0.0015 Score=53.20 Aligned_cols=24 Identities=29% Similarity=0.559 Sum_probs=22.1
Q ss_pred EEEEECCCCCcHHHHHHHHHHHhc
Q 021362 109 IVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 109 iv~l~GpNGsGKSTLlk~l~gl~~ 132 (313)
+++|-|.-||||||+++.|...+.
T Consensus 2 lI~ieG~dGsGKST~~~~L~~~l~ 25 (208)
T d1gsia_ 2 LIAIEGVDGAGKRTLVEKLSGAFR 25 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 688999999999999999998874
|
| >d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C2 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.15 E-value=0.0014 Score=54.31 Aligned_cols=22 Identities=27% Similarity=0.655 Sum_probs=20.3
Q ss_pred EEEECCCCCcHHHHHHHHHHHh
Q 021362 110 VGLAGPPGAGKSTLAAEVVRRI 131 (313)
Q Consensus 110 v~l~GpNGsGKSTLlk~l~gl~ 131 (313)
+.|.||+|+|||||+++++..+
T Consensus 36 lll~Gp~G~GKTtl~~~i~~~l 57 (237)
T d1sxjd2 36 MLFYGPPGTGKTSTILALTKEL 57 (237)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCChHHHHHHHHHHH
Confidence 6799999999999999999876
|
| >d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Chloroplast protein translocon GTPase Toc34 species: Garden pea (Pisum sativum) [TaxId: 3888]
Probab=96.14 E-value=0.00099 Score=57.00 Aligned_cols=24 Identities=21% Similarity=0.332 Sum_probs=21.6
Q ss_pred cEEEEECCCCCcHHHHHHHHHHHh
Q 021362 108 HIVGLAGPPGAGKSTLAAEVVRRI 131 (313)
Q Consensus 108 eiv~l~GpNGsGKSTLlk~l~gl~ 131 (313)
--++|+|.+|+|||||+|.|.|..
T Consensus 33 l~I~LvG~tg~GKSSliN~ilg~~ 56 (257)
T d1h65a_ 33 LTILVMGKGGVGKSSTVNSIIGER 56 (257)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTSC
T ss_pred cEEEEECCCCCcHHHHHHHHhCCC
Confidence 368999999999999999999964
|
| >d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein ypt7p species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.13 E-value=0.0015 Score=51.76 Aligned_cols=21 Identities=33% Similarity=0.501 Sum_probs=19.0
Q ss_pred EEEECCCCCcHHHHHHHHHHH
Q 021362 110 VGLAGPPGAGKSTLAAEVVRR 130 (313)
Q Consensus 110 v~l~GpNGsGKSTLlk~l~gl 130 (313)
++|+|+.|+|||||++.+.+-
T Consensus 5 i~~vG~~~vGKSsLi~~~~~~ 25 (175)
T d1ky3a_ 5 VIILGDSGVGKTSLMHRYVND 25 (175)
T ss_dssp EEEECCTTSSHHHHHHHHHHS
T ss_pred EEEECCCCcCHHHHHHHHHcC
Confidence 789999999999999998763
|
| >d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Meiotic recombination protein DMC1/LIM15 homolog species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.11 E-value=0.0018 Score=53.95 Aligned_cols=29 Identities=17% Similarity=0.198 Sum_probs=25.7
Q ss_pred ccCCCcEEEEECCCCCcHHHHHHHHHHHh
Q 021362 103 NVNVKHIVGLAGPPGAGKSTLAAEVVRRI 131 (313)
Q Consensus 103 ~i~~Geiv~l~GpNGsGKSTLlk~l~gl~ 131 (313)
-+.+|.++.|.||+|||||||.-.++...
T Consensus 33 Gip~G~~~~i~G~~GsGKT~lalq~~~~~ 61 (258)
T d1v5wa_ 33 GIESMAITEAFGEFRTGKTQLSHTLCVTA 61 (258)
T ss_dssp SBCSSEEEEEECCTTCTHHHHHHHHHHHT
T ss_pred CCcCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 47999999999999999999998887643
|
| >d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Gene 4 protein (g4p, DNA primase), helicase domain species: Bacteriophage T7 [TaxId: 10760]
Probab=96.09 E-value=0.0014 Score=55.91 Aligned_cols=35 Identities=14% Similarity=0.168 Sum_probs=29.6
Q ss_pred cccccccccCCCcEEEEECCCCCcHHHHHHHHHHH
Q 021362 96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRR 130 (313)
Q Consensus 96 ~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl 130 (313)
.|+++..-+.+|+++.|.|++|+|||||+.-|+--
T Consensus 24 ~lD~~~~G~~~G~l~vi~G~~G~GKT~~~~~la~~ 58 (277)
T d1cr2a_ 24 GINDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQ 58 (277)
T ss_dssp THHHHHCSBCTTCEEEEECSTTSSHHHHHHHHHHH
T ss_pred hHHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHHh
Confidence 56666556899999999999999999999888754
|
| >d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab3a species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=96.07 E-value=0.0016 Score=51.45 Aligned_cols=21 Identities=14% Similarity=0.278 Sum_probs=19.0
Q ss_pred EEEECCCCCcHHHHHHHHHHH
Q 021362 110 VGLAGPPGAGKSTLAAEVVRR 130 (313)
Q Consensus 110 v~l~GpNGsGKSTLlk~l~gl 130 (313)
++++|+.|+|||||++.+.+-
T Consensus 8 i~vvG~~~vGKTsLi~~l~~~ 28 (169)
T d3raba_ 8 ILIIGNSSVGKTSFLFRYADD 28 (169)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCcCHHHHHHHHHcC
Confidence 789999999999999988764
|
| >d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor IF2/eIF5b, N-terminal (G) domain species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=96.04 E-value=0.0017 Score=54.23 Aligned_cols=23 Identities=30% Similarity=0.395 Sum_probs=21.3
Q ss_pred EEEEECCCCCcHHHHHHHHHHHh
Q 021362 109 IVGLAGPPGAGKSTLAAEVVRRI 131 (313)
Q Consensus 109 iv~l~GpNGsGKSTLlk~l~gl~ 131 (313)
+++|+|...||||||++.|.+..
T Consensus 7 ~IaIiGh~d~GKSTL~~~L~~~~ 29 (227)
T d1g7sa4 7 IVSVLGHVDHGKTTLLDHIRGSA 29 (227)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEEeCCCccHHHHHHHHHhhc
Confidence 59999999999999999998865
|
| >d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab11b species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.01 E-value=0.0018 Score=51.51 Aligned_cols=21 Identities=43% Similarity=0.607 Sum_probs=18.9
Q ss_pred EEEECCCCCcHHHHHHHHHHH
Q 021362 110 VGLAGPPGAGKSTLAAEVVRR 130 (313)
Q Consensus 110 v~l~GpNGsGKSTLlk~l~gl 130 (313)
++|+|+.|+|||||++.+.+-
T Consensus 7 i~vvG~~~vGKTsLi~~~~~~ 27 (175)
T d2f9la1 7 VVLIGDSGVGKSNLLSRFTRN 27 (175)
T ss_dssp EEEESSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCcCHHHHHHHHHhC
Confidence 789999999999999988763
|
| >d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=96.00 E-value=0.0016 Score=54.30 Aligned_cols=26 Identities=27% Similarity=0.438 Sum_probs=23.3
Q ss_pred cCCCcEEEEECCCCCcHHHHHHHHHH
Q 021362 104 VNVKHIVGLAGPPGAGKSTLAAEVVR 129 (313)
Q Consensus 104 i~~Geiv~l~GpNGsGKSTLlk~l~g 129 (313)
+++|.++.|.||+|||||||.-.++-
T Consensus 33 lp~G~~~li~G~pGsGKT~~~lq~~~ 58 (254)
T d1pzna2 33 IETQAITEVFGEFGSGKTQLAHTLAV 58 (254)
T ss_dssp EESSEEEEEEESTTSSHHHHHHHHHH
T ss_pred ccCCEEEEEEcCCCCCHHHHHHHHHH
Confidence 78999999999999999999876654
|
| >d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: cH-p21 Ras protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.99 E-value=0.0016 Score=51.17 Aligned_cols=22 Identities=27% Similarity=0.533 Sum_probs=19.5
Q ss_pred EEEEECCCCCcHHHHHHHHHHH
Q 021362 109 IVGLAGPPGAGKSTLAAEVVRR 130 (313)
Q Consensus 109 iv~l~GpNGsGKSTLlk~l~gl 130 (313)
-++|+|++|+|||||++.+.+-
T Consensus 5 Ki~viG~~~vGKTsli~~l~~~ 26 (166)
T d1ctqa_ 5 KLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 3789999999999999988764
|
| >d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Escherichia coli [TaxId: 562]
Probab=95.99 E-value=0.0024 Score=54.63 Aligned_cols=27 Identities=33% Similarity=0.594 Sum_probs=23.2
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHHHhc
Q 021362 106 VKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 106 ~Geiv~l~GpNGsGKSTLlk~l~gl~~ 132 (313)
...-+.|.||+|+|||+|++.|+..+.
T Consensus 44 ~~~~iLL~GppGtGKT~la~~iA~~~~ 70 (256)
T d1lv7a_ 44 IPKGVLMVGPPGTGKTLLAKAIAGEAK 70 (256)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CCCeEEeeCCCCCCccHHHHHHHHHcC
Confidence 344577999999999999999999885
|
| >d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Archaeal ATPase SSO1545 species: Sulfolobus solfataricus [TaxId: 2287]
Probab=95.99 E-value=0.0018 Score=54.36 Aligned_cols=27 Identities=22% Similarity=0.239 Sum_probs=23.4
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHHHhc
Q 021362 106 VKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 106 ~Geiv~l~GpNGsGKSTLlk~l~gl~~ 132 (313)
.+.++.|.||.|+|||||++.++.-..
T Consensus 28 ~~~~i~i~G~~G~GKTsLl~~~~~~~~ 54 (283)
T d2fnaa2 28 RAPITLVLGLRRTGKSSIIKIGINELN 54 (283)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHHT
T ss_pred cCCEEEEEcCCCCcHHHHHHHHHHHCC
Confidence 567899999999999999998876653
|
| >d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6, N-domain species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Probab=95.98 E-value=0.0032 Score=52.68 Aligned_cols=26 Identities=23% Similarity=0.304 Sum_probs=23.4
Q ss_pred CcEEEEECCCCCcHHHHHHHHHHHhc
Q 021362 107 KHIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 107 Geiv~l~GpNGsGKSTLlk~l~gl~~ 132 (313)
...+.|.||.|+||||+++.|+..++
T Consensus 43 ~~~lll~GppGtGKT~l~~~l~~~l~ 68 (276)
T d1fnna2 43 YPRATLLGRPGTGKTVTLRKLWELYK 68 (276)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCceEEECCCCCCHHHHHHHHHHHHh
Confidence 35788999999999999999999985
|
| >d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab23 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.93 E-value=0.002 Score=50.49 Aligned_cols=20 Identities=20% Similarity=0.371 Sum_probs=18.1
Q ss_pred EEEECCCCCcHHHHHHHHHH
Q 021362 110 VGLAGPPGAGKSTLAAEVVR 129 (313)
Q Consensus 110 v~l~GpNGsGKSTLlk~l~g 129 (313)
++|+|+.|+|||||++.+.+
T Consensus 5 v~liG~~~vGKSsLi~rl~~ 24 (164)
T d1z2aa1 5 MVVVGNGAVGKSSMIQRYCK 24 (164)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 78999999999999987775
|
| >d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=95.92 E-value=0.0019 Score=53.05 Aligned_cols=26 Identities=15% Similarity=0.396 Sum_probs=22.8
Q ss_pred ccCCCcEEEEECCCCCcHHHHHHHHH
Q 021362 103 NVNVKHIVGLAGPPGAGKSTLAAEVV 128 (313)
Q Consensus 103 ~i~~Geiv~l~GpNGsGKSTLlk~l~ 128 (313)
-+++|+++.|.|++|+|||||+.-++
T Consensus 22 Gi~~G~~~~I~G~~G~GKT~la~~~~ 47 (242)
T d1tf7a1 22 GLPIGRSTLVSGTSGTGKTLFSIQFL 47 (242)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHH
T ss_pred CCcCCeEEEEEeCCCCCHHHHHHHHH
Confidence 47899999999999999999986544
|
| >d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=95.92 E-value=0.0019 Score=53.34 Aligned_cols=28 Identities=18% Similarity=0.392 Sum_probs=25.3
Q ss_pred cCCCcEEEEECCCCCcHHHHHHHHHHHh
Q 021362 104 VNVKHIVGLAGPPGAGKSTLAAEVVRRI 131 (313)
Q Consensus 104 i~~Geiv~l~GpNGsGKSTLlk~l~gl~ 131 (313)
+.+|+++.|.|++|+|||||+--++-..
T Consensus 31 l~~G~l~~i~G~~G~GKT~~~l~~a~~~ 58 (258)
T d2i1qa2 31 LESQSVTEFAGVFGSGKTQIMHQSCVNL 58 (258)
T ss_dssp EETTEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred ccCCeEEEEEeCCCCCHHHHHHHHHHHH
Confidence 8899999999999999999998877654
|
| >d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=95.88 E-value=0.002 Score=53.59 Aligned_cols=28 Identities=25% Similarity=0.369 Sum_probs=25.1
Q ss_pred cCCCcEEEEECCCCCcHHHHHHHHHHHh
Q 021362 104 VNVKHIVGLAGPPGAGKSTLAAEVVRRI 131 (313)
Q Consensus 104 i~~Geiv~l~GpNGsGKSTLlk~l~gl~ 131 (313)
+++|.++.|.|++|+|||||+.-++-..
T Consensus 23 i~~gsl~li~G~pGsGKT~l~~qia~~~ 50 (242)
T d1tf7a2 23 FFKDSIILATGATGTGKTLLVSRFVENA 50 (242)
T ss_dssp EESSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CcCCeEEEEEeCCCCCHHHHHHHHHHHH
Confidence 7899999999999999999997776654
|
| >d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=95.85 E-value=0.0024 Score=54.25 Aligned_cols=25 Identities=44% Similarity=0.648 Sum_probs=22.2
Q ss_pred cEEEEECCCCCcHHHHHHHHHHHhc
Q 021362 108 HIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 108 eiv~l~GpNGsGKSTLlk~l~gl~~ 132 (313)
.-+.|.||.|+|||+|++.|+....
T Consensus 41 ~~vLL~GppGtGKT~la~alA~~~~ 65 (246)
T d1d2na_ 41 VSVLLEGPPHSGKTALAAKIAEESN 65 (246)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHT
T ss_pred eEEEEECcCCCCHHHHHHHHhhccc
Confidence 3477999999999999999999875
|
| >d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein Sec4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.79 E-value=0.0023 Score=50.24 Aligned_cols=21 Identities=38% Similarity=0.529 Sum_probs=18.8
Q ss_pred EEEECCCCCcHHHHHHHHHHH
Q 021362 110 VGLAGPPGAGKSTLAAEVVRR 130 (313)
Q Consensus 110 v~l~GpNGsGKSTLlk~l~gl 130 (313)
++++|.+|+|||||++.+.+-
T Consensus 5 i~vvG~~~vGKTSli~~l~~~ 25 (166)
T d1g16a_ 5 ILLIGDSGVGKSCLLVRFVED 25 (166)
T ss_dssp EEEEESTTSSHHHHHHHHHHC
T ss_pred EEEECCCCcCHHHHHHHHHhC
Confidence 689999999999999988764
|
| >d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab2b species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.77 E-value=0.0026 Score=50.36 Aligned_cols=21 Identities=29% Similarity=0.420 Sum_probs=18.5
Q ss_pred EEEECCCCCcHHHHHHHHHHH
Q 021362 110 VGLAGPPGAGKSTLAAEVVRR 130 (313)
Q Consensus 110 v~l~GpNGsGKSTLlk~l~gl 130 (313)
+.|+|++|+|||||++.+.+-
T Consensus 6 ivvvG~~~vGKTsli~r~~~~ 26 (173)
T d2a5ja1 6 YIIIGDTGVGKSCLLLQFTDK 26 (173)
T ss_dssp EEEESSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCcCHHHHHHHHhcC
Confidence 679999999999999987654
|
| >d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.76 E-value=0.0027 Score=52.47 Aligned_cols=23 Identities=26% Similarity=0.426 Sum_probs=20.7
Q ss_pred EEEECCCCCcHHHHHHHHHHHhc
Q 021362 110 VGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 110 v~l~GpNGsGKSTLlk~l~gl~~ 132 (313)
+.|.||+|+||||++++++..+.
T Consensus 39 ~ll~Gp~G~GKTt~a~~la~~l~ 61 (224)
T d1sxjb2 39 MIISGMPGIGKTTSVHCLAHELL 61 (224)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHH
T ss_pred EEEECCCCCCchhhHHHHHHHHh
Confidence 56899999999999999998764
|
| >d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL3 [TaxId: 10090]
Probab=95.74 E-value=0.0014 Score=51.95 Aligned_cols=24 Identities=29% Similarity=0.318 Sum_probs=20.2
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHH
Q 021362 106 VKHIVGLAGPPGAGKSTLAAEVVR 129 (313)
Q Consensus 106 ~Geiv~l~GpNGsGKSTLlk~l~g 129 (313)
+---++|+|+.|+|||||++.+.+
T Consensus 15 ~~~kI~vvG~~~vGKSsLi~~l~~ 38 (176)
T d1fzqa_ 15 QEVRILLLGLDNAGKTTLLKQLAS 38 (176)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHCC
T ss_pred CEEEEEEECCCCCCHHHHHHHHhc
Confidence 334588999999999999998865
|
| >d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein RheB species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.74 E-value=0.0024 Score=50.11 Aligned_cols=22 Identities=27% Similarity=0.427 Sum_probs=19.3
Q ss_pred EEEEECCCCCcHHHHHHHHHHH
Q 021362 109 IVGLAGPPGAGKSTLAAEVVRR 130 (313)
Q Consensus 109 iv~l~GpNGsGKSTLlk~l~gl 130 (313)
-++|+|+.|+|||||++.+.+-
T Consensus 6 Kv~liG~~~vGKTsLl~~~~~~ 27 (167)
T d1xtqa1 6 KIAILGYRSVGKSSLTIQFVEG 27 (167)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCcCHHHHHHHHHhC
Confidence 5789999999999999988753
|
| >d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.72 E-value=0.003 Score=54.18 Aligned_cols=29 Identities=31% Similarity=0.503 Sum_probs=24.4
Q ss_pred cCCCcEEEEECCCCCcHHHHHHHHHHHhc
Q 021362 104 VNVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 104 i~~Geiv~l~GpNGsGKSTLlk~l~gl~~ 132 (313)
+..+.-+.|.||+|+|||+|++.|++.+.
T Consensus 38 ~~~~~giLL~Gp~GtGKT~l~~ala~~~~ 66 (265)
T d1r7ra3 38 MTPSKGVLFYGPPGCGKTLLAKAIANECQ 66 (265)
T ss_dssp CCCCCEEEEBCCTTSSHHHHHHHHHHHTT
T ss_pred CCCCCeEEEECCCCCcchhHHHHHHHHhC
Confidence 44445577999999999999999999875
|
| >d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.71 E-value=0.0026 Score=50.22 Aligned_cols=21 Identities=29% Similarity=0.491 Sum_probs=18.9
Q ss_pred EEEEECCCCCcHHHHHHHHHH
Q 021362 109 IVGLAGPPGAGKSTLAAEVVR 129 (313)
Q Consensus 109 iv~l~GpNGsGKSTLlk~l~g 129 (313)
-+.|+|.+|+|||||++.+.+
T Consensus 7 Ki~lvG~~~vGKTsLi~r~~~ 27 (171)
T d2erya1 7 RLVVVGGGGVGKSALTIQFIQ 27 (171)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 588999999999999998766
|
| >d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.68 E-value=0.0038 Score=50.07 Aligned_cols=30 Identities=30% Similarity=0.303 Sum_probs=23.2
Q ss_pred EEEEECCCCCcHHHHHHHHHHHhcccCCCCc
Q 021362 109 IVGLAGPPGAGKSTLAAEVVRRINKIWPQKA 139 (313)
Q Consensus 109 iv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G 139 (313)
-+.|+|.+|+|||||++.+. ......||-|
T Consensus 4 KivllG~~~vGKTsll~r~~-f~~~~~pTiG 33 (200)
T d1zcba2 4 KILLLGAGESGKSTFLKQMR-IIHGQDPTKG 33 (200)
T ss_dssp EEEEECSTTSSHHHHHHHHH-HHHSCCCCSS
T ss_pred EEEEECCCCCCHHHHHHHHh-cCCCCCCeee
Confidence 47899999999999999984 3433347776
|
| >d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab30 species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.66 E-value=0.0027 Score=50.09 Aligned_cols=22 Identities=27% Similarity=0.439 Sum_probs=19.4
Q ss_pred EEEEECCCCCcHHHHHHHHHHH
Q 021362 109 IVGLAGPPGAGKSTLAAEVVRR 130 (313)
Q Consensus 109 iv~l~GpNGsGKSTLlk~l~gl 130 (313)
-+.|+|..|+|||||++.+.+-
T Consensus 7 Ki~lvG~~~vGKTsLi~~l~~~ 28 (171)
T d2ew1a1 7 KIVLIGNAGVGKTCLVRRFTQG 28 (171)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCcCHHHHHHHHHhC
Confidence 3789999999999999988863
|
| >d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap2a species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.65 E-value=0.0031 Score=49.45 Aligned_cols=22 Identities=36% Similarity=0.486 Sum_probs=19.5
Q ss_pred EEEEECCCCCcHHHHHHHHHHH
Q 021362 109 IVGLAGPPGAGKSTLAAEVVRR 130 (313)
Q Consensus 109 iv~l~GpNGsGKSTLlk~l~gl 130 (313)
-+.|+|..|+|||||++.+.+-
T Consensus 5 Ki~lvG~~~vGKTsLi~r~~~~ 26 (167)
T d1kaoa_ 5 KVVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCcCHHHHHHHHHhC
Confidence 4789999999999999988764
|
| >d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab27b species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.63 E-value=0.0024 Score=51.09 Aligned_cols=20 Identities=25% Similarity=0.325 Sum_probs=18.1
Q ss_pred EEEECCCCCcHHHHHHHHHH
Q 021362 110 VGLAGPPGAGKSTLAAEVVR 129 (313)
Q Consensus 110 v~l~GpNGsGKSTLlk~l~g 129 (313)
+.|+|+.|+|||||++.+.+
T Consensus 8 i~ivG~~~vGKTsLi~~l~~ 27 (186)
T d2f7sa1 8 LLALGDSGVGKTTFLYRYTD 27 (186)
T ss_dssp EEEESCTTSSHHHHHHHHHC
T ss_pred EEEECCCCcCHHHHHHHHhc
Confidence 78999999999999988764
|
| >d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab7 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=95.62 E-value=0.0032 Score=50.28 Aligned_cols=20 Identities=35% Similarity=0.561 Sum_probs=18.3
Q ss_pred EEEECCCCCcHHHHHHHHHH
Q 021362 110 VGLAGPPGAGKSTLAAEVVR 129 (313)
Q Consensus 110 v~l~GpNGsGKSTLlk~l~g 129 (313)
++|+|..|+|||||++.+.+
T Consensus 5 v~vvG~~~vGKSSLi~~l~~ 24 (184)
T d1vg8a_ 5 VIILGDSGVGKTSLMNQYVN 24 (184)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 78999999999999998775
|
| >d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab14 species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.62 E-value=0.0032 Score=49.36 Aligned_cols=21 Identities=29% Similarity=0.398 Sum_probs=18.8
Q ss_pred EEEECCCCCcHHHHHHHHHHH
Q 021362 110 VGLAGPPGAGKSTLAAEVVRR 130 (313)
Q Consensus 110 v~l~GpNGsGKSTLlk~l~gl 130 (313)
+.|+|.+|+|||||++.+.+-
T Consensus 7 ivlvG~~~vGKTsli~~~~~~ 27 (166)
T d1z0fa1 7 YIIIGDMGVGKSCLLHQFTEK 27 (166)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCcCHHHHHHHHHhC
Confidence 789999999999999888764
|
| >d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: di-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.60 E-value=0.0028 Score=49.92 Aligned_cols=21 Identities=38% Similarity=0.572 Sum_probs=18.4
Q ss_pred EEEEECCCCCcHHHHHHHHHH
Q 021362 109 IVGLAGPPGAGKSTLAAEVVR 129 (313)
Q Consensus 109 iv~l~GpNGsGKSTLlk~l~g 129 (313)
-++|+|..|+|||||++.+.+
T Consensus 4 Ki~viG~~~vGKTsLi~r~~~ 24 (171)
T d2erxa1 4 RVAVFGAGGVGKSSLVLRFVK 24 (171)
T ss_dssp EEEEECCTTSSHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 368999999999999987765
|
| >d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-22a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.59 E-value=0.0034 Score=49.26 Aligned_cols=21 Identities=38% Similarity=0.495 Sum_probs=18.7
Q ss_pred EEEEECCCCCcHHHHHHHHHH
Q 021362 109 IVGLAGPPGAGKSTLAAEVVR 129 (313)
Q Consensus 109 iv~l~GpNGsGKSTLlk~l~g 129 (313)
-++|+|..|+|||||++.+..
T Consensus 6 Ki~lvG~~~vGKTsli~rl~~ 26 (167)
T d1z0ja1 6 KVCLLGDTGVGKSSIMWRFVE 26 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 378999999999999998875
|
| >d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho, ATPase domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Transcription termination factor Rho, ATPase domain species: Escherichia coli [TaxId: 562]
Probab=95.58 E-value=0.0034 Score=54.56 Aligned_cols=33 Identities=30% Similarity=0.420 Sum_probs=29.3
Q ss_pred cccccCCCcEEEEECCCCCcHHHHHHHHHHHhc
Q 021362 100 LASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 100 vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~ 132 (313)
.=+.|.+|+..+|+|++|+|||||+..|+....
T Consensus 36 ~l~PigrGQr~~I~g~~g~GKT~l~~~i~~~~~ 68 (289)
T d1xpua3 36 LASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIA 68 (289)
T ss_dssp HHSCCBTTCEEEEEECSSSSHHHHHHHHHHHHH
T ss_pred ecccccCCCeeeEeCCCCCCHHHHHHHHHHHHh
Confidence 335899999999999999999999999988665
|
| >d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-33b species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.57 E-value=0.0035 Score=48.90 Aligned_cols=21 Identities=19% Similarity=0.295 Sum_probs=18.7
Q ss_pred EEEECCCCCcHHHHHHHHHHH
Q 021362 110 VGLAGPPGAGKSTLAAEVVRR 130 (313)
Q Consensus 110 v~l~GpNGsGKSTLlk~l~gl 130 (313)
+.|+|..|+|||||++.+.+-
T Consensus 5 v~liG~~~vGKTsLl~~~~~~ 25 (165)
T d1z06a1 5 IIVIGDSNVGKTCLTYRFCAG 25 (165)
T ss_dssp EEEECCTTSSHHHHHHHHHHS
T ss_pred EEEECCCCcCHHHHHHHHHhC
Confidence 789999999999999988753
|
| >d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Thermus thermophilus [TaxId: 274]
Probab=95.57 E-value=0.0046 Score=52.47 Aligned_cols=24 Identities=46% Similarity=0.643 Sum_probs=21.7
Q ss_pred EEEEECCCCCcHHHHHHHHHHHhc
Q 021362 109 IVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 109 iv~l~GpNGsGKSTLlk~l~gl~~ 132 (313)
-+.|.||.|+|||+|++.|+..+.
T Consensus 44 giLl~GppGtGKT~la~aia~~~~ 67 (247)
T d1ixza_ 44 GVLLVGPPGVGKTHLARAVAGEAR 67 (247)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHTT
T ss_pred eEEEecCCCCChhHHHHHHHHHcC
Confidence 478999999999999999999775
|
| >d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab6 species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.56 E-value=0.0032 Score=49.21 Aligned_cols=21 Identities=19% Similarity=0.355 Sum_probs=18.9
Q ss_pred EEEECCCCCcHHHHHHHHHHH
Q 021362 110 VGLAGPPGAGKSTLAAEVVRR 130 (313)
Q Consensus 110 v~l~GpNGsGKSTLlk~l~gl 130 (313)
++|+|..|+|||||++.+.+-
T Consensus 3 v~vvG~~~vGKTsLi~r~~~~ 23 (164)
T d1yzqa1 3 LVFLGEQSVGKTSLITRFMYD 23 (164)
T ss_dssp EEEEESTTSSHHHHHHHHHHS
T ss_pred EEEECCCCcCHHHHHHHHHhC
Confidence 789999999999999988764
|
| >d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-inducible GTPase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.54 E-value=0.0024 Score=58.15 Aligned_cols=24 Identities=25% Similarity=0.303 Sum_probs=21.6
Q ss_pred cEEEEECCCCCcHHHHHHHHHHHh
Q 021362 108 HIVGLAGPPGAGKSTLAAEVVRRI 131 (313)
Q Consensus 108 eiv~l~GpNGsGKSTLlk~l~gl~ 131 (313)
--++|+|.+|+|||||+|.|.|.-
T Consensus 57 l~Iai~G~~n~GKSSLiNaL~G~~ 80 (400)
T d1tq4a_ 57 LNVAVTGETGSGKSSFINTLRGIG 80 (400)
T ss_dssp EEEEEEECTTSSHHHHHHHHHTCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC
Confidence 348999999999999999999954
|
| >d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric replicative helicase repA species: Escherichia coli [TaxId: 562]
Probab=95.54 E-value=0.0072 Score=51.11 Aligned_cols=27 Identities=37% Similarity=0.512 Sum_probs=23.9
Q ss_pred CCCcEEEEECCCCCcHHHHHHHHHHHh
Q 021362 105 NVKHIVGLAGPPGAGKSTLAAEVVRRI 131 (313)
Q Consensus 105 ~~Geiv~l~GpNGsGKSTLlk~l~gl~ 131 (313)
-+|+++.|.|++|+|||||+-.|+.-+
T Consensus 27 ~pg~~~~i~G~~G~GKS~l~l~la~~i 53 (274)
T d1nlfa_ 27 VAGTVGALVSPGGAGKSMLALQLAAQI 53 (274)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred cCCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence 469999999999999999998887655
|
| >d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6-like protein APE0152, N-terminal domain species: Aeropyrum pernix [TaxId: 56636]
Probab=95.52 E-value=0.0026 Score=53.62 Aligned_cols=24 Identities=46% Similarity=0.653 Sum_probs=20.8
Q ss_pred EEEEECCCCCcHHHHHHHHHHHhc
Q 021362 109 IVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 109 iv~l~GpNGsGKSTLlk~l~gl~~ 132 (313)
++.|.||.|+||||+++.++..+.
T Consensus 48 ~l~l~GppGtGKT~l~~~l~~~l~ 71 (287)
T d1w5sa2 48 IYGSIGRVGIGKTTLAKFTVKRVS 71 (287)
T ss_dssp EEECTTCCSSSHHHHHHHHHHHHH
T ss_pred EEEeECCCCCCHHHHHHHHHHHHH
Confidence 456679999999999999998874
|
| >d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rad species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.50 E-value=0.0032 Score=49.63 Aligned_cols=22 Identities=45% Similarity=0.453 Sum_probs=19.2
Q ss_pred EEEECCCCCcHHHHHHHHHHHh
Q 021362 110 VGLAGPPGAGKSTLAAEVVRRI 131 (313)
Q Consensus 110 v~l~GpNGsGKSTLlk~l~gl~ 131 (313)
++|+|..|+|||||++.+.+..
T Consensus 4 i~lvG~~~vGKTsLi~~~~~~~ 25 (168)
T d2gjsa1 4 VLLLGAPGVGKSALARIFGGVE 25 (168)
T ss_dssp EEEECCTTSSHHHHHHHHHTC-
T ss_pred EEEECCCCcCHHHHHHHHhCCc
Confidence 6899999999999999987754
|
| >d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab21 species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.50 E-value=0.0039 Score=48.95 Aligned_cols=20 Identities=30% Similarity=0.350 Sum_probs=18.2
Q ss_pred EEEECCCCCcHHHHHHHHHH
Q 021362 110 VGLAGPPGAGKSTLAAEVVR 129 (313)
Q Consensus 110 v~l~GpNGsGKSTLlk~l~g 129 (313)
+.|+|..|+|||||++.+.+
T Consensus 6 ivlvG~~~vGKTsLi~r~~~ 25 (167)
T d1z08a1 6 VVLLGEGCVGKTSLVLRYCE 25 (167)
T ss_dssp EEEECCTTSCHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 68999999999999998775
|
| >d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Ytp1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.49 E-value=0.0033 Score=50.78 Aligned_cols=21 Identities=33% Similarity=0.404 Sum_probs=18.9
Q ss_pred EEEECCCCCcHHHHHHHHHHH
Q 021362 110 VGLAGPPGAGKSTLAAEVVRR 130 (313)
Q Consensus 110 v~l~GpNGsGKSTLlk~l~gl 130 (313)
++|+|+.|+|||||++.+.+-
T Consensus 9 ivvvG~~~vGKTsli~~l~~~ 29 (194)
T d2bcgy1 9 LLLIGNSGVGKSCLLLRFSDD 29 (194)
T ss_dssp EEEEESTTSSHHHHHHHHHHC
T ss_pred EEEECCCCcCHHHHHHHHhhC
Confidence 789999999999999988763
|
| >d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab18 species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.48 E-value=0.0038 Score=49.54 Aligned_cols=22 Identities=27% Similarity=0.407 Sum_probs=19.4
Q ss_pred EEEEECCCCCcHHHHHHHHHHH
Q 021362 109 IVGLAGPPGAGKSTLAAEVVRR 130 (313)
Q Consensus 109 iv~l~GpNGsGKSTLlk~l~gl 130 (313)
-++|+|..|+|||||++.+.+-
T Consensus 9 Ki~vvG~~~vGKTsli~~l~~~ 30 (177)
T d1x3sa1 9 KILIIGESGVGKSSLLLRFTDD 30 (177)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCcCHHHHHHHHHhC
Confidence 3789999999999999988763
|
| >d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab9a species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.47 E-value=0.004 Score=49.22 Aligned_cols=20 Identities=45% Similarity=0.529 Sum_probs=18.1
Q ss_pred EEEECCCCCcHHHHHHHHHH
Q 021362 110 VGLAGPPGAGKSTLAAEVVR 129 (313)
Q Consensus 110 v~l~GpNGsGKSTLlk~l~g 129 (313)
++|+|++|+|||||++.+..
T Consensus 9 I~vvG~~~vGKSSli~~~~~ 28 (174)
T d1wmsa_ 9 VILLGDGGVGKSSLMNRYVT 28 (174)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHh
Confidence 78999999999999987765
|
| >d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoA species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.45 E-value=0.0036 Score=49.66 Aligned_cols=22 Identities=18% Similarity=0.225 Sum_probs=18.8
Q ss_pred EEEEECCCCCcHHHHHHHHHHH
Q 021362 109 IVGLAGPPGAGKSTLAAEVVRR 130 (313)
Q Consensus 109 iv~l~GpNGsGKSTLlk~l~gl 130 (313)
-+.|+|.+|+|||||++.+.+-
T Consensus 4 KivvvG~~~vGKTsLi~~~~~~ 25 (177)
T d1kmqa_ 4 KLVIVGDGACGKTCLLIVNSKD 25 (177)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCcCHHHHHHHHHhC
Confidence 3679999999999999887764
|
| >d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.45 E-value=0.0041 Score=51.29 Aligned_cols=23 Identities=35% Similarity=0.676 Sum_probs=20.8
Q ss_pred EEEECCCCCcHHHHHHHHHHHhc
Q 021362 110 VGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 110 v~l~GpNGsGKSTLlk~l~gl~~ 132 (313)
+-|.||.|+||||++++|+..+.
T Consensus 38 lLl~Gp~G~GKttl~~~la~~l~ 60 (227)
T d1sxjc2 38 LLFYGPPGTGKTSTIVALAREIY 60 (227)
T ss_dssp EEEECSSSSSHHHHHHHHHHHHH
T ss_pred EEEECCCCCChhHHHHHHHHHhh
Confidence 66999999999999999998764
|
| >d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C5 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.40 E-value=0.0036 Score=52.24 Aligned_cols=22 Identities=36% Similarity=0.569 Sum_probs=20.3
Q ss_pred EEEECCCCCcHHHHHHHHHHHh
Q 021362 110 VGLAGPPGAGKSTLAAEVVRRI 131 (313)
Q Consensus 110 v~l~GpNGsGKSTLlk~l~gl~ 131 (313)
+.|.||+|+||||+++.++..+
T Consensus 36 lll~Gp~G~GKTt~~~~la~~l 57 (252)
T d1sxje2 36 LLLYGPNGTGKKTRCMALLESI 57 (252)
T ss_dssp EEEECSTTSSHHHHHHTHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHhh
Confidence 6799999999999999999876
|
| >d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab4a species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.35 E-value=0.004 Score=49.13 Aligned_cols=21 Identities=29% Similarity=0.499 Sum_probs=18.8
Q ss_pred EEEECCCCCcHHHHHHHHHHH
Q 021362 110 VGLAGPPGAGKSTLAAEVVRR 130 (313)
Q Consensus 110 v~l~GpNGsGKSTLlk~l~gl 130 (313)
++|+|..|+|||||++.+.+-
T Consensus 8 I~lvG~~~vGKTsll~~~~~~ 28 (174)
T d2bmea1 8 FLVIGNAGTGKSCLLHQFIEK 28 (174)
T ss_dssp EEEEESTTSSHHHHHHHHHHS
T ss_pred EEEECCCCcCHHHHHHHHHhC
Confidence 789999999999999988753
|
| >d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.35 E-value=0.0058 Score=51.97 Aligned_cols=30 Identities=30% Similarity=0.474 Sum_probs=24.1
Q ss_pred ccccCCCcEEEEECCCCCcHHHHHHHHHHHhc
Q 021362 101 ASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 101 sl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~ 132 (313)
.+..++| +.|.||+|+|||+|++.++....
T Consensus 34 g~~~~~g--iLL~GppGtGKT~l~~ala~~~~ 63 (258)
T d1e32a2 34 GVKPPRG--ILLYGPPGTGKTLIARAVANETG 63 (258)
T ss_dssp CCCCCCE--EEEECCTTSSHHHHHHHHHHHTT
T ss_pred CCCCCce--eEEecCCCCCchHHHHHHHHHhC
Confidence 3334444 67899999999999999999774
|
| >d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Extracellular secretion NTPase EpsE species: Vibrio cholerae [TaxId: 666]
Probab=95.32 E-value=0.0071 Score=54.92 Aligned_cols=28 Identities=32% Similarity=0.496 Sum_probs=24.7
Q ss_pred CCCcEEEEECCCCCcHHHHHHHHHHHhc
Q 021362 105 NVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 105 ~~Geiv~l~GpNGsGKSTLlk~l~gl~~ 132 (313)
.++-++.|.||.||||||++..+...+.
T Consensus 156 ~~~GliLvtGpTGSGKSTTl~~~l~~~~ 183 (401)
T d1p9ra_ 156 RPHGIILVTGPTGSGKSTTLYAGLQELN 183 (401)
T ss_dssp SSSEEEEEECSTTSCHHHHHHHHHHHHC
T ss_pred hhhceEEEEcCCCCCccHHHHHHhhhhc
Confidence 4566899999999999999999999874
|
| >d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.28 E-value=0.0045 Score=48.98 Aligned_cols=22 Identities=27% Similarity=0.471 Sum_probs=19.0
Q ss_pred EEEEECCCCCcHHHHHHHHHHH
Q 021362 109 IVGLAGPPGAGKSTLAAEVVRR 130 (313)
Q Consensus 109 iv~l~GpNGsGKSTLlk~l~gl 130 (313)
-+.|+|..|+|||||++.+.+-
T Consensus 8 Kv~lvG~~~vGKTsLi~r~~~~ 29 (173)
T d2fn4a1 8 KLVVVGGGGVGKSALTIQFIQS 29 (173)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCcCHHHHHHHHHhC
Confidence 4789999999999999887653
|
| >d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ypt51 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.28 E-value=0.0049 Score=48.39 Aligned_cols=22 Identities=27% Similarity=0.386 Sum_probs=18.9
Q ss_pred EEEEECCCCCcHHHHHHHHHHH
Q 021362 109 IVGLAGPPGAGKSTLAAEVVRR 130 (313)
Q Consensus 109 iv~l~GpNGsGKSTLlk~l~gl 130 (313)
-++|+|..|+|||||++.+.+-
T Consensus 5 Ki~vvG~~~vGKTsLi~~~~~~ 26 (170)
T d1ek0a_ 5 KLVLLGEAAVGKSSIVLRFVSN 26 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCcCHHHHHHHHHhC
Confidence 4689999999999999987654
|
| >d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]
Probab=95.28 E-value=0.0027 Score=50.61 Aligned_cols=26 Identities=27% Similarity=0.289 Sum_probs=20.7
Q ss_pred CCCcEEEEECCCCCcHHHHHHHHHHH
Q 021362 105 NVKHIVGLAGPPGAGKSTLAAEVVRR 130 (313)
Q Consensus 105 ~~Geiv~l~GpNGsGKSTLlk~l~gl 130 (313)
++---+.|+|++|+|||||++.+.+-
T Consensus 15 ~k~~KI~lvG~~~vGKTsLi~~l~~~ 40 (182)
T d1moza_ 15 NKELRILILGLDGAGKTTILYRLQIG 40 (182)
T ss_dssp SSCEEEEEEEETTSSHHHHHHHTCCS
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcC
Confidence 33446789999999999999987543
|
| >d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-like estrogen-regulated growth inhibitor, RERG species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.27 E-value=0.0051 Score=48.39 Aligned_cols=21 Identities=29% Similarity=0.589 Sum_probs=18.8
Q ss_pred EEEECCCCCcHHHHHHHHHHH
Q 021362 110 VGLAGPPGAGKSTLAAEVVRR 130 (313)
Q Consensus 110 v~l~GpNGsGKSTLlk~l~gl 130 (313)
+.|+|+.|+|||||++-+.+-
T Consensus 5 i~lvG~~~vGKTsli~r~~~~ 25 (168)
T d2atva1 5 LAIFGRAGVGKSALVVRFLTK 25 (168)
T ss_dssp EEEECCTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHhC
Confidence 689999999999999988763
|
| >d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxynucleoside monophosphate kinase species: Bacteriophage T4 [TaxId: 10665]
Probab=95.27 E-value=0.0052 Score=51.16 Aligned_cols=24 Identities=25% Similarity=0.342 Sum_probs=21.0
Q ss_pred cEEEEECCCCCcHHHHHHHHHHHh
Q 021362 108 HIVGLAGPPGAGKSTLAAEVVRRI 131 (313)
Q Consensus 108 eiv~l~GpNGsGKSTLlk~l~gl~ 131 (313)
.++||.|+-||||||+++.|..-+
T Consensus 2 ~iIgiTG~igSGKsTva~~l~e~~ 25 (241)
T d1deka_ 2 KLIFLSGVKRSGKDTTADFIMSNY 25 (241)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHHhC
Confidence 379999999999999999997644
|
| >d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab5a species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.26 E-value=0.005 Score=48.39 Aligned_cols=22 Identities=32% Similarity=0.430 Sum_probs=19.1
Q ss_pred EEEEECCCCCcHHHHHHHHHHH
Q 021362 109 IVGLAGPPGAGKSTLAAEVVRR 130 (313)
Q Consensus 109 iv~l~GpNGsGKSTLlk~l~gl 130 (313)
-+.|+|..|+|||||++.+.+-
T Consensus 8 Ki~vvG~~~vGKTsLi~~l~~~ 29 (170)
T d1r2qa_ 8 KLVLLGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCcCHHHHHHHHHhC
Confidence 3689999999999999988753
|
| >d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=95.23 E-value=0.0067 Score=48.13 Aligned_cols=29 Identities=21% Similarity=0.166 Sum_probs=24.1
Q ss_pred EEEEECCCCCcHHHHHHHHHHHhcccCCCCce
Q 021362 109 IVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS 140 (313)
Q Consensus 109 iv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G~ 140 (313)
-+.|+|..|+|||||++-+....- |+.|.
T Consensus 4 KivllG~~~vGKTsl~~r~~~~~~---~t~~~ 32 (195)
T d1svsa1 4 KLLLLGAGESGKSTIVKQMKIIHE---AGTGI 32 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHS---CCCSE
T ss_pred EEEEECCCCCCHHHHHHHHhhCCC---CCccE
Confidence 368999999999999998876655 87774
|
| >d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Papillomavirus large T antigen helicase domain species: Simian virus 40 [TaxId: 10633]
Probab=95.21 E-value=0.0064 Score=54.52 Aligned_cols=31 Identities=32% Similarity=0.395 Sum_probs=28.2
Q ss_pred cccCCCcEEEEECCCCCcHHHHHHHHHHHhc
Q 021362 102 SNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 102 l~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~ 132 (313)
-.++++.++.+.||.|+|||||.+.|++.+.
T Consensus 149 ~~~~~~~~~~~~g~~~~gk~~~~~~~~~~~~ 179 (362)
T d1svma_ 149 YNIPKKRYWLFKGPIDSGKTTLAAALLELCG 179 (362)
T ss_dssp HCCTTCCEEEEECSTTSSHHHHHHHHHHHHC
T ss_pred hCCCCcCeEEEECCCCCCHHHHHHHHHHHcC
Confidence 3567888999999999999999999999986
|
| >d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rac species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.18 E-value=0.0054 Score=48.87 Aligned_cols=22 Identities=18% Similarity=0.205 Sum_probs=19.2
Q ss_pred EEEEECCCCCcHHHHHHHHHHH
Q 021362 109 IVGLAGPPGAGKSTLAAEVVRR 130 (313)
Q Consensus 109 iv~l~GpNGsGKSTLlk~l~gl 130 (313)
-++|+|..|+|||||++.+.+-
T Consensus 7 KivviG~~~vGKTsli~~~~~~ 28 (183)
T d1mh1a_ 7 KCVVVGDGAVGKTCLLISYTTN 28 (183)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5889999999999999887653
|
| >d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein GEM species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.16 E-value=0.0043 Score=49.08 Aligned_cols=23 Identities=43% Similarity=0.384 Sum_probs=20.1
Q ss_pred EEEEECCCCCcHHHHHHHHHHHh
Q 021362 109 IVGLAGPPGAGKSTLAAEVVRRI 131 (313)
Q Consensus 109 iv~l~GpNGsGKSTLlk~l~gl~ 131 (313)
-+.|+|..|+|||||++.+.+..
T Consensus 5 Kv~lvG~~~vGKTsLi~~~~~~~ 27 (172)
T d2g3ya1 5 RVVLIGEQGVGKSTLANIFAGVH 27 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHHCCC
T ss_pred EEEEECCCCcCHHHHHHHHHhCc
Confidence 37899999999999999988754
|
| >d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.15 E-value=0.0034 Score=56.26 Aligned_cols=41 Identities=20% Similarity=0.464 Sum_probs=29.2
Q ss_pred EEEccceEEccccccccccccccccccCCCcEEEEECCCCCcHHHHHHHHH
Q 021362 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVV 128 (313)
Q Consensus 78 l~~~~l~~~y~~~~~~~~~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~ 128 (313)
|+++|. ++|.+.. .|+ +..+.+.+|+|||||||||++.+|.
T Consensus 6 l~l~NF-ks~~~~~-------~i~--f~~~~l~~i~G~NGsGKS~ileAi~ 46 (427)
T d1w1wa_ 6 LELSNF-KSYRGVT-------KVG--FGESNFTSIIGPNGSGKSNMMDAIS 46 (427)
T ss_dssp EEEESC-SSCCSEE-------EEE--CTTCSEEEEECSTTSSHHHHHHHHH
T ss_pred EEEeCe-eeeCCCE-------EEe--CCCCCEEEEECCCCCCHHHHHHHHH
Confidence 666674 4554322 233 3445589999999999999999986
|
| >d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Cow (Bos taurus) [TaxId: 9913]
Probab=95.14 E-value=0.0065 Score=50.28 Aligned_cols=29 Identities=21% Similarity=0.160 Sum_probs=22.2
Q ss_pred EEEEECCCCCcHHHHHHHHHHHhcccCCCCc
Q 021362 109 IVGLAGPPGAGKSTLAAEVVRRINKIWPQKA 139 (313)
Q Consensus 109 iv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G 139 (313)
-+.|+|.+|+|||||++-+..-. ..|+-|
T Consensus 8 KilllG~~~vGKTsll~~~~~~~--~~pTiG 36 (221)
T d1azta2 8 RLLLLGAGESGKSTIVKQMRILH--VVLTSG 36 (221)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH--CCCCCS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC--cCCCCC
Confidence 46899999999999998874322 227777
|
| >d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein M-Ras (XRas) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.14 E-value=0.0059 Score=48.09 Aligned_cols=21 Identities=29% Similarity=0.463 Sum_probs=18.6
Q ss_pred EEEEECCCCCcHHHHHHHHHH
Q 021362 109 IVGLAGPPGAGKSTLAAEVVR 129 (313)
Q Consensus 109 iv~l~GpNGsGKSTLlk~l~g 129 (313)
-+.|+|..|+|||||++.+.+
T Consensus 6 Ki~lvG~~~vGKTsll~~~~~ 26 (169)
T d1x1ra1 6 KLVVVGDGGVGKSALTIQFFQ 26 (169)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 367899999999999998876
|
| >d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab26 species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.12 E-value=0.0059 Score=47.97 Aligned_cols=20 Identities=35% Similarity=0.488 Sum_probs=18.2
Q ss_pred EEEECCCCCcHHHHHHHHHH
Q 021362 110 VGLAGPPGAGKSTLAAEVVR 129 (313)
Q Consensus 110 v~l~GpNGsGKSTLlk~l~g 129 (313)
++|+|+.|+|||||++.+.+
T Consensus 9 i~vvG~~~vGKTsli~~~~~ 28 (170)
T d2g6ba1 9 VMLVGDSGVGKTCLLVRFKD 28 (170)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 79999999999999997765
|
| >d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ATPase subunit of magnesium chelatase, BchI species: Rhodobacter capsulatus [TaxId: 1061]
Probab=95.09 E-value=0.0032 Score=55.42 Aligned_cols=24 Identities=29% Similarity=0.279 Sum_probs=22.1
Q ss_pred EEEEECCCCCcHHHHHHHHHHHhc
Q 021362 109 IVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 109 iv~l~GpNGsGKSTLlk~l~gl~~ 132 (313)
-+.|.||.|+|||||+|.++++++
T Consensus 30 ~vLl~G~pG~GKT~lar~~~~iLp 53 (333)
T d1g8pa_ 30 GVLVFGDRGTGKSTAVRALAALLP 53 (333)
T ss_dssp CEEEECCGGGCTTHHHHHHHHHSC
T ss_pred eEEEECCCCccHHHHHHHHHHhCC
Confidence 478999999999999999999984
|
| >d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=95.06 E-value=0.0057 Score=56.35 Aligned_cols=29 Identities=31% Similarity=0.537 Sum_probs=24.3
Q ss_pred ccCCCcEEEEECCCCCcHHHHHHHHHHHhc
Q 021362 103 NVNVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 103 ~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~ 132 (313)
++.+. =+.++||+|||||-|+|.|++++.
T Consensus 46 ei~ks-NILliGPTGvGKTlLAr~LAk~l~ 74 (443)
T d1g41a_ 46 EVTPK-NILMIGPTGVGKTEIARRLAKLAN 74 (443)
T ss_dssp TCCCC-CEEEECCTTSSHHHHHHHHHHHTT
T ss_pred ccccc-cEEEECCCCCCHHHHHHHHHHHhC
Confidence 44444 567999999999999999999885
|
| >d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Lactobacillus casei [TaxId: 1582]
Probab=95.04 E-value=0.007 Score=48.67 Aligned_cols=23 Identities=39% Similarity=0.398 Sum_probs=18.9
Q ss_pred CCcEEEEECCCCCcHHHHHHHHH
Q 021362 106 VKHIVGLAGPPGAGKSTLAAEVV 128 (313)
Q Consensus 106 ~Geiv~l~GpNGsGKSTLlk~l~ 128 (313)
.|.-+.|.|++|+|||||+-.+.
T Consensus 13 ~g~gvl~~G~sG~GKStlal~l~ 35 (176)
T d1kkma_ 13 YGLGVLITGDSGVGKSETALELV 35 (176)
T ss_dssp TTEEEEEECCTTSCHHHHHHHHH
T ss_pred CCEEEEEEeCCCCCHHHHHHHHH
Confidence 46678999999999999985544
|
| >d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Mycoplasma pneumoniae [TaxId: 2104]
Probab=94.99 E-value=0.0067 Score=48.83 Aligned_cols=31 Identities=29% Similarity=0.321 Sum_probs=22.8
Q ss_pred ccccccccCCCcEEEEECCCCCcHHHHHHHHH
Q 021362 97 TSALASNVNVKHIVGLAGPPGAGKSTLAAEVV 128 (313)
Q Consensus 97 L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~ 128 (313)
++..-+.+ .|.-+.|.|++|+|||||+-.+.
T Consensus 6 ~H~~~v~~-~g~gvli~G~sG~GKS~lal~l~ 36 (177)
T d1knxa2 6 IHGVLLEV-FGVGVLLTGRSGIGKSECALDLI 36 (177)
T ss_dssp EEEEEEEE-TTEEEEEEESSSSSHHHHHHHHH
T ss_pred EEEEEEEE-CCEEEEEEcCCCCCHHHHHHHHH
Confidence 34444445 57778999999999999985543
|
| >d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Centaurin gamma 1, G domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.98 E-value=0.0069 Score=48.22 Aligned_cols=22 Identities=27% Similarity=0.454 Sum_probs=19.3
Q ss_pred EEEEECCCCCcHHHHHHHHHHH
Q 021362 109 IVGLAGPPGAGKSTLAAEVVRR 130 (313)
Q Consensus 109 iv~l~GpNGsGKSTLlk~l~gl 130 (313)
-++++|..|+|||||++.+.+-
T Consensus 7 ki~vlG~~~vGKTsLi~~~~~~ 28 (175)
T d2bmja1 7 RLGVLGDARSGKSSLIHRFLTG 28 (175)
T ss_dssp EEEEECCTTTTHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5789999999999999977764
|
| >d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab8a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=94.95 E-value=0.0038 Score=49.36 Aligned_cols=20 Identities=25% Similarity=0.378 Sum_probs=8.5
Q ss_pred EEEECCCCCcHHHHHHHHHH
Q 021362 110 VGLAGPPGAGKSTLAAEVVR 129 (313)
Q Consensus 110 v~l~GpNGsGKSTLlk~l~g 129 (313)
+.|+|..|+|||||++.+.+
T Consensus 9 i~vvG~~~vGKTsLi~~l~~ 28 (173)
T d2fu5c1 9 LLLIGDSGVGKTCVLFRFSE 28 (173)
T ss_dssp EEEECCCCC-----------
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 78999999999999987765
|
| >d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein RalA species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]
Probab=94.91 E-value=0.0073 Score=47.46 Aligned_cols=21 Identities=33% Similarity=0.468 Sum_probs=18.6
Q ss_pred EEEEECCCCCcHHHHHHHHHH
Q 021362 109 IVGLAGPPGAGKSTLAAEVVR 129 (313)
Q Consensus 109 iv~l~GpNGsGKSTLlk~l~g 129 (313)
-+.|+|..|+|||||++.+.+
T Consensus 6 KivlvG~~~vGKTsli~~~~~ 26 (168)
T d1u8za_ 6 KVIMVGSGGVGKSALTLQFMY 26 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 478999999999999998765
|
| >d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxyguanosine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.87 E-value=0.0085 Score=49.67 Aligned_cols=25 Identities=20% Similarity=0.308 Sum_probs=22.8
Q ss_pred cEEEEECCCCCcHHHHHHHHHHHhc
Q 021362 108 HIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 108 eiv~l~GpNGsGKSTLlk~l~gl~~ 132 (313)
.+++|=|+-||||||+++.|...+.
T Consensus 3 k~IviEG~~GsGKST~~~~L~~~l~ 27 (241)
T d2ocpa1 3 RRLSIEGNIAVGKSTFVKLLTKTYP 27 (241)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred eEEEEECCCCCcHHHHHHHHHHHHh
Confidence 5889999999999999999998773
|
| >d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF6 [TaxId: 9606]
Probab=94.85 E-value=0.0042 Score=49.01 Aligned_cols=21 Identities=24% Similarity=0.267 Sum_probs=18.4
Q ss_pred EEEEECCCCCcHHHHHHHHHH
Q 021362 109 IVGLAGPPGAGKSTLAAEVVR 129 (313)
Q Consensus 109 iv~l~GpNGsGKSTLlk~l~g 129 (313)
-+.|+|++|+|||||++.+.+
T Consensus 14 kIvlvG~~~vGKTSli~rl~~ 34 (173)
T d1e0sa_ 14 RILMLGLDAAGKTTILYKLKL 34 (173)
T ss_dssp EEEEEEETTSSHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 577999999999999998764
|
| >d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap1A species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.82 E-value=0.008 Score=47.01 Aligned_cols=22 Identities=32% Similarity=0.487 Sum_probs=18.9
Q ss_pred EEEEECCCCCcHHHHHHHHHHH
Q 021362 109 IVGLAGPPGAGKSTLAAEVVRR 130 (313)
Q Consensus 109 iv~l~GpNGsGKSTLlk~l~gl 130 (313)
-+.|+|..|+|||||++-+.+-
T Consensus 5 KivvvG~~~vGKTsli~r~~~~ 26 (167)
T d1c1ya_ 5 KLVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 3789999999999999987653
|
| >d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.80 E-value=0.0047 Score=53.33 Aligned_cols=24 Identities=25% Similarity=0.342 Sum_probs=22.0
Q ss_pred cEEEEECCCCCcHHHHHHHHHHHh
Q 021362 108 HIVGLAGPPGAGKSTLAAEVVRRI 131 (313)
Q Consensus 108 eiv~l~GpNGsGKSTLlk~l~gl~ 131 (313)
-+|+|+||-++|||||++.|.|..
T Consensus 33 ~vvsi~G~~~sGKS~llN~l~~~~ 56 (277)
T d1f5na2 33 VVVAIVGLYRTGKSYLMNKLAGKK 56 (277)
T ss_dssp EEEEEEEBTTSSHHHHHHHHTTCS
T ss_pred EEEEEECCCCCCHHHHHHHHcCCC
Confidence 599999999999999999999854
|
| >d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoQ species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.75 E-value=0.0076 Score=48.14 Aligned_cols=20 Identities=20% Similarity=0.267 Sum_probs=18.0
Q ss_pred EEEECCCCCcHHHHHHHHHH
Q 021362 110 VGLAGPPGAGKSTLAAEVVR 129 (313)
Q Consensus 110 v~l~GpNGsGKSTLlk~l~g 129 (313)
+.|+|..|+|||||++.+..
T Consensus 12 i~lvG~~~vGKTsLi~r~~~ 31 (185)
T d2atxa1 12 CVVVGDGAVGKTCLLMSYAN 31 (185)
T ss_dssp EEEEECTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHhh
Confidence 78999999999999987764
|
| >d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ran species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.75 E-value=0.0037 Score=49.38 Aligned_cols=21 Identities=29% Similarity=0.438 Sum_probs=17.6
Q ss_pred EEEEECCCCCcHHHHHHHHHH
Q 021362 109 IVGLAGPPGAGKSTLAAEVVR 129 (313)
Q Consensus 109 iv~l~GpNGsGKSTLlk~l~g 129 (313)
-++|+|+.|+|||||++.+.+
T Consensus 5 Ki~vvG~~~vGKTsli~~~~~ 25 (170)
T d1i2ma_ 5 KLVLVGDGGTGKTTFVKRHLT 25 (170)
T ss_dssp EEEEEECTTSSHHHHHHTTC-
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 378999999999999987654
|
| >d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpA, an Hsp100 chaperone, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=94.71 E-value=0.011 Score=51.85 Aligned_cols=26 Identities=23% Similarity=0.484 Sum_probs=23.2
Q ss_pred CcEEEEECCCCCcHHHHHHHHHHHhc
Q 021362 107 KHIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 107 Geiv~l~GpNGsGKSTLlk~l~gl~~ 132 (313)
.-.+.++||+|+|||.|++.|+..+.
T Consensus 52 ~~~~lf~Gp~GvGKT~lak~la~~l~ 77 (315)
T d1r6bx3 52 VGSFLFAGPTGVGKTEVTVQLSKALG 77 (315)
T ss_dssp SEEEEEECSTTSSHHHHHHHHHHHHT
T ss_pred ceEEEEECCCcchhHHHHHHHHhhcc
Confidence 34788999999999999999999884
|
| >d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Escherichia coli [TaxId: 562]
Probab=94.64 E-value=0.011 Score=50.62 Aligned_cols=30 Identities=30% Similarity=0.544 Sum_probs=26.0
Q ss_pred ccCCCcEEEEECCCCCcHHHHHHHHHHHhc
Q 021362 103 NVNVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 103 ~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~ 132 (313)
-++.|.++-|.||+|+|||||+-.++....
T Consensus 50 Gi~~g~itei~G~~gsGKTtl~l~~~~~~q 79 (263)
T d1u94a1 50 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQ 79 (263)
T ss_dssp SEETTSEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CccCceEEEEecCCCcHHHHHHHHHHHHHH
Confidence 467999999999999999999877776654
|
| >d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Archaeon Pyrococcus abyssi [TaxId: 29292]
Probab=94.62 E-value=0.0077 Score=48.65 Aligned_cols=22 Identities=27% Similarity=0.465 Sum_probs=20.3
Q ss_pred EEEECCCCCcHHHHHHHHHHHh
Q 021362 110 VGLAGPPGAGKSTLAAEVVRRI 131 (313)
Q Consensus 110 v~l~GpNGsGKSTLlk~l~gl~ 131 (313)
+||+|.-.+|||||++.|.|..
T Consensus 8 IaiiGhvd~GKSTL~~~L~g~~ 29 (195)
T d1kk1a3 8 IGMVGHVDHGKTTLTKALTGVW 29 (195)
T ss_dssp EEEECSTTSSHHHHHHHHHTCC
T ss_pred EEEEeccCCcHHHHHHHHHhhh
Confidence 7999999999999999999865
|
| >d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: CDC42 species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.59 E-value=0.0086 Score=48.02 Aligned_cols=22 Identities=18% Similarity=0.205 Sum_probs=18.6
Q ss_pred EEEEECCCCCcHHHHHHHHHHH
Q 021362 109 IVGLAGPPGAGKSTLAAEVVRR 130 (313)
Q Consensus 109 iv~l~GpNGsGKSTLlk~l~gl 130 (313)
-++|+|..|+|||||++.+.+-
T Consensus 5 KvvllG~~~vGKTSli~r~~~~ 26 (191)
T d2ngra_ 5 KCVVVGDGAVGKTCLLISYTTN 26 (191)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCcCHHHHHHHHHhC
Confidence 3789999999999999877653
|
| >d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoE (RND3) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=94.54 E-value=0.0091 Score=47.49 Aligned_cols=21 Identities=19% Similarity=0.324 Sum_probs=17.9
Q ss_pred EEEEECCCCCcHHHHHHHHHH
Q 021362 109 IVGLAGPPGAGKSTLAAEVVR 129 (313)
Q Consensus 109 iv~l~GpNGsGKSTLlk~l~g 129 (313)
-+.|+|.+|+|||||++.+..
T Consensus 4 KivliG~~~vGKTsli~r~~~ 24 (179)
T d1m7ba_ 4 KIVVVGDSQCGKTALLHVFAK 24 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 368999999999999986655
|
| >d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: YchF GTP-binding protein N-terminal domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=94.51 E-value=0.02 Score=49.50 Aligned_cols=25 Identities=28% Similarity=0.546 Sum_probs=22.0
Q ss_pred CcEEEEECCCCCcHHHHHHHHHHHh
Q 021362 107 KHIVGLAGPPGAGKSTLAAEVVRRI 131 (313)
Q Consensus 107 Geiv~l~GpNGsGKSTLlk~l~gl~ 131 (313)
+--+||+|..-+|||||++.|++--
T Consensus 10 ~~kiGivG~Pn~GKSTlfnalT~~~ 34 (296)
T d1ni3a1 10 NLKTGIVGMPNVGKSTFFRAITKSV 34 (296)
T ss_dssp CCEEEEEECSSSSHHHHHHHHHHST
T ss_pred CcEEEEECCCCCCHHHHHHHHHCCC
Confidence 3459999999999999999999863
|
| >d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=94.46 E-value=0.013 Score=46.46 Aligned_cols=31 Identities=23% Similarity=0.160 Sum_probs=22.6
Q ss_pred EEEEECCCCCcHHHHHHHHHHHhcccCCCCc
Q 021362 109 IVGLAGPPGAGKSTLAAEVVRRINKIWPQKA 139 (313)
Q Consensus 109 iv~l~GpNGsGKSTLlk~l~gl~~~~~p~~G 139 (313)
-+.|+|..|+|||||++.+..-.-.-.|+-|
T Consensus 4 Kiv~lG~~~vGKTsll~r~~~~~~~~~pTiG 34 (200)
T d2bcjq2 4 KLLLLGTGESGKSTFIKQMRIIHGSGVPTTG 34 (200)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHTSSCCCCCS
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCceee
Confidence 3689999999999999988655432225544
|
| >d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Staphylococcus xylosus [TaxId: 1288]
Probab=94.46 E-value=0.011 Score=47.22 Aligned_cols=23 Identities=35% Similarity=0.380 Sum_probs=18.9
Q ss_pred CCcEEEEECCCCCcHHHHHHHHH
Q 021362 106 VKHIVGLAGPPGAGKSTLAAEVV 128 (313)
Q Consensus 106 ~Geiv~l~GpNGsGKSTLlk~l~ 128 (313)
.|.=|.|.|++|+|||||+-.+.
T Consensus 14 ~g~gvli~G~sg~GKS~la~~l~ 36 (169)
T d1ko7a2 14 YGVGVLITGDSGIGKSETALELI 36 (169)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHH
T ss_pred CCEEEEEEeCCCCCHHHHHHHHH
Confidence 46788999999999999884443
|
| >d1mo6a1 c.37.1.11 (A:1-269) RecA protein, ATPase-domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=94.42 E-value=0.015 Score=49.79 Aligned_cols=30 Identities=23% Similarity=0.449 Sum_probs=25.5
Q ss_pred ccCCCcEEEEECCCCCcHHHHHHHHHHHhc
Q 021362 103 NVNVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 103 ~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~ 132 (313)
-++.|.++-|.||+|+|||||+-.++....
T Consensus 56 G~~~g~i~e~~G~~~~GKT~l~l~~~~~~q 85 (269)
T d1mo6a1 56 GLPRGRVIEIYGPESSGKTTVALHAVANAQ 85 (269)
T ss_dssp SBCSSSEEEEECSSSSSHHHHHHHHHHHHH
T ss_pred CcccceeEEEecCCCcHHHHHHHHHHHHHh
Confidence 578999999999999999999866665543
|
| >d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein PH0525 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=94.36 E-value=0.0076 Score=52.59 Aligned_cols=22 Identities=32% Similarity=0.502 Sum_probs=19.4
Q ss_pred EEEECCCCCcHHHHHHHHHHHh
Q 021362 110 VGLAGPPGAGKSTLAAEVVRRI 131 (313)
Q Consensus 110 v~l~GpNGsGKSTLlk~l~gl~ 131 (313)
|||+|..-+|||||++.|+|.-
T Consensus 3 v~lvG~pn~GKStlfn~lt~~~ 24 (319)
T d1wxqa1 3 IGVVGKPNVGKSTFFSAATLVD 24 (319)
T ss_dssp EEEEECTTSSHHHHHHHHHC--
T ss_pred EeEECCCCCCHHHHHHHHHCCC
Confidence 7999999999999999998864
|
| >d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Probab=94.32 E-value=0.012 Score=48.08 Aligned_cols=23 Identities=35% Similarity=0.380 Sum_probs=20.0
Q ss_pred EEEEECCCCCcHHHHHHHHHHHh
Q 021362 109 IVGLAGPPGAGKSTLAAEVVRRI 131 (313)
Q Consensus 109 iv~l~GpNGsGKSTLlk~l~gl~ 131 (313)
-++|+|.-++|||||+..|.+..
T Consensus 5 ni~iiGhvd~GKSTL~~~Ll~~~ 27 (204)
T d2c78a3 5 NVGTIGHVDHGKTTLTAALTYVA 27 (204)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEEeCCCCcHHHHHHHHHHHh
Confidence 38999999999999999996554
|
| >d1jala1 c.37.1.8 (A:1-278) YchF GTP-binding protein N-terminal domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: YchF GTP-binding protein N-terminal domain species: Haemophilus influenzae [TaxId: 727]
Probab=94.16 E-value=0.013 Score=50.20 Aligned_cols=23 Identities=35% Similarity=0.509 Sum_probs=21.1
Q ss_pred EEEEECCCCCcHHHHHHHHHHHh
Q 021362 109 IVGLAGPPGAGKSTLAAEVVRRI 131 (313)
Q Consensus 109 iv~l~GpNGsGKSTLlk~l~gl~ 131 (313)
-+||+|-.-+|||||++.|++.-
T Consensus 4 ~~GivG~Pn~GKSTlf~~lt~~~ 26 (278)
T d1jala1 4 KCGIVGLPNVGKSTLFNALTKAG 26 (278)
T ss_dssp EEEEECCTTSSHHHHHHHHHHTC
T ss_pred eEEEECCCCCCHHHHHHHHHCCC
Confidence 58999999999999999999764
|
| >d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CED-4, NB-ARC domain species: Caenorhabditis elegans [TaxId: 6239]
Probab=94.15 E-value=0.015 Score=49.80 Aligned_cols=25 Identities=28% Similarity=0.481 Sum_probs=21.8
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHHH
Q 021362 106 VKHIVGLAGPPGAGKSTLAAEVVRR 130 (313)
Q Consensus 106 ~Geiv~l~GpNGsGKSTLlk~l~gl 130 (313)
...+++|.|.-|.|||||++.+..-
T Consensus 43 ~~~~v~I~GmgGiGKTtLA~~v~~~ 67 (277)
T d2a5yb3 43 DSFFLFLHGRAGSGKSVIASQALSK 67 (277)
T ss_dssp SSEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHh
Confidence 3569999999999999999988754
|
| >d2jdid3 c.37.1.11 (D:82-357) Central domain of beta subunit of F1 ATP synthase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Central domain of beta subunit of F1 ATP synthase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=94.09 E-value=0.02 Score=49.13 Aligned_cols=32 Identities=28% Similarity=0.467 Sum_probs=27.5
Q ss_pred cccccCCCcEEEEECCCCCcHHHHHHHHHHHh
Q 021362 100 LASNVNVKHIVGLAGPPGAGKSTLAAEVVRRI 131 (313)
Q Consensus 100 vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~ 131 (313)
.=+.+.+|+.++|.|+.|+|||||+..|+...
T Consensus 61 ~l~pigkGQr~~If~~~g~GKt~l~~~i~~~~ 92 (276)
T d2jdid3 61 LLAPYAKGGKIGLFGGAGVGKTVLIMELINNV 92 (276)
T ss_dssp HHSCEETTCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred eeccccCCCEEEeeCCCCCCHHHHHHHHHHHH
Confidence 34588999999999999999999988777654
|
| >d1xp8a1 c.37.1.11 (A:15-282) RecA protein, ATPase-domain {Deinococcus radiodurans [TaxId: 1299]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Deinococcus radiodurans [TaxId: 1299]
Probab=94.04 E-value=0.016 Score=49.71 Aligned_cols=30 Identities=30% Similarity=0.499 Sum_probs=26.6
Q ss_pred ccCCCcEEEEECCCCCcHHHHHHHHHHHhc
Q 021362 103 NVNVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 103 ~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~ 132 (313)
-++.|.++-|.||+|||||||+-.++....
T Consensus 53 Gip~g~itei~G~~~sGKT~l~l~~~~~aq 82 (268)
T d1xp8a1 53 GIPRGRITEIYGPESGGKTTLALAIVAQAQ 82 (268)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CccCceEEEEecCCccchHHHHHHHHHHHH
Confidence 468899999999999999999988887764
|
| >d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus, EF-G-2 [TaxId: 274]
Probab=94.03 E-value=0.013 Score=50.10 Aligned_cols=23 Identities=35% Similarity=0.627 Sum_probs=19.7
Q ss_pred EEEEECCCCCcHHHHHHHHHHHh
Q 021362 109 IVGLAGPPGAGKSTLAAEVVRRI 131 (313)
Q Consensus 109 iv~l~GpNGsGKSTLlk~l~gl~ 131 (313)
-++|+|+.|+|||||+..|...-
T Consensus 4 Nv~iiGh~~~GKTtL~e~ll~~~ 26 (267)
T d2dy1a2 4 TVALVGHAGSGKTTLTEALLYKT 26 (267)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHT
T ss_pred EEEEEcCCCCcHHHHHHHHHHHc
Confidence 37999999999999999995543
|
| >d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: delta prime subunit of DNA polymerase III, N-domain species: Escherichia coli [TaxId: 562]
Probab=93.74 E-value=0.02 Score=46.80 Aligned_cols=25 Identities=24% Similarity=0.396 Sum_probs=22.2
Q ss_pred cEEEEECCCCCcHHHHHHHHHHHhc
Q 021362 108 HIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 108 eiv~l~GpNGsGKSTLlk~l~gl~~ 132 (313)
..+.|.||.|+||||+++.++..+.
T Consensus 25 h~lLl~Gp~G~GKtt~a~~~a~~l~ 49 (207)
T d1a5ta2 25 HALLIQALPGMGDDALIYALSRYLL 49 (207)
T ss_dssp SEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCcHHHHHHHHHHhcc
Confidence 3578899999999999999999874
|
| >d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Probab=93.68 E-value=0.015 Score=49.95 Aligned_cols=21 Identities=29% Similarity=0.446 Sum_probs=18.8
Q ss_pred EEEEECCCCCcHHHHHHHHHH
Q 021362 109 IVGLAGPPGAGKSTLAAEVVR 129 (313)
Q Consensus 109 iv~l~GpNGsGKSTLlk~l~g 129 (313)
-++|+|+.|||||||+..|.-
T Consensus 8 ni~i~gh~~~GKTtL~e~ll~ 28 (276)
T d2bv3a2 8 NIGIAAHIDAGKTTTTERILY 28 (276)
T ss_dssp EEEEEECTTSCHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHH
Confidence 479999999999999999853
|
| >d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Hypothetical protein YjiA, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=93.62 E-value=0.015 Score=48.16 Aligned_cols=21 Identities=38% Similarity=0.547 Sum_probs=18.5
Q ss_pred EEEEECCCCCcHHHHHHHHHH
Q 021362 109 IVGLAGPPGAGKSTLAAEVVR 129 (313)
Q Consensus 109 iv~l~GpNGsGKSTLlk~l~g 129 (313)
++.|.|.=|||||||++-+..
T Consensus 5 v~iitGFLGaGKTTll~~lL~ 25 (222)
T d1nija1 5 VTLLTGFLGAGKTTLLRHILN 25 (222)
T ss_dssp EEEEEESSSSSCHHHHHHHHH
T ss_pred EEEEeeCCCCCHHHHHHHHHh
Confidence 678999999999999987765
|
| >d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Dictyostelium discoideum [TaxId: 44689]
Probab=93.56 E-value=0.014 Score=50.36 Aligned_cols=23 Identities=26% Similarity=0.429 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHHHHh
Q 021362 109 IVGLAGPPGAGKSTLAAEVVRRI 131 (313)
Q Consensus 109 iv~l~GpNGsGKSTLlk~l~gl~ 131 (313)
-++++|.-+||||||++.|.|.-
T Consensus 26 ~ivVvG~~ssGKSSliNaLlG~~ 48 (306)
T d1jwyb_ 26 QIVVVGSQSSGKSSVLENIVGRD 48 (306)
T ss_dssp EEEEEECSSSSHHHHHHHHHTSC
T ss_pred eEEEEeCCCCCHHHHHHHHhCCC
Confidence 36799999999999999999964
|
| >d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: delta prime subunit of DNA polymerase III, N-domain species: Escherichia coli [TaxId: 562]
Probab=93.37 E-value=0.027 Score=46.76 Aligned_cols=24 Identities=25% Similarity=0.475 Sum_probs=21.3
Q ss_pred EEEEECCCCCcHHHHHHHHHHHhc
Q 021362 109 IVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 109 iv~l~GpNGsGKSTLlk~l~gl~~ 132 (313)
.+.|.||+|+||||++++++..+.
T Consensus 36 ~~Ll~Gp~G~GKtt~a~~~~~~l~ 59 (239)
T d1njfa_ 36 AYLFSGTRGVGKTSIARLLAKGLN 59 (239)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHHHhc
Confidence 467889999999999999998875
|
| >d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain species: Cow (Bos taurus), mitochondrial [TaxId: 9913]
Probab=93.30 E-value=0.026 Score=45.83 Aligned_cols=22 Identities=36% Similarity=0.575 Sum_probs=20.6
Q ss_pred EEEECCCCCcHHHHHHHHHHHh
Q 021362 110 VGLAGPPGAGKSTLAAEVVRRI 131 (313)
Q Consensus 110 v~l~GpNGsGKSTLlk~l~gl~ 131 (313)
+||+|.-++|||||++.|.+..
T Consensus 6 i~iiGHvd~GKSTL~~~l~~~~ 27 (196)
T d1d2ea3 6 VGTIGHVDHGKTTLTAAITKIL 27 (196)
T ss_dssp EEEESSTTSSHHHHHHHHHHHH
T ss_pred EEEEeCCCCcHHHHHHHHHHHH
Confidence 7999999999999999998876
|
| >d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=93.29 E-value=0.016 Score=49.84 Aligned_cols=27 Identities=26% Similarity=0.469 Sum_probs=22.0
Q ss_pred cCCCcEEEEECCCCCcHHHHHHHHHHHh
Q 021362 104 VNVKHIVGLAGPPGAGKSTLAAEVVRRI 131 (313)
Q Consensus 104 i~~Geiv~l~GpNGsGKSTLlk~l~gl~ 131 (313)
+...+ ++++|.-.||||||++.|+|.-
T Consensus 24 ~~~P~-ivvvG~~SsGKSsliNaLlg~~ 50 (299)
T d2akab1 24 LDLPQ-IAVVGGQSAGKSSVLENFVGRD 50 (299)
T ss_dssp CCCCE-EEEEEBTTSCHHHHHHHHHTSC
T ss_pred CCCCe-EEEEcCCCCCHHHHHHHHhCCC
Confidence 33344 5689999999999999999954
|
| >d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: NTPase P4 species: Bacteriophage phi-12 [TaxId: 161736]
Probab=92.81 E-value=0.031 Score=49.03 Aligned_cols=28 Identities=18% Similarity=0.268 Sum_probs=22.9
Q ss_pred cCCCcEEEEECCCCCcHHHHHHHHHHHhc
Q 021362 104 VNVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 104 i~~Geiv~l~GpNGsGKSTLlk~l~gl~~ 132 (313)
..+| ++.+.||+|+|||.|.+.|++.+.
T Consensus 121 ~~~g-~~l~~G~pG~GKT~la~ala~~~~ 148 (321)
T d1w44a_ 121 YASG-MVIVTGKGNSGKTPLVHALGEALG 148 (321)
T ss_dssp EESE-EEEEECSSSSCHHHHHHHHHHHHH
T ss_pred cCCc-eEEEECCCCccHHHHHHHHHHHhc
Confidence 3444 556689999999999999999874
|
| >d1qvra3 c.37.1.20 (A:536-850) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpB, AAA+ modules species: Thermus thermophilus [TaxId: 274]
Probab=92.63 E-value=0.038 Score=48.19 Aligned_cols=26 Identities=27% Similarity=0.387 Sum_probs=22.6
Q ss_pred CcEEEEECCCCCcHHHHHHHHHHHhc
Q 021362 107 KHIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 107 Geiv~l~GpNGsGKSTLlk~l~gl~~ 132 (313)
.-++.++||+|+|||.|.+.|+..+-
T Consensus 53 ~~~~lf~Gp~G~GKt~lak~la~~l~ 78 (315)
T d1qvra3 53 IGSFLFLGPTGVGKTELAKTLAATLF 78 (315)
T ss_dssp SEEEEEBSCSSSSHHHHHHHHHHHHH
T ss_pred ceEEEEECCCcchHHHHHHHHHHHhc
Confidence 33677999999999999999999873
|
| >d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Chromosomal replication initiation factor DnaA species: Aquifex aeolicus [TaxId: 63363]
Probab=92.33 E-value=0.035 Score=45.54 Aligned_cols=23 Identities=22% Similarity=0.320 Sum_probs=20.8
Q ss_pred EEEECCCCCcHHHHHHHHHHHhc
Q 021362 110 VGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 110 v~l~GpNGsGKSTLlk~l~gl~~ 132 (313)
+.|.||+|+|||-|+++++....
T Consensus 39 l~l~G~~G~GKTHLl~A~~~~~~ 61 (213)
T d1l8qa2 39 IFIYGSVGTGKTHLLQAAGNEAK 61 (213)
T ss_dssp EEEECSSSSSHHHHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHHHhc
Confidence 67999999999999999988774
|
| >d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Sulfolobus solfataricus [TaxId: 2287]
Probab=92.30 E-value=0.038 Score=44.71 Aligned_cols=26 Identities=23% Similarity=0.319 Sum_probs=22.1
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHHHh
Q 021362 106 VKHIVGLAGPPGAGKSTLAAEVVRRI 131 (313)
Q Consensus 106 ~Geiv~l~GpNGsGKSTLlk~l~gl~ 131 (313)
+.--++|+|.-.+|||||++.|.|..
T Consensus 7 p~ini~iiGhVd~GKSTL~~~L~~~~ 32 (205)
T d2qn6a3 7 PEVNIGVVGHVDHGKTTLVQAITGIW 32 (205)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHSCC
T ss_pred CCeEEEEEEccCCcHHHHHHHHHhhh
Confidence 33458999999999999999998865
|
| >d1p6xa_ c.37.1.1 (A:) Thymidine kinase {Equine herpesvirus type 4 [TaxId: 10331]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidine kinase species: Equine herpesvirus type 4 [TaxId: 10331]
Probab=92.29 E-value=0.048 Score=47.97 Aligned_cols=24 Identities=29% Similarity=0.281 Sum_probs=21.8
Q ss_pred EEEEECCCCCcHHHHHHHHHHHhc
Q 021362 109 IVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 109 iv~l~GpNGsGKSTLlk~l~gl~~ 132 (313)
.|.|=|+=|+||||+++.|...+.
T Consensus 8 rI~iEG~iGsGKSTl~~~L~~~l~ 31 (333)
T d1p6xa_ 8 RIYLDGVYGIGKSTTGRVMASAAS 31 (333)
T ss_dssp EEEEECSTTSSHHHHHHHHHSGGG
T ss_pred EEEEECCccCCHHHHHHHHHHHhc
Confidence 578899999999999999999875
|
| >d1jbka_ c.37.1.20 (A:) ClpB, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpB, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=92.23 E-value=0.046 Score=44.38 Aligned_cols=26 Identities=35% Similarity=0.557 Sum_probs=22.5
Q ss_pred CcEEEEECCCCCcHHHHHHHHHHHhc
Q 021362 107 KHIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 107 Geiv~l~GpNGsGKSTLlk~l~gl~~ 132 (313)
..-+.|+||+|.|||+++.-|+..+.
T Consensus 43 k~n~lLvG~pGVGKTalv~~LA~ri~ 68 (195)
T d1jbka_ 43 KNNPVLIGEPGVGKTAIVEGLAQRII 68 (195)
T ss_dssp SCEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CCCeEEEecCCcccHHHHHHHHHHHH
Confidence 34578999999999999999998774
|
| >d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpA, an Hsp100 chaperone, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=92.06 E-value=0.046 Score=46.60 Aligned_cols=25 Identities=32% Similarity=0.436 Sum_probs=21.9
Q ss_pred cEEEEECCCCCcHHHHHHHHHHHhc
Q 021362 108 HIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 108 eiv~l~GpNGsGKSTLlk~l~gl~~ 132 (313)
.-+.|+||+|+|||+++.-++..+.
T Consensus 40 ~n~lLVG~~GvGKTalv~~la~ri~ 64 (268)
T d1r6bx2 40 NNPLLVGESGVGKTAIAEGLAWRIV 64 (268)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCcEEECCCCCcHHHHHHHHHHHHH
Confidence 4567999999999999999998774
|
| >d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Bacterial conjugative coupling protein TrwB species: Escherichia coli [TaxId: 562]
Probab=91.88 E-value=0.037 Score=49.76 Aligned_cols=25 Identities=28% Similarity=0.383 Sum_probs=19.2
Q ss_pred cEEEEECCCCCcHHHHHHHH-HHHhc
Q 021362 108 HIVGLAGPPGAGKSTLAAEV-VRRIN 132 (313)
Q Consensus 108 eiv~l~GpNGsGKSTLlk~l-~gl~~ 132 (313)
.-+.|+|++|||||++++.| ..++.
T Consensus 51 ~H~~I~G~tGsGKT~~l~~li~~~~~ 76 (433)
T d1e9ra_ 51 RHLLVNGATGTGKSVLLRELAYTGLL 76 (433)
T ss_dssp GCEEEEECTTSSHHHHHHHHHHHHHH
T ss_pred ceEEEEeCCCCcHHHHHHHHHHHHHh
Confidence 34789999999999999754 44443
|
| >d1fx0a3 c.37.1.11 (A:97-372) Central domain of alpha subunit of F1 ATP synthase {Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Central domain of alpha subunit of F1 ATP synthase species: Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]
Probab=91.86 E-value=0.041 Score=47.14 Aligned_cols=35 Identities=14% Similarity=0.136 Sum_probs=28.3
Q ss_pred cccccccccCCCcEEEEECCCCCcHHHHHHHHHHHh
Q 021362 96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRI 131 (313)
Q Consensus 96 ~L~~vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl~ 131 (313)
+++ .=+.+.+|+.++|+|++|+|||+|+..+.-..
T Consensus 57 ~ID-~l~pig~GQr~~Ifg~~g~GKt~l~~~~~~~~ 91 (276)
T d1fx0a3 57 AID-AMIPVGRGQRELIIGDRQTGKTAVATDTILNQ 91 (276)
T ss_dssp TTT-TTSCCBTTCBCBEEESSSSSHHHHHHHHHHTC
T ss_pred EEe-ccccccCCceEeeccCCCCChHHHHHHHHhhh
Confidence 443 44589999999999999999999998765444
|
| >d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpX species: Helicobacter pylori [TaxId: 210]
Probab=91.76 E-value=0.048 Score=48.57 Aligned_cols=29 Identities=28% Similarity=0.611 Sum_probs=23.5
Q ss_pred ccCCCcEEEEECCCCCcHHHHHHHHHHHhc
Q 021362 103 NVNVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 103 ~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~ 132 (313)
++.++-| -++||+|+|||-|.|.|+.++.
T Consensus 65 ~~p~~ni-LfiGPTGvGKTElAk~LA~~~~ 93 (364)
T d1um8a_ 65 ELSKSNI-LLIGPTGSGKTLMAQTLAKHLD 93 (364)
T ss_dssp TCCCCCE-EEECCTTSSHHHHHHHHHHHTT
T ss_pred cCCCcce-eeeCCCCccHHHHHHHHHhhcc
Confidence 3455654 5779999999999999998874
|
| >d1u0ja_ c.37.1.20 (A:) Rep 40 protein helicase domain {Adeno-associated virus 2, AAV2 [TaxId: 10804]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Rep 40 protein helicase domain species: Adeno-associated virus 2, AAV2 [TaxId: 10804]
Probab=91.32 E-value=0.074 Score=45.19 Aligned_cols=29 Identities=21% Similarity=0.477 Sum_probs=25.7
Q ss_pred ccCCCcEEEEECCCCCcHHHHHHHHHHHh
Q 021362 103 NVNVKHIVGLAGPPGAGKSTLAAEVVRRI 131 (313)
Q Consensus 103 ~i~~Geiv~l~GpNGsGKSTLlk~l~gl~ 131 (313)
...+--++.|.||.++|||||++.|..++
T Consensus 100 ~~~k~n~~~l~G~~~tGKS~f~~~i~~~l 128 (267)
T d1u0ja_ 100 KFGKRNTIWLFGPATTGKTNIAEAIAHTV 128 (267)
T ss_dssp CSTTCCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCccEEEEEEcCCCCCHHHHHHHHHHHh
Confidence 34566789999999999999999999998
|
| >d2jdia3 c.37.1.11 (A:95-379) Central domain of alpha subunit of F1 ATP synthase {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Central domain of alpha subunit of F1 ATP synthase species: Cow (Bos taurus) [TaxId: 9913]
Probab=91.23 E-value=0.043 Score=47.25 Aligned_cols=31 Identities=13% Similarity=0.165 Sum_probs=26.0
Q ss_pred cccccCCCcEEEEECCCCCcHHHHHHHHHHH
Q 021362 100 LASNVNVKHIVGLAGPPGAGKSTLAAEVVRR 130 (313)
Q Consensus 100 vsl~i~~Geiv~l~GpNGsGKSTLlk~l~gl 130 (313)
.=+.+-+|+.++|.|+.|+|||||+..++..
T Consensus 61 ~l~pig~GQr~~If~~~g~GKt~ll~~~~~~ 91 (285)
T d2jdia3 61 SLVPIGRGQRELIIGDRQTGKTSIAIDTIIN 91 (285)
T ss_dssp HHSCCBTTCBCEEEESTTSSHHHHHHHHHHH
T ss_pred cccCccCCCEEEeecCCCCChHHHHHHHHHh
Confidence 4468999999999999999999998655543
|
| >d1jnya3 c.37.1.8 (A:4-227) Elongation factor eEF-1alpha, N-terminal (G) domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor eEF-1alpha, N-terminal (G) domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=91.20 E-value=0.051 Score=44.74 Aligned_cols=20 Identities=30% Similarity=0.380 Sum_probs=18.2
Q ss_pred EEEECCCCCcHHHHHHHHHH
Q 021362 110 VGLAGPPGAGKSTLAAEVVR 129 (313)
Q Consensus 110 v~l~GpNGsGKSTLlk~l~g 129 (313)
+|++|.-++|||||+..|..
T Consensus 6 i~viGHVd~GKTTL~~~Ll~ 25 (224)
T d1jnya3 6 LIVIGHVDHGKSTLVGRLLM 25 (224)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred EEEEecCCCCHHHHHHHHHH
Confidence 89999999999999988854
|
| >d1uaaa1 c.37.1.19 (A:2-307) DEXX box DNA helicase {Escherichia coli, RepD [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: DEXX box DNA helicase species: Escherichia coli, RepD [TaxId: 562]
Probab=90.67 E-value=0.066 Score=45.25 Aligned_cols=24 Identities=17% Similarity=0.290 Sum_probs=17.5
Q ss_pred EEEEECCCCCcHHHH-HHHHHHHhc
Q 021362 109 IVGLAGPPGAGKSTL-AAEVVRRIN 132 (313)
Q Consensus 109 iv~l~GpNGsGKSTL-lk~l~gl~~ 132 (313)
-+.|.|+.||||||. +..++-++.
T Consensus 16 ~~lI~g~aGTGKTt~l~~rv~~ll~ 40 (306)
T d1uaaa1 16 PCLVLAGAGSGKTRVITNKIAHLIR 40 (306)
T ss_dssp EEEECCCTTSCHHHHHHHHHHHHHH
T ss_pred CEEEEeeCCccHHHHHHHHHHHHHH
Confidence 357889999999975 455555553
|
| >d1yksa1 c.37.1.14 (A:185-324) YFV helicase domain {Yellow fever virus [TaxId: 11089]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: YFV helicase domain species: Yellow fever virus [TaxId: 11089]
Probab=90.62 E-value=0.059 Score=39.67 Aligned_cols=21 Identities=29% Similarity=0.243 Sum_probs=18.3
Q ss_pred cCCCcEEEEECCCCCcHHHHH
Q 021362 104 VNVKHIVGLAGPPGAGKSTLA 124 (313)
Q Consensus 104 i~~Geiv~l~GpNGsGKSTLl 124 (313)
+++|+.+.|.+|.|||||+.+
T Consensus 4 l~~~~~~il~~~tGsGKT~~~ 24 (140)
T d1yksa1 4 LKKGMTTVLDFHPGAGKTRRF 24 (140)
T ss_dssp TSTTCEEEECCCTTSSTTTTH
T ss_pred HHcCCcEEEEcCCCCChhHHH
Confidence 578999999999999999554
|
| >d1osna_ c.37.1.1 (A:) Thymidine kinase {Varicella-zoster virus [TaxId: 10335]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidine kinase species: Varicella-zoster virus [TaxId: 10335]
Probab=90.60 E-value=0.061 Score=47.23 Aligned_cols=24 Identities=33% Similarity=0.451 Sum_probs=21.8
Q ss_pred EEEEECCCCCcHHHHHHHHHHHhc
Q 021362 109 IVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 109 iv~l~GpNGsGKSTLlk~l~gl~~ 132 (313)
.+.|=|+=||||||+++.|...+.
T Consensus 7 rI~IEG~iGsGKSTl~~~L~~~l~ 30 (331)
T d1osna_ 7 RIYLDGAYGIGKTTAAEEFLHHFA 30 (331)
T ss_dssp EEEEEESSSSCTTHHHHHHHHTTT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHh
Confidence 588999999999999999999874
|
| >d1e2ka_ c.37.1.1 (A:) Thymidine kinase {Herpes simplex virus type 1, different strains [TaxId: 10298]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidine kinase species: Herpes simplex virus type 1, different strains [TaxId: 10298]
Probab=90.58 E-value=0.053 Score=47.59 Aligned_cols=24 Identities=33% Similarity=0.382 Sum_probs=19.3
Q ss_pred EEEEECCCCCcHHHHHHHHHHHhc
Q 021362 109 IVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 109 iv~l~GpNGsGKSTLlk~l~gl~~ 132 (313)
.|.|-|+=||||||+++.|...+.
T Consensus 6 rI~IEG~iGsGKTTl~~~La~~l~ 29 (329)
T d1e2ka_ 6 RVYIDGPHGMGKTTTTQLLVALGS 29 (329)
T ss_dssp EEEECSCTTSSHHHHHHHHTC---
T ss_pred EEEEECCcCCCHHHHHHHHHHHhC
Confidence 478999999999999999987653
|
| >d1g8fa3 c.37.1.15 (A:390-511) ATP sulfurylase C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ATP sulfurylase C-terminal domain domain: ATP sulfurylase C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=90.31 E-value=0.13 Score=38.27 Aligned_cols=28 Identities=7% Similarity=0.084 Sum_probs=24.5
Q ss_pred CCCcEEEEECCCCCcHHHHHHHHHHHhc
Q 021362 105 NVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 105 ~~Geiv~l~GpNGsGKSTLlk~l~gl~~ 132 (313)
++|-.+.+-|-+|||||||.+.|.--+.
T Consensus 4 kqgf~i~~tg~~~~gk~~ia~al~~~l~ 31 (122)
T d1g8fa3 4 KQGFSIVLGNSLTVSREQLSIALLSTFL 31 (122)
T ss_dssp GCCEEEEECTTCCSCHHHHHHHHHHHHT
T ss_pred ccceEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 5788999999999999999999966554
|
| >d1zunb3 c.37.1.8 (B:16-237) Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain {Pseudomonas syringae pv. tomato [TaxId: 323]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain species: Pseudomonas syringae pv. tomato [TaxId: 323]
Probab=90.09 E-value=0.088 Score=43.38 Aligned_cols=22 Identities=27% Similarity=0.294 Sum_probs=19.6
Q ss_pred EEEECCCCCcHHHHHHHHHHHh
Q 021362 110 VGLAGPPGAGKSTLAAEVVRRI 131 (313)
Q Consensus 110 v~l~GpNGsGKSTLlk~l~gl~ 131 (313)
++++|.-.+|||||+..|....
T Consensus 12 i~viGHVd~GKSTL~~~Ll~~~ 33 (222)
T d1zunb3 12 FLTCGNVDDGKSTLIGRLLHDS 33 (222)
T ss_dssp EEEECCTTSSHHHHHHHHHHHT
T ss_pred EEEEcCCCCCHHHHHHHHHHHc
Confidence 6899999999999999997654
|
| >d1tuea_ c.37.1.20 (A:) Replication protein E1 helicase domain {Human papillomavirus type 18 [TaxId: 333761]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication protein E1 helicase domain species: Human papillomavirus type 18 [TaxId: 333761]
Probab=90.05 E-value=0.094 Score=42.68 Aligned_cols=30 Identities=23% Similarity=0.390 Sum_probs=27.2
Q ss_pred ccCCCcEEEEECCCCCcHHHHHHHHHHHhc
Q 021362 103 NVNVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 103 ~i~~Geiv~l~GpNGsGKSTLlk~l~gl~~ 132 (313)
.+++.-++.|.||.++|||+++..|+.++.
T Consensus 49 ~~PKkn~i~~~GP~~TGKS~f~~sl~~~l~ 78 (205)
T d1tuea_ 49 GTPKKNCLVFCGPANTGKSYFGMSFIHFIQ 78 (205)
T ss_dssp TCTTCSEEEEESCGGGCHHHHHHHHHHHHT
T ss_pred CCCCceEEEEECCCCccHHHHHHHHHHHhC
Confidence 467778999999999999999999999985
|
| >d1w36d1 c.37.1.19 (D:2-360) Exodeoxyribonuclease V alpha chain (RecD) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Exodeoxyribonuclease V alpha chain (RecD) species: Escherichia coli [TaxId: 562]
Probab=89.89 E-value=0.11 Score=46.05 Aligned_cols=26 Identities=35% Similarity=0.590 Sum_probs=20.3
Q ss_pred CCcEEEEECCCCCcHHHHHHHH-HHHh
Q 021362 106 VKHIVGLAGPPGAGKSTLAAEV-VRRI 131 (313)
Q Consensus 106 ~Geiv~l~GpNGsGKSTLlk~l-~gl~ 131 (313)
.+.++.|.||.|+||||++..+ ..+.
T Consensus 162 ~~~~~vI~G~pGTGKTt~i~~~l~~l~ 188 (359)
T d1w36d1 162 TRRISVISGGPGTGKTTTVAKLLAALI 188 (359)
T ss_dssp TBSEEEEECCTTSTHHHHHHHHHHHHH
T ss_pred cCCeEEEEcCCCCCceehHHHHHHHHH
Confidence 3669999999999999988554 3444
|
| >d2olra1 c.91.1.1 (A:228-540) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: PEP carboxykinase C-terminal domain domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) species: Escherichia coli [TaxId: 562]
Probab=89.55 E-value=0.085 Score=45.76 Aligned_cols=20 Identities=30% Similarity=0.483 Sum_probs=17.8
Q ss_pred CCCcEEEEECCCCCcHHHHH
Q 021362 105 NVKHIVGLAGPPGAGKSTLA 124 (313)
Q Consensus 105 ~~Geiv~l~GpNGsGKSTLl 124 (313)
+.|++..+.|.||+|||||-
T Consensus 12 ~~~~~alfFGLSGTGKTTLs 31 (313)
T d2olra1 12 EKGDVAVFFGLSGTGKTTLS 31 (313)
T ss_dssp TTSCEEEEECSTTSSHHHHH
T ss_pred CCCCEEEEEccCCCCcccce
Confidence 46889999999999999976
|
| >d1pjra1 c.37.1.19 (A:1-318) DEXX box DNA helicase {Bacillus stearothermophilus, PcrA [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: DEXX box DNA helicase species: Bacillus stearothermophilus, PcrA [TaxId: 1422]
Probab=89.30 E-value=0.071 Score=45.57 Aligned_cols=23 Identities=13% Similarity=0.278 Sum_probs=16.6
Q ss_pred EEEECCCCCcHHHHH-HHHHHHhc
Q 021362 110 VGLAGPPGAGKSTLA-AEVVRRIN 132 (313)
Q Consensus 110 v~l~GpNGsGKSTLl-k~l~gl~~ 132 (313)
+.|.|+.||||||.+ ..++-++.
T Consensus 27 ~lV~g~aGSGKTt~l~~ri~~ll~ 50 (318)
T d1pjra1 27 LLIMAGAGSGKTRVLTHRIAYLMA 50 (318)
T ss_dssp EEEEECTTSCHHHHHHHHHHHHHH
T ss_pred EEEEecCCccHHHHHHHHHHHHHH
Confidence 568899999999755 44555543
|
| >d1j3ba1 c.91.1.1 (A:212-529) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: PEP carboxykinase C-terminal domain domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) species: Thermus thermophilus [TaxId: 274]
Probab=88.97 E-value=0.09 Score=45.73 Aligned_cols=19 Identities=32% Similarity=0.489 Sum_probs=17.2
Q ss_pred CCcEEEEECCCCCcHHHHH
Q 021362 106 VKHIVGLAGPPGAGKSTLA 124 (313)
Q Consensus 106 ~Geiv~l~GpNGsGKSTLl 124 (313)
.|++..+.|.||+|||||-
T Consensus 13 ~~~valffGLSGTGKTTLs 31 (318)
T d1j3ba1 13 EGDVAVFFGLSGTGKTTLS 31 (318)
T ss_dssp TCCEEEEEECTTSCHHHHT
T ss_pred CCCEEEEEccCCCCccccc
Confidence 5789999999999999975
|
| >d2gnoa2 c.37.1.20 (A:11-208) gamma subunit of DNA polymerase III, N-domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: gamma subunit of DNA polymerase III, N-domain species: Thermotoga maritima [TaxId: 2336]
Probab=88.55 E-value=0.16 Score=40.93 Aligned_cols=27 Identities=7% Similarity=-0.006 Sum_probs=23.9
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHHHhc
Q 021362 106 VKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 106 ~Geiv~l~GpNGsGKSTLlk~l~gl~~ 132 (313)
.+--+.+-||+|+||||+++.++..+.
T Consensus 14 ~~~~~l~~G~~g~gk~~~a~~l~~~i~ 40 (198)
T d2gnoa2 14 EGISILINGEDLSYPREVSLELPEYVE 40 (198)
T ss_dssp SSEEEEEECSSSSHHHHHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHHh
Confidence 456788999999999999999999875
|
| >d1f60a3 c.37.1.8 (A:2-240) Elongation factor eEF-1alpha, N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor eEF-1alpha, N-terminal (G) domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=88.52 E-value=0.11 Score=43.19 Aligned_cols=23 Identities=26% Similarity=0.329 Sum_probs=19.5
Q ss_pred EEEEECCCCCcHHHHHHHHHHHh
Q 021362 109 IVGLAGPPGAGKSTLAAEVVRRI 131 (313)
Q Consensus 109 iv~l~GpNGsGKSTLlk~l~gl~ 131 (313)
-++|+|.-++|||||+..|.-..
T Consensus 8 Ni~iiGHvD~GKsTl~~~ll~~~ 30 (239)
T d1f60a3 8 NVVVIGHVDSGKSTTTGHLIYKC 30 (239)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHHc
Confidence 47999999999999998886543
|
| >d1lkxa_ c.37.1.9 (A:) Myosin S1, motor domain {Dictyostelium discoideum, class-I myosin MyoE [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Motor proteins domain: Myosin S1, motor domain species: Dictyostelium discoideum, class-I myosin MyoE [TaxId: 44689]
Probab=88.37 E-value=0.16 Score=48.93 Aligned_cols=29 Identities=21% Similarity=0.406 Sum_probs=25.6
Q ss_pred cCCCcEEEEECCCCCcHHHHHHHHHHHhc
Q 021362 104 VNVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 104 i~~Geiv~l~GpNGsGKSTLlk~l~gl~~ 132 (313)
-.+.+.+.|.|.+|||||+-.|.|...+.
T Consensus 83 ~~~~QsIiisGeSGsGKTe~~k~il~yL~ 111 (684)
T d1lkxa_ 83 SQENQCVIISGESGAGKTEASKKIMQFLT 111 (684)
T ss_dssp HCCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred cCCCeEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 35779999999999999999999988774
|
| >d1d0xa2 c.37.1.9 (A:2-33,A:80-759) Myosin S1, motor domain {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Motor proteins domain: Myosin S1, motor domain species: Dictyostelium discoideum [TaxId: 44689]
Probab=88.27 E-value=0.16 Score=49.10 Aligned_cols=28 Identities=21% Similarity=0.401 Sum_probs=25.4
Q ss_pred CCCcEEEEECCCCCcHHHHHHHHHHHhc
Q 021362 105 NVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 105 ~~Geiv~l~GpNGsGKSTLlk~l~gl~~ 132 (313)
.+.+.+.|.|.||||||+-.|.|...+.
T Consensus 123 ~~nQsIiisGeSGaGKTe~~k~il~yL~ 150 (712)
T d1d0xa2 123 RQNQSLLITGESGAGKTENTKKVIQYLA 150 (712)
T ss_dssp TCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCceEEEeCCCCCCHHHHHHHHHHHHH
Confidence 5789999999999999999999988774
|
| >d1ii2a1 c.91.1.1 (A:201-523) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Trypanosoma cruzi [TaxId: 5693]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: PEP carboxykinase C-terminal domain domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) species: Trypanosoma cruzi [TaxId: 5693]
Probab=87.84 E-value=0.13 Score=44.72 Aligned_cols=20 Identities=30% Similarity=0.483 Sum_probs=17.9
Q ss_pred CCCcEEEEECCCCCcHHHHH
Q 021362 105 NVKHIVGLAGPPGAGKSTLA 124 (313)
Q Consensus 105 ~~Geiv~l~GpNGsGKSTLl 124 (313)
+.|++..+.|-||+|||||-
T Consensus 12 ~~gd~alfFGLSGTGKTTLs 31 (323)
T d1ii2a1 12 KQGDVTVFFGLSGTGKTTLS 31 (323)
T ss_dssp TTCCEEEEECCTTSSHHHHH
T ss_pred CCCCEEEEEccCCCCcccce
Confidence 36788899999999999997
|
| >d1n0ua2 c.37.1.8 (A:3-343) Elongation factor 2 (eEF-2), N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor 2 (eEF-2), N-terminal (G) domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=87.65 E-value=0.11 Score=45.81 Aligned_cols=20 Identities=30% Similarity=0.428 Sum_probs=18.5
Q ss_pred EEEECCCCCcHHHHHHHHHH
Q 021362 110 VGLAGPPGAGKSTLAAEVVR 129 (313)
Q Consensus 110 v~l~GpNGsGKSTLlk~l~g 129 (313)
++|+|+-|+|||||+..|.-
T Consensus 20 I~iiGhvd~GKTTL~d~Ll~ 39 (341)
T d1n0ua2 20 MSVIAHVDHGKSTLTDSLVQ 39 (341)
T ss_dssp EEEECCGGGTHHHHHHHHHH
T ss_pred EEEEeCCCCcHHHHHHHHHH
Confidence 89999999999999999853
|
| >d1br2a2 c.37.1.9 (A:80-789) Myosin S1, motor domain {Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Motor proteins domain: Myosin S1, motor domain species: Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]
Probab=87.57 E-value=0.18 Score=48.60 Aligned_cols=28 Identities=21% Similarity=0.357 Sum_probs=25.0
Q ss_pred CCCcEEEEECCCCCcHHHHHHHHHHHhc
Q 021362 105 NVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 105 ~~Geiv~l~GpNGsGKSTLlk~l~gl~~ 132 (313)
++.+.+.|.|.+|||||+-.|.|...+.
T Consensus 89 ~~~Q~IiisGeSGaGKTe~~k~il~yL~ 116 (710)
T d1br2a2 89 REDQSILCTGESGAGKTENTKKVIQYLA 116 (710)
T ss_dssp TCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCcEEEEEeCCCCCHHHHHHHHHHHHH
Confidence 5679999999999999999999988773
|
| >d1r5ba3 c.37.1.8 (A:215-459) Eukaryotic peptide chain release factor ERF2, G domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Eukaryotic peptide chain release factor ERF2, G domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=87.39 E-value=0.1 Score=43.53 Aligned_cols=20 Identities=35% Similarity=0.489 Sum_probs=18.2
Q ss_pred EEEECCCCCcHHHHHHHHHH
Q 021362 110 VGLAGPPGAGKSTLAAEVVR 129 (313)
Q Consensus 110 v~l~GpNGsGKSTLlk~l~g 129 (313)
++|+|.-++|||||+..|..
T Consensus 27 i~iiGHVD~GKSTL~~~Ll~ 46 (245)
T d1r5ba3 27 IVFIGHVDAGKSTLGGNILF 46 (245)
T ss_dssp EEEEECGGGTHHHHHHHHHH
T ss_pred EEEEeeCCCCHHHHHHHHHH
Confidence 89999999999999998854
|
| >d2bmfa2 c.37.1.14 (A:178-482) Dengue virus helicase {Dengue virus type 2 [TaxId: 11060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: Dengue virus helicase species: Dengue virus type 2 [TaxId: 11060]
Probab=86.85 E-value=0.13 Score=43.23 Aligned_cols=28 Identities=36% Similarity=0.418 Sum_probs=21.5
Q ss_pred cCCCcEEEEECCCCCcHHH--HHHHHHHHh
Q 021362 104 VNVKHIVGLAGPPGAGKST--LAAEVVRRI 131 (313)
Q Consensus 104 i~~Geiv~l~GpNGsGKST--Llk~l~gl~ 131 (313)
+.+|+.+.|.+|.|||||+ |..++....
T Consensus 6 ~~~~~~~lv~~~TGsGKT~~~l~~~~~~~~ 35 (305)
T d2bmfa2 6 FRKKRLTIMDLHPGAGKTKRYLPAIVREAI 35 (305)
T ss_dssp SSTTCEEEECCCTTSSTTTTHHHHHHHHHH
T ss_pred hhcCCcEEEEECCCCCHHHHHHHHHHHHHH
Confidence 5689999999999999997 335554444
|
| >d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase YlqF species: Bacillus subtilis [TaxId: 1423]
Probab=86.75 E-value=0.18 Score=42.62 Aligned_cols=27 Identities=26% Similarity=0.277 Sum_probs=23.3
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHHHhc
Q 021362 106 VKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 106 ~Geiv~l~GpNGsGKSTLlk~l~gl~~ 132 (313)
.+-.++|+|-.-+|||||+|.|.|...
T Consensus 111 ~~~~v~vvG~PNvGKSsliN~L~~~~~ 137 (273)
T d1puja_ 111 RAIRALIIGIPNVGKSTLINRLAKKNI 137 (273)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHTSCC
T ss_pred CceEEEEEecCccchhhhhhhhhccce
Confidence 455699999999999999999998653
|
| >d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpB, AAA+ modules species: Thermus thermophilus [TaxId: 274]
Probab=86.52 E-value=0.16 Score=45.50 Aligned_cols=23 Identities=35% Similarity=0.615 Sum_probs=19.4
Q ss_pred EEEECCCCCcHHHHHHHHHHHhc
Q 021362 110 VGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 110 v~l~GpNGsGKSTLlk~l~gl~~ 132 (313)
+.|+|++|.|||+++.-++-.+.
T Consensus 46 ~llvG~~GvGKtaiv~~la~~i~ 68 (387)
T d1qvra2 46 PVLIGEPGVGKTAIVEGLAQRIV 68 (387)
T ss_dssp CEEEECTTSCHHHHHHHHHHHHH
T ss_pred CeEECCCCCCHHHHHHHHHHHHH
Confidence 57899999999999988876553
|
| >d2mysa2 c.37.1.9 (A:4-33,A:80-843) Myosin S1, motor domain {Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Motor proteins domain: Myosin S1, motor domain species: Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]
Probab=86.28 E-value=0.22 Score=48.67 Aligned_cols=28 Identities=21% Similarity=0.382 Sum_probs=25.3
Q ss_pred CCCcEEEEECCCCCcHHHHHHHHHHHhc
Q 021362 105 NVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 105 ~~Geiv~l~GpNGsGKSTLlk~l~gl~~ 132 (313)
.+.+.+.|.|.||||||+-.|.|...+.
T Consensus 121 ~~~QsIiisGeSGaGKTe~~K~il~yL~ 148 (794)
T d2mysa2 121 RENQSILITGESGAGKTVNTKRVIQYFA 148 (794)
T ss_dssp TCCEEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 5688999999999999999999988874
|
| >d1ny5a2 c.37.1.20 (A:138-384) Transcriptional activator sigm54 (NtrC1), C-terminal domain {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Transcriptional activator sigm54 (NtrC1), C-terminal domain species: Aquifex aeolicus [TaxId: 63363]
Probab=86.19 E-value=0.19 Score=41.89 Aligned_cols=28 Identities=21% Similarity=0.287 Sum_probs=23.0
Q ss_pred CCCcEEEEECCCCCcHHHHHHHHHHHhc
Q 021362 105 NVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 105 ~~Geiv~l~GpNGsGKSTLlk~l~gl~~ 132 (313)
..+.=|.|.|+.|+||+++.+.|...-.
T Consensus 21 ~~~~pvlI~Ge~GtGK~~~A~~ih~~s~ 48 (247)
T d1ny5a2 21 CAECPVLITGESGVGKEVVARLIHKLSD 48 (247)
T ss_dssp TCCSCEEEECSTTSSHHHHHHHHHHHST
T ss_pred CCCCCEEEECCCCcCHHHHHHHHHHhcC
Confidence 3455678999999999999999987653
|
| >d2b8ta1 c.37.1.24 (A:11-149) Thymidine kinase, TK1, N-terminal domain {Ureaplasma urealyticum [TaxId: 2130]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Type II thymidine kinase domain: Thymidine kinase, TK1, N-terminal domain species: Ureaplasma urealyticum [TaxId: 2130]
Probab=85.85 E-value=0.52 Score=35.56 Aligned_cols=25 Identities=32% Similarity=0.293 Sum_probs=20.7
Q ss_pred CcEEEEECCCCCcHHH-HHHHHHHHh
Q 021362 107 KHIVGLAGPPGAGKST-LAAEVVRRI 131 (313)
Q Consensus 107 Geiv~l~GpNGsGKST-Llk~l~gl~ 131 (313)
|.+..|+||=.||||| |++.+....
T Consensus 2 G~L~~i~GpMfsGKTteLi~~~~~~~ 27 (139)
T d2b8ta1 2 GWIEFITGPMFAGKTAELIRRLHRLE 27 (139)
T ss_dssp CEEEEEECSTTSCHHHHHHHHHHHHH
T ss_pred cEEEEEEccccCHHHHHHHHHHHHHH
Confidence 6788899999999999 777766554
|
| >d1kk8a2 c.37.1.9 (A:1-28,A:77-837) Myosin S1, motor domain {Bay scallop (Aequipecten irradians) [TaxId: 31199]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Motor proteins domain: Myosin S1, motor domain species: Bay scallop (Aequipecten irradians) [TaxId: 31199]
Probab=85.59 E-value=0.24 Score=48.41 Aligned_cols=28 Identities=21% Similarity=0.337 Sum_probs=25.0
Q ss_pred CCCcEEEEECCCCCcHHHHHHHHHHHhc
Q 021362 105 NVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 105 ~~Geiv~l~GpNGsGKSTLlk~l~gl~~ 132 (313)
.+.+.+.|.|.||||||.-.|.|...+.
T Consensus 119 ~~nQ~IiisGESGaGKTe~~K~il~yL~ 146 (789)
T d1kk8a2 119 RENQSCLITGESGAGKTENTKKVIMYLA 146 (789)
T ss_dssp TSEEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCcEEEEEeCCCCCHHHHHHHHHHHHH
Confidence 4679999999999999999999988874
|
| >d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: HCV helicase domain species: Human hepatitis C virus (HCV), different isolates [TaxId: 11103]
Probab=85.45 E-value=0.19 Score=37.17 Aligned_cols=20 Identities=35% Similarity=0.511 Sum_probs=16.2
Q ss_pred CCcEEEEECCCCCcHHHHHH
Q 021362 106 VKHIVGLAGPPGAGKSTLAA 125 (313)
Q Consensus 106 ~Geiv~l~GpNGsGKSTLlk 125 (313)
.-+...|.+|-|||||+++-
T Consensus 7 ~~~~~ll~apTGsGKT~~~~ 26 (136)
T d1a1va1 7 SFQVAHLHAPTGSGKSTKVP 26 (136)
T ss_dssp SCEEEEEECCTTSCTTTHHH
T ss_pred CCCEEEEEeCCCCCHHHHHH
Confidence 44667789999999998763
|
| >d1w7ja2 c.37.1.9 (A:63-792) Myosin S1, motor domain {Chicken (Gallus gallus), Va isoform [TaxId: 9031]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Motor proteins domain: Myosin S1, motor domain species: Chicken (Gallus gallus), Va isoform [TaxId: 9031]
Probab=85.16 E-value=0.29 Score=47.28 Aligned_cols=29 Identities=24% Similarity=0.312 Sum_probs=25.8
Q ss_pred cCCCcEEEEECCCCCcHHHHHHHHHHHhc
Q 021362 104 VNVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 104 i~~Geiv~l~GpNGsGKSTLlk~l~gl~~ 132 (313)
-.+.+.+.|.|.||||||+-.|.|...+.
T Consensus 91 ~~~~Q~IiisGeSGsGKTe~~k~il~~l~ 119 (730)
T d1w7ja2 91 DERNQSIIVSGESGAGKTVSAKYAMRYFA 119 (730)
T ss_dssp HTCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred hCCCeEEEEEeCCCCCHHHHHHHHHHHHH
Confidence 35789999999999999999999998874
|
| >d1gkub1 c.37.1.16 (B:1-250) Helicase-like "domain" of reverse gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Helicase-like "domain" of reverse gyrase domain: Helicase-like "domain" of reverse gyrase species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=82.40 E-value=0.3 Score=39.81 Aligned_cols=26 Identities=19% Similarity=0.351 Sum_probs=19.7
Q ss_pred cCCCcEEEEECCCCCcHHHHHHHHHH
Q 021362 104 VNVKHIVGLAGPPGAGKSTLAAEVVR 129 (313)
Q Consensus 104 i~~Geiv~l~GpNGsGKSTLlk~l~g 129 (313)
+-.|+-+.|++|.|+|||+..-+.+-
T Consensus 55 ~l~g~~~~i~apTGsGKT~~~~~~~~ 80 (237)
T d1gkub1 55 ILRKESFAATAPTGVGKTSFGLAMSL 80 (237)
T ss_dssp HHTTCCEECCCCBTSCSHHHHHHHHH
T ss_pred HHCCCCEEEEecCCChHHHHHHHHHH
Confidence 34678888999999999986544443
|
| >d2p6ra3 c.37.1.19 (A:1-202) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Hel308 helicase species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=81.69 E-value=0.4 Score=37.94 Aligned_cols=20 Identities=40% Similarity=0.333 Sum_probs=16.0
Q ss_pred CCCcEEEEECCCCCcHHHHH
Q 021362 105 NVKHIVGLAGPPGAGKSTLA 124 (313)
Q Consensus 105 ~~Geiv~l~GpNGsGKSTLl 124 (313)
..|.-+.|.+|.|||||+..
T Consensus 38 ~~~~~~il~apTGsGKT~~a 57 (202)
T d2p6ra3 38 FSGKNLLLAMPTAAGKTLLA 57 (202)
T ss_dssp TTCSCEEEECSSHHHHHHHH
T ss_pred HcCCCEEEEcCCCCchhHHH
Confidence 35666779999999999864
|
| >d1xbta1 c.37.1.24 (A:18-150) Thymidine kinase, TK1, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Type II thymidine kinase domain: Thymidine kinase, TK1, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=80.53 E-value=0.5 Score=35.36 Aligned_cols=26 Identities=38% Similarity=0.368 Sum_probs=20.7
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHHHh
Q 021362 106 VKHIVGLAGPPGAGKSTLAAEVVRRI 131 (313)
Q Consensus 106 ~Geiv~l~GpNGsGKSTLlk~l~gl~ 131 (313)
+|.+..|+||=.|||||-|=..+..+
T Consensus 1 ~G~L~li~GpMfsGKTt~Li~~~~~~ 26 (133)
T d1xbta1 1 RGQIQVILGPMFSGKSTELMRRVRRF 26 (133)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CcEEEEEEecccCHHHHHHHHHHHHH
Confidence 58899999999999999765444444
|
| >d1g3qa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Cell division regulator MinD species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=80.28 E-value=0.66 Score=37.05 Aligned_cols=26 Identities=27% Similarity=0.544 Sum_probs=22.4
Q ss_pred CcEEEEE-CCCCCcHHHHHHHHHHHhc
Q 021362 107 KHIVGLA-GPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 107 Geiv~l~-GpNGsGKSTLlk~l~gl~~ 132 (313)
|.++++. +.-|+||||+.-.|+..+.
T Consensus 2 ~~vIav~~~kGGvGKTtia~nLA~~la 28 (237)
T d1g3qa_ 2 GRIISIVSGKGGTGKTTVTANLSVALG 28 (237)
T ss_dssp CEEEEEECSSTTSSHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCcHHHHHHHHHHHHH
Confidence 5788888 6789999999999998885
|