Citrus Sinensis ID: 021377

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310---
Protein Sequence
MSSLSILMPSPVSFFFSVPSYSTERPQLTFSILCSFFLLSVFGCSSQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVTFYKGPPLIGELSHSGSPRRLLLSPQLSWILGGFFLAAEAFMNSAWFILQALILRKFAAVLIIMFYLFFFNTILSTAFALIVVSEPSDWKLGLDIGLVAVLYSAVIGTGFRVGLCTWCLSRTGPLYVSMFKPLAIVFSIVMDVVIVGDAFCLGSLIGAMIIVAGFYAVMWGKSKEEKTTEDCGLGSVNSSREKVPLLQNRIEEN
Secondary Structure (PSIPRED)
cHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHcHHHHHHHHHHHHHHcccccccccccHHHHcHHHEEccEEEEEEEccccccccccccccccccccccccccEEEcEEHHHHHccHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHccHHHHHHHHHHHHccccEEEEccccHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHEEccccHHHccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHEEEEEHHHHHHHHHHHHHHccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHcccccEEEcccHHHHHHHHHHHHHHHHHHHHHHHHHHccccEEEEcHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHcccccHHHccccccccccccccccccccc
Coil and Loop (DISEMBL)
msslsilmpspvsfffsvpsysterpqlTFSILCSFFLLsvfgcssqIFSFVgiqyssptlSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFvvtfykgppligelshsgsprrlllspqlswilGGFFLAAEAFMNSAWFILQALILRKFAAVLIIMFYLFFFNTILSTAFALIVvsepsdwklglDIGLVAVLYSAVIGTGFRVGLCTWclsrtgplyvsmfkPLAIVFSIVMDVVIVGDAFCLGSLIGAMIIVAGFYAVMwgkskeekttedcglgsvnssrekvpllqnrieen
Flexible Loop (DISEMBL)
msslsilmpspvSFFFSVPSYSTERPQLTFSILCSFFLLSVFGCSSQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVTFYKGPPLIGELSHSGSPRRLLLSPQLSWILGGFFLAAEAFMNSAWFILQALILRKFAAVLIIMFYLFFFNTILSTAFALIVVSEPSDWKLGLDIGLVAVLYSAVIGTGFRVGLCTWCLSRTGPLYVSMFKPLAIVFSIVMDVVIVGDAFCLGSLIGAMIIVAGFYAVMWGKSKEEkttedcglgsvnssrekvpllqnrieen
Low Complexity Region (SEG)
MSSLSILMpspvsfffsvpsYSTERPQLTFSILCSFFLLSVFGCSSQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVTFYKGPPLIGElshsgsprrlllspqlsWILGGFFLAAEAFMNSAWFILQALILRKFAAVLIIMFYLFFFNTILSTAFALIVVSEPSDWKLGLDIGLVAVLYSAVIGTGFRVGLCTWCLSRTGPLYVSMFKPLAIVFSIVMDVVIVGDAFCLGSLIGAMIIVAGFYAVMWGKSKEEKTTEDCGLGSVNSSREKVPLLQNRIEEN
Disordered region (IsUnstruct)
**********PVSFFFSVPSYSTERPQLTFSILCSFFLLSVFGCSSQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVTFYKGPPLIGELSHSGSPRRLLLSPQLSWILGGFFLAAEAFMNSAWFILQALILRKFAAVLIIMFYLFFFNTILSTAFALIVVSEPSDWKLGLDIGLVAVLYSAVIGTGFRVGLCTWCLSRTGPLYVSMFKPLAIVFSIVMDVVIVGDAFCLGSLIGAMIIVAGFYAVMWG*********************************
Disordered Region (DISOPRED)
MSSLSILMPSPVSFFFSVPSYSTERPQLTFSILCSFFLLSVFGCSSQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVTFYKGPPLI********************ILGGFFLAAEAFMNSAWFILQALILRKFAAVLIIMFYLFFFNTILSTAFALIVVSEPSDWKLGLDIGLVAVLYSAVIGTGFRVGLCTWCLSRTGPLYVSMFKPLAIVFSIVMDVVIVGDAFCLGSLIGAMIIVAGFYAVMW**********************************
Disordered Region (DISEMBL)
MSSLSILMPSPVSFFFSVPSYSTERPQLTFSILCSFFLLSVFGCSSQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVTFYKGPPLIGELSHSGSPRRLLLSPQLSWILGGFFLAAEAFMNSAWFILQALILRKFAAVLIIMFYLFFFNTILSTAFALIVVSEPSDWKLGLDIGLVAVLYSAVIGTGFRVGLCTWCLSRTGPLYVSMFKPLAIVFSIVMDVVIVGDAFCLGSLIGAMIIVAGFYAVMWGKS*************VNSSREKVPLLQNRIEEN
Disordered Region (DISPRO)
MSSLSILMPSPVSFFFSVPSYSTERPQLTFSILCSFFLLSVFGCSSQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVTFYKGPPLIGEL**************LSWILGGFFLAAEAFMNSAWFILQALILRKFAAVLIIMFYLFFFNTILSTAFALIVVSEPSDWKLGLDIGLVAVLYSAVIGTGFRVGLCTWCLSRTGPLYVSMFKPLAIVFSIVMDVVIVGDAFCLGSLIGAMIIVAGFYAVMWGKS*******************************
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
oooHHHHHHHHHHHHHHHHHHHHiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiHHHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSSLSILMPSPVSFFFSVPSYSTERPQLTFSILCSFFLLSVFGCSSQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVTFYKGPPLIGELSHSGSPRRLLLSPQLSWILGGFFLAAEAFMNSAWFILQALILRKFAAVLIIMFYLFFFNTILSTAFALIVVSEPSDWKLGLDIGLVAVLYSAVIGTGFRVGLCTWCLSRTGPLYVSMFKPLAIVFSIVMDVVIVGDAFCLGSLIGAMIIVAGFYAVMWGKSKEEKTTEDCGLGSVNSSREKVPLLQNRIEEN
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	313	2.2.26 [Sep-21-2011]
Q94JU2	367	WAT1-related protein At3g	yes	no	0.888	0.757	0.414	1e-54
Q9FL08	368	WAT1-related protein At5g	no	no	0.958	0.815	0.380	3e-52
Q945L4	339	WAT1-related protein At5g	no	no	0.875	0.808	0.385	2e-48
F4KHA8	370	WAT1-related protein At5g	no	no	0.936	0.791	0.365	2e-47
Q8VYZ7	360	WAT1-related protein At3g	no	no	0.865	0.752	0.384	3e-46
Q9LRS5	353	WAT1-related protein At3g	no	no	0.884	0.784	0.388	5e-46
Q56X95	355	WAT1-related protein At3g	no	no	0.843	0.743	0.365	7e-46
Q9LV20	383	WAT1-related protein At3g	no	no	0.891	0.728	0.348	6e-44
F4IYZ0	358	WAT1-related protein At3g	no	no	0.878	0.768	0.367	7e-43
F4JK59	347	WAT1-related protein At4g	no	no	0.875	0.789	0.371	1e-42

>sp|Q94JU2|WTR18_ARATH WAT1-related protein At3g28050 OS=Arabidopsis thaliana GN=At3g28050 PE=2 SV=1

 Score =  213 bits (543), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 123/297 (41%), Positives = 178/297 (59%), Gaps = 19/297 (6%)

Query: 26  PQLTFSILCSFFLLSVFGCSSQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKL 85
           P + FSIL    LL + GC S I  + GI YSSPTL++A+ NL PAFTF+LA++FR+E +
Sbjct: 69  PPMNFSILYKIVLLGIIGCCSNIMGYTGINYSSPTLASAISNLTPAFTFLLAVVFRMESV 128

Query: 86  NWENKSSQAKSLGTFASIGGAFVVTFYKGPPLIGELSHSGSPRRLLLSPQLSWILGGFFL 145
           +++  SS AK LGT  SIGGAF+VT Y GP +I +   S S R    +P   WILG  FL
Sbjct: 129 SFKRTSSVAKMLGTVVSIGGAFIVTLYNGPVVIAKSPPSVSLRSQSTNPN--WILGAGFL 186

Query: 146 AAEAFMNSAWFILQALILRKFAAVLIIMFYLFFFNTILSTAFALIVV-SEPSD---WKLG 201
           A E F    W+I+Q  I+R++ A   +   + F++  +S   AL+ + +E +D   WK+ 
Sbjct: 187 AVEYFCVPLWYIVQTQIMREYPAEFTV---VCFYSIGVSFWTALVTLFTEGNDLGAWKIK 243

Query: 202 LDIGLVAVLYSAVIGTGFRVGLCTWCLSRTGPLYVSMFKPLAIVFSIVMDVVIVGDAFCL 261
            +I LV+++ S + G+     + TW L   GPL+V+MFKPL+I  ++ M V+ + D+  +
Sbjct: 244 PNIALVSIVCSGLFGSCINNTIHTWALRIKGPLFVAMFKPLSIAIAVAMGVIFLRDSLYI 303

Query: 262 GSLIGAMIIVAGFYAVMWGKSKEEKTTEDCGLGSVNSSRE----------KVPLLQN 308
           GSLIGA +I  GFY VMWGK+KE    ED    +   + E          K PLL++
Sbjct: 304 GSLIGATVITIGFYTVMWGKAKEVALVEDDNKANHEEANEADLDSPSGSQKAPLLES 360

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FL08|WTR42_ARATH WAT1-related protein At5g40240 OS=Arabidopsis thaliana GN=At5g40240 PE=2 SV=1

 Score =  205 bits (522), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 120/315 (38%), Positives = 176/315 (55%), Gaps = 15/315 (4%)

Query: 4   LSILMPSPVSFFFSVPSYSTERPQLTFSILCSFFLLSVFGCSSQIFSFVGIQYSSPTLST 63
           +S L+  P+S  F     S   P     +    FLL + G  SQI    GI YSSPTL++
Sbjct: 58  VSTLLLLPLSVIFG---RSRRLPAAKSPLFFKIFLLGLVGFMSQIAGCKGIAYSSPTLAS 114

Query: 64  AMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVTFYKGPPLIGELSH 123
           A+ NL PAFTF LA+IFR+E++   + ++QAK +G   SI GA VV  YKGP ++   S 
Sbjct: 115 AISNLTPAFTFTLAVIFRMEQVRLRSSATQAKIIGAILSISGALVVVLYKGPQVLASASF 174

Query: 124 SGSPRRLLLSPQL-----SWILGGFFLAAEAFMNSAWFILQALILRKFAAVLIIMFYLFF 178
           +     + L  QL     SWI+GG  LA++ F+ S W+ILQ  ++  +   + ++F+   
Sbjct: 175 TTVLPTVTLHQQLTSIESSWIIGGLLLASQYFLISVWYILQTRVMEVYPEEITVVFFYNL 234

Query: 179 FNTILSTAFALIVVSEPSDWKLGLDIGLVAVLYSAVIGTGFRVGLCTWCLSRTGPLYVSM 238
           F T++S    L   S  + W L  DI L A++YS V  + F     TW L   GP+Y+S+
Sbjct: 235 FATLISVPVCLFAESNLTSWVLKPDISLAAIIYSGVFVSLFSALTHTWGLHLKGPVYISL 294

Query: 239 FKPLAIVFSIVMDVVIVGDAFCLGSLIGAMIIVAGFYAVMWGKSKEEKTTEDCGLGSVNS 298
           F+PL+I  ++ M  + +GDA  LGS+IG+MI+  GFY V+WGK++E+      G      
Sbjct: 295 FRPLSIAIAVAMGAIFLGDALHLGSVIGSMILCIGFYTVIWGKAREDTIKTVAG------ 348

Query: 299 SREKVPLLQNRIEEN 313
             E+ PLL   I E+
Sbjct: 349 -SEQSPLLLTHIIED 362

Arabidopsis thaliana (taxid: 3702)

>sp|Q945L4|WTR40_ARATH WAT1-related protein At5g40210 OS=Arabidopsis thaliana GN=At5g40210 PE=2 SV=1

 Score =  192 bits (488), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 114/296 (38%), Positives = 175/296 (59%), Gaps = 22/296 (7%)

Query: 15  FFSVPSYSTERPQLTFSILCSFFLLSVFGCSSQIFSFVGIQYSSPTLSTAMLNLIPAFTF 74
           FFS  S S   P LTFSILC+  +L +   + QI  + GI+YSSPTLS+AM N+ PAFTF
Sbjct: 61  FFSFRSRSL--PPLTFSILCNMGILGLIASAFQILGYNGIKYSSPTLSSAMSNVNPAFTF 118

Query: 75  VLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVTFYKGPPLIGELSHSGSPRRLLLSP 134
           +LA++FR+E ++   KSS AK LGT  SI GA VVT Y GP              +L+S 
Sbjct: 119 ILAVVFRMENISLGKKSSVAKVLGTILSIIGALVVTLYHGP--------------MLMSS 164

Query: 135 QLSWILGGFFLAAEAFMNSAWFILQALILRKF-AAVLIIMFYLFFFNTILSTAFALIVVS 193
              WI+GG  LA +  + S  +++ A  + ++ +AV++ + +      + +    L    
Sbjct: 165 HSDWIIGGGLLALQYILVSVSYLVMAHTMGRYPSAVVVTLVHNVCIAVVCAFVSLLAEKD 224

Query: 194 EPSDWKLGLDIGLVAVLYSAVIGTGFRVGLCTWCLSRTGPLYVSMFKPLAIVFSIVMDVV 253
            P  W +  DI L+ V+ + ++ +G+ V + TW +S  GP+Y+SMFKPL+I+ + V   +
Sbjct: 225 NPKAWVIRFDITLITVVATGILNSGYYV-IHTWAVSHKGPVYLSMFKPLSILIAAVSTFI 283

Query: 254 IVGDAFCLGSLIGAMIIVAGFYAVMWGKSKEEKTTEDCGLGSVNSS-REKVPLLQN 308
            +G++  LGS++G ++I  GFY V+WGK+KE+K      +G++ SS     PLL N
Sbjct: 284 FLGESLYLGSVMGGILISIGFYMVLWGKAKEDKVDI---IGAIESSPSHNAPLLDN 336

Arabidopsis thaliana (taxid: 3702)

>sp|F4KHA8|WTR41_ARATH WAT1-related protein At5g40230 OS=Arabidopsis thaliana GN=At5g40230 PE=2 SV=1

 Score =  189 bits (480), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 113/309 (36%), Positives = 174/309 (56%), Gaps = 16/309 (5%)

Query: 11  PVSFFFSVPSYSTERPQLTFSILCSFFLLSVFGCSSQIFSFVGIQYSSPTLSTAMLNLIP 70
           P+S  F     S   P     +  + FLL++ G  S I    GI+YSSPTL++A+ NL P
Sbjct: 66  PLSLIFG---RSKRLPSAKTPVFFNIFLLALVGFMSLIVGCKGIEYSSPTLASAISNLTP 122

Query: 71  AFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVTFYKGPPLIGELSHSGSPRRL 130
           AFTF LA+IFR+E++   + ++QAK +GT  SI GA VV  YKGP ++ + S +     +
Sbjct: 123 AFTFTLAVIFRMEQIVLRSSATQAKIIGTIVSISGALVVILYKGPKVLTDASLTPPSPTI 182

Query: 131 LLSPQL-----SWILGGFFLAAEAFMNSAWFILQALILRKFAAVLIIMFYLFFFNTILST 185
            L   L     SWI+GG  LA +  + S W+ILQ  ++  +   + ++F      T++S 
Sbjct: 183 SLYQHLTSFDSSWIIGGLLLATQYLLVSVWYILQTRVMELYPEEITVVFLYNLCATLISA 242

Query: 186 AFALIVVSEPSDWKLGLDIGLVAVLYSAVIGTGFRVGLCTWCLSRTGPLYVSMFKPLAIV 245
              L    + + + L   + L +V+YS  + + F   + TW L   GP+Y+S+FKPL+IV
Sbjct: 243 PVCLFAEKDLNSFILKPGVSLASVMYSGGLVSSFGSVIHTWGLHLKGPVYISLFKPLSIV 302

Query: 246 FSIVMDVVIVGDAFCLGSLIGAMIIVAGFYAVMWGKSKEEKTTEDCGLGSVNSSREKVPL 305
            ++ M V+ +GDA  LGS+IG++I+  GFY V+WGK++E+      G        E+ PL
Sbjct: 303 IAVAMGVMFLGDALYLGSVIGSLILSLGFYTVIWGKAREDSIKTVAG-------TEQSPL 355

Query: 306 L-QNRIEEN 313
           L  + IEE 
Sbjct: 356 LPSHTIEEE 364

Arabidopsis thaliana (taxid: 3702)

>sp|Q8VYZ7|WTR20_ARATH WAT1-related protein At3g28070 OS=Arabidopsis thaliana GN=At3g28070 PE=2 SV=1

 Score =  185 bits (470), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 112/291 (38%), Positives = 169/291 (58%), Gaps = 20/291 (6%)

Query: 32  ILCSFFLLSVFGCSSQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKS 91
           IL    LL   G    I  ++GI+YSSPTL++A+ N+ PA TF+LAIIFR+EK++++ +S
Sbjct: 80  ILSKIGLLGFLGSMYVITGYIGIEYSSPTLASAINNITPALTFILAIIFRMEKVSFKERS 139

Query: 92  SQAKSLGTFASIGGAFVVTFYKGPPLIGELSHSGSPRRL---LLSPQLS-----WILGGF 143
           S AK +GT  S+ GA VV FY GP     +  + SP  +     SP LS     W++GG 
Sbjct: 140 SLAKLMGTILSLIGALVVIFYHGP----RVFLASSPPYVNFRQFSPPLSSSNSDWLIGGA 195

Query: 144 FLAAEAFMNSAWFILQALILRKFAAVLIIMFYLFFFNTILSTAFALIV-VSEPSDWKLGL 202
            L  +    S  FILQA I+  + A   + F      +I+++   L+V  + PS W +  
Sbjct: 196 LLTMQGIFVSVSFILQAHIMSVYPAAFRVSFLYTVCVSIVTSTIGLVVEKNNPSVWIIHF 255

Query: 203 DIGLVAVLYSAVIGTGFRVGLCTWCLSRTGPLYVSMFKPLAIVFSIVMDVVIVGDAFCLG 262
           DI L+ ++  A++ + + V + +W +   GPLY+++FKPL+I+ ++VM  + + D+  LG
Sbjct: 256 DITLITIVTMAIVTSVYYV-IHSWTVRHKGPLYLAIFKPLSILIAVVMGAIFLNDSLYLG 314

Query: 263 SLIGAMIIVAGFYAVMWGKSKEEKTTEDCGLGSVNSSREKVPLLQNRIEEN 313
            LIG ++I  GFYAVMWGK+ EEK           S +EK PLL NR  + 
Sbjct: 315 CLIGGILITLGFYAVMWGKANEEKDQLSF------SEKEKTPLLLNRKNDQ 359

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LRS5|WTR22_ARATH WAT1-related protein At3g28100 OS=Arabidopsis thaliana GN=At3g28100 PE=2 SV=1

 Score =  185 bits (469), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 115/296 (38%), Positives = 172/296 (58%), Gaps = 19/296 (6%)

Query: 22  STERPQLTFSILCSFFLLSVFGCSSQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFR 81
           S   P L+ SIL    LL + G    I  ++GI+YSSPTL++A+ N+ PA TF+LAIIFR
Sbjct: 67  SRSLPPLSLSILSKIGLLGLLGSMYVITGYIGIEYSSPTLASAISNITPALTFILAIIFR 126

Query: 82  LEKLNWENKSSQAKSLGTFASIGGAFVVTFYKGPPLIGELSHSGSPRRL--------LLS 133
           +EK++++ +SS AK +GT  S+ GA VV  Y GP     +  + SP  +        L S
Sbjct: 127 MEKVSFKERSSVAKVMGTILSLIGALVVVLYHGP----RVFVASSPPYINFRQLSPPLSS 182

Query: 134 PQLSWILGGFFLAAEAFMNSAWFILQALILRKFAAVLIIMFYLFFFNTILSTAFALIV-V 192
               W++GG  L       S  FILQA I+  + A   + F      +I+++   L+V  
Sbjct: 183 SNSDWLIGGALLTIRDIFVSVSFILQAKIMSTYPAAFTVSFLYIVSVSIVTSMIGLVVEK 242

Query: 193 SEPSDWKLGLDIGLVAVLYSAVIGTGFRVGLCTWCLSRTGPLYVSMFKPLAIVFSIVMDV 252
           + PS W +  DI L+ ++  A+I + + V + +W +   GPLY+++FKPL+I+ ++VM  
Sbjct: 243 NNPSVWIIRFDITLITIVTMAIITSVYYV-IHSWTVRHKGPLYLAIFKPLSILIAVVMSA 301

Query: 253 VIVGDAFCLGSLIGAMIIVAGFYAVMWGKSKEEKTTEDCGLGSVNSSREKVPLLQN 308
           V + D+  LG LIG ++I  GFYAVMWGK+ EEK   D  L  + S +E+ PLL N
Sbjct: 302 VFLNDSLYLGCLIGGLLITLGFYAVMWGKANEEK---DQLL--LVSGKERTPLLLN 352

Arabidopsis thaliana (taxid: 3702)

>sp|Q56X95|WTR23_ARATH WAT1-related protein At3g28130 OS=Arabidopsis thaliana GN=At3g28130 PE=2 SV=1

 Score =  184 bits (467), Expect = 7e-46,   Method: Compositional matrix adjust.
 Identities = 107/293 (36%), Positives = 167/293 (56%), Gaps = 29/293 (9%)

Query: 34  CSFFLLSVFGCSSQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQ 93
           C   +L + G +  I  F+GI+YS+PTL++A+ N+ PA TF+LAIIFR+EK +++ KSS 
Sbjct: 78  CKIGVLGLLGSTYLITGFIGIEYSNPTLASAISNINPAITFILAIIFRMEKASFKEKSSV 137

Query: 94  AKSLGTFASIGGAFVVTFYKGPPLIGELSHSGSPRRLLLSPQL------------SWILG 141
           AK +GT  S+ GA VV  Y GP +    + S  P      PQL             WI+G
Sbjct: 138 AKMVGTIVSLVGALVVVLYHGPRV---FTPSSPPF-----PQLRQLLLPLSSSNSDWIIG 189

Query: 142 GFFLAAEAFMNSAWFILQALILRKFAAVLIIMFYLFFFNTILSTAFALIV-VSEPSDWKL 200
           G  LA +  +    FILQA I++ + A   + F+ F   +IL++   ++   + PS W +
Sbjct: 190 GCLLAIKDTLVPVAFILQAHIMKLYPAPFTVSFFYFLIASILTSLIGIVAEKNNPSIWII 249

Query: 201 GLDIGLVAVLYSAVIGTGFRVGLCTWCLSRTGPLYVSMFKPLAIVFSIVMDVVIVGDAFC 260
             DI LV ++   +   G+   +  W +   GP+Y+++F+PL+I+ +++M  + +GD+F 
Sbjct: 250 HFDITLVCIVVGGIFNPGYY-AIHLWAVRNKGPVYLAIFRPLSILIAVIMGAIFLGDSFY 308

Query: 261 LGSLIGAMIIVAGFYAVMWGKSKEEKTTEDCGLGSVNSSREKVPLLQNRIEEN 313
           LGSL+G ++I  GFY VMWGK+KE KT          S  E+ PLL   I++ 
Sbjct: 309 LGSLVGGILISLGFYTVMWGKAKEGKT-------QFLSLSEETPLLDENIDDR 354

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LV20|WTR17_ARATH WAT1-related protein At3g18200 OS=Arabidopsis thaliana GN=At3g18200 PE=2 SV=1

 Score =  178 bits (451), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 99/284 (34%), Positives = 162/284 (57%), Gaps = 5/284 (1%)

Query: 4   LSILMPSPVSFFFSVPSYSTERPQLTFSILCSFFLLSVFG-CSSQIFSFVGIQYSSPTLS 62
           L++L+  P ++FF       ERP LT S+L  FF L++ G  ++Q F  +G+ Y++PT +
Sbjct: 73  LALLLIGPFAYFFE----KKERPPLTISLLAQFFFLALIGITANQGFYLLGLYYATPTFA 128

Query: 63  TAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVTFYKGPPLIGELS 122
           +AM N +PA TF++A   RLE ++   K   AK LGT  SIGGA V+T Y+G P+  +  
Sbjct: 129 SAMQNSVPAITFIMACALRLEHIDLVRKHGVAKVLGTLVSIGGATVITLYRGFPIFDQGL 188

Query: 123 HSGSPRRLLLSPQLSWILGGFFLAAEAFMNSAWFILQALILRKFAAVLIIMFYLFFFNTI 182
           +      +      S  LG  +L       + W +LQA +L+++ A L +  +  FF  I
Sbjct: 189 NMQKEEVVGSDNSHSLTLGWLYLMGHCLSWAGWMVLQAPVLKQYPAKLTLTSFTCFFGLI 248

Query: 183 LSTAFALIVVSEPSDWKLGLDIGLVAVLYSAVIGTGFRVGLCTWCLSRTGPLYVSMFKPL 242
                AL V ++ ++W +     L  +LY+ +I +G  V L TWC+ ++GP++V++F+PL
Sbjct: 249 QFLVIALFVETDLNNWIIVSWEELFTILYAGIIASGLVVYLQTWCIYKSGPVFVAVFQPL 308

Query: 243 AIVFSIVMDVVIVGDAFCLGSLIGAMIIVAGFYAVMWGKSKEEK 286
             +    M  +I+GD    G ++GA+ I+ G Y V+WGK++E K
Sbjct: 309 QTLLVAAMAFLILGDQLYSGGIVGAVFIMLGLYLVLWGKNEERK 352

Arabidopsis thaliana (taxid: 3702)

>sp|F4IYZ0|WTR21_ARATH WAT1-related protein At3g28080 OS=Arabidopsis thaliana GN=At3g28080 PE=2 SV=1

 Score =  174 bits (442), Expect = 7e-43,   Method: Compositional matrix adjust.
 Identities = 108/294 (36%), Positives = 167/294 (56%), Gaps = 19/294 (6%)

Query: 22  STERPQLTFSILCSFFLLSVFGCSSQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFR 81
           S   P L+ SIL    LL   G    I   +GI+YS+PTL++A+ N++PA TF+LA+IFR
Sbjct: 67  SRSLPPLSASILSKIGLLGFLGSMYVITGGIGIEYSNPTLASAIGNIVPALTFILAVIFR 126

Query: 82  LEKLNWENKSSQAKSLGTFASIGGAFVVTFYKGPPLIGELSHSGSPRRL--------LLS 133
           +EK++++ +SS AK +GT  S+ GAFVV FY GP     +  + SP  L        L S
Sbjct: 127 MEKVSFKERSSVAKVMGTILSLIGAFVVIFYHGP----RVFVASSPPYLNFRQLSPPLSS 182

Query: 134 PQLSWILGGFFLAAEAFMNSAWFILQALILRKFAAVLIIMFYLFFFNTILSTAFALIV-V 192
            +  W++GG  L  +    S  FILQ  I+R++     +        +I+++   L+V  
Sbjct: 183 SKSDWLIGGAILTIQGIFVSVSFILQTHIMREYPEAFTVSILYILCISIVTSMIGLVVEK 242

Query: 193 SEPSDWKLGLDIGLVAVLYSAVIGTGFRVGLCTWCLSRTGPLYVSMFKPLAIVFSIVMDV 252
           + PS W +  DI L  ++ + +I + + V + +W +    PLY+++FKPL+I+ ++VM  
Sbjct: 243 NNPSIWIIHFDITLFTIVTTGIITSVYYV-IHSWAIRHKRPLYLAIFKPLSILIAVVMGT 301

Query: 253 VIVGDAFCLGSLIGAMIIVAGFYAVMWGKSKEEKTTEDCGLGSVNSSREKVPLL 306
           + + D+  LG LIG ++I  GFY VMWGK+ EEK           S +EK PLL
Sbjct: 302 IFLNDSLYLGCLIGGILITLGFYVVMWGKANEEKNKLLS-----FSGKEKTPLL 350

Arabidopsis thaliana (taxid: 3702)

>sp|F4JK59|WTR33_ARATH WAT1-related protein At4g15540 OS=Arabidopsis thaliana GN=At4g15540 PE=2 SV=1

 Score =  174 bits (440), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 107/288 (37%), Positives = 168/288 (58%), Gaps = 14/288 (4%)

Query: 26  PQLTFSILCSFFLLSVFGCSSQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKL 85
           P    S+    FLL++ G +S++    GI+YSSPTLS+A+ NL PAFTF+LAI FR+E++
Sbjct: 74  PTAKSSLFFKIFLLALLGLTSRVAGCKGIEYSSPTLSSAISNLTPAFTFILAIFFRMEQV 133

Query: 86  NWENKSSQAKSLGTFASIGGAFVVTFYKGPPLIGELSHSGSPRRLLLSPQLSWILGGFFL 145
              + ++QAK +GT  SI GA V+  YKGP L+   S +        S + SWI+GG  L
Sbjct: 134 MLRSSATQAKIIGTIVSISGALVIVLYKGPKLLVAASFT--------SFESSWIIGGLLL 185

Query: 146 AAEAFMNSAWFILQALILRKFAAVLIIMFYLFFFNTILSTAFALIVVSEPSDWKLGLDIG 205
             +  + S WFILQ  I+  +   + ++F      T++S    L+V  + + W+L     
Sbjct: 186 GLQFLLLSVWFILQTHIMEIYPEEIAVVFCYNLCATLISGTVCLLVEKDLNSWQLKPGFS 245

Query: 206 LVAVLYSAVIGTGFRVGLCTWCLSRTGPLYVSMFKPLAIVFSIVMDVVIVGDAFCLGSLI 265
           L +V+YS +  T     + TW L   GP+Y+S+FKPL+I  ++ M  + +GD   LGS+I
Sbjct: 246 LASVIYSGLFDTSLGSVIHTWGLHVKGPVYISLFKPLSIAIAVAMAAIFLGDTLHLGSVI 305

Query: 266 GAMIIVAGFYAVMWGKSKEEKTTEDCGLGSVNSSREKVPLLQNRIEEN 313
           G++I+  GFY V+WGK++E+ T       +V+ S + + L  +  EE+
Sbjct: 306 GSVILSFGFYTVIWGKAREDSTK------TVSDSEQSLLLPSHDREED 347

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	313
255581160	356	Auxin-induced protein 5NG4, putative [Ri	0.980	0.862	0.610	1e-102
225424736	346	PREDICTED: auxin-induced protein 5NG4 [V	0.923	0.835	0.554	2e-86
356497781	351	PREDICTED: LOW QUALITY PROTEIN: auxin-in	0.961	0.857	0.530	6e-84
356502002	351	PREDICTED: auxin-induced protein 5NG4-li	0.961	0.857	0.521	2e-83
296086518	356	unnamed protein product [Vitis vinifera]	0.955	0.839	0.542	1e-81
224099697	355	predicted protein [Populus trichocarpa]	0.961	0.847	0.511	8e-80
356497783	347	PREDICTED: auxin-induced protein 5NG4-li	0.942	0.850	0.501	2e-78
255581162	349	Auxin-induced protein 5NG4, putative [Ri	0.942	0.845	0.505	2e-78
224057230	355	predicted protein [Populus trichocarpa]	0.955	0.842	0.485	6e-78
147778659	335	hypothetical protein VITISV_034106 [Viti	0.846	0.791	0.560	2e-77

>gi|255581160|ref|XP_002531393.1| Auxin-induced protein 5NG4, putative [Ricinus communis] gi|223528986|gb|EEF30977.1| Auxin-induced protein 5NG4, putative [Ricinus communis]

 Score =  377 bits (968), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 190/311 (61%), Positives = 233/311 (74%), Gaps = 4/311 (1%)

Query: 2   SSLSILMPSPVSFFFSVPSYSTERPQLTFSILCSFFLLSVFGCSSQIFSFVGIQYSSPTL 61
            +LS L+  P SF      + ++R  L FS+LC FFLLSVFG  +QI  +VG+QYSSPTL
Sbjct: 49  DALSTLVLLPCSFII----HRSDRTPLDFSLLCKFFLLSVFGWCAQICGYVGLQYSSPTL 104

Query: 62  STAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVTFYKGPPLIGEL 121
            TAMLNLIPAFTF+LAIIFRLEKL+  +KSS AKSLGT  SI GAFVVTFY+GP + G  
Sbjct: 105 GTAMLNLIPAFTFILAIIFRLEKLDRRSKSSIAKSLGTIVSIAGAFVVTFYEGPTVFGIA 164

Query: 122 SHSGSPRRLLLSPQLSWILGGFFLAAEAFMNSAWFILQALILRKFAAVLIIMFYLFFFNT 181
           SH     +L  SPQ  W++G  FLAAEA M+SAW+ILQ  IL+KF AVLII+ YL FFNT
Sbjct: 165 SHIKESHQLFHSPQFFWMIGALFLAAEALMDSAWYILQTFILKKFPAVLIIICYLCFFNT 224

Query: 182 ILSTAFALIVVSEPSDWKLGLDIGLVAVLYSAVIGTGFRVGLCTWCLSRTGPLYVSMFKP 241
           +LS  FALIVV + + WK+  +IGL  +LY+AVIG  FR+ L  WCLSRTGPLYV++FKP
Sbjct: 225 VLSAIFALIVVEDRNSWKIKPNIGLATILYTAVIGLAFRISLVAWCLSRTGPLYVTLFKP 284

Query: 242 LAIVFSIVMDVVIVGDAFCLGSLIGAMIIVAGFYAVMWGKSKEEKTTEDCGLGSVNSSRE 301
           LAI+F+++MD +I+GD  CLGSLIGA+IIV GFY VMWGK+KEEK  +D  +GS  SS +
Sbjct: 285 LAIIFAVIMDAIILGDPLCLGSLIGAIIIVTGFYWVMWGKAKEEKAGDDSAVGSCESSSD 344

Query: 302 KVPLLQNRIEE 312
            VPLL +  EE
Sbjct: 345 NVPLLGDLAEE 355

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225424736|ref|XP_002266139.1| PREDICTED: auxin-induced protein 5NG4 [Vitis vinifera] gi|296086519|emb|CBI32108.3| unnamed protein product [Vitis vinifera]

 Score =  325 bits (832), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 167/301 (55%), Positives = 216/301 (71%), Gaps = 12/301 (3%)

Query: 11  PVSFFFSVPSYSTERPQLTFSILCSFFLLSVFGCSSQIFSFVGIQYSSPTLSTAMLNLIP 70
           P+S  F    + + RP LTFSILC FFLL++ GC +QIF + G+QYSSPTL +AMLNL+P
Sbjct: 55  PLSLLF----HRSPRPPLTFSILCRFFLLALIGCFAQIFGYAGVQYSSPTLGSAMLNLVP 110

Query: 71  AFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVTFYKGPPLIGELSHSGSPRRL 130
           AFTF+LA+I R+EKL  +  SS AKS+G   S+ GAFVVTFYKGPP++   S S S  ++
Sbjct: 111 AFTFILAVICRMEKLELKKSSSLAKSVGALVSVAGAFVVTFYKGPPIMFSSSFSDSSNQI 170

Query: 131 LLSPQLSWILGGFFLAAEAFMNSAWFILQALILRKFAAVLIIMFYLFFFNTILSTAFALI 190
             S Q  W+LGGF LA E+ + S W+ILQA IL+K  AVL I F+  FF +I+S A +L+
Sbjct: 171 F-SSQSHWVLGGFLLADESLLASMWYILQATILKKHPAVLTITFFYCFFISIISLAISLV 229

Query: 191 VVSEPSDWKLGLDIGLVAVLYSAVIGTGFRVGLCTWCLSRTGPLYVSMFKPLAIVFSIVM 250
              +PS W+L LD+GL+AVLYSA++G   R+ +CTWC+ R GPL+ SMFKPL IVF+ VM
Sbjct: 230 AERDPSAWRLKLDVGLLAVLYSAIVGNVIRISMCTWCVRRAGPLFCSMFKPLGIVFAFVM 289

Query: 251 DVVIVGDAFCLGSLIGAMIIVAGFYAVMWGKSKEEKTTEDCGLGSVNSSREKVPLLQNRI 310
            V+  GDA  LGSL+GA+IIV GFYAVMWGK+KE +       G +  SR KVPLLQN+ 
Sbjct: 290 GVIFSGDALHLGSLVGAIIIVTGFYAVMWGKAKEAEE------GRLECSR-KVPLLQNQT 342

Query: 311 E 311
           +
Sbjct: 343 D 343

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356497781|ref|XP_003517736.1| PREDICTED: LOW QUALITY PROTEIN: auxin-induced protein 5NG4-like [Glycine max]

 Score =  317 bits (811), Expect = 6e-84,   Method: Compositional matrix adjust.
 Identities = 163/307 (53%), Positives = 216/307 (70%), Gaps = 6/307 (1%)

Query: 3   SLSILMPSPVSFFFSVPSYSTERPQLTFSILCSFFLLSVFGCSSQIFSFVGIQYSSPTLS 62
           +LS ++  P + F     + +ERP LTFS LCSFFLL+ FG S QI ++VGI  SSPTL+
Sbjct: 50  ALSTILLLPFALFL----HRSERPPLTFSALCSFFLLAFFGSSGQIMAYVGIDLSSPTLA 105

Query: 63  TAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVTFYKGPPLIGELS 122
           +AMLNLIPAFTF+LA+IFR+E+++W++ SSQAK LGT  SI GAFVV  YKGPP+  +  
Sbjct: 106 SAMLNLIPAFTFILALIFRMEEVHWKHSSSQAKFLGTIVSIAGAFVVILYKGPPIF-KTH 164

Query: 123 HSGSPRRLLLSPQLSWILGGFFLAAEAFMNSAWFILQALILRKFAAVLIIMFYLFFFNTI 182
            S S  + L S QL+WILGG F A ++ + S W+I QA +  K+ AV  I+F+   F+TI
Sbjct: 165 LSNSSNKFLFSQQLNWILGGMFCAGDSIVCSLWYIYQASVAYKYPAVTTIVFFQLLFSTI 224

Query: 183 LSTAFALIVVSEPSDWKLGLDIGLVAVLYSAVIGTGFRVGLCTWCLSRTGPLYVSMFKPL 242
               FALIVV   ++W+L LDIGL+ ++Y A+  T  R  LCTWC+ + GPL+ SMFKP+
Sbjct: 225 QCGVFALIVVQXSNEWELKLDIGLIGIVYQAIAATLIRYILCTWCVLKAGPLFCSMFKPV 284

Query: 243 AIVFSIVMDVVIVGDAFCLGSLIGAMIIVAGFYAVMWGKSKEEKTTEDCGLGSVNSSREK 302
           AI+FS+ M  + +GD   LGSLIGA+IIV GFYAV+WGKS E+   E  G+ ++ SS   
Sbjct: 285 AIIFSVFMGAIFLGDDLSLGSLIGAVIIVIGFYAVLWGKSIEDNKIEK-GVENLESSCHN 343

Query: 303 VPLLQNR 309
           VPLLQNR
Sbjct: 344 VPLLQNR 350

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356502002|ref|XP_003519811.1| PREDICTED: auxin-induced protein 5NG4-like [Glycine max]

 Score =  315 bits (806), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 160/307 (52%), Positives = 214/307 (69%), Gaps = 6/307 (1%)

Query: 3   SLSILMPSPVSFFFSVPSYSTERPQLTFSILCSFFLLSVFGCSSQIFSFVGIQYSSPTLS 62
           +LS ++  P + F     + +ERP LTFS LC FFLL++FG S QI ++VGI  SS TL+
Sbjct: 50  ALSTILLLPFALFL----HRSERPPLTFSALCCFFLLAIFGSSGQIMAYVGIDLSSATLA 105

Query: 63  TAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVTFYKGPPLIGELS 122
           +AMLNLIPAFTF+LA+IFR+E+++W + SSQAK LGT  SIGGAFVV  YKGPP I +  
Sbjct: 106 SAMLNLIPAFTFILALIFRMEEVHWRHSSSQAKVLGTLISIGGAFVVILYKGPP-IFKTH 164

Query: 123 HSGSPRRLLLSPQLSWILGGFFLAAEAFMNSAWFILQALILRKFAAVLIIMFYLFFFNTI 182
            S S  +L  S Q++WILGG F   ++ + S W+I QA +  KF AV +I+F+   F+TI
Sbjct: 165 WSNSSNKLQFSQQINWILGGIFCVGDSIVCSLWYIYQASVAHKFPAVTVIVFFQLLFSTI 224

Query: 183 LSTAFALIVVSEPSDWKLGLDIGLVAVLYSAVIGTGFRVGLCTWCLSRTGPLYVSMFKPL 242
               FALI V +P++W+L  DIGL+ +LY A+  T  R  LCTWC+ + GPL+ SMFKP+
Sbjct: 225 QCAVFALIAVPDPTEWELKFDIGLIGILYQAIAATLIRYILCTWCVLKAGPLFCSMFKPV 284

Query: 243 AIVFSIVMDVVIVGDAFCLGSLIGAMIIVAGFYAVMWGKSKEEKTTEDCGLGSVNSSREK 302
           +I+F++ M  + +GD   LGSLIGA+IIV GFYAV+WGKS EE      G+ ++ SS   
Sbjct: 285 SIIFTVFMAAIFLGDDLSLGSLIGAVIIVIGFYAVLWGKSIEENKIVK-GVENLESSCHN 343

Query: 303 VPLLQNR 309
           VPLLQNR
Sbjct: 344 VPLLQNR 350

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296086518|emb|CBI32107.3| unnamed protein product [Vitis vinifera]

 Score =  308 bits (790), Expect = 1e-81,   Method: Compositional matrix adjust.
 Identities = 166/306 (54%), Positives = 214/306 (69%), Gaps = 7/306 (2%)

Query: 6   ILMPSPVSFFFSVPSYSTERPQLTFSILCSFFLLSVFGCSSQIFSFVGIQYSSPTLSTAM 65
           IL+PS + F      + + RPQLTFS+L  FFLL++ G  +QIF + GIQYSS TL TAM
Sbjct: 50  ILLPSCLLF------HRSPRPQLTFSLLSGFFLLALLGFFAQIFGYAGIQYSSATLGTAM 103

Query: 66  LNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVTFYKGPPLIGELSHSG 125
           LNL+P FTF+LAIIFR+E+L+W   SS AKS+GT  SI GAF+VTFYKG P++   S S 
Sbjct: 104 LNLVPGFTFILAIIFRMERLDWRG-SSMAKSMGTVVSIAGAFIVTFYKGSPILMTPSPSN 162

Query: 126 SPRRLLLSPQLSWILGGFFLAAEAFMNSAWFILQALILRKFAAVLIIMFYLFFFNTILST 185
            P +L LS Q +W+ GG  LAA+  M+SAW ILQA IL+K+ A LII FY  FF  I S 
Sbjct: 163 FPDQLFLSQQSNWVFGGLLLAADCVMSSAWLILQASILKKYPAELIINFYYCFFVAIQSA 222

Query: 186 AFALIVVSEPSDWKLGLDIGLVAVLYSAVIGTGFRVGLCTWCLSRTGPLYVSMFKPLAIV 245
           A +LI+   P  W L      +AV+YS V G  F+VG  TWC+ + GP++V+MFKP+ IV
Sbjct: 223 AASLIMERGPGAWSLKPSTRFIAVMYSGVFGYVFQVGAITWCVHQKGPVFVAMFKPVGIV 282

Query: 246 FSIVMDVVIVGDAFCLGSLIGAMIIVAGFYAVMWGKSKEEKTTEDCGLGSVNSSREKVPL 305
            ++ M V+ +GD F +GSLIGA +IV GFY+VMWGK+KEEK  ED G+ S+ S+ +K PL
Sbjct: 283 VAVAMGVIFLGDTFYMGSLIGATVIVIGFYSVMWGKAKEEKIDEDIGMRSLESTSQKAPL 342

Query: 306 LQNRIE 311
           LQN IE
Sbjct: 343 LQNYIE 348

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224099697|ref|XP_002311582.1| predicted protein [Populus trichocarpa] gi|222851402|gb|EEE88949.1| predicted protein [Populus trichocarpa]

 Score =  303 bits (775), Expect = 8e-80,   Method: Compositional matrix adjust.
 Identities = 160/313 (51%), Positives = 210/313 (67%), Gaps = 12/313 (3%)

Query: 6   ILMPSPVSFFFSVPSYSTERPQLTFSILCSFFLLSVFGCS-----SQIFSFVGIQYSSPT 60
           IL+PS  SFF     + +ERP LTF ILC FFLL +FG +       IF + GI  SS T
Sbjct: 50  ILLPS--SFFL----HRSERPPLTFPILCGFFLLGLFGYAILIYFDFIFGYAGINLSSAT 103

Query: 61  LSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVTFYKGPPLIGE 120
           L TAMLNLIP  TF+LA+ FR+EKL+W++ S+  KS GT  S+ GAF+V +YKGPPL+  
Sbjct: 104 LGTAMLNLIPGLTFILAVAFRMEKLDWKSSSALVKSTGTIVSVAGAFIVCYYKGPPLLMA 163

Query: 121 LSHSGSPRRLLLSPQLSWILGGFFLAAEAFMNSAWFILQALILRKFAAVLIIMFYLFFFN 180
            S S  P  LL S Q +WI+GG  LA +  M SAW I+QALIL+K+ A LI++F+  F  
Sbjct: 164 PSTSNLPHELL-SQQQNWIIGGLLLAVDCVMASAWLIIQALILKKYPAELIVVFFYCFSV 222

Query: 181 TILSTAFALIVVSEPSDWKLGLDIGLVAVLYSAVIGTGFRVGLCTWCLSRTGPLYVSMFK 240
           TILST   L +  +P  W L   +  +AV+YS V G+ F+VG+ TWCL +TGP++V+MFK
Sbjct: 223 TILSTIVCLFMERDPGAWSLKPTVRWIAVVYSGVFGSAFQVGVSTWCLHKTGPVFVAMFK 282

Query: 241 PLAIVFSIVMDVVIVGDAFCLGSLIGAMIIVAGFYAVMWGKSKEEKTTEDCGLGSVNSSR 300
           PL IV +  + ++ + D   LGSL+GA +IV GFY+VMWGK+KEEK   D G+ S  SS 
Sbjct: 283 PLGIVIAAAVSIICLRDTLYLGSLVGATVIVIGFYSVMWGKAKEEKVGVDDGVRSFESSS 342

Query: 301 EKVPLLQNRIEEN 313
           +KVPLLQ+  EE 
Sbjct: 343 QKVPLLQSHTEET 355

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356497783|ref|XP_003517737.1| PREDICTED: auxin-induced protein 5NG4-like [Glycine max]

 Score =  298 bits (764), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 154/307 (50%), Positives = 212/307 (69%), Gaps = 12/307 (3%)

Query: 3   SLSILMPSPVSFFFSVPSYSTERPQLTFSILCSFFLLSVFGCSSQIFSFVGIQYSSPTLS 62
           S SIL+P      F +  + +E P LT   L SFFLL++F  S+ I ++VGI+ SSPTL+
Sbjct: 52  SSSILLP------FVLFLHRSELPLLTVPALGSFFLLALFASSAHIMAYVGIELSSPTLA 105

Query: 63  TAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVTFYKGPPLIGELS 122
           +A+LN+IPAFTFVLA+IFR+E+++W   SSQAK LGT  SIGGAFVV  YKGPP+    S
Sbjct: 106 SAILNVIPAFTFVLALIFRMEEVHWRYFSSQAKVLGTIVSIGGAFVVILYKGPPIFRTHS 165

Query: 123 HSGSPRRLLLSPQLSWILGGFFLAAEAFMNSAWFILQALILRKFAAVLIIMFYLFFFNTI 182
            S +  +L  S Q +WILGG FL A++F++S W+I QA + +K+ AV +I+F+ F F+TI
Sbjct: 166 -SYTSNKLQFSAQPNWILGGIFLVADSFLSSMWYIYQASVAKKYPAVTVIVFFQFLFSTI 224

Query: 183 LSTAFALIVVSEPSDWKLGLDIGLVAVLYSAVIGTGFRVGLCTWCLSRTGPLYVSMFKPL 242
               FALI V +P++W+L  D GL  +LY A++ T  R  L TWC+ R GPL+ +MFKP+
Sbjct: 225 QCGVFALIAVRDPTEWELKFDRGLSVILYQAIVATMLRYTLTTWCVHRAGPLFCAMFKPV 284

Query: 243 AIVFSIVMDVVIVGDAFCLGSLIGAMIIVAGFYAVMWGKSKEEKTTEDCGLGSVNSSREK 302
            I+F++ M  + +G+ F LGSLIGA+IIV GFYAV+WG S+EE   E+     + SS   
Sbjct: 285 GIIFTVSMSAIFLGENFGLGSLIGAVIIVIGFYAVLWGNSREENKIEN-----LESSSHN 339

Query: 303 VPLLQNR 309
            PLLQ+R
Sbjct: 340 APLLQDR 346

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255581162|ref|XP_002531394.1| Auxin-induced protein 5NG4, putative [Ricinus communis] gi|223528987|gb|EEF30978.1| Auxin-induced protein 5NG4, putative [Ricinus communis]

 Score =  298 bits (763), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 150/297 (50%), Positives = 206/297 (69%), Gaps = 2/297 (0%)

Query: 16  FSVPSYSTERPQLTFSILCSFFLLSVFGCSSQIFSFVGIQYSSPTLSTAMLNLIPAFTFV 75
           FS+    TERP LTFSI+C FFLL +FGC +Q F + GI  SSPTL TAMLNL+P  TF+
Sbjct: 54  FSLLHRRTERPPLTFSIVCGFFLLGLFGCLAQFFGYAGINLSSPTLGTAMLNLVPGLTFI 113

Query: 76  LAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVTFYKGPPLIGELSHSGSPRRLLLSPQ 135
           LA+ FR+EKL+    SS AKS+GT  S+GGAF++T+YKGP ++  L+ S +    LL+  
Sbjct: 114 LAVAFRMEKLDGRTSSSLAKSMGTIISVGGAFILTYYKGPLVL--LTPSLNSSHQLLTQP 171

Query: 136 LSWILGGFFLAAEAFMNSAWFILQALILRKFAAVLIIMFYLFFFNTILSTAFALIVVSEP 195
            +WI+GG  LAA+  M SAW I+QALIL+ + A LII+F+  FF TILS    L+V  +P
Sbjct: 172 SNWIIGGLLLAADCVMTSAWIIIQALILKIYPAELIIVFFYCFFVTILSAIVCLVVERDP 231

Query: 196 SDWKLGLDIGLVAVLYSAVIGTGFRVGLCTWCLSRTGPLYVSMFKPLAIVFSIVMDVVIV 255
           S W L  +I LV+VLYS V G+  +VG+ TWCL +TGP++VSMFKPL I+ +  + V+ +
Sbjct: 232 SAWSLIPNIRLVSVLYSGVFGSALQVGISTWCLRQTGPVFVSMFKPLGIIIAAAVGVICL 291

Query: 256 GDAFCLGSLIGAMIIVAGFYAVMWGKSKEEKTTEDCGLGSVNSSREKVPLLQNRIEE 312
           GD   LGS+IG +I   G+Y VMWG+++E+   +   +   ++S EKVPLLQ++  E
Sbjct: 292 GDTLYLGSIIGTVICGMGYYTVMWGQAREDGKQKPHDVERADTSDEKVPLLQDQDAE 348

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224057230|ref|XP_002299184.1| predicted protein [Populus trichocarpa] gi|222846442|gb|EEE83989.1| predicted protein [Populus trichocarpa]

 Score =  296 bits (759), Expect = 6e-78,   Method: Compositional matrix adjust.
 Identities = 151/311 (48%), Positives = 211/311 (67%), Gaps = 12/311 (3%)

Query: 6   ILMPSPVSFFFSVPSYSTERPQLTFSILCSFFLLSVFGCSSQIFSFVGIQYSSPTLSTAM 65
           IL+PS  SF F     S+ERP LT SI+  FFLL +FGC  Q F + GI  SSPTL TAM
Sbjct: 51  ILLPS--SFLFH---RSSERPPLTLSIVSGFFLLGLFGCLGQSFCYAGINLSSPTLGTAM 105

Query: 66  LNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVTFYKGPPLIGELSHSG 125
           LNL+P  TF+LAIIFR+E ++W++ S+ AKS+GT  SIGGAF+VT YKGP L+  L    
Sbjct: 106 LNLVPGLTFILAIIFRMENVDWKSYSTLAKSMGTIVSIGGAFIVTCYKGPLLLKALPSVT 165

Query: 126 SPRRLLLSPQLSWILGGFFLAAEAFMNSAWFILQALILRKFAAVLIIMFYLFFFNTILST 185
                +L  Q +W+LGG  +A +    S+W I+QALIL+K++A LI++F+ FFF+TILS+
Sbjct: 166 KSSHQVLLQQSNWVLGGLLMAVDCATASSWLIVQALILKKYSAKLIVVFFHFFFSTILSS 225

Query: 186 AFALIVVSEPSDWKLGLDIGLVAVLYSAVIGTGFRVGLCTWCLSRTGPLYVSMFKPLAIV 245
             ++++  +PS W L  +I L+AVL+S ++G  F +G+  WC+ +TGP++V++F PL IV
Sbjct: 226 IVSVVMERDPSAWSLNSNIRLIAVLFSGILGNAFEIGVTAWCVHKTGPVFVAIFAPLGIV 285

Query: 246 FSIVMDVVIVGDAFCLGSLIGAMIIVAGFYAVMWGKSKEE----KTTEDCGLGSVNSSRE 301
            +    V+  GDA  LG +IGA +I  GFYAV+WGK++EE    +  E+CG     SS +
Sbjct: 286 IAAAASVICFGDALDLGIVIGAAVIAIGFYAVIWGKAQEEIKKVEDKENCGSA---SSSQ 342

Query: 302 KVPLLQNRIEE 312
           KVP LQNR  +
Sbjct: 343 KVPFLQNRSND 353

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147778659|emb|CAN71719.1| hypothetical protein VITISV_034106 [Vitis vinifera]

 Score =  295 bits (755), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 149/266 (56%), Positives = 189/266 (71%), Gaps = 1/266 (0%)

Query: 46  SQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGG 105
           +QIF + GIQYSS TL TAMLNL+P FTF+LAIIFR+E+L+W   SS AKS+GT  SI G
Sbjct: 63  AQIFGYAGIQYSSATLGTAMLNLVPGFTFILAIIFRMERLDWRG-SSMAKSMGTVVSIAG 121

Query: 106 AFVVTFYKGPPLIGELSHSGSPRRLLLSPQLSWILGGFFLAAEAFMNSAWFILQALILRK 165
           AF+VTFYKG P++   S S  P +L LS Q +W+ GG  LAA+  M+SAW ILQA IL+K
Sbjct: 122 AFIVTFYKGSPILMTPSPSNFPDQLFLSQQSNWVFGGLLLAADCVMSSAWLILQASILKK 181

Query: 166 FAAVLIIMFYLFFFNTILSTAFALIVVSEPSDWKLGLDIGLVAVLYSAVIGTGFRVGLCT 225
           + A LII FY  FF  I S A +LI+   P  W L      +AV+YS V G  F+VG  T
Sbjct: 182 YPAELIINFYYCFFVAIQSAAASLIMERGPGAWSLKPSTRFIAVMYSGVFGYVFQVGAIT 241

Query: 226 WCLSRTGPLYVSMFKPLAIVFSIVMDVVIVGDAFCLGSLIGAMIIVAGFYAVMWGKSKEE 285
           WC+ + GP++V+MFKP+ IV +I M V+ +GD F +GSLIGA +IV GFY+VMWGK+KEE
Sbjct: 242 WCVHQKGPVFVAMFKPVGIVVAIAMGVIFLGDTFYMGSLIGATVIVIGFYSVMWGKAKEE 301

Query: 286 KTTEDCGLGSVNSSREKVPLLQNRIE 311
           K  ED G+ S+ S+ +K PLLQN IE
Sbjct: 302 KIDEDIGVRSLESTSQKAPLLQNYIE 327

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	313
TAIR|locus:2091363	367	UMAMIT41 "AT3G28050" [Arabidop	0.833	0.711	0.429	1e-52
TAIR|locus:2091368	355	UMAMIT44 "AT3G28130" [Arabidop	0.904	0.797	0.368	5.2e-49
TAIR|locus:2130344	347	UMAMIT38 "AT4G15540" [Arabidop	0.824	0.743	0.375	1.6e-47
TAIR|locus:2091383	360	UMAMIT46 "AT3G28070" [Arabidop	0.897	0.780	0.375	6.9e-47
TAIR|locus:2091338	353	UMAMIT45 "AT3G28100" [Arabidop	0.897	0.796	0.380	1.8e-46
TAIR|locus:2173737	339	UMAMIT42 "Usually multiple aci	0.862	0.796	0.375	3e-46
TAIR|locus:2173752	370	UMAMIT37 "AT5G40230" [Arabidop	0.907	0.767	0.356	4.8e-46
TAIR|locus:2091393	358	UMAMIT47 "AT3G28080" [Arabidop	0.891	0.779	0.362	3.1e-44
TAIR|locus:2092702	383	UMAMIT4 "AT3G18200" [Arabidops	0.840	0.686	0.352	1e-43
TAIR|locus:2102881	364	UMAMIT32 "Usually multiple aci	0.840	0.722	0.356	7.5e-41

TAIR|locus:2091363 UMAMIT41 "AT3G28050" [Arabidopsis thaliana (taxid:3702)]

 Score = 546 (197.3 bits), Expect = 1.0e-52, P = 1.0e-52
 Identities = 115/268 (42%), Positives = 160/268 (59%)

Query:    26 PQLTFSILCSFFLLSVFGCSSQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKL 85
             P + FSIL    LL + GC S I  + GI YSSPTL++A+ NL PAFTF+LA++FR+E +
Sbjct:    69 PPMNFSILYKIVLLGIIGCCSNIMGYTGINYSSPTLASAISNLTPAFTFLLAVVFRMESV 128

Query:    86 NWENKSSQAKSLGTFASIGGAFVVTFYKGPPLIGEXXXXXXXXXXXXXXXXXWILGGFFL 145
             +++  SS AK LGT  SIGGAF+VT Y GP +I +                 WILG  FL
Sbjct:   129 SFKRTSSVAKMLGTVVSIGGAFIVTLYNGPVVIAKSPPSVSLRSQSTNPN--WILGAGFL 186

Query:   146 AAEAFMNSAWFILQALILRKFAAVL-IIMFYLF--FFNTILSTAFALIVVSEPSDWKLGL 202
             A E F    W+I+Q  I+R++ A   ++ FY     F T L T F     ++   WK+  
Sbjct:   187 AVEYFCVPLWYIVQTQIMREYPAEFTVVCFYSIGVSFWTALVTLFT--EGNDLGAWKIKP 244

Query:   203 DIGLVAVLYSAVIGTGFRVGLCTWCLSRTGPLYVSMFKPLAIVFSIVMDVVIVGDAFCLG 262
             +I LV+++ S + G+     + TW L   GPL+V+MFKPL+I  ++ M V+ + D+  +G
Sbjct:   245 NIALVSIVCSGLFGSCINNTIHTWALRIKGPLFVAMFKPLSIAIAVAMGVIFLRDSLYIG 304

Query:   263 SLIGAMIIVAGFYAVMWGKSKEEKTTED 290
             SLIGA +I  GFY VMWGK+KE    ED
Sbjct:   305 SLIGATVITIGFYTVMWGKAKEVALVED 332

GO:0008150 "biological_process" evidence=ND

GO:0016020 "membrane" evidence=IEA;ISS

TAIR|locus:2091368 UMAMIT44 "AT3G28130" [Arabidopsis thaliana (taxid:3702)]

 Score = 511 (184.9 bits), Expect = 5.2e-49, P = 5.2e-49
 Identities = 109/296 (36%), Positives = 168/296 (56%)

Query:    22 STERPQLTFSILCSFFLLSVFGCSSQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFR 81
             S   P L+ SILC   +L + G +  I  F+GI+YS+PTL++A+ N+ PA TF+LAIIFR
Sbjct:    66 SRSLPSLSLSILCKIGVLGLLGSTYLITGFIGIEYSNPTLASAISNINPAITFILAIIFR 125

Query:    82 LEKLNWENKSSQAKSLGTFASIGGAFVVTFYKGP----PLIGEXXXXXXXXXXXXXXXXX 137
             +EK +++ KSS AK +GT  S+ GA VV  Y GP    P                     
Sbjct:   126 MEKASFKEKSSVAKMVGTIVSLVGALVVVLYHGPRVFTPSSPPFPQLRQLLLPLSSSNSD 185

Query:   138 WILGGFFLAAEAFMNSAWFILQALILRKFAAVLIIMFYLFFFNTILSTAFALIVV-SEPS 196
             WI+GG  LA +  +    FILQA I++ + A   + F+ F   +IL++   ++   + PS
Sbjct:   186 WIIGGCLLAIKDTLVPVAFILQAHIMKLYPAPFTVSFFYFLIASILTSLIGIVAEKNNPS 245

Query:   197 DWKLGLDIGLVAVLYSAVIGTGFRVGLCTWCLSRTGPLYVSMFKPLAIVFSIVMDVVIVG 256
              W +  DI LV ++   +   G+   +  W +   GP+Y+++F+PL+I+ +++M  + +G
Sbjct:   246 IWIIHFDITLVCIVVGGIFNPGY-YAIHLWAVRNKGPVYLAIFRPLSILIAVIMGAIFLG 304

Query:   257 DAFCLGSLIGAMIIVAGFYAVMWGKSKEEKTTEDCGLGSVNSSREKVPLLQNRIEE 312
             D+F LGSL+G ++I  GFY VMWGK+KE KT          S  E+ PLL   I++
Sbjct:   305 DSFYLGSLVGGILISLGFYTVMWGKAKEGKT-------QFLSLSEETPLLDENIDD 353

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

GO:0016020 "membrane" evidence=IEA

TAIR|locus:2130344 UMAMIT38 "AT4G15540" [Arabidopsis thaliana (taxid:3702)]

 Score = 497 (180.0 bits), Expect = 1.6e-47, P = 1.6e-47
 Identities = 100/266 (37%), Positives = 153/266 (57%)

Query:    22 STERPQLTFSILCSFFLLSVFGCSSQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFR 81
             S   P    S+    FLL++ G +S++    GI+YSSPTLS+A+ NL PAFTF+LAI FR
Sbjct:    70 SRSLPTAKSSLFFKIFLLALLGLTSRVAGCKGIEYSSPTLSSAISNLTPAFTFILAIFFR 129

Query:    82 LEKLNWENKSSQAKSLGTFASIGGAFVVTFYKGPPLIGEXXXXXXXXXXXXXXXXXWILG 141
             +E++   + ++QAK +GT  SI GA V+  YKGP L+                   WI+G
Sbjct:   130 MEQVMLRSSATQAKIIGTIVSISGALVIVLYKGPKLL--------VAASFTSFESSWIIG 181

Query:   142 GFFLAAEAFMNSAWFILQALILRKFAAVLIIMFYLFFFNTILSTAFALIVVSEPSDWKLG 201
             G  L  +  + S WFILQ  I+  +   + ++F      T++S    L+V  + + W+L 
Sbjct:   182 GLLLGLQFLLLSVWFILQTHIMEIYPEEIAVVFCYNLCATLISGTVCLLVEKDLNSWQLK 241

Query:   202 LDIGLVAVLYSAVIGTGFRVGLCTWCLSRTGPLYVSMFKPLAIVFSIVMDVVIVGDAFCL 261
                 L +V+YS +  T     + TW L   GP+Y+S+FKPL+I  ++ M  + +GD   L
Sbjct:   242 PGFSLASVIYSGLFDTSLGSVIHTWGLHVKGPVYISLFKPLSIAIAVAMAAIFLGDTLHL 301

Query:   262 GSLIGAMIIVAGFYAVMWGKSKEEKT 287
             GS+IG++I+  GFY V+WGK++E+ T
Sbjct:   302 GSVIGSVILSFGFYTVIWGKAREDST 327

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0016020 "membrane" evidence=IEA

TAIR|locus:2091383 UMAMIT46 "AT3G28070" [Arabidopsis thaliana (taxid:3702)]

 Score = 491 (177.9 bits), Expect = 6.9e-47, P = 6.9e-47
 Identities = 110/293 (37%), Positives = 166/293 (56%)

Query:    22 STERPQLTFSILCSFFLLSVFGCSSQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFR 81
             S+  P L+ SIL    LL   G    I  ++GI+YSSPTL++A+ N+ PA TF+LAIIFR
Sbjct:    70 SSSLPPLSVSILSKIGLLGFLGSMYVITGYIGIEYSSPTLASAINNITPALTFILAIIFR 129

Query:    82 LEKLNWENKSSQAKSLGTFASIGGAFVVTFYKGPPLIGEXX----XXXXXXXXXXXXXXX 137
             +EK++++ +SS AK +GT  S+ GA VV FY GP +                        
Sbjct:   130 MEKVSFKERSSLAKLMGTILSLIGALVVIFYHGPRVFLASSPPYVNFRQFSPPLSSSNSD 189

Query:   138 WILGGFFLAAEAFMNSAWFILQALILRKFAAVLIIMF-YLFFFNTILSTAFALIVVSEPS 196
             W++GG  L  +    S  FILQA I+  + A   + F Y    + + ST   ++  + PS
Sbjct:   190 WLIGGALLTMQGIFVSVSFILQAHIMSVYPAAFRVSFLYTVCVSIVTSTIGLVVEKNNPS 249

Query:   197 DWKLGLDIGLVAVLYSAVIGTGFRVGLCTWCLSRTGPLYVSMFKPLAIVFSIVMDVVIVG 256
              W +  DI L+ ++  A++ + + V + +W +   GPLY+++FKPL+I+ ++VM  + + 
Sbjct:   250 VWIIHFDITLITIVTMAIVTSVYYV-IHSWTVRHKGPLYLAIFKPLSILIAVVMGAIFLN 308

Query:   257 DAFCLGSLIGAMIIVAGFYAVMWGKSKEEKTTEDCGLGSVNSSREKVPLLQNR 309
             D+  LG LIG ++I  GFYAVMWGK+ EEK  +        S +EK PLL NR
Sbjct:   309 DSLYLGCLIGGILITLGFYAVMWGKANEEK--DQLSF----SEKEKTPLLLNR 355

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

GO:0016020 "membrane" evidence=IEA;ISS

TAIR|locus:2091338 UMAMIT45 "AT3G28100" [Arabidopsis thaliana (taxid:3702)]

 Score = 487 (176.5 bits), Expect = 1.8e-46, P = 1.8e-46
 Identities = 111/292 (38%), Positives = 166/292 (56%)

Query:    22 STERPQLTFSILCSFFLLSVFGCSSQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFR 81
             S   P L+ SIL    LL + G    I  ++GI+YSSPTL++A+ N+ PA TF+LAIIFR
Sbjct:    67 SRSLPPLSLSILSKIGLLGLLGSMYVITGYIGIEYSSPTLASAISNITPALTFILAIIFR 126

Query:    82 LEKLNWENKSSQAKSLGTFASIGGAFVVTFYKGPPLIGEXX----XXXXXXXXXXXXXXX 137
             +EK++++ +SS AK +GT  S+ GA VV  Y GP +                        
Sbjct:   127 MEKVSFKERSSVAKVMGTILSLIGALVVVLYHGPRVFVASSPPYINFRQLSPPLSSSNSD 186

Query:   138 WILGGFFLAAEAFMNSAWFILQALILRKFAAVLIIMFYLFFFNTILSTAFALIVV-SEPS 196
             W++GG  L       S  FILQA I+  + A   + F      +I+++   L+V  + PS
Sbjct:   187 WLIGGALLTIRDIFVSVSFILQAKIMSTYPAAFTVSFLYIVSVSIVTSMIGLVVEKNNPS 246

Query:   197 DWKLGLDIGLVAVLYSAVIGTGFRVGLCTWCLSRTGPLYVSMFKPLAIVFSIVMDVVIVG 256
              W +  DI L+ ++  A+I + + V + +W +   GPLY+++FKPL+I+ ++VM  V + 
Sbjct:   247 VWIIRFDITLITIVTMAIITSVYYV-IHSWTVRHKGPLYLAIFKPLSILIAVVMSAVFLN 305

Query:   257 DAFCLGSLIGAMIIVAGFYAVMWGKSKEEKTTEDCGLGSVNSSREKVPLLQN 308
             D+  LG LIG ++I  GFYAVMWGK+ EEK   D  L  + S +E+ PLL N
Sbjct:   306 DSLYLGCLIGGLLITLGFYAVMWGKANEEK---DQLL--LVSGKERTPLLLN 352

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0016020 "membrane" evidence=IEA

TAIR|locus:2173737 UMAMIT42 "Usually multiple acids move in and out Transporters 42" [Arabidopsis thaliana (taxid:3702)]

 Score = 485 (175.8 bits), Expect = 3.0e-46, P = 3.0e-46
 Identities = 108/288 (37%), Positives = 166/288 (57%)

Query:    22 STERPQLTFSILCSFFLLSVFGCSSQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFR 81
             S   P LTFSILC+  +L +   + QI  + GI+YSSPTLS+AM N+ PAFTF+LA++FR
Sbjct:    66 SRSLPPLTFSILCNMGILGLIASAFQILGYNGIKYSSPTLSSAMSNVNPAFTFILAVVFR 125

Query:    82 LEKLNWENKSSQAKSLGTFASIGGAFVVTFYKGPPLIGEXXXXXXXXXXXXXXXXXWILG 141
             +E ++   KSS AK LGT  SI GA VVT Y GP L+                   WI+G
Sbjct:   126 MENISLGKKSSVAKVLGTILSIIGALVVTLYHGPMLMSSHSD--------------WIIG 171

Query:   142 GFFLAAEAFMNSAWFILQALILRKF-AAVLIIMFYLFFFNTILSTAFALIVVSEPSDWKL 200
             G  LA +  + S  +++ A  + ++ +AV++ + +      + +    L     P  W +
Sbjct:   172 GGLLALQYILVSVSYLVMAHTMGRYPSAVVVTLVHNVCIAVVCAFVSLLAEKDNPKAWVI 231

Query:   201 GLDIGLVAVLYSAVIGTGFRVGLCTWCLSRTGPLYVSMFKPLAIVFSIVMDVVIVGDAFC 260
               DI L+ V+ + ++ +G+ V + TW +S  GP+Y+SMFKPL+I+ + V   + +G++  
Sbjct:   232 RFDITLITVVATGILNSGYYV-IHTWAVSHKGPVYLSMFKPLSILIAAVSTFIFLGESLY 290

Query:   261 LGSLIGAMIIVAGFYAVMWGKSKEEKTTEDCGLGSVNSSREKVPLLQN 308
             LGS++G ++I  GFY V+WGK+KE+K      + S  S     PLL N
Sbjct:   291 LGSVMGGILISIGFYMVLWGKAKEDKVDIIGAIES--SPSHNAPLLDN 336

GO:0016020 "membrane" evidence=IEA

GO:0006863 "purine nucleobase transport" evidence=RCA

TAIR|locus:2173752 UMAMIT37 "AT5G40230" [Arabidopsis thaliana (taxid:3702)]

 Score = 483 (175.1 bits), Expect = 4.8e-46, P = 4.8e-46
 Identities = 106/297 (35%), Positives = 164/297 (55%)

Query:    22 STERPQLTFSILCSFFLLSVFGCSSQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFR 81
             S   P     +  + FLL++ G  S I    GI+YSSPTL++A+ NL PAFTF LA+IFR
Sbjct:    74 SKRLPSAKTPVFFNIFLLALVGFMSLIVGCKGIEYSSPTLASAISNLTPAFTFTLAVIFR 133

Query:    82 LEKLNWENKSSQAKSLGTFASIGGAFVVTFYKGPPLIGEXXXX-----XXXXXXXXXXXX 136
             +E++   + ++QAK +GT  SI GA VV  YKGP ++ +                     
Sbjct:   134 MEQIVLRSSATQAKIIGTIVSISGALVVILYKGPKVLTDASLTPPSPTISLYQHLTSFDS 193

Query:   137 XWILGGFFLAAEAFMNSAWFILQALILRKFAAVLIIMFYLFFFNTILSTAFALIVVSEPS 196
              WI+GG  LA +  + S W+ILQ  ++  +   + ++F      T++S    L    + +
Sbjct:   194 SWIIGGLLLATQYLLVSVWYILQTRVMELYPEEITVVFLYNLCATLISAPVCLFAEKDLN 253

Query:   197 DWKLGLDIGLVAVLYSAVIGTGFRVGLCTWCLSRTGPLYVSMFKPLAIVFSIVMDVVIVG 256
              + L   + L +V+YS  + + F   + TW L   GP+Y+S+FKPL+IV ++ M V+ +G
Sbjct:   254 SFILKPGVSLASVMYSGGLVSSFGSVIHTWGLHLKGPVYISLFKPLSIVIAVAMGVMFLG 313

Query:   257 DAFCLGSLIGAMIIVAGFYAVMWGKSKEEKTTEDCGLGSVNSSREKVPLLQNR-IEE 312
             DA  LGS+IG++I+  GFY V+WGK++E+      G        E+ PLL +  IEE
Sbjct:   314 DALYLGSVIGSLILSLGFYTVIWGKAREDSIKTVAGT-------EQSPLLPSHTIEE 363

GO:0003674 "molecular_function" evidence=ND

GO:0016020 "membrane" evidence=IEA;ISS

TAIR|locus:2091393 UMAMIT47 "AT3G28080" [Arabidopsis thaliana (taxid:3702)]

 Score = 466 (169.1 bits), Expect = 3.1e-44, P = 3.1e-44
 Identities = 105/290 (36%), Positives = 163/290 (56%)

Query:    22 STERPQLTFSILCSFFLLSVFGCSSQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFR 81
             S   P L+ SIL    LL   G    I   +GI+YS+PTL++A+ N++PA TF+LA+IFR
Sbjct:    67 SRSLPPLSASILSKIGLLGFLGSMYVITGGIGIEYSNPTLASAIGNIVPALTFILAVIFR 126

Query:    82 LEKLNWENKSSQAKSLGTFASIGGAFVVTFYKGPPLIGEXX----XXXXXXXXXXXXXXX 137
             +EK++++ +SS AK +GT  S+ GAFVV FY GP +                        
Sbjct:   127 MEKVSFKERSSVAKVMGTILSLIGAFVVIFYHGPRVFVASSPPYLNFRQLSPPLSSSKSD 186

Query:   138 WILGGFFLAAEAFMNSAWFILQALILRKFA-AVLIIMFYLFFFNTILSTAFALIVVSEPS 196
             W++GG  L  +    S  FILQ  I+R++  A  + + Y+   + + S    ++  + PS
Sbjct:   187 WLIGGAILTIQGIFVSVSFILQTHIMREYPEAFTVSILYILCISIVTSMIGLVVEKNNPS 246

Query:   197 DWKLGLDIGLVAVLYSAVIGTGFRVGLCTWCLSRTGPLYVSMFKPLAIVFSIVMDVVIVG 256
              W +  DI L  ++ + +I + + V + +W +    PLY+++FKPL+I+ ++VM  + + 
Sbjct:   247 IWIIHFDITLFTIVTTGIITSVYYV-IHSWAIRHKRPLYLAIFKPLSILIAVVMGTIFLN 305

Query:   257 DAFCLGSLIGAMIIVAGFYAVMWGKSKEEKTTEDCGLGSVNSSREKVPLL 306
             D+  LG LIG ++I  GFY VMWGK+ EEK      L S  S +EK PLL
Sbjct:   306 DSLYLGCLIGGILITLGFYVVMWGKANEEKNK----LLSF-SGKEKTPLL 350

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

GO:0016020 "membrane" evidence=IEA

GO:0019761 "glucosinolate biosynthetic process" evidence=RCA

TAIR|locus:2092702 UMAMIT4 "AT3G18200" [Arabidopsis thaliana (taxid:3702)]

 Score = 461 (167.3 bits), Expect = 1.0e-43, P = 1.0e-43
 Identities = 93/264 (35%), Positives = 149/264 (56%)

Query:    24 ERPQLTFSILCSFFLLSVFGCSS-QIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRL 82
             ERP LT S+L  FF L++ G ++ Q F  +G+ Y++PT ++AM N +PA TF++A   RL
Sbjct:    89 ERPPLTISLLAQFFFLALIGITANQGFYLLGLYYATPTFASAMQNSVPAITFIMACALRL 148

Query:    83 EKLNWENKSSQAKSLGTFASIGGAFVVTFYKGPPLIGEXXXXXXXXXXXXXXXXXWILGG 142
             E ++   K   AK LGT  SIGGA V+T Y+G P+  +                   LG 
Sbjct:   149 EHIDLVRKHGVAKVLGTLVSIGGATVITLYRGFPIFDQGLNMQKEEVVGSDNSHSLTLGW 208

Query:   143 FFLAAEAFMNSAWFILQALILRKFAAVLIIMFYLFFFNTILSTAFALIVVSEPSDWKLGL 202
              +L       + W +LQA +L+++ A L +  +  FF  I     AL V ++ ++W +  
Sbjct:   209 LYLMGHCLSWAGWMVLQAPVLKQYPAKLTLTSFTCFFGLIQFLVIALFVETDLNNWIIVS 268

Query:   203 DIGLVAVLYSAVIGTGFRVGLCTWCLSRTGPLYVSMFKPLAIVFSIVMDVVIVGDAFCLG 262
                L  +LY+ +I +G  V L TWC+ ++GP++V++F+PL  +    M  +I+GD    G
Sbjct:   269 WEELFTILYAGIIASGLVVYLQTWCIYKSGPVFVAVFQPLQTLLVAAMAFLILGDQLYSG 328

Query:   263 SLIGAMIIVAGFYAVMWGKSKEEK 286
              ++GA+ I+ G Y V+WGK++E K
Sbjct:   329 GIVGAVFIMLGLYLVLWGKNEERK 352

GO:0003674 "molecular_function" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

GO:0016020 "membrane" evidence=IEA

TAIR|locus:2102881 UMAMIT32 "Usually multiple acids move in and out Transporters 32" [Arabidopsis thaliana (taxid:3702)]

 Score = 434 (157.8 bits), Expect = 7.5e-41, P = 7.5e-41
 Identities = 96/269 (35%), Positives = 143/269 (53%)

Query:    25 RPQLTFSILCSFFLLSVFGCSS-QIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLE 83
             RP+LT  ILCS F  ++ G S  Q F  +G++Y+S T S A  N++P+ TF LA++FR E
Sbjct:    66 RPKLTGRILCSLFFSALLGTSLVQYFFLIGLEYTSSTFSLAFSNMVPSVTFALALVFRQE 125

Query:    84 KLNWENKSSQAKSLGTFASIGGAFVVTFYKGPPLIGEXXX---XXXXXXXXXXXXXXWIL 140
              LN ++   +AK LGT   I GA V+T YKG  L  E                    W +
Sbjct:   126 TLNIKSNVGRAKLLGTMICICGALVLTLYKGTALSREHSTHMETHTRTDSTGAMTQKWAM 185

Query:   141 GGFFLAAEAFMNSAWFILQALILRKFAAVLIIMFYLFFFNTILSTAFALIVVSEPSDWKL 200
             G   L     + S+WFI+QA I R +         L FF  I S   +LI     S W +
Sbjct:   186 GSIMLVISIIIWSSWFIVQAKISRVYPCQYTSTTILSFFGVIQSALLSLISERSTSMWVV 245

Query:   201 GLDIGLVAVLYSAVIGTGF-RVGLCTWCLSRTGPLYVSMFKPLAIVFSIVMDVVIVGDAF 259
                  ++A+LYS ++G+G   VG+ +WCL + G ++ S F PL  VF+ +     + +  
Sbjct:   246 KDKFQVLALLYSGIVGSGLCYVGM-SWCLRQRGAVFTSSFIPLIQVFAAIFSFSFLHEQI 304

Query:   260 CLGSLIGAMIIVAGFYAVMWGKSKEEKTT 288
               GS+IG+M+I+ G Y ++WGKSK++  +
Sbjct:   305 YCGSVIGSMVIIVGLYILLWGKSKDKSAS 333

GO:0016020 "membrane" evidence=IEA;ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00028878001 SubName- Full=Chromosome chr1 scaffold_46, whole genome shotgun sequence; (364 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	313
PLN00411	358	PLN00411, PLN00411, nodulin MtN21 family protein;	5e-57

>gnl|CDD|177805 PLN00411, PLN00411, nodulin MtN21 family protein; Provisional

 Score =  187 bits (476), Expect = 5e-57
 Identities = 125/313 (39%), Positives = 185/313 (59%), Gaps = 24/313 (7%)

Query: 6   ILMPSPVSFFFSVPSYSTERPQLTFSILCSFFLLSVFGCSSQIFSFVGIQYSSPTLSTAM 65
           +L+PS    FF+  S S   P L+ SIL    LL   G    I  ++GI+YS+PTL++A+
Sbjct: 56  LLLPS---LFFTNRSRSL--PPLSVSILSKIGLLGFLGSMYVITGYIGIEYSNPTLASAI 110

Query: 66  LNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVTFYKGPPLIGELSHSG 125
            N+ PA TF+LAIIFR+EK++++ +SS AK +GT  S+ GA VV FY GP     +  + 
Sbjct: 111 SNITPALTFILAIIFRMEKVSFKERSSVAKVMGTILSLIGALVVIFYHGP----RVFVAS 166

Query: 126 SPRRL---LLSPQLS-----WILGGFFLAAEAFMNSAWFILQALILRKFAAVLIIMFYLF 177
           SP  L    LSP LS     W++GG  L  +    S  FILQA I+ ++ A   + F   
Sbjct: 167 SPPYLNFRQLSPPLSSSNSDWLIGGALLTIQGIFVSVSFILQAHIMSEYPAAFTVSFLYT 226

Query: 178 FFNTILSTAFALIV-VSEPSDWKLGLDIGLVAVLYSAVIGTGFRVGLCTWCLSRTGPLYV 236
              +I+++   L+V  + PS W +  DI L+ ++  A+I + + V + +W +   GPLY+
Sbjct: 227 VCVSIVTSMIGLVVEKNNPSVWIIHFDITLITIVTMAIITSVYYV-IHSWTVRHKGPLYL 285

Query: 237 SMFKPLAIVFSIVMDVVIVGDAFCLGSLIGAMIIVAGFYAVMWGKSKEEKTTEDCGLGSV 296
           ++FKPL+I+ ++VM  + + D+  LG LIG ++I  GFYAVMWGK+ EEK      L S 
Sbjct: 286 AIFKPLSILIAVVMGAIFLNDSLYLGCLIGGILITLGFYAVMWGKANEEKDQ----LLSF 341

Query: 297 NSSREKVPLLQNR 309
            S +EK PLL N 
Sbjct: 342 -SGKEKTPLLLNG 353

Length = 358

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	313
PLN00411	358	nodulin MtN21 family protein; Provisional	100.0
PRK11272	292	putative DMT superfamily transporter inner membran	99.96
TIGR00817	302	tpt Tpt phosphate/phosphoenolpyruvate translocator	99.96
TIGR00950	260	2A78 Carboxylate/Amino Acid/Amine Transporter.	99.96
PRK11453	299	O-acetylserine/cysteine export protein; Provisiona	99.96
PRK11689	295	aromatic amino acid exporter; Provisional	99.95
PRK10532	293	threonine and homoserine efflux system; Provisiona	99.95
TIGR03340	281	phn_DUF6 phosphonate utilization associated putati	99.95
PRK15430	296	putative chloramphenical resistance permease RarD;	99.94
PF06027	334	DUF914: Eukaryotic protein of unknown function (DU	99.94
PTZ00343	350	triose or hexose phosphate/phosphate translocator;	99.93
COG0697	292	RhaT Permeases of the drug/metabolite transporter	99.89
TIGR00688	256	rarD rarD protein. This uncharacterized protein is	99.86
COG5006	292	rhtA Threonine/homoserine efflux transporter [Amin	99.86
KOG4510	346	consensus Permease of the drug/metabolite transpor	99.84
KOG2765	416	consensus Predicted membrane protein [Function unk	99.81
PF08449	303	UAA: UAA transporter family; InterPro: IPR013657 T	99.8
TIGR00776	290	RhaT RhaT L-rhamnose-proton symporter family prote	99.8
COG2962	293	RarD Predicted permeases [General function predict	99.68
KOG1441	316	consensus Glucose-6-phosphate/phosphate and phosph	99.67
KOG1580	337	consensus UDP-galactose transporter related protei	99.65
COG2510	140	Predicted membrane protein [Function unknown]	99.62
KOG2766	336	consensus Predicted membrane protein [Function unk	99.58
PF00892	126	EamA: EamA-like transporter family; InterPro: IPR0	99.52
KOG1443	349	consensus Predicted integral membrane protein [Fun	99.52
PF04142	244	Nuc_sug_transp: Nucleotide-sugar transporter; Inte	99.48
KOG2234	345	consensus Predicted UDP-galactose transporter [Car	99.36
KOG1581	327	consensus UDP-galactose transporter related protei	99.34
KOG1444	314	consensus Nucleotide-sugar transporter VRG4/SQV-7	99.31
PRK15430	296	putative chloramphenical resistance permease RarD;	99.18
PF06800	269	Sugar_transport: Sugar transport protein; InterPro	99.15
TIGR03340	281	phn_DUF6 phosphonate utilization associated putati	99.14
PF03151	153	TPT: Triose-phosphate Transporter family; InterPro	99.12
PRK02971	129	4-amino-4-deoxy-L-arabinose-phosphoundecaprenol fl	99.1
TIGR00688	256	rarD rarD protein. This uncharacterized protein is	99.09
KOG1583	330	consensus UDP-N-acetylglucosamine transporter [Car	99.02
PF13536	113	EmrE: Multidrug resistance efflux transporter	98.96
PF00892	126	EamA: EamA-like transporter family; InterPro: IPR0	98.95
KOG1442	347	consensus GDP-fucose transporter [Carbohydrate tra	98.94
KOG4314	290	consensus Predicted carbohydrate/phosphate translo	98.9
PLN00411	358	nodulin MtN21 family protein; Provisional	98.9
KOG3912	372	consensus Predicted integral membrane protein [Gen	98.89
COG2510	140	Predicted membrane protein [Function unknown]	98.88
KOG1582	367	consensus UDP-galactose transporter related protei	98.83
PRK11272	292	putative DMT superfamily transporter inner membran	98.81
TIGR00950	260	2A78 Carboxylate/Amino Acid/Amine Transporter.	98.8
PF13536	113	EmrE: Multidrug resistance efflux transporter	98.78
PF05653	300	Mg_trans_NIPA: Magnesium transporter NIPA; InterPr	98.71
COG5070	309	VRG4 Nucleotide-sugar transporter [Carbohydrate tr	98.71
PRK11453	299	O-acetylserine/cysteine export protein; Provisiona	98.7
PRK11689	295	aromatic amino acid exporter; Provisional	98.66
PTZ00343	350	triose or hexose phosphate/phosphate translocator;	98.65
TIGR00817	302	tpt Tpt phosphate/phosphoenolpyruvate translocator	98.65
PRK15051	111	4-amino-4-deoxy-L-arabinose-phosphoundecaprenol fl	98.63
TIGR00803	222	nst UDP-galactose transporter. NSTs generally appe	98.62
PRK13499	345	rhamnose-proton symporter; Provisional	98.54
PRK15051	111	4-amino-4-deoxy-L-arabinose-phosphoundecaprenol fl	98.44
COG2962	293	RarD Predicted permeases [General function predict	98.33
COG0697	292	RhaT Permeases of the drug/metabolite transporter	98.31
PRK10452	120	multidrug efflux system protein MdtJ; Provisional	98.26
PRK10532	293	threonine and homoserine efflux system; Provisiona	98.25
TIGR00776	290	RhaT RhaT L-rhamnose-proton symporter family prote	98.24
KOG2922	335	consensus Uncharacterized conserved protein [Funct	98.24
COG4975	288	GlcU Putative glucose uptake permease [Carbohydrat	98.08
PF06027	334	DUF914: Eukaryotic protein of unknown function (DU	97.96
PRK09541	110	emrE multidrug efflux protein; Reviewed	97.95
PF08449	303	UAA: UAA transporter family; InterPro: IPR013657 T	97.84
PF05653	300	Mg_trans_NIPA: Magnesium transporter NIPA; InterPr	97.84
KOG4510	346	consensus Permease of the drug/metabolite transpor	97.83
PRK02971	129	4-amino-4-deoxy-L-arabinose-phosphoundecaprenol fl	97.81
PRK10650	109	multidrug efflux system protein MdtI; Provisional	97.79
COG2076	106	EmrE Membrane transporters of cations and cationic	97.75
PRK11431	105	multidrug efflux system protein; Provisional	97.65
PF03151	153	TPT: Triose-phosphate Transporter family; InterPro	97.63
PF04657	138	DUF606: Protein of unknown function, DUF606; Inter	97.62
PF06800	269	Sugar_transport: Sugar transport protein; InterPro	97.5
PF00893	93	Multi_Drug_Res: Small Multidrug Resistance protein	97.41
PRK10650	109	multidrug efflux system protein MdtI; Provisional	97.36
PRK10452	120	multidrug efflux system protein MdtJ; Provisional	97.28
PRK11431	105	multidrug efflux system protein; Provisional	97.26
COG2076	106	EmrE Membrane transporters of cations and cationic	97.26
PRK09541	110	emrE multidrug efflux protein; Reviewed	97.23
COG3238	150	Uncharacterized protein conserved in bacteria [Fun	97.1
PRK13499	345	rhamnose-proton symporter; Provisional	97.06
PF04142	244	Nuc_sug_transp: Nucleotide-sugar transporter; Inte	96.83
COG5006	292	rhtA Threonine/homoserine efflux transporter [Amin	96.68
PF00893	93	Multi_Drug_Res: Small Multidrug Resistance protein	96.46
COG4975	288	GlcU Putative glucose uptake permease [Carbohydrat	96.45
PF10639	113	UPF0546: Uncharacterised protein family UPF0546; I	96.25
PF07857	254	DUF1632: CEO family (DUF1632); InterPro: IPR012435	95.68
KOG1441	316	consensus Glucose-6-phosphate/phosphate and phosph	95.67
PF06379	344	RhaT: L-rhamnose-proton symport protein (RhaT); In	95.62
PF10639	113	UPF0546: Uncharacterised protein family UPF0546; I	94.98
KOG2234	345	consensus Predicted UDP-galactose transporter [Car	94.74
PF04657	138	DUF606: Protein of unknown function, DUF606; Inter	94.71
KOG2922	335	consensus Uncharacterized conserved protein [Funct	94.32
KOG1444	314	consensus Nucleotide-sugar transporter VRG4/SQV-7	94.31
TIGR00803	222	nst UDP-galactose transporter. NSTs generally appe	91.94
KOG2765	416	consensus Predicted membrane protein [Function unk	91.88
PF02694	107	UPF0060: Uncharacterised BCR, YnfA/UPF0060 family;	91.84
KOG1580	337	consensus UDP-galactose transporter related protei	91.5
KOG4314	290	consensus Predicted carbohydrate/phosphate translo	90.27
PRK02237	109	hypothetical protein; Provisional	89.87
PF06379	344	RhaT: L-rhamnose-proton symport protein (RhaT); In	88.44
KOG1581	327	consensus UDP-galactose transporter related protei	85.7
KOG4831	125	consensus Unnamed protein [Function unknown]	85.43
PF03547	385	Mem_trans: Membrane transport protein; InterPro: I	84.74
PF07168	336	Ureide_permease: Ureide permease; InterPro: IPR009	83.68
COG3238	150	Uncharacterized protein conserved in bacteria [Fun	83.46
COG5070	309	VRG4 Nucleotide-sugar transporter [Carbohydrate tr	82.54
KOG3912	372	consensus Predicted integral membrane protein [Gen	82.28
PF04342	108	DUF486: Protein of unknown function, DUF486; Inter	80.1

>PLN00411 nodulin MtN21 family protein; Provisional

Probab=100.00  E-value=3.4e-35  Score=270.82  Aligned_cols=271  Identities=38%  Similarity=0.675  Sum_probs=210.3

Q ss_pred             cchhhhcchhhhhhcCCCCCC-CCCCCCHHHHHHHHHHHHHHHHHHHHHHHhccccChhhHhHhhhhhHHHHHHHHHHH-
Q 021377            3 SLSILMPSPVSFFFSVPSYST-ERPQLTFSILCSFFLLSVFGCSSQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIF-   80 (313)
Q Consensus         3 ~~~~l~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~al~~~~~~~a~ii~~~~P~~~~l~a~~~-   80 (313)
                      .+++++++|+.+++    +|+ +.++.+++++..+.+.|+++.+++.+++.|++|+++++++++.++.|+++.++++++ 
T Consensus        51 ~iA~l~Ll~~~~~~----~~~~~~~~~~~~~~~~l~l~g~~g~~~~~~~~~gl~~tsa~~asll~~~~P~~~~lla~~~~  126 (358)
T PLN00411         51 LLASLLLLPSLFFT----NRSRSLPPLSVSILSKIGLLGFLGSMYVITGYIGIEYSNPTLASAISNITPALTFILAIIFR  126 (358)
T ss_pred             HHHHHHHHHHHHHH----HHhcccCcchHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHhhHHHHHHHHHHHH
Confidence            35677788887665    442 234446788889999999987788899999999999999999999999999999999 


Q ss_pred             -----hhhcccccccccCcchhhHHhhhhhhhhheeecCCCCcCCCCC--CCC-CCcc-CCCCCccchhHHHHHHHHHHH
Q 021377           81 -----RLEKLNWENKSSQAKSLGTFASIGGAFVVTFYKGPPLIGELSH--SGS-PRRL-LLSPQLSWILGGFFLAAEAFM  151 (313)
Q Consensus        81 -----~~E~~~~~~~~~~~~~~g~~l~~~Gv~ll~~~~~~~~~~~~~~--~~~-~~~~-~~~~~~~~~~G~~~~l~s~~~  151 (313)
                           ++||++++      +++|++++++|+.++...+++.....+++  -+. .... ......++..|++++++++++
T Consensus       127 ~e~~~~~er~~~~------~~~G~~l~~~Gv~ll~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~l~l~aa~~  200 (358)
T PLN00411        127 MEKVSFKERSSVA------KVMGTILSLIGALVVIFYHGPRVFVASSPPYLNFRQLSPPLSSSNSDWLIGGALLTIQGIF  200 (358)
T ss_pred             hchhhhcccccHH------HHHHHHHHHHHHHHHHHccCcccccccccccccccccccccCCCcccHHHHHHHHHHHHHH
Confidence                 59999999      99999999999998864334321110000  000 0000 011123446799999999999


Q ss_pred             HHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHhcc-CCCcccccchhHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 021377          152 NSAWFILQALILRKFAAVLIIMFYLFFFNTILSTAFALIVVS-EPSDWKLGLDIGLVAVLYSAVIGTGFRVGLCTWCLSR  230 (313)
Q Consensus       152 ~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ll~~g~~~s~~~~~l~~~a~~~  230 (313)
                      |+.|++++|+..+++|+....++|++.++++...+.++..++ +...|....+.....++|.+++ +.++|.+|++++++
T Consensus       201 wa~~~il~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~y~~i~-t~lay~lw~~~v~~  279 (358)
T PLN00411        201 VSVSFILQAHIMSEYPAAFTVSFLYTVCVSIVTSMIGLVVEKNNPSVWIIHFDITLITIVTMAII-TSVYYVIHSWTVRH  279 (358)
T ss_pred             HHHHHHHHHHHHHHcCcHhHHHHHHHHHHHHHHHHHHHHHccCCcccceeccchHHHHHHHHHHH-HHHHHHHHHHHHhc
Confidence            999999999998888655677888888888877777665543 2233322222244567888875 67899999999999


Q ss_pred             CCceeeeechhhHHHHHHHHHHHHhcCccchhhHHHHHHHHHHHHHHhcccccc
Q 021377          231 TGPLYVSMFKPLAIVFSIVMDVVIVGDAFCLGSLIGAMIIVAGFYAVMWGKSKE  284 (313)
Q Consensus       231 ~~a~~~s~~~~~~pv~a~i~~~l~~ge~~~~~~~~G~~lii~g~~l~~~~~~~~  284 (313)
                      .||++++.+.+++|+++++++++++||++++.+++|+++|+.|+++..+.+++|
T Consensus       280 ~ga~~as~~~~L~PV~a~llg~l~LgE~lt~~~~iG~~LIl~Gv~l~~~~~~~~  333 (358)
T PLN00411        280 KGPLYLAIFKPLSILIAVVMGAIFLNDSLYLGCLIGGILITLGFYAVMWGKANE  333 (358)
T ss_pred             cCchHHHHHHhHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHhhhhhh
Confidence            999999999999999999999999999999999999999999999998766555

>PRK11272 putative DMT superfamily transporter inner membrane protein; Provisional

Probab=99.96  E-value=4.2e-28  Score=219.37  Aligned_cols=241  Identities=12%  Similarity=0.097  Sum_probs=196.7

Q ss_pred             chhhhcchhhhhhcCCCCCCCCCCCCHHHHHHHHHHHHHH-HHHHHHHHHhc-cccChhhHhHhhhhhHHHHHHHHHHHh
Q 021377            4 LSILMPSPVSFFFSVPSYSTERPQLTFSILCSFFLLSVFG-CSSQIFSFVGI-QYSSPTLSTAMLNLIPAFTFVLAIIFR   81 (313)
Q Consensus         4 ~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~al-~~~~~~~a~ii~~~~P~~~~l~a~~~~   81 (313)
                      +++++++++....    ++  + ..+++++......|.++ ..++.+++.+. ++++++.++++.++.|+++.+++++ +
T Consensus        46 ~a~l~ll~~~~~~----~~--~-~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~a~~a~~l~~~~Pl~~~lla~~-~  117 (292)
T PRK11272         46 IAGILLLAFLLLR----GH--P-LPTLRQWLNAALIGLLLLAVGNGMVTVAEHQNVPSGIAAVVVATVPLFTLCFSRL-F  117 (292)
T ss_pred             HHHHHHHHHHHHh----CC--C-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHHHHHHHH-h
Confidence            4566666665433    22  1 12567788888899988 78899999999 9999999999999999999999985 6


Q ss_pred             hhcccccccccCcchhhHHhhhhhhhhheeecCCCCcCCCCCCCCCCccCCCCCccchhHHHHHHHHHHHHHHHHHHHHH
Q 021377           82 LEKLNWENKSSQAKSLGTFASIGGAFVVTFYKGPPLIGELSHSGSPRRLLLSPQLSWILGGFFLAAEAFMNSAWFILQAL  161 (313)
Q Consensus        82 ~E~~~~~~~~~~~~~~g~~l~~~Gv~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~s~~~~a~~~v~~k~  161 (313)
                      |||++++      +++|++++++|+.++..  +.                 .. +....|++++++++++||.|.+..||
T Consensus       118 ~e~~~~~------~~~~~~la~~Gv~ll~~--~~-----------------~~-~~~~~G~l~~l~a~~~~a~~~~~~~~  171 (292)
T PRK11272        118 GIRTRKL------EWLGIAIGLAGIVLLNS--GG-----------------NL-SGNPWGAILILIASASWAFGSVWSSR  171 (292)
T ss_pred             cccCchh------HHHHHHHHHHhHHHHhc--Cc-----------------cc-ccchHHHHHHHHHHHHHHHHHHHHHh
Confidence            9999999      99999999999998742  11                 00 12246999999999999999999999


Q ss_pred             HhhhchhHHHHHHHHHHHHHHHHHHHHHHhccCCCcccccchhHHHHHHHHHHHHHHHHHHHHHHHhccCCceeeeechh
Q 021377          162 ILRKFAAVLIIMFYLFFFNTILSTAFALIVVSEPSDWKLGLDIGLVAVLYSAVIGTGFRVGLCTWCLSRTGPLYVSMFKP  241 (313)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~g~~~s~~~~~l~~~a~~~~~a~~~s~~~~  241 (313)
                      ..++.  +...+.+++.++++...++....+.+..  ...+...|..+++++++++.++|.+|++++++.++++++.+.+
T Consensus       172 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~i~~l~i~~s~~~~~l~~~~~~~~~~~~~s~~~~  247 (292)
T PRK11272        172 LPLPV--GMMAGAAEMLAAGVVLLIASLLSGERLT--ALPTLSGFLALGYLAVFGSIIAISAYMYLLRNVRPALATSYAY  247 (292)
T ss_pred             cCCCc--chHHHHHHHHHHHHHHHHHHHHcCCccc--ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHH
Confidence            76543  4556778888888888777654432211  1123357889999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHHhcCccchhhHHHHHHHHHHHHHHhcccc
Q 021377          242 LAIVFSIVMDVVIVGDAFCLGSLIGAMIIVAGFYAVMWGKS  282 (313)
Q Consensus       242 ~~pv~a~i~~~l~~ge~~~~~~~~G~~lii~g~~l~~~~~~  282 (313)
                      ++|+++++++++++||++++.+++|+++++.|+++..+.++
T Consensus       248 l~Pi~a~i~~~~~l~E~~t~~~iiG~~lIi~gv~~~~~~~~  288 (292)
T PRK11272        248 VNPVVAVLLGTGLGGETLSPIEWLALGVIVFAVVLVTLGKY  288 (292)
T ss_pred             HHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHHHh
Confidence            99999999999999999999999999999999999876544

>TIGR00817 tpt Tpt phosphate/phosphoenolpyruvate translocator

Probab=99.96  E-value=3.1e-28  Score=221.25  Aligned_cols=231  Identities=16%  Similarity=0.158  Sum_probs=186.3

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHHHHhccccChhhHhHhhhhhHHHHHHHHHHHhhhcccccccccCcchhhHHhhhh
Q 021377           25 RPQLTFSILCSFFLLSVFGCSSQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIG  104 (313)
Q Consensus        25 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~al~~~~~~~a~ii~~~~P~~~~l~a~~~~~E~~~~~~~~~~~~~~g~~l~~~  104 (313)
                      +++.+++++...+..|++++.++.+.+.|++|++++.++++.++.|+++++++++++|||++++      ++.|++++++
T Consensus        57 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~~s~s~~~li~~~~Pv~~~ll~~~~~~e~~~~~------~~~~l~l~~~  130 (302)
T TIGR00817        57 RLKISSALLKLLLPVAIVHTIGHVTSNVSLSKVAVSFTHTIKAMEPFFSVVLSAFFLGQEFPST------LWLSLLPIVG  130 (302)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHhcchHHHHHHHHHHhCCCCcHH------HHHHHHHHHH
Confidence            4457788999999999999888999999999999999999999999999999999999999999      9999999999


Q ss_pred             hhhhheeecCCCCcCCCCCCCCCCccCCCCCccchhHHHHHHHHHHHHHHHHHHHHHHhh--hchhHHHHHHHHHHHHHH
Q 021377          105 GAFVVTFYKGPPLIGELSHSGSPRRLLLSPQLSWILGGFFLAAEAFMNSAWFILQALILR--KFAAVLIIMFYLFFFNTI  182 (313)
Q Consensus       105 Gv~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~s~~~~a~~~v~~k~~~~--~~~~~~~~~~~~~~~~~~  182 (313)
                      |+.+...  +                   +......|++++++++++|+.|.++.||..+  +. |+...+.|++..+++
T Consensus       131 Gv~l~~~--~-------------------~~~~~~~G~~~~l~a~~~~a~~~v~~k~~~~~~~~-~~~~~~~~~~~~~~~  188 (302)
T TIGR00817       131 GVALASD--T-------------------ELSFNWAGFLSAMISNITFVSRNIFSKKAMTIKSL-DKTNLYAYISIMSLF  188 (302)
T ss_pred             HHhhhcC--C-------------------cccccHHHHHHHHHHHHHHHHHHHHHHHhhccCCC-CcccHHHHHHHHHHH
Confidence            9987531  1                   1122346999999999999999999999887  66 689999999999999


Q ss_pred             HHHHHHHHhccCC-C--cccc-----cchhHHHHHHHHHHHHHHHHHHHHHHHhccCCceeeeechhhHHHHHHHHHHHH
Q 021377          183 LSTAFALIVVSEP-S--DWKL-----GLDIGLVAVLYSAVIGTGFRVGLCTWCLSRTGPLYVSMFKPLAIVFSIVMDVVI  254 (313)
Q Consensus       183 ~~~~~~~~~~~~~-~--~~~~-----~~~~~~~~ll~~g~~~s~~~~~l~~~a~~~~~a~~~s~~~~~~pv~a~i~~~l~  254 (313)
                      .++|+....+... .  ++..     .....+...+..+..+....+.++++++++.++++.+.+.+++|++++++++++
T Consensus       189 ~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~sa~t~sv~~~l~pv~~~~~~~~~  268 (302)
T TIGR00817       189 LLSPPAFITEGPPFLPHGFMQAISGVNVTKIYTVSLVAAMGFFHFYQQVAFMLLGRVSPLTHSVGNCMKRVVVIVVSILF  268 (302)
T ss_pred             HHHHHHHHHcchHHHHHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHHHHHHHccCCchHHHHHhhhhhhheeeeehhh
Confidence            9999887554211 0  0000     000011112233322222333456689999999999999999999999999999


Q ss_pred             hcCccchhhHHHHHHHHHHHHHHhccccc
Q 021377          255 VGDAFCLGSLIGAMIIVAGFYAVMWGKSK  283 (313)
Q Consensus       255 ~ge~~~~~~~~G~~lii~g~~l~~~~~~~  283 (313)
                      +||++++.+++|+++++.|++++.+.|++
T Consensus       269 lge~lt~~~~~G~~lil~Gv~l~~~~k~~  297 (302)
T TIGR00817       269 FGTKISPQQVFGTGIAIAGVFLYSRVKAQ  297 (302)
T ss_pred             cCCCCchhHHHHHHHHHHHHHHHHHHhcc
Confidence            99999999999999999999999876544

specificities overlap.

>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter

Probab=99.96  E-value=1.5e-27  Score=212.00  Aligned_cols=216  Identities=19%  Similarity=0.264  Sum_probs=185.7

Q ss_pred             CHHHHHHHHHHHHHH-HHHHHHHHHhccccChhhHhHhhhhhHHHHHHHHHHHhhhcccccccccCcchhhHHhhhhhhh
Q 021377           29 TFSILCSFFLLSVFG-CSSQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAF  107 (313)
Q Consensus        29 ~~~~~~~~~~~g~~~-~~~~~~~~~al~~~~~~~a~ii~~~~P~~~~l~a~~~~~E~~~~~~~~~~~~~~g~~l~~~Gv~  107 (313)
                      +++++.+....|.++ .+++.+++.|++++++++++++.++.|+++.+++++++|||++++      +++|+.++++|+.
T Consensus        42 ~~~~~~~~~~~~~~~~~l~~~~~~~a~~~~~~~~~~ii~~~~P~~~~~~~~l~~~e~~~~~------~~~gi~i~~~Gv~  115 (260)
T TIGR00950        42 PLKRLLRLLLLGALQIGVFYVLYFVAVKRLPVGEAALLLYLAPLYVTLLSDLMGKERPRKL------VLLAAVLGLAGAV  115 (260)
T ss_pred             CHhHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhHHHHhhhHHHHHHHHHHHccCCCcHH------HHHHHHHHHHhHH
Confidence            456777888888888 999999999999999999999999999999999999999999999      9999999999999


Q ss_pred             hheeecCCCCcCCCCCCCCCCccCCCCCccchhHHHHHHHHHHHHHHHHHHHHHHhhhch-hHHHHHHHHHHHHHHHHHH
Q 021377          108 VVTFYKGPPLIGELSHSGSPRRLLLSPQLSWILGGFFLAAEAFMNSAWFILQALILRKFA-AVLIIMFYLFFFNTILSTA  186 (313)
Q Consensus       108 ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~s~~~~a~~~v~~k~~~~~~~-~~~~~~~~~~~~~~~~~~~  186 (313)
                      ++.. .+                   +......|+.++++++++|+.+.+..|+..++.+ ++.....+++.++.+.+.+
T Consensus       116 li~~-~~-------------------~~~~~~~G~~~~l~a~~~~a~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~l~~  175 (260)
T TIGR00950       116 LLLS-DG-------------------NLSINPAGLLLGLGSGISFALGTVLYKRLVKKEGPELLQFTGWVLLLGALLLLP  175 (260)
T ss_pred             hhcc-CC-------------------cccccHHHHHHHHHHHHHHHHHHHHHhHHhhcCCchHHHHHHHHHHHHHHHHHH
Confidence            9842 11                   1123357999999999999999999999887662 2345555778888888888


Q ss_pred             HHHHhccCCCcccccchhHHHHHHHHHHHHHHHHHHHHHHHhccCCceeeeechhhHHHHHHHHHHHHhcCccchhhHHH
Q 021377          187 FALIVVSEPSDWKLGLDIGLVAVLYSAVIGTGFRVGLCTWCLSRTGPLYVSMFKPLAIVFSIVMDVVIVGDAFCLGSLIG  266 (313)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~~~~~ll~~g~~~s~~~~~l~~~a~~~~~a~~~s~~~~~~pv~a~i~~~l~~ge~~~~~~~~G  266 (313)
                      ..+..+++. ..   +...+..+++.+++++.++|.+|++++++.++.+++.+.+++|+++++++++++||++++.+++|
T Consensus       176 ~~~~~~~~~-~~---~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~s~~~~~~pv~~~ll~~~~~~E~~~~~~~~G  251 (260)
T TIGR00950       176 FAWFLGPNP-QA---LSLQWGALLYLGLIGTALAYFLWNKGLTLVDPSAASILALAEPLVALLLGLLILGETLSLPQLIG  251 (260)
T ss_pred             HHHhcCCCC-Cc---chHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHH
Confidence            776543221 11   33477789999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHH
Q 021377          267 AMIIVAGF  274 (313)
Q Consensus       267 ~~lii~g~  274 (313)
                      .++++.|+
T Consensus       252 ~~li~~g~  259 (260)
T TIGR00950       252 GALIIAAV  259 (260)
T ss_pred             HHHHHHhc
Confidence            99999886

>PRK11453 O-acetylserine/cysteine export protein; Provisional

Probab=99.96  E-value=2.4e-27  Score=215.06  Aligned_cols=223  Identities=19%  Similarity=0.210  Sum_probs=177.7

Q ss_pred             HHHHHHHH-HHHHHHHHHhccc-cChhhHhHhhhhhHHHHHHHHHHHhhhcccccccccCcchhhHHhhhhhhhhheeec
Q 021377           36 FFLLSVFG-CSSQIFSFVGIQY-SSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVTFYK  113 (313)
Q Consensus        36 ~~~~g~~~-~~~~~~~~~al~~-~~~~~a~ii~~~~P~~~~l~a~~~~~E~~~~~~~~~~~~~~g~~l~~~Gv~ll~~~~  113 (313)
                      ....|++. ..++.+++.++++ .+++.++++.++.|+++.+++++++|||++++      +++|++++++|+.++.. .
T Consensus        61 ~~~~g~~~~~~~~~~~~~~~~~~~~a~~a~~l~~~~pi~~~ll~~~~l~e~~~~~------~~~~~~l~~~Gv~ll~~-~  133 (299)
T PRK11453         61 LLGYGLTISFGQFAFLFCAINFGMPAGLASLVLQAQAFFTIVLGAFTFGERLQGK------QLAGIALAIFGVLVLIE-D  133 (299)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhHHHHHHHHHHHHhcCcCcHH------HHHHHHHHHHhHHHhcc-c
Confidence            34456655 6666788889988 58899999999999999999999999999999      99999999999998852 1


Q ss_pred             CCCCcCCCCCCCCCCccCCCCCccchhHHHHHHHHHHHHHHHHHHHHHHhhhchh--HHHHHHHHHHHHHHHHHHHHHHh
Q 021377          114 GPPLIGELSHSGSPRRLLLSPQLSWILGGFFLAAEAFMNSAWFILQALILRKFAA--VLIIMFYLFFFNTILSTAFALIV  191 (313)
Q Consensus       114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~s~~~~a~~~v~~k~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~  191 (313)
                      +.                 .+......|++++++++++|+.|.+++|+..++.++  ......+.+..+.+.....+...
T Consensus       134 ~~-----------------~~~~~~~~G~~l~l~aal~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  196 (299)
T PRK11453        134 SL-----------------NGQHVAMLGFMLTLAAAFSWACGNIFNKKIMSHSTRPAVMSLVVWSALIPIIPFFVASLIL  196 (299)
T ss_pred             cC-----------------CCcchhHHHHHHHHHHHHHHHHHHHHHHHHhcccCccchhHHHHHHHHHHHHHHHHHHHHh
Confidence            10                 011122469999999999999999999997665421  23445566666655444444433


Q ss_pred             ccCC---CcccccchhHHHHHHHHHHHHHHHHHHHHHHHhccCCceeeeechhhHHHHHHHHHHHHhcCccchhhHHHHH
Q 021377          192 VSEP---SDWKLGLDIGLVAVLYSAVIGTGFRVGLCTWCLSRTGPLYVSMFKPLAIVFSIVMDVVIVGDAFCLGSLIGAM  268 (313)
Q Consensus       192 ~~~~---~~~~~~~~~~~~~ll~~g~~~s~~~~~l~~~a~~~~~a~~~s~~~~~~pv~a~i~~~l~~ge~~~~~~~~G~~  268 (313)
                      +++.   .++...+...|..++|++++++.++|.+|++++++.++.+++.+.+++|+++++++++++||++++.+++|++
T Consensus       197 ~~~~~~~~~~~~~~~~~~~~l~~l~i~~t~~~~~l~~~~l~~~~a~~~s~~~~l~Pv~a~~~~~l~lgE~~~~~~~iG~~  276 (299)
T PRK11453        197 DGSATMIHSLVTIDMTTILSLMYLAFVATIVGYGIWGTLLGRYETWRVAPLSLLVPVVGLASAALLLDERLTGLQFLGAV  276 (299)
T ss_pred             cCchhhhhhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHhCCCccHHHHHHHH
Confidence            3221   1112223357999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhcccc
Q 021377          269 IIVAGFYAVMWGKS  282 (313)
Q Consensus       269 lii~g~~l~~~~~~  282 (313)
                      ++++|+++..+.++
T Consensus       277 lI~~gv~l~~~~~~  290 (299)
T PRK11453        277 LIMAGLYINVFGLR  290 (299)
T ss_pred             HHHHHHHHHhcchh
Confidence            99999999887665

>PRK11689 aromatic amino acid exporter; Provisional

Probab=99.95  E-value=1e-26  Score=210.61  Aligned_cols=223  Identities=15%  Similarity=0.143  Sum_probs=168.5

Q ss_pred             HHHHHHHH-HHHHHHHHHhccc----cChhhHhHhhhhhHHHHHHHHHHHhhhcccccccccCcchhhHHhhhhhhhhhe
Q 021377           36 FFLLSVFG-CSSQIFSFVGIQY----SSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVT  110 (313)
Q Consensus        36 ~~~~g~~~-~~~~~~~~~al~~----~~~~~a~ii~~~~P~~~~l~a~~~~~E~~~~~~~~~~~~~~g~~l~~~Gv~ll~  110 (313)
                      ..+.+.++ ..++.+++.++++    +++++++++.++.|+++.+++++++|||++++      ++.|++++++|+.++.
T Consensus        63 ~~~~~~l~~~~~~~~~~~a~~~~~~~~~a~~a~~l~~~~Pi~~~ll~~~~~~e~~~~~------~~~g~~l~~~Gv~li~  136 (295)
T PRK11689         63 YLLAGGLLFVSYEICLALSLGYANTRRQAIEVGMVNYLWPSLTILFAVLFNGQKANWL------LIPGLLLALAGVAWVL  136 (295)
T ss_pred             HHHHHhHHHHHHHHHHHHHHHHhhccccchHHHHHHHHhHHHHHHHHHHHhcCCccHH------HHHHHHHHHHhHhhee
Confidence            33445555 7888888887754    57788899999999999999999999999999      9999999999999985


Q ss_pred             eecCCCCcCCCCCCCCCCccCCCCCccchhHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHHHHH
Q 021377          111 FYKGPPLIGELSHSGSPRRLLLSPQLSWILGGFFLAAEAFMNSAWFILQALILRKFAAVLIIMFYLFFFNTILSTAFALI  190 (313)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~s~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  190 (313)
                      . .+......         +..........|++++++++++||.|.++.||..++. ++....  . ..+.+.+.+....
T Consensus       137 ~-~~~~~~~~---------~~~~~~~~~~~G~~~~l~aa~~~A~~~v~~k~~~~~~-~~~~~~--~-~~~~~~l~~~~~~  202 (295)
T PRK11689        137 G-GDNGLSLA---------ELINNIASNPLSYGLAFIGAFIWAAYCNVTRKYARGK-NGITLF--F-ILTALALWIKYFL  202 (295)
T ss_pred             c-CCccchhh---------hhhhccccChHHHHHHHHHHHHHHHHHHHHhhccCCC-CchhHH--H-HHHHHHHHHHHHH
Confidence            2 11100000         0000111234699999999999999999999987776 465432  2 2333333333332


Q ss_pred             hccCCCcccccchhHHHHHHHHHHHHHHHHHHHHHHHhccCCceeeeechhhHHHHHHHHHHHHhcCccchhhHHHHHHH
Q 021377          191 VVSEPSDWKLGLDIGLVAVLYSAVIGTGFRVGLCTWCLSRTGPLYVSMFKPLAIVFSIVMDVVIVGDAFCLGSLIGAMII  270 (313)
Q Consensus       191 ~~~~~~~~~~~~~~~~~~ll~~g~~~s~~~~~l~~~a~~~~~a~~~s~~~~~~pv~a~i~~~l~~ge~~~~~~~~G~~li  270 (313)
                      .+ +. ... .+...|..+++.++ +++++|.+|++++++.++++++.+.+++|+++++++++++||++++.+++|+++|
T Consensus       203 ~~-~~-~~~-~~~~~~~~l~~~~~-~t~~~~~l~~~al~~~~a~~~s~~~~l~Pv~a~i~~~~~lgE~~~~~~~iG~~lI  278 (295)
T PRK11689        203 SP-QP-AMV-FSLPAIIKLLLAAA-AMGFGYAAWNVGILHGNMTLLATASYFTPVLSAALAALLLSTPLSFSFWQGVAMV  278 (295)
T ss_pred             hc-Cc-ccc-CCHHHHHHHHHHHH-HHHHHHHHHHHHHHccCHHHHHHHHHhHHHHHHHHHHHHhCCCCcHHHHHHHHHH
Confidence            22 11 111 22346778888885 8999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhcccc
Q 021377          271 VAGFYAVMWGKS  282 (313)
Q Consensus       271 i~g~~l~~~~~~  282 (313)
                      +.|+++..+.++
T Consensus       279 ~~gv~~~~~~~~  290 (295)
T PRK11689        279 TAGSLLCWLATR  290 (295)
T ss_pred             HHhHHHHhhhHh
Confidence            999988865443

>PRK10532 threonine and homoserine efflux system; Provisional

Probab=99.95  E-value=3.2e-26  Score=207.11  Aligned_cols=220  Identities=9%  Similarity=0.020  Sum_probs=175.9

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHhccccChhhHhHhhhhhHHHHHHHHHHHhhhcccccccccCcchhhHHhhhhhhh
Q 021377           28 LTFSILCSFFLLSVFGCSSQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAF  107 (313)
Q Consensus        28 ~~~~~~~~~~~~g~~~~~~~~~~~~al~~~~~~~a~ii~~~~P~~~~l~a~~~~~E~~~~~~~~~~~~~~g~~l~~~Gv~  107 (313)
                      .++|+++..+..|.+....+.++++++++++++.++++.++.|+++.+++.    |++.        +..++.++++|+.
T Consensus        66 ~~~~~~~~~~~~g~~~~~~~~~~~~al~~~~~~~a~~l~~t~Pi~~~ll~~----~~~~--------~~~~~~i~~~Gv~  133 (293)
T PRK10532         66 FAKEQRLPLLFYGVSLGGMNYLFYLSIQTVPLGIAVALEFTGPLAVALFSS----RRPV--------DFVWVVLAVLGLW  133 (293)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhc----CChH--------HHHHHHHHHHHHh
Confidence            456788888888887777888999999999999999999999999988873    5443        4456778899998


Q ss_pred             hheeecCCCCcCCCCCCCCCCccCCCCCccchhHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHH
Q 021377          108 VVTFYKGPPLIGELSHSGSPRRLLLSPQLSWILGGFFLAAEAFMNSAWFILQALILRKFAAVLIIMFYLFFFNTILSTAF  187 (313)
Q Consensus       108 ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~s~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~  187 (313)
                      ++.. .+.                 +.+.....|++++++++++|+.|.+..|+..+++ ++... .+...++++.+.++
T Consensus       134 li~~-~~~-----------------~~~~~~~~G~ll~l~aa~~~a~~~v~~r~~~~~~-~~~~~-~~~~~~~~~~l~~~  193 (293)
T PRK10532        134 FLLP-LGQ-----------------DVSHVDLTGAALALGAGACWAIYILSGQRAGAEH-GPATV-AIGSLIAALIFVPI  193 (293)
T ss_pred             eeee-cCC-----------------CcccCChHHHHHHHHHHHHHHHHHHHHHHHhccC-CchHH-HHHHHHHHHHHHHH
Confidence            8742 111                 0111234699999999999999999999988776 36655 46667777777776


Q ss_pred             HHHhccCCCcccccchhHHHHHHHHHHHHHHHHHHHHHHHhccCCceeeeechhhHHHHHHHHHHHHhcCccchhhHHHH
Q 021377          188 ALIVVSEPSDWKLGLDIGLVAVLYSAVIGTGFRVGLCTWCLSRTGPLYVSMFKPLAIVFSIVMDVVIVGDAFCLGSLIGA  267 (313)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~~~~ll~~g~~~s~~~~~l~~~a~~~~~a~~~s~~~~~~pv~a~i~~~l~~ge~~~~~~~~G~  267 (313)
                      ....+. ...   .+...+..++|+|++++.++|.+|++++++.++++++.+.+++|+++++++++++||++++.+++|+
T Consensus       194 ~~~~~~-~~~---~~~~~~~~~l~lgv~~t~~~~~l~~~~~~~~~a~~as~~~~l~Pv~a~l~~~l~lgE~~~~~~~iG~  269 (293)
T PRK10532        194 GALQAG-EAL---WHWSILPLGLAVAILSTALPYSLEMIALTRLPTRTFGTLMSMEPALAAVSGMIFLGETLTLIQWLAL  269 (293)
T ss_pred             HHHccC-ccc---CCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhHHHHHHHhHHHHHHHHHHHHhCCCCcHHHHHHH
Confidence            654322 111   1223566678999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhccccc
Q 021377          268 MIIVAGFYAVMWGKSK  283 (313)
Q Consensus       268 ~lii~g~~l~~~~~~~  283 (313)
                      ++|+.|+....+.+++
T Consensus       270 ~lIl~~~~~~~~~~~~  285 (293)
T PRK10532        270 GAIIAASMGSTLTIRR  285 (293)
T ss_pred             HHHHHHHHHHHhcCCC
Confidence            9999999998766544

>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein

Probab=99.95  E-value=3.3e-26  Score=205.87  Aligned_cols=216  Identities=14%  Similarity=0.086  Sum_probs=165.4

Q ss_pred             HHHHHHHHHHHHH-HHHHHHHHHhccccChhhHhHhhhhhHHHHHHHHHHHhhhcccccccccCcchhhHHhhhhhhhhh
Q 021377           31 SILCSFFLLSVFG-CSSQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVV  109 (313)
Q Consensus        31 ~~~~~~~~~g~~~-~~~~~~~~~al~~~~~~~a~ii~~~~P~~~~l~a~~~~~E~~~~~~~~~~~~~~g~~l~~~Gv~ll  109 (313)
                      ++++.....+.++ ..++.+++.|+++.++++++++.++.|+++.+++++++|||++++      +++|+.+++.|+.++
T Consensus        60 ~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~p~~~~l~~~~~~~e~~~~~------~~~g~~~~~~Gv~ll  133 (281)
T TIGR03340        60 ATFWLLLAISAVANMVYFLGLAQAYHHADVGLVYPLARSSPLLVAIWATLTLGETLSPL------AWLGILIITLGLLVL  133 (281)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHhcCChhhhhhHHhhhHHHHHHHHHHHHcCCCCHH------HHHHHHHHHHHHHHH
Confidence            3444444444444 999999999999999999999999999999999999999999999      999999999999988


Q ss_pred             eeecCCCCcCCCCCCCCCCccCCCCCccchhHHHHHHHHHHHHHHHHHHHHHHhhhchhHH----HHHHHHHHHHHHHHH
Q 021377          110 TFYKGPPLIGELSHSGSPRRLLLSPQLSWILGGFFLAAEAFMNSAWFILQALILRKFAAVL----IIMFYLFFFNTILST  185 (313)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~s~~~~a~~~v~~k~~~~~~~~~~----~~~~~~~~~~~~~~~  185 (313)
                      .. ++.                   ......|..++++++++|+.|.+..|+..++.+ +.    ..+.+.+..+++...
T Consensus       134 ~~-~~~-------------------~~~~~~g~~~~l~aal~~a~~~i~~k~~~~~~~-~~~~~~~~~~~~~~~~~~~~~  192 (281)
T TIGR03340       134 GL-SRF-------------------AQHRRKAYAWALAAALGTAIYSLSDKAAALGVP-AFYSALGYLGIGFLAMGWPFL  192 (281)
T ss_pred             hc-ccc-------------------cccchhHHHHHHHHHHHHHHhhhhccccccchh-cccccHHHHHHHHHHHHHHHH
Confidence            42 110                   011235888999999999999999887654442 22    122233222212111


Q ss_pred             HHHHHhccCCCcccccchhHHHHHHHHHHHHHHHHHHHHHHHhccCCceeeeechhhHHHHHHHHHHHHhcCccchhhHH
Q 021377          186 AFALIVVSEPSDWKLGLDIGLVAVLYSAVIGTGFRVGLCTWCLSRTGPLYVSMFKPLAIVFSIVMDVVIVGDAFCLGSLI  265 (313)
Q Consensus       186 ~~~~~~~~~~~~~~~~~~~~~~~ll~~g~~~s~~~~~l~~~a~~~~~a~~~s~~~~~~pv~a~i~~~l~~ge~~~~~~~~  265 (313)
                      +.....+..  ... .....+..+++.+.+++.++|.+|++++++.++++++.+.+++|+++++++++++||++++.+++
T Consensus       193 ~~~~~~~~~--~~~-~~~~~~~~~~~~~~~~s~l~~~l~~~al~~~~a~~~~~~~~l~pv~a~l~g~~~lgE~~~~~~~i  269 (281)
T TIGR03340       193 LLYLKRHGR--SMF-PYARQILPSATLGGLMIGGAYALVLWAMTRLPVATVVALRNTSIVFAVVLGIWFLNERWYLTRLM  269 (281)
T ss_pred             HHHHHHhcc--chh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCceEEEeecccHHHHHHHHHHHHhCCCccHHHHH
Confidence            211111111  111 12235667788888899999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHH
Q 021377          266 GAMIIVAGFYA  276 (313)
Q Consensus       266 G~~lii~g~~l  276 (313)
                      |+++++.|+++
T Consensus       270 G~~lil~Gv~l  280 (281)
T TIGR03340       270 GVCIIVAGLVV  280 (281)
T ss_pred             HHHHHHHhHHh
Confidence            99999999875

This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.

>PRK15430 putative chloramphenical resistance permease RarD; Provisional

Probab=99.94  E-value=1.5e-25  Score=203.12  Aligned_cols=208  Identities=14%  Similarity=0.091  Sum_probs=159.1

Q ss_pred             HHHHHHH-HHHHHHHHHhccccChhhHhHhhhhhHHHHHHHHHHHhhhcccccccccCcchhhHHhhhhhhhhheeecCC
Q 021377           37 FLLSVFG-CSSQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVTFYKGP  115 (313)
Q Consensus        37 ~~~g~~~-~~~~~~~~~al~~~~~~~a~ii~~~~P~~~~l~a~~~~~E~~~~~~~~~~~~~~g~~l~~~Gv~ll~~~~~~  115 (313)
                      ...+.++ +.++.++++|++++++++++++.++.|+++.+++++++|||++++      ++.|++++++|+.++..   +
T Consensus        76 ~~~~~~~~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~v~l~~~~~l~E~~~~~------~~~g~~l~~~Gv~li~~---~  146 (296)
T PRK15430         76 LAVSAVLIGGNWLLFIWAVNNHHMLEASLGYFINPLVNIVLGMIFLGERFRRM------QWLAVILAICGVLVQLW---T  146 (296)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHhcCCCcHH------HHHHHHHHHHHHHHHHH---H
Confidence            3356566 899999999999999999999999999999999999999999999      99999999999999842   1


Q ss_pred             CCcCCCCCCCCCCccCCCCCccchhHHHHHHHHHHHHHHHHHHHHHHhhhc-hhHHHHHHHHHHHHHHHHHHHHHHhccC
Q 021377          116 PLIGELSHSGSPRRLLLSPQLSWILGGFFLAAEAFMNSAWFILQALILRKF-AAVLIIMFYLFFFNTILSTAFALIVVSE  194 (313)
Q Consensus       116 ~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~s~~~~a~~~v~~k~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~  194 (313)
                                       . ++.    ..+.++++++||.|.+..|+..++. .+....+.+.+.++.....+..   ..+
T Consensus       147 -----------------~-~~~----~~~~l~aa~~~a~~~i~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~  201 (296)
T PRK15430        147 -----------------F-GSL----PIIALGLAFSFAFYGLVRKKIAVEAQTGMLIETMWLLPVAAIYLFAIA---DSS  201 (296)
T ss_pred             -----------------c-CCc----cHHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHHHHHHHc---cCC
Confidence                             0 000    1468889999999999999875432 1234445555555544332211   111


Q ss_pred             CCcccccchhHHHHHHHHHHHHHHHHHHHHHHHhccCCceeeeechhhHHHHHHHHHHHHhcCccchhhHHHHHHHHHHH
Q 021377          195 PSDWKLGLDIGLVAVLYSAVIGTGFRVGLCTWCLSRTGPLYVSMFKPLAIVFSIVMDVVIVGDAFCLGSLIGAMIIVAGF  274 (313)
Q Consensus       195 ~~~~~~~~~~~~~~ll~~g~~~s~~~~~l~~~a~~~~~a~~~s~~~~~~pv~a~i~~~l~~ge~~~~~~~~G~~lii~g~  274 (313)
                      ...+...+...+..+++.|+ .+.++|.+|++++++.++++++.+.+++|+++++++++++||++++.+++|+++|+.|+
T Consensus       202 ~~~~~~~~~~~~~~~~~~g~-~t~i~~~~~~~a~~~~~a~~~s~~~~l~Pv~a~~~g~l~l~E~~~~~~~~G~~lI~~~~  280 (296)
T PRK15430        202 TSHMGQNPMSLNLLLIAAGI-VTTVPLLCFTAAATRLRLSTLGFFQYIGPTLMFLLAVTFYGEKPGADKMVTFAFIWVAL  280 (296)
T ss_pred             cccccCCcHHHHHHHHHHHH-HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence            11111111112333444555 68899999999999999999999999999999999999999999999999999998887


Q ss_pred             HHHhc
Q 021377          275 YAVMW  279 (313)
Q Consensus       275 ~l~~~  279 (313)
                      .+...
T Consensus       281 ~v~~~  285 (296)
T PRK15430        281 AIFVM  285 (296)
T ss_pred             HHHHH
Confidence            77653

>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function

Probab=99.94  E-value=9.6e-25  Score=197.83  Aligned_cols=237  Identities=18%  Similarity=0.237  Sum_probs=195.8

Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHhccccChhhHhHhhhhhHHHHHHHHHHHhhhcccccccccCcchhhHHhhhhhhhh
Q 021377           29 TFSILCSFFLLSVFGCSSQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFV  108 (313)
Q Consensus        29 ~~~~~~~~~~~g~~~~~~~~~~~~al~~~~~~~a~ii~~~~P~~~~l~a~~~~~E~~~~~~~~~~~~~~g~~l~~~Gv~l  108 (313)
                      .+++|+++++++++...++++...|++|++.+.++++..+.-+++++++++++|||+++.      +++|+++++.|+.+
T Consensus        75 ~~~~~w~y~lla~~Dv~aN~~~v~a~~yTsvtS~~lL~~~~i~~~~~LS~~fL~~ry~~~------~~~gv~i~i~Gv~l  148 (334)
T PF06027_consen   75 LKRPWWKYFLLALLDVEANYLVVLAYQYTSVTSVQLLDCTSIPFVMILSFIFLKRRYSWF------HILGVLICIAGVVL  148 (334)
T ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHhhcccHhHHHhhhhhhhHHHHHHHHHHHHhhhhHH------HHHHHHHHHhhhhh
Confidence            456788899999999999999999999999999999999999999999999999999999      99999999999999


Q ss_pred             heeecCCCCcCCCCCCCCCCccCCCCCccchhHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHHH
Q 021377          109 VTFYKGPPLIGELSHSGSPRRLLLSPQLSWILGGFFLAAEAFMNSAWFILQALILRKFAAVLIIMFYLFFFNTILSTAFA  188 (313)
Q Consensus       109 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~s~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~  188 (313)
                      +.. .+. ..          ++++.++.+...|++++++|+++||.++++.++..++.+ .........++|.++..+..
T Consensus       149 v~~-sD~-~~----------~~~~~~~~~~i~GDll~l~~a~lya~~nV~~E~~v~~~~-~~~~lg~~Glfg~ii~~iq~  215 (334)
T PF06027_consen  149 VVV-SDV-LS----------GSDSSSGSNPILGDLLALLGAILYAVSNVLEEKLVKKAP-RVEFLGMLGLFGFIISGIQL  215 (334)
T ss_pred             eee-ecc-cc----------cccCCCCCccchhHHHHHHHHHHHHHHHHHHHHhcccCC-HHHHHHHHHHHHHHHHHHHH
Confidence            864 221 11          111123456689999999999999999999999999984 88888888899999888887


Q ss_pred             HHhccC-CCcccccchhHHHHHHHHHHHHHHHHHHHHHHHhccCCceeeeechhhHHHHHHHHHHHHhcCccchhhHHHH
Q 021377          189 LIVVSE-PSDWKLGLDIGLVAVLYSAVIGTGFRVGLCTWCLSRTGPLYVSMFKPLAIVFSIVMDVVIVGDAFCLGSLIGA  267 (313)
Q Consensus       189 ~~~~~~-~~~~~~~~~~~~~~ll~~g~~~s~~~~~l~~~a~~~~~a~~~s~~~~~~pv~a~i~~~l~~ge~~~~~~~~G~  267 (313)
                      .+.+.+ .+..+..  ......+....++...-|.+....++..+|+..++-.....+++++++++++|+++++..++|.
T Consensus       216 ~ile~~~i~~~~w~--~~~~~~~v~~~~~lf~~y~l~p~~l~~ssAt~~nLsLLTsd~~ali~~i~~f~~~~~~ly~~af  293 (334)
T PF06027_consen  216 AILERSGIESIHWT--SQVIGLLVGYALCLFLFYSLVPIVLRMSSATFFNLSLLTSDFYALIIDIFFFGYKFSWLYILAF  293 (334)
T ss_pred             HheehhhhhccCCC--hhhHHHHHHHHHHHHHHHHHHHHHHHhCccceeehHHHHhhHHHHHHHHHhcCccccHHHHHHH
Confidence            766542 2222222  2233333333446778888889999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhcccccccc
Q 021377          268 MIIVAGFYAVMWGKSKEEK  286 (313)
Q Consensus       268 ~lii~g~~l~~~~~~~~~~  286 (313)
                      ++|++|.+++...++++++
T Consensus       294 ~lIiiG~vvy~~~~~~~~~  312 (334)
T PF06027_consen  294 ALIIIGFVVYNLAESPEEE  312 (334)
T ss_pred             HHHHHHhheEEccCCcccc
Confidence            9999999998876655443

Some of the sequences in this family are annotated as putative membrane proteins.

>PTZ00343 triose or hexose phosphate/phosphate translocator; Provisional

Probab=99.93  E-value=3.7e-24  Score=197.95  Aligned_cols=223  Identities=15%  Similarity=0.169  Sum_probs=181.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhccccChhhHhHhhhhhHHHHHHHHHHHhhhcccccccccCcchhhHHhhhhhhhhh
Q 021377           30 FSILCSFFLLSVFGCSSQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVV  109 (313)
Q Consensus        30 ~~~~~~~~~~g~~~~~~~~~~~~al~~~~~~~a~ii~~~~P~~~~l~a~~~~~E~~~~~~~~~~~~~~g~~l~~~Gv~ll  109 (313)
                      ++++..++..|+++...+...+.|+++++++.++++.++.|+++++++++++|||++++      ++.++++++.|+.+.
T Consensus       111 ~~~~~~llp~gl~~~~~~~~~~~sl~~~svs~~~iika~~Pvft~lls~~~l~ek~s~~------~~l~l~l~v~Gv~l~  184 (350)
T PTZ00343        111 KLFLKNFLPQGLCHLFVHFGAVISMGLGAVSFTHVVKAAEPVFTALLSILFLKQFLNLY------AYLSLIPIVGGVALA  184 (350)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHhhHHHHHHHHHHHhCCCccHH------HHHHHHHHHHHHHhe
Confidence            45778889999999445666789999999999999999999999999999999999999      999999999999998


Q ss_pred             eeecCCCCcCCCCCCCCCCccCCCCCccchhHHHHHHHHHHHHHHHHHHHHHHhhhc------hhHHHHHHHHHHHHHHH
Q 021377          110 TFYKGPPLIGELSHSGSPRRLLLSPQLSWILGGFFLAAEAFMNSAWFILQALILRKF------AAVLIIMFYLFFFNTIL  183 (313)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~s~~~~a~~~v~~k~~~~~~------~~~~~~~~~~~~~~~~~  183 (313)
                      +.  +                  + .+....|++++++++++|+.|+++.|+..++.      .++.....++...+.++
T Consensus       185 ~~--~------------------~-~~~~~~G~~~~l~s~~~~a~~~i~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  243 (350)
T PTZ00343        185 SV--K------------------E-LHFTWLAFWCAMLSNLGSSLRSIFAKKTMKNKSEIGENLTASNIYMLLTLIASLI  243 (350)
T ss_pred             ec--c------------------c-chhHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccCCHHHHHHHHHHHHHHH
Confidence            52  1                  1 11235799999999999999999999987643      13555666778899999


Q ss_pred             HHHHHHHhccCC--Cccc----ccchhHHHHHHHHHHHHHHHHHHHHHH----HhccCCceeeeechhhHHHHHHHHHHH
Q 021377          184 STAFALIVVSEP--SDWK----LGLDIGLVAVLYSAVIGTGFRVGLCTW----CLSRTGPLYVSMFKPLAIVFSIVMDVV  253 (313)
Q Consensus       184 ~~~~~~~~~~~~--~~~~----~~~~~~~~~ll~~g~~~s~~~~~l~~~----a~~~~~a~~~s~~~~~~pv~a~i~~~l  253 (313)
                      ++|+....+...  ..+.    ......+..+++. ++.++++|.+|+.    +++++++.+.+...+++|+++++++++
T Consensus       244 ~lp~~~~~e~~~~~~~~~~~~~~~~~~~~~~~l~~-i~~s~l~~~l~n~~~f~~l~~~s~~t~sv~~~lk~V~~iv~s~l  322 (350)
T PTZ00343        244 SLPLVLFFEGKKWVPVWTNYTANMTNYTKGIIIFK-IFFSGVWYYLYNEVAFYCLGKVNQVTHAVANTLKRVVIIVSSII  322 (350)
T ss_pred             HHHHHHHHhhHHHHHHHHHhhhcccccchHHHHHH-HHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHhhhhHH
Confidence            999877554211  0110    0001122334554 5578999999995    999999999999999999999999999


Q ss_pred             HhcCccchhhHHHHHHHHHHHHHHhcc
Q 021377          254 IVGDAFCLGSLIGAMIIVAGFYAVMWG  280 (313)
Q Consensus       254 ~~ge~~~~~~~~G~~lii~g~~l~~~~  280 (313)
                      ++||++++.+++|.++++.|++++.+.
T Consensus       323 ~~ge~lt~~~~iG~~lii~Gv~lYs~~  349 (350)
T PTZ00343        323 IFQTQVTLLGYLGMAVAILGALLYSLF  349 (350)
T ss_pred             HhCCCCchHhHHHHHHHHHHHHHHhhc
Confidence            999999999999999999999998765

>COG0697 RhaT Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]

Probab=99.89  E-value=2.7e-21  Score=173.60  Aligned_cols=217  Identities=21%  Similarity=0.377  Sum_probs=174.5

Q ss_pred             HHHHHHHHHHH-HHHHHHHHHhccccChhhHhHhhhhhHHHHHHHHH-HHhhhcccccccccCcchhhHHhhhhhhhhhe
Q 021377           33 LCSFFLLSVFG-CSSQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAI-IFRLEKLNWENKSSQAKSLGTFASIGGAFVVT  110 (313)
Q Consensus        33 ~~~~~~~g~~~-~~~~~~~~~al~~~~~~~a~ii~~~~P~~~~l~a~-~~~~E~~~~~~~~~~~~~~g~~l~~~Gv~ll~  110 (313)
                      +++..+.+.++ ..++.+++.++++++++.++++.++.|+++.+++. ++++||++++      ++.++++++.|+.++.
T Consensus        69 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~e~~~~~------~~~~~~~~~~Gv~lv~  142 (292)
T COG0697          69 WLLLLLLALLGLALPFLLLFLALKYTSASVASLIIGLLPLFTALLAVLLLLGERLSLL------QILGILLALAGVLLIL  142 (292)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHccCCCcHH------HHHHHHHHHHhHHhee
Confidence            44556666666 99999999999999999999999999999999997 7779999999      9999999999999996


Q ss_pred             eecCCCCcCCCCCCCCCCccCCCCCccchhHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHH-HHHHHHHHHHHHHHH
Q 021377          111 FYKGPPLIGELSHSGSPRRLLLSPQLSWILGGFFLAAEAFMNSAWFILQALILRKFAAVLIIMF-YLFFFNTILSTAFAL  189 (313)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~s~~~~a~~~v~~k~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~  189 (313)
                      . .+..                ..+. ...|+.+.++++++|+.+.+..|+.. +. ++..... ++..  .........
T Consensus       143 ~-~~~~----------------~~~~-~~~g~~~~l~a~~~~a~~~~~~~~~~-~~-~~~~~~~~~~~~--~~~~~~~~~  200 (292)
T COG0697         143 L-GGGG----------------GGIL-SLLGLLLALAAALLWALYTALVKRLS-RL-GPVTLALLLQLL--LALLLLLLF  200 (292)
T ss_pred             c-CCCc----------------chhH-HHHHHHHHHHHHHHHHHHHHHHHHhc-CC-ChHHHHHHHHHH--HHHHHHHHH
Confidence            3 1110                0001 46899999999999999999999887 54 3555555 4433  122222222


Q ss_pred             HhccCCCcccccchhHHHHHHHHHHHHHHHHHHHHHHHhccCCceeeeechhhHHHHHHHHHHHHhcCccchhhHHHHHH
Q 021377          190 IVVSEPSDWKLGLDIGLVAVLYSAVIGTGFRVGLCTWCLSRTGPLYVSMFKPLAIVFSIVMDVVIVGDAFCLGSLIGAMI  269 (313)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~~ll~~g~~~s~~~~~l~~~a~~~~~a~~~s~~~~~~pv~a~i~~~l~~ge~~~~~~~~G~~l  269 (313)
                      ... +. + .......+..+.+.|+++++++|.+|++++++.++..++.+.+++|+++++++++++||+++..+++|+++
T Consensus       201 ~~~-~~-~-~~~~~~~~~~~~~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~l~~~e~~~~~~~~G~~l  277 (292)
T COG0697         201 FLS-GF-G-APILSRAWLLLLYLGVFSTGLAYLLWYYALRLLGASLVALLSLLEPVFAALLGVLLLGEPLSPAQLLGAAL  277 (292)
T ss_pred             Hhc-cc-c-ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHH
Confidence            111 11 1 12223478889999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcc
Q 021377          270 IVAGFYAVMWG  280 (313)
Q Consensus       270 ii~g~~l~~~~  280 (313)
                      ++.|+.+...+
T Consensus       278 i~~g~~l~~~~  288 (292)
T COG0697         278 VVLGVLLASLR  288 (292)
T ss_pred             HHHHHHHHhcc
Confidence            99999998766

>TIGR00688 rarD rarD protein

Probab=99.86  E-value=7.5e-21  Score=168.78  Aligned_cols=186  Identities=9%  Similarity=-0.013  Sum_probs=138.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhccccChhhHhHhhhhhHHHHHHHHHHHhhhcccccccccCcchhhHHhhhhhhhhheee
Q 021377           33 LCSFFLLSVFGCSSQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVTFY  112 (313)
Q Consensus        33 ~~~~~~~g~~~~~~~~~~~~al~~~~~~~a~ii~~~~P~~~~l~a~~~~~E~~~~~~~~~~~~~~g~~l~~~Gv~ll~~~  112 (313)
                      +..+...|++...++.+++.|++++++++++++.++.|+++++++++++|||++++      ++++++++++|+.++.. 
T Consensus        70 ~~~~~~~g~~~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~~~lla~~~l~Ek~~~~------~~l~~~~~~~Gv~li~~-  142 (256)
T TIGR00688        70 ILSLLLCGLLIGFNWWLFIWAVNNGSSLEVSLGYLINPLVMVALGRVFLKERISRF------QFIAVIIATLGVISNIV-  142 (256)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHHHhcCCCHH------HHHHHHHHHHHHHHHHH-
Confidence            44566777777999999999999999999999999999999999999999999999      99999999999998742 


Q ss_pred             cCCCCcCCCCCCCCCCccCCCCCccchhHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHhc
Q 021377          113 KGPPLIGELSHSGSPRRLLLSPQLSWILGGFFLAAEAFMNSAWFILQALILRKFAAVLIIMFYLFFFNTILSTAFALIVV  192 (313)
Q Consensus       113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~s~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  192 (313)
                       +.                   +..    ..++++++++|+.|.+..|+..++.  ........ ........+......
T Consensus       143 -~~-------------------~~~----~~~~l~aa~~~a~~~i~~~~~~~~~--~~~~~~~~-~~~~~~~~~~~~~~~  195 (256)
T TIGR00688       143 -LK-------------------GSL----PWEALVLAFSFTAYGLIRKALKNTD--LAGFCLET-LSLMPVAIYYLLQTD  195 (256)
T ss_pred             -Hc-------------------CCc----hHHHHHHHHHHHHHHHHHhhcCCCC--cchHHHHH-HHHHHHHHHHHHHhc
Confidence             10                   000    1457889999999999999875432  22222211 111111111111111


Q ss_pred             cCCCcccccchhHHHHHHHHHHHHHHHHHHHHHHHhccCCceeeeechhhHHHHHHHHHHHH
Q 021377          193 SEPSDWKLGLDIGLVAVLYSAVIGTGFRVGLCTWCLSRTGPLYVSMFKPLAIVFSIVMDVVI  254 (313)
Q Consensus       193 ~~~~~~~~~~~~~~~~ll~~g~~~s~~~~~l~~~a~~~~~a~~~s~~~~~~pv~a~i~~~l~  254 (313)
                       ........+...|..+++.|++ +.++|.+|++++++.++++++.+.+++|+++++++++.
T Consensus       196 -~~~~~~~~~~~~~~~l~~~g~~-t~i~~~l~~~a~~~~~a~~~s~~~yl~Pv~~~~~~~~~  255 (256)
T TIGR00688       196 -FATVQQTNPFPIWLLLVLAGLI-TGTPLLAFVIAANRLPLNLLGLLQYIGPTIMMLCVSFL  255 (256)
T ss_pred             -cCcccccCchhHHHHHHHHHHH-HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHh
Confidence             1111111122368888888885 88999999999999999999999999999999999764

This uncharacterized protein is predicted to have many membrane-spanning domains.

>COG5006 rhtA Threonine/homoserine efflux transporter [Amino acid transport and metabolism]

Probab=99.86  E-value=2.1e-20  Score=158.25  Aligned_cols=227  Identities=12%  Similarity=0.035  Sum_probs=186.7

Q ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhccccChhhHhHhhhhhHHHHHHHHHHHhhhcccccccccCcchhhHHhh
Q 021377           23 TERPQLTFSILCSFFLLSVFGCSSQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFAS  102 (313)
Q Consensus        23 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~al~~~~~~~a~ii~~~~P~~~~l~a~~~~~E~~~~~~~~~~~~~~g~~l~  102 (313)
                      ..+.+++++++..+...|..-...|.++|.+++..|.+.+..+.++-|+..++++.      -+.+      +...+.++
T Consensus        61 Pwr~r~~~~~~~~~~~yGvsLg~MNl~FY~si~riPlGiAVAiEF~GPL~vA~~~s------Rr~~------d~vwvaLA  128 (292)
T COG5006          61 PWRRRLSKPQRLALLAYGVSLGGMNLLFYLSIERIPLGIAVAIEFTGPLAVALLSS------RRLR------DFVWVALA  128 (292)
T ss_pred             HHHhccChhhhHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhhccHHHHHHHhc------cchh------hHHHHHHH
Confidence            33456788999999999998899999999999999999999999999999888772      2333      67778889


Q ss_pred             hhhhhhheeecCCCCcCCCCCCCCCCccCCCCCccchhHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHH
Q 021377          103 IGGAFVVTFYKGPPLIGELSHSGSPRRLLLSPQLSWILGGFFLAAEAFMNSAWFILQALILRKFAAVLIIMFYLFFFNTI  182 (313)
Q Consensus       103 ~~Gv~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~s~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~  182 (313)
                      +.|+.++.- .++                 +.+..+..|..+++.+..||+.|.+..||..+..+ ...-+...+.++++
T Consensus       129 vlGi~lL~p-~~~-----------------~~~~lDp~Gv~~Al~AG~~Wa~YIv~G~r~g~~~~-g~~g~a~gm~vAav  189 (292)
T COG5006         129 VLGIWLLLP-LGQ-----------------SVWSLDPVGVALALGAGACWALYIVLGQRAGRAEH-GTAGVAVGMLVAAL  189 (292)
T ss_pred             HHHHHhhee-ccC-----------------CcCcCCHHHHHHHHHHhHHHHHHHHHcchhcccCC-CchHHHHHHHHHHH
Confidence            999998852 221                 12234568999999999999999999999987664 67788899999999


Q ss_pred             HHHHHHHHhccCCCcccccchhHHHHHHHHHHHHHHHHHHHHHHHhccCCceeeeechhhHHHHHHHHHHHHhcCccchh
Q 021377          183 LSTAFALIVVSEPSDWKLGLDIGLVAVLYSAVIGTGFRVGLCTWCLSRTGPLYVSMFKPLAIVFSIVMDVVIVGDAFCLG  262 (313)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~g~~~s~~~~~l~~~a~~~~~a~~~s~~~~~~pv~a~i~~~l~~ge~~~~~  262 (313)
                      +.+|+.....+ .   ....+.-+..-+..+++++.+.|.+=..+++|.+....+.+..++|.++.+.+++++||.+++.
T Consensus       190 iv~Pig~~~ag-~---~l~~p~ll~laLgvavlSSalPYsLEmiAL~rlp~~~F~~LlSLePa~aAl~G~i~L~e~ls~~  265 (292)
T COG5006         190 IVLPIGAAQAG-P---ALFSPSLLPLALGVAVLSSALPYSLEMIALRRLPARTFGTLLSLEPALAALSGLIFLGETLTLI  265 (292)
T ss_pred             HHhhhhhhhcc-h---hhcChHHHHHHHHHHHHhcccchHHHHHHHhhCChhHHHHHHHhhHHHHHHHHHHHhcCCCCHH
Confidence            99998863322 1   1222224556678899999999999999999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHHHHhcccccc
Q 021377          263 SLIGAMIIVAGFYAVMWGKSKE  284 (313)
Q Consensus       263 ~~~G~~lii~g~~l~~~~~~~~  284 (313)
                      ||.|+.+|+.+..-..+..+|+
T Consensus       266 qwlaI~~ViaAsaG~~lt~~~~  287 (292)
T COG5006         266 QWLAIAAVIAASAGSTLTARKP  287 (292)
T ss_pred             HHHHHHHHHHHHhccccccCCC
Confidence            9999999998887666554443

>KOG4510 consensus Permease of the drug/metabolite transporter (DMT) superfamily [General function prediction only]

Probab=99.84  E-value=8.7e-22  Score=167.69  Aligned_cols=229  Identities=17%  Similarity=0.175  Sum_probs=178.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHhccccChhhHhHhhhhhHHHHHHHHHHHhhhcccccccccCcchhhHHhhhhhhhhheeec
Q 021377           34 CSFFLLSVFGCSSQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVTFYK  113 (313)
Q Consensus        34 ~~~~~~g~~~~~~~~~~~~al~~~~~~~a~ii~~~~P~~~~l~a~~~~~E~~~~~~~~~~~~~~g~~l~~~Gv~ll~~~~  113 (313)
                      .+++++|+.|..+...+|+|++|++.+++++|..+.|.++.+++|.++|||.++.      +.++..+.+.|+.++.  +
T Consensus        98 ~~LiLRg~mG~tgvmlmyya~~~mslaDA~vItFssPvft~ifaw~~LkE~~t~~------eaL~s~itl~GVVLIv--R  169 (346)
T KOG4510|consen   98 KWLILRGFMGFTGVMLMYYALMYMSLADAVVITFSSPVFTIIFAWAFLKEPFTKF------EALGSLITLLGVVLIV--R  169 (346)
T ss_pred             EEEEeehhhhhhHHHHHHHHHhhcchhheEEEEecChHHHHHHHHHHHcCCCcHH------HHHHHHHhhheEEEEe--c
Confidence            3456789999888899999999999999999999999999999999999999999      9999999999999985  3


Q ss_pred             CCCCcCCCCCCCCCCccCCCCCccchhHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHhcc
Q 021377          114 GPPLIGELSHSGSPRRLLLSPQLSWILGGFFLAAEAFMNSAWFILQALILRKFAAVLIIMFYLFFFNTILSTAFALIVVS  193 (313)
Q Consensus       114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~s~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  193 (313)
                      .+.+-+.     ++++++.+.-.....|...++.+++..|--.++.|+..++. +-.....|..+++.+...+.....+ 
T Consensus       170 PpFlFG~-----~t~g~~~s~~~~~~~gt~aai~s~lf~asvyIilR~iGk~~-h~~msvsyf~~i~lV~s~I~~~~ig-  242 (346)
T KOG4510|consen  170 PPFLFGD-----TTEGEDSSQVEYDIPGTVAAISSVLFGASVYIILRYIGKNA-HAIMSVSYFSLITLVVSLIGCASIG-  242 (346)
T ss_pred             CCcccCC-----CccccccccccccCCchHHHHHhHhhhhhHHHHHHHhhccc-cEEEEehHHHHHHHHHHHHHHhhcc-
Confidence            3333222     11111111112334577888888888887778888887766 3555556666777666655544222 


Q ss_pred             CCCccccc-chhHHHHHHHHHHHHHHHHHHHHHHHhccCCceeeeechhhHHHHHHHHHHHHhcCccchhhHHHHHHHHH
Q 021377          194 EPSDWKLG-LDIGLVAVLYSAVIGTGFRVGLCTWCLSRTGPLYVSMFKPLAIVFSIVMDVVIVGDAFCLGSLIGAMIIVA  272 (313)
Q Consensus       194 ~~~~~~~~-~~~~~~~ll~~g~~~s~~~~~l~~~a~~~~~a~~~s~~~~~~pv~a~i~~~l~~ge~~~~~~~~G~~lii~  272 (313)
                         .+..+ ...+|+..+.+|++ ..+++.+.+.++|+-.+..+++..+.+.+++.++.++++||.|+++.|.|+++++.
T Consensus       243 ---~~~lP~cgkdr~l~~~lGvf-gfigQIllTm~lQiErAGpvaim~~~dvvfAf~wqv~ff~~~Pt~ws~~Ga~~vvs  318 (346)
T KOG4510|consen  243 ---AVQLPHCGKDRWLFVNLGVF-GFIGQILLTMGLQIERAGPVAIMTYTDVVFAFFWQVLFFGHWPTIWSWVGAVMVVS  318 (346)
T ss_pred             ---ceecCccccceEEEEEehhh-hhHHHHHHHHHhhhhccCCeehhhHHHHHHHHHHHHHHhcCCChHHHhhceeeeeh
Confidence               22222 23467788889984 56999999999999999999999999999999999999999999999999999998


Q ss_pred             HHHHHhccc
Q 021377          273 GFYAVMWGK  281 (313)
Q Consensus       273 g~~l~~~~~  281 (313)
                      ..+.....|
T Consensus       319 S~v~~a~~k  327 (346)
T KOG4510|consen  319 STVWVALKK  327 (346)
T ss_pred             hHHHHHHHH
Confidence            777665433

>KOG2765 consensus Predicted membrane protein [Function unknown]

Probab=99.81  E-value=1.2e-18  Score=155.22  Aligned_cols=236  Identities=21%  Similarity=0.259  Sum_probs=186.3

Q ss_pred             CHHHHHH-HHHHHHHHHHHHHHHHHhccccChhhHhHhhhhhHHHHHHHHHHHhhhcccccccccCcchhhHHhhhhhhh
Q 021377           29 TFSILCS-FFLLSVFGCSSQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAF  107 (313)
Q Consensus        29 ~~~~~~~-~~~~g~~~~~~~~~~~~al~~~~~~~a~ii~~~~P~~~~l~a~~~~~E~~~~~~~~~~~~~~g~~l~~~Gv~  107 (313)
                      +.++-.+ .+....+-+++++++..|+.+++++..+++.++.-+|+.+++.++.+||+++.      |.+++++++.|++
T Consensus       154 t~~~~ak~sl~fc~lWF~anl~~naALa~TsVAS~TilSStSs~FtL~la~if~~e~ft~s------Kllav~~si~GVi  227 (416)
T KOG2765|consen  154 TATQTAKLSLFFCPLWFLANLTSNAALAFTSVASTTILSSTSSFFTLFLAAIFPVERFTLS------KLLAVFVSIAGVI  227 (416)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhcchHHHHHHHHHcCcchhhHH------HHHHHHHhhccEE
Confidence            3334433 44445555999999999999999999999999999999999999999999999      9999999999999


Q ss_pred             hheeecCCCCcCCCCCCCCCCccCCCCCccchhHHHHHHHHHHHHHHHHHHHHHHhhhch---hHHHHHHHHHHHHHHHH
Q 021377          108 VVTFYKGPPLIGELSHSGSPRRLLLSPQLSWILGGFFLAAEAFMNSAWFILQALILRKFA---AVLIIMFYLFFFNTILS  184 (313)
Q Consensus       108 ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~s~~~~a~~~v~~k~~~~~~~---~~~~~~~~~~~~~~~~~  184 (313)
                      ++...+..  +           .++....+...|+++++++++.||.|.++.||...+..   |...+-.+.-++..+++
T Consensus       228 iVt~~~s~--~-----------~~~~~a~~~llG~llaL~sA~~YavY~vllk~~~~~eg~rvdi~lffGfvGLfnllll  294 (416)
T KOG2765|consen  228 IVTMGDSK--Q-----------NSDLPASRPLLGNLLALLSALLYAVYTVLLKRKIGDEGERVDIQLFFGFVGLFNLLLL  294 (416)
T ss_pred             EEEecccc--c-----------cccCCccchhHHHHHHHHHHHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHHH
Confidence            99752221  1           11233445678999999999999999999998765541   23333334444445555


Q ss_pred             HHHHHHhcc-CCCcccccchhHHHHHHHHHHHHHHHHHHHHHHHhccCCceeeeechhhHHHHHHHHHHHHhcCccchhh
Q 021377          185 TAFALIVVS-EPSDWKLGLDIGLVAVLYSAVIGTGFRVGLCTWCLSRTGPLYVSMFKPLAIVFSIVMDVVIVGDAFCLGS  263 (313)
Q Consensus       185 ~~~~~~~~~-~~~~~~~~~~~~~~~ll~~g~~~s~~~~~l~~~a~~~~~a~~~s~~~~~~pv~a~i~~~l~~ge~~~~~~  263 (313)
                      .|..++... ..+.++.+.......++..+.+++.++-++|.+|.-..++.++++-+.++.+.+++.+.++=|..+++.+
T Consensus       295 wP~l~iL~~~~~e~F~lP~~~q~~~vv~~~ligtvvSDylW~~a~~lTs~Lv~TlgmSltIPLA~~aD~l~k~~~~S~~~  374 (416)
T KOG2765|consen  295 WPPLIILDFFGEERFELPSSTQFSLVVFNNLIGTVVSDYLWAKAVLLTSPLVVTLGMSLTIPLAMFADVLIKGKHPSALY  374 (416)
T ss_pred             hHHHHHHHHhccCcccCCCCceeEeeeHhhHHHHHHHHHHHHHHHHhccchhheeeeeEeeeHHHHHHHHHcCCCCCHHH
Confidence            544433221 3456666655566677788899999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhccccc
Q 021377          264 LIGAMIIVAGFYAVMWGKSK  283 (313)
Q Consensus       264 ~~G~~lii~g~~l~~~~~~~  283 (313)
                      ++|.+.|+.|.+++.+..+.
T Consensus       375 iiGsi~Ifv~Fv~vn~~~~~  394 (416)
T KOG2765|consen  375 IIGSIPIFVGFVIVNISSEN  394 (416)
T ss_pred             HHHHHHHHHHHhheeccccc
Confidence            99999999999998765443

>PF08449 UAA: UAA transporter family; InterPro: IPR013657 This family includes transporters with a specificity for UDP-N-acetylglucosamine []

Probab=99.80  E-value=1e-17  Score=152.27  Aligned_cols=238  Identities=16%  Similarity=0.205  Sum_probs=189.7

Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHhccccChhhHhHhhhhhHHHHHHHHHHHhhhcccccccccCcchhhHHhhhhhhhh
Q 021377           29 TFSILCSFFLLSVFGCSSQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFV  108 (313)
Q Consensus        29 ~~~~~~~~~~~g~~~~~~~~~~~~al~~~~~~~a~ii~~~~P~~~~l~a~~~~~E~~~~~~~~~~~~~~g~~l~~~Gv~l  108 (313)
                      +++.++.++..+++..++..+...+++|+|...-.++..+.|+++++++.+++|+|++++      ++.++++..+|+++
T Consensus        60 ~~~~~~~~~~~~~~~~~~~~~~~~al~~i~~p~~~~~ks~~~i~vmi~~~l~~~k~y~~~------~~~~v~li~~Gv~~  133 (303)
T PF08449_consen   60 RKIPLKKYAILSFLFFLASVLSNAALKYISYPTQIVFKSSKPIPVMILGVLILGKRYSRR------QYLSVLLITIGVAI  133 (303)
T ss_pred             CcChHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHhhhHHHHHHHHHHHhcCccccHH------HHHHHHHHHhhHhe
Confidence            344466777888888999999999999999999999999999999999999999999999      99999999999999


Q ss_pred             heeecCCCCcCCCCCCCCCCccCCCCCccchhHHHHHHHHHHHHHHHHHHHHHHhhhch-hHHHHHHHHHHHHHHHHHHH
Q 021377          109 VTFYKGPPLIGELSHSGSPRRLLLSPQLSWILGGFFLAAEAFMNSAWFILQALILRKFA-AVLIIMFYLFFFNTILSTAF  187 (313)
Q Consensus       109 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~s~~~~a~~~v~~k~~~~~~~-~~~~~~~~~~~~~~~~~~~~  187 (313)
                      ....+....+           .++.....+..|+++.+++.++.+...+.++|..++++ ++...++|...++.+...+.
T Consensus       134 ~~~~~~~~~~-----------~~~~~~~~~~~G~~ll~~sl~~~a~~~~~qe~~~~~~~~~~~~~mfy~n~~~~~~~~~~  202 (303)
T PF08449_consen  134 FTLSDSSSSS-----------SSNSSSFSSALGIILLLLSLLLDAFTGVYQEKLFKKYGKSPWELMFYTNLFSLPFLLIL  202 (303)
T ss_pred             eeeccccccc-----------ccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHH
Confidence            8652211110           01111222334999999999999999999999876543 57899999999999988887


Q ss_pred             HHH--hccCCCc--ccccchhHHHHHHHHHHHHHHHHHHHHHHHhccCCceeeeechhhHHHHHHHHHHHHhcCccchhh
Q 021377          188 ALI--VVSEPSD--WKLGLDIGLVAVLYSAVIGTGFRVGLCTWCLSRTGPLYVSMFKPLAIVFSIVMDVVIVGDAFCLGS  263 (313)
Q Consensus       188 ~~~--~~~~~~~--~~~~~~~~~~~ll~~g~~~s~~~~~l~~~a~~~~~a~~~s~~~~~~pv~a~i~~~l~~ge~~~~~~  263 (313)
                      ...  .++..+.  +....+..+..++...+ +..+++...++..++.++...+.+..++-+++++++++++|+++++.+
T Consensus       203 ~~~l~~~~~~~~~~f~~~~p~~~~~l~~~s~-~~~~g~~~i~~~~~~~~al~~t~v~t~Rk~~sillS~~~f~~~~~~~~  281 (303)
T PF08449_consen  203 LFLLPTGEFRSAIRFISAHPSVLLYLLLFSL-TGALGQFFIFYLIKKFSALTTTIVTTLRKFLSILLSVIIFGHPLSPLQ  281 (303)
T ss_pred             HHHHHhhHhhHHHHHHHHhHHHHHHHHHHHH-HHHHHHHHHHHHHHhcCchhhhhHHHHHHHHHHHHHHHhcCCcCChHH
Confidence            765  2221111  11111223444444444 667888888899999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhcccccc
Q 021377          264 LIGAMIIVAGFYAVMWGKSKE  284 (313)
Q Consensus       264 ~~G~~lii~g~~l~~~~~~~~  284 (313)
                      |+|.++++.|..+..+.|+|+
T Consensus       282 ~~G~~lv~~g~~~~~~~~~k~  302 (303)
T PF08449_consen  282 WIGIVLVFAGIFLYSYAKKKK  302 (303)
T ss_pred             HHHHHHhHHHHHHHHHhhccC
Confidence            999999999999998877664

; GO: 0055085 transmembrane transport

>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein

Probab=99.80  E-value=5.6e-18  Score=152.88  Aligned_cols=220  Identities=13%  Similarity=0.136  Sum_probs=167.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhccccChhhHhHhhh-hhHHHHHHHHHHHhhhcccccccccCcc----hhhHHhhhh
Q 021377           30 FSILCSFFLLSVFGCSSQIFSFVGIQYSSPTLSTAMLN-LIPAFTFVLAIIFRLEKLNWENKSSQAK----SLGTFASIG  104 (313)
Q Consensus        30 ~~~~~~~~~~g~~~~~~~~~~~~al~~~~~~~a~ii~~-~~P~~~~l~a~~~~~E~~~~~~~~~~~~----~~g~~l~~~  104 (313)
                      ++.+..-++.|.+-..++++++.++++++.+.+..+.+ +.|++..+.+.+++|||.+++      +    ++|+++.++
T Consensus        56 ~~~~~~g~l~G~~w~ig~~~~~~ai~~~gva~a~~i~~~~~~v~~~l~~~~~f~e~~t~~------~~~~~~~g~~l~l~  129 (290)
T TIGR00776        56 LSIFLVGLLSGAFWALGQINQFKSMRYMGVSKTMPISTGFQLVGGTLFGVIVFGEWSTSI------QTLLGLLALILIII  129 (290)
T ss_pred             cHHHHHHHHHHHHHHhhhhhHHHHHHHHhHHHHhHHHHHHHHHHHHHHHHHHhhhccchH------HHHHHHHHHHHHHH
Confidence            33444455556655889999999999999999999988 888999999999999999999      8    999999999


Q ss_pred             hhhhheeecCCCCcCCCCCCCCCCccCCCCCccchhHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHH---HHH
Q 021377          105 GAFVVTFYKGPPLIGELSHSGSPRRLLLSPQLSWILGGFFLAAEAFMNSAWFILQALILRKFAAVLIIMFYLFF---FNT  181 (313)
Q Consensus       105 Gv~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~s~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~---~~~  181 (313)
                      |+.++...++...             ++++..+...|.+++++++++|+.|.+..|+.  ++ +|....+.++.   .++
T Consensus       130 G~~l~~~~~~~~~-------------~~~~~~~~~~Gi~~~l~sg~~y~~~~~~~~~~--~~-~~~~~~~~~~~g~~~~~  193 (290)
T TIGR00776       130 GVYLTSRSKDKSA-------------GIKSEFNFKKGILLLLMSTIGYLVYVVVAKAF--GV-DGLSVLLPQAIGMVIGG  193 (290)
T ss_pred             hHheEEecccccc-------------ccccccchhhHHHHHHHHHHHHHHHHHHHHHc--CC-CcceehhHHHHHHHHHH
Confidence            9988853111100             00000234679999999999999999999976  35 57777544444   333


Q ss_pred             HHHHHHHHHhccCCCcccccchhHHHHHHHHHHHHHHHHHHHHHHHhc-cCCceeeeechhhHHHHHHHHHHHHhcCccc
Q 021377          182 ILSTAFALIVVSEPSDWKLGLDIGLVAVLYSAVIGTGFRVGLCTWCLS-RTGPLYVSMFKPLAIVFSIVMDVVIVGDAFC  260 (313)
Q Consensus       182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~g~~~s~~~~~l~~~a~~-~~~a~~~s~~~~~~pv~a~i~~~l~~ge~~~  260 (313)
                      ++..+..  .. . .++  .....+..++ .|++ .+++|.+|..+.+ +.++++.+.+...+|+.+++++++++||..+
T Consensus       194 ~~~~~~~--~~-~-~~~--~~~~~~~~~~-~Gi~-~~ia~~~y~~~~~~~~~~~~~~~ls~~~pvia~~~~v~~l~E~~~  265 (290)
T TIGR00776       194 IIFNLGH--IL-A-KPL--KKYAILLNIL-PGLM-WGIGNFFYLFSAQPKVGVATSFSLSQLGVIISTLGGILILGEKKT  265 (290)
T ss_pred             HHHHHHH--hc-c-cch--HHHHHHHHHH-HHHH-HHHHHHHHHHHcccccchhhHHHHHHHHHHHHHHHHHHHhccCCC
Confidence            3333221  00 0 112  1222344444 8887 7999999999999 9999999999999999999999999999999


Q ss_pred             hhhH----HHHHHHHHHHHHHhc
Q 021377          261 LGSL----IGAMIIVAGFYAVMW  279 (313)
Q Consensus       261 ~~~~----~G~~lii~g~~l~~~  279 (313)
                      +.++    +|.++++.|+.+...
T Consensus       266 ~~~~~~~~iG~~lIi~~~~l~~~  288 (290)
T TIGR00776       266 KREMIAISVGIILIIIAANILGI  288 (290)
T ss_pred             cceeehhHHHHHHHHHHHHHHhc
Confidence            9999    999999999988654

These proteins are members of the L-Rhamnose Symporter (RhaT) Family (TC 2.A.7). This family includes two characterized members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.

>COG2962 RarD Predicted permeases [General function prediction only]

Probab=99.68  E-value=4.7e-15  Score=129.08  Aligned_cols=219  Identities=12%  Similarity=0.087  Sum_probs=175.5

Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHhccccChhhHhHhhhhhHHHHHHHHHHHhhhcccccccccCcchhhHHhhhhhhhh
Q 021377           29 TFSILCSFFLLSVFGCSSQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFV  108 (313)
Q Consensus        29 ~~~~~~~~~~~g~~~~~~~~~~~~al~~~~~~~a~ii~~~~P~~~~l~a~~~~~E~~~~~~~~~~~~~~g~~l~~~Gv~l  108 (313)
                      ++|.+..+.+.+++-..+...+.+|.+.-..-+++.=++..|++.++++.+++|||+++.      |+++++++.+||..
T Consensus        68 ~p~~~~~~~l~a~li~~nW~lfiWAvn~g~~leaSLGY~InPL~~VllG~lflkErls~~------Q~iAV~lA~~GV~~  141 (293)
T COG2962          68 QPKTLLMLALTALLIGLNWWLFIWAVNNGHVLEASLGYFINPLVNVLLGRLFLKERLSRL------QWIAVGLAAAGVLI  141 (293)
T ss_pred             CcHHHHHHHHHHHHHHHHHHHhheecCCCchhHHHhHHHHHHHHHHHHHHHHHHhhccHH------HHHHHHHHHHHHHH
Confidence            456677777777777999999999999999999999999999999999999999999999      99999999999998


Q ss_pred             heeecCCCCcCCCCCCCCCCccCCCCCccchhHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHHH
Q 021377          109 VTFYKGPPLIGELSHSGSPRRLLLSPQLSWILGGFFLAAEAFMNSAWFILQALILRKFAAVLIIMFYLFFFNTILSTAFA  188 (313)
Q Consensus       109 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~s~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~  188 (313)
                      .+...|.                    ..     ..++.=+++|+.|..+.|+.  +. |..+..+.-++.-....+...
T Consensus       142 ~~~~~g~--------------------lp-----wval~la~sf~~Ygl~RK~~--~v-~a~~g~~lE~l~l~p~al~yl  193 (293)
T COG2962         142 QTWLLGS--------------------LP-----WVALALALSFGLYGLLRKKL--KV-DALTGLTLETLLLLPVALIYL  193 (293)
T ss_pred             HHHHcCC--------------------Cc-----HHHHHHHHHHHHHHHHHHhc--CC-chHHhHHHHHHHHhHHHHHHH
Confidence            8652121                    11     34556678999999987765  33 356666666666555555554


Q ss_pred             HHhccCCCcccccchhHHHHHHHHHHHHHHHHHHHHHHHhccCCceeeeechhhHHHHHHHHHHHHhcCccchhhHHHHH
Q 021377          189 LIVVSEPSDWKLGLDIGLVAVLYSAVIGTGFRVGLCTWCLSRTGPLYVSMFKPLAIVFSIVMDVVIVGDAFCLGSLIGAM  268 (313)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~~~ll~~g~~~s~~~~~l~~~a~~~~~a~~~s~~~~~~pv~a~i~~~l~~ge~~~~~~~~G~~  268 (313)
                      +..+.+...........+..+...|+ .|++...+|..+-++++-+..+.+.|.+|..-.+++++++||+++..+++..+
T Consensus       194 ~~l~~~~~~~~~~~~~~~~LLv~aG~-vTavpL~lf~~aa~~lpls~~G~lqYi~Ptl~fllav~i~~E~~~~~~~~~F~  272 (293)
T COG2962         194 LFLADSGQFLQQNANSLWLLLVLAGL-VTAVPLLLFAAAAKRLPLSTLGFLQYIEPTLMFLLAVLIFGEPFDSDQLVTFA  272 (293)
T ss_pred             HHHhcCchhhhcCCchHHHHHHHhhH-HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence            44432221012123346777778888 67899999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhcccc
Q 021377          269 IIVAGFYAVMWGKS  282 (313)
Q Consensus       269 lii~g~~l~~~~~~  282 (313)
                      +|-+|+.++....-
T Consensus       273 ~IW~aL~l~~~d~l  286 (293)
T COG2962         273 FIWLALALFSIDGL  286 (293)
T ss_pred             HHHHHHHHHHHHHH
Confidence            99999999876543

>KOG1441 consensus Glucose-6-phosphate/phosphate and phosphoenolpyruvate/phosphate antiporter [Carbohydrate transport and metabolism; Amino acid transport and metabolism]

Probab=99.67  E-value=3e-16  Score=140.92  Aligned_cols=229  Identities=16%  Similarity=0.197  Sum_probs=186.0

Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHhccccChhhHhHhhhhhHHHHHHHHHHHhhhcccccccccCcchhhHHhhhhhhhh
Q 021377           29 TFSILCSFFLLSVFGCSSQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFV  108 (313)
Q Consensus        29 ~~~~~~~~~~~g~~~~~~~~~~~~al~~~~~~~a~ii~~~~P~~~~l~a~~~~~E~~~~~~~~~~~~~~g~~l~~~Gv~l  108 (313)
                      ++..+..++.+|++.+++..+...++.+.+++..+++..++|++++++++++.+|+.++.      .+..++....|+.+
T Consensus        79 ~~~~~~~llpl~~~~~~~~v~~n~Sl~~v~VsF~q~iKa~~P~~tvl~~~~~~~~~~s~~------~~lsL~piv~GV~i  152 (316)
T KOG1441|consen   79 SKLPLRTLLPLGLVFCISHVLGNVSLSYVPVSFYQTIKALMPPFTVLLSVLLLGKTYSSM------TYLSLLPIVFGVAI  152 (316)
T ss_pred             cccchHHHHHHHHHHHHHHHhcchhhhccchhHHHHHHhhcchhHHHHHHHHhCCCCcce------EEEEEEEeeeeEEE
Confidence            445688888999999999999999999999999999999999999999999999999999      99999999999998


Q ss_pred             heeecCCCCcCCCCCCCCCCccCCCCCccchhHHHHHHHHHHHHHHHHHHHHHHhh----hchhHHHHHHHHHHHHHHHH
Q 021377          109 VTFYKGPPLIGELSHSGSPRRLLLSPQLSWILGGFFLAAEAFMNSAWFILQALILR----KFAAVLIIMFYLFFFNTILS  184 (313)
Q Consensus       109 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~s~~~~a~~~v~~k~~~~----~~~~~~~~~~~~~~~~~~~~  184 (313)
                      -+.                     .+..-...|...++++.+..+..+++.|+..+    +. |++....|+.-++.+.+
T Consensus       153 as~---------------------~e~~fn~~G~i~a~~s~~~~al~~I~~~~ll~~~~~~~-~~~~ll~y~ap~s~~~L  210 (316)
T KOG1441|consen  153 ASV---------------------TELSFNLFGFISAMISNLAFALRNILSKKLLTSKGESL-NSMNLLYYTAPISLIFL  210 (316)
T ss_pred             eee---------------------ccccccHHHHHHHHHHHHHHHHHHHHHHHhhhcccccc-CchHHHHHhhhHHHHHH
Confidence            753                     11223457999999999999999999999874    24 68999999999999988


Q ss_pred             H-HHHHHhccCCC-cccc-cchhHHHHHHHHHHHHHHHHHHHHHHHhccCCceeeeechhhHHHHHHHHHHHHhcCccch
Q 021377          185 T-AFALIVVSEPS-DWKL-GLDIGLVAVLYSAVIGTGFRVGLCTWCLSRTGPLYVSMFKPLAIVFSIVMDVVIVGDAFCL  261 (313)
Q Consensus       185 ~-~~~~~~~~~~~-~~~~-~~~~~~~~ll~~g~~~s~~~~~l~~~a~~~~~a~~~s~~~~~~pv~a~i~~~l~~ge~~~~  261 (313)
                      + |+....+++.. .+.. .+.......++.. ++...-....+..+.+++|.+.+..+.+.-++.++.+++++++++++
T Consensus       211 l~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~s-v~~f~~Nls~f~~ig~tSalT~~V~g~~K~~~vi~~s~~iF~~pvt~  289 (316)
T KOG1441|consen  211 LIPFLDYVEGNKFVGFLTAPWFVTFLILLLNS-VLAFLLNLSAFLVIGRTSALTYSVAGHMKRIVVIVVSWLIFGNPVTF  289 (316)
T ss_pred             hcchHhhhcccceeeeeccccchhhHHHHHHH-HHHHHHHHHHHHHHcccCchhhhhhccceEEEEEEeEeeeecCCCch
Confidence            8 87765554322 0000 1111222222222 23444445556889999999999999999999999999999999999


Q ss_pred             hhHHHHHHHHHHHHHHhcccccccc
Q 021377          262 GSLIGAMIIVAGFYAVMWGKSKEEK  286 (313)
Q Consensus       262 ~~~~G~~lii~g~~l~~~~~~~~~~  286 (313)
                      .+..|.++.++|++++.+.|.++++
T Consensus       290 ~n~~G~~iai~Gv~~Y~~~k~~~~~  314 (316)
T KOG1441|consen  290 LNALGYAIAILGVFLYSRAKLKEKK  314 (316)
T ss_pred             hhHHHHHHHHHHHHHHHHHhhhhhc
Confidence            9999999999999999988877654

>KOG1580 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]

Probab=99.65  E-value=6.4e-15  Score=123.82  Aligned_cols=227  Identities=15%  Similarity=0.159  Sum_probs=186.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhccccChhhHhHhhhhhHHHHHHHHHHHhhhcccccccccCcchhhHHhhhhhhhhheee
Q 021377           33 LCSFFLLSVFGCSSQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVTFY  112 (313)
Q Consensus        33 ~~~~~~~g~~~~~~~~~~~~al~~~~~~~a~ii~~~~P~~~~l~a~~~~~E~~~~~~~~~~~~~~g~~l~~~Gv~ll~~~  112 (313)
                      -+.+..++.-..+++.....|+||.|=-...+-.+.-|+-+++++.++.+++.+|+      +...++..+.|+++.. +
T Consensus        85 ~~~YaAcs~sYLlAMVssN~Alq~vpYPTqVlgKScKPIPVMilGVl~~~KsY~w~------kY~cVL~IV~GValFm-Y  157 (337)
T KOG1580|consen   85 TKMYAACSASYLLAMVSSNQALQYVPYPTQVLGKSCKPIPVMILGVLFAHKSYHWR------KYCCVLMIVVGVALFM-Y  157 (337)
T ss_pred             chHHHHHHHHHHHHHHhccchhcccCCcHHHhcccCCCcceeeeehhhhcccccHH------HHHHHHHHHHHHHHhh-c
Confidence            44455555555889999999999999888888899999999999999999999999      9999999999999984 5


Q ss_pred             cCCCCcCCCCCCCCCCccCCCCCccchhHHHHHHHHHHHHHHHHHHHHHHhhhc-hhHHHHHHHHHHHHHHHHHHHHHHh
Q 021377          113 KGPPLIGELSHSGSPRRLLLSPQLSWILGGFFLAAEAFMNSAWFILQALILRKF-AAVLIIMFYLFFFNTILSTAFALIV  191 (313)
Q Consensus       113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~s~~~~a~~~v~~k~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~  191 (313)
                      +++...+             ..+.....|.++.+++...-++....+.|...++ ++...++++..+.+.+.+..-.++.
T Consensus       158 K~~Kv~g-------------~e~~t~g~GElLL~lSL~mDGlTg~~Qdrira~yq~~g~~MM~~~NlwStL~Lg~g~lfT  224 (337)
T KOG1580|consen  158 KENKVGG-------------AEDKTFGFGELLLILSLAMDGLTGSIQDRIRASYQRTGTSMMFYTNLWSTLYLGAGLLFT  224 (337)
T ss_pred             cccccCC-------------CcccccchHHHHHHHHHHhcccchhHHHHHHHhhccCchhhHHHHHHHHHHHhhhhheeh
Confidence            6553332             2345567899999999999999999999887664 2567899999999988777665554


Q ss_pred             ccCCC--cccccchhHHHHHHHHHHHHHHHHHHHHHHHhccCCceeeeechhhHHHHHHHHHHHHhcCccchhhHHHHHH
Q 021377          192 VSEPS--DWKLGLDIGLVAVLYSAVIGTGFRVGLCTWCLSRTGPLYVSMFKPLAIVFSIVMDVVIVGDAFCLGSLIGAMI  269 (313)
Q Consensus       192 ~~~~~--~~~~~~~~~~~~ll~~g~~~s~~~~~l~~~a~~~~~a~~~s~~~~~~pv~a~i~~~l~~ge~~~~~~~~G~~l  269 (313)
                      ++-++  .+...-+..|+-+..+++ ++.+++.+.+.-+...+|...|++....-.++++.++++++.+++.+||+|..+
T Consensus       225 GElweF~yF~~RhP~~~~~l~l~ai-~s~LGQ~fIF~tv~~FgPLtCSivTTTRKfFTil~SVllf~npls~rQwlgtvl  303 (337)
T KOG1580|consen  225 GELWEFFYFVQRHPYVFWDLTLLAI-ASCLGQWFIFKTVEEFGPLTCSIVTTTRKFFTILISVLLFNNPLSGRQWLGTVL  303 (337)
T ss_pred             hhHHHHHHHHHhccHHHHHHHHHHH-HHHhhhHHHHHHHHHhCCeeEEEEeehHHHHHHHHHHHHhcCcCcHHHHHHHHH
Confidence            43222  222222335666777777 888999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcc
Q 021377          270 IVAGFYAVMWG  280 (313)
Q Consensus       270 ii~g~~l~~~~  280 (313)
                      ++.++..-...
T Consensus       304 VF~aL~~D~~~  314 (337)
T KOG1580|consen  304 VFSALTADVVD  314 (337)
T ss_pred             HHHHhhhHhhc
Confidence            99998876543

>COG2510 Predicted membrane protein [Function unknown]

Probab=99.62  E-value=9e-15  Score=111.66  Aligned_cols=134  Identities=14%  Similarity=0.110  Sum_probs=117.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHhccCCCcccccchhHHHHHHHHHHHHHHHHH
Q 021377          142 GFFLAAEAFMNSAWFILQALILRKFAAVLIIMFYLFFFNTILSTAFALIVVSEPSDWKLGLDIGLVAVLYSAVIGTGFRV  221 (313)
Q Consensus       142 ~~~~l~s~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~g~~~s~~~~  221 (313)
                      .++++++++.+++..++.|-..++. ||..-++.+.++....+..+....+ ++.......+..|..+...|+ ++++++
T Consensus         5 ~~~ALLsA~fa~L~~iF~KIGl~~v-dp~~At~IRtiVi~~~l~~v~~~~g-~~~~~~~~~~k~~lflilSGl-a~glsw   81 (140)
T COG2510           5 IIYALLSALFAGLTPIFAKIGLEGV-DPDFATTIRTIVILIFLLIVLLVTG-NWQAGGEIGPKSWLFLILSGL-AGGLSW   81 (140)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcccc-CccHHHHHHHHHHHHHHHHHHHhcC-ceecccccCcceehhhhHHHH-HHHHHH
Confidence            5899999999999999999998888 7999999999998888887776554 332222224568999999996 899999


Q ss_pred             HHHHHHhccCCceeeeechhhHHHHHHHHHHHHhcCccchhhHHHHHHHHHHHHHHh
Q 021377          222 GLCTWCLSRTGPLYVSMFKPLAIVFSIVMDVVIVGDAFCLGSLIGAMIIVAGFYAVM  278 (313)
Q Consensus       222 ~l~~~a~~~~~a~~~s~~~~~~pv~a~i~~~l~~ge~~~~~~~~G~~lii~g~~l~~  278 (313)
                      .+|++|++...++++.++.-+.|+++++++++++||+++..+++|.++|++|..+..
T Consensus        82 l~Yf~ALk~G~as~VvPldk~svvl~~lls~lfL~E~ls~~~~iG~~LI~~Gailvs  138 (140)
T COG2510          82 LLYFRALKKGKASRVVPLDKTSVVLAVLLSILFLGERLSLPTWIGIVLIVIGAILVS  138 (140)
T ss_pred             HHHHHHHhcCCcceEEEcccccHHHHHHHHHHHhcCCCCHHHHHHHHHHHhCeeeEe
Confidence            999999999999999999999999999999999999999999999999999987754

>KOG2766 consensus Predicted membrane protein [Function unknown]

Probab=99.58  E-value=1.4e-15  Score=129.20  Aligned_cols=222  Identities=15%  Similarity=0.138  Sum_probs=174.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhccccChhhHhHhhhhhHHHHHHHHHHHhhhcccccccccCcchhhHHhhhhhhhhhe
Q 021377           31 SILCSFFLLSVFGCSSQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVT  110 (313)
Q Consensus        31 ~~~~~~~~~g~~~~~~~~~~~~al~~~~~~~a~ii~~~~P~~~~l~a~~~~~E~~~~~~~~~~~~~~g~~l~~~Gv~ll~  110 (313)
                      ..|.++++++++..=++++...|.||++-..++.+---.-..+.+++|+++|-|.++.      ++.|+.+++.|+.++.
T Consensus        76 ~~~~hYilla~~DVEaNy~vV~AyQyTsmtSi~lLDcwaip~v~~lsw~fLktrYrlm------ki~gV~iCi~GvvmvV  149 (336)
T KOG2766|consen   76 AKWRHYILLAFVDVEANYFVVKAYQYTSMTSIMLLDCWAIPCVLVLSWFFLKTRYRLM------KISGVVICIVGVVMVV  149 (336)
T ss_pred             HHHHHhhheeEEeecccEEEeeehhhcchHHHHHHHHhhhHHHHHHHHHHHHHHHhhh------eeeeEEeEecceEEEE
Confidence            4466678888887888889999999999999999987766777889999999999999      9999999999999986


Q ss_pred             eecCCCCcCCCCCCCCCCccCCCCCccchhHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHHHHH
Q 021377          111 FYKGPPLIGELSHSGSPRRLLLSPQLSWILGGFFLAAEAFMNSAWFILQALILRKFAAVLIIMFYLFFFNTILSTAFALI  190 (313)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~s~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  190 (313)
                      + ++-.-            .+.+++.+-.+|+.+.++++.+||..++....+.++. |-...+....++|+++..+-...
T Consensus       150 ~-sDV~a------------gd~aggsnp~~GD~lvi~GATlYaVSNv~EEflvkn~-d~~elm~~lgLfGaIIsaIQ~i~  215 (336)
T KOG2766|consen  150 F-SDVHA------------GDRAGGSNPVKGDFLVIAGATLYAVSNVSEEFLVKNA-DRVELMGFLGLFGAIISAIQFIF  215 (336)
T ss_pred             E-eeecc------------ccccCCCCCccCcEEEEecceeeeeccccHHHHHhcC-cHHHHHHHHHHHHHHHHHHHHhh
Confidence            4 22211            1112345567899999999999999999999998888 58888889999999998888433


Q ss_pred             hccCCCcccccchhHHHHHHHHHHHHHHHHHHHHHHHhccCCceeeeechhhHHHHHHHHHHHHhcCccchhhHHHHHHH
Q 021377          191 VVSEPSDWKLGLDIGLVAVLYSAVIGTGFRVGLCTWCLSRTGPLYVSMFKPLAIVFSIVMDVVIVGDAFCLGSLIGAMII  270 (313)
Q Consensus       191 ~~~~~~~~~~~~~~~~~~ll~~g~~~s~~~~~l~~~a~~~~~a~~~s~~~~~~pv~a~i~~~l~~ge~~~~~~~~G~~li  270 (313)
                      ..++..  ...++......+. ..++..+-|.+.-..++..+++..++-....-.+++++  -.||-..+|...+..+.+
T Consensus       216 ~~~~~~--tl~w~~~i~~yl~-f~L~MFllYsl~pil~k~~~aT~~nlslLTsDmwsl~i--~~FgYhv~wLY~laF~~i  290 (336)
T KOG2766|consen  216 ERHHVS--TLHWDSAIFLYLR-FALTMFLLYSLAPILIKTNSATMFNLSLLTSDMWSLLI--RTFGYHVDWLYFLAFATI  290 (336)
T ss_pred             hcccee--eEeehHHHHHHHH-HHHHHHHHHHhhHHheecCCceEEEhhHhHHHHHHHHH--HHHhcchhhhhHHHHHHH
Confidence            222222  2222222222222 33456666777777899999999999999999999888  678888999999999999


Q ss_pred             HHHHHHH
Q 021377          271 VAGFYAV  277 (313)
Q Consensus       271 i~g~~l~  277 (313)
                      ..|.+++
T Consensus       291 ~~GliiY  297 (336)
T KOG2766|consen  291 ATGLIIY  297 (336)
T ss_pred             HHhhEEe
Confidence            9998887

>PF00892 EamA: EamA-like transporter family; InterPro: IPR000620 This domain is found in proteins including the Erwinia chrysanthemi PecM protein, which is involved in pectinase, cellulase and blue pigment regulation; and the Salmonella typhimurium PagO protein, the function of which is unknown

Probab=99.52  E-value=5.9e-14  Score=110.05  Aligned_cols=125  Identities=22%  Similarity=0.367  Sum_probs=107.5

Q ss_pred             HHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHhccCCCcccccchhHHHHHHHHHHHHHHHHHHHHHHHhc
Q 021377          150 FMNSAWFILQALILRKFAAVLIIMFYLFFFNTILSTAFALIVVSEPSDWKLGLDIGLVAVLYSAVIGTGFRVGLCTWCLS  229 (313)
Q Consensus       150 ~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~g~~~s~~~~~l~~~a~~  229 (313)
                      ++|+.+.+..|+..++. |+....++++..+++ ..+...+.....  ....+...+...++.+++++.+++.+++++++
T Consensus         1 ~~~a~~~~~~k~~~~~~-~~~~~~~~~~~~~~~-~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~   76 (126)
T PF00892_consen    1 FSWAIYSVFSKKLLKKI-SPLSITFWRFLIAGI-LLILLLILGRKP--FKNLSPRQWLWLLFLGLLGTALAYLLYFYALK   76 (126)
T ss_pred             ceeeeHHHHHHHHhccC-CHHHHHHHHHHHHHH-HHHHHHhhcccc--ccCCChhhhhhhhHhhccceehHHHHHHHHHH
Confidence            47899999999999998 599999999999998 666655444321  22223347778889999889999999999999


Q ss_pred             cCCceeeeechhhHHHHHHHHHHHHhcCccchhhHHHHHHHHHHHHHHh
Q 021377          230 RTGPLYVSMFKPLAIVFSIVMDVVIVGDAFCLGSLIGAMIIVAGFYAVM  278 (313)
Q Consensus       230 ~~~a~~~s~~~~~~pv~a~i~~~l~~ge~~~~~~~~G~~lii~g~~l~~  278 (313)
                      +.+++.++.+.+++|+++.++++++++|++++.+++|+++++.|+++..
T Consensus        77 ~~~~~~~~~~~~~~pv~~~i~~~~~~~e~~~~~~~~g~~l~~~g~~l~~  125 (126)
T PF00892_consen   77 YISASIVSILQYLSPVFAAILGWLFLGERPSWRQIIGIILIIIGVVLIS  125 (126)
T ss_pred             hcchhHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999998764

Many members of this family are classed as drug/metabolite transporters and have no known function. They are predicted to be integral membrane proteins and many of the proteins contain two copies of this domain [].; GO: 0016020 membrane

>KOG1443 consensus Predicted integral membrane protein [Function unknown]

Probab=99.52  E-value=6.9e-13  Score=115.77  Aligned_cols=225  Identities=20%  Similarity=0.230  Sum_probs=172.6

Q ss_pred             CCCCHHHH-HHHHHHHHHHHHHHHHHHHhccccChhhHhHhhhhhHHHHHHHHHHHhhhcccccccccCcchhhHHhhhh
Q 021377           26 PQLTFSIL-CSFFLLSVFGCSSQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIG  104 (313)
Q Consensus        26 ~~~~~~~~-~~~~~~g~~~~~~~~~~~~al~~~~~~~a~ii~~~~P~~~~l~a~~~~~E~~~~~~~~~~~~~~g~~l~~~  104 (313)
                      ..+++++. .+....|+..++.-.+..++++|++.+.-++..++.++|+.+++.++.-||++|.      -..-+++..+
T Consensus        76 ~~~sw~~~Lr~~aPtalata~DIGLSN~sl~yVtlSlYTM~KSSsi~FIllFs~if~lEk~~w~------L~l~v~lI~~  149 (349)
T KOG1443|consen   76 VVLSWRDYLRRLAPTALATALDIGLSNWSLEYVTLSLYTMTKSSSILFILLFSLIFKLEKFRWA------LVLIVLLIAV  149 (349)
T ss_pred             cCCcHHHHHHHhhhhhhhhhcccccccceeeeeeeeeeeeccccHHHHHHHHHHHHHhHHHHHH------HHHHHHHHhh
Confidence            34566664 4566778887999999999999999999999999999999999999999999999      7777888888


Q ss_pred             hhhhheeecCCCCcCCCCCCCCCCccCCCCCccchhHHHHHHHHHHHHHHHHHHHHHHhhhch----hHHHHHHHHHHHH
Q 021377          105 GAFVVTFYKGPPLIGELSHSGSPRRLLLSPQLSWILGGFFLAAEAFMNSAWFILQALILRKFA----AVLIIMFYLFFFN  180 (313)
Q Consensus       105 Gv~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~s~~~~a~~~v~~k~~~~~~~----~~~~~~~~~~~~~  180 (313)
                      |+.+.+. ++.                    +-...|..+...++++-++...+.+...++.|    +|...+....-..
T Consensus       150 Glflft~-KsT--------------------qf~i~Gf~lv~~aS~~sGlRW~~tQ~ll~~~~~~~~~P~~ti~~l~p~M  208 (349)
T KOG1443|consen  150 GLFLFTY-KST--------------------QFNIEGFFLVLAASLLSGLRWAFTQMLLRNQPSAKRNPIDTIFHLQPWM  208 (349)
T ss_pred             heeEEEe-ccc--------------------ceeehhHHHHHHHHHhhhhhHHHHHHHHhcCccccCCCeeeHHHhhhHH
Confidence            8888864 332                    33457888888888888887777777766543    6788888888888


Q ss_pred             HHHHHHHHHHhccCCC-----cccccch-hHHHHHHHHHHHHHHHHHHH---HHHHhccCCceeeeechhhHHHHHHHHH
Q 021377          181 TILSTAFALIVVSEPS-----DWKLGLD-IGLVAVLYSAVIGTGFRVGL---CTWCLSRTGPLYVSMFKPLAIVFSIVMD  251 (313)
Q Consensus       181 ~~~~~~~~~~~~~~~~-----~~~~~~~-~~~~~ll~~g~~~s~~~~~l---~~~a~~~~~a~~~s~~~~~~pv~a~i~~  251 (313)
                      .+.++|..+.+|+...     .+..... ..+..+.+++. +..+++.+   -+..+.+++....++.....-+-+.+++
T Consensus       209 ~~~Ll~~~l~fEG~~~~~~s~~f~~~d~~~~~rv~g~i~l-~g~laF~l~~sEflLl~~Ts~ltlSIaGI~Kel~tl~la  287 (349)
T KOG1443|consen  209 SIGLLPLSLLFEGLHLITSSSIFRFQDTGLILRVIGLISL-GGLLAFLLEFSEFLLLSRTSSLTLSIAGIVKEVCTLLLA  287 (349)
T ss_pred             HHHHHHHHHHHcccccchhhhHHHhcCccHHHHHHHHHHH-HHHHHHHHHHHHHheeeeccceeeeHHHHHHHHHHHHHH
Confidence            8888888888876332     1111111 11222222222 22233322   2356789999999999999999999999


Q ss_pred             HHHhcCccchhhHHHHHHHHHHHHHHh
Q 021377          252 VVIVGDAFCLGSLIGAMIIVAGFYAVM  278 (313)
Q Consensus       252 ~l~~ge~~~~~~~~G~~lii~g~~l~~  278 (313)
                      ..+.+|.++...+.|..+...|+....
T Consensus       288 ~ii~~d~ls~lN~~Gl~i~~agi~~~~  314 (349)
T KOG1443|consen  288 IIILKDQLSLLNWLGLAICLAGILLHR  314 (349)
T ss_pred             HHHhhcchhhhHHHHHHHHHHHHHHhc
Confidence            999999999999999999999998873

>PF04142 Nuc_sug_transp: Nucleotide-sugar transporter; InterPro: IPR007271 This family of membrane proteins transport nucleotide sugars from the cytoplasm into golgi vesicles

Probab=99.48  E-value=4.8e-12  Score=111.12  Aligned_cols=229  Identities=15%  Similarity=0.207  Sum_probs=168.6

Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHhccccChhhHhHhhhhhHHHHHHHHHHHhhhcccccccccCcchhhHHhhhhhhhh
Q 021377           29 TFSILCSFFLLSVFGCSSQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFV  108 (313)
Q Consensus        29 ~~~~~~~~~~~g~~~~~~~~~~~~al~~~~~~~a~ii~~~~P~~~~l~a~~~~~E~~~~~~~~~~~~~~g~~l~~~Gv~l  108 (313)
                      ++|+.+++.+-+++.+..+.+.|.++++++++.-.++.++-.++|++++.+++|+|++++      +|.++.+.+.|+.+
T Consensus        13 ~~~~~~~~~vPA~lY~~qn~L~~~al~~ld~~t~qvl~q~kIl~TAl~s~~~L~r~ls~~------qW~aL~lL~~Gv~l   86 (244)
T PF04142_consen   13 SPKDTLKLAVPALLYAIQNNLQFVALSYLDPSTFQVLSQSKILFTALFSVLLLKRRLSRR------QWLALFLLVAGVVL   86 (244)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhhHHHHHHHHHHHHHHcccchh------hHHHHHHHHHHHhe
Confidence            467888888889999999999999999999999999999999999999999999999999      99999999999999


Q ss_pred             heeecCCCCcCCCCCCCCCCcc-CCCCCccchhHHHHHHHHHHHHHHHHHHHHHHhhhch-hHHHHHHHHHHHHHHHHHH
Q 021377          109 VTFYKGPPLIGELSHSGSPRRL-LLSPQLSWILGGFFLAAEAFMNSAWFILQALILRKFA-AVLIIMFYLFFFNTILSTA  186 (313)
Q Consensus       109 l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~G~~~~l~s~~~~a~~~v~~k~~~~~~~-~~~~~~~~~~~~~~~~~~~  186 (313)
                      +-. .+. ...   ++++.... .+....+...|.++.++++++-+...+...|..|+.+ +....+.....+|.++.++
T Consensus        87 v~~-~~~-~~~---~~~~~~~~~~~~~~~~~~~G~~~vl~~~~~S~~agVy~E~~lK~~~~s~~~~N~qL~~~gi~~~~~  161 (244)
T PF04142_consen   87 VQL-SSS-QSS---DNSSSSSVHHDASNQNPLLGLLAVLAAAFLSGFAGVYFEKLLKRSNVSLWIQNMQLYLFGILFNLL  161 (244)
T ss_pred             eec-CCc-ccc---ccccccccccccccchhHhHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHH
Confidence            853 111 110   00000111 1112345578999999999999999999999887752 3566666767777776666


Q ss_pred             HHHHhccC-CCcccccchhHHHHHHHHHHHHHHHHHHHHHHHhccCCceeeeechhhHHHHHHHHHHHHhcCccchhhHH
Q 021377          187 FALIVVSE-PSDWKLGLDIGLVAVLYSAVIGTGFRVGLCTWCLSRTGPLYVSMFKPLAIVFSIVMDVVIVGDAFCLGSLI  265 (313)
Q Consensus       187 ~~~~~~~~-~~~~~~~~~~~~~~ll~~g~~~s~~~~~l~~~a~~~~~a~~~s~~~~~~pv~a~i~~~l~~ge~~~~~~~~  265 (313)
                      .....+.+ ..+....  ..+-...+..++...++=.+....+|+.+...=+....+..+.+.+.+++++|.+++....+
T Consensus       162 ~~~~~~~~~~~~~g~f--~G~~~~~~~~i~~~a~gGllva~v~KyadnI~K~fa~a~siv~t~~~s~~lf~~~~s~~f~l  239 (244)
T PF04142_consen  162 ALLLSDGSAISESGFF--HGYSWWVWIVIFLQAIGGLLVAFVLKYADNIVKGFATAVSIVLTAVLSVLLFGFPPSLSFLL  239 (244)
T ss_pred             HHhcccccccccCCch--hhcchHHHHHHHHHHHhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHhh
Confidence            54433221 1111000  11222233333344444455667789999998899999999999999999999999999999


Q ss_pred             HHHHH
Q 021377          266 GAMII  270 (313)
Q Consensus       266 G~~li  270 (313)
                      |..++
T Consensus       240 g~~~V  244 (244)
T PF04142_consen  240 GAALV  244 (244)
T ss_pred             heecC
Confidence            98653

P78382 from SWISSPROT transports CMP-sialic acid, P78381 from SWISSPROT transports UDP-galactose and Q9Y2D2 from SWISSPROT transports UDP-GlcNAc. This family has some but not complete overlap with the UDP-galactose transporter family IPR004689 from INTERPRO.; GO: 0005351 sugar:hydrogen symporter activity, 0008643 carbohydrate transport, 0000139 Golgi membrane, 0016021 integral to membrane

>KOG2234 consensus Predicted UDP-galactose transporter [Carbohydrate transport and metabolism]

Probab=99.36  E-value=1.9e-10  Score=103.13  Aligned_cols=238  Identities=12%  Similarity=0.115  Sum_probs=169.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhccccChhhHhHhhhhhHHHHHHHHHHHhhhcccccccccCcchhhHHhhhhhhhhh
Q 021377           30 FSILCSFFLLSVFGCSSQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVV  109 (313)
Q Consensus        30 ~~~~~~~~~~g~~~~~~~~~~~~al~~~~~~~a~ii~~~~P~~~~l~a~~~~~E~~~~~~~~~~~~~~g~~l~~~Gv~ll  109 (313)
                      +++.++..+-+++.++.+.++|.++.+.+++..++...+--+-|+++..+++++|+++.      +|.++++.++|+.++
T Consensus        89 ~~~~lk~~vPa~iYalqNnl~yval~~ldaatyqVt~qlKI~tTA~f~vl~L~rkLs~~------Qw~Al~lL~~Gv~~v  162 (345)
T KOG2234|consen   89 PRETLKVSVPALIYALQNNLQYVALSNLDAATYQVTYQLKILTTAIFSVLILRRKLSRL------QWMALVLLFAGVALV  162 (345)
T ss_pred             hHHHHHHHHHHHHHHHhhhHHHHHHhcCCchhhhhhhhHHHHHHHHHHHHHHhhhhhHH------HHHHHHHHHHHHHHH
Confidence            45677777778888777789999999999999999999999999999999999999999      999999999999998


Q ss_pred             eeecCCCCcCCCCCCCCCCccCCCCCccchhHHHHHHHHHHHHHHHHHHHHHHhhhch-hHHHHHHHHHHHHHHHHHHHH
Q 021377          110 TFYKGPPLIGELSHSGSPRRLLLSPQLSWILGGFFLAAEAFMNSAWFILQALILRKFA-AVLIIMFYLFFFNTILSTAFA  188 (313)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~s~~~~a~~~v~~k~~~~~~~-~~~~~~~~~~~~~~~~~~~~~  188 (313)
                      -. ..+  .     +.++  .......+...|....+.+.+.-+...+...+.+++-. +.+..+.-..++|.++.+...
T Consensus       163 Q~-~~~--~-----~~~a--~~~~~~~n~~~G~~avl~~c~~SgfAgvYfEkiLK~s~~s~wi~NiqL~~~g~~f~~l~~  232 (345)
T KOG2234|consen  163 QL-PSL--S-----PTGA--KSESSAQNPFLGLVAVLVACFLSGFAGVYFEKILKGSNVSLWIRNIQLYFFGILFNLLTI  232 (345)
T ss_pred             hc-cCC--C-----CCCc--cCCCcccchhhhHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHH
Confidence            42 111  0     0000  01233456678999999999999999999988886532 345555555566666555554


Q ss_pred             HHhccCCCcccccchhHHHHHHHHHHHHHHHHHHHHHHHhccCCceeeeechhhHHHHHHHHHHHHhcCccchhhHHHHH
Q 021377          189 LIVVSEPSDWKLGLDIGLVAVLYSAVIGTGFRVGLCTWCLSRTGPLYVSMFKPLAIVFSIVMDVVIVGDAFCLGSLIGAM  268 (313)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~~~ll~~g~~~s~~~~~l~~~a~~~~~a~~~s~~~~~~pv~a~i~~~l~~ge~~~~~~~~G~~  268 (313)
                      +..+.+...|... -..|-...+.-++..+++=.+-...+++.+-..=+....+..+++.+.++.++|-++|....+|..
T Consensus       233 ~~~d~~~i~~~gf-f~G~s~~vw~vVl~~a~gGLlvs~v~KyADnIlK~f~~s~aiilt~v~S~~Lf~~~~t~~F~lG~~  311 (345)
T KOG2234|consen  233 LLQDGEAINEYGF-FYGYSSIVWLVVLLNAVGGLLVSLVMKYADNILKGFSTSVAIILTTVASIALFDFQLTLYFLLGAL  311 (345)
T ss_pred             hhccccccccCCc-cccccHHHHHHHHHHhccchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHccCCchHHHHHHHH
Confidence            4333211111100 012222233333334444444455567777777677777889999999999999999999999999


Q ss_pred             HHHHHHHHHhcccccc
Q 021377          269 IIVAGFYAVMWGKSKE  284 (313)
Q Consensus       269 lii~g~~l~~~~~~~~  284 (313)
                      +++..+.++...+.++
T Consensus       312 lVi~Si~lY~~~P~~~  327 (345)
T KOG2234|consen  312 LVILSIFLYSLYPARD  327 (345)
T ss_pred             HHHHHHHHhhcCCccc
Confidence            9999999998554443

>KOG1581 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]

Probab=99.34  E-value=5.1e-11  Score=104.22  Aligned_cols=235  Identities=14%  Similarity=0.175  Sum_probs=185.3

Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHhccccChhhHhHhhhhhHHHHHHHHHHHhhhcccccccccCcchhhHHhhhhhhhh
Q 021377           29 TFSILCSFFLLSVFGCSSQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFV  108 (313)
Q Consensus        29 ~~~~~~~~~~~g~~~~~~~~~~~~al~~~~~~~a~ii~~~~P~~~~l~a~~~~~E~~~~~~~~~~~~~~g~~l~~~Gv~l  108 (313)
                      .++.|+++...++.+.+...+.|-|+.|++=-.-++-...--+-+++...++.|.|++..      +.....+.-.|+.+
T Consensus        79 ~~apl~~y~~is~tn~~s~~~~yeaLKyvSyPtq~LaKscKmIPVmlmg~Lvy~~ky~~~------eYl~~~LIs~Gvsi  152 (327)
T KOG1581|consen   79 GVAPLYKYSLISFTNTLSSWCGYEALKYVSYPTQTLAKSCKMIPVMLMGTLVYGRKYSSF------EYLVAFLISLGVSI  152 (327)
T ss_pred             CCCchhHHhHHHHHhhcchHHHHHHHHhccchHHHHHHHhhhhHHHHHHHHHhcCccCcH------HHHHHHHHHhheee
Confidence            345578888888888999999999999999877777777666777789999999999999      99999999999998


Q ss_pred             heeecCCCCcCCCCCCCCCCccCCCCCccchhHHHHHHHHHHHHHHHHHHHHHHhhhch-hHHHHHHHHHHHHHHHHHHH
Q 021377          109 VTFYKGPPLIGELSHSGSPRRLLLSPQLSWILGGFFLAAEAFMNSAWFILQALILRKFA-AVLIIMFYLFFFNTILSTAF  187 (313)
Q Consensus       109 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~s~~~~a~~~v~~k~~~~~~~-~~~~~~~~~~~~~~~~~~~~  187 (313)
                      ..+++..+            +.++....+...|..++....+.-+..+..++++.++.+ ++..++++..+++++....-
T Consensus       153 F~l~~~s~------------s~~~~g~~ns~~G~~Ll~~~L~fDgfTn~tQd~lf~~~k~s~~~mM~~vNLf~~i~~~~~  220 (327)
T KOG1581|consen  153 FSLFPNSD------------SSSKSGRENSPIGILLLFGYLLFDGFTNATQDSLFKKYKVSSLHMMFGVNLFSAILNGTY  220 (327)
T ss_pred             EEEecCCC------------CccccCCCCchHhHHHHHHHHHHHhhHHhHHHHHhccCCccHhHHHHHHHHHHHHHHHHh
Confidence            86532221            111223345678999999999999999999999887643 67899999999998877665


Q ss_pred             HHHhccC-CC--cccccchhHHHHHHHHHHHHHHHHHHHHHHHhccCCceeeeechhhHHHHHHHHHHHHhcCccchhhH
Q 021377          188 ALIVVSE-PS--DWKLGLDIGLVAVLYSAVIGTGFRVGLCTWCLSRTGPLYVSMFKPLAIVFSIVMDVVIVGDAFCLGSL  264 (313)
Q Consensus       188 ~~~~~~~-~~--~~~~~~~~~~~~ll~~g~~~s~~~~~l~~~a~~~~~a~~~s~~~~~~pv~a~i~~~l~~ge~~~~~~~  264 (313)
                      .. ..+. ..  ++-..-+..+.-++.... +..+++.+.++-+++.|+.+.+.++...-.+++.++.+.+|.+++..||
T Consensus       221 li-~qg~~~~av~F~~~hp~~~~Di~l~s~-~gavGQ~FI~~TI~~FGslt~t~I~ttRk~~si~lS~i~f~h~~s~~q~  298 (327)
T KOG1581|consen  221 LI-LQGHLLPAVSFIKEHPDVAFDILLYST-CGAVGQLFIFYTIERFGSLTFTTIMTTRKMVSIMLSCIVFGHPLSSEQW  298 (327)
T ss_pred             hh-cCCCCchHHHHHHcChhHHHHHHHHHH-hhhhhhheehhhHhhcccHHHHHHHHHHHHHHHHHHHHHhCCccchhhc
Confidence            33 3221 11  111111224555555555 6679999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhccccc
Q 021377          265 IGAMIIVAGFYAVMWGKSK  283 (313)
Q Consensus       265 ~G~~lii~g~~l~~~~~~~  283 (313)
                      +|..+++.|+.+-...|++
T Consensus       299 ~g~~iVFg~i~l~~~~k~~  317 (327)
T KOG1581|consen  299 LGVLIVFGGIFLEILLKKK  317 (327)
T ss_pred             cCeeeehHHHHHHHHHHHh
Confidence            9999999999887665555

>KOG1444 consensus Nucleotide-sugar transporter VRG4/SQV-7 [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.31  E-value=1.2e-10  Score=103.09  Aligned_cols=233  Identities=15%  Similarity=0.169  Sum_probs=187.2

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHHHHhccccChhhHhHhhhhhHHHHHHHHHHHhhhcccccccccCcchhhHHhhhh
Q 021377           25 RPQLTFSILCSFFLLSVFGCSSQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIG  104 (313)
Q Consensus        25 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~al~~~~~~~a~ii~~~~P~~~~l~a~~~~~E~~~~~~~~~~~~~~g~~l~~~  104 (313)
                      .++++++..++.+...++..+..+.--.+++|.+....+++-...|+++++....++|.+++++      .+.++...++
T Consensus        69 ~~~l~~~~~kk~~P~~~lf~~~i~t~~~slk~lnVpm~tv~kn~tii~~ai~E~lf~~~~~~~~------v~~Sv~~m~~  142 (314)
T KOG1444|consen   69 FRPLDLRTAKKWFPVSLLFVGMLFTGSKSLKYLNVPMFTVFKNLTIILTAIGEVLFFGKRPSNK------VWASVFAMII  142 (314)
T ss_pred             cCCcChHHHHHHccHHHHHHHHHHHccccccccCchHHHHHhhchHHHHHHhHHhhcCcCchhh------HHHHHHHHHH
Confidence            3667888888888888888888888899999999999999999999999999999999999988      8888888888


Q ss_pred             hhhhheeecCCCCcCCCCCCCCCCccCCCCCccchhHHHHHHHHHHHHHHHHHHHHHHhhhch-hHHHHHHHHHHHHHHH
Q 021377          105 GAFVVTFYKGPPLIGELSHSGSPRRLLLSPQLSWILGGFFLAAEAFMNSAWFILQALILRKFA-AVLIIMFYLFFFNTIL  183 (313)
Q Consensus       105 Gv~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~s~~~~a~~~v~~k~~~~~~~-~~~~~~~~~~~~~~~~  183 (313)
                      |......                     .+..-...|+.+++...++-+.+.+..|+..+... +.+.+++|-.+.+...
T Consensus       143 ~s~~~~~---------------------~d~sf~~~gY~w~~~n~~~~a~~~v~~kk~vd~~~l~~~~lv~yNnl~~L~~  201 (314)
T KOG1444|consen  143 GSVAAAF---------------------TDLSFNLRGYSWALANCLTTAAFVVYVKKSVDSANLNKFGLVFYNNLLSLPP  201 (314)
T ss_pred             HHHhhcc---------------------ccceecchhHHHHHHHHHHHHHHHHHHHHhhccccccceeEEeehhHHHHHH
Confidence            8777642                     11112234899999999999999999998654321 3567888999998888


Q ss_pred             HHHHHHHhcc-C-----CCcccccchhHHHHHHHHHHHHHHHHHHHHHHHhccCCceeeeechhhHHHHHHHHHHHHhcC
Q 021377          184 STAFALIVVS-E-----PSDWKLGLDIGLVAVLYSAVIGTGFRVGLCTWCLSRTGPLYVSMFKPLAIVFSIVMDVVIVGD  257 (313)
Q Consensus       184 ~~~~~~~~~~-~-----~~~~~~~~~~~~~~ll~~g~~~s~~~~~l~~~a~~~~~a~~~s~~~~~~pv~a~i~~~l~~ge  257 (313)
                      +.....++++ +     ...+.  ....+..++..++++-++.|..+ ++.+..+++..+.+....-..+.+...++.|+
T Consensus       202 l~~~~~~~ge~~~l~~~~~~~~--~~~~~~~~~lScv~gf~isy~s~-~ct~~~SAtT~tivG~~n~l~t~l~~ll~~d~  278 (314)
T KOG1444|consen  202 LLILSFITGELDALSLNFDNWS--DSSVLVVMLLSCVMGFGISYTSF-LCTRVNSATTTTIVGAKNKLLTYLGGLLFGDK  278 (314)
T ss_pred             HHHHHHHhcchHHHHhhccccc--chhHHHHHHHHHHHHHHHHHHHH-HHHhhccccceeehhhhhhHHHHHHHHhcCCc
Confidence            8887766553 1     11121  22357788888887777776655 88899999999999988888889999999999


Q ss_pred             ccchhhHHHHHHHHHHHHHHhccccccccc
Q 021377          258 AFCLGSLIGAMIIVAGFYAVMWGKSKEEKT  287 (313)
Q Consensus       258 ~~~~~~~~G~~lii~g~~l~~~~~~~~~~~  287 (313)
                      +.++..++|..+-++|-.++.+.+.++++.
T Consensus       279 ~~~~~n~~gll~~~~ggv~Y~~~~~~~k~~  308 (314)
T KOG1444|consen  279 PFTFLNVIGLLVGFFGGVLYSYATFRKKKQ  308 (314)
T ss_pred             eechhhhHHHHHHhhhhhHHhhhhhhhccC
Confidence            999999999999999999998877665543

>PRK15430 putative chloramphenical resistance permease RarD; Provisional

Probab=99.18  E-value=3.7e-10  Score=102.41  Aligned_cols=138  Identities=14%  Similarity=0.117  Sum_probs=110.6

Q ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHhccCCCccc--ccchhHHHHHHHHHH
Q 021377          137 SWILGGFFLAAEAFMNSAWFILQALILRKFAAVLIIMFYLFFFNTILSTAFALIVVSEPSDWK--LGLDIGLVAVLYSAV  214 (313)
Q Consensus       137 ~~~~G~~~~l~s~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~ll~~g~  214 (313)
                      +...|.++++++++.|+...+..|.. .+. +|..+.++++.++.+++.+...... +.....  ......+ .....+.
T Consensus         5 ~~~~g~~~~l~a~~~wg~~~~~~k~~-~~~-~~~~~~~~R~~~a~~~l~~~~~~~~-~~~~~~~~~~~~~~~-~~~~~~~   80 (296)
T PRK15430          5 QTRQGVLLALAAYFIWGIAPAYFKLI-YYV-PADEILTHRVIWSFFFMVVLMSICR-QWSYLKTLIQTPQKI-FMLAVSA   80 (296)
T ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHh-cCC-CHHHHHHHHHHHHHHHHHHHHHHHc-cHHHHHHHHcCHHHH-HHHHHHH
Confidence            44579999999999999999999865 567 5999999999999887776654332 111110  0011122 2334566


Q ss_pred             HHHHHHHHHHHHHhccCCceeeeechhhHHHHHHHHHHHHhcCccchhhHHHHHHHHHHHHHHh
Q 021377          215 IGTGFRVGLCTWCLSRTGPLYVSMFKPLAIVFSIVMDVVIVGDAFCLGSLIGAMIIVAGFYAVM  278 (313)
Q Consensus       215 ~~s~~~~~l~~~a~~~~~a~~~s~~~~~~pv~a~i~~~l~~ge~~~~~~~~G~~lii~g~~l~~  278 (313)
                      ++.++.+.++++++++.+++.++.+.+..|++++++++++++|+++..+++|.++.++|+.+..
T Consensus        81 ~~~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~v~l~~~~~l~E~~~~~~~~g~~l~~~Gv~li~  144 (296)
T PRK15430         81 VLIGGNWLLFIWAVNNHHMLEASLGYFINPLVNIVLGMIFLGERFRRMQWLAVILAICGVLVQL  144 (296)
T ss_pred             HHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHH
Confidence            6778899999999999999999999999999999999999999999999999999999998865

>PF06800 Sugar_transport: Sugar transport protein; InterPro: IPR010651 This is a family of bacterial sugar transporters approximately 300 residues long

Probab=99.15  E-value=5e-09  Score=92.10  Aligned_cols=226  Identities=15%  Similarity=0.085  Sum_probs=156.6

Q ss_pred             CCCC--HHHHHHHHHHHHHHHHHHHHHHHhccccChhhHhHhhh-hhHHHHHHHHHHHhhhcccccccccCcchhhHHhh
Q 021377           26 PQLT--FSILCSFFLLSVFGCSSQIFSFVGIQYSSPTLSTAMLN-LIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFAS  102 (313)
Q Consensus        26 ~~~~--~~~~~~~~~~g~~~~~~~~~~~~al~~~~~~~a~ii~~-~~P~~~~l~a~~~~~E~~~~~~~~~~~~~~g~~l~  102 (313)
                      |.++  .+.++..++.|++-...+...|.++++.+++.+..+.. ++-+.+.+++.++++|--+..++.-  -..++++.
T Consensus        36 p~~~~~~~~~~~~~lsG~~W~iGq~~qf~s~~~~GVS~tmPiStg~QLvg~sl~gv~~fgEW~~~~~~~~--G~~Al~li  113 (269)
T PF06800_consen   36 PAFSMSGTSFIVAFLSGAFWAIGQIGQFKSFKKIGVSKTMPISTGLQLVGTSLIGVLFFGEWTTTTQKII--GFLALVLI  113 (269)
T ss_pred             CCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcceeeeccchhHHHHHHHHHHHhhcCCCCCcchHHH--HHHHHHHH
Confidence            4444  37788888889988999999999999999999999975 6778899999999999887662110  13467778


Q ss_pred             hhhhhhheeecCCCCcCCCCCCCCCCccCCCCCccchhHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHH
Q 021377          103 IGGAFVVTFYKGPPLIGELSHSGSPRRLLLSPQLSWILGGFFLAAEAFMNSAWFILQALILRKFAAVLIIMFYLFFFNTI  182 (313)
Q Consensus       103 ~~Gv~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~s~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~  182 (313)
                      ++|+.+... +++..            ...++..+...|....+++.+.|..|.++.|..  +. |+....+=+.+...+
T Consensus       114 iiGv~lts~-~~~~~------------~~~~~~~~~~kgi~~Ll~stigy~~Y~~~~~~~--~~-~~~~~~lPqaiGm~i  177 (269)
T PF06800_consen  114 IIGVILTSY-QDKKS------------DKSSSKSNMKKGILALLISTIGYWIYSVIPKAF--HV-SGWSAFLPQAIGMLI  177 (269)
T ss_pred             HHHHHHhcc-ccccc------------cccccccchhhHHHHHHHHHHHHHHHHHHHHhc--CC-ChhHhHHHHHHHHHH
Confidence            888887753 22110            001123445679999999999999999997753  44 466666544333322


Q ss_pred             HHHHHHHHhccCCCcccccchhHHHHHHHHHHHHHHHHHHHHHHHhccCCceeeeechhhHHHHHHHHHHHHhcCccchh
Q 021377          183 LSTAFALIVVSEPSDWKLGLDIGLVAVLYSAVIGTGFRVGLCTWCLSRTGPLYVSMFKPLAIVFSIVMDVVIVGDAFCLG  262 (313)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~g~~~s~~~~~l~~~a~~~~~a~~~s~~~~~~pv~a~i~~~l~~ge~~~~~  262 (313)
                      ...++.....+  ..++   ...|.. +..|+ .=.++-.++..+.++.|....=.+.-+.++++.+.+.+++||+=+..
T Consensus       178 ~a~i~~~~~~~--~~~~---k~~~~n-il~G~-~w~ignl~~~is~~~~G~a~af~lSQ~~vvIStlgGI~il~E~Kt~k  250 (269)
T PF06800_consen  178 GAFIFNLFSKK--PFFE---KKSWKN-ILTGL-IWGIGNLFYLISAQKNGVATAFTLSQLGVVISTLGGIFILKEKKTKK  250 (269)
T ss_pred             HHHHHhhcccc--cccc---cchHHh-hHHHH-HHHHHHHHHHHhHHhccchhhhhHHhHHHHHHHhhhheEEEecCchh
Confidence            22222222211  1111   112222 33333 23467778889999999999999999999999999999999987765


Q ss_pred             ----hHHHHHHHHHHHHH
Q 021377          263 ----SLIGAMIIVAGFYA  276 (313)
Q Consensus       263 ----~~~G~~lii~g~~l  276 (313)
                          .++|.++++.|..+
T Consensus       251 e~~~~~~G~~Liv~G~il  268 (269)
T PF06800_consen  251 EMIYTLIGLILIVIGAIL  268 (269)
T ss_pred             hHHHHHHHHHHHHHhhhc
Confidence                44688888887654

Members include glucose uptake proteins [], ribose transport proteins, and several putative and hypothetical membrane proteins probably involved in sugar transport across bacterial membranes.; GO: 0015144 carbohydrate transmembrane transporter activity, 0034219 carbohydrate transmembrane transport, 0016021 integral to membrane

>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein

Probab=99.14  E-value=1.7e-09  Score=97.32  Aligned_cols=133  Identities=11%  Similarity=0.165  Sum_probs=102.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHhccCCCcccccchhHHHHHHHHHHHHHHHHH
Q 021377          142 GFFLAAEAFMNSAWFILQALILRKFAAVLIIMFYLFFFNTILSTAFALIVVSEPSDWKLGLDIGLVAVLYSAVIGTGFRV  221 (313)
Q Consensus       142 ~~~~l~s~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~g~~~s~~~~  221 (313)
                      .++.++++++|+.+.+..|+..++.+ +.  ..+.+..+++...++..... ....+..... .+...+..+.++....+
T Consensus         3 ~~~~~~aa~~~a~~~~~~k~~~~~~~-~~--~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~~-~~~~~~~~~~~~~~~~~   77 (281)
T TIGR03340         3 LTLVVFSALMHAGWNLMAKSHADKEP-DF--LWWALLAHSVLLTPYGLWYL-AQVGWSRLPA-TFWLLLAISAVANMVYF   77 (281)
T ss_pred             HHHHHHHHHHHHHHHHHHhhcCCchh-HH--HHHHHHHHHHHHHHHHHHhc-ccCCCCCcch-hhHHHHHHHHHHHHHHH
Confidence            46889999999999999998777653 43  35666666667766655321 1123332222 33334444555778999


Q ss_pred             HHHHHHhccCCceeeeechhhHHHHHHHHHHHHhcCccchhhHHHHHHHHHHHHHHhc
Q 021377          222 GLCTWCLSRTGPLYVSMFKPLAIVFSIVMDVVIVGDAFCLGSLIGAMIIVAGFYAVMW  279 (313)
Q Consensus       222 ~l~~~a~~~~~a~~~s~~~~~~pv~a~i~~~l~~ge~~~~~~~~G~~lii~g~~l~~~  279 (313)
                      .++++++++.+++.++++.+..|+++.+++++++||+++..+++|.++++.|+.+...
T Consensus        78 ~~~~~a~~~~~~~~~~~l~~~~p~~~~l~~~~~~~e~~~~~~~~g~~~~~~Gv~ll~~  135 (281)
T TIGR03340        78 LGLAQAYHHADVGLVYPLARSSPLLVAIWATLTLGETLSPLAWLGILIITLGLLVLGL  135 (281)
T ss_pred             HHHHHHHhcCChhhhhhHHhhhHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhc
Confidence            9999999999999999999999999999999999999999999999999999988764

This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.

>PF03151 TPT: Triose-phosphate Transporter family; InterPro: IPR004853 This family consists entirely of aligned regions from Drosophila melanogaster proteins

Probab=99.12  E-value=1.3e-09  Score=88.73  Aligned_cols=138  Identities=14%  Similarity=0.176  Sum_probs=111.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhh------chhHHHHHHHHHHHHHHHHHHHHHHhccCCC--ccc-cc------chhH
Q 021377          141 GGFFLAAEAFMNSAWFILQALILRK------FAAVLIIMFYLFFFNTILSTAFALIVVSEPS--DWK-LG------LDIG  205 (313)
Q Consensus       141 G~~~~l~s~~~~a~~~v~~k~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~-~~------~~~~  205 (313)
                      |.++++.+.++.+++.++.|+..++      ..++..+..+....+.+.+++...+.+....  ... ..      ....
T Consensus         1 G~~~~l~s~~~~al~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~s~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~   80 (153)
T PF03151_consen    1 GFILALASSLFSALRNVLIKKLLKKVSSNSKKLNPLNLLYYNSPISFIILLPLAFLLEGPQLSSFFSEIFGEELSSDPNF   80 (153)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHhhhhhhcchHHH
Confidence            6789999999999999999987665      2378999999999999999999887764321  010 00      1234


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhccCCceeeeechhhHHHHHHHHHHHHhcCccchhhHHHHHHHHHHHHHHhc
Q 021377          206 LVAVLYSAVIGTGFRVGLCTWCLSRTGPLYVSMFKPLAIVFSIVMDVVIVGDAFCLGSLIGAMIIVAGFYAVMW  279 (313)
Q Consensus       206 ~~~ll~~g~~~s~~~~~l~~~a~~~~~a~~~s~~~~~~pv~a~i~~~l~~ge~~~~~~~~G~~lii~g~~l~~~  279 (313)
                      +..++..|+ ....-....+..+++.+|...+....+..+..++.+++++||++++.+++|.++.+.|.+++.|
T Consensus        81 ~~~~~~~~~-~~~~~n~~~f~~i~~tS~lt~~v~~~~K~~~~i~~s~~~f~~~~t~~~~~G~~l~~~G~~~Ysy  153 (153)
T PF03151_consen   81 IFLLILSGL-LAFLYNLSSFLLIKLTSPLTYSVLGNVKRILVILLSVIFFGEPITPLQIIGIVLALVGVLLYSY  153 (153)
T ss_pred             HHHHHHHHH-HHHHHHHHHHHHhhhcChhHHHHHHHHHHHHHHHHHhhhcCCcCCHHHHHHHHHHHHHHheeeC
Confidence            555555555 3446666677889999999999999999999999999999999999999999999999988754

O49724 from SWISSPROT contains three repeats of this region. In other proteins, the aligned region is located towards the C terminus. The function of the aligned region is unknown.

>PRK02971 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF; Provisional

Probab=99.10  E-value=1.5e-09  Score=85.69  Aligned_cols=123  Identities=13%  Similarity=0.156  Sum_probs=94.5

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHhccCCCcccccchhHHHHHHHHHHHHHHH
Q 021377          140 LGGFFLAAEAFMNSAWFILQALILRKFAAVLIIMFYLFFFNTILSTAFALIVVSEPSDWKLGLDIGLVAVLYSAVIGTGF  219 (313)
Q Consensus       140 ~G~~~~l~s~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~g~~~s~~  219 (313)
                      .|.++.+.+.++-+..+++-|+-.++.+ ....... .    . ......         .     .....+++|+++.++
T Consensus         2 ~~~~~i~~sv~l~~~gQl~~K~g~~~~g-~~~~~~~-~----~-~~~~~~---------~-----~p~~~i~lgl~~~~l   60 (129)
T PRK02971          2 MGYLWGLASVLLASVAQLSLKWGMSRLP-LLSHAWD-F----I-AALLAF---------G-----LALRAVLLGLAGYAL   60 (129)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHhhCC-CccchhH-H----H-HHHHHH---------h-----ccHHHHHHHHHHHHH
Confidence            3788999999999999999999887764 2221111 0    0 000000         0     111247889999999


Q ss_pred             HHHHHHHHhccCCceeeeechhhHHHHHHHHHHH--HhcCccchhhHHHHHHHHHHHHHHhccccc
Q 021377          220 RVGLCTWCLSRTGPLYVSMFKPLAIVFSIVMDVV--IVGDAFCLGSLIGAMIIVAGFYAVMWGKSK  283 (313)
Q Consensus       220 ~~~l~~~a~~~~~a~~~s~~~~~~pv~a~i~~~l--~~ge~~~~~~~~G~~lii~g~~l~~~~~~~  283 (313)
                      ++.+|.+++++.+.+++.++....++...+.++.  ++||++++.+++|+++|++|+++..+.+++
T Consensus        61 a~~~w~~aL~~~~ls~Ayp~~sl~~~~v~~~~~~~~~~~E~ls~~~~iGi~lIi~GV~lv~~~~~~  126 (129)
T PRK02971         61 SMLCWLKALRYLPLSRAYPLLSLSYALVYLAAMLLPWFNETFSLKKTLGVACIMLGVWLINLPTTK  126 (129)
T ss_pred             HHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhccCCCC
Confidence            9999999999999999999999998888888875  899999999999999999999998765443

>TIGR00688 rarD rarD protein

Probab=99.09  E-value=1.5e-09  Score=96.22  Aligned_cols=136  Identities=13%  Similarity=0.144  Sum_probs=108.1

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHhccCC---Cccccc-chhHHHHHHHHHHH
Q 021377          140 LGGFFLAAEAFMNSAWFILQALILRKFAAVLIIMFYLFFFNTILSTAFALIVVSEP---SDWKLG-LDIGLVAVLYSAVI  215 (313)
Q Consensus       140 ~G~~~~l~s~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~-~~~~~~~ll~~g~~  215 (313)
                      +|.++.++++++|+...+..|. ..+. +|..+.+++++++++.+.+......+..   ..++.. ....+..+...|++
T Consensus         2 ~g~~~~i~a~~~wg~~~~~~k~-~~~~-~~~~i~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~   79 (256)
T TIGR00688         2 KGIIVSLLASFLFGYMYYYSKL-LKPL-PATDILGHRMIWSFPFMLLSVTLFRQWAALIERLKRIQKRPLILSLLLCGLL   79 (256)
T ss_pred             CcHHHHHHHHHHHHHHHHHHHH-hccC-CHHHHHHHHHHHHHHHHHHHHHHHcchHHHHHHHhCcccchHHHHHHHHHHH
Confidence            4889999999999999999997 4567 5999999999999888766554332110   011111 11123345556654


Q ss_pred             HHHHHHHHHHHHhccCCceeeeechhhHHHHHHHHHHHHhcCccchhhHHHHHHHHHHHHHHh
Q 021377          216 GTGFRVGLCTWCLSRTGPLYVSMFKPLAIVFSIVMDVVIVGDAFCLGSLIGAMIIVAGFYAVM  278 (313)
Q Consensus       216 ~s~~~~~l~~~a~~~~~a~~~s~~~~~~pv~a~i~~~l~~ge~~~~~~~~G~~lii~g~~l~~  278 (313)
                       ..+.+.++++++++.++..++.+.+..|++++++++++++|+++..+++|.++.++|+.+..
T Consensus        80 -~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~~~lla~~~l~Ek~~~~~~l~~~~~~~Gv~li~  141 (256)
T TIGR00688        80 -IGFNWWLFIWAVNNGSSLEVSLGYLINPLVMVALGRVFLKERISRFQFIAVIIATLGVISNI  141 (256)
T ss_pred             -HHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHH
Confidence             66889999999999999999999999999999999999999999999999999999988764

This uncharacterized protein is predicted to have many membrane-spanning domains.

>KOG1583 consensus UDP-N-acetylglucosamine transporter [Carbohydrate transport and metabolism]

Probab=99.02  E-value=1.4e-08  Score=87.82  Aligned_cols=243  Identities=14%  Similarity=0.152  Sum_probs=155.6

Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHHHhcccc-ChhhHhHhhhhhHHHHHHHHHHHhhhcccccccccCcchhhHHhhhh
Q 021377           26 PQLTFSILCSFFLLSVFGCSSQIFSFVGIQYS-SPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIG  104 (313)
Q Consensus        26 ~~~~~~~~~~~~~~g~~~~~~~~~~~~al~~~-~~~~a~ii~~~~P~~~~l~a~~~~~E~~~~~~~~~~~~~~g~~l~~~  104 (313)
                      ++.+.|++.....+-   ...+.+-.+++++- +...-.++-.-.++-++++++++.|+|.+.+      |+.++++..+
T Consensus        60 ~kiplk~Y~i~V~mF---F~vnv~NN~al~f~I~~PlHiIfRsgsll~nM~~g~il~~k~Ys~~------Qy~Sv~~iTi  130 (330)
T KOG1583|consen   60 PKIPLKDYAITVAMF---FIVNVTNNYALKFNIPMPLHIIFRSGSLLANMILGWILLGKRYSLR------QYSSVLMITI  130 (330)
T ss_pred             CCCchhhhheehhee---eeeeeeccceeeecccceEEEEEecCcHHHHHHHHHHhccceeehh------hhhhHHhhhh
Confidence            556666665543322   33333334455543 2333334555688999999999999999999      9999999999


Q ss_pred             hhhhheeecCCCCcCCCCCCCCCCccCCCCCccchhHHHHHHHHHHHHHHHHHHHHHHhhhc-hhHHHHHHHHHHHHHHH
Q 021377          105 GAFVVTFYKGPPLIGELSHSGSPRRLLLSPQLSWILGGFFLAAEAFMNSAWFILQALILRKF-AAVLIIMFYLFFFNTIL  183 (313)
Q Consensus       105 Gv~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~s~~~~a~~~v~~k~~~~~~-~~~~~~~~~~~~~~~~~  183 (313)
                      |+++.++.++++.+.  ..+.-.+++...+...|..|..+...+.+.-|.-.+.+...-+++ +++-..++|.-......
T Consensus       131 GiiIcTl~s~~d~~~--~~~~l~~~~~~~~~~~w~iGi~lL~~al~~sa~mgiyqE~~Y~kyGKh~~EalFytH~LsLP~  208 (330)
T KOG1583|consen  131 GIIICTLFSSKDGRS--KLSGLDSGSAQSDFFWWLIGIALLVFALLLSAYMGIYQETTYQKYGKHWKEALFYTHFLSLPL  208 (330)
T ss_pred             hheeEEeecCcchhh--hhcccccCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHhccch
Confidence            999998766655442  011111222223345567898888888777777777666554443 35667888888877665


Q ss_pred             HHHHHH-Hhcc-----CCCcccc-----cchhHHHHHHHHHHHHHHHHHHHHHHHhccCCceeeeechhhHHHHHHHHHH
Q 021377          184 STAFAL-IVVS-----EPSDWKL-----GLDIGLVAVLYSAVIGTGFRVGLCTWCLSRTGPLYVSMFKPLAIVFSIVMDV  252 (313)
Q Consensus       184 ~~~~~~-~~~~-----~~~~~~~-----~~~~~~~~ll~~g~~~s~~~~~l~~~a~~~~~a~~~s~~~~~~pv~a~i~~~  252 (313)
                      ++...- +..+     ..+....     .-+..|..++...+ ....+----+..-.+.++.+++++..+.-.++.++++
T Consensus       209 Flf~~~div~~~~~~~~se~~~~p~~g~~vP~~~~yLl~n~L-~Qy~CikgVy~L~te~~sLTVTlvltlRKFvSLl~Si  287 (330)
T KOG1583|consen  209 FLFMGDDIVSHWRLAFKSESYLIPLLGFKVPSMWVYLLFNVL-TQYFCIKGVYILTTETSSLTVTLVLTLRKFVSLLFSI  287 (330)
T ss_pred             HHHhcchHHHHHHHHhcCcceeccccCccccHHHHHHHHHHH-HHHHHHHhhhhhhceecceEEEEeeeHHHHHHHhhee
Confidence            554321 0000     0011111     11234544443332 2222222223345678888999999999999999999


Q ss_pred             HHhcCccchhhHHHHHHHHHHHHHHhcc
Q 021377          253 VIVGDAFCLGSLIGAMIIVAGFYAVMWG  280 (313)
Q Consensus       253 l~~ge~~~~~~~~G~~lii~g~~l~~~~  280 (313)
                      +.++.++++..|+|.+++..|-.++.-.
T Consensus       288 iyF~Npft~~h~lGa~lVF~Gt~~fa~~  315 (330)
T KOG1583|consen  288 IYFENPFTPWHWLGAALVFFGTLLFANV  315 (330)
T ss_pred             eEecCCCCHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999987643

>PF13536 EmrE: Multidrug resistance efflux transporter

Probab=98.96  E-value=6.8e-10  Score=86.01  Aligned_cols=76  Identities=21%  Similarity=0.370  Sum_probs=68.9

Q ss_pred             CHHHHHHHHHHHHHH-HHHHHHHHHhccccChhhHhHhhhhhHHHHHHHHHHHhhhcccccccccCcchhhHHhhhhhhh
Q 021377           29 TFSILCSFFLLSVFG-CSSQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAF  107 (313)
Q Consensus        29 ~~~~~~~~~~~g~~~-~~~~~~~~~al~~~~~~~a~ii~~~~P~~~~l~a~~~~~E~~~~~~~~~~~~~~g~~l~~~Gv~  107 (313)
                      +.|.+.+....|+++ ..++.++++|+++.+ +.++++.++.|+++.+++++++|||++++      ++.+++++++|++
T Consensus        30 ~~~~~~~~~~~g~~~~~~~~~~~~~a~~~~~-~~v~~i~~~~pi~~~ll~~~~~~er~~~~------~~~a~~l~~~Gv~  102 (113)
T PF13536_consen   30 RRKPWLWLILAGLLGFGVAYLLFFYALSYAP-ALVAAIFSLSPIFTALLSWLFFKERLSPR------RWLAILLILIGVI  102 (113)
T ss_pred             HhCcHHHHHHHHHHHHHHHHHHHHHHHHhCc-HHHHHHHHHHHHHHHHHHHHHhcCCCCHH------HHHHHHHHHHHHH
Confidence            445667777778888 699999999999999 58889999999999999999999999999      9999999999999


Q ss_pred             hhee
Q 021377          108 VVTF  111 (313)
Q Consensus       108 ll~~  111 (313)
                      ++..
T Consensus       103 li~~  106 (113)
T PF13536_consen  103 LIAW  106 (113)
T ss_pred             HHhh
Confidence            9953

>PF00892 EamA: EamA-like transporter family; InterPro: IPR000620 This domain is found in proteins including the Erwinia chrysanthemi PecM protein, which is involved in pectinase, cellulase and blue pigment regulation; and the Salmonella typhimurium PagO protein, the function of which is unknown

Probab=98.95  E-value=1.1e-09  Score=85.48  Aligned_cols=83  Identities=19%  Similarity=0.372  Sum_probs=75.5

Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHH-HHHHHHHHHhccccChhhHhHhhhhhHHHHHHHHHHHhhhcccccccccCcchhhH
Q 021377           21 YSTERPQLTFSILCSFFLLSVFG-CSSQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGT   99 (313)
Q Consensus        21 ~~~~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~al~~~~~~~a~ii~~~~P~~~~l~a~~~~~E~~~~~~~~~~~~~~g~   99 (313)
                      ++++.+..+.+++......|.++ ..++.+++.|+++++++.++++.++.|+++.+++++++||+++++      ++.|+
T Consensus        41 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~pv~~~i~~~~~~~e~~~~~------~~~g~  114 (126)
T PF00892_consen   41 GRKPFKNLSPRQWLWLLFLGLLGTALAYLLYFYALKYISASIVSILQYLSPVFAAILGWLFLGERPSWR------QIIGI  114 (126)
T ss_pred             ccccccCCChhhhhhhhHhhccceehHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHcCCCCCHH------HHHHH
Confidence            33333556778888888999997 999999999999999999999999999999999999999999999      99999


Q ss_pred             Hhhhhhhhhh
Q 021377          100 FASIGGAFVV  109 (313)
Q Consensus       100 ~l~~~Gv~ll  109 (313)
                      +++++|+.++
T Consensus       115 ~l~~~g~~l~  124 (126)
T PF00892_consen  115 ILIIIGVVLI  124 (126)
T ss_pred             HHHHHHHHHH
Confidence            9999999886

Many members of this family are classed as drug/metabolite transporters and have no known function. They are predicted to be integral membrane proteins and many of the proteins contain two copies of this domain [].; GO: 0016020 membrane

>KOG1442 consensus GDP-fucose transporter [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]

Probab=98.94  E-value=1.5e-09  Score=93.73  Aligned_cols=235  Identities=14%  Similarity=0.065  Sum_probs=170.1

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHhccccChhhHhHhhhhhHHHHHHHHHHHhhhcccccccccCcchhhHHhhhhhhh
Q 021377           28 LTFSILCSFFLLSVFGCSSQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAF  107 (313)
Q Consensus        28 ~~~~~~~~~~~~g~~~~~~~~~~~~al~~~~~~~a~ii~~~~P~~~~l~a~~~~~E~~~~~~~~~~~~~~g~~l~~~Gv~  107 (313)
                      ++.+....+.-+.+...+...+-.+++.|.+++.--+=-++..+|+.++.++++|||-+..      -..+..+.+.|-.
T Consensus        97 ldl~t~r~vlplsvVfi~mI~fnnlcL~yVgVaFYyvgRsLttvFtVlLtyvllkqkTs~~------~~~~C~lIi~GF~  170 (347)
T KOG1442|consen   97 LDLATARQVLPLSVVFILMISFNNLCLKYVGVAFYYVGRSLTTVFTVLLTYVLLKQKTSFF------ALGCCLLIILGFG  170 (347)
T ss_pred             ccHHHHHhhcchhheeeeehhccceehhhcceEEEEeccchhhhHHHHhHHhhcccccccc------cceeehhheehhe
Confidence            3444444444444444444455566778888877777777888999999999999999988      6666665555544


Q ss_pred             hheeecCCCCcCCCCCCCCCCccCCCCCccchhHHHHHHHHHHHHHHHHHHHHHHhhhch-hHHHHHHHHHHHHHHHHHH
Q 021377          108 VVTFYKGPPLIGELSHSGSPRRLLLSPQLSWILGGFFLAAEAFMNSAWFILQALILRKFA-AVLIIMFYLFFFNTILSTA  186 (313)
Q Consensus       108 ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~s~~~~a~~~v~~k~~~~~~~-~~~~~~~~~~~~~~~~~~~  186 (313)
                      +=.   +.               ++..+.-.+.|.++.+.++++-|+..+..|+...... .-+.++.|....+.++.+|
T Consensus       171 lGv---dq---------------E~~~~~ls~~GvifGVlaSl~vAlnaiytkk~l~~v~~~iw~lt~ynnv~a~lLflp  232 (347)
T KOG1442|consen  171 LGV---DQ---------------EGSTGTLSWIGVIFGVLASLAVALNAIYTKKVLPPVGDCIWRLTAYNNVNALLLFLP  232 (347)
T ss_pred             ecc---cc---------------ccccCccchhhhHHHHHHHHHHHHHHHhhheecccccCeehhhHHHHHHHHHHHHHH
Confidence            321   00               0112233468999999999999999999997654432 2378899999999999998


Q ss_pred             HHHHhccCCC---cc-cccchhHHHHHHHHHHHHHHHHHHHHHHHhccCCceeeeechhhHHHHHHHHHHHHhcCccchh
Q 021377          187 FALIVVSEPS---DW-KLGLDIGLVAVLYSAVIGTGFRVGLCTWCLSRTGPLYVSMFKPLAIVFSIVMDVVIVGDAFCLG  262 (313)
Q Consensus       187 ~~~~~~~~~~---~~-~~~~~~~~~~ll~~g~~~s~~~~~l~~~a~~~~~a~~~s~~~~~~pv~a~i~~~l~~ge~~~~~  262 (313)
                      ...+.+. .+   .+ ..+....|..+...|+++-.++|.-. +=++..+|.+-.+-....-..-.++++.+.+|.-+..
T Consensus       233 ll~lnge-~~~v~~~~~l~a~~Fw~~mtLsglfgF~mgyvTg-~QIK~TSplThnISgTAka~aQTvlAv~~y~E~ks~l  310 (347)
T KOG1442|consen  233 LLILNGE-FQAVVGFPHLPAIKFWILMTLSGLFGFAMGYVTG-WQIKVTSPLTHNISGTAKAAAQTVLAVAYYSETKSGL  310 (347)
T ss_pred             HHHHcch-HHHHcCcccchHHHHHHHHHHHHHHHHHhhheee-EEEEecccceeeecHhHHHHHHHHHHHHHHHHHhhhh
Confidence            8765542 21   11 12223467777777776665555432 4477789999898888888999999999999999999


Q ss_pred             hHHHHHHHHHHHHHHhcccccccccc
Q 021377          263 SLIGAMIIVAGFYAVMWGKSKEEKTT  288 (313)
Q Consensus       263 ~~~G~~lii~g~~l~~~~~~~~~~~~  288 (313)
                      -|-|-.+++.|-..+++.|+++.++.
T Consensus       311 wwtsn~~vLvgs~~YT~vk~~em~~~  336 (347)
T KOG1442|consen  311 WWTSNIVVLVGSLAYTLVKEHEMRKA  336 (347)
T ss_pred             eeeeeEEEEehhHHHHHHHHHHHHhh
Confidence            99999999999999999888876554

>KOG4314 consensus Predicted carbohydrate/phosphate translocator [General function prediction only]

Probab=98.90  E-value=1.5e-08  Score=83.59  Aligned_cols=210  Identities=19%  Similarity=0.206  Sum_probs=147.3

Q ss_pred             HHHHHHHHHHhccccChhhHhHhhhhhHHHHHHHHHHHhhhcccccccccCcchhhHHhhhhhhhhheeecCCCCcCCCC
Q 021377           43 GCSSQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVTFYKGPPLIGELS  122 (313)
Q Consensus        43 ~~~~~~~~~~al~~~~~~~a~ii~~~~P~~~~l~a~~~~~E~~~~~~~~~~~~~~g~~l~~~Gv~ll~~~~~~~~~~~~~  122 (313)
                      -.+.++.|..|+...++++++.+......|+.+++++.+|+|+.-.      ++.+.++++.|+.++.. -++       
T Consensus        63 Wt~aNY~Yl~AL~~is~s~asai~~CNaAFVfiLa~IVL~D~~~~~------kIlaailAI~GiVmiay-~DN-------  128 (290)
T KOG4314|consen   63 WTGANYLYLLALKKISASDASAIFACNAAFVFILAIIVLGDRFMGF------KILAAILAIGGIVMIAY-ADN-------  128 (290)
T ss_pred             EecCCcHHHHHHHhcChhhhHHHHHhhHHHHHHHHHHHhccchhhh------hHHHHHHHhCcEEEEEe-ccc-------
Confidence            3788999999999999999999999999999999999999999999      99999999999999863 121       


Q ss_pred             CCCCCCccCCCCCccchhHHHHHHHHHHHHHHHHHHHHHHhhhch--hHHHHHHHHHHHHHHHH-H-HHHHHhccCCCcc
Q 021377          123 HSGSPRRLLLSPQLSWILGGFFLAAEAFMNSAWFILQALILRKFA--AVLIIMFYLFFFNTILS-T-AFALIVVSEPSDW  198 (313)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~G~~~~l~s~~~~a~~~v~~k~~~~~~~--~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~  198 (313)
                                 .....+.|..++..++..-|+|.++-|+......  |....+...-++-.++. . ++.+.+. ..+.|
T Consensus       129 -----------~~a~e~iGi~~AV~SA~~aAlYKV~FK~~iGnAn~Gdaa~FmS~LGF~NL~~~~~~~lIL~~T-~VE~~  196 (290)
T KOG4314|consen  129 -----------EHADEIIGIACAVGSAFMAALYKVLFKMFIGNANFGDAAHFMSCLGFFNLCFISFPALILAFT-GVEHL  196 (290)
T ss_pred             -----------hhhhhhhhHHHHHHHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHHhhhHHHHHHh-chHHH
Confidence                       1123468999999999999999999998764321  11111111111111111 1 1111111 12233


Q ss_pred             cccchhHHHHHHHHHHHHHHHHHHHHHHHhccCCceeeeechhhHHHHHHHHHHHHhcCccchhhHHHHHHHHHHHHHHh
Q 021377          199 KLGLDIGLVAVLYSAVIGTGFRVGLCTWCLSRTGPLYVSMFKPLAIVFSIVMDVVIVGDAFCLGSLIGAMIIVAGFYAVM  278 (313)
Q Consensus       199 ~~~~~~~~~~ll~~g~~~s~~~~~l~~~a~~~~~a~~~s~~~~~~pv~a~i~~~l~~ge~~~~~~~~G~~lii~g~~l~~  278 (313)
                      +......|..+...+.+...+ -.+.+.++..+.|...|.-+....+--...+.++-+-..+...+.|..+|++|..+..
T Consensus       197 qsFA~~PWG~l~G~A~L~lAF-N~~iN~GiaL~~PilISiG~l~~iP~NaaiDiL~q~l~~ntl~La~T~iI~i~FiLii  275 (290)
T KOG4314|consen  197 QSFAAAPWGCLCGAAGLSLAF-NFLINFGIALLNPILISIGMLCGIPGNAAIDILFQELEFNTLFLAATCIICIGFILII  275 (290)
T ss_pred             HHHhhCCchhhhhHHHHHHHH-hhheeehhhhhchhhheehheecCcchhHHHHHHHHHHHHHHHHHHHHHHHHhHHhee
Confidence            322222355444443322222 2344577888889999998888888888999887777788889999999999988765


Q ss_pred             c
Q 021377          279 W  279 (313)
Q Consensus       279 ~  279 (313)
                      .
T Consensus       276 i  276 (290)
T KOG4314|consen  276 I  276 (290)
T ss_pred             c
Confidence            4

>PLN00411 nodulin MtN21 family protein; Provisional

Probab=98.90  E-value=2.9e-08  Score=92.09  Aligned_cols=140  Identities=9%  Similarity=0.068  Sum_probs=114.0

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHhccCCCcccccchhHHHHHHHHHHHHHH
Q 021377          139 ILGGFFLAAEAFMNSAWFILQALILRKFAAVLIIMFYLFFFNTILSTAFALIVVSEPSDWKLGLDIGLVAVLYSAVIGTG  218 (313)
Q Consensus       139 ~~G~~~~l~s~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~g~~~s~  218 (313)
                      ..-...+++.-++|+.+.++.|...++.-++....++++.++++++.++++..++.. .++......+..+..+|+++ .
T Consensus        12 ~~~~~~~~~~q~~~~~~~~~~k~a~~~G~~~~~~~~~R~~iA~l~Ll~~~~~~~~~~-~~~~~~~~~~~~l~l~g~~g-~   89 (358)
T PLN00411         12 AVFLTAMLATETSVVGISTLFKVATSKGLNIYPFLGYSYLLASLLLLPSLFFTNRSR-SLPPLSVSILSKIGLLGFLG-S   89 (358)
T ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHHHHHHHHHHHHhc-ccCcchHHHHHHHHHHHHHH-H
Confidence            345678888889999999999998876547899999999999999998876543211 11111123566777788876 4


Q ss_pred             HHHHHHHHHhccCCceeeeechhhHHHHHHHHHHHH------hcCccchhhHHHHHHHHHHHHHHhcc
Q 021377          219 FRVGLCTWCLSRTGPLYVSMFKPLAIVFSIVMDVVI------VGDAFCLGSLIGAMIIVAGFYAVMWG  280 (313)
Q Consensus       219 ~~~~l~~~a~~~~~a~~~s~~~~~~pv~a~i~~~l~------~ge~~~~~~~~G~~lii~g~~l~~~~  280 (313)
                      +.+.+++.++++++++.++.+.++.|+++.++++++      ++|+++..+++|.++-++|+.+....
T Consensus        90 ~~~~~~~~gl~~tsa~~asll~~~~P~~~~lla~~~~~e~~~~~er~~~~~~~G~~l~~~Gv~ll~~~  157 (358)
T PLN00411         90 MYVITGYIGIEYSNPTLASAISNITPALTFILAIIFRMEKVSFKERSSVAKVMGTILSLIGALVVIFY  157 (358)
T ss_pred             HHHHHHHHHHhhccHHHHHHHHHhhHHHHHHHHHHHHhchhhhcccccHHHHHHHHHHHHHHHHHHHc
Confidence            667789999999999999999999999999999999      69999999999999999999887643

>KOG3912 consensus Predicted integral membrane protein [General function prediction only]

Probab=98.89  E-value=3.3e-08  Score=85.77  Aligned_cols=224  Identities=13%  Similarity=0.134  Sum_probs=161.3

Q ss_pred             HHHHHHHHHHHHHHHhccccChhhHhHhhhhhHHHHHHHHHHHhhhcccccccccCcchhhHHhhhhhhhhheeecCCCC
Q 021377           38 LLSVFGCSSQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVTFYKGPPL  117 (313)
Q Consensus        38 ~~g~~~~~~~~~~~~al~~~~~~~a~ii~~~~P~~~~l~a~~~~~E~~~~~~~~~~~~~~g~~l~~~Gv~ll~~~~~~~~  117 (313)
                      .-+++...+..++|.|+.+++++.-+++-...-+|+.+++.-+++.+++.+      +|+|+.....|+..+.. .+-  
T Consensus        91 ~Pal~Di~gsslm~vgL~lTsASsfQMlRGaviIFvglfst~~Ln~ti~~~------qWl~i~fv~lGlviVg~-~d~--  161 (372)
T KOG3912|consen   91 PPALCDIAGSSLMYVGLNLTSASSFQMLRGAVIIFVGLFSTMFLNRTITGR------QWLGILFVSLGLVIVGS-LDV--  161 (372)
T ss_pred             ChHHHHHhhhHHHHHHHHHhhHHHHHHhhcchhhhhHHHHHHHHhcccchh------hHHHHHHHHhhhheeee-eec--
Confidence            356666778889999999999999999999999999999999999999999      99999999999998842 111  


Q ss_pred             cCCCCCCCCCCccCCCCCccchhHHHHHHHHHHHHHHHHHHHHHHhhhch-hHHHHHHHHHHHHHHHHHHHHHHhc--cC
Q 021377          118 IGELSHSGSPRRLLLSPQLSWILGGFFLAAEAFMNSAWFILQALILRKFA-AVLIIMFYLFFFNTILSTAFALIVV--SE  194 (313)
Q Consensus       118 ~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~s~~~~a~~~v~~k~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~--~~  194 (313)
                      ..        ..++-.+-.+-..|+++.+++-+.-|+-.++..|..+++. +|.....|.-++|.+++..++....  +.
T Consensus       162 ~~--------~~~p~~d~s~iitGdllIiiaqiivaiQ~v~Eek~l~~~nV~pl~avg~eGlfG~v~~slL~i~m~yi~~  233 (372)
T KOG3912|consen  162 HL--------VTDPYTDYSSIITGDLLIIIAQIIVAIQMVCEEKQLKKSNVAPLQAVGWEGLFGLVILSLLAIPMYYIPS  233 (372)
T ss_pred             cc--------ccCCccccccchhhhHHHHHHHHHHHHHHHHHHhhhhhccCCHHHHhhhhhhHHHHHHHHHHHHHhheec
Confidence            10        0111122345578999999999999999999888776542 5899999999999777666554221  10


Q ss_pred             CCcccccch---hHHH---------HHHHHHHHHHHHHHHHHHH----HhccCCceeeeechhhHHHHHHHHHHHHhcCc
Q 021377          195 PSDWKLGLD---IGLV---------AVLYSAVIGTGFRVGLCTW----CLSRTGPLYVSMFKPLAIVFSIVMDVVIVGDA  258 (313)
Q Consensus       195 ~~~~~~~~~---~~~~---------~ll~~g~~~s~~~~~l~~~----a~~~~~a~~~s~~~~~~pv~a~i~~~l~~ge~  258 (313)
                      ...++..+.   .+|.         ..++....+..++-.+++.    --+..++++=.+.-.+...+-=+++.....|.
T Consensus       234 ~~sfS~~~~g~~eD~~~~~~~~~e~p~l~val~~~~vSiAffNfaGlsitk~~SattRmllD~lRt~~IWv~si~m~~E~  313 (372)
T KOG3912|consen  234 GDSFSCNPRGVLEDWGDAFAALQESPSLAVALIGFTVSIAFFNFAGLSITKELSATTRMLLDSLRTYVIWVFSIAMGWEY  313 (372)
T ss_pred             CCcCcCCCCcchhhHHHHHHHhcCCchhHHHHhhhhhheeeeeehhhHHHHHhhHHHHHHHHhhhhhhhhHhHHHHHHHH
Confidence            001111110   0111         1233333333344444442    23456777777777888888888888889999


Q ss_pred             cchhhHHHHHHHHHHHHHHh
Q 021377          259 FCLGSLIGAMIIVAGFYAVM  278 (313)
Q Consensus       259 ~~~~~~~G~~lii~g~~l~~  278 (313)
                      ++..|+.|.++.+.|+.++.
T Consensus       314 f~llqilGFliLi~Gi~lY~  333 (372)
T KOG3912|consen  314 FHLLQILGFLILIMGIILYN  333 (372)
T ss_pred             HHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999886

>COG2510 Predicted membrane protein [Function unknown]

Probab=98.88  E-value=1.8e-09  Score=82.83  Aligned_cols=77  Identities=17%  Similarity=0.208  Sum_probs=73.6

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHhccccChhhHhHhhhhhHHHHHHHHHHHhhhcccccccccCcchhhHHhhhhhhh
Q 021377           28 LTFSILCSFFLLSVFGCSSQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAF  107 (313)
Q Consensus        28 ~~~~~~~~~~~~g~~~~~~~~~~~~al~~~~~~~a~ii~~~~P~~~~l~a~~~~~E~~~~~~~~~~~~~~g~~l~~~Gv~  107 (313)
                      .++|.|..+.+.|+.+.++.++||.|++...++....+..+.|+++.+++++++|||+|.+      +++|+.+..+|++
T Consensus        62 ~~~k~~lflilSGla~glswl~Yf~ALk~G~as~VvPldk~svvl~~lls~lfL~E~ls~~------~~iG~~LI~~Gai  135 (140)
T COG2510          62 IGPKSWLFLILSGLAGGLSWLLYFRALKKGKASRVVPLDKTSVVLAVLLSILFLGERLSLP------TWIGIVLIVIGAI  135 (140)
T ss_pred             cCcceehhhhHHHHHHHHHHHHHHHHHhcCCcceEEEcccccHHHHHHHHHHHhcCCCCHH------HHHHHHHHHhCee
Confidence            5788899999999888999999999999999999999999999999999999999999999      9999999999999


Q ss_pred             hhe
Q 021377          108 VVT  110 (313)
Q Consensus       108 ll~  110 (313)
                      ++.
T Consensus       136 lvs  138 (140)
T COG2510         136 LVS  138 (140)
T ss_pred             eEe
Confidence            874

>KOG1582 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]

Probab=98.83  E-value=1.2e-08  Score=88.12  Aligned_cols=225  Identities=10%  Similarity=0.118  Sum_probs=168.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhccccChhhHhHhhhhhHHHHHHHHHHHhhhcccccccccCcchhhHHhhhhhhhhheee
Q 021377           33 LCSFFLLSVFGCSSQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVTFY  112 (313)
Q Consensus        33 ~~~~~~~g~~~~~~~~~~~~al~~~~~~~a~ii~~~~P~~~~l~a~~~~~E~~~~~~~~~~~~~~g~~l~~~Gv~ll~~~  112 (313)
                      |..+..++.+....+.+..-++.|++=-.-.++..+--+-+++.+.++-+.|.++.      +.++..+..+|.++.++.
T Consensus       106 ~rtY~~la~~t~gtmGLsn~SlgYLNYPtQviFKccKliPVmiggifIqGkRY~v~------d~~aA~lm~lGli~FTLA  179 (367)
T KOG1582|consen  106 WRTYVILAFLTVGTMGLSNGSLGYLNYPTQVIFKCCKLIPVMIGGIFIQGKRYGVH------DYIAAMLMSLGLIWFTLA  179 (367)
T ss_pred             hhHhhhhHhhhhhccccCcCccccccCcHHHHHHhhhhhhhhheeeeeccccccHH------HHHHHHHHHHHHHhhhhc
Confidence            55566666666777777777888877555555555555556667888899999999      999999999999998752


Q ss_pred             cCCCCcCCCCCCCCCCccCCCCCccchhHHHHHHHHHHHHHHHHHHHHHHhhhch-hHHHHHHHHHHHHHHHHHHHHHHh
Q 021377          113 KGPPLIGELSHSGSPRRLLLSPQLSWILGGFFLAAEAFMNSAWFILQALILRKFA-AVLIIMFYLFFFNTILSTAFALIV  191 (313)
Q Consensus       113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~s~~~~a~~~v~~k~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~  191 (313)
                      +..                 .+..-...|..+.-.+.++-|.-..++.+..+..| +...+.+|.+.+|.+.++......
T Consensus       180 Ds~-----------------~sPNF~~~Gv~mIsgALl~DA~iGNvQEk~m~~~~~ss~EmvfySy~iG~vflf~~mvlT  242 (367)
T KOG1582|consen  180 DSQ-----------------TSPNFNLIGVMMISGALLADAVIGNVQEKAMKMNPASSSEMVFYSYGIGFVFLFAPMVLT  242 (367)
T ss_pred             ccc-----------------cCCCcceeeHHHHHHHHHHHHHhhHHHHHHHhhCCCCcceEEEeeecccHHHHHHHHHhc
Confidence            111                 12223457998888888898988888888877765 347888899999988887776655


Q ss_pred             ccCCCcccccch---hHHHHHHHHHHHHHHHHHHHHHHHhccCCceeeeechhhHHHHHHHHHHHHhcCccchhhHHHHH
Q 021377          192 VSEPSDWKLGLD---IGLVAVLYSAVIGTGFRVGLCTWCLSRTGPLYVSMFKPLAIVFSIVMDVVIVGDAFCLGSLIGAM  268 (313)
Q Consensus       192 ~~~~~~~~~~~~---~~~~~ll~~g~~~s~~~~~l~~~a~~~~~a~~~s~~~~~~pv~a~i~~~l~~ge~~~~~~~~G~~  268 (313)
                      ++-+..|..-..   ........... .+.++...-...++..|+..+..++...--+++++++++|..++|....-|..
T Consensus       243 ge~f~a~~fcaehp~~tyGy~~~~s~-~gylG~~~VLalI~~fGA~~aatvTTaRKavTi~lSfllFsKPfT~qy~~~gl  321 (367)
T KOG1582|consen  243 GELFSAWTFCAEHPVRTYGYAFLFSL-AGYLGIVFVLALIKLFGALIAATVTTARKAVTILLSFLLFSKPFTEQYVWSGL  321 (367)
T ss_pred             ccchhhhHHHHhCcHhHHHHHHHHHH-HhHhhHHHHHHHHHHhchhHHHHHHHhHhHHHHHHHHHHHcCchHHHHhhhhH
Confidence            543444432111   12223333332 45566677777889999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhccc
Q 021377          269 IIVAGFYAVMWGK  281 (313)
Q Consensus       269 lii~g~~l~~~~~  281 (313)
                      +++.|+++-.+.|
T Consensus       322 lv~lgI~Ln~ysk  334 (367)
T KOG1582|consen  322 LVVLGIYLNMYSK  334 (367)
T ss_pred             HHHHHHHhhcccC
Confidence            9999999977766

>PRK11272 putative DMT superfamily transporter inner membrane protein; Provisional

Probab=98.81  E-value=1.2e-07  Score=85.86  Aligned_cols=132  Identities=14%  Similarity=0.076  Sum_probs=109.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHhccCCCcccccchhHHHHHHHHHHHHHHHHH
Q 021377          142 GFFLAAEAFMNSAWFILQALILRKFAAVLIIMFYLFFFNTILSTAFALIVVSEPSDWKLGLDIGLVAVLYSAVIGTGFRV  221 (313)
Q Consensus       142 ~~~~l~s~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~g~~~s~~~~  221 (313)
                      .+..++-.+.|+...+..|...++. +|...+++++.+++++++++.......     ..+...+...+..|++...+.+
T Consensus        10 ~~~~~~~~~iWg~~~~~~K~~~~~~-~p~~~~~~R~~~a~l~ll~~~~~~~~~-----~~~~~~~~~~~~~g~~~~~~~~   83 (292)
T PRK11272         10 FGALFALYIIWGSTYLVIRIGVESW-PPLMMAGVRFLIAGILLLAFLLLRGHP-----LPTLRQWLNAALIGLLLLAVGN   83 (292)
T ss_pred             HHHHHHHHHHHhhHHHHHHHHhccC-CHHHHHHHHHHHHHHHHHHHHHHhCCC-----CCcHHHHHHHHHHHHHHHHHHH
Confidence            4667888899999999999888887 599999999999999888776532211     1123356666778877766788


Q ss_pred             HHHHHHh-ccCCceeeeechhhHHHHHHHHHHHHhcCccchhhHHHHHHHHHHHHHHhcc
Q 021377          222 GLCTWCL-SRTGPLYVSMFKPLAIVFSIVMDVVIVGDAFCLGSLIGAMIIVAGFYAVMWG  280 (313)
Q Consensus       222 ~l~~~a~-~~~~a~~~s~~~~~~pv~a~i~~~l~~ge~~~~~~~~G~~lii~g~~l~~~~  280 (313)
                      .+++.+. ++.++..++.+.++.|+++.+++++ ++|+++..+++|.++.++|+.+....
T Consensus        84 ~~~~~~~~~~~~a~~a~~l~~~~Pl~~~lla~~-~~e~~~~~~~~~~~la~~Gv~ll~~~  142 (292)
T PRK11272         84 GMVTVAEHQNVPSGIAAVVVATVPLFTLCFSRL-FGIRTRKLEWLGIAIGLAGIVLLNSG  142 (292)
T ss_pred             HHHHHHHHccCcHHHHHHHHHHHHHHHHHHHHH-hcccCchhHHHHHHHHHHhHHHHhcC
Confidence            8888998 9999999999999999999999985 79999999999999999999887643

>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter

Probab=98.80  E-value=5.7e-08  Score=86.06  Aligned_cols=119  Identities=13%  Similarity=0.043  Sum_probs=97.6

Q ss_pred             HHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHhccCCCcccccchhHHHHHHHHHHHHHHHHHHHHHHHhccC
Q 021377          152 NSAWFILQALILRKFAAVLIIMFYLFFFNTILSTAFALIVVSEPSDWKLGLDIGLVAVLYSAVIGTGFRVGLCTWCLSRT  231 (313)
Q Consensus       152 ~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~g~~~s~~~~~l~~~a~~~~  231 (313)
                      |+...+..|...++..++....+++.+.+.+.+.++....         .....+...+..|.++..+.+.++++++++.
T Consensus         1 Wg~~~~~~k~~~~~~~~~~~~~~~r~~~~~l~l~~~~~~~---------~~~~~~~~~~~~~~~~~~l~~~~~~~a~~~~   71 (260)
T TIGR00950         1 WGTTGVVIGQYLEGQVPLYFAVFRRLIFALLLLLPLLRRR---------PPLKRLLRLLLLGALQIGVFYVLYFVAVKRL   71 (260)
T ss_pred             CcchHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhc---------cCHhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            4555667777665443589999999998888777654321         1223556677777778889999999999999


Q ss_pred             CceeeeechhhHHHHHHHHHHHHhcCccchhhHHHHHHHHHHHHHHhc
Q 021377          232 GPLYVSMFKPLAIVFSIVMDVVIVGDAFCLGSLIGAMIIVAGFYAVMW  279 (313)
Q Consensus       232 ~a~~~s~~~~~~pv~a~i~~~l~~ge~~~~~~~~G~~lii~g~~l~~~  279 (313)
                      ++..++++..++|+++.+++.++++|++++.+++|.++.++|+.+...
T Consensus        72 ~~~~~~ii~~~~P~~~~~~~~l~~~e~~~~~~~~gi~i~~~Gv~li~~  119 (260)
T TIGR00950        72 PVGEAALLLYLAPLYVTLLSDLMGKERPRKLVLLAAVLGLAGAVLLLS  119 (260)
T ss_pred             ChhhhHHHHhhhHHHHHHHHHHHccCCCcHHHHHHHHHHHHhHHhhcc
Confidence            999999999999999999999999999999999999999999988753

>PF13536 EmrE: Multidrug resistance efflux transporter

Probab=98.78  E-value=3.2e-08  Score=76.57  Aligned_cols=108  Identities=13%  Similarity=0.260  Sum_probs=79.9

Q ss_pred             HHHHHHHHHHHHHHHHhccCCCcccccchhHHHHHHHHHHHHHHHHHHHHHHHhccCCceeeeechhhHHHHHHHHHHHH
Q 021377          175 YLFFFNTILSTAFALIVVSEPSDWKLGLDIGLVAVLYSAVIGTGFRVGLCTWCLSRTGPLYVSMFKPLAIVFSIVMDVVI  254 (313)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~g~~~s~~~~~l~~~a~~~~~a~~~s~~~~~~pv~a~i~~~l~  254 (313)
                      +++.++.+..........+..+.+.......+...+..|+++...++.+|.+++++.++ .++.+..+.|+++.++++++
T Consensus         3 ~r~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~a~~~~~~-~v~~i~~~~pi~~~ll~~~~   81 (113)
T PF13536_consen    3 FRYLFSVLFLLIILLIRGRLRDLFRALRRKPWLWLILAGLLGFGVAYLLFFYALSYAPA-LVAAIFSLSPIFTALLSWLF   81 (113)
T ss_pred             HHHHHHHHHHHHHHHHHccHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHhCcH-HHHHHHHHHHHHHHHHHHHH
Confidence            44555555555555443221111111112245566667777777999999999999995 88899999999999999999


Q ss_pred             hcCccchhhHHHHHHHHHHHHHHhccccc
Q 021377          255 VGDAFCLGSLIGAMIIVAGFYAVMWGKSK  283 (313)
Q Consensus       255 ~ge~~~~~~~~G~~lii~g~~l~~~~~~~  283 (313)
                      ++|+++..+++|.+++++|+.+..+.+..
T Consensus        82 ~~er~~~~~~~a~~l~~~Gv~li~~~~~~  110 (113)
T PF13536_consen   82 FKERLSPRRWLAILLILIGVILIAWSDLT  110 (113)
T ss_pred             hcCCCCHHHHHHHHHHHHHHHHHhhhhcc
Confidence            99999999999999999999998876543

>PF05653 Mg_trans_NIPA: Magnesium transporter NIPA; InterPro: IPR008521 This family consists of several eukaryotic proteins of unknown function

Probab=98.71  E-value=3e-07  Score=83.20  Aligned_cols=227  Identities=19%  Similarity=0.228  Sum_probs=127.4

Q ss_pred             HHHHHHH-HHHHHHHHHhccccChhhHhHhhhhhHHHHHHHHHHHhhhcccccccccCcchhhHHhhhhhhhhheeecCC
Q 021377           37 FLLSVFG-CSSQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVTFYKGP  115 (313)
Q Consensus        37 ~~~g~~~-~~~~~~~~~al~~~~~~~a~ii~~~~P~~~~l~a~~~~~E~~~~~~~~~~~~~~g~~l~~~Gv~ll~~~~~~  115 (313)
                      .+.|++. .++..+.+.|+.+.|.+..+.+..+.-++.++++..++|||++++      .+.|..+.+.|..++... ++
T Consensus        53 W~~G~~~~~~g~~~~~~Al~~ap~slv~Plg~~~lv~~~~~a~~~l~e~~~~~------~~~G~~l~i~G~~liv~~-~~  125 (300)
T PF05653_consen   53 WWIGLLLMVLGEILNFVALGFAPASLVAPLGALSLVFNAVLARFFLGEKLTRR------DIVGCALIILGSVLIVIF-AP  125 (300)
T ss_pred             HHHHHHHHhcchHHHHHHHHhhhHHHHHHHHhhhhhhHHHHhHHHhcccchHh------HHhhHHHHHhhheeeEEe-CC
Confidence            3456666 788889999999999999999999999999999999999999999      999999999999987653 32


Q ss_pred             CCcCCCCCCCCCCccCC----CCCccchhHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHH---HH
Q 021377          116 PLIGELSHSGSPRRLLL----SPQLSWILGGFFLAAEAFMNSAWFILQALILRKFAAVLIIMFYLFFFNTILSTA---FA  188 (313)
Q Consensus       116 ~~~~~~~~~~~~~~~~~----~~~~~~~~G~~~~l~s~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~~~---~~  188 (313)
                      .-+       +..+.++    -.+..+ ..+...... +...+.....+|..++.  .........++|+...+.   +.
T Consensus       126 ~~~-------~~~t~~~l~~~~~~~~f-l~y~~~~~~-~~~~L~~~~~~r~g~~~--i~vyi~i~sl~Gs~tvl~~K~i~  194 (300)
T PF05653_consen  126 KEE-------PIHTLDELIALLSQPGF-LVYFILVLV-LILILIFFIKPRYGRRN--ILVYISICSLIGSFTVLSAKAIS  194 (300)
T ss_pred             CCC-------CcCCHHHHHHHhcCcce-ehhHHHHHH-HHHHHHHhhcchhcccc--eEEEEEEeccccchhhhHHHHHH
Confidence            111       0000000    000111 112212222 22222222222222211  111111111222211111   00


Q ss_pred             -HHhccCCCcccccchhHHHHHHHHHHHHHHHHHHHHHHHhccCCceeeeechhh-HHHHHHHHHHHHhcCcc--ch---
Q 021377          189 -LIVVSEPSDWKLGLDIGLVAVLYSAVIGTGFRVGLCTWCLSRTGPLYVSMFKPL-AIVFSIVMDVVIVGDAF--CL---  261 (313)
Q Consensus       189 -~~~~~~~~~~~~~~~~~~~~ll~~g~~~s~~~~~l~~~a~~~~~a~~~s~~~~~-~pv~a~i~~~l~~ge~~--~~---  261 (313)
                       .+...-..+........|..++.+ +.+...-....++++++.+++.+.++.+. -...+++-+.++++|.-  +.   
T Consensus       195 ~~i~~~~~g~~~f~~~~~y~l~~~~-v~~~~~Q~~~LN~aL~~fd~~~V~P~~~v~~t~~~i~~g~i~f~e~~~~~~~~~  273 (300)
T PF05653_consen  195 ILIKLTFSGDNQFTYPLTYLLLLVL-VVTAVLQLYYLNKALKRFDTSLVVPVYYVFFTLSSIIGGAIFFQEFSRMTAWQI  273 (300)
T ss_pred             HHHHHHhcCchhhhhhHHHHHHHHH-HHHHHHHHHHHHHHHHhccceEEEeehhHHHHHHHHHHHHHHhcccccccHHHH
Confidence             011100001111112234333333 32444555566789999999999887776 45666777778899853  33   


Q ss_pred             -hhHHHHHHHHHHHHHHhcccc
Q 021377          262 -GSLIGAMIIVAGFYAVMWGKS  282 (313)
Q Consensus       262 -~~~~G~~lii~g~~l~~~~~~  282 (313)
                       ....|..+++.|+++....|.
T Consensus       274 ~~~~~G~~~ii~GV~lL~~~~~  295 (300)
T PF05653_consen  274 IGFLCGFLIIIIGVFLLSSSKD  295 (300)
T ss_pred             HHHHHHHHHHHHhhheeeccCc
Confidence             345678888899988764433

>COG5070 VRG4 Nucleotide-sugar transporter [Carbohydrate transport and metabolism / Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]

Probab=98.71  E-value=5.8e-08  Score=81.62  Aligned_cols=225  Identities=16%  Similarity=0.113  Sum_probs=166.5

Q ss_pred             HHHHHHHHHHHHHHHhccccChhhHhHhhhhhHHHHHHHHHHHhhhcccccccccCcchhhHHhhhhhhhhheeecCCCC
Q 021377           38 LLSVFGCSSQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVTFYKGPPL  117 (313)
Q Consensus        38 ~~g~~~~~~~~~~~~al~~~~~~~a~ii~~~~P~~~~l~a~~~~~E~~~~~~~~~~~~~~g~~l~~~Gv~ll~~~~~~~~  117 (313)
                      ...++-....+.--.++||.+...-+++.++.-+.++..-..++|.|++-.      .....++.+..-..-..  ++  
T Consensus        73 piSfLLv~MIyt~SKsLqyL~vpiYTiFKNltII~iAygEvl~Fgg~vtsl------~l~SFilMvlSS~va~w--~D--  142 (309)
T COG5070          73 PISFLLVVMIYTSSKSLQYLAVPIYTIFKNLTIILIAYGEVLFFGGRVTSL------ELLSFILMVLSSVVATW--GD--  142 (309)
T ss_pred             CHHHHHHHHHHhcccceeeeeeeHHHHhccceeehhHhhHHHHhcCccchh------hHHHHHHHHHHHHHhcc--ch--
Confidence            344444555566778999999999999999999999999999999999988      78877777666555431  11  


Q ss_pred             cCCCCCCCCCCccCCCCCccchhHHHHHHHHHHHHHHHHHHHHHHhh--hchhHHHHHHHHHHHHHHHHHHHHHHhccCC
Q 021377          118 IGELSHSGSPRRLLLSPQLSWILGGFFLAAEAFMNSAWFILQALILR--KFAAVLIIMFYLFFFNTILSTAFALIVVSEP  195 (313)
Q Consensus       118 ~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~s~~~~a~~~v~~k~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  195 (313)
                              +++  ..........|++|+....+.-+.|-+..|+..+  +. .....++|..+.+..+++.+...++. +
T Consensus       143 --------~q~--~~~~~~~lN~GY~Wm~~NclssaafVL~mrkri~ltNf-~d~dtmfYnNllslPiL~~~s~~~ed-w  210 (309)
T COG5070         143 --------QQA--SAFKAQILNPGYLWMFTNCLSSAAFVLIMRKRIKLTNF-KDFDTMFYNNLLSLPILLSFSFLFED-W  210 (309)
T ss_pred             --------hhH--HHHHhcccCCceEEEehhhHhHHHHHHHHHHhhccccc-chhhHHHHhhhHHHHHHHHHHHHhcc-C
Confidence                    000  0011234457999999999999999998887543  22 25678899999999998888887663 2


Q ss_pred             Ccccc---cchhHHHHHHHHHHHHHHHHHHHHHHHhccCCceeeeechhhHHHHHHHHHHHHhcCccchhhHHHHHHHHH
Q 021377          196 SDWKL---GLDIGLVAVLYSAVIGTGFRVGLCTWCLSRTGPLYVSMFKPLAIVFSIVMDVVIVGDAFCLGSLIGAMIIVA  272 (313)
Q Consensus       196 ~~~~~---~~~~~~~~ll~~g~~~s~~~~~l~~~a~~~~~a~~~s~~~~~~pv~a~i~~~l~~ge~~~~~~~~G~~lii~  272 (313)
                      .+-..   .+.....++...|+ ++..--++-.|+++.++++..+.+..+.-.-..+-|.+++||+.+...+....+-.+
T Consensus       211 s~~n~annl~~d~l~am~ISgl-~svgiSy~saWcvrVtSSTtySMvGALNKlp~alaGlvffdap~nf~si~sillGfl  289 (309)
T COG5070         211 SPGNLANNLSVDSLMAMFISGL-CSVGISYCSAWCVRVTSSTTYSMVGALNKLPIALAGLVFFDAPVNFLSIFSILLGFL  289 (309)
T ss_pred             CcchhhcCCChHHHHHHHHHHH-HHhhhhhccceeEeehhhhHHHHHHHhhhChHHHhhhhhcCCchhHHHHHHHHHHHH
Confidence            22111   11224567777787 444444566799999999999999999999999999999999999999999888877


Q ss_pred             HHHHHhccccccc
Q 021377          273 GFYAVMWGKSKEE  285 (313)
Q Consensus       273 g~~l~~~~~~~~~  285 (313)
                      ...++...+.+++
T Consensus       290 sg~iYavaks~k~  302 (309)
T COG5070         290 SGAIYAVAKSKKQ  302 (309)
T ss_pred             HHHHHHHHHHHHH
Confidence            7777766555433

>PRK11453 O-acetylserine/cysteine export protein; Provisional

Probab=98.70  E-value=3.3e-07  Score=83.18  Aligned_cols=127  Identities=13%  Similarity=0.107  Sum_probs=98.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHhccCCCcccccchhHHHHHHHHHHHHHHHHH
Q 021377          142 GFFLAAEAFMNSAWFILQALILRKFAAVLIIMFYLFFFNTILSTAFALIVVSEPSDWKLGLDIGLVAVLYSAVIGTGFRV  221 (313)
Q Consensus       142 ~~~~l~s~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~g~~~s~~~~  221 (313)
                      .+++++++++|+...+..|...++. +|....++++.++++.++++..   .+.  .      .+..++..|++.....+
T Consensus         6 ~l~~l~~~~~Wg~~~~~~k~~~~~~-~p~~~~~~R~~~a~~~l~~~~~---~~~--~------~~~~~~~~g~~~~~~~~   73 (299)
T PRK11453          6 GVLALLVVVVWGLNFVVIKVGLHNM-PPLMLAGLRFMLVAFPAIFFVA---RPK--V------PLNLLLGYGLTISFGQF   73 (299)
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHHHhc---CCC--C------chHHHHHHHHHHHHHHH
Confidence            3668899999999999999888888 5999999999998766554321   111  1      12223334544444555


Q ss_pred             HHHHHHhcc-CCceeeeechhhHHHHHHHHHHHHhcCccchhhHHHHHHHHHHHHHHhcc
Q 021377          222 GLCTWCLSR-TGPLYVSMFKPLAIVFSIVMDVVIVGDAFCLGSLIGAMIIVAGFYAVMWG  280 (313)
Q Consensus       222 ~l~~~a~~~-~~a~~~s~~~~~~pv~a~i~~~l~~ge~~~~~~~~G~~lii~g~~l~~~~  280 (313)
                      .+++.++++ .++..++.+....|+++.++++++++|+++..+++|.++.++|+.+..+.
T Consensus        74 ~~~~~~~~~~~~a~~a~~l~~~~pi~~~ll~~~~l~e~~~~~~~~~~~l~~~Gv~ll~~~  133 (299)
T PRK11453         74 AFLFCAINFGMPAGLASLVLQAQAFFTIVLGAFTFGERLQGKQLAGIALAIFGVLVLIED  133 (299)
T ss_pred             HHHHHHHHhcCCHHHHHHHHHhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHhHHHhccc
Confidence            667788887 67889999999999999999999999999999999999999999887643

>PRK11689 aromatic amino acid exporter; Provisional

Probab=98.66  E-value=5.9e-07  Score=81.40  Aligned_cols=131  Identities=13%  Similarity=-0.014  Sum_probs=98.2

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHhccCCCcccccchhHHHHHHHHHHHHHHH
Q 021377          140 LGGFFLAAEAFMNSAWFILQALILRKFAAVLIIMFYLFFFNTILSTAFALIVVSEPSDWKLGLDIGLVAVLYSAVIGTGF  219 (313)
Q Consensus       140 ~G~~~~l~s~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~g~~~s~~  219 (313)
                      .+.++++++.++|+......|...++.| |....++++..+++++.++.   ..  ...+..   .+...+. +.+....
T Consensus         4 ~~~l~~l~a~~~Wg~~~~~~k~~~~~~~-P~~~~~~R~~~a~l~l~~~~---~~--~~~~~~---~~~~~~~-~~l~~~~   73 (295)
T PRK11689          4 KATLIGLIAILLWSTMVGLIRGVSESLG-PVGGAAMIYSVSGLLLLLTV---GF--PRLRQF---PKRYLLA-GGLLFVS   73 (295)
T ss_pred             chhHHHHHHHHHHHHHHHHHHHHHccCC-hHHHHHHHHHHHHHHHHHHc---cc--cccccc---cHHHHHH-HhHHHHH
Confidence            3578899999999999999999988985 99999999999988877642   11  111111   1212222 2223334


Q ss_pred             HHHHHHHHh----ccCCceeeeechhhHHHHHHHHHHHHhcCccchhhHHHHHHHHHHHHHHhcc
Q 021377          220 RVGLCTWCL----SRTGPLYVSMFKPLAIVFSIVMDVVIVGDAFCLGSLIGAMIIVAGFYAVMWG  280 (313)
Q Consensus       220 ~~~l~~~a~----~~~~a~~~s~~~~~~pv~a~i~~~l~~ge~~~~~~~~G~~lii~g~~l~~~~  280 (313)
                      .+.+++.++    +..++..++.+.++.|++++++++++++|+++..+++|.++.++|+.+....
T Consensus        74 ~~~~~~~a~~~~~~~~~a~~a~~l~~~~Pi~~~ll~~~~~~e~~~~~~~~g~~l~~~Gv~li~~~  138 (295)
T PRK11689         74 YEICLALSLGYANTRRQAIEVGMVNYLWPSLTILFAVLFNGQKANWLLIPGLLLALAGVAWVLGG  138 (295)
T ss_pred             HHHHHHHHHHHhhccccchHHHHHHHHhHHHHHHHHHHHhcCCccHHHHHHHHHHHHhHhheecC
Confidence            444455554    4577888899999999999999999999999999999999999999887643

>PTZ00343 triose or hexose phosphate/phosphate translocator; Provisional

Probab=98.65  E-value=1e-06  Score=81.75  Aligned_cols=136  Identities=13%  Similarity=0.111  Sum_probs=102.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHhccCCCcccccchhHHHHHHHHHHHHHHHHH
Q 021377          142 GFFLAAEAFMNSAWFILQALILRKFAAVLIIMFYLFFFNTILSTAFALIVVSEPSDWKLGLDIGLVAVLYSAVIGTGFRV  221 (313)
Q Consensus       142 ~~~~l~s~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~g~~~s~~~~  221 (313)
                      ..+.+.--.+...+++.+|...+..|-|..++.++++++.+...++......+.+++. .....+..++.+|++.. ..+
T Consensus        51 ~~~~~~wy~~s~~~~~~nK~vl~~~~~P~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~llp~gl~~~-~~~  128 (350)
T PTZ00343         51 ALLFLTWYALNVLYVVDNKLALNMLPLPWTISSLQLFVGWLFALLYWATGFRKIPRIK-SLKLFLKNFLPQGLCHL-FVH  128 (350)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHhCCCCCCCCC-CHHHHHHHHHHHHHHHH-HHH
Confidence            3344444444556677889998888449999999999998765544221111111121 12335667788888655 457


Q ss_pred             HHHHHHhccCCceeeeechhhHHHHHHHHHHHHhcCccchhhHHHHHHHHHHHHHHhc
Q 021377          222 GLCTWCLSRTGPLYVSMFKPLAIVFSIVMDVVIVGDAFCLGSLIGAMIIVAGFYAVMW  279 (313)
Q Consensus       222 ~l~~~a~~~~~a~~~s~~~~~~pv~a~i~~~l~~ge~~~~~~~~G~~lii~g~~l~~~  279 (313)
                      ...+.++++.+++.++++...+|++++++++++++|+++..++.|.+++++|+.+...
T Consensus       129 ~~~~~sl~~~svs~~~iika~~Pvft~lls~~~l~ek~s~~~~l~l~l~v~Gv~l~~~  186 (350)
T PTZ00343        129 FGAVISMGLGAVSFTHVVKAAEPVFTALLSILFLKQFLNLYAYLSLIPIVGGVALASV  186 (350)
T ss_pred             HHHHHHHhhccHHHHHHHHHhhHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHheec
Confidence            7777999999999999999999999999999999999999999999999999998753

>TIGR00817 tpt Tpt phosphate/phosphoenolpyruvate translocator

Probab=98.65  E-value=3.8e-07  Score=82.87  Aligned_cols=122  Identities=15%  Similarity=0.117  Sum_probs=96.8

Q ss_pred             HHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHhccCCCcccccchhHHHHHHHHHHHHHHHHHHHHHHHhccCC
Q 021377          153 SAWFILQALILRKFAAVLIIMFYLFFFNTILSTAFALIVVSEPSDWKLGLDIGLVAVLYSAVIGTGFRVGLCTWCLSRTG  232 (313)
Q Consensus       153 a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~g~~~s~~~~~l~~~a~~~~~  232 (313)
                      ..+++++|...++.+.|...+++++.++.+...+.......+..  . ....++..++..|++ ..+.+.+.++++++++
T Consensus        15 ~~~~~~NK~~l~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-~~~~~~~~~~~~g~~-~~~~~~~~~~~l~~~s   90 (302)
T TIGR00817        15 VYFNIYNKKLLNVFPYPYFKTLISLAVGSLYCLLSWSSGLPKRL--K-ISSALLKLLLPVAIV-HTIGHVTSNVSLSKVA   90 (302)
T ss_pred             HHHHHHHHHHHhhCChhHHHHHHHHHHHHHHHHHHHHhCCCCCC--C-CCHHHHHHHHHHHHH-HHHHHHHHHHHHHhcc
Confidence            34556789988885569999999999887765544111111111  1 223477788888886 4688899999999999


Q ss_pred             ceeeeechhhHHHHHHHHHHHHhcCccchhhHHHHHHHHHHHHHHh
Q 021377          233 PLYVSMFKPLAIVFSIVMDVVIVGDAFCLGSLIGAMIIVAGFYAVM  278 (313)
Q Consensus       233 a~~~s~~~~~~pv~a~i~~~l~~ge~~~~~~~~G~~lii~g~~l~~  278 (313)
                      ++..+++..+.|++++++++++++|+++..+++|.++++.|+.+..
T Consensus        91 ~s~~~li~~~~Pv~~~ll~~~~~~e~~~~~~~~~l~l~~~Gv~l~~  136 (302)
T TIGR00817        91 VSFTHTIKAMEPFFSVVLSAFFLGQEFPSTLWLSLLPIVGGVALAS  136 (302)
T ss_pred             HHHHHHHHhcchHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHhhhc
Confidence            9999999999999999999999999999999999999999998754

specificities overlap.

>PRK15051 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE; Provisional

Probab=98.63  E-value=2.7e-07  Score=71.08  Aligned_cols=67  Identities=15%  Similarity=0.126  Sum_probs=62.2

Q ss_pred             HHHHHHHHHHHHHHHHhccCCceeeeechhhHHHHHHHHHHHHhcCccchhhHHHHHHHHHHHHHHh
Q 021377          212 SAVIGTGFRVGLCTWCLSRTGPLYVSMFKPLAIVFSIVMDVVIVGDAFCLGSLIGAMIIVAGFYAVM  278 (313)
Q Consensus       212 ~g~~~s~~~~~l~~~a~~~~~a~~~s~~~~~~pv~a~i~~~l~~ge~~~~~~~~G~~lii~g~~l~~  278 (313)
                      .++++.++++.+|.+++++.+.+++-.+..+.++++.+++++++||++++.+++|.++++.|+.+..
T Consensus        42 ~~~~~~~l~~~~~~~al~~iplg~Ay~~~~l~~v~~~~~~~l~f~E~ls~~~~~Gi~lii~Gv~~i~  108 (111)
T PRK15051         42 LALACLGLAMVLWLLVLQNVPVGIAYPMLSLNFVWVTLAAVKLWHEPVSPRHWCGVAFIIGGIVILG  108 (111)
T ss_pred             HHHHHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHh
Confidence            4446778899999999999999999999999999999999999999999999999999999998764

>TIGR00803 nst UDP-galactose transporter

Probab=98.62  E-value=1.5e-07  Score=81.68  Aligned_cols=207  Identities=10%  Similarity=-0.009  Sum_probs=123.8

Q ss_pred             hhHhHhhhhhHHHHHHHHHHHhhhcccccccccCcchhhHHhhhhhhhhheeecCCCCc--------CCCCCCCCCCccC
Q 021377           60 TLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVTFYKGPPLI--------GELSHSGSPRRLL  131 (313)
Q Consensus        60 ~~a~ii~~~~P~~~~l~a~~~~~E~~~~~~~~~~~~~~g~~l~~~Gv~ll~~~~~~~~~--------~~~~~~~~~~~~~  131 (313)
                      .......+..++++++..+...++|.+..      |+++.++...|++.-.. ++....        ....+.+ ...+.
T Consensus         5 Pa~~~~~s~~l~~v~l~~~~~~~~~~~~~------~i~~~~l~~~g~l~~~l-s~~q~~al~~l~~~~~~~~~~-~~~~~   76 (222)
T TIGR00803         5 PIHIIFKQNNLVLIALGNLLAAGKQVTQL------KILSTALMTLGSLVASL-GDDQWFSLKLLKLGVAIVQMV-QSSAK   76 (222)
T ss_pred             cchHHHHhcchHHHHHhcccccceeeehH------HHHHHHHHHHHHHHhHh-hHHHHHHHHHHHHhHeeeecC-CCCcc
Confidence            34456677888888888888888888877      88888888888774321 000000        0000000 00000


Q ss_pred             CCCCccchhHHHHHHHHHHHHHHHHHHHHHHhhhchh-HHHHHHHHHHHHHHHHHHHHHHhccCC-CcccccchhHHHHH
Q 021377          132 LSPQLSWILGGFFLAAEAFMNSAWFILQALILRKFAA-VLIIMFYLFFFNTILSTAFALIVVSEP-SDWKLGLDIGLVAV  209 (313)
Q Consensus       132 ~~~~~~~~~G~~~~l~s~~~~a~~~v~~k~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l  209 (313)
                      ....++...|....+.+.++-+...+.+++..++... ...-+....+++.+...........+. .++....  .+...
T Consensus        77 ~~~~g~~~~g~~~~l~a~~~~~~~~~y~e~~~k~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~  154 (222)
T TIGR00803        77 TLMFGNPVVGLSAVLSALLSSGFAGVYFEKILKDGDTMFWSRNLQLPLFGLFSTFSVLLWSDGTLISNFGFFI--GYPTA  154 (222)
T ss_pred             ccccccHHHHHHHHHHHHHHHhhhHHHHHHcccCCCCchHHHHHHHHHHHHHHHHHHHhhcccchhhccCccc--CCchH
Confidence            1112344567777777777777788888776554321 111222222222222111111111110 1111000  11111


Q ss_pred             HHHHHHHHHHHHHHHHHHhccCCceeeeechhhHHHHHHHHHHHHhcCccchhhHHHHHHHHHHHHH
Q 021377          210 LYSAVIGTGFRVGLCTWCLSRTGPLYVSMFKPLAIVFSIVMDVVIVGDAFCLGSLIGAMIIVAGFYA  276 (313)
Q Consensus       210 l~~g~~~s~~~~~l~~~a~~~~~a~~~s~~~~~~pv~a~i~~~l~~ge~~~~~~~~G~~lii~g~~l  276 (313)
                      .+.-++...++..+..+.+++.++...+....++++++.+++++++||+++..++.|+.+++.|+++
T Consensus       155 ~~~~~~~~a~~~~~v~~vlk~~~~~~~~~~~~~~~~~s~lls~~~f~~~ls~~~~~g~~lV~~~~~l  221 (222)
T TIGR00803       155 VWIVGLLNVGGGLCIGGVVRYADNTTKSFVTALSIILSTLASVRLFDAKISSTFYLGAILVFLATFL  221 (222)
T ss_pred             HHHHHHHHHhcCceeeehhHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHeeeEe
Confidence            2222235667888899999999999999999999999999999999999999999999999988764

NSTs generally appear to function by antiport mechanisms, exchanging a nucleotide-sugar for a nucleotide. Thus, CMP-sialic acid is exchanged for CMP; GDP-mannose is preferentially exchanged for GMP, and UDP-galactose and UDP-N-acetylglucosamine are exchanged for UMP (or possibly UDP). Other nucleotide sugars (e.g., GDP-fucose, UDP-xylose, UDP-glucose, UDP-N-acetylgalactosamine, etc.) may also be transported in exchange for various nucleotides, but their transporters have not been molecularly characterized. Each compound appears to be translocated by its own transport protein. Transport allows the compound, synthesized in the cytoplasm, to be exported to the lumen of the Golgi apparatus or the endoplasmic reticulum where it is used for the synthesis of glycoproteins and glycolipids.

>PRK13499 rhamnose-proton symporter; Provisional

Probab=98.54  E-value=2.5e-05  Score=71.58  Aligned_cols=242  Identities=11%  Similarity=0.073  Sum_probs=147.3

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHhccccChhhHhHhh-hhhHHHHHHHHHHHhhhccccc-ccccCcchhhHHhhhhh
Q 021377           28 LTFSILCSFFLLSVFGCSSQIFSFVGIQYSSPTLSTAML-NLIPAFTFVLAIIFRLEKLNWE-NKSSQAKSLGTFASIGG  105 (313)
Q Consensus        28 ~~~~~~~~~~~~g~~~~~~~~~~~~al~~~~~~~a~ii~-~~~P~~~~l~a~~~~~E~~~~~-~~~~~~~~~g~~l~~~G  105 (313)
                      .+.+.+...++.|.+-...+..++.++++.+.+.+..+. .+.-+...++..++++|=.+.. ......-.+|+++.++|
T Consensus        68 ~~~~~~~~~~l~G~~W~iG~i~~~~s~~~iGvS~~~pIs~Gl~lv~gtL~~~i~~gew~~~~~t~~g~~~~~gv~liliG  147 (345)
T PRK13499         68 FSGSTLLPVFLFGALWGIGGITYGLTMRYLGMSLGIGIAIGITLIVGTLMPPIINGNFDVLLATNGGRMTLLGVLVALIG  147 (345)
T ss_pred             cCHHHHHHHHHHHHHHHhhhhhHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHccccccccccchHHHHHHHHHHHHHH
Confidence            466777777888888899999999999999999998774 4888999999999988754111 11222257888889999


Q ss_pred             hhhheeecCCCCcCCCCCCCCCCccCCCCCccchhHHHHHHHHHHHHHHHH-------HHHHHHh-hhchhHHHHHHHHH
Q 021377          106 AFVVTFYKGPPLIGELSHSGSPRRLLLSPQLSWILGGFFLAAEAFMNSAWF-------ILQALIL-RKFAAVLIIMFYLF  177 (313)
Q Consensus       106 v~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~s~~~~a~~~-------v~~k~~~-~~~~~~~~~~~~~~  177 (313)
                      +++.... +...+    ++   .++++.++.+..+|.++++++.+.++.|.       ...+... .+. ++.....-++
T Consensus       148 i~l~s~A-g~~k~----~~---~~~~~~~~~~~~KGi~ialisgi~~~~f~~~~~~~~~~~~~a~~~g~-~~~~~~lp~~  218 (345)
T PRK13499        148 VAIVGRA-GQLKE----RK---MGIKKAEEFNLKKGLILAVMSGIFSACFSFAMDAGKPMHEAAAALGV-DPLYAALPSY  218 (345)
T ss_pred             HHHHHHh-hhhcc----cc---cccccccccchHhHHHHHHHHHHHHHHHHHHHhhccchhhhhhhcCC-CchHHHHHHH
Confidence            9988531 10000    00   00000234566789999999999999999       4443311 122 2322222222


Q ss_pred             H---HHHHHHHHH-HHH---hccCCC---cccccc---hhHHHHHHHHHHHHHHHHHHHHHHHhccCCceeeee---ch-
Q 021377          178 F---FNTILSTAF-ALI---VVSEPS---DWKLGL---DIGLVAVLYSAVIGTGFRVGLCTWCLSRTGPLYVSM---FK-  240 (313)
Q Consensus       178 ~---~~~~~~~~~-~~~---~~~~~~---~~~~~~---~~~~~~ll~~g~~~s~~~~~l~~~a~~~~~a~~~s~---~~-  240 (313)
                      .   .|..+.-.. ..+   ..++..   +.....   ......-+..|+ .=.++..+|..+-++.+......   +. 
T Consensus       219 ~~~~~G~~~~n~~~~~~~~~k~~~~~~~~~~~~~~~~~~~n~l~~~l~G~-~W~~~~~~y~~~~~~~g~~~~~~sw~l~m  297 (345)
T PRK13499        219 VVIMGGGAITNLGFCFIRLAKNKDLSLKADFSLAKPLLITNVLLSALAGV-MWYLQFFFYAMGHSKLGAQYDFVSWMLHM  297 (345)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhCCCcccchhccccchhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHcCCccchHHHHHhc
Confidence            2   343333221 111   111111   111110   112222233333 34466677777777776554433   33 


Q ss_pred             hhHHHHHHHHHHHHhcCccc------hhhHHHHHHHHHHHHHHhcc
Q 021377          241 PLAIVFSIVMDVVIVGDAFC------LGSLIGAMIIVAGFYAVMWG  280 (313)
Q Consensus       241 ~~~pv~a~i~~~l~~ge~~~------~~~~~G~~lii~g~~l~~~~  280 (313)
                      -+..+++.+++. +++|.=+      ...++|.++++.|..+....
T Consensus       298 ~~~ViistlwGi-~lkE~K~a~~k~~~~l~~G~vliI~g~~lig~~  342 (345)
T PRK13499        298 SFYVLCGNLWGL-VLKEWKGASRRPVRVLSLGCVVIILAANIVGLG  342 (345)
T ss_pred             cHHHHHHHHhhh-hhhhccCCCccchhHHHHHHHHHHHHHHHHhhc
Confidence            667799999998 5999766      45678999999999887654

>PRK15051 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE; Provisional

Probab=98.44  E-value=9.6e-07  Score=67.98  Aligned_cols=68  Identities=16%  Similarity=0.146  Sum_probs=62.4

Q ss_pred             HHHHHHH-HHHHHHHHHhccccChhhHhHhhhhhHHHHHHHHHHHhhhcccccccccCcchhhHHhhhhhhhhhe
Q 021377           37 FLLSVFG-CSSQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVT  110 (313)
Q Consensus        37 ~~~g~~~-~~~~~~~~~al~~~~~~~a~ii~~~~P~~~~l~a~~~~~E~~~~~~~~~~~~~~g~~l~~~Gv~ll~  110 (313)
                      ...++++ ..+++++..++++.|.+.+-.+.++.|+++.+++++++|||++++      +++|+.+.+.|+.++.
T Consensus        40 ~~~~~~~~~l~~~~~~~al~~iplg~Ay~~~~l~~v~~~~~~~l~f~E~ls~~------~~~Gi~lii~Gv~~i~  108 (111)
T PRK15051         40 LGLALACLGLAMVLWLLVLQNVPVGIAYPMLSLNFVWVTLAAVKLWHEPVSPR------HWCGVAFIIGGIVILG  108 (111)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHhCCCCCHH------HHHHHHHHHHHHHHHh
Confidence            3445566 889999999999999999999988999999999999999999999      9999999999999874

>COG2962 RarD Predicted permeases [General function prediction only]

Probab=98.33  E-value=7.7e-06  Score=71.95  Aligned_cols=141  Identities=11%  Similarity=0.091  Sum_probs=111.9

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHhccCCCccc-ccchhHHHHHHHHHHHHH
Q 021377          139 ILGGFFLAAEAFMNSAWFILQALILRKFAAVLIIMFYLFFFNTILSTAFALIVVSEPSDWK-LGLDIGLVAVLYSAVIGT  217 (313)
Q Consensus       139 ~~G~~~~l~s~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ll~~g~~~s  217 (313)
                      ..|.++++.+-+.|+.-....|.+ ++.| +..+..++.+.+.+....+.....+...-++ ...+..+...+..++ -.
T Consensus         6 ~~Gil~~l~Ay~lwG~lp~y~kll-~~~~-~~eIlahRviwS~~~~l~ll~~~r~~~~~~~~~~~p~~~~~~~l~a~-li   82 (293)
T COG2962           6 RKGILLALLAYLLWGLLPLYFKLL-EPLP-ATEILAHRVIWSFPFMLALLFLLRQWRELKQLLKQPKTLLMLALTAL-LI   82 (293)
T ss_pred             cchhHHHHHHHHHHHHHHHHHHHH-ccCC-HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhCcHHHHHHHHHHH-HH
Confidence            369999999999999998888765 5564 8899999999998888777654432111111 122335556666666 44


Q ss_pred             HHHHHHHHHHhccCCceeeeechhhHHHHHHHHHHHHhcCccchhhHHHHHHHHHHHHHHhcccc
Q 021377          218 GFRVGLCTWCLSRTGPLYVSMFKPLAIVFSIVMDVVIVGDAFCLGSLIGAMIIVAGFYAVMWGKS  282 (313)
Q Consensus       218 ~~~~~l~~~a~~~~~a~~~s~~~~~~pv~a~i~~~l~~ge~~~~~~~~G~~lii~g~~l~~~~~~  282 (313)
                      +.-+.+|.|+..+..+..+|+--++.|++.+++|.++++|+++..|++..++..+|+..-.+...
T Consensus        83 ~~nW~lfiWAvn~g~~leaSLGY~InPL~~VllG~lflkErls~~Q~iAV~lA~~GV~~~~~~~g  147 (293)
T COG2962          83 GLNWWLFIWAVNNGHVLEASLGYFINPLVNVLLGRLFLKERLSRLQWIAVGLAAAGVLIQTWLLG  147 (293)
T ss_pred             HHHHHHhheecCCCchhHHHhHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHcC
Confidence            58899999999999999999999999999999999999999999999999999999987765443

>COG0697 RhaT Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]

Probab=98.31  E-value=1.9e-05  Score=70.58  Aligned_cols=141  Identities=18%  Similarity=0.257  Sum_probs=105.1

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHhccCCCcccccchhHHHHHHHHHHHHHH
Q 021377          139 ILGGFFLAAEAFMNSAWFILQALILRKFAAVLIIMFYLFFFNTILSTAFALIVVSEPSDWKLGLDIGLVAVLYSAVIGTG  218 (313)
Q Consensus       139 ~~G~~~~l~s~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~g~~~s~  218 (313)
                      ..+....+..++.|+......|...++..+.....+.+...+.....+... .. ........  ..+......+.+...
T Consensus         6 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~--~~~~~~~~~~~~~~~   81 (292)
T COG0697           6 LLGLLALLLWGLLWGLSFIALKLAVESLDPFLFAAALRFLIAALLLLPLLL-LE-PRGLRPAL--RPWLLLLLLALLGLA   81 (292)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcccCChHHHHHHHHHHHHHHHHHHHH-hh-cccccccc--cchHHHHHHHHHHHH
Confidence            457788888889999999999887776223555556577766666332222 11 11111111  124455666677888


Q ss_pred             HHHHHHHHHhccCCceeeeechhhHHHHHHHHHH-HHhcCccchhhHHHHHHHHHHHHHHhccccc
Q 021377          219 FRVGLCTWCLSRTGPLYVSMFKPLAIVFSIVMDV-VIVGDAFCLGSLIGAMIIVAGFYAVMWGKSK  283 (313)
Q Consensus       219 ~~~~l~~~a~~~~~a~~~s~~~~~~pv~a~i~~~-l~~ge~~~~~~~~G~~lii~g~~l~~~~~~~  283 (313)
                      ..+.+|+.++++.++..++.+.+..|+++.++++ ++++|+++..++.|..+.+.|+.+..+....
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~e~~~~~~~~~~~~~~~Gv~lv~~~~~~  147 (292)
T COG0697          82 LPFLLLFLALKYTSASVASLIIGLLPLFTALLAVLLLLGERLSLLQILGILLALAGVLLILLGGGG  147 (292)
T ss_pred             HHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHhHHheecCCCc
Confidence            9999999999999999999999999999999997 6679999999999999999999998765544

>PRK10452 multidrug efflux system protein MdtJ; Provisional

Probab=98.26  E-value=1.1e-05  Score=62.55  Aligned_cols=69  Identities=13%  Similarity=0.272  Sum_probs=59.0

Q ss_pred             HHHHHHHHHHHHHHHhccCCceeeeec-hhhHHHHHHHHHHHHhcCccchhhHHHHHHHHHHHHHHhccc
Q 021377          213 AVIGTGFRVGLCTWCLSRTGPLYVSMF-KPLAIVFSIVMDVVIVGDAFCLGSLIGAMIIVAGFYAVMWGK  281 (313)
Q Consensus       213 g~~~s~~~~~l~~~a~~~~~a~~~s~~-~~~~pv~a~i~~~l~~ge~~~~~~~~G~~lii~g~~l~~~~~  281 (313)
                      .+++-++++.++.+++++.+.+.+=.+ .-+.-+.+.+.+++++||++++.+++|+.+|+.|+.......
T Consensus        36 ~i~~~~~sf~~ls~al~~lplsiAYavw~GiG~v~~~~ig~~~f~E~~s~~~~~gi~lIi~GVi~l~l~~  105 (120)
T PRK10452         36 MLVMISLSYIFLSFAVKKIALGVAYALWEGIGILFITLFSVLLFDESLSLMKIAGLTTLVAGIVLIKSGT  105 (120)
T ss_pred             HHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhcCC
Confidence            444667899999999999999887444 467888899999999999999999999999999998886544

>PRK10532 threonine and homoserine efflux system; Provisional

Probab=98.25  E-value=3.2e-06  Score=76.54  Aligned_cols=96  Identities=17%  Similarity=0.190  Sum_probs=77.7

Q ss_pred             chhhhcchhhhhhcCCCCCCCCCCCCHHHHHHHHHHHHHH-HHHHHHHHHhccccChhhHhHhhhhhHHHHHHHHHHHhh
Q 021377            4 LSILMPSPVSFFFSVPSYSTERPQLTFSILCSFFLLSVFG-CSSQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRL   82 (313)
Q Consensus         4 ~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~al~~~~~~~a~ii~~~~P~~~~l~a~~~~~   82 (313)
                      ++++++.|+....    ..  ....+...+...+..|++. .+.+.++++++++.+++.++++.++.|+++.++++++++
T Consensus       185 ~~~~~l~~~~~~~----~~--~~~~~~~~~~~~l~lgv~~t~~~~~l~~~~~~~~~a~~as~~~~l~Pv~a~l~~~l~lg  258 (293)
T PRK10532        185 IAALIFVPIGALQ----AG--EALWHWSILPLGLAVAILSTALPYSLEMIALTRLPTRTFGTLMSMEPALAAVSGMIFLG  258 (293)
T ss_pred             HHHHHHHHHHHHc----cC--cccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhHHHHHHHhHHHHHHHHHHHHhC
Confidence            4455555655443    22  1223445555566788888 899999999999999999999999999999999999999


Q ss_pred             hcccccccccCcchhhHHhhhhhhhhhee
Q 021377           83 EKLNWENKSSQAKSLGTFASIGGAFVVTF  111 (313)
Q Consensus        83 E~~~~~~~~~~~~~~g~~l~~~Gv~ll~~  111 (313)
                      |++++.      +++|..+.+.|++....
T Consensus       259 E~~~~~------~~iG~~lIl~~~~~~~~  281 (293)
T PRK10532        259 ETLTLI------QWLALGAIIAASMGSTL  281 (293)
T ss_pred             CCCcHH------HHHHHHHHHHHHHHHHh
Confidence            999999      99999999999998853

>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein

Probab=98.24  E-value=1.3e-05  Score=72.53  Aligned_cols=131  Identities=11%  Similarity=0.031  Sum_probs=95.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHhccCCCcccccchhHHHHHHHHHHHHHHHH
Q 021377          141 GGFFLAAEAFMNSAWFILQALILRKFAAVLIIMFYLFFFNTILSTAFALIVVSEPSDWKLGLDIGLVAVLYSAVIGTGFR  220 (313)
Q Consensus       141 G~~~~l~s~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~g~~~s~~~  220 (313)
                      |.+++++++++|+...+..|+.. ..+ +....  ...++.++..........+.  ..  ....+..-+..|+ .-+++
T Consensus         2 ~~l~~lia~~~wGs~g~~~k~~~-g~~-~~~~~--~~~~g~l~~~~~~~~~~~~~--~~--~~~~~~~g~l~G~-~w~ig   72 (290)
T TIGR00776         2 DILIALIPALFWGSFVLINVKIG-GGP-YSQTL--GTTFGALILSIAIAIFVLPE--FW--ALSIFLVGLLSGA-FWALG   72 (290)
T ss_pred             chHHHHHHHHHHhhhHHHHhccC-CCH-HHHHH--HHHHHHHHHHHHHHHHhCCc--cc--ccHHHHHHHHHHH-HHHhh
Confidence            57899999999999999999875 443 43333  35555555554444332211  11  1113333333343 36688


Q ss_pred             HHHHHHHhccCCceeeeechh-hHHHHHHHHHHHHhcCccchhh----HHHHHHHHHHHHHHhcc
Q 021377          221 VGLCTWCLSRTGPLYVSMFKP-LAIVFSIVMDVVIVGDAFCLGS----LIGAMIIVAGFYAVMWG  280 (313)
Q Consensus       221 ~~l~~~a~~~~~a~~~s~~~~-~~pv~a~i~~~l~~ge~~~~~~----~~G~~lii~g~~l~~~~  280 (313)
                      +.+|..++++.+.+.+-++.+ ++++++.+++.+++||+.+..+    ++|.+++++|+++....
T Consensus        73 ~~~~~~ai~~~gva~a~~i~~~~~~v~~~l~~~~~f~e~~t~~~~~~~~~g~~l~l~G~~l~~~~  137 (290)
T TIGR00776        73 QINQFKSMRYMGVSKTMPISTGFQLVGGTLFGVIVFGEWSTSIQTLLGLLALILIIIGVYLTSRS  137 (290)
T ss_pred             hhhHHHHHHHHhHHHHhHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhHheEEec
Confidence            899999999999999988888 8999999999999999999999    99999999998887544

These proteins are members of the L-Rhamnose Symporter (RhaT) Family (TC 2.A.7). This family includes two characterized members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.

>KOG2922 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.24  E-value=5.7e-06  Score=73.59  Aligned_cols=220  Identities=17%  Similarity=0.159  Sum_probs=131.6

Q ss_pred             HHHHHH-HHHHHHHHHhccccChhhHhHhhhhhHHHHHHHHHHHhhhcccccccccCcchhhHHhhhhhhhhheeecCCC
Q 021377           38 LLSVFG-CSSQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVTFYKGPP  116 (313)
Q Consensus        38 ~~g~~~-~~~~~~~~~al~~~~~~~a~ii~~~~P~~~~l~a~~~~~E~~~~~~~~~~~~~~g~~l~~~Gv~ll~~~~~~~  116 (313)
                      ..|++. .++...-|.|+.+.|.+..+.+..+.-+..++++..+++||+++.      ..+|..++++|-.++.. ..|.
T Consensus        68 w~G~ltm~vGei~NFaAYaFAPasLVtPLGAlsvi~saila~~~L~Ekl~~~------g~lGc~l~v~Gst~iV~-haP~  140 (335)
T KOG2922|consen   68 WAGMLTMIVGEIANFAAYAFAPASLVTPLGALSVIISAILASFFLKEKLNLL------GILGCVLCVVGSTTIVI-HAPK  140 (335)
T ss_pred             HHHHHHHHHHhHhhHHHHhhchHhhhccchhHHHHHHHHHHHHHHHHHHHHh------hhhheeEEecccEEEEE-ecCc
Confidence            467777 888888999999999999999999999999999999999999999      99999999999999875 3331


Q ss_pred             CcCCCCCCCCCCccC---CCCCccchhHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHH-------
Q 021377          117 LIGELSHSGSPRRLL---LSPQLSWILGGFFLAAEAFMNSAWFILQALILRKFAAVLIIMFYLFFFNTILSTA-------  186 (313)
Q Consensus       117 ~~~~~~~~~~~~~~~---~~~~~~~~~G~~~~l~s~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~~~-------  186 (313)
                      -+       +..+..   ....+.-.+.....++..++.-++.  .|+   ++ ....+..|..+++.+-.+-       
T Consensus       141 e~-------~i~t~~el~~~~~~~~Fliy~~~iil~~~il~~~--~~p---~~-g~tnilvyi~i~s~iGS~tV~svKal  207 (335)
T KOG2922|consen  141 EQ-------EIESVEEVWELATEPGFLVYVIIIILIVLILIFF--YAP---RY-GQTNILVYIGICSLIGSLTVMSVKAL  207 (335)
T ss_pred             cc-------ccccHHHHHHHhcCccHHHHHHHHHHHHHHHhee--ecc---cc-cccceeehhhHhhhhcceeeeeHHHH
Confidence            11       111000   0000111112222222222222221  121   11 1112333333333331110       


Q ss_pred             ---HHHHhccCCCcccccchhHHHHHHHHHHHHHHHHHHHHHHHhccCCceeeeechhh-HHHHHHHHHHHHhcCccch-
Q 021377          187 ---FALIVVSEPSDWKLGLDIGLVAVLYSAVIGTGFRVGLCTWCLSRTGPLYVSMFKPL-AIVFSIVMDVVIVGDAFCL-  261 (313)
Q Consensus       187 ---~~~~~~~~~~~~~~~~~~~~~~ll~~g~~~s~~~~~l~~~a~~~~~a~~~s~~~~~-~pv~a~i~~~l~~ge~~~~-  261 (313)
                         +-+...+   ..+...+..|..++.+.. +...=..-.++|++..++..++++.++ -..+++.-+.++++|.-.. 
T Consensus       208 g~aiklt~~g---~~ql~~~~ty~~~l~~~~-~~~~Q~~yLNkAL~~fntslV~PiyyV~fTtl~I~as~I~Fkew~~~~  283 (335)
T KOG2922|consen  208 GIAIKLTFSG---NNQLFYPLTWIFLLVVAT-CVSTQMNYLNKALDLFNTSIVSPIYYVMFTTLVILASAILFKEWSGQD  283 (335)
T ss_pred             HHHHHHHhcC---CcccccHHHHHHHHHHHH-HHHHHHHHHHHHHHhhhhhhcchhHHHHHHHHHHHHHHHHHHHhcCCc
Confidence               0011111   112222234544444443 444444555799999999999888776 5667778888889986443 


Q ss_pred             -----hhHHHHHHHHHHHHHHhccc
Q 021377          262 -----GSLIGAMIIVAGFYAVMWGK  281 (313)
Q Consensus       262 -----~~~~G~~lii~g~~l~~~~~  281 (313)
                           ....|...++.|+++..+.|
T Consensus       284 ~~~i~~~~~Gf~ti~~G~flL~~~k  308 (335)
T KOG2922|consen  284 ALDIAGELCGFVTIFLGIFLLHRTK  308 (335)
T ss_pred             HHHHHHHHHhHHHhhheeeEeeeec
Confidence                 35578888889988875433

>COG4975 GlcU Putative glucose uptake permease [Carbohydrate transport and metabolism]

Probab=98.08  E-value=8.2e-07  Score=75.93  Aligned_cols=230  Identities=12%  Similarity=0.074  Sum_probs=150.0

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHHHHhccccChhhHhHhhh-hhHHHHHHHHHHHhhhcccccccccCcchhhHHhhh
Q 021377           25 RPQLTFSILCSFFLLSVFGCSSQIFSFVGIQYSSPTLSTAMLN-LIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASI  103 (313)
Q Consensus        25 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~al~~~~~~~a~ii~~-~~P~~~~l~a~~~~~E~~~~~~~~~~~~~~g~~l~~  103 (313)
                      .|..+.+.+..-++.|.+-...+...+.|+++.+++.+..+.+ ++-+-+.+++.+.++|=.+..+..  .-.+++++.+
T Consensus        51 ~p~~T~~~~iv~~isG~~Ws~GQ~~Qfka~~~iGVSkamPiStG~QLVg~sL~gV~~f~EW~t~~~~I--lG~iAliliv  128 (288)
T COG4975          51 SPELTLTIFIVGFISGAFWSFGQANQFKAIQLIGVSKAMPISTGMQLVGTSLFGVFVFHEWTTPTQII--LGFIALILIV  128 (288)
T ss_pred             cCccchhhHHHHHHhhhHhhhhhhhhhhheeeeeeeccccccchhhHhhceeeeEEEEeccCcchhHH--HHHHHHHHHH
Confidence            3556777777777888877999999999999999999999966 777888899999999977666100  0123455566


Q ss_pred             hhhhhheeecCCCCcCCCCCCCCCCccCCCCCccchhHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHH
Q 021377          104 GGAFVVTFYKGPPLIGELSHSGSPRRLLLSPQLSWILGGFFLAAEAFMNSAWFILQALILRKFAAVLIIMFYLFFFNTIL  183 (313)
Q Consensus       104 ~Gv~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~s~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~  183 (313)
                      +|+.+-.. +++.     ++       +.++..+.-.|....+.|.+.|-.|.++.+...  . |......- ..+|.++
T Consensus       129 iG~~lTs~-~~~~-----nk-------~~~~~~n~kkgi~~L~iSt~GYv~yvvl~~~f~--v-~g~saiLP-qAiGMv~  191 (288)
T COG4975         129 IGIYLTSK-QDRN-----NK-------EEENPSNLKKGIVILLISTLGYVGYVVLFQLFD--V-DGLSAILP-QAIGMVI  191 (288)
T ss_pred             HhheEeee-eccc-----cc-------cccChHhhhhheeeeeeeccceeeeEeeecccc--c-cchhhhhH-HHHHHHH
Confidence            67666532 1110     00       012234456899999999999999999877543  2 23322222 2333333


Q ss_pred             HHHHHHHhccCCCcccccchhHHHHHHHHHHHHHHHHHHHHHHHhccCCceeeeechhhHHHHHHHHHHHHhcCccchhh
Q 021377          184 STAFALIVVSEPSDWKLGLDIGLVAVLYSAVIGTGFRVGLCTWCLSRTGPLYVSMFKPLAIVFSIVMDVVIVGDAFCLGS  263 (313)
Q Consensus       184 ~~~~~~~~~~~~~~~~~~~~~~~~~ll~~g~~~s~~~~~l~~~a~~~~~a~~~s~~~~~~pv~a~i~~~l~~ge~~~~~~  263 (313)
                      .....-....     +...+...+.-+.-|+ .=+++-..+..+-++.+..+.=.+.-+..+++.+-+.++++|+=|..+
T Consensus       192 ~ali~~~~~~-----~~~~~K~t~~nii~G~-~Wa~GNl~ml~a~~~~GvAt~FSlSQlgViisTiGGIl~L~ekKtkkE  265 (288)
T COG4975         192 GALILGFFKM-----EKRFNKYTWLNIIPGL-IWAIGNLFMLLAAQKVGVATSFSLSQLGVIISTIGGILFLGEKKTKKE  265 (288)
T ss_pred             HHHHHhhccc-----ccchHHHHHHHHhhHH-HHHhhHHHHHHhhhhhceeeeeeHhhheeeeeecceEEEEeccCchhh
Confidence            2222211111     1111223333334444 234667777788888888777777778889999999999999988765


Q ss_pred             H----HHHHHHHHHHHHHhc
Q 021377          264 L----IGAMIIVAGFYAVMW  279 (313)
Q Consensus       264 ~----~G~~lii~g~~l~~~  279 (313)
                      +    +|.++++.|..+.-.
T Consensus       266 m~~v~iGiilivvgai~lg~  285 (288)
T COG4975         266 MVYVIIGIILIVVGAILLGI  285 (288)
T ss_pred             hhhhhhhHHHHHHHhhhhhe
Confidence            4    688888888776543

>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function

Probab=97.96  E-value=0.00015  Score=66.43  Aligned_cols=139  Identities=14%  Similarity=0.115  Sum_probs=92.6

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHhccCCCcccccchhHHHHHHHHHHHHHHH
Q 021377          140 LGGFFLAAEAFMNSAWFILQALILRKFAAVLIIMFYLFFFNTILSTAFALIVVSEPSDWKLGLDIGLVAVLYSAVIGTGF  219 (313)
Q Consensus       140 ~G~~~~l~s~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~g~~~s~~  219 (313)
                      .|.+++++-+..-...+.+..+ .-+.  |..-+++.+..-.++..+....- .+...+.......|+..+.+++ .-..
T Consensus        17 lgQ~lsl~~~~t~~~s~~l~~~-~~~~--P~~Qs~~~Y~~l~~vy~~~~~~r-~~~~~~~~~~~~~~w~y~lla~-~Dv~   91 (334)
T PF06027_consen   17 LGQVLSLCITGTGTFSSLLANK-GVNI--PTFQSFFNYVLLALVYTPILLYR-RGFKKWLKVLKRPWWKYFLLAL-LDVE   91 (334)
T ss_pred             HHHHHHHHHHhHHHHHHHHHhc-CccC--cHHHHHHHHHHHHHHHhhhhhhc-cccccchhhcchhHHHHHHHHH-HHHH
Confidence            3555555444444444444443 2222  44444444444444444433322 1222222222234555555666 5668


Q ss_pred             HHHHHHHHhccCCceeeeechhhHHHHHHHHHHHHhcCccchhhHHHHHHHHHHHHHHhccccc
Q 021377          220 RVGLCTWCLSRTGPLYVSMFKPLAIVFSIVMDVVIVGDAFCLGSLIGAMIIVAGFYAVMWGKSK  283 (313)
Q Consensus       220 ~~~l~~~a~~~~~a~~~s~~~~~~pv~a~i~~~l~~ge~~~~~~~~G~~lii~g~~l~~~~~~~  283 (313)
                      +-.++..|+++++.+.+.++.....++++++++++++++.++.+++|+++.+.|+.+....+..
T Consensus        92 aN~~~v~a~~yTsvtS~~lL~~~~i~~~~~LS~~fL~~ry~~~~~~gv~i~i~Gv~lv~~sD~~  155 (334)
T PF06027_consen   92 ANYLVVLAYQYTSVTSVQLLDCTSIPFVMILSFIFLKRRYSWFHILGVLICIAGVVLVVVSDVL  155 (334)
T ss_pred             HHHHHHHHhhcccHhHHHhhhhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhheeeeccc
Confidence            8999999999999999999999999999999999999999999999999999999988766543

Some of the sequences in this family are annotated as putative membrane proteins.

>PRK09541 emrE multidrug efflux protein; Reviewed

Probab=97.95  E-value=0.00011  Score=56.21  Aligned_cols=68  Identities=19%  Similarity=0.213  Sum_probs=56.9

Q ss_pred             HHHHHHHHHHHHHHhccCCceee-eechhhHHHHHHHHHHHHhcCccchhhHHHHHHHHHHHHHHhccc
Q 021377          214 VIGTGFRVGLCTWCLSRTGPLYV-SMFKPLAIVFSIVMDVVIVGDAFCLGSLIGAMIIVAGFYAVMWGK  281 (313)
Q Consensus       214 ~~~s~~~~~l~~~a~~~~~a~~~-s~~~~~~pv~a~i~~~l~~ge~~~~~~~~G~~lii~g~~l~~~~~  281 (313)
                      +++-++++.++..++++.+.+.+ +...-+..+.+.+.+++++||++++.+++|+.+|+.|+.......
T Consensus        37 ~~~~~~sf~~l~~al~~ipl~iAYavw~GlG~v~~~l~g~~~f~e~~~~~~~~gi~lIi~GVi~l~l~~  105 (110)
T PRK09541         37 IICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLVINLLS  105 (110)
T ss_pred             HHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence            44566888888999999888877 333557788889999999999999999999999999999986443

>PF08449 UAA: UAA transporter family; InterPro: IPR013657 This family includes transporters with a specificity for UDP-N-acetylglucosamine []

Probab=97.84  E-value=0.00024  Score=64.65  Aligned_cols=129  Identities=17%  Similarity=0.166  Sum_probs=94.5

Q ss_pred             HHHHHHHHHHHhhhch-h--HHHHHHHHHHHHHHHHHHHHHHhccCCCcccccchhHHHHHHHHHHHHHHHHHHHHHHHh
Q 021377          152 NSAWFILQALILRKFA-A--VLIIMFYLFFFNTILSTAFALIVVSEPSDWKLGLDIGLVAVLYSAVIGTGFRVGLCTWCL  228 (313)
Q Consensus       152 ~a~~~v~~k~~~~~~~-~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~g~~~s~~~~~l~~~a~  228 (313)
                      +..+.+.+++..++.+ .  +..+++.++.+..+...+.......+  +...   ..+...+..++ ...++..+-+.++
T Consensus        12 ~~~~g~~qE~i~~~~~~~~~~~~lt~~q~~~~~~~~~~~~~~~~~~--~~~~---~~~~~~~~~~~-~~~~~~~~~~~al   85 (303)
T PF08449_consen   12 CCSYGILQEKIMTTPYGSPFPLFLTFVQFAFNALFSFILLSLFKFP--KSRK---IPLKKYAILSF-LFFLASVLSNAAL   85 (303)
T ss_pred             HHHHHHHHHHHHcCCCCCcccHHHHHHHHHHHHHHHHHHHHhcccc--CCCc---ChHHHHHHHHH-HHHHHHHHHHHHH
Confidence            3345566777655432 3  67888888888887776655433311  1111   12333344444 5667888899999


Q ss_pred             ccCCceeeeechhhHHHHHHHHHHHHhcCccchhhHHHHHHHHHHHHHHhcccccccc
Q 021377          229 SRTGPLYVSMFKPLAIVFSIVMDVVIVGDAFCLGSLIGAMIIVAGFYAVMWGKSKEEK  286 (313)
Q Consensus       229 ~~~~a~~~s~~~~~~pv~a~i~~~l~~ge~~~~~~~~G~~lii~g~~l~~~~~~~~~~  286 (313)
                      ++++...-.+.....|+.++++++++++++.+..++.+.+++.+|+.+....+.++.+
T Consensus        86 ~~i~~p~~~~~ks~~~i~vmi~~~l~~~k~y~~~~~~~v~li~~Gv~~~~~~~~~~~~  143 (303)
T PF08449_consen   86 KYISYPTQIVFKSSKPIPVMILGVLILGKRYSRRQYLSVLLITIGVAIFTLSDSSSSS  143 (303)
T ss_pred             HhCChHHHHHHhhhHHHHHHHHHHHhcCccccHHHHHHHHHHHhhHheeeeccccccc
Confidence            9999999999999999999999999999999999999999999999998876655443

; GO: 0055085 transmembrane transport

>PF05653 Mg_trans_NIPA: Magnesium transporter NIPA; InterPro: IPR008521 This family consists of several eukaryotic proteins of unknown function

Probab=97.84  E-value=4.9e-05  Score=68.86  Aligned_cols=121  Identities=13%  Similarity=0.115  Sum_probs=88.5

Q ss_pred             ccchhHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHhccCCCcccccchhHHHHHHHHHHH
Q 021377          136 LSWILGGFFLAAEAFMNSAWFILQALILRKFAAVLIIMFYLFFFNTILSTAFALIVVSEPSDWKLGLDIGLVAVLYSAVI  215 (313)
Q Consensus       136 ~~~~~G~~~~l~s~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~g~~  215 (313)
                      .++..|..+++.|+++.+....++|+...+.+ ......-                .+....+.  .+ .|    +.|++
T Consensus         3 ~~~~iGv~lav~ss~~~~~g~~lqk~~~~r~~-~~~~~~~----------------~~~~~~l~--~~-~W----~~G~~   58 (300)
T PF05653_consen    3 TDFYIGVLLAVVSSIFIAVGFNLQKKSHLRLP-RGSLRAG----------------SGGRSYLR--RP-LW----WIGLL   58 (300)
T ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-ccccccc----------------chhhHHHh--hH-HH----HHHHH
Confidence            35678999999999999999999998766653 1000000                00000011  01 22    23333


Q ss_pred             HHHHHHHHHHHHhccCCceeeeechhhHHHHHHHHHHHHhcCccchhhHHHHHHHHHHHHHHhcc
Q 021377          216 GTGFRVGLCTWCLSRTGPLYVSMFKPLAIVFSIVMDVVIVGDAFCLGSLIGAMIIVAGFYAVMWG  280 (313)
Q Consensus       216 ~s~~~~~l~~~a~~~~~a~~~s~~~~~~pv~a~i~~~l~~ge~~~~~~~~G~~lii~g~~l~~~~  280 (313)
                      ...++..+...++...+++.++++..+.-++..+++..+++|+++...+.|.++++.|..+....
T Consensus        59 ~~~~g~~~~~~Al~~ap~slv~Plg~~~lv~~~~~a~~~l~e~~~~~~~~G~~l~i~G~~liv~~  123 (300)
T PF05653_consen   59 LMVLGEILNFVALGFAPASLVAPLGALSLVFNAVLARFFLGEKLTRRDIVGCALIILGSVLIVIF  123 (300)
T ss_pred             HHhcchHHHHHHHHhhhHHHHHHHHhhhhhhHHHHhHHHhcccchHhHHhhHHHHHhhheeeEEe
Confidence            44566677788899999999999999999999999999999999999999999999999876543

>KOG4510 consensus Permease of the drug/metabolite transporter (DMT) superfamily [General function prediction only]

Probab=97.83  E-value=3.7e-06  Score=72.84  Aligned_cols=133  Identities=12%  Similarity=0.212  Sum_probs=93.1

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHhccCCCcccccchhHHHHHHHHHHHHHH
Q 021377          139 ILGGFFLAAEAFMNSAWFILQALILRKFAAVLIIMFYLFFFNTILSTAFALIVVSEPSDWKLGLDIGLVAVLYSAVIGTG  218 (313)
Q Consensus       139 ~~G~~~~l~s~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~g~~~s~  218 (313)
                      ..|..+..++ ..+-...++.++....  ||....-.++++-.+...|..++...+.    ..+..-..+++.=|+.++ 
T Consensus        37 ~~gl~l~~vs-~ff~~~~vv~t~~~e~--~p~e~a~~r~l~~mlit~pcliy~~~~v----~gp~g~R~~LiLRg~mG~-  108 (346)
T KOG4510|consen   37 NLGLLLLTVS-YFFNSCMVVSTKVLEN--DPMELASFRLLVRMLITYPCLIYYMQPV----IGPEGKRKWLILRGFMGF-  108 (346)
T ss_pred             ccCceehhhH-HHHhhHHHhhhhhhcc--ChhHhhhhhhhhehhhhheEEEEEeeee----ecCCCcEEEEEeehhhhh-
Confidence            4688888888 6666777777777665  4566665665555544444443322111    111111112233333222 


Q ss_pred             HHHHHHHHHhccCCceeeeechhhHHHHHHHHHHHHhcCccchhhHHHHHHHHHHHHHHhc
Q 021377          219 FRVGLCTWCLSRTGPLYVSMFKPLAIVFSIVMDVVIVGDAFCLGSLIGAMIIVAGFYAVMW  279 (313)
Q Consensus       219 ~~~~l~~~a~~~~~a~~~s~~~~~~pv~a~i~~~l~~ge~~~~~~~~G~~lii~g~~l~~~  279 (313)
                      .+.++.++++++.+-+.++.+.+..|+++++++|++++|+.+....+|..+.+.|+.++.+
T Consensus       109 tgvmlmyya~~~mslaDA~vItFssPvft~ifaw~~LkE~~t~~eaL~s~itl~GVVLIvR  169 (346)
T KOG4510|consen  109 TGVMLMYYALMYMSLADAVVITFSSPVFTIIFAWAFLKEPFTKFEALGSLITLLGVVLIVR  169 (346)
T ss_pred             hHHHHHHHHHhhcchhheEEEEecChHHHHHHHHHHHcCCCcHHHHHHHHHhhheEEEEec
Confidence            5667778999999999999999999999999999999999999999999999999988754

>PRK02971 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF; Provisional

Probab=97.81  E-value=6.2e-05  Score=59.42  Aligned_cols=69  Identities=20%  Similarity=0.353  Sum_probs=63.3

Q ss_pred             HHHHHHHH-HHHHHHHHHhccccChhhHhHhhhhhHHHHHHHHHH--HhhhcccccccccCcchhhHHhhhhhhhhhe
Q 021377           36 FFLLSVFG-CSSQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAII--FRLEKLNWENKSSQAKSLGTFASIGGAFVVT  110 (313)
Q Consensus        36 ~~~~g~~~-~~~~~~~~~al~~~~~~~a~ii~~~~P~~~~l~a~~--~~~E~~~~~~~~~~~~~~g~~l~~~Gv~ll~  110 (313)
                      .+..|+.. .+++.++..++++.+.+.+..+.+..+.++.+.++.  +++|++++.      +++|+++.++|+.++.
T Consensus        50 ~i~lgl~~~~la~~~w~~aL~~~~ls~Ayp~~sl~~~~v~~~~~~~~~~~E~ls~~------~~iGi~lIi~GV~lv~  121 (129)
T PRK02971         50 AVLLGLAGYALSMLCWLKALRYLPLSRAYPLLSLSYALVYLAAMLLPWFNETFSLK------KTLGVACIMLGVWLIN  121 (129)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHH------HHHHHHHHHHHHHHhc
Confidence            46678888 999999999999999999999999999888888885  899999999      9999999999999985

>PRK10650 multidrug efflux system protein MdtI; Provisional

Probab=97.79  E-value=0.00034  Score=53.37  Aligned_cols=63  Identities=10%  Similarity=0.185  Sum_probs=55.1

Q ss_pred             HHHHHHHHHHHHHhccCCceee-eechhhHHHHHHHHHHHHhcCccchhhHHHHHHHHHHHHHH
Q 021377          215 IGTGFRVGLCTWCLSRTGPLYV-SMFKPLAIVFSIVMDVVIVGDAFCLGSLIGAMIIVAGFYAV  277 (313)
Q Consensus       215 ~~s~~~~~l~~~a~~~~~a~~~-s~~~~~~pv~a~i~~~l~~ge~~~~~~~~G~~lii~g~~l~  277 (313)
                      ++-++++.+...++|+++...+ +...-+-.+.+.+.+++++||++++.+++|+.+++.|+...
T Consensus        43 ~~~~~sf~~Ls~al~~lpvgvAYAvW~GiG~v~~~~ig~~~f~e~~~~~~~~gi~lIi~GVi~l  106 (109)
T PRK10650         43 AAVLAAFSALSQAVKGIDLSVAYALWGGFGIAATLAAGWILFGQRLNRKGWIGLVLLLAGMVMI  106 (109)
T ss_pred             HHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHh
Confidence            3556889999999999998877 55666778888999999999999999999999999999875

>COG2076 EmrE Membrane transporters of cations and cationic drugs [Inorganic ion transport and metabolism]

Probab=97.75  E-value=0.00027  Score=53.21  Aligned_cols=65  Identities=23%  Similarity=0.401  Sum_probs=55.8

Q ss_pred             HHHHHHHHHHHHhccCCceee-eechhhHHHHHHHHHHHHhcCccchhhHHHHHHHHHHHHHHhcc
Q 021377          216 GTGFRVGLCTWCLSRTGPLYV-SMFKPLAIVFSIVMDVVIVGDAFCLGSLIGAMIIVAGFYAVMWG  280 (313)
Q Consensus       216 ~s~~~~~l~~~a~~~~~a~~~-s~~~~~~pv~a~i~~~l~~ge~~~~~~~~G~~lii~g~~l~~~~  280 (313)
                      +-.++|.+..+++++++...+ +...-+-.+.+.+.+++++||++++.+++|..++++|+......
T Consensus        39 ~~~~sf~~Ls~alk~ipvgvAYAiW~GiG~v~~~l~g~~~f~E~l~~~~~~gl~LiiaGvi~Lk~~  104 (106)
T COG2076          39 GYGLSFYLLSLALKTIPLGVAYAIWTGIGIVGTALVGVLLFGESLSLIKLLGLALILAGVIGLKLG  104 (106)
T ss_pred             HHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHhcCCcCCHHHHHHHHHHHHHHHHhhhc
Confidence            456788888888888887776 66677778889999999999999999999999999999887654

>PRK11431 multidrug efflux system protein; Provisional

Probab=97.65  E-value=0.00057  Score=51.86  Aligned_cols=65  Identities=17%  Similarity=0.315  Sum_probs=56.2

Q ss_pred             HHHHHHHHHHHHHHhccCCceee-eechhhHHHHHHHHHHHHhcCccchhhHHHHHHHHHHHHHHh
Q 021377          214 VIGTGFRVGLCTWCLSRTGPLYV-SMFKPLAIVFSIVMDVVIVGDAFCLGSLIGAMIIVAGFYAVM  278 (313)
Q Consensus       214 ~~~s~~~~~l~~~a~~~~~a~~~-s~~~~~~pv~a~i~~~l~~ge~~~~~~~~G~~lii~g~~l~~  278 (313)
                      +++-++++.+...++|+.+...+ +...-+-.+.+.+.+++++||++++.+++|..+++.|+....
T Consensus        36 i~~~~~sf~~Ls~al~~ip~gvaYAvW~GiG~v~~~lig~~~f~e~~~~~~~~gi~lIi~GVv~l~  101 (105)
T PRK11431         36 VTAMIVSMALLAWAMKSLPVGTAYAVWTGIGAVGAAITGIVLLGESASPARLLSLALIVAGIIGLK  101 (105)
T ss_pred             HHHHHHHHHHHHHHHhhCCcHhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhhh
Confidence            34567888999999999888877 566667888899999999999999999999999999998864

>PF03151 TPT: Triose-phosphate Transporter family; InterPro: IPR004853 This family consists entirely of aligned regions from Drosophila melanogaster proteins

Probab=97.63  E-value=0.00012  Score=59.41  Aligned_cols=98  Identities=18%  Similarity=0.311  Sum_probs=78.5

Q ss_pred             ccchhhhcchhhhhhcCCCCCCCC----C-----CC--CHHHHHHHHHHHHHHHHHHHHHHHhccccChhhHhHhhhhhH
Q 021377            2 SSLSILMPSPVSFFFSVPSYSTER----P-----QL--TFSILCSFFLLSVFGCSSQIFSFVGIQYSSPTLSTAMLNLIP   70 (313)
Q Consensus         2 ~~~~~l~l~~~~~~~~~~~~~~~~----~-----~~--~~~~~~~~~~~g~~~~~~~~~~~~al~~~~~~~a~ii~~~~P   70 (313)
                      +..+.++++|..+..    ++.+.    .     +.  ..+.+..++..|+++...+.+.+..++++++...+++...-.
T Consensus        43 ~~~s~~~l~~~~~~~----e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~f~~i~~tS~lt~~v~~~~K~  118 (153)
T PF03151_consen   43 SPISFIILLPLAFLL----EGPQLSSFFSEIFGEELSSDPNFIFLLILSGLLAFLYNLSSFLLIKLTSPLTYSVLGNVKR  118 (153)
T ss_pred             HHHHHHHHHHHHHHH----hhhhhhhHHHHhhhhhhcchHHHHHHHHHHHHHHHHHHHHHHHHhhhcChhHHHHHHHHHH
Confidence            445667777776665    43321    0     00  224456666777777999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhhcccccccccCcchhhHHhhhhhhhhh
Q 021377           71 AFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVV  109 (313)
Q Consensus        71 ~~~~l~a~~~~~E~~~~~~~~~~~~~~g~~l~~~Gv~ll  109 (313)
                      +.+.++++++++|+++..      ++.|+.+++.|+++-
T Consensus       119 ~~~i~~s~~~f~~~~t~~------~~~G~~l~~~G~~~Y  151 (153)
T PF03151_consen  119 ILVILLSVIFFGEPITPL------QIIGIVLALVGVLLY  151 (153)
T ss_pred             HHHHHHHhhhcCCcCCHH------HHHHHHHHHHHHhee
Confidence            999999999999999999      999999999998763

O49724 from SWISSPROT contains three repeats of this region. In other proteins, the aligned region is located towards the C terminus. The function of the aligned region is unknown.

>PF04657 DUF606: Protein of unknown function, DUF606; InterPro: IPR006750 This family contains uncharacterised bacterial proteins

Probab=97.62  E-value=0.0012  Score=52.75  Aligned_cols=131  Identities=15%  Similarity=0.136  Sum_probs=95.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHhccCCCcccccchhHHHHHHHHHHHHHHHHH
Q 021377          142 GFFLAAEAFMNSAWFILQALILRKFAAVLIIMFYLFFFNTILSTAFALIVVSEPSDWKLGLDIGLVAVLYSAVIGTGFRV  221 (313)
Q Consensus       142 ~~~~l~s~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~g~~~s~~~~  221 (313)
                      .++++++.++-++...++.++.++..+|..-++..+..|.+.......+..++  +........|+..+ -|+ ...+--
T Consensus         3 ~lla~~aG~~i~~q~~~N~~L~~~~gs~~~as~i~~~~G~i~~~i~~~~~~~~--~~~~~~~~p~w~~l-GG~-lG~~~V   78 (138)
T PF04657_consen    3 ILLALLAGALIALQAAFNGQLGKALGSPLVASFISFGVGFILLLIILLITGRP--SLASLSSVPWWAYL-GGL-LGVFFV   78 (138)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHhccc--ccchhccCChHHhc-cHH-HHHHHH
Confidence            57888899999999999999888874599999999999999988887766542  22211122333322 444 334555


Q ss_pred             HHHHHHhccCCceeeeechhh-HHHHHHHHHHH----HhcCccchhhHHHHHHHHHHHHH
Q 021377          222 GLCTWCLSRTGPLYVSMFKPL-AIVFSIVMDVV----IVGDAFCLGSLIGAMIIVAGFYA  276 (313)
Q Consensus       222 ~l~~~a~~~~~a~~~s~~~~~-~pv~a~i~~~l----~~ge~~~~~~~~G~~lii~g~~l  276 (313)
                      .+....++++|+......... |-+.+++++.+    .-++++++.+++|.++++.|+.+
T Consensus        79 ~~~~~~vp~lG~~~~~~l~~~GQl~~sl~iD~fG~fg~~~~~~~~~r~lG~~l~i~Gv~L  138 (138)
T PF04657_consen   79 LSNIILVPRLGAALTTILIVAGQLIASLLIDHFGLFGAPKRPFSLRRILGLALMIAGVIL  138 (138)
T ss_pred             HHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHccccCCCCCCCCHHHHHHHHHHHHHHhC
Confidence            667788899998887655544 77777888875    24468999999999999999863

>PF06800 Sugar_transport: Sugar transport protein; InterPro: IPR010651 This is a family of bacterial sugar transporters approximately 300 residues long

Probab=97.50  E-value=0.0012  Score=58.51  Aligned_cols=80  Identities=13%  Similarity=0.108  Sum_probs=64.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhccCCceeeeech-hhHHHHHHHHHHHHhcCccchhhHH----HHHHHHHHHHHHhc
Q 021377          205 GLVAVLYSAVIGTGFRVGLCTWCLSRTGPLYVSMFK-PLAIVFSIVMDVVIVGDAFCLGSLI----GAMIIVAGFYAVMW  279 (313)
Q Consensus       205 ~~~~ll~~g~~~s~~~~~l~~~a~~~~~a~~~s~~~-~~~pv~a~i~~~l~~ge~~~~~~~~----G~~lii~g~~l~~~  279 (313)
                      .+..-+..|+ .=.+++..+++++++.|.+++-++. -++-+.+.++++++|||+-+..+++    +.+++++|+++..+
T Consensus        44 ~~~~~~lsG~-~W~iGq~~qf~s~~~~GVS~tmPiStg~QLvg~sl~gv~~fgEW~~~~~~~~G~~Al~liiiGv~lts~  122 (269)
T PF06800_consen   44 SFIVAFLSGA-FWAIGQIGQFKSFKKIGVSKTMPISTGLQLVGTSLIGVLFFGEWTTTTQKIIGFLALVLIIIGVILTSY  122 (269)
T ss_pred             HHHHHHHHHH-HHHHHHHHHHHHHHHhcceeeeccchhHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHHHHHhcc
Confidence            5555666777 4559999999999999999999887 5677789999999999998876654    67778899998877


Q ss_pred             cccccc
Q 021377          280 GKSKEE  285 (313)
Q Consensus       280 ~~~~~~  285 (313)
                      .+++++
T Consensus       123 ~~~~~~  128 (269)
T PF06800_consen  123 QDKKSD  128 (269)
T ss_pred             cccccc
Confidence            666544

Members include glucose uptake proteins [], ribose transport proteins, and several putative and hypothetical membrane proteins probably involved in sugar transport across bacterial membranes.; GO: 0015144 carbohydrate transmembrane transporter activity, 0034219 carbohydrate transmembrane transport, 0016021 integral to membrane

>PF00893 Multi_Drug_Res: Small Multidrug Resistance protein; InterPro: IPR000390 Members of this family which have been characterised, belong to the small multidrug resistance (Smr) protein family and are integral membrane proteins

Probab=97.41  E-value=0.001  Score=49.45  Aligned_cols=56  Identities=20%  Similarity=0.351  Sum_probs=34.9

Q ss_pred             HHHHHHHHHHHHHhccCCceee-eechhhHHHHHHHHHHHHhcCccchhhHHHHHHH
Q 021377          215 IGTGFRVGLCTWCLSRTGPLYV-SMFKPLAIVFSIVMDVVIVGDAFCLGSLIGAMII  270 (313)
Q Consensus       215 ~~s~~~~~l~~~a~~~~~a~~~-s~~~~~~pv~a~i~~~l~~ge~~~~~~~~G~~li  270 (313)
                      .+-++++.++.+++|+.+.+.+ ....-+..+.+.+.+++++||++++.+++|..+|
T Consensus        37 ~~~~~s~~~l~~al~~lp~~vaYavw~g~g~v~~~~~~~~~f~E~~s~~~~~gi~lI   93 (93)
T PF00893_consen   37 VGYGLSFYFLSLALKKLPLSVAYAVWTGLGIVGVTLVGVFFFGESLSLSKWLGIGLI   93 (93)
T ss_dssp             HHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH--------HHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHhheeeC
Confidence            3667889999999999999998 4455688999999999999999999999999875

They confer resistance to a wide range of toxic compounds by removing them for the cells. The efflux is coupled to an influx of protons. An example is Escherichia coli mvrC P23895 from SWISSPROT which prevents the incorporation of methyl viologen into cells [] and is involved in ethidium bromide efflux [].; GO: 0016021 integral to membrane; PDB: 2I68_A.

>PRK10650 multidrug efflux system protein MdtI; Provisional

Probab=97.36  E-value=0.00067  Score=51.79  Aligned_cols=60  Identities=12%  Similarity=0.034  Sum_probs=55.7

Q ss_pred             HHHHHHHHHhccccChhhH-hHhhhhhHHHHHHHHHHHhhhcccccccccCcchhhHHhhhhhhhhh
Q 021377           44 CSSQIFSFVGIQYSSPTLS-TAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVV  109 (313)
Q Consensus        44 ~~~~~~~~~al~~~~~~~a-~ii~~~~P~~~~l~a~~~~~E~~~~~~~~~~~~~~g~~l~~~Gv~ll  109 (313)
                      ..+++++..++++.|.+.+ ++....--+.+.+.+.+++||++++.      +++|+.+.+.|++.+
T Consensus        46 ~~sf~~Ls~al~~lpvgvAYAvW~GiG~v~~~~ig~~~f~e~~~~~------~~~gi~lIi~GVi~l  106 (109)
T PRK10650         46 LAAFSALSQAVKGIDLSVAYALWGGFGIAATLAAGWILFGQRLNRK------GWIGLVLLLAGMVMI  106 (109)
T ss_pred             HHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHcCCCCCHH------HHHHHHHHHHHHHHh
Confidence            8899999999999999998 56677888999999999999999999      999999999999886

>PRK10452 multidrug efflux system protein MdtJ; Provisional

Probab=97.28  E-value=0.00084  Score=52.17  Aligned_cols=66  Identities=17%  Similarity=0.178  Sum_probs=58.5

Q ss_pred             HHHHH-HHHHHHHHHhccccChhhHhHh-hhhhHHHHHHHHHHHhhhcccccccccCcchhhHHhhhhhhhhhe
Q 021377           39 LSVFG-CSSQIFSFVGIQYSSPTLSTAM-LNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVT  110 (313)
Q Consensus        39 ~g~~~-~~~~~~~~~al~~~~~~~a~ii-~~~~P~~~~l~a~~~~~E~~~~~~~~~~~~~~g~~l~~~Gv~ll~  110 (313)
                      ..+.. ..+++++..++++.|.+.+=.+ ....-+.+.+++.++++|++++.      +++|+.+.++|++.+-
T Consensus        35 ~~i~~~~~sf~~ls~al~~lplsiAYavw~GiG~v~~~~ig~~~f~E~~s~~------~~~gi~lIi~GVi~l~  102 (120)
T PRK10452         35 LMLVMISLSYIFLSFAVKKIALGVAYALWEGIGILFITLFSVLLFDESLSLM------KIAGLTTLVAGIVLIK  102 (120)
T ss_pred             HHHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHH------HHHHHHHHHHHHHHhh
Confidence            34445 8999999999999999998555 56888999999999999999999      9999999999999884

>PRK11431 multidrug efflux system protein; Provisional

Probab=97.26  E-value=0.0011  Score=50.34  Aligned_cols=63  Identities=10%  Similarity=-0.030  Sum_probs=57.4

Q ss_pred             HHH-HHHHHHHHHhccccChhhH-hHhhhhhHHHHHHHHHHHhhhcccccccccCcchhhHHhhhhhhhhh
Q 021377           41 VFG-CSSQIFSFVGIQYSSPTLS-TAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVV  109 (313)
Q Consensus        41 ~~~-~~~~~~~~~al~~~~~~~a-~ii~~~~P~~~~l~a~~~~~E~~~~~~~~~~~~~~g~~l~~~Gv~ll  109 (313)
                      +.+ ..+++++..++++.|.+.+ ++....--+.+.+++.+++||++++.      +++|+.+.+.|++.+
T Consensus        36 i~~~~~sf~~Ls~al~~ip~gvaYAvW~GiG~v~~~lig~~~f~e~~~~~------~~~gi~lIi~GVv~l  100 (105)
T PRK11431         36 VTAMIVSMALLAWAMKSLPVGTAYAVWTGIGAVGAAITGIVLLGESASPA------RLLSLALIVAGIIGL  100 (105)
T ss_pred             HHHHHHHHHHHHHHHhhCCcHhHHHHHHHHHHHHHHHHHHHHhCCCCCHH------HHHHHHHHHHHHHhh
Confidence            444 8899999999999999998 56677888999999999999999999      999999999999987

>COG2076 EmrE Membrane transporters of cations and cationic drugs [Inorganic ion transport and metabolism]

Probab=97.26  E-value=0.0008  Score=50.68  Aligned_cols=64  Identities=14%  Similarity=0.101  Sum_probs=58.2

Q ss_pred             HHHH-HHHHHHHHHhccccChhhH-hHhhhhhHHHHHHHHHHHhhhcccccccccCcchhhHHhhhhhhhhh
Q 021377           40 SVFG-CSSQIFSFVGIQYSSPTLS-TAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVV  109 (313)
Q Consensus        40 g~~~-~~~~~~~~~al~~~~~~~a-~ii~~~~P~~~~l~a~~~~~E~~~~~~~~~~~~~~g~~l~~~Gv~ll  109 (313)
                      .+.+ ..++.++..+++++|.+.+ ++....--+.+++.++++++|+.++.      +++|+.+.+.|++.+
T Consensus        36 ~~v~~~~sf~~Ls~alk~ipvgvAYAiW~GiG~v~~~l~g~~~f~E~l~~~------~~~gl~LiiaGvi~L  101 (106)
T COG2076          36 TIVGYGLSFYLLSLALKTIPLGVAYAIWTGIGIVGTALVGVLLFGESLSLI------KLLGLALILAGVIGL  101 (106)
T ss_pred             HHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHhcCCcCCHH------HHHHHHHHHHHHHHh
Confidence            3444 8899999999999999998 67778899999999999999999999      999999999999987

>PRK09541 emrE multidrug efflux protein; Reviewed

Probab=97.23  E-value=0.0012  Score=50.56  Aligned_cols=65  Identities=15%  Similarity=0.234  Sum_probs=57.9

Q ss_pred             HHHH-HHHHHHHHHhccccChhhHhHh-hhhhHHHHHHHHHHHhhhcccccccccCcchhhHHhhhhhhhhhe
Q 021377           40 SVFG-CSSQIFSFVGIQYSSPTLSTAM-LNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVT  110 (313)
Q Consensus        40 g~~~-~~~~~~~~~al~~~~~~~a~ii-~~~~P~~~~l~a~~~~~E~~~~~~~~~~~~~~g~~l~~~Gv~ll~  110 (313)
                      .+.. ..+++++..++++.|.+.+=.+ ....-+.+.+++++++||++++.      ++.|+.+.++|++.+-
T Consensus        36 ~~~~~~~sf~~l~~al~~ipl~iAYavw~GlG~v~~~l~g~~~f~e~~~~~------~~~gi~lIi~GVi~l~  102 (110)
T PRK09541         36 TIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLP------AIIGMMLICAGVLVIN  102 (110)
T ss_pred             HHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHH------HHHHHHHHHHHHHHHh
Confidence            4555 8889999999999999998544 66888999999999999999999      9999999999999984

>COG3238 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.10  E-value=0.0096  Score=47.87  Aligned_cols=138  Identities=14%  Similarity=0.141  Sum_probs=91.0

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHhccCCCcccccchhHHHHHHHHHHHHHHH
Q 021377          140 LGGFFLAAEAFMNSAWFILQALILRKFAAVLIIMFYLFFFNTILSTAFALIVVSEPSDWKLGLDIGLVAVLYSAVIGTGF  219 (313)
Q Consensus       140 ~G~~~~l~s~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~g~~~s~~  219 (313)
                      ...++++++.++..+..-++.++.+...+|..-.+..+.+|++.+..+.++.++ ..++....+..|+..+ -|+++. +
T Consensus         5 l~ll~~i~aG~~l~~Q~~iN~qL~~~~~spl~As~isf~vGt~~L~~l~l~~~~-~~~~a~~~~~pwW~~~-GG~lGa-~   81 (150)
T COG3238           5 LYLLFAILAGALLPLQAAINGRLARYLGSPLLASLISFLVGTVLLLILLLIKQG-HPGLAAVASAPWWAWI-GGLLGA-I   81 (150)
T ss_pred             HHHHHHHHHhhhhhhHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHhcC-CCchhhccCCchHHHH-ccchhh-h
Confidence            567888999999999999999988887678999999999999999888877443 2223211121232222 222222 1


Q ss_pred             HHHHHHHHhccCCceee-eechhhHHHHHHHHHHHHhc----CccchhhHHHHHHHHHHHHHHhcc
Q 021377          220 RVGLCTWCLSRTGPLYV-SMFKPLAIVFSIVMDVVIVG----DAFCLGSLIGAMIIVAGFYAVMWG  280 (313)
Q Consensus       220 ~~~l~~~a~~~~~a~~~-s~~~~~~pv~a~i~~~l~~g----e~~~~~~~~G~~lii~g~~l~~~~  280 (313)
                      --..-....++.+++.. .....-|-+.+++.+-+=+.    .+++...++|++++++|+++..+.
T Consensus        82 ~vt~s~~l~p~lGa~~t~~l~i~gQli~glliD~fG~~g~~~~~~~~~r~lgi~L~l~gil~~~~~  147 (150)
T COG3238          82 FVTSSILLAPRLGAATTIALVIAGQLIMGLLIDHFGWFGVPKRPLNLPRILGILLVLAGILLARRF  147 (150)
T ss_pred             hhhhhHHhccchhHHHHHHHHHHHHHHHHHHHHhhcccCCCcCCCCHHHHHHHHHHHHHHHHhccc
Confidence            11222344566665544 44555577777777765443    578999999999999996665544

>PRK13499 rhamnose-proton symporter; Provisional

Probab=97.06  E-value=0.0049  Score=56.70  Aligned_cols=137  Identities=12%  Similarity=0.076  Sum_probs=90.4

Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHHH----HHhccCC-CcccccchhHHHHHHHH
Q 021377          138 WILGGFFLAAEAFMNSAWFILQALILRKFAAVLIIMFYLFFFNTILSTAFA----LIVVSEP-SDWKLGLDIGLVAVLYS  212 (313)
Q Consensus       138 ~~~G~~~~l~s~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~-~~~~~~~~~~~~~ll~~  212 (313)
                      ...|+++.+++++||+-+.+-.|+ .++.  +.... |- ..+....+...    .+..++. ......+...+..-+..
T Consensus         5 ~~~G~~~~~i~~~~~GS~~~p~K~-~k~w--~wE~~-W~-v~gi~~wl~~~~~~g~~~~~~f~~~~~~~~~~~~~~~~l~   79 (345)
T PRK13499          5 IILGIIWHLIGGASSGSFYAPFKK-VKKW--SWETM-WS-VGGIFSWLILPWLIAALLLPDFWAYYSSFSGSTLLPVFLF   79 (345)
T ss_pred             hHHHHHHHHHHHHHhhcccccccc-cCCC--chhHH-HH-HHHHHHHHHHHHHHHHHHhhhHHHHHHhcCHHHHHHHHHH
Confidence            467999999999999999999988 4544  22222 33 22221111111    1111111 12221223345555556


Q ss_pred             HHHHHHHHHHHHHHHhccCCceeeeec-hhhHHHHHHHHHHHHhcCcc---c----hhhHHHHHHHHHHHHHHhcc
Q 021377          213 AVIGTGFRVGLCTWCLSRTGPLYVSMF-KPLAIVFSIVMDVVIVGDAF---C----LGSLIGAMIIVAGFYAVMWG  280 (313)
Q Consensus       213 g~~~s~~~~~l~~~a~~~~~a~~~s~~-~~~~pv~a~i~~~l~~ge~~---~----~~~~~G~~lii~g~~l~~~~  280 (313)
                      |+ .=.+++..+..++++.|.+..-++ .-++-+.+.+++.+++||..   +    ....+|.+++++|+.+..+.
T Consensus        80 G~-~W~iG~i~~~~s~~~iGvS~~~pIs~Gl~lv~gtL~~~i~~gew~~~~~t~~g~~~~~gv~liliGi~l~s~A  154 (345)
T PRK13499         80 GA-LWGIGGITYGLTMRYLGMSLGIGIAIGITLIVGTLMPPIINGNFDVLLATNGGRMTLLGVLVALIGVAIVGRA  154 (345)
T ss_pred             HH-HHHhhhhhHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHccccccccccchHHHHHHHHHHHHHHHHHHHHh
Confidence            66 455999999999999999988655 45788999999999999865   2    24667899999999998873

>PF04142 Nuc_sug_transp: Nucleotide-sugar transporter; InterPro: IPR007271 This family of membrane proteins transport nucleotide sugars from the cytoplasm into golgi vesicles

Probab=96.83  E-value=0.0035  Score=55.13  Aligned_cols=67  Identities=18%  Similarity=0.279  Sum_probs=59.6

Q ss_pred             HHHHHHHHHHhccCCceeeeechhhHHHHHHHHHHHHhcCccchhhHHHHHHHHHHHHHHhcccccc
Q 021377          218 GFRVGLCTWCLSRTGPLYVSMFKPLAIVFSIVMDVVIVGDAFCLGSLIGAMIIVAGFYAVMWGKSKE  284 (313)
Q Consensus       218 ~~~~~l~~~a~~~~~a~~~s~~~~~~pv~a~i~~~l~~ge~~~~~~~~G~~lii~g~~l~~~~~~~~  284 (313)
                      .+.-.+.+.++++.+|+...+...+..++++++++++++.+++..||.+..++++|+.+........
T Consensus        28 ~~qn~L~~~al~~ld~~t~qvl~q~kIl~TAl~s~~~L~r~ls~~qW~aL~lL~~Gv~lv~~~~~~~   94 (244)
T PF04142_consen   28 AIQNNLQFVALSYLDPSTFQVLSQSKILFTALFSVLLLKRRLSRRQWLALFLLVAGVVLVQLSSSQS   94 (244)
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHhhHHHHHHHHHHHHHHcccchhhHHHHHHHHHHHheeecCCccc
Confidence            3555677789999999999999999999999999999999999999999999999999987655443

P78382 from SWISSPROT transports CMP-sialic acid, P78381 from SWISSPROT transports UDP-galactose and Q9Y2D2 from SWISSPROT transports UDP-GlcNAc. This family has some but not complete overlap with the UDP-galactose transporter family IPR004689 from INTERPRO.; GO: 0005351 sugar:hydrogen symporter activity, 0008643 carbohydrate transport, 0000139 Golgi membrane, 0016021 integral to membrane

>COG5006 rhtA Threonine/homoserine efflux transporter [Amino acid transport and metabolism]

Probab=96.68  E-value=0.0052  Score=53.30  Aligned_cols=94  Identities=17%  Similarity=0.155  Sum_probs=76.3

Q ss_pred             cchhhhcchhhhhhcCCCCCCCCCCCCHHHHHHHHHHHHHH-HHHHHHHHHhccccChhhHhHhhhhhHHHHHHHHHHHh
Q 021377            3 SLSILMPSPVSFFFSVPSYSTERPQLTFSILCSFFLLSVFG-CSSQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFR   81 (313)
Q Consensus         3 ~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~al~~~~~~~a~ii~~~~P~~~~l~a~~~~   81 (313)
                      .+++++.+|+..-.    ...  .-.++.-....+..|+++ .+.+.+--.++++.|....+++.++.|.+.++.+++++
T Consensus       185 ~vAaviv~Pig~~~----ag~--~l~~p~ll~laLgvavlSSalPYsLEmiAL~rlp~~~F~~LlSLePa~aAl~G~i~L  258 (292)
T COG5006         185 LVAALIVLPIGAAQ----AGP--ALFSPSLLPLALGVAVLSSALPYSLEMIALRRLPARTFGTLLSLEPALAALSGLIFL  258 (292)
T ss_pred             HHHHHHHhhhhhhh----cch--hhcChHHHHHHHHHHHHhcccchHHHHHHHhhCChhHHHHHHHhhHHHHHHHHHHHh
Confidence            35667777876543    221  113455566677889999 99999999999999999999999999999999999999


Q ss_pred             hhcccccccccCcchhhHHhhhhhhhh
Q 021377           82 LEKLNWENKSSQAKSLGTFASIGGAFV  108 (313)
Q Consensus        82 ~E~~~~~~~~~~~~~~g~~l~~~Gv~l  108 (313)
                      +|++++.      ||.++...+.+..=
T Consensus       259 ~e~ls~~------qwlaI~~ViaAsaG  279 (292)
T COG5006         259 GETLTLI------QWLAIAAVIAASAG  279 (292)
T ss_pred             cCCCCHH------HHHHHHHHHHHHhc
Confidence            9999999      99998887776653

>PF00893 Multi_Drug_Res: Small Multidrug Resistance protein; InterPro: IPR000390 Members of this family which have been characterised, belong to the small multidrug resistance (Smr) protein family and are integral membrane proteins

Probab=96.46  E-value=0.009  Score=44.31  Aligned_cols=56  Identities=20%  Similarity=0.125  Sum_probs=34.1

Q ss_pred             HHHH-HHHHHHHHHhccccChhhH-hHhhhhhHHHHHHHHHHHhhhcccccccccCcchhhHHh
Q 021377           40 SVFG-CSSQIFSFVGIQYSSPTLS-TAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFA  101 (313)
Q Consensus        40 g~~~-~~~~~~~~~al~~~~~~~a-~ii~~~~P~~~~l~a~~~~~E~~~~~~~~~~~~~~g~~l  101 (313)
                      .+.. ..+++++..++++.|.+.+ .+...+..+.+.+.+.++++|++++.      ++.|+.+
T Consensus        35 ~~~~~~~s~~~l~~al~~lp~~vaYavw~g~g~v~~~~~~~~~f~E~~s~~------~~~gi~l   92 (93)
T PF00893_consen   35 AVVGYGLSFYFLSLALKKLPLSVAYAVWTGLGIVGVTLVGVFFFGESLSLS------KWLGIGL   92 (93)
T ss_dssp             HHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH--------------HHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhCCCCCHH------HHhheee
Confidence            3334 8888999999999999999 55567999999999999999999999      9999875

They confer resistance to a wide range of toxic compounds by removing them for the cells. The efflux is coupled to an influx of protons. An example is Escherichia coli mvrC P23895 from SWISSPROT which prevents the incorporation of methyl viologen into cells [] and is involved in ethidium bromide efflux [].; GO: 0016021 integral to membrane; PDB: 2I68_A.

>COG4975 GlcU Putative glucose uptake permease [Carbohydrate transport and metabolism]

Probab=96.45  E-value=0.0015  Score=56.27  Aligned_cols=132  Identities=10%  Similarity=0.026  Sum_probs=87.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHhccCCCcccccchhHHHHHHHHHHHHHHHH
Q 021377          141 GGFFLAAEAFMNSAWFILQALILRKFAAVLIIMFYLFFFNTILSTAFALIVVSEPSDWKLGLDIGLVAVLYSAVIGTGFR  220 (313)
Q Consensus       141 G~~~~l~s~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~g~~~s~~~  220 (313)
                      +.+.+++=++.|+......-|...   +|..-+.- +.+|+++.....+++..+...+     ..+..-+..|.+ =.++
T Consensus         3 ~~liaL~P~l~WGsip~v~~k~GG---~p~qQ~lG-tT~GALifaiiv~~~~~p~~T~-----~~~iv~~isG~~-Ws~G   72 (288)
T COG4975           3 DLLIALLPALGWGSIPLVANKFGG---KPYQQTLG-TTLGALIFAIIVFLFVSPELTL-----TIFIVGFISGAF-WSFG   72 (288)
T ss_pred             hHHHHHHHHHHhcccceeeeecCC---ChhHhhhh-ccHHHHHHHHHHheeecCccch-----hhHHHHHHhhhH-hhhh
Confidence            567888899999987776654422   24443333 3444444444433332221111     134444455554 3489


Q ss_pred             HHHHHHHhccCCceeeeechh-hHHHHHHHHHHHHhcCccchhhHH----HHHHHHHHHHHHhcccc
Q 021377          221 VGLCTWCLSRTGPLYVSMFKP-LAIVFSIVMDVVIVGDAFCLGSLI----GAMIIVAGFYAVMWGKS  282 (313)
Q Consensus       221 ~~l~~~a~~~~~a~~~s~~~~-~~pv~a~i~~~l~~ge~~~~~~~~----G~~lii~g~~l~~~~~~  282 (313)
                      +..++++++..+.+++.++.. .+-+-+.+++++.++|+.++.+.+    ..++++.|+++..++++
T Consensus        73 Q~~Qfka~~~iGVSkamPiStG~QLVg~sL~gV~~f~EW~t~~~~IlG~iAliliviG~~lTs~~~~  139 (288)
T COG4975          73 QANQFKAIQLIGVSKAMPISTGMQLVGTSLFGVFVFHEWTTPTQIILGFIALILIVIGIYLTSKQDR  139 (288)
T ss_pred             hhhhhhheeeeeeeccccccchhhHhhceeeeEEEEeccCcchhHHHHHHHHHHHHHhheEeeeecc
Confidence            999999999999999998765 678888999999999999998763    45666788887666554

>PF10639 UPF0546: Uncharacterised protein family UPF0546; InterPro: IPR018908 This family of proteins has no known function

Probab=96.25  E-value=0.014  Score=44.74  Aligned_cols=109  Identities=11%  Similarity=0.018  Sum_probs=74.4

Q ss_pred             HHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHhccCCCcccccchhHHHHHHHHHHHHHHHHHHHHHH
Q 021377          147 AEAFMNSAWFILQALILRKFAAVLIIMFYLFFFNTILSTAFALIVVSEPSDWKLGLDIGLVAVLYSAVIGTGFRVGLCTW  226 (313)
Q Consensus       147 ~s~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~g~~~s~~~~~l~~~  226 (313)
                      +-+++|+..+-+.||..+... +..-.. +..-... .    ++.     +|+     .     ...+.....+...|++
T Consensus         3 ~Vg~~WG~Tnpfik~g~~~~~-~~~~~~-~~~~~~~-~----Ll~-----n~~-----y-----~ipf~lNq~GSv~f~~   60 (113)
T PF10639_consen    3 LVGILWGCTNPFIKRGSSGLE-KVKASL-QLLQEIK-F----LLL-----NPK-----Y-----IIPFLLNQSGSVLFFL   60 (113)
T ss_pred             eehHHhcCchHHHHHHHhhcC-CccchH-HHHHHHH-H----HHH-----hHH-----H-----HHHHHHHHHHHHHHHH
Confidence            346789999999998876653 221111 2111111 1    100     111     1     1233344567788999


Q ss_pred             HhccCCceeeeech-hhHHHHHHHHHHHHhcCccchhhHHHHHHHHHHHHHH
Q 021377          227 CLSRTGPLYVSMFK-PLAIVFSIVMDVVIVGDAFCLGSLIGAMIIVAGFYAV  277 (313)
Q Consensus       227 a~~~~~a~~~s~~~-~~~pv~a~i~~~l~~ge~~~~~~~~G~~lii~g~~l~  277 (313)
                      .+++.+-+.+.++. .+.=+++++.++++.+|..+...++|+++++.|+.++
T Consensus        61 ~L~~~dlSlavPi~Nsl~fvfT~l~g~~lge~~~~~~~~~G~~Li~~Gv~Lc  112 (113)
T PF10639_consen   61 LLGSADLSLAVPIANSLAFVFTALTGWLLGEEVISRRTWLGMALILAGVALC  112 (113)
T ss_pred             HHhcCCceeeehHHhHHHHHHHHHHHHHhcCcccchhHHHHHHHHHcCeeee
Confidence            99999999999995 8899999999988888888889999999999998653

Many members are annotated as potential transmembrane proteins.

>PF07857 DUF1632: CEO family (DUF1632); InterPro: IPR012435 These sequences are found in hypothetical eukaryotic proteins of unknown function

Probab=95.68  E-value=0.074  Score=46.89  Aligned_cols=127  Identities=12%  Similarity=0.043  Sum_probs=65.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHhccC-CCcccccchhH-----HHHHHHHHH
Q 021377          141 GGFFLAAEAFMNSAWFILQALILRKFAAVLIIMFYLFFFNTILSTAFALIVVSE-PSDWKLGLDIG-----LVAVLYSAV  214 (313)
Q Consensus       141 G~~~~l~s~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-----~~~ll~~g~  214 (313)
                      |.+.+++++++++-..+=.||....  |++..-.+++....+...++.++.+.+ +.++.......     ...+-..=.
T Consensus         1 G~~a~~va~~~fGs~~vPvK~~~~g--Dg~~fQw~~~~~i~~~g~~v~~~~~~p~f~p~amlgG~lW~~gN~~~vpii~~   78 (254)
T PF07857_consen    1 GYIACIVAVLFFGSNFVPVKKFDTG--DGFFFQWVMCSGIFLVGLVVNLILGFPPFYPWAMLGGALWATGNILVVPIIKT   78 (254)
T ss_pred             CchhHHHHHHHhcccceeeEeccCC--CcHHHHHHHHHHHHHHHHHHHHhcCCCcceeHHHhhhhhhhcCceeehhHhhh
Confidence            5577888999999888877765433  576666555554444444444433211 11111111000     001111222


Q ss_pred             HHHHHHHHHHHHHhccCCceeeeechhhHHHHHHHHHHH-HhcCc-----cchhhHHHHHHHHHHHHHHhcccccc
Q 021377          215 IGTGFRVGLCTWCLSRTGPLYVSMFKPLAIVFSIVMDVV-IVGDA-----FCLGSLIGAMIIVAGFYAVMWGKSKE  284 (313)
Q Consensus       215 ~~s~~~~~l~~~a~~~~~a~~~s~~~~~~pv~a~i~~~l-~~ge~-----~~~~~~~G~~lii~g~~l~~~~~~~~  284 (313)
                      ++-++++.+|..               .+-+.+-..+-+ +||+.     -.+..++|++++++|..+....|.++
T Consensus        79 iGLglg~liW~s---------------~n~l~Gw~~grfGlFg~~~~~~~~~~Ln~~G~~l~~~~~~~f~fik~~~  139 (254)
T PF07857_consen   79 IGLGLGMLIWGS---------------VNCLTGWASGRFGLFGLDPQVPSSPWLNYIGVALVLVSGIIFSFIKSEE  139 (254)
T ss_pred             hhhHHHHHHHHH---------------HHHHHHHHHhhceeccccccccchhHHHHHHHHHHHHHHHheeeecCCC
Confidence            344566666632               122233232222 34432     23467899999999998887665554

The region concerned is approximately 280 residues long.

>KOG1441 consensus Glucose-6-phosphate/phosphate and phosphoenolpyruvate/phosphate antiporter [Carbohydrate transport and metabolism; Amino acid transport and metabolism]

Probab=95.67  E-value=0.0053  Score=55.77  Aligned_cols=125  Identities=17%  Similarity=0.266  Sum_probs=88.4

Q ss_pred             HHHHHHHHHHHHhh--hchhHHHHHHHHHHHHHHHHHHHHHHhccCCCcccccchhHHHHHHHHHHHHHHHHHHHHHHHh
Q 021377          151 MNSAWFILQALILR--KFAAVLIIMFYLFFFNTILSTAFALIVVSEPSDWKLGLDIGLVAVLYSAVIGTGFRVGLCTWCL  228 (313)
Q Consensus       151 ~~a~~~v~~k~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~g~~~s~~~~~l~~~a~  228 (313)
                      +....++++|+..+  ..+-|..++...+.++.+.....-.....+..+  ..+...+..++-+|++ -.++..+-+.++
T Consensus        28 ~~v~~~~~nK~il~~~~f~~p~~lt~~~~~~~~l~~~v~~~l~~~~~~~--~~~~~~~~~llpl~~~-~~~~~v~~n~Sl  104 (316)
T KOG1441|consen   28 LSVGVIILNKYILSKYGFPFPITLTMLHLFCGALALLVIKVLKLVPPSK--ISSKLPLRTLLPLGLV-FCISHVLGNVSL  104 (316)
T ss_pred             hheeeEEeeHhhhccCCCCCccHHHHHHHHHHHHHHHHHHHhcCCCCCc--cccccchHHHHHHHHH-HHHHHHhcchhh
Confidence            33344557788888  566678888887777766666554433222222  2223367777778874 458888899999


Q ss_pred             ccCCceeeeechhhHHHHHHHHHHHHhcCccchhhHHHHHHHHHHHHHHh
Q 021377          229 SRTGPLYVSMFKPLAIVFSIVMDVVIVGDAFCLGSLIGAMIIVAGFYAVM  278 (313)
Q Consensus       229 ~~~~a~~~s~~~~~~pv~a~i~~~l~~ge~~~~~~~~G~~lii~g~~l~~  278 (313)
                      ++.+.+..-..-.++|++++++++++.+|+.+...+.-...++.|+.+..
T Consensus       105 ~~v~VsF~q~iKa~~P~~tvl~~~~~~~~~~s~~~~lsL~piv~GV~ias  154 (316)
T KOG1441|consen  105 SYVPVSFYQTIKALMPPFTVLLSVLLLGKTYSSMTYLSLLPIVFGVAIAS  154 (316)
T ss_pred             hccchhHHHHHHhhcchhHHHHHHHHhCCCCcceEEEEEEEeeeeEEEee
Confidence            99999999999999999999999999999988765555555555544433

>PF06379 RhaT: L-rhamnose-proton symport protein (RhaT); InterPro: IPR004673 These proteins are members of the L-Rhamnose Symporter (RhaT) family

Probab=95.62  E-value=0.82  Score=41.81  Aligned_cols=242  Identities=15%  Similarity=0.091  Sum_probs=136.9

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHhccccChhhHh-HhhhhhHHHHHHHHHHHhhhcccc-cccccCcchhhHHhhhhh
Q 021377           28 LTFSILCSFFLLSVFGCSSQIFSFVGIQYSSPTLST-AMLNLIPAFTFVLAIIFRLEKLNW-ENKSSQAKSLGTFASIGG  105 (313)
Q Consensus        28 ~~~~~~~~~~~~g~~~~~~~~~~~~al~~~~~~~a~-ii~~~~P~~~~l~a~~~~~E~~~~-~~~~~~~~~~g~~l~~~G  105 (313)
                      .+...++..++.|++-.+....|=.+++|+..+... +...+.-++-.++-.++.++--.. .+..++..++|+++.++|
T Consensus        68 ~~~~~l~~~~l~G~lWGIGgltfGl~mryLGvSLG~sI~lGl~~~~GTlippi~~g~~~~l~~~~~g~~vL~Gv~v~LiG  147 (344)
T PF06379_consen   68 TPASTLFWTFLFGVLWGIGGLTFGLAMRYLGVSLGQSIALGLCAVFGTLIPPIFQGTFDELLATPSGQIVLLGVAVCLIG  147 (344)
T ss_pred             CChhHHHHHHHHHHHHhcchhhHhHHHHHHhHHHHHHHHHHHHHHHhhchHHHHcCcccccccCCCchhhhhHHHHHHHH
Confidence            345667777888888888888889999999888764 444455555555555554432111 123344578999999999


Q ss_pred             hhhheeecCCCCcCCCCCCCCCCccCCCCCccchhHHHHHHHHHHHHHHHHHHHHHH---h---hh-chhH----HHHHH
Q 021377          106 AFVVTFYKGPPLIGELSHSGSPRRLLLSPQLSWILGGFFLAAEAFMNSAWFILQALI---L---RK-FAAV----LIIMF  174 (313)
Q Consensus       106 v~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~s~~~~a~~~v~~k~~---~---~~-~~~~----~~~~~  174 (313)
                      ++++.. -|. ..   .++.    ..+.++++..+|.+.++++.+.-|.+++-...-   .   .+ ..+|    .....
T Consensus       148 Iai~g~-AG~-~K---e~~~----~~~~~efn~~kGl~iAv~sGv~Sa~fn~g~~ag~pi~~~a~a~G~~~l~~~l~~~v  218 (344)
T PF06379_consen  148 IAICGK-AGS-MK---EKEL----GEEAKEFNFKKGLIIAVLSGVMSACFNFGLDAGKPIHEAAVAAGVNPLYANLPVYV  218 (344)
T ss_pred             HHHHhH-HHH-hh---hhhh----ccchhhhhhhhhHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHcCCCcHHHhCchhh
Confidence            999853 111 10   0010    012345667799999999999888887744311   0   00 0011    11222


Q ss_pred             HHHHHHHHHHHHHHHHh---ccCC---Ccccccc---hhHHHHHHHHHHHHHHHHHHHHHHHhccCCce----eeeechh
Q 021377          175 YLFFFNTILSTAFALIV---VSEP---SDWKLGL---DIGLVAVLYSAVIGTGFRVGLCTWCLSRTGPL----YVSMFKP  241 (313)
Q Consensus       175 ~~~~~~~~~~~~~~~~~---~~~~---~~~~~~~---~~~~~~ll~~g~~~s~~~~~l~~~a~~~~~a~----~~s~~~~  241 (313)
                      ..+.-|.+.-+..+++.   .++.   .+.....   ...+..-+..|+ .=...+.+|..+-.+.++.    --.+.+.
T Consensus       219 vv~~GGf~tN~~yc~~~l~~~k~~s~~~d~~~~~~~~~~N~~~~aLaG~-lWy~qfffYg~G~s~lg~~~~~~sW~i~ma  297 (344)
T PF06379_consen  219 VVLWGGFITNLIYCLILLAKNKNWSWKGDYSVAKPPLLKNYLFCALAGV-LWYSQFFFYGMGESKLGASGPFSSWAIHMA  297 (344)
T ss_pred             hhhhhHHHHHHHHHHHHHhhcCCCccccccccccchhHHHHHHHHHHHH-HHHHHHHHHHHHHHHhcCccccHHHHHHHH
Confidence            33334444444444332   1222   1222111   123333334444 2335555666776776643    3356677


Q ss_pred             hHHHHHHHHHHHHhcCccc------hhhHHHHHHHHHHHHHHhcc
Q 021377          242 LAIVFSIVMDVVIVGDAFC------LGSLIGAMIIVAGFYAVMWG  280 (313)
Q Consensus       242 ~~pv~a~i~~~l~~ge~~~------~~~~~G~~lii~g~~l~~~~  280 (313)
                      +..+++-+++. +++|.=+      ...++|.++++.++.++-+.
T Consensus       298 ~~vl~snvwGl-~lkEWKg~s~kt~~vl~~G~~vlI~s~~ivG~G  341 (344)
T PF06379_consen  298 LIVLFSNVWGL-ILKEWKGASKKTIRVLVLGIAVLILSVVIVGYG  341 (344)
T ss_pred             HHHHHHHHHHH-HHHHhccCCcccHHHHHHHHHHHHHHHHHHhcc
Confidence            78888888886 5787422      23467888888887776543

This family includes two characterised members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.; GO: 0015153 rhamnose transmembrane transporter activity, 0008645 hexose transport, 0016021 integral to membrane

>PF10639 UPF0546: Uncharacterised protein family UPF0546; InterPro: IPR018908 This family of proteins has no known function

Probab=94.98  E-value=0.06  Score=41.25  Aligned_cols=64  Identities=16%  Similarity=0.188  Sum_probs=54.9

Q ss_pred             HHHH-HHHHHHHHHhccccChhhHhHhh-hhhHHHHHHHHHHHhhhcccccccccCcchhhHHhhhhhhhhh
Q 021377           40 SVFG-CSSQIFSFVGIQYSSPTLSTAML-NLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVV  109 (313)
Q Consensus        40 g~~~-~~~~~~~~~al~~~~~~~a~ii~-~~~P~~~~l~a~~~~~E~~~~~~~~~~~~~~g~~l~~~Gv~ll  109 (313)
                      .+.- -.+...|++.+...+.+.+..+. ++.=++|++.++++.+|..+++      .++|+.+...|+.+.
T Consensus        47 pf~lNq~GSv~f~~~L~~~dlSlavPi~Nsl~fvfT~l~g~~lge~~~~~~------~~~G~~Li~~Gv~Lc  112 (113)
T PF10639_consen   47 PFLLNQSGSVLFFLLLGSADLSLAVPIANSLAFVFTALTGWLLGEEVISRR------TWLGMALILAGVALC  112 (113)
T ss_pred             HHHHHHHHHHHHHHHHhcCCceeeehHHhHHHHHHHHHHHHHhcCcccchh------HHHHHHHHHcCeeee
Confidence            4444 77788899999999999999985 6777999999988888888888      999999999999764

Many members are annotated as potential transmembrane proteins.

>KOG2234 consensus Predicted UDP-galactose transporter [Carbohydrate transport and metabolism]

Probab=94.74  E-value=1.7  Score=39.92  Aligned_cols=134  Identities=14%  Similarity=0.136  Sum_probs=89.2

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHhhhch---hHHHHHHHHHHHHHHHHHHHHHHhccC-CCcc----c---ccc-----h
Q 021377          140 LGGFFLAAEAFMNSAWFILQALILRKFA---AVLIIMFYLFFFNTILSTAFALIVVSE-PSDW----K---LGL-----D  203 (313)
Q Consensus       140 ~G~~~~l~s~~~~a~~~v~~k~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~----~---~~~-----~  203 (313)
                      .=.+..+...+.++......|+..+..+   .|.+..+..=+.-.+++....+...+. ...+    +   ...     .
T Consensus        15 ~k~~~l~~~t~~~~~l~l~l~ys~~~~~~~f~~tt~v~~~Ei~Kl~~c~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~lk   94 (345)
T KOG2234|consen   15 MKYLSLIVLTAQNTALTLLLRYSRTREKPMFLPTTAVFLTEVIKLVFCLFLLLFEERKYAKKSLKSLSKEILAAPRETLK   94 (345)
T ss_pred             HHHHHHHHHHHHHhhHHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhhHHhhhhhhhcCHHHHhChHHHHH
Confidence            3456677777788888887776544331   244555555455555555554433211 0000    0   000     1


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHhccCCceeeeechhhHHHHHHHHHHHHhcCccchhhHHHHHHHHHHHHHHhc
Q 021377          204 IGLVAVLYSAVIGTGFRVGLCTWCLSRTGPLYVSMFKPLAIVFSIVMDVVIVGDAFCLGSLIGAMIIVAGFYAVMW  279 (313)
Q Consensus       204 ~~~~~ll~~g~~~s~~~~~l~~~a~~~~~a~~~s~~~~~~pv~a~i~~~l~~ge~~~~~~~~G~~lii~g~~l~~~  279 (313)
                      ..+.+++|.      +=--+++.+.++.+|++......+..+.++++.+++++++++..||...++...|+.+.+.
T Consensus        95 ~~vPa~iYa------lqNnl~yval~~ldaatyqVt~qlKI~tTA~f~vl~L~rkLs~~Qw~Al~lL~~Gv~~vQ~  164 (345)
T KOG2234|consen   95 VSVPALIYA------LQNNLQYVALSNLDAATYQVTYQLKILTTAIFSVLILRRKLSRLQWMALVLLFAGVALVQL  164 (345)
T ss_pred             HHHHHHHHH------HhhhHHHHHHhcCCchhhhhhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhc
Confidence            112233332      2223677899999999999999999999999999999999999999999999999999883

>PF04657 DUF606: Protein of unknown function, DUF606; InterPro: IPR006750 This family contains uncharacterised bacterial proteins

Probab=94.71  E-value=0.058  Score=43.09  Aligned_cols=69  Identities=12%  Similarity=0.136  Sum_probs=54.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHhccccChhhHhHhhhh-hHHHHHHHHHH----HhhhcccccccccCcchhhHHhhhhhhhh
Q 021377           34 CSFFLLSVFGCSSQIFSFVGIQYSSPTLSTAMLNL-IPAFTFVLAII----FRLEKLNWENKSSQAKSLGTFASIGGAFV  108 (313)
Q Consensus        34 ~~~~~~g~~~~~~~~~~~~al~~~~~~~a~ii~~~-~P~~~~l~a~~----~~~E~~~~~~~~~~~~~~g~~l~~~Gv~l  108 (313)
                      ++...-|+++..+..+....+...+++.++.+.-. +-+...++.++    .-|+++++.      |++|+++.++|+.+
T Consensus        65 ~w~~lGG~lG~~~V~~~~~~vp~lG~~~~~~l~~~GQl~~sl~iD~fG~fg~~~~~~~~~------r~lG~~l~i~Gv~L  138 (138)
T PF04657_consen   65 WWAYLGGLLGVFFVLSNIILVPRLGAALTTILIVAGQLIASLLIDHFGLFGAPKRPFSLR------RILGLALMIAGVIL  138 (138)
T ss_pred             hHHhccHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHccccCCCCCCCCHH------HHHHHHHHHHHHhC
Confidence            34445799999999999999999999998877664 55666667764    357788888      99999999999864

>KOG2922 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.32  E-value=0.011  Score=52.94  Aligned_cols=128  Identities=12%  Similarity=0.108  Sum_probs=94.1

Q ss_pred             CccchhHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHhccCCCcccccchhHHHHHHHHHH
Q 021377          135 QLSWILGGFFLAAEAFMNSAWFILQALILRKFAAVLIIMFYLFFFNTILSTAFALIVVSEPSDWKLGLDIGLVAVLYSAV  214 (313)
Q Consensus       135 ~~~~~~G~~~~l~s~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~g~  214 (313)
                      ..++..|.++++.|.+.-+....+.|+..++.. .   ..-+             ..+++....       .-..-+.|+
T Consensus        16 ~~d~~~G~~LaissS~~Ig~sfilkKkgl~r~~-~---~~~r-------------a~~gg~~yl-------~~~~Ww~G~   71 (335)
T KOG2922|consen   16 SSDNIIGLVLAISSSIFIGSSFILKKKGLKRAG-A---SGLR-------------AGEGGYGYL-------KEPLWWAGM   71 (335)
T ss_pred             ccCceeeeeehhhccEEEeeehhhhHHHHHHHh-h---hccc-------------ccCCCcchh-------hhHHHHHHH
Confidence            345678999999999999999999998766642 1   0000             011111111       113345566


Q ss_pred             HHHHHHHHHHHHHhccCCceeeeechhhHHHHHHHHHHHHhcCccchhhHHHHHHHHHHHHHHhcccccccc
Q 021377          215 IGTGFRVGLCTWCLSRTGPLYVSMFKPLAIVFSIVMDVVIVGDAFCLGSLIGAMIIVAGFYAVMWGKSKEEK  286 (313)
Q Consensus       215 ~~s~~~~~l~~~a~~~~~a~~~s~~~~~~pv~a~i~~~l~~ge~~~~~~~~G~~lii~g~~l~~~~~~~~~~  286 (313)
                      +..++|-.+-+-+..-.+++.++++..++.+..++++..+++|+++....+|+++.++|-.+.....+++++
T Consensus        72 ltm~vGei~NFaAYaFAPasLVtPLGAlsvi~saila~~~L~Ekl~~~g~lGc~l~v~Gst~iV~haP~e~~  143 (335)
T KOG2922|consen   72 LTMIVGEIANFAAYAFAPASLVTPLGALSVIISAILASFFLKEKLNLLGILGCVLCVVGSTTIVIHAPKEQE  143 (335)
T ss_pred             HHHHHHhHhhHHHHhhchHhhhccchhHHHHHHHHHHHHHHHHHHHHhhhhheeEEecccEEEEEecCcccc
Confidence            666677777777778899999999999999999999999999999999999999999998876655544443

>KOG1444 consensus Nucleotide-sugar transporter VRG4/SQV-7 [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]

Probab=94.31  E-value=0.68  Score=41.80  Aligned_cols=118  Identities=14%  Similarity=0.211  Sum_probs=79.8

Q ss_pred             HHHHHHHHhhhch--hHHHHHHHHHHHHHHHHHHHHHHh--ccCCCcccccchhHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 021377          155 WFILQALILRKFA--AVLIIMFYLFFFNTILSTAFALIV--VSEPSDWKLGLDIGLVAVLYSAVIGTGFRVGLCTWCLSR  230 (313)
Q Consensus       155 ~~v~~k~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~ll~~g~~~s~~~~~l~~~a~~~  230 (313)
                      -.+.+|.....++  .......+|.+.+.+........-  +.+.-++.......-..+++.+-+-+      -.+++++
T Consensus        27 m~vvNK~vls~y~f~~~l~l~~~Q~l~s~~~v~~lk~~~lv~~~~l~~~~~kk~~P~~~lf~~~i~t------~~~slk~  100 (314)
T KOG1444|consen   27 MTVVNKIVLSSYNFPMGLLLMLLQSLASVLVVLVLKRLGLVNFRPLDLRTAKKWFPVSLLFVGMLFT------GSKSLKY  100 (314)
T ss_pred             HHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHhceeecCCcChHHHHHHccHHHHHHHHHHH------ccccccc
Confidence            3456777766554  334455588888877766654321  11222333222212223444433322      2377899


Q ss_pred             CCceeeeechhhHHHHHHHHHHHHhcCccchhhHHHHHHHHHHHHHHh
Q 021377          231 TGPLYVSMFKPLAIVFSIVMDVVIVGDAFCLGSLIGAMIIVAGFYAVM  278 (313)
Q Consensus       231 ~~a~~~s~~~~~~pv~a~i~~~l~~ge~~~~~~~~G~~lii~g~~l~~  278 (313)
                      ++....+++..+.|+.+++.+.+++|.+++...+.....+++|.....
T Consensus       101 lnVpm~tv~kn~tii~~ai~E~lf~~~~~~~~v~~Sv~~m~~~s~~~~  148 (314)
T KOG1444|consen  101 LNVPMFTVFKNLTIILTAIGEVLFFGKRPSNKVWASVFAMIIGSVAAA  148 (314)
T ss_pred             cCchHHHHHhhchHHHHHHhHHhhcCcCchhhHHHHHHHHHHHHHhhc
Confidence            999999999999999999999999999999999999999998887654

>TIGR00803 nst UDP-galactose transporter

Probab=91.94  E-value=0.12  Score=44.49  Aligned_cols=63  Identities=11%  Similarity=0.100  Sum_probs=55.7

Q ss_pred             HHHHHHHHHHHHHhccccChhhHhHhhhhhHHHHHHHHHHHhhhcccccccccCcchhhHHhhhhhhhh
Q 021377           40 SVFGCSSQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFV  108 (313)
Q Consensus        40 g~~~~~~~~~~~~al~~~~~~~a~ii~~~~P~~~~l~a~~~~~E~~~~~~~~~~~~~~g~~l~~~Gv~l  108 (313)
                      .+..+....+....+++.++..-++...+.++++.+++.++++|+++..      ++.|..+.+.|+.+
T Consensus       159 ~~~~a~~~~~v~~vlk~~~~~~~~~~~~~~~~~s~lls~~~f~~~ls~~------~~~g~~lV~~~~~l  221 (222)
T TIGR00803       159 GLLNVGGGLCIGGVVRYADNTTKSFVTALSIILSTLASVRLFDAKISST------FYLGAILVFLATFL  221 (222)
T ss_pred             HHHHHhcCceeeehhHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCccHH------HHHHHHHHHeeeEe
Confidence            3444677778888999999999999999999999999999999999999      99999999888753

NSTs generally appear to function by antiport mechanisms, exchanging a nucleotide-sugar for a nucleotide. Thus, CMP-sialic acid is exchanged for CMP; GDP-mannose is preferentially exchanged for GMP, and UDP-galactose and UDP-N-acetylglucosamine are exchanged for UMP (or possibly UDP). Other nucleotide sugars (e.g., GDP-fucose, UDP-xylose, UDP-glucose, UDP-N-acetylgalactosamine, etc.) may also be transported in exchange for various nucleotides, but their transporters have not been molecularly characterized. Each compound appears to be translocated by its own transport protein. Transport allows the compound, synthesized in the cytoplasm, to be exported to the lumen of the Golgi apparatus or the endoplasmic reticulum where it is used for the synthesis of glycoproteins and glycolipids.

>KOG2765 consensus Predicted membrane protein [Function unknown]

Probab=91.88  E-value=0.09  Score=48.28  Aligned_cols=66  Identities=18%  Similarity=0.297  Sum_probs=59.7

Q ss_pred             HHHHHHHHHhccCCceeeeechhhHHHHHHHHHHHHhcCccchhhHHHHHHHHHHHHHHhcccccc
Q 021377          219 FRVGLCTWCLSRTGPLYVSMFKPLAIVFSIVMDVVIVGDAFCLGSLIGAMIIVAGFYAVMWGKSKE  284 (313)
Q Consensus       219 ~~~~l~~~a~~~~~a~~~s~~~~~~pv~a~i~~~l~~ge~~~~~~~~G~~lii~g~~l~~~~~~~~  284 (313)
                      ++.+.++.++...+++..+++....-+|+..++.++-+|++++..+++..+-+.|++++...+.+.
T Consensus       171 ~anl~~naALa~TsVAS~TilSStSs~FtL~la~if~~e~ft~sKllav~~si~GViiVt~~~s~~  236 (416)
T KOG2765|consen  171 LANLTSNAALAFTSVASTTILSSTSSFFTLFLAAIFPVERFTLSKLLAVFVSIAGVIIVTMGDSKQ  236 (416)
T ss_pred             HHHHHHHHHhhhhhhhhhhhhhhcchHHHHHHHHHcCcchhhHHHHHHHHHhhccEEEEEeccccc
Confidence            556678888999999999999999999999999999999999999999999999999988776654

>PF02694 UPF0060: Uncharacterised BCR, YnfA/UPF0060 family; InterPro: IPR003844 This entry describes integral membrane proteins of unknown function

Probab=91.84  E-value=4.4  Score=30.54  Aligned_cols=40  Identities=23%  Similarity=0.233  Sum_probs=35.2

Q ss_pred             HHHHHHHHHHHHhcCccchhhHHHHHHHHHHHHHHhcccc
Q 021377          243 AIVFSIVMDVVIVGDAFCLGSLIGAMIIVAGFYAVMWGKS  282 (313)
Q Consensus       243 ~pv~a~i~~~l~~ge~~~~~~~~G~~lii~g~~l~~~~~~  282 (313)
                      -.+.+.++++.+-|++|+...++|..+.++|+.++.+..|
T Consensus        67 fI~~Sl~W~w~vdg~~Pd~~D~iGa~i~L~G~~iI~~~PR  106 (107)
T PF02694_consen   67 FIVASLLWGWLVDGVRPDRWDWIGAAICLVGVAIILFAPR  106 (107)
T ss_pred             HHHHHHHHHhhhcCcCCChHHHHhHHHHHHhHHheEecCC
Confidence            3677889999999999999999999999999998876544

; GO: 0016020 membrane

>KOG1580 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]

Probab=91.50  E-value=0.29  Score=42.28  Aligned_cols=74  Identities=18%  Similarity=0.241  Sum_probs=67.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhccccChhhHhHhhhhhHHHHHHHHHHHhhhcccccccccCcchhhHHhhhhhhhhh
Q 021377           30 FSILCSFFLLSVFGCSSQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVV  109 (313)
Q Consensus        30 ~~~~~~~~~~g~~~~~~~~~~~~al~~~~~~~a~ii~~~~P~~~~l~a~~~~~E~~~~~~~~~~~~~~g~~l~~~Gv~ll  109 (313)
                      +..++.+.+.++.+++++.|.|.-+.+-++-.-+++..+--+|+.+.+.++++.+++.+      +|+|..+.+.|...=
T Consensus       238 P~~~~~l~l~ai~s~LGQ~fIF~tv~~FgPLtCSivTTTRKfFTil~SVllf~npls~r------QwlgtvlVF~aL~~D  311 (337)
T KOG1580|consen  238 PYVFWDLTLLAIASCLGQWFIFKTVEEFGPLTCSIVTTTRKFFTILISVLLFNNPLSGR------QWLGTVLVFSALTAD  311 (337)
T ss_pred             cHHHHHHHHHHHHHHhhhHHHHHHHHHhCCeeEEEEeehHHHHHHHHHHHHhcCcCcHH------HHHHHHHHHHHhhhH
Confidence            35577788889988999999999999999999999999999999999999999999999      999999988887653

>KOG4314 consensus Predicted carbohydrate/phosphate translocator [General function prediction only]

Probab=90.27  E-value=0.1  Score=43.70  Aligned_cols=66  Identities=14%  Similarity=0.293  Sum_probs=59.0

Q ss_pred             HHHHHHHHhccCCceeeeechhhHHHHHHHHHHHHhcCccchhhHHHHHHHHHHHHHHhccccccc
Q 021377          220 RVGLCTWCLSRTGPLYVSMFKPLAIVFSIVMDVVIVGDAFCLGSLIGAMIIVAGFYAVMWGKSKEE  285 (313)
Q Consensus       220 ~~~l~~~a~~~~~a~~~s~~~~~~pv~a~i~~~l~~ge~~~~~~~~G~~lii~g~~l~~~~~~~~~  285 (313)
                      +-+.|..++++++++.++.+..-..-+.-+++++.+|+++....++..++.+.|+.+..+.++.++
T Consensus        66 aNY~Yl~AL~~is~s~asai~~CNaAFVfiLa~IVL~D~~~~~kIlaailAI~GiVmiay~DN~~a  131 (290)
T KOG4314|consen   66 ANYLYLLALKKISASDASAIFACNAAFVFILAIIVLGDRFMGFKILAAILAIGGIVMIAYADNEHA  131 (290)
T ss_pred             CCcHHHHHHHhcChhhhHHHHHhhHHHHHHHHHHHhccchhhhhHHHHHHHhCcEEEEEeccchhh
Confidence            346788899999999999999999999999999999999999999999999999998877766544

>PRK02237 hypothetical protein; Provisional

Probab=89.87  E-value=1.3  Score=33.45  Aligned_cols=44  Identities=20%  Similarity=0.206  Sum_probs=36.9

Q ss_pred             chhhHHHHHHHHHHHHhcCccchhhHHHHHHHHHHHHHHhcccc
Q 021377          239 FKPLAIVFSIVMDVVIVGDAFCLGSLIGAMIIVAGFYAVMWGKS  282 (313)
Q Consensus       239 ~~~~~pv~a~i~~~l~~ge~~~~~~~~G~~lii~g~~l~~~~~~  282 (313)
                      +.-+-.+.++++++.+-|++|+...++|..+.++|+.++.+..|
T Consensus        65 YGGvyI~~Sl~W~w~vdg~~Pd~~D~iGa~v~L~G~~iI~~~pR  108 (109)
T PRK02237         65 YGGVYVAGSLLWLWVVDGVRPDRWDWIGAAICLVGMAVIMYAPR  108 (109)
T ss_pred             hhhHHHHHHHHHHHHhcCcCCChhHHHhHHHHHHhHHHheecCC
Confidence            33444677889999999999999999999999999988866543

>PF06379 RhaT: L-rhamnose-proton symport protein (RhaT); InterPro: IPR004673 These proteins are members of the L-Rhamnose Symporter (RhaT) family

Probab=88.44  E-value=3.2  Score=38.09  Aligned_cols=140  Identities=14%  Similarity=0.118  Sum_probs=80.7

Q ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHHH--HHhccCCC-cccccchhHHHHHHHHH
Q 021377          137 SWILGGFFLAAEAFMNSAWFILQALILRKFAAVLIIMFYLFFFNTILSTAFA--LIVVSEPS-DWKLGLDIGLVAVLYSA  213 (313)
Q Consensus       137 ~~~~G~~~~l~s~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~-~~~~~~~~~~~~ll~~g  213 (313)
                      +-..|.++-.+++++-+.+.+=.||. |+.+ =...=..+.+++-+ ..|..  ++.-++.. -....+...+......|
T Consensus         4 ~ii~Gii~h~iGg~~~~sfy~P~kkv-k~Ws-WEs~Wlv~gi~swl-i~P~~~a~l~ip~~~~i~~~~~~~~l~~~~l~G   80 (344)
T PF06379_consen    4 AIILGIIFHAIGGFASGSFYVPFKKV-KGWS-WESYWLVQGIFSWL-IVPWLWALLAIPDFFSIYSATPASTLFWTFLFG   80 (344)
T ss_pred             hHHHHHHHHHHHHHHhhhhccchhhc-CCcc-HHHHHHHHHHHHHH-HHHHHHHHHhCCcHHHHHHhCChhHHHHHHHHH
Confidence            34689999999999999999988875 4442 12222222233322 22322  22222221 11111222444445555


Q ss_pred             HHHHHHHHHHHHHHhccCCceee-eechhhHHHHHHHHHHHHhc-------CccchhhHHHHHHHHHHHHHHhcc
Q 021377          214 VIGTGFRVGLCTWCLSRTGPLYV-SMFKPLAIVFSIVMDVVIVG-------DAFCLGSLIGAMIIVAGFYAVMWG  280 (313)
Q Consensus       214 ~~~s~~~~~l~~~a~~~~~a~~~-s~~~~~~pv~a~i~~~l~~g-------e~~~~~~~~G~~lii~g~~l~~~~  280 (313)
                      + -=+++-..|-.++|+++.+.. ++..-+.-+++.++--++.|       ++-....++|.++.++|+.+..+.
T Consensus        81 ~-lWGIGgltfGl~mryLGvSLG~sI~lGl~~~~GTlippi~~g~~~~l~~~~~g~~vL~Gv~v~LiGIai~g~A  154 (344)
T PF06379_consen   81 V-LWGIGGLTFGLAMRYLGVSLGQSIALGLCAVFGTLIPPIFQGTFDELLATPSGQIVLLGVAVCLIGIAICGKA  154 (344)
T ss_pred             H-HHhcchhhHhHHHHHHhHHHHHHHHHHHHHHHhhchHHHHcCcccccccCCCchhhhhHHHHHHHHHHHHhHH
Confidence            5 345777788888999887655 33344455555555444433       223346788999999999998764

This family includes two characterised members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.; GO: 0015153 rhamnose transmembrane transporter activity, 0008645 hexose transport, 0016021 integral to membrane

>KOG1581 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]

Probab=85.70  E-value=1.2  Score=40.05  Aligned_cols=75  Identities=23%  Similarity=0.303  Sum_probs=66.8

Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHhccccChhhHhHhhhhhHHHHHHHHHHHhhhcccccccccCcchhhHHhhhhhhhh
Q 021377           29 TFSILCSFFLLSVFGCSSQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFV  108 (313)
Q Consensus        29 ~~~~~~~~~~~g~~~~~~~~~~~~al~~~~~~~a~ii~~~~P~~~~l~a~~~~~E~~~~~~~~~~~~~~g~~l~~~Gv~l  108 (313)
                      .++-++-+++...+++.++.+.|+-++.-++-.-++|+.+==+++.+++.+.++.++++.      +|.|+.+.+.|+.+
T Consensus       237 hp~~~~Di~l~s~~gavGQ~FI~~TI~~FGslt~t~I~ttRk~~si~lS~i~f~h~~s~~------q~~g~~iVFg~i~l  310 (327)
T KOG1581|consen  237 HPDVAFDILLYSTCGAVGQLFIFYTIERFGSLTFTTIMTTRKMVSIMLSCIVFGHPLSSE------QWLGVLIVFGGIFL  310 (327)
T ss_pred             ChhHHHHHHHHHHhhhhhhheehhhHhhcccHHHHHHHHHHHHHHHHHHHHHhCCccchh------hccCeeeehHHHHH
Confidence            445567788889999999999999999999999999999988999999999999999999      99999988888876


Q ss_pred             h
Q 021377          109 V  109 (313)
Q Consensus       109 l  109 (313)
                      =
T Consensus       311 ~  311 (327)
T KOG1581|consen  311 E  311 (327)
T ss_pred             H
Confidence            4

>KOG4831 consensus Unnamed protein [Function unknown]

Probab=85.43  E-value=2  Score=32.22  Aligned_cols=59  Identities=14%  Similarity=0.140  Sum_probs=47.1

Q ss_pred             HHHHHHHHHhccCCceeeeechhh-HHHHHHHHHHHHhcCccchhhHHHHHHHHHHHHHH
Q 021377          219 FRVGLCTWCLSRTGPLYVSMFKPL-AIVFSIVMDVVIVGDAFCLGSLIGAMIIVAGFYAV  277 (313)
Q Consensus       219 ~~~~l~~~a~~~~~a~~~s~~~~~-~pv~a~i~~~l~~ge~~~~~~~~G~~lii~g~~l~  277 (313)
                      .+..+|+..+++.+-+.+..+.+. .-.++.+.+..+-.|...-..++|..++++|+.++
T Consensus        64 cgSaly~~tLa~a~islavpv~nsltfafta~~G~~LGE~~~g~~a~lGt~liv~Gi~Lc  123 (125)
T KOG4831|consen   64 CGSALYYLTLASAPISLAVPVTNSLTFAFTAIFGKALGEETQGGLALLGTSLIVFGIWLC  123 (125)
T ss_pred             hhHHHHHHHHhcCCceeeeeecchhHHHHHHHHHHHhccccccceeehhhhHHhhhhhhe
Confidence            455678888999999998877665 67778889987655666777889999999998875

>PF03547 Mem_trans: Membrane transport protein; InterPro: IPR004776 This entry represents a mostly uncharacterised family of membrane transport proteins found in eukaryotes, bacteria and archaea

Probab=84.74  E-value=34  Score=31.85  Aligned_cols=10  Identities=10%  Similarity=-0.429  Sum_probs=4.3

Q ss_pred             HHHHHHHHHH
Q 021377          216 GTGFRVGLCT  225 (313)
Q Consensus       216 ~s~~~~~l~~  225 (313)
                      ...+++.+..
T Consensus        72 ~~~~~~~~~~   81 (385)
T PF03547_consen   72 IFILGLLLGF   81 (385)
T ss_pred             HHHHHHHHHH
Confidence            4444444433

Most characterised members of this family are the PIN components of auxin efflux systems from plants. These carriers are saturable, auxin-specific, and localized to the basal ends of auxin transport-competent cells [, ]. Plants typically posses several of these proteins, each displaying a unique tissue-specific expression pattern. They are expressed in almost all plant tissues including vascular tissues and roots, and influence many processes including the establishment of embryonic polarity, plant growth, apical hook formation in seedlings and the photo- and gravitrophic responses. These plant proteins are typically 600-700 amino acyl residues long and exhibit 8-12 transmembrane segments.; GO: 0055085 transmembrane transport, 0016021 integral to membrane

>PF07168 Ureide_permease: Ureide permease; InterPro: IPR009834 This entry represents ureide permease, which transports a wide spectrum of oxo derivatives of heterocyclic nitrogen compounds, including allantoin, uric acid and xanthine, but not adenine

Probab=83.68  E-value=0.79  Score=41.14  Aligned_cols=131  Identities=8%  Similarity=0.026  Sum_probs=71.3

Q ss_pred             HHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHhccCC-----C------cccccchhHHHHHHHHHH
Q 021377          146 AAEAFMNSAWFILQALILRKFAAVLIIMFYLFFFNTILSTAFALIVVSEP-----S------DWKLGLDIGLVAVLYSAV  214 (313)
Q Consensus       146 l~s~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~------~~~~~~~~~~~~ll~~g~  214 (313)
                      +++.+||+-+...+|...|+.. ......|=+.++.++..++..++-+..     +      +........+..-+.-|+
T Consensus         2 ~itmlcwGSW~nt~kL~~r~gR-~~qh~Y~DYsig~lL~All~A~TlGs~G~~~~~g~~Fl~qL~Q~n~~sv~~A~aGGv   80 (336)
T PF07168_consen    2 VITMLCWGSWPNTQKLAERRGR-LPQHFYWDYSIGNLLAALLIAFTLGSIGESTPEGPNFLTQLSQANWPSVLFAMAGGV   80 (336)
T ss_pred             eeehhhhcChHHHHHHHHhcCC-ccceehhHHHHHHHHHHHHHHHhccccCCCCCCCccHHHHHhcCChHHHHHHHHhhH
Confidence            4677899999998887766542 112344555555554444432222111     1      111111112333334444


Q ss_pred             HHHHHHHHHHHHHhccCCceeeeechhh-HHHHHHHHHHHHhcCccc--hhhHHHHHHHHHHHHHHhc
Q 021377          215 IGTGFRVGLCTWCLSRTGPLYVSMFKPL-AIVFSIVMDVVIVGDAFC--LGSLIGAMIIVAGFYAVMW  279 (313)
Q Consensus       215 ~~s~~~~~l~~~a~~~~~a~~~s~~~~~-~pv~a~i~~~l~~ge~~~--~~~~~G~~lii~g~~l~~~  279 (313)
                      + --++-++..+++...|.+++-++..- .-+.++++.|+ ++.+.+  .....|..++++++.+...
T Consensus        81 v-fnlgNillq~aia~aGmSVafpvg~glalVlGv~~NYf-ld~~~n~a~iLF~GV~cf~iAI~lga~  146 (336)
T PF07168_consen   81 V-FNLGNILLQAAIAFAGMSVAFPVGIGLALVLGVTLNYF-LDPKINRAEILFPGVACFLIAIILGAA  146 (336)
T ss_pred             h-hhhHHHHHHHHHHHhcceeeeeeecceEEEEeeeeeee-ccCCCCCceEEEccHHHHHHHHHHHHH
Confidence            3 33777777788888887777655432 33445555554 445554  2556788888888877553

Transport is dependent on glucose and a proton gradient [].

>COG3238 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=83.46  E-value=2.1  Score=34.56  Aligned_cols=74  Identities=12%  Similarity=0.090  Sum_probs=49.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhccccChhhHhHhhh-hhHHHHHHHHHH-Hh---hhcccccccccCcchhhHHhhhh
Q 021377           30 FSILCSFFLLSVFGCSSQIFSFVGIQYSSPTLSTAMLN-LIPAFTFVLAII-FR---LEKLNWENKSSQAKSLGTFASIG  104 (313)
Q Consensus        30 ~~~~~~~~~~g~~~~~~~~~~~~al~~~~~~~a~ii~~-~~P~~~~l~a~~-~~---~E~~~~~~~~~~~~~~g~~l~~~  104 (313)
                      .+..++...-|++|+.+-...........++....+.- -+-+...++..+ .+   ++++++.      ++.|+++.++
T Consensus        66 ~~~pwW~~~GG~lGa~~vt~s~~l~p~lGa~~t~~l~i~gQli~glliD~fG~~g~~~~~~~~~------r~lgi~L~l~  139 (150)
T COG3238          66 ASAPWWAWIGGLLGAIFVTSSILLAPRLGAATTIALVIAGQLIMGLLIDHFGWFGVPKRPLNLP------RILGILLVLA  139 (150)
T ss_pred             cCCchHHHHccchhhhhhhhhHHhccchhHHHHHHHHHHHHHHHHHHHHhhcccCCCcCCCCHH------HHHHHHHHHH
Confidence            44455666678888777777777778887777665544 444555555543 22   3556777      9999999999


Q ss_pred             hhhhh
Q 021377          105 GAFVV  109 (313)
Q Consensus       105 Gv~ll  109 (313)
                      |++++
T Consensus       140 gil~~  144 (150)
T COG3238         140 GILLA  144 (150)
T ss_pred             HHHHh
Confidence            95554

>COG5070 VRG4 Nucleotide-sugar transporter [Carbohydrate transport and metabolism / Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]

Probab=82.54  E-value=2.8  Score=36.13  Aligned_cols=78  Identities=12%  Similarity=0.096  Sum_probs=67.0

Q ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHhccccChhhHhHhhhhhHHHHHHHHHHHhhhcccccccccCcchhhHHhhhhhh
Q 021377           27 QLTFSILCSFFLLSVFGCSSQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGA  106 (313)
Q Consensus        27 ~~~~~~~~~~~~~g~~~~~~~~~~~~al~~~~~~~a~ii~~~~P~~~~l~a~~~~~E~~~~~~~~~~~~~~g~~l~~~Gv  106 (313)
                      .++.......++.|+...+-.++..+.++-++++.-+++..+.-...++.+.++++|+.+..      .+.++++++...
T Consensus       218 nl~~d~l~am~ISgl~svgiSy~saWcvrVtSSTtySMvGALNKlp~alaGlvffdap~nf~------si~sillGflsg  291 (309)
T COG5070         218 NLSVDSLMAMFISGLCSVGISYCSAWCVRVTSSTTYSMVGALNKLPIALAGLVFFDAPVNFL------SIFSILLGFLSG  291 (309)
T ss_pred             CCChHHHHHHHHHHHHHhhhhhccceeEeehhhhHHHHHHHhhhChHHHhhhhhcCCchhHH------HHHHHHHHHHHH
Confidence            34555667788889988888889999999999999999999988888999999999999999      999999988766


Q ss_pred             hhhe
Q 021377          107 FVVT  110 (313)
Q Consensus       107 ~ll~  110 (313)
                      ++-.
T Consensus       292 ~iYa  295 (309)
T COG5070         292 AIYA  295 (309)
T ss_pred             HHHH
Confidence            6554

>KOG3912 consensus Predicted integral membrane protein [General function prediction only]

Probab=82.28  E-value=1.3  Score=39.43  Aligned_cols=65  Identities=14%  Similarity=0.100  Sum_probs=52.7

Q ss_pred             HHHHHHHHHHHHhccCCceeeeechhhHHHHHHHHHHHHhcCccchhhHHHHHHHHHHHHHHhcc
Q 021377          216 GTGFRVGLCTWCLSRTGPLYVSMFKPLAIVFSIVMDVVIVGDAFCLGSLIGAMIIVAGFYAVMWG  280 (313)
Q Consensus       216 ~s~~~~~l~~~a~~~~~a~~~s~~~~~~pv~a~i~~~l~~ge~~~~~~~~G~~lii~g~~l~~~~  280 (313)
                      |-..+-.+.+.++..++++..-...-...+|+.+++.-+++.+++..+|.|+..+.+|+..+-..
T Consensus        95 ~Di~gsslm~vgL~lTsASsfQMlRGaviIFvglfst~~Ln~ti~~~qWl~i~fv~lGlviVg~~  159 (372)
T KOG3912|consen   95 CDIAGSSLMYVGLNLTSASSFQMLRGAVIIFVGLFSTMFLNRTITGRQWLGILFVSLGLVIVGSL  159 (372)
T ss_pred             HHHhhhHHHHHHHHHhhHHHHHHhhcchhhhhHHHHHHHHhcccchhhHHHHHHHHhhhheeeee
Confidence            34445555666677777777777777788999999999999999999999999999999887543

>PF04342 DUF486: Protein of unknown function, DUF486; InterPro: IPR007437 This family contains several proteins of uncharacterised function

Probab=80.10  E-value=1.8  Score=32.43  Aligned_cols=31  Identities=16%  Similarity=0.323  Sum_probs=27.0

Q ss_pred             HHHHHHHhcCccchhhHHHHHHHHHHHHHHh
Q 021377          248 IVMDVVIVGDAFCLGSLIGAMIIVAGFYAVM  278 (313)
Q Consensus       248 ~i~~~l~~ge~~~~~~~~G~~lii~g~~l~~  278 (313)
                      +.+++++++|++++.++.|.++++.+++++.
T Consensus        77 ~~Fsv~~l~E~l~~n~l~af~~i~~av~fiF  107 (108)
T PF04342_consen   77 APFSVFYLGEPLKWNYLWAFLCILGAVYFIF  107 (108)
T ss_pred             HHHHHHHhCCCccHHHHHHHHHHHHhhheee
Confidence            5678889999999999999999999887653

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	313
2i68_A	137	Protein EMRE; transmembrane protein, small-multidr	99.21
3b5d_A	110	Multidrug transporter EMRE; helical membrane prote	98.77
2i68_A	137	Protein EMRE; transmembrane protein, small-multidr	98.32
3b5d_A	110	Multidrug transporter EMRE; helical membrane prote	98.25

>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}

Probab=99.21  E-value=2.9e-11  Score=95.29  Aligned_cols=71  Identities=18%  Similarity=0.158  Sum_probs=54.9

Q ss_pred             HHHHHHHHHHHHHHHHHhccCCceeeeec-hhhHHHHHHHHHHHHhcCccchhhHHHHHHHHHHHHHHhccc
Q 021377          211 YSAVIGTGFRVGLCTWCLSRTGPLYVSMF-KPLAIVFSIVMDVVIVGDAFCLGSLIGAMIIVAGFYAVMWGK  281 (313)
Q Consensus       211 ~~g~~~s~~~~~l~~~a~~~~~a~~~s~~-~~~~pv~a~i~~~l~~ge~~~~~~~~G~~lii~g~~l~~~~~  281 (313)
                      .+++++++++|.+|++++++.+++++..+ ..+.|+++++++++++||++++.+++|+++|++|+++....+
T Consensus        34 ~l~i~~~~ls~~l~~~alk~i~~s~ay~iw~~l~pv~~~l~g~l~lgE~ls~~~~~Gi~LIi~GV~ll~~~~  105 (137)
T 2i68_A           34 VGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLLS  105 (137)
T ss_dssp             CHHHHHHHHHHHHHHHHHC-----CHHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHC-
T ss_pred             HHHHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence            46677899999999999999999999999 899999999999999999999999999999999999987654

>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*

Probab=98.77  E-value=6e-08  Score=73.52  Aligned_cols=70  Identities=19%  Similarity=0.160  Sum_probs=64.6

Q ss_pred             HHHHHHHHHHHHHHHHHhccCCceeeeec-hhhHHHHHHHHHHHHhcCccchhhHHHHHHHHHHHHHHhcc
Q 021377          211 YSAVIGTGFRVGLCTWCLSRTGPLYVSMF-KPLAIVFSIVMDVVIVGDAFCLGSLIGAMIIVAGFYAVMWG  280 (313)
Q Consensus       211 ~~g~~~s~~~~~l~~~a~~~~~a~~~s~~-~~~~pv~a~i~~~l~~ge~~~~~~~~G~~lii~g~~l~~~~  280 (313)
                      ..++++.+++|.++.+++|+.+.+++..+ ..+.|+++++++++++||++++.+++|..+|+.|+++....
T Consensus        34 ~~~~~~~~~~~~~~~~al~~~p~s~ay~i~~g~~~v~~~l~~~~~~~E~~s~~~~~Gi~lIi~Gv~~l~~~  104 (110)
T 3b5d_A           34 VGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLL  104 (110)
T ss_pred             HHHHHHHHHHHHHHHHHHHhCChhhHHHHHhhHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence            45666888999999999999999999888 89999999999999999999999999999999999988654

>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}

Probab=98.32  E-value=7.2e-07  Score=70.04  Aligned_cols=68  Identities=13%  Similarity=0.219  Sum_probs=52.4

Q ss_pred             HHHHHH-HHHHHHHHHhccccChhhHhHh-hhhhHHHHHHHHHHHhhhcccccccccCcchhhHHhhhhhhhhhee
Q 021377           38 LLSVFG-CSSQIFSFVGIQYSSPTLSTAM-LNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVTF  111 (313)
Q Consensus        38 ~~g~~~-~~~~~~~~~al~~~~~~~a~ii-~~~~P~~~~l~a~~~~~E~~~~~~~~~~~~~~g~~l~~~Gv~ll~~  111 (313)
                      +.+++. .++++++..++++.+++.+..+ .++.|+++.++++++++|++++.      +++|+++.+.|++++..
T Consensus        34 ~l~i~~~~ls~~l~~~alk~i~~s~ay~iw~~l~pv~~~l~g~l~lgE~ls~~------~~~Gi~LIi~GV~ll~~  103 (137)
T 2i68_A           34 VGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLP------AIIGMMLICAGVLIINL  103 (137)
T ss_dssp             CHHHHHHHHHHHHHHHHHC-----CHHHHHHHHHHHHHHHHHHHHHC------------CHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHHhCCCCCHH------HHHHHHHHHHHHHHHhc
Confidence            566666 9999999999999999999888 89999999999999999999999      99999999999999854

>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*

Probab=98.25  E-value=1.9e-06  Score=65.15  Aligned_cols=67  Identities=13%  Similarity=0.213  Sum_probs=62.1

Q ss_pred             HHHHHH-HHHHHHHHHhccccChhhHhHh-hhhhHHHHHHHHHHHhhhcccccccccCcchhhHHhhhhhhhhhe
Q 021377           38 LLSVFG-CSSQIFSFVGIQYSSPTLSTAM-LNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVT  110 (313)
Q Consensus        38 ~~g~~~-~~~~~~~~~al~~~~~~~a~ii-~~~~P~~~~l~a~~~~~E~~~~~~~~~~~~~~g~~l~~~Gv~ll~  110 (313)
                      +.+.+. .++++++..++++.|.+.+-.+ ..+.|+++.++++++++|++++.      +++|+.+.+.|++++.
T Consensus        34 ~~~~~~~~~~~~~~~~al~~~p~s~ay~i~~g~~~v~~~l~~~~~~~E~~s~~------~~~Gi~lIi~Gv~~l~  102 (110)
T 3b5d_A           34 VGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLP------AIIGMMLICAGVLIIN  102 (110)
T ss_pred             HHHHHHHHHHHHHHHHHHHhCChhhHHHHHhhHHHHHHHHHHHHHhCCCCCHH------HHHHHHHHHHHHHHHh
Confidence            456666 8999999999999999999888 79999999999999999999999      9999999999999985

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00