Citrus Sinensis ID: 021399

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310---
Protein Sequence
MRPILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKRYGFLLLQINVS
Secondary Structure (PSIPRED)
cccEEEEcccccEEEEEEcccccEEEEEEccccEEEEEccccEEEEEEccccccEEEEEEcccccEEEEccccccEEEEEcccccEEEEEcccccEEEEEEccccEEEEEEccccEEEEEcccccccccccccccccEEEEEEcccccEEEEEEcccccEEEEEEccccEEEEEcccccEEEcccccccccccEEEEEEcccccEEEEEEcccEEEEEEcccccEEEEccccccEEEEEEcccccEEEEEEcccccEEEEEEccccccEEEEEEccccEEEEEcccccccEEEEEEcccccEEEEEEcccccc
Secondary Structure Prediction (SSPRO)
cccEEEccccccEEEEEEcccccEEEEcccccEEEEEEcccccEEEEEEcccccEEEEEEcccccEEEEcccccEEEEEEcccccEEEEEcccccEEEEEEccccEEEEcccccEEEEEEcccccEEEEEEccccccEEEEEEcccccEEEEEEcccccEEEEcccccEEEEEEcccccEEEEEcccccccccEEEEEEcccccEEEEEEccccEEEEEcccccEEEEEcccccEEEEEEcccccEEEEEcccccEEEEEEEccccccEEEEEEcccccEEEEEccccccEEEEEEcccccEEEEcccccccc
Coil and Loop (DISEMBL)
mrpilmkgherpltylkynkdgdllfscakdhtptvwfadngerlgtyrghngavwccdvsrdsmtliTGSADQTAKLWnvetgaqlftfnfdsparsvdfavgdklavittdpfmelnSAIHVKRiardpadqggesvlilkgpqgrinravwgplnrtIISAGEDAIVRIWDTETGKLlkesdketghkkTITSLakaadgshfltgsldksaKLWDARTLELIKTYVterpvnavtmspLLDHVVlgggqdasavtttdhragkFEAKFFDKILQEEiggvkghfgpinalafnpdgkryGFLLLQINVS
Flexible Loop (DISEMBL)
mrpilmkgherpltylKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLilkgpqgrinravwgpLNRTiisagedaivRIWDTETGkllkesdketghkktitslakaadgshfltgsldksakLWDARTLELIKTYVTERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKRYGFLLLQINVS
Low Complexity Region (SEG)
MRPILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKRYGFLLLQINVS
Disordered region (IsUnstruct)
***********PLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKL***********************SHFLTGSLDKSAKLWDARTLELIKTYVTERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKRYGFLLLQI***
Disordered Region (DISOPRED)
MRPILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKRYGFLLLQINV*
Disordered Region (DISEMBL)
MRPILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKRYGFLLLQINVS
Disordered Region (DISPRO)
*RPILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKRYGFL*******
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MRPILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKRYGFLLLQINVS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	313	2.2.26 [Sep-21-2011]
Q38884	328	Eukaryotic translation in	no	no	0.968	0.923	0.803	1e-141
B4Q354	326	Eukaryotic translation in	N/A	no	0.980	0.941	0.458	7e-79
B4I195	326	Eukaryotic translation in	N/A	no	0.980	0.941	0.458	8e-79
O02195	326	Eukaryotic translation in	yes	no	0.980	0.941	0.458	8e-79
B0XFT7	328	Eukaryotic translation in	N/A	no	0.980	0.935	0.456	1e-78
Q29L19	326	Eukaryotic translation in	yes	no	0.974	0.935	0.468	2e-78
B4GSH1	326	Eukaryotic translation in	N/A	no	0.974	0.935	0.468	2e-78
B3N4C7	326	Eukaryotic translation in	N/A	no	0.980	0.941	0.455	2e-78
Q16K15	326	Eukaryotic translation in	N/A	no	0.980	0.941	0.455	3e-78
B4JB43	326	Eukaryotic translation in	N/A	no	0.980	0.941	0.458	2e-77

>sp|Q38884|EIF3I_ARATH Eukaryotic translation initiation factor 3 subunit I OS=Arabidopsis thaliana GN=TIF3I1 PE=2 SV=2

 Score =  501 bits (1290), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 245/305 (80%), Positives = 275/305 (90%), Gaps = 2/305 (0%)

Query: 1   MRPILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDV 60
           MRPILMKGHERPLT+L+YN++GDLLFSCAKDHTPT+WFADNGERLGTYRGHNGAVWCCDV
Sbjct: 1   MRPILMKGHERPLTFLRYNREGDLLFSCAKDHTPTLWFADNGERLGTYRGHNGAVWCCDV 60

Query: 61  SRDSMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNS 120
           SRDS  LITGSADQTAKLW+V++G +LFTF F++P RSVDFAVGD+LAVITTD F++  +
Sbjct: 61  SRDSSRLITGSADQTAKLWDVKSGKELFTFKFNAPTRSVDFAVGDRLAVITTDHFVDRTA 120

Query: 121 AIHVKRIARDPADQGGESVLILKGPQG--RINRAVWGPLNRTIISAGEDAIVRIWDTETG 178
           AIHVKRIA DP +Q  ESVL+L  P G  RINRAVWGPLN+TI+S GED ++RIWD ETG
Sbjct: 121 AIHVKRIAEDPEEQDAESVLVLHCPDGKKRINRAVWGPLNQTIVSGGEDKVIRIWDAETG 180

Query: 179 KLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTERPVNAV 238
           KLLK+SD+E GHKK ITSL KAAD SHFLTGSLDK+AKLWD RTL L+KTY T  PVNAV
Sbjct: 181 KLLKQSDEEVGHKKDITSLCKAADDSHFLTGSLDKTAKLWDMRTLTLLKTYTTVVPVNAV 240

Query: 239 TMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNP 298
           ++SPLL+HVVLGGGQDASAVTTTDHRAGKFEAKF+DKILQEEIGGVKGHFGPINALAFNP
Sbjct: 241 SLSPLLNHVVLGGGQDASAVTTTDHRAGKFEAKFYDKILQEEIGGVKGHFGPINALAFNP 300

Query: 299 DGKRY 303
           DGK +
Sbjct: 301 DGKSF 305

Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome.
Arabidopsis thaliana (taxid: 3702)

>sp|B4Q354|EIF3I_DROSI Eukaryotic translation initiation factor 3 subunit I OS=Drosophila simulans GN=Trip1 PE=3 SV=1

 Score =  294 bits (752), Expect = 7e-79,   Method: Compositional matrix adjust.
 Identities = 145/316 (45%), Positives = 204/316 (64%), Gaps = 9/316 (2%)

Query: 1   MRPILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDV 60
           MRP++++GHER +T +KYN++GDLLFSC+KD  P VW++ NGERLGTY GH GAVWC DV
Sbjct: 1   MRPLMLQGHERSITQIKYNREGDLLFSCSKDQKPNVWYSLNGERLGTYDGHQGAVWCLDV 60

Query: 61  SRDSMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNS 120
             +S  LITG+ D TAK+W+VE G  + +    S  R+ +F+     A  +TD  M  + 
Sbjct: 61  DWESRKLITGAGDMTAKIWDVEYGTVIASIPTKSSVRTSNFSFSGNQAAYSTDKAMGQSC 120

Query: 121 AIHVKRIAR-DPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGK 179
            + +  +   D +    E  L +   + +I   +WGPL+ TII+  ++  + IWD   G+
Sbjct: 121 ELFLIDVRNADSSLSEQEPTLRIPMTESKITSMLWGPLDETIITGHDNGNIAIWDIRKGQ 180

Query: 180 LLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTERPVNAVT 239
             K  D  T H   I  +  + DG+ F+T S D +AKL+D+ +L  +KTY TERPVN+  
Sbjct: 181 --KVVDSGTDHSAGINDMQLSKDGTMFVTASRDTTAKLFDSESLMCLKTYKTERPVNSAA 238

Query: 240 MSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPD 299
           +SP++DHVVLGGGQDA  VTTT  +AGKF+++FF  I +EE   +KGHFGPIN+LAF+PD
Sbjct: 239 ISPIMDHVVLGGGQDAMEVTTTSTKAGKFDSRFFHLIYEEEFARLKGHFGPINSLAFHPD 298

Query: 300 GKRY------GFLLLQ 309
           GK Y      GF+ +Q
Sbjct: 299 GKSYASGGEDGFVRVQ 314

Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome.

Drosophila simulans (taxid: 7240)

>sp|B4I195|EIF3I_DROSE Eukaryotic translation initiation factor 3 subunit I OS=Drosophila sechellia GN=Trip1 PE=3 SV=1

 Score =  293 bits (751), Expect = 8e-79,   Method: Compositional matrix adjust.
 Identities = 145/316 (45%), Positives = 204/316 (64%), Gaps = 9/316 (2%)

Query: 1   MRPILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDV 60
           MRP++++GHER +T +KYN++GDLLFSC+KD  P VW++ NGERLGTY GH GAVWC DV
Sbjct: 1   MRPLMLQGHERSITQIKYNREGDLLFSCSKDQKPNVWYSLNGERLGTYDGHQGAVWCLDV 60

Query: 61  SRDSMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNS 120
             +S  LITG+ D TAK+W+VE G  + +    S  R+ +F+     A  +TD  M  + 
Sbjct: 61  DWESRKLITGAGDMTAKIWDVEYGTVIASIPTKSSVRTSNFSFSGNQAAYSTDKAMGQSC 120

Query: 121 AIHVKRIAR-DPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGK 179
            + +  +   D +    E  L +   + +I   +WGPL+ TII+  ++  + IWD   G+
Sbjct: 121 ELFLIDVRNADSSLSEQEPTLRIPMTESKITSMLWGPLDETIITGHDNGNIAIWDIRKGQ 180

Query: 180 LLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTERPVNAVT 239
             K  D  T H   I  +  + DG+ F+T S D +AKL+D+ +L  +KTY TERPVN+  
Sbjct: 181 --KVVDSGTDHSAGINDMQLSKDGTMFVTASKDTTAKLFDSESLMCLKTYKTERPVNSAA 238

Query: 240 MSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPD 299
           +SP++DHVVLGGGQDA  VTTT  +AGKF+++FF  I +EE   +KGHFGPIN+LAF+PD
Sbjct: 239 ISPIMDHVVLGGGQDAMEVTTTSTKAGKFDSRFFHLIYEEEFARLKGHFGPINSLAFHPD 298

Query: 300 GKRY------GFLLLQ 309
           GK Y      GF+ +Q
Sbjct: 299 GKSYASGGEDGFVRVQ 314

Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome.

Drosophila sechellia (taxid: 7238)

>sp|O02195|EIF3I_DROME Eukaryotic translation initiation factor 3 subunit I OS=Drosophila melanogaster GN=Trip1 PE=1 SV=1

 Score =  293 bits (751), Expect = 8e-79,   Method: Compositional matrix adjust.
 Identities = 145/316 (45%), Positives = 204/316 (64%), Gaps = 9/316 (2%)

Query: 1   MRPILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDV 60
           MRP++++GHER +T +KYN++GDLLFSC+KD  P VW++ NGERLGTY GH GAVWC DV
Sbjct: 1   MRPLMLQGHERSITQIKYNREGDLLFSCSKDQKPNVWYSLNGERLGTYDGHQGAVWCLDV 60

Query: 61  SRDSMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNS 120
             +S  LITG+ D TAK+W+VE G  + +    S  R+ +F+     A  +TD  M  + 
Sbjct: 61  DWESRKLITGAGDMTAKIWDVEYGTVIASIPTKSSVRTSNFSFSGNQAAYSTDKAMGQSC 120

Query: 121 AIHVKRIAR-DPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGK 179
            + +  +   D +    E  L +   + +I   +WGPL+ TII+  ++  + IWD   G+
Sbjct: 121 ELFLIDVRNADSSLSEQEPTLRIPMTESKITSMLWGPLDETIITGHDNGNIAIWDIRKGQ 180

Query: 180 LLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTERPVNAVT 239
             K  D  T H   I  +  + DG+ F+T S D +AKL+D+ +L  +KTY TERPVN+  
Sbjct: 181 --KVVDSGTDHSAGINDMQLSKDGTMFVTASKDTTAKLFDSESLMCLKTYKTERPVNSAA 238

Query: 240 MSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPD 299
           +SP++DHVVLGGGQDA  VTTT  +AGKF+++FF  I +EE   +KGHFGPIN+LAF+PD
Sbjct: 239 ISPIMDHVVLGGGQDAMEVTTTSTKAGKFDSRFFHLIYEEEFARLKGHFGPINSLAFHPD 298

Query: 300 GKRY------GFLLLQ 309
           GK Y      GF+ +Q
Sbjct: 299 GKSYASGGEDGFVRVQ 314

Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome.

Drosophila melanogaster (taxid: 7227)

>sp|B0XFT7|EIF3I_CULQU Eukaryotic translation initiation factor 3 subunit I OS=Culex quinquefasciatus GN=CPIJ018275 PE=3 SV=1

 Score =  293 bits (750), Expect = 1e-78,   Method: Compositional matrix adjust.
 Identities = 146/320 (45%), Positives = 208/320 (65%), Gaps = 13/320 (4%)

Query: 1   MRPILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDV 60
           M+P++++GHER +T +KYN++GDL+FS AKDH P+VWF+ NGERLGTY GH GAVWC DV
Sbjct: 1   MKPLMLQGHERAITQIKYNREGDLIFSTAKDHKPSVWFSLNGERLGTYNGHQGAVWCVDV 60

Query: 61  SRDSMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNS 120
              +  LITG+ D + KLW+VETG+ L T   +S AR+ +F+     A  +TD  M  NS
Sbjct: 61  DWTTTRLITGAGDMSTKLWDVETGSVLGTIPCNSAARTANFSFSGNQASYSTDKAMGHNS 120

Query: 121 AIHVKRIAR-DPADQGGESVLIL---KGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTE 176
            + +  +   D +      VL L   +  Q +I   +WG L+ T+I+  E+  +RIWD  
Sbjct: 121 ELFIIDVRNVDSSISSQSPVLKLTMNQSIQTKITSMLWGALDETVITGHENGSIRIWDLR 180

Query: 177 TGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTERPVN 236
           T K L   +  TG    I  +  +ADG+  ++ S D +AKL+D+ +L  +KTY TERPVN
Sbjct: 181 TAKELNSVNDHTG---VINDMQLSADGTMLVSASKDTTAKLFDSESLMCLKTYKTERPVN 237

Query: 237 AVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAF 296
           +  +SP+ +HVVLGGGQ+A  VTTT  ++GKF+++ F  + +EE   VKGHFGPIN+LAF
Sbjct: 238 SAAISPIHEHVVLGGGQEAMEVTTTSTKSGKFDSRLFHLVYEEEFARVKGHFGPINSLAF 297

Query: 297 NPDGKRY------GFLLLQI 310
           +PDGK Y      GF+ +Q+
Sbjct: 298 HPDGKSYATGGEDGFVRVQV 317

Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome.

Culex quinquefasciatus (taxid: 7176)

>sp|Q29L19|EIF3I_DROPS Eukaryotic translation initiation factor 3 subunit I OS=Drosophila pseudoobscura pseudoobscura GN=Trip1 PE=3 SV=2

 Score =  292 bits (748), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 149/318 (46%), Positives = 202/318 (63%), Gaps = 13/318 (4%)

Query: 1   MRPILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDV 60
           MRP++++GHER +T +KYN++GDLLFSC+KD  P VW++ NGERLGTY GH GAVWC DV
Sbjct: 1   MRPLMLQGHERSITQIKYNREGDLLFSCSKDQKPNVWYSLNGERLGTYDGHQGAVWCLDV 60

Query: 61  SRDSMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNS 120
             +S  LITG+ D T KLW+VE G  + +    S  R+ +F+     A  +TD  M  N 
Sbjct: 61  DWESRKLITGAGDMTTKLWDVEYGTIIASIPTKSSVRTSNFSFSGNQAAYSTDKAMGQNC 120

Query: 121 A---IHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTET 177
               I V+      ADQ     L +   + +I    WGPL+ TII+  ++  + IWD   
Sbjct: 121 ELFIIDVRNADSTLADQ--TPTLRIPMTESKITSMQWGPLDETIITGHDNGNIAIWDVRK 178

Query: 178 GKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTERPVNA 237
           G+  K  D  + H   I  +  + DG+ F+T S D +AKL+D+ +L  +KTY TERPVN+
Sbjct: 179 GQ--KVVDSGSDHAAGINDMQLSKDGTMFVTASRDTTAKLFDSESLMCLKTYKTERPVNS 236

Query: 238 VTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFN 297
             +SP+LDHVVLGGGQDA  VTTT  +AGKF+++FF  I +EE   +KGHFGPIN+LAF+
Sbjct: 237 AAISPILDHVVLGGGQDAMEVTTTSTKAGKFDSRFFHLIYEEEFARLKGHFGPINSLAFH 296

Query: 298 PDGKRY------GFLLLQ 309
           PDGK Y      GF+ +Q
Sbjct: 297 PDGKSYASGGEDGFVRVQ 314

Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome.

Drosophila pseudoobscura pseudoobscura (taxid: 46245)

>sp|B4GSH1|EIF3I_DROPE Eukaryotic translation initiation factor 3 subunit I OS=Drosophila persimilis GN=Trip1 PE=3 SV=1

 Score =  292 bits (748), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 149/318 (46%), Positives = 202/318 (63%), Gaps = 13/318 (4%)

Query: 1   MRPILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDV 60
           MRP++++GHER +T +KYN++GDLLFSC+KD  P VW++ NGERLGTY GH GAVWC DV
Sbjct: 1   MRPLMLQGHERSITQIKYNREGDLLFSCSKDQKPNVWYSLNGERLGTYDGHQGAVWCLDV 60

Query: 61  SRDSMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNS 120
             +S  LITG+ D T KLW+VE G  + +    S  R+ +F+     A  +TD  M  N 
Sbjct: 61  DWESRKLITGAGDMTTKLWDVEYGTIIASIPTKSSVRTSNFSFSGNQAAYSTDKAMGQNC 120

Query: 121 A---IHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTET 177
               I V+      ADQ     L +   + +I    WGPL+ TII+  ++  + IWD   
Sbjct: 121 ELFIIDVRNADSTLADQ--TPTLRIPMTESKITSMQWGPLDETIITGHDNGNIAIWDVRK 178

Query: 178 GKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTERPVNA 237
           G+  K  D  + H   I  +  + DG+ F+T S D +AKL+D+ +L  +KTY TERPVN+
Sbjct: 179 GQ--KVVDSGSDHAAGINDMQLSKDGTMFVTASRDTTAKLFDSESLMCLKTYKTERPVNS 236

Query: 238 VTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFN 297
             +SP+LDHVVLGGGQDA  VTTT  +AGKF+++FF  I +EE   +KGHFGPIN+LAF+
Sbjct: 237 AAISPILDHVVLGGGQDAMEVTTTSTKAGKFDSRFFHLIYEEEFARLKGHFGPINSLAFH 296

Query: 298 PDGKRY------GFLLLQ 309
           PDGK Y      GF+ +Q
Sbjct: 297 PDGKSYASGGEDGFVRVQ 314

Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome.

Drosophila persimilis (taxid: 7234)

>sp|B3N4C7|EIF3I_DROER Eukaryotic translation initiation factor 3 subunit I OS=Drosophila erecta GN=Trip1 PE=3 SV=1

 Score =  292 bits (747), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 144/316 (45%), Positives = 203/316 (64%), Gaps = 9/316 (2%)

Query: 1   MRPILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDV 60
           MRP++++GHER +T +KYN++GDLLFSC+KD  P VW++ NGERLGTY GH GAVWC DV
Sbjct: 1   MRPLMLQGHERSITQIKYNREGDLLFSCSKDQKPNVWYSLNGERLGTYDGHQGAVWCLDV 60

Query: 61  SRDSMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNS 120
             +S  LITG+ D T K+W+VE G  + +    S  R+ +F+     A  +TD  M  + 
Sbjct: 61  DWESRKLITGAGDMTTKIWDVEYGTVIASIPTKSSVRTSNFSFSGNQAAYSTDKAMGQSC 120

Query: 121 AIHVKRIAR-DPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGK 179
            + +  +   D +    E  L +   + +I   +WGPL+ TII+  ++  + IWD   G+
Sbjct: 121 ELFLIDVRNADSSLSEQEPTLRIPMTESKITSMLWGPLDETIITGHDNGNIAIWDIRKGQ 180

Query: 180 LLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTERPVNAVT 239
             K  D  T H   I  +  + DG+ F+T S D +AKL+D+ +L  +KTY TERPVN+  
Sbjct: 181 --KVVDSGTDHSAGINDMQLSKDGTMFVTASKDTTAKLFDSESLMCLKTYKTERPVNSAA 238

Query: 240 MSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPD 299
           +SP++DHVVLGGGQDA  VTTT  +AGKF+++FF  I +EE   +KGHFGPIN+LAF+PD
Sbjct: 239 ISPIMDHVVLGGGQDAMEVTTTSTKAGKFDSRFFHLIYEEEFARLKGHFGPINSLAFHPD 298

Query: 300 GKRY------GFLLLQ 309
           GK Y      GF+ +Q
Sbjct: 299 GKSYASGGEDGFVRVQ 314

Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome.

Drosophila erecta (taxid: 7220)

>sp|Q16K15|EIF3I_AEDAE Eukaryotic translation initiation factor 3 subunit I OS=Aedes aegypti GN=AAEL013144 PE=3 SV=1

 Score =  292 bits (747), Expect = 3e-78,   Method: Compositional matrix adjust.
 Identities = 145/318 (45%), Positives = 206/318 (64%), Gaps = 11/318 (3%)

Query: 1   MRPILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDV 60
           M+P++++GHER +T +KYN++GDL+FS AKDH P+VWF+ NGERLGT+ GH GAVWC DV
Sbjct: 1   MKPLMLQGHERAITQIKYNREGDLIFSTAKDHKPSVWFSLNGERLGTFNGHQGAVWCVDV 60

Query: 61  SRDSMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNS 120
              +  LITGS D + KLW+VETG+ L T   +S AR+V+F+     A  +TD  M  N 
Sbjct: 61  DWTTTRLITGSGDMSTKLWDVETGSVLGTIPCNSAARTVNFSYSGNQASYSTDKAMGHNC 120

Query: 121 AIHVKRIAR-DPADQGGESVLILK-GPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETG 178
            + +  +   D +      VL L    Q +I   +WG L+ T+I+  E+  +RIWD    
Sbjct: 121 ELFIIDVRNVDSSISNQSPVLKLTMNQQSKITSMLWGALDETVITGHENGSIRIWDLRAA 180

Query: 179 KLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTERPVNAV 238
           K L   +    H   I  +  ++DG+  ++ S D +AKL+D+ +L  +KTY TERPVN+ 
Sbjct: 181 KELNSVND---HTLNINDMQLSSDGTMLVSASKDATAKLFDSESLMCLKTYKTERPVNSA 237

Query: 239 TMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNP 298
            +SP+ +HVVLGGGQ+A  VTTT  +AGKF+++FF  + +EE   VKGHFGPIN+LAF+P
Sbjct: 238 AISPIHEHVVLGGGQEAMEVTTTSTKAGKFDSRFFHLVYEEEFARVKGHFGPINSLAFHP 297

Query: 299 DGKRY------GFLLLQI 310
           DGK Y      GF+ +Q+
Sbjct: 298 DGKSYATGGEDGFVRVQV 315

Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome.

Aedes aegypti (taxid: 7159)

>sp|B4JB43|EIF3I_DROGR Eukaryotic translation initiation factor 3 subunit I OS=Drosophila grimshawi GN=Trip1 PE=3 SV=1

 Score =  289 bits (739), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 145/316 (45%), Positives = 198/316 (62%), Gaps = 9/316 (2%)

Query: 1   MRPILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDV 60
           MRP++++GHER +T +KYN++GDLLFS +KD  P VW++ NGERLGTY GH GAVWC DV
Sbjct: 1   MRPLMLQGHERSITQIKYNREGDLLFSSSKDQKPNVWYSLNGERLGTYDGHQGAVWCLDV 60

Query: 61  SRDSMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNS 120
             +S  LITG+ D T KLW+VE G  + +    S  R+ +F+     A  +TD  M  N 
Sbjct: 61  DWESRKLITGAGDMTTKLWDVEYGTVIASIATKSSVRTSNFSFSGNQAAYSTDKAMGQNC 120

Query: 121 AIHVKRIAR-DPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGK 179
            + +  +   D      E  L +   + +I    WGPL+ TII+  ++  + IWD   G+
Sbjct: 121 ELFIIDVRNADSTLSEQEPTLRIPMVESKITSMQWGPLDETIITGHDNGNIAIWDVRKGQ 180

Query: 180 LLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTERPVNAVT 239
             K  D    H   I  +  + DG+ F+T S D +AKL+DA +L  +KTY TERPVN+  
Sbjct: 181 --KVVDSGVDHAAGINDMQLSKDGTMFVTASKDNTAKLFDAESLMCLKTYKTERPVNSAA 238

Query: 240 MSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPD 299
           +SP+ DHVVLGGGQDA  VTTT  +AGKF+++FF  I +EE   +KGHFGPIN+LAF+PD
Sbjct: 239 ISPIFDHVVLGGGQDAMEVTTTSTKAGKFDSRFFHLIYEEEFARLKGHFGPINSLAFHPD 298

Query: 300 GKRY------GFLLLQ 309
           GK Y      GF+ +Q
Sbjct: 299 GKSYASGGEDGFVRVQ 314

Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome.

Drosophila grimshawi (taxid: 7222)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	313
356497716	326	PREDICTED: eukaryotic translation initia	0.904	0.868	0.910	1e-164
225424530	326	PREDICTED: eukaryotic translation initia	0.904	0.868	0.910	1e-164
449437818	326	PREDICTED: eukaryotic translation initia	0.904	0.868	0.904	1e-164
13936812	326	TGF-beta receptor-interacting protein 1	0.904	0.868	0.894	1e-162
255561759	326	eukaryotic translation initiation factor	0.904	0.868	0.894	1e-162
357453275	321	Eukaryotic translation initiation factor	0.888	0.866	0.899	1e-160
356531718	326	PREDICTED: eukaryotic translation initia	0.904	0.868	0.877	1e-160
356544180	326	PREDICTED: eukaryotic translation initia	0.904	0.868	0.881	1e-159
224111384	326	predicted protein [Populus trichocarpa]	0.904	0.868	0.861	1e-155
224099627	326	predicted protein [Populus trichocarpa]	0.968	0.929	0.851	1e-153

>gi|356497716|ref|XP_003517705.1| PREDICTED: eukaryotic translation initiation factor 3 subunit I-like [Glycine max]

 Score =  583 bits (1503), Expect = e-164,   Method: Compositional matrix adjust.
 Identities = 276/303 (91%), Positives = 292/303 (96%)

Query: 1   MRPILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDV 60
           MRPILMKGHERPLT+LKYN+DGDLLFSCAKDH PTVWFADNGERLGTYRGHNGAVWCCDV
Sbjct: 1   MRPILMKGHERPLTFLKYNRDGDLLFSCAKDHNPTVWFADNGERLGTYRGHNGAVWCCDV 60

Query: 61  SRDSMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNS 120
           SRDS  LITGSADQTAKLWNV+TG QLFTFNFDSPARSVDFAVGDKLAVITTDPFMEL S
Sbjct: 61  SRDSGRLITGSADQTAKLWNVQTGQQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELPS 120

Query: 121 AIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKL 180
           AIHVKRIA DPA+Q GESVL++KGPQGRINRA+WGPLNRTIISAGEDA++RIWD+ETGKL
Sbjct: 121 AIHVKRIANDPAEQTGESVLLIKGPQGRINRAIWGPLNRTIISAGEDAVIRIWDSETGKL 180

Query: 181 LKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTERPVNAVTM 240
           LKESDKE+GHKKT+TSLAK+ADGSHFLTGSLDKSA+LWD RTL LIKTYVTERPVNAV M
Sbjct: 181 LKESDKESGHKKTVTSLAKSADGSHFLTGSLDKSARLWDTRTLTLIKTYVTERPVNAVAM 240

Query: 241 SPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDG 300
           SPLLDHVVLGGGQDASAVTTTDHRAGKFEAKF+DKILQEEIGGVKGHFGPINALAFNPDG
Sbjct: 241 SPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFYDKILQEEIGGVKGHFGPINALAFNPDG 300

Query: 301 KRY 303
           K +
Sbjct: 301 KSF 303

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225424530|ref|XP_002285281.1| PREDICTED: eukaryotic translation initiation factor 3 subunit I [Vitis vinifera] gi|147853445|emb|CAN80198.1| hypothetical protein VITISV_030908 [Vitis vinifera] gi|297737552|emb|CBI26753.3| unnamed protein product [Vitis vinifera]

 Score =  583 bits (1503), Expect = e-164,   Method: Compositional matrix adjust.
 Identities = 276/303 (91%), Positives = 291/303 (96%)

Query: 1   MRPILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDV 60
           MRPILMKGHERPLT+LKYN+DGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVW CDV
Sbjct: 1   MRPILMKGHERPLTFLKYNRDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWTCDV 60

Query: 61  SRDSMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNS 120
           SRDSM LITGSADQT KLWNVETGAQLFTFNFDSPARSVDF+VGDKLAVITTDPFMEL S
Sbjct: 61  SRDSMRLITGSADQTVKLWNVETGAQLFTFNFDSPARSVDFSVGDKLAVITTDPFMELTS 120

Query: 121 AIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKL 180
           AIHVKRIARDP+ Q  ES L++KGPQGRINRA+WGPLNRTIISAGEDAIVRIWD+ETGKL
Sbjct: 121 AIHVKRIARDPSQQTAESALVIKGPQGRINRAIWGPLNRTIISAGEDAIVRIWDSETGKL 180

Query: 181 LKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTERPVNAVTM 240
           LKESDKETGHKKT+TSL+KA DGSHF+TGSLDKSAKLWD+RTL LIKTY+TERPVNAVTM
Sbjct: 181 LKESDKETGHKKTVTSLSKAVDGSHFVTGSLDKSAKLWDSRTLTLIKTYLTERPVNAVTM 240

Query: 241 SPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDG 300
           SPLLDHVVLGGGQDAS VTTTDHRAGKFEAKF+DKILQEEIGGVKGHFGPINALAFNPDG
Sbjct: 241 SPLLDHVVLGGGQDASHVTTTDHRAGKFEAKFYDKILQEEIGGVKGHFGPINALAFNPDG 300

Query: 301 KRY 303
           K +
Sbjct: 301 KSF 303

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449437818|ref|XP_004136687.1| PREDICTED: eukaryotic translation initiation factor 3 subunit I-like [Cucumis sativus] gi|449494685|ref|XP_004159618.1| PREDICTED: eukaryotic translation initiation factor 3 subunit I-like [Cucumis sativus]

 Score =  583 bits (1502), Expect = e-164,   Method: Compositional matrix adjust.
 Identities = 274/303 (90%), Positives = 293/303 (96%)

Query: 1   MRPILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDV 60
           MRPILMKGHERPLT+LKYN+DGDLLFSCAKDH PTVW+ADNGERLGTYRGHNGAVWCCDV
Sbjct: 1   MRPILMKGHERPLTFLKYNRDGDLLFSCAKDHNPTVWYADNGERLGTYRGHNGAVWCCDV 60

Query: 61  SRDSMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNS 120
           SRDSM LITGSADQTAKLWNV+TG QLF+FNFDSPAR+VDF+VGDKLAVITTDPFMEL S
Sbjct: 61  SRDSMRLITGSADQTAKLWNVQTGQQLFSFNFDSPARAVDFSVGDKLAVITTDPFMELPS 120

Query: 121 AIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKL 180
           AIHVKRIARDP++Q GESVL+LKGPQGRINRAVWGPLN+TIISAGEDA+VRIWD+ETGKL
Sbjct: 121 AIHVKRIARDPSEQTGESVLLLKGPQGRINRAVWGPLNKTIISAGEDAVVRIWDSETGKL 180

Query: 181 LKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTERPVNAVTM 240
           LKESDKE GHKKT+TSL K++DGSHF+TGSLDKSAKLWD RTL LIKTYVTERPVNAVTM
Sbjct: 181 LKESDKEIGHKKTVTSLTKSSDGSHFITGSLDKSAKLWDTRTLTLIKTYVTERPVNAVTM 240

Query: 241 SPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDG 300
           SPLLDHVVLGGGQDASAVTTTDHRAGKFEAKF+DKILQEEIGGVKGHFGPINALAFNPDG
Sbjct: 241 SPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFYDKILQEEIGGVKGHFGPINALAFNPDG 300

Query: 301 KRY 303
           K +
Sbjct: 301 KSF 303

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|13936812|gb|AAK49947.1|AF335551_1 TGF-beta receptor-interacting protein 1 [Phaseolus vulgaris]

 Score =  577 bits (1486), Expect = e-162,   Method: Compositional matrix adjust.
 Identities = 271/303 (89%), Positives = 291/303 (96%)

Query: 1   MRPILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDV 60
           MRPILMKGHERPLT+LKYN+DGDLLFSCAKDH PTVWFADNGERLGTYRGHNGAVWCCDV
Sbjct: 1   MRPILMKGHERPLTFLKYNRDGDLLFSCAKDHNPTVWFADNGERLGTYRGHNGAVWCCDV 60

Query: 61  SRDSMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNS 120
           SRDS  LITGSADQTAKLWNV+TG QLFTFNFDSPARSVDF+VGDKLAVITTDPFMEL S
Sbjct: 61  SRDSGRLITGSADQTAKLWNVQTGQQLFTFNFDSPARSVDFSVGDKLAVITTDPFMELPS 120

Query: 121 AIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKL 180
           AIHVKRIA DP +Q G+SV+++KGPQGRINRA+WGPLNRTIISAGEDA++RIWD+ETGKL
Sbjct: 121 AIHVKRIANDPTEQTGDSVVLIKGPQGRINRAIWGPLNRTIISAGEDAVIRIWDSETGKL 180

Query: 181 LKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTERPVNAVTM 240
           +KESDKE+GHKKT+TSLAK+ADGSHFLTGSLDKSA+LWD RTL LIKTYVTERPVNAV M
Sbjct: 181 IKESDKESGHKKTVTSLAKSADGSHFLTGSLDKSARLWDTRTLTLIKTYVTERPVNAVAM 240

Query: 241 SPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDG 300
           SPLLDHVVLGGGQDASAVTTTDHRAGKFEAKF+DKILQEEIGGVKGHFGPINALAFNPDG
Sbjct: 241 SPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFYDKILQEEIGGVKGHFGPINALAFNPDG 300

Query: 301 KRY 303
           K +
Sbjct: 301 KSF 303

Source: Phaseolus vulgaris

Species: Phaseolus vulgaris

Genus: Phaseolus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255561759|ref|XP_002521889.1| eukaryotic translation initiation factor 3 subunit, putative [Ricinus communis] gi|223538927|gb|EEF40525.1| eukaryotic translation initiation factor 3 subunit, putative [Ricinus communis]

 Score =  576 bits (1485), Expect = e-162,   Method: Compositional matrix adjust.
 Identities = 271/303 (89%), Positives = 292/303 (96%)

Query: 1   MRPILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDV 60
           MRPILMKGHERPLT+LKYNK+GDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDV
Sbjct: 1   MRPILMKGHERPLTFLKYNKEGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDV 60

Query: 61  SRDSMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNS 120
           SRDSM LITGSADQTAKLW+V+TG QL++FNFDSPAR+VD +VGDKLAVITTDPFMEL S
Sbjct: 61  SRDSMRLITGSADQTAKLWDVKTGTQLYSFNFDSPARAVDLSVGDKLAVITTDPFMELPS 120

Query: 121 AIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKL 180
           AIHVKRIARDP +Q GESVL+LKGPQGRINRAVWGPLN+TI+SAGEDA++RIWD+ETGKL
Sbjct: 121 AIHVKRIARDPDNQTGESVLVLKGPQGRINRAVWGPLNKTILSAGEDAVIRIWDSETGKL 180

Query: 181 LKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTERPVNAVTM 240
           LKESD+E GHKKTITSL K++DGSHFLTGSLDKSAKLWD RTL LIKTYVTERPVNAVTM
Sbjct: 181 LKESDREIGHKKTITSLTKSSDGSHFLTGSLDKSAKLWDIRTLTLIKTYVTERPVNAVTM 240

Query: 241 SPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDG 300
           SPLLDHVVLGGGQDASAVTTTDHRAGKFEAKF+DKILQEE+GGVKGHFGPINALAFNPDG
Sbjct: 241 SPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFYDKILQEEVGGVKGHFGPINALAFNPDG 300

Query: 301 KRY 303
           K +
Sbjct: 301 KSF 303

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357453275|ref|XP_003596914.1| Eukaryotic translation initiation factor 3 subunit I [Medicago truncatula] gi|355485962|gb|AES67165.1| Eukaryotic translation initiation factor 3 subunit I [Medicago truncatula]

 Score =  571 bits (1471), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 268/298 (89%), Positives = 288/298 (96%)

Query: 6   MKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSM 65
           MKGHERPLT+LKYN+DGDLLFSCAKDH PTVWFADNGERLGTYRGHNGAVWCCDVSRDS 
Sbjct: 1   MKGHERPLTFLKYNRDGDLLFSCAKDHNPTVWFADNGERLGTYRGHNGAVWCCDVSRDSG 60

Query: 66  TLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVK 125
            LITGSADQTAKLWNV+TG QLFTFNFDSPARSVDF+VGDKLAVITTDPFMEL+SAIHVK
Sbjct: 61  RLITGSADQTAKLWNVQTGQQLFTFNFDSPARSVDFSVGDKLAVITTDPFMELSSAIHVK 120

Query: 126 RIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESD 185
           RIA+DP+DQ  ES+L++KGPQGRINRA+WGPLN+TIISAGEDA++RIWD+ETGKLLKESD
Sbjct: 121 RIAKDPSDQTAESLLVIKGPQGRINRAIWGPLNKTIISAGEDAVIRIWDSETGKLLKESD 180

Query: 186 KETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTERPVNAVTMSPLLD 245
           KE GHKKTITSLAK+ADGSHF TGSLDKSAK+WD+RTL L+KTYVTERPVNAVTMSPLLD
Sbjct: 181 KELGHKKTITSLAKSADGSHFCTGSLDKSAKIWDSRTLSLVKTYVTERPVNAVTMSPLLD 240

Query: 246 HVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKRY 303
           HVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGK +
Sbjct: 241 HVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKSF 298

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356531718|ref|XP_003534423.1| PREDICTED: eukaryotic translation initiation factor 3 subunit I-like [Glycine max]

 Score =  568 bits (1465), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 266/303 (87%), Positives = 291/303 (96%)

Query: 1   MRPILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDV 60
           MRPILMKGHERPLT+LKYN+DGDLLFSCAKDH PTVWFADNGERLGTYRGHNGAVW CDV
Sbjct: 1   MRPILMKGHERPLTFLKYNRDGDLLFSCAKDHNPTVWFADNGERLGTYRGHNGAVWTCDV 60

Query: 61  SRDSMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNS 120
           SRDS+ LITGSADQTAKLW+V++G QL+TFNFDSPARSVDF+VGD+LAVITTDPFMEL+S
Sbjct: 61  SRDSVRLITGSADQTAKLWDVQSGLQLYTFNFDSPARSVDFSVGDRLAVITTDPFMELSS 120

Query: 121 AIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKL 180
           AIHVKRIA DP +Q GES+L++KGP GRINRA+WGPLN TIISAGEDA++RIWD+ETGKL
Sbjct: 121 AIHVKRIADDPTEQSGESLLLIKGPLGRINRAIWGPLNSTIISAGEDAVIRIWDSETGKL 180

Query: 181 LKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTERPVNAVTM 240
           LKESDKE+GHKKT+TSLAK+ADGSHFLTGSLDKSA+LWD R+L LIKTYVTERPVNAVTM
Sbjct: 181 LKESDKESGHKKTVTSLAKSADGSHFLTGSLDKSARLWDTRSLTLIKTYVTERPVNAVTM 240

Query: 241 SPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDG 300
           SPLLDHVV+GGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDG
Sbjct: 241 SPLLDHVVIGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDG 300

Query: 301 KRY 303
           K +
Sbjct: 301 KSF 303

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356544180|ref|XP_003540532.1| PREDICTED: eukaryotic translation initiation factor 3 subunit I-like [Glycine max] gi|255646294|gb|ACU23631.1| unknown [Glycine max]

 Score =  567 bits (1462), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 267/303 (88%), Positives = 289/303 (95%)

Query: 1   MRPILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDV 60
           MRPILMKGHERPLT+LKYN+DGDLLFSCAKDH PTVWFADNGERLGTYRGHNGAVW CDV
Sbjct: 1   MRPILMKGHERPLTFLKYNRDGDLLFSCAKDHNPTVWFADNGERLGTYRGHNGAVWTCDV 60

Query: 61  SRDSMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNS 120
           SRDS  LITGSADQTAKLW+V++G QL+TFNFDSPARSVDF+VGDKLAVITTDPFMEL S
Sbjct: 61  SRDSARLITGSADQTAKLWDVQSGLQLYTFNFDSPARSVDFSVGDKLAVITTDPFMELPS 120

Query: 121 AIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKL 180
           AIHVKRIA DP+ Q GESVL++KGPQGRINRA+WGPLN TIISAGEDA++RIWD+ETGKL
Sbjct: 121 AIHVKRIANDPSQQIGESVLLIKGPQGRINRAIWGPLNTTIISAGEDAVIRIWDSETGKL 180

Query: 181 LKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTERPVNAVTM 240
           L+ESDKE+GHKKT+TSLAK+AD SHFLTGSLDKSA+LWD R+L LIKTYVTERPVNAVTM
Sbjct: 181 LQESDKESGHKKTVTSLAKSADDSHFLTGSLDKSARLWDTRSLTLIKTYVTERPVNAVTM 240

Query: 241 SPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDG 300
           SPLLDHVV+GGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDG
Sbjct: 241 SPLLDHVVIGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDG 300

Query: 301 KRY 303
           K +
Sbjct: 301 KSF 303

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224111384|ref|XP_002315834.1| predicted protein [Populus trichocarpa] gi|118484697|gb|ABK94219.1| unknown [Populus trichocarpa] gi|222864874|gb|EEF02005.1| predicted protein [Populus trichocarpa]

 Score =  555 bits (1429), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 261/303 (86%), Positives = 281/303 (92%)

Query: 1   MRPILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDV 60
           MRPILMKGHERPLT+LKYN++GDLLFSCAKDH PTVWFADNGERLGTYRGHNGAVWCCDV
Sbjct: 1   MRPILMKGHERPLTFLKYNREGDLLFSCAKDHNPTVWFADNGERLGTYRGHNGAVWCCDV 60

Query: 61  SRDSMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNS 120
           SRDSM LIT SADQ+ KLWNV+TGAQLFTFNF+SPARSVDF+VGDKLAVITTDPFM + S
Sbjct: 61  SRDSMLLITASADQSVKLWNVQTGAQLFTFNFNSPARSVDFSVGDKLAVITTDPFMGVTS 120

Query: 121 AIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKL 180
           AI+VK IA DP+ Q GESVL + GP GRINRAVWG LN+TIISAGED++VRIWD+ETGKL
Sbjct: 121 AINVKSIAEDPSQQSGESVLTITGPTGRINRAVWGSLNKTIISAGEDSVVRIWDSETGKL 180

Query: 181 LKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTERPVNAVTM 240
           LKESD E GHKK ITSL K+ADGSHFLTGSLDKSAKLWD RTL LIKTY TERPVNAVTM
Sbjct: 181 LKESDPEVGHKKPITSLTKSADGSHFLTGSLDKSAKLWDTRTLTLIKTYATERPVNAVTM 240

Query: 241 SPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDG 300
           SPLLDHVVLGGGQDAS+VTTTDHRAGKFEAKF+DK+LQEEIGGVKGHFGPINALAFNPDG
Sbjct: 241 SPLLDHVVLGGGQDASSVTTTDHRAGKFEAKFYDKVLQEEIGGVKGHFGPINALAFNPDG 300

Query: 301 KRY 303
           K +
Sbjct: 301 KSF 303

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224099627|ref|XP_002311556.1| predicted protein [Populus trichocarpa] gi|222851376|gb|EEE88923.1| predicted protein [Populus trichocarpa]

 Score =  548 bits (1412), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 258/303 (85%), Positives = 281/303 (92%)

Query: 1   MRPILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDV 60
           MRPILMKGHERPLT+LKYN++GDLLFSCAKDH PTVWFADNGERLGTYRGHNGAVWCCDV
Sbjct: 1   MRPILMKGHERPLTFLKYNREGDLLFSCAKDHNPTVWFADNGERLGTYRGHNGAVWCCDV 60

Query: 61  SRDSMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNS 120
           SRDSM LIT SADQ+ KLWNV+TGAQL+TF+F+SPARSVDF+VGDKLAVITTDPFM + S
Sbjct: 61  SRDSMQLITASADQSVKLWNVQTGAQLYTFSFNSPARSVDFSVGDKLAVITTDPFMGVTS 120

Query: 121 AIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKL 180
           AI+VKRIA DP+ Q GESVL + GP GRINRAVWGPLNRTIISAGED +VRIWD+ETGKL
Sbjct: 121 AINVKRIADDPSQQSGESVLTITGPAGRINRAVWGPLNRTIISAGEDCVVRIWDSETGKL 180

Query: 181 LKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTERPVNAVTM 240
           LKES+ E GHKK I+SL K+ADGSHFLTGSLDKSAK+ D+RTL LIK Y TERPVNAVTM
Sbjct: 181 LKESEPEVGHKKPISSLTKSADGSHFLTGSLDKSAKVGDSRTLTLIKNYTTERPVNAVTM 240

Query: 241 SPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDG 300
           SPLLDHVVLGGGQDAS+VTTTDHRAGKFEAKF+DKILQEEIGGVKGHFGPINALAFNPDG
Sbjct: 241 SPLLDHVVLGGGQDASSVTTTDHRAGKFEAKFYDKILQEEIGGVKGHFGPINALAFNPDG 300

Query: 301 KRY 303
           K +
Sbjct: 301 KSF 303

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	313
TAIR|locus:2063009	328	TRIP-1 "AT2G46280" [Arabidopsi	0.968	0.923	0.803	2.9e-135
TAIR|locus:2062994	355	AT2G46290 "AT2G46290" [Arabido	0.968	0.853	0.8	1.4e-133
FB|FBgn0015834	326	Trip1 "Trip1" [Drosophila mela	0.961	0.923	0.467	1.1e-73
ZFIN|ZDB-GENE-040426-1922	325	eif3i "eukaryotic translation	0.955	0.92	0.453	9.9e-71
UNIPROTKB|Q5EBE8	325	eif3i "Eukaryotic translation	0.955	0.92	0.470	1.3e-70
UNIPROTKB|Q66J51	325	eif3i "Eukaryotic translation	0.955	0.92	0.467	2.1e-70
UNIPROTKB|E1C6T8	325	EIF3I "Uncharacterized protein	0.955	0.92	0.467	3.3e-70
UNIPROTKB|B5FZ19	325	EIF3I "Eukaryotic translation	0.955	0.92	0.460	1.8e-69
UNIPROTKB|Q13347	325	EIF3I "Eukaryotic translation	0.955	0.92	0.463	8e-69
UNIPROTKB|Q5E966	325	EIF3I "Eukaryotic translation	0.955	0.92	0.463	1e-68

TAIR|locus:2063009 TRIP-1 "AT2G46280" [Arabidopsis thaliana (taxid:3702)]

 Score = 1325 (471.5 bits), Expect = 2.9e-135, P = 2.9e-135
 Identities = 245/305 (80%), Positives = 275/305 (90%)

Query:     1 MRPILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDV 60
             MRPILMKGHERPLT+L+YN++GDLLFSCAKDHTPT+WFADNGERLGTYRGHNGAVWCCDV
Sbjct:     1 MRPILMKGHERPLTFLRYNREGDLLFSCAKDHTPTLWFADNGERLGTYRGHNGAVWCCDV 60

Query:    61 SRDSMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNS 120
             SRDS  LITGSADQTAKLW+V++G +LFTF F++P RSVDFAVGD+LAVITTD F++  +
Sbjct:    61 SRDSSRLITGSADQTAKLWDVKSGKELFTFKFNAPTRSVDFAVGDRLAVITTDHFVDRTA 120

Query:   121 AIHVKRIARDPADQGGESVLILKGPQG--RINRAVWGPLNRTIISAGEDAIVRIWDTETG 178
             AIHVKRIA DP +Q  ESVL+L  P G  RINRAVWGPLN+TI+S GED ++RIWD ETG
Sbjct:   121 AIHVKRIAEDPEEQDAESVLVLHCPDGKKRINRAVWGPLNQTIVSGGEDKVIRIWDAETG 180

Query:   179 KLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTERPVNAV 238
             KLLK+SD+E GHKK ITSL KAAD SHFLTGSLDK+AKLWD RTL L+KTY T  PVNAV
Sbjct:   181 KLLKQSDEEVGHKKDITSLCKAADDSHFLTGSLDKTAKLWDMRTLTLLKTYTTVVPVNAV 240

Query:   239 TMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNP 298
             ++SPLL+HVVLGGGQDASAVTTTDHRAGKFEAKF+DKILQEEIGGVKGHFGPINALAFNP
Sbjct:   241 SLSPLLNHVVLGGGQDASAVTTTDHRAGKFEAKFYDKILQEEIGGVKGHFGPINALAFNP 300

Query:   299 DGKRY 303
             DGK +
Sbjct:   301 DGKSF 305

GO:0000166 "nucleotide binding" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISM

GO:0005515 "protein binding" evidence=IPI

GO:0046686 "response to cadmium ion" evidence=IEP

GO:0009651 "response to salt stress" evidence=IEP

GO:0080008 "Cul4-RING ubiquitin ligase complex" evidence=IPI

GO:0005829 "cytosol" evidence=IDA

TAIR|locus:2062994 AT2G46290 "AT2G46290" [Arabidopsis thaliana (taxid:3702)]

 Score = 1309 (465.8 bits), Expect = 1.4e-133, P = 1.4e-133
 Identities = 244/305 (80%), Positives = 273/305 (89%)

Query:     1 MRPILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDV 60
             MRPILMKGHERPLT+L+YN++GDLLFSCAKDHTPTVWFADNGERLGTYRGH+GAVWCCD+
Sbjct:    28 MRPILMKGHERPLTFLRYNRNGDLLFSCAKDHTPTVWFADNGERLGTYRGHSGAVWCCDI 87

Query:    61 SRDSMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNS 120
             SRDS  LITGSADQTAKLW+V++G +LFTF F +PARSVDF+VGD LAVITTD F+  +S
Sbjct:    88 SRDSSRLITGSADQTAKLWDVKSGKELFTFKFGAPARSVDFSVGDHLAVITTDHFVGTSS 147

Query:   121 AIHVKRIARDPADQGGESVLILKGPQGR--INRAVWGPLNRTIISAGEDAIVRIWDTETG 178
             AIHVKRIA DP DQ G+SVL+L+ P G+  INRAVWGPLN+TI+S GEDA +RIWD ETG
Sbjct:   148 AIHVKRIAEDPEDQVGDSVLVLQSPDGKKKINRAVWGPLNQTIVSGGEDAAIRIWDAETG 207

Query:   179 KLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTERPVNAV 238
             KLLK+SD+E GHK+ ITSL KAAD SHFLTGS DK+AKLWD RTL LIKTY T  PVNAV
Sbjct:   208 KLLKQSDEEVGHKEAITSLCKAADDSHFLTGSHDKTAKLWDMRTLTLIKTYTTVVPVNAV 267

Query:   239 TMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNP 298
              MSPLL+HVVLGGGQDASAVTTTDHRAGKFEAKF+D ILQEEIGGVKGHFGPINALAF+P
Sbjct:   268 AMSPLLNHVVLGGGQDASAVTTTDHRAGKFEAKFYDTILQEEIGGVKGHFGPINALAFSP 327

Query:   299 DGKRY 303
             DGK +
Sbjct:   328 DGKSF 332

GO:0000166 "nucleotide binding" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISM

GO:0080008 "Cul4-RING ubiquitin ligase complex" evidence=ISS

GO:0009506 "plasmodesma" evidence=IDA

FB|FBgn0015834 Trip1 "Trip1" [Drosophila melanogaster (taxid:7227)]

 Score = 744 (267.0 bits), Expect = 1.1e-73, P = 1.1e-73
 Identities = 142/304 (46%), Positives = 199/304 (65%)

Query:     1 MRPILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDV 60
             MRP++++GHER +T +KYN++GDLLFSC+KD  P VW++ NGERLGTY GH GAVWC DV
Sbjct:     1 MRPLMLQGHERSITQIKYNREGDLLFSCSKDQKPNVWYSLNGERLGTYDGHQGAVWCLDV 60

Query:    61 SRDSMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNS 120
               +S  LITG+ D TAK+W+VE G  + +    S  R+ +F+     A  +TD  M  + 
Sbjct:    61 DWESRKLITGAGDMTAKIWDVEYGTVIASIPTKSSVRTSNFSFSGNQAAYSTDKAMGQSC 120

Query:   121 AIHVKRIAR-DPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGK 179
              + +  +   D +    E  L +   + +I   +WGPL+ TII+  ++  + IWD   G+
Sbjct:   121 ELFLIDVRNADSSLSEQEPTLRIPMTESKITSMLWGPLDETIITGHDNGNIAIWDIRKGQ 180

Query:   180 LLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTERPVNAVT 239
               K  D  T H   I  +  + DG+ F+T S D +AKL+D+ +L  +KTY TERPVN+  
Sbjct:   181 --KVVDSGTDHSAGINDMQLSKDGTMFVTASKDTTAKLFDSESLMCLKTYKTERPVNSAA 238

Query:   240 MSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPD 299
             +SP++DHVVLGGGQDA  VTTT  +AGKF+++FF  I +EE   +KGHFGPIN+LAF+PD
Sbjct:   239 ISPIMDHVVLGGGQDAMEVTTTSTKAGKFDSRFFHLIYEEEFARLKGHFGPINSLAFHPD 298

Query:   300 GKRY 303
             GK Y
Sbjct:   299 GKSY 302

GO:0003743 "translation initiation factor activity" evidence=ISS;NAS

GO:0006412 "translation" evidence=ISS;NAS

GO:0005852 "eukaryotic translation initiation factor 3 complex" evidence=ISS;NAS

GO:0005829 "cytosol" evidence=NAS

GO:0006413 "translational initiation" evidence=ISS

GO:0005875 "microtubule associated complex" evidence=IDA

ZFIN|ZDB-GENE-040426-1922 eif3i "eukaryotic translation initiation factor 3, subunit I" [Danio rerio (taxid:7955)]

 Score = 716 (257.1 bits), Expect = 9.9e-71, P = 9.9e-71
 Identities = 138/304 (45%), Positives = 198/304 (65%)

Query:     1 MRPILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDV 60
             M+PIL++GHER +T +KYN++GDLLFS AKD    VW++ NGERLGTY GH GAVWC DV
Sbjct:     1 MKPILLQGHERSITQIKYNREGDLLFSVAKDPIANVWYSVNGERLGTYNGHTGAVWCVDV 60

Query:    61 SRDSMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNS 120
               D+  ++TGSAD + +LW+ ETG QL      S  R+  F     + + +TD  M    
Sbjct:    61 DWDTKNVLTGSADNSCRLWDCETGKQLALLETSSAVRTCGFDFSGNIIMFSTDKQMGYQC 120

Query:   121 AIHVKRIARDPAD-QGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGK 179
              ++   + RDP   +  +  + +   + +I  AVWGPL   +I+  E+  +  +  ++G+
Sbjct:   121 FLNYYDL-RDPQQIEDNQPYISVPCSESKITSAVWGPLGEFVIAGHENGEINQFSAKSGE 179

Query:   180 LLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTERPVNAVT 239
             +LK++ KE  H K I  +  + D +  ++ S D +AK++D+ TLE +KT+ TERPVN+  
Sbjct:   180 VLKKA-KE--HTKQINDIQSSVDLTMIISASKDCTAKMFDSSTLEHVKTFKTERPVNSAA 236

Query:   240 MSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPD 299
             +SP++DHVV+GGGQ+A  VTTT  R GKFEA+FF    +EE G VKGHFGPIN +AF+PD
Sbjct:   237 ISPIMDHVVMGGGQEAMEVTTTSTRIGKFEARFFHAAYEEEFGRVKGHFGPINCVAFHPD 296

Query:   300 GKRY 303
             GK Y
Sbjct:   297 GKSY 300

GO:0005852 "eukaryotic translation initiation factor 3 complex" evidence=ISS

GO:0003743 "translation initiation factor activity" evidence=IEA;ISS

GO:0006413 "translational initiation" evidence=IEA;ISS

GO:0005737 "cytoplasm" evidence=IEA

GO:0006412 "translation" evidence=IEA

UNIPROTKB|Q5EBE8 eif3i "Eukaryotic translation initiation factor 3 subunit I" [Xenopus (Silurana) tropicalis (taxid:8364)]

 Score = 715 (256.8 bits), Expect = 1.3e-70, P = 1.3e-70
 Identities = 143/304 (47%), Positives = 197/304 (64%)

Query:     1 MRPILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDV 60
             MRPIL++GHER +T +KYN+DGDLLF+ AKD    VW++ NGERLGTY GH GAVWC DV
Sbjct:     1 MRPILLQGHERSITQIKYNRDGDLLFTVAKDPVVNVWYSVNGERLGTYSGHTGAVWCVDV 60

Query:    61 SRDSMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNS 120
               D+  +++GSAD + +LW+ ETG QL     +S  R+  F  G  + + +TD  M    
Sbjct:    61 DWDTRHVLSGSADNSCRLWDCETGKQLALLETNSAVRTCGFDFGGNIIMFSTDKQMGYQC 120

Query:   121 AIHVKRIARDPAD-QGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGK 179
              +    + RDP   +  E  + +   + +I  AVWGPL   II+  E+  +  +  ++G+
Sbjct:   121 FVSFIDL-RDPTQIEDNEPYMKIPCSESKITSAVWGPLGENIIAGHENGELNQYSAKSGE 179

Query:   180 LLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTERPVNAVT 239
             ++  S KE  H K I  +  + D + F+T S D ++KL+D+ +LE  KT+ TERPVN+  
Sbjct:   180 IVN-SIKE--HSKQINDIQTSRDMTMFVTASKDCTSKLFDSTSLEHQKTFRTERPVNSAA 236

Query:   240 MSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPD 299
             +SP+ DHVVLGGGQ+A  VTTT  R GKFEA+FF    +EE G VKGHFGPIN+LAF+PD
Sbjct:   237 ISPIYDHVVLGGGQEAMDVTTTSTRIGKFEARFFHVAFEEEFGRVKGHFGPINSLAFHPD 296

Query:   300 GKRY 303
             GK Y
Sbjct:   297 GKSY 300

GO:0003743 "translation initiation factor activity" evidence=ISS

GO:0005852 "eukaryotic translation initiation factor 3 complex" evidence=ISS

GO:0006413 "translational initiation" evidence=ISS

UNIPROTKB|Q66J51 eif3i "Eukaryotic translation initiation factor 3 subunit I" [Xenopus laevis (taxid:8355)]

 Score = 713 (256.0 bits), Expect = 2.1e-70, P = 2.1e-70
 Identities = 142/304 (46%), Positives = 198/304 (65%)

Query:     1 MRPILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDV 60
             MRPIL++GHER +T +KYN+DGDLLF+ AKD    VW++ NGERLGTY GH GAVWC DV
Sbjct:     1 MRPILLQGHERSITQIKYNRDGDLLFTVAKDPVVNVWYSVNGERLGTYNGHTGAVWCVDV 60

Query:    61 SRDSMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNS 120
               ++  +++GSAD + +LW+ ETG QL     +S  R+  F  G  + + +TD  M    
Sbjct:    61 DWETRHVLSGSADNSCRLWDCETGKQLALLQTNSAVRTCGFDFGGNIIMFSTDKQMGYQC 120

Query:   121 AIHVKRIARDPAD-QGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGK 179
              +    + RDP+  +  E  + +   + +I  AVWGPL   II+  E+  +  +  ++G+
Sbjct:   121 FVSFIDL-RDPSQIEDNEPYMKIPCSESKITSAVWGPLGENIIAGHENGELNHYSAKSGE 179

Query:   180 LLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTERPVNAVT 239
             ++  S KE  H K I  +  + D + F+T S D ++KL+D+ +LE  KT+ TERPVN+  
Sbjct:   180 IVN-SIKE--HSKQINDIQTSRDMTMFVTASKDCTSKLFDSTSLEHQKTFRTERPVNSAA 236

Query:   240 MSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPD 299
             +SP+ DHVVLGGGQ+A  VTTT  R GKFEA+FF    +EE G VKGHFGPIN+LAF+PD
Sbjct:   237 VSPIYDHVVLGGGQEAMDVTTTSTRIGKFEARFFHVAFEEEFGRVKGHFGPINSLAFHPD 296

Query:   300 GKRY 303
             GK Y
Sbjct:   297 GKSY 300

GO:0003743 "translation initiation factor activity" evidence=ISS

GO:0005852 "eukaryotic translation initiation factor 3 complex" evidence=ISS

GO:0006413 "translational initiation" evidence=ISS

UNIPROTKB|E1C6T8 EIF3I "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 711 (255.3 bits), Expect = 3.3e-70, P = 3.3e-70
 Identities = 142/304 (46%), Positives = 192/304 (63%)

Query:     1 MRPILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDV 60
             M+PIL++GHER +T +KYN++GDLLF+ AKD    VW++ NGERLGTY GH GAVWC D 
Sbjct:     1 MKPILLQGHERSITQIKYNREGDLLFTVAKDPIVNVWYSVNGERLGTYNGHTGAVWCVDA 60

Query:    61 SRDSMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNS 120
               D+  ++TGSAD + +LW+ ETG QL      S  R+  F  G  + + +TD  M    
Sbjct:    61 DWDTRHVLTGSADNSCRLWDCETGKQLALVKTSSAVRTCGFDFGGNIIMFSTDKQMGYQC 120

Query:   121 AIHVKRIARDPAD-QGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGK 179
              +    + RDP+  +  E  + +     +I  AVWGPL   II+  E   +  +  ++G+
Sbjct:   121 FVSFFDL-RDPSQIENNEPYMKIPCSDSKITSAVWGPLGEFIIAGHESGELNQFSAKSGE 179

Query:   180 LLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTERPVNAVT 239
              L    KE  H K I  +  + D + F+T S D +AKL+D  TLE +KT+ TERPVN+  
Sbjct:   180 QLSNI-KE--HTKQINDIQTSRDMTMFITASKDNTAKLFDCTTLEHLKTFRTERPVNSAA 236

Query:   240 MSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPD 299
             +SP+ DHVVLGGGQ+A  VTTT  R GKFEA+FF    +EE G VKGHFGPIN++AF+PD
Sbjct:   237 LSPIFDHVVLGGGQEAMDVTTTSTRIGKFEARFFHLAFEEEFGRVKGHFGPINSVAFHPD 296

Query:   300 GKRY 303
             GK Y
Sbjct:   297 GKSY 300

GO:0005852 "eukaryotic translation initiation factor 3 complex" evidence=IEA

GO:0006413 "translational initiation" evidence=IEA

UNIPROTKB|B5FZ19 EIF3I "Eukaryotic translation initiation factor 3 subunit I" [Taeniopygia guttata (taxid:59729)]

 Score = 704 (252.9 bits), Expect = 1.8e-69, P = 1.8e-69
 Identities = 140/304 (46%), Positives = 193/304 (63%)

Query:     1 MRPILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDV 60
             M+PIL++GHER +T +KYN++GDLLF+ AKD    VW++ NGERLGTY GH GAVWC D 
Sbjct:     1 MKPILLQGHERSITQIKYNREGDLLFTVAKDPIVNVWYSVNGERLGTYNGHTGAVWCVDA 60

Query:    61 SRDSMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNS 120
               D+  ++TGSAD + +LW+ ETG QL      S  R+  F  G  + + +TD  M    
Sbjct:    61 DWDTRHVLTGSADNSCRLWDCETGKQLALVKTSSAVRTCGFDFGGNIIMFSTDKQMGYQC 120

Query:   121 AIHVKRIARDPAD-QGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGK 179
              +    + RDP+  +  E  + +     +I  AVWGPL   II+  E+  +  +  ++G+
Sbjct:   121 FVSFFDL-RDPSQIENNEPYMKIPCSDSKITSAVWGPLGEFIIAGHENGELNQFSAKSGE 179

Query:   180 LLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTERPVNAVT 239
              L    KE  H K I  +  + D + F+T S D +AKL+D  +L+ +KT+ TERPVN+  
Sbjct:   180 QLSNI-KE--HTKQINDIQTSRDMTMFITASKDNTAKLFDCTSLKHLKTFRTERPVNSAA 236

Query:   240 MSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPD 299
             +SP+ DHVVLGGGQ+A  VTTT  R GKFEA+FF    +EE G VKGHFGPIN++AF+PD
Sbjct:   237 LSPIFDHVVLGGGQEAMDVTTTSTRIGKFEARFFHLAFEEEFGRVKGHFGPINSVAFHPD 296

Query:   300 GKRY 303
             GK Y
Sbjct:   297 GKSY 300

GO:0003743 "translation initiation factor activity" evidence=ISS

GO:0005852 "eukaryotic translation initiation factor 3 complex" evidence=ISS

GO:0006413 "translational initiation" evidence=ISS

UNIPROTKB|Q13347 EIF3I "Eukaryotic translation initiation factor 3 subunit I" [Homo sapiens (taxid:9606)]

 Score = 698 (250.8 bits), Expect = 8.0e-69, P = 8.0e-69
 Identities = 141/304 (46%), Positives = 192/304 (63%)

Query:     1 MRPILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDV 60
             M+PIL++GHER +T +KYN++GDLLF+ AKD    VW++ NGERLGTY GH GAVWC D 
Sbjct:     1 MKPILLQGHERSITQIKYNREGDLLFTVAKDPIVNVWYSVNGERLGTYMGHTGAVWCVDA 60

Query:    61 SRDSMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNS 120
               D+  ++TGSAD + +LW+ ETG QL     +S  R+  F  G  + + +TD  M    
Sbjct:    61 DWDTKHVLTGSADNSCRLWDCETGKQLALLKTNSAVRTCGFDFGGNIIMFSTDKQMGYQC 120

Query:   121 AIHVKRIARDPAD-QGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGK 179
              +    + RDP+     E  + +     +I  AVWGPL   II+  E   +  +  ++G+
Sbjct:   121 FVSFFDL-RDPSQIDNNEPYMKIPCNDSKITSAVWGPLGECIIAGHESGELNQYSAKSGE 179

Query:   180 LLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTERPVNAVT 239
             +L    KE  H + I  +  + D + F+T S D +AKL+D+ TLE  KT+ TERPVN+  
Sbjct:   180 VLVNV-KE--HSRQINDIQLSRDMTMFVTASKDNTAKLFDSTTLEHQKTFRTERPVNSAA 236

Query:   240 MSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPD 299
             +SP  DHVVLGGGQ+A  VTTT  R GKFEA+FF    +EE G VKGHFGPIN++AF+PD
Sbjct:   237 LSPNYDHVVLGGGQEAMDVTTTSTRIGKFEARFFHLAFEEEFGRVKGHFGPINSVAFHPD 296

Query:   300 GKRY 303
             GK Y
Sbjct:   297 GKSY 300

GO:0006413 "translational initiation" evidence=IC;IDA;TAS

GO:0003743 "translation initiation factor activity" evidence=IC;IDA

GO:0005852 "eukaryotic translation initiation factor 3 complex" evidence=IDA

GO:0005829 "cytosol" evidence=TAS

GO:0006412 "translation" evidence=TAS

GO:0010467 "gene expression" evidence=TAS

GO:0044267 "cellular protein metabolic process" evidence=TAS

GO:0005515 "protein binding" evidence=IPI

UNIPROTKB|Q5E966 EIF3I "Eukaryotic translation initiation factor 3 subunit I" [Bos taurus (taxid:9913)]

 Score = 697 (250.4 bits), Expect = 1.0e-68, P = 1.0e-68
 Identities = 141/304 (46%), Positives = 192/304 (63%)

Query:     1 MRPILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDV 60
             M+PIL++GHER +T +KYN++GDLLF+ AKD    VW++ NGERLGTY GH GAVWC D 
Sbjct:     1 MKPILLQGHERSITQIKYNREGDLLFTVAKDPIVNVWYSVNGERLGTYMGHTGAVWCVDA 60

Query:    61 SRDSMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNS 120
               D+  ++TGSAD + +LW+ ETG QL     +S  R+  F  G  + + +TD  M    
Sbjct:    61 DWDTKHVLTGSADNSCRLWDCETGKQLALLKTNSAVRTCGFDFGGNIIMFSTDKQMGYQC 120

Query:   121 AIHVKRIARDPAD-QGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGK 179
              +    + RDP+     E  + +     +I  AVWGPL   II+  E   +  +  ++G+
Sbjct:   121 FVSFFDL-RDPSQIDSNEPYMRIPCNDSKITSAVWGPLGECIIAGHEGGELNQYSAKSGE 179

Query:   180 LLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTERPVNAVT 239
             +L    KE  H + I  +  + D + F+T S D +AKL+D+ TLE  KT+ TERPVN+  
Sbjct:   180 VLVNV-KE--HSRQINDIQLSRDMTMFVTASKDNTAKLFDSTTLEHQKTFRTERPVNSAA 236

Query:   240 MSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPD 299
             +SP  DHVVLGGGQ+A  VTTT  R GKFEA+FF    +EE G VKGHFGPIN++AF+PD
Sbjct:   237 LSPNYDHVVLGGGQEAMDVTTTSTRIGKFEARFFHLAFEEEFGRVKGHFGPINSVAFHPD 296

Query:   300 GKRY 303
             GK Y
Sbjct:   297 GKSY 300

GO:0005852 "eukaryotic translation initiation factor 3 complex" evidence=ISS

GO:0003743 "translation initiation factor activity" evidence=ISS

GO:0006413 "translational initiation" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q7PP77	EIF3I_ANOGA	No assigned EC number	0.4326	0.9808	0.9388	yes	no
P0CS32	EIF3I_CRYNJ	No assigned EC number	0.4161	0.9616	0.8826	yes	no
Q54MT0	EIF3I_DICDI	No assigned EC number	0.4375	0.9552	0.9033	yes	no
Q5EBE8	EIF3I_XENTR	No assigned EC number	0.4703	0.9552	0.92	yes	no
B0BNA7	EIF3I_RAT	No assigned EC number	0.4539	0.9552	0.92	yes	no
Q5R7R2	EIF3I_PONAB	No assigned EC number	0.4539	0.9552	0.92	yes	no
B5FZ19	EIF3I_TAEGU	No assigned EC number	0.4539	0.9552	0.92	yes	no
Q4WX90	EIF3I_ASPFU	No assigned EC number	0.4258	0.9616	0.8852	yes	no
Q7ZV55	EIF3I_DANRE	No assigned EC number	0.4473	0.9552	0.92	yes	no
Q38884	EIF3I_ARATH	No assigned EC number	0.8032	0.9680	0.9237	no	no
Q6FL15	EIF3I_CANGA	No assigned EC number	0.3974	0.9552	0.8616	yes	no
Q5B8Y3	EIF3I_EMENI	No assigned EC number	0.4332	0.9648	0.8988	yes	no
P79083	EIF3I_SCHPO	No assigned EC number	0.4393	0.9680	0.9237	yes	no
O02195	EIF3I_DROME	No assigned EC number	0.4588	0.9808	0.9417	yes	no
Q9QZD9	EIF3I_MOUSE	No assigned EC number	0.4539	0.9552	0.92	yes	no
Q13347	EIF3I_HUMAN	No assigned EC number	0.4572	0.9552	0.92	yes	no
Q2UQ34	EIF3I_ASPOR	No assigned EC number	0.4295	0.9680	0.9044	yes	no
Q5IH81	EIF3I_RABIT	No assigned EC number	0.4407	0.9552	0.8978	yes	no
Q5E966	EIF3I_BOVIN	No assigned EC number	0.4572	0.9552	0.92	yes	no
Q29L19	EIF3I_DROPS	No assigned EC number	0.4685	0.9744	0.9355	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	GSVIVG00030682001	SubName- Full=Putative uncharacterized protein (Chromosome chr1 scaffold_5, whole genome shotgun sequence); (326 aa)
		(Vitis vinifera)
Predicted Functional Partners:
	GSVIVG00015309001	SubName- Full=Chromosome chr18 scaffold_1, whole genome shotgun sequence; (363 aa)				•	•	•	•		0.961
	GSVIVG00023929001	SubName- Full=Chromosome chr6 scaffold_3, whole genome shotgun sequence; (269 aa)				•		•	•		0.955
	GSVIVG00024042001	SubName- Full=Chromosome chr6 scaffold_3, whole genome shotgun sequence; (344 aa)				•	•	•	•		0.934
	GSVIVG00029350001	SubName- Full=Chromosome chr13 scaffold_48, whole genome shotgun sequence; (344 aa)				•	•	•	•		0.933
	GSVIVG00031929001	SubName- Full=Putative uncharacterized protein (Chromosome undetermined scaffold_60, whole geno [...] (464 aa)				•	•	•	•		0.917
	GSVIVG00025658001	SubName- Full=Chromosome chr8 scaffold_34, whole genome shotgun sequence; (437 aa)				•	•	•	•		0.896
	GSVIVG00001176001	SubName- Full=Chromosome chr2 scaffold_113, whole genome shotgun sequence; (605 aa)				•	•		•		0.894
	GSVIVG00022664001	SubName- Full=Chromosome chr14 scaffold_27, whole genome shotgun sequence; (977 aa)				•	•	•	•		0.828
	GSVIVG00033547001	SubName- Full=Chromosome chr5 scaffold_67, whole genome shotgun sequence; (333 aa)				•	•	•	•		0.825
	GSVIVG00022319001	SubName- Full=Chromosome chr14 scaffold_26, whole genome shotgun sequence; (116 aa)						•			0.800

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	313
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	7e-45
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	3e-32
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	3e-30
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	4e-22
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	2e-21
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	3e-21
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	4e-21
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	2e-19
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	1e-15
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	5e-09
pfam00400	39	pfam00400, WD40, WD domain, G-beta repeat	1e-08
smart00320	40	smart00320, WD40, WD40 repeats	1e-08
pfam00400	39	pfam00400, WD40, WD domain, G-beta repeat	1e-05
smart00320	40	smart00320, WD40, WD40 repeats	3e-05
smart00320	40	smart00320, WD40, WD40 repeats	6e-05
pfam00400	39	pfam00400, WD40, WD domain, G-beta repeat	1e-04
PTZ00421	493	PTZ00421, PTZ00421, coronin; Provisional	0.001

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score =  154 bits (390), Expect = 7e-45
 Identities = 86/298 (28%), Positives = 141/298 (47%), Gaps = 30/298 (10%)

Query: 7   KGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMT 66
           KGH   +T + ++ DG LL + + D T  VW  + GE L T +GH G V     S D   
Sbjct: 6   KGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTY 65

Query: 67  LITGSADQTAKLWNVETGAQLFTFN-FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVK 125
           L +GS+D+T +LW++ETG  + T     S   SV F+   ++   ++      +  I V 
Sbjct: 66  LASGSSDKTIRLWDLETGECVRTLTGHTSYVSSVAFSPDGRILSSSSR-----DKTIKVW 120

Query: 126 RIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESD 185
            +        G+ +  L+G    +N   + P    + S+ +D  +++WD  TGK +    
Sbjct: 121 DVET------GKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVATL- 173

Query: 186 KETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVT-ERPVNAVTMSPLL 244
             TGH   + S+A + DG   L+ S D + KLWD  T + + T    E  VN+V  SP  
Sbjct: 174 --TGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSP-D 230

Query: 245 DHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKR 302
            +++  G +D +              + +D    E +  + GH   + +LA++PDGKR
Sbjct: 231 GYLLASGSEDGT-------------IRVWDLRTGECVQTLSGHTNSVTSLAWSPDGKR 275

Length = 289

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score =  120 bits (304), Expect = 3e-32
 Identities = 62/217 (28%), Positives = 102/217 (47%), Gaps = 19/217 (8%)

Query: 6   MKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSM 65
           + GH   ++ + ++ DG +L S ++D T  VW  + G+ L T RGH   V     S D  
Sbjct: 89  LTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGT 148

Query: 66  TLITGSADQTAKLWNVETG--AQLFTFNFDSPARSVDF-AVGDKLAVITTDPFMELNSAI 122
            + + S D T KLW++ TG      T        SV F   G+KL   ++D        I
Sbjct: 149 FVASSSQDGTIKLWDLRTGKCVATLTG-HTGEVNSVAFSPDGEKLLSSSSD------GTI 201

Query: 123 HVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLK 182
            +  +        G+ +  L+G +  +N   + P    + S  ED  +R+WD  TG+ ++
Sbjct: 202 KLWDL------STGKCLGTLRGHENGVNSVAFSPDGYLLASGSEDGTIRVWDLRTGECVQ 255

Query: 183 ESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWD 219
                +GH  ++TSLA + DG    +GS D + ++WD
Sbjct: 256 TL---SGHTNSVTSLAWSPDGKRLASGSADGTIRIWD 289

Length = 289

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score =  115 bits (290), Expect = 3e-30
 Identities = 70/260 (26%), Positives = 98/260 (37%), Gaps = 70/260 (26%)

Query: 45  LGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVG 104
             T +GH G V C   S D   L TGS D T K+W++ETG  L T               
Sbjct: 2   RRTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRT--------------- 46

Query: 105 DKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISA 164
                                                LKG  G +           + S 
Sbjct: 47  -------------------------------------LKGHTGPVRDVAASADGTYLASG 69

Query: 165 GEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLE 224
             D  +R+WD ETG+ ++     TGH   ++S+A + DG    + S DK+ K+WD  T +
Sbjct: 70  SSDKTIRLWDLETGECVRTL---TGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGK 126

Query: 225 LIKTYVT-ERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGG 283
            + T       VN+V  SP     V    QD   +   D R GK  A             
Sbjct: 127 CLTTLRGHTDWVNSVAFSP-DGTFVASSSQD-GTIKLWDLRTGKCVATL----------- 173

Query: 284 VKGHFGPINALAFNPDGKRY 303
             GH G +N++AF+PDG++ 
Sbjct: 174 -TGHTGEVNSVAFSPDGEKL 192

Length = 289

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 95.5 bits (236), Expect = 4e-22
 Identities = 74/311 (23%), Positives = 127/311 (40%), Gaps = 33/311 (10%)

Query: 2   RPILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGER-LGTYRGHNG----AVW 56
             +L++GHE  +T + ++ DG+LL S + D T  +W  DNGE+ + +  G +      + 
Sbjct: 57  SSLLLRGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLA 116

Query: 57  CCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFM 116
                 +S+ L + S D T KLW++ T  +L              A      ++      
Sbjct: 117 LSSPDGNSILLASSSLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLA----- 171

Query: 117 ELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTII-SAGEDAIVRIWDT 175
              S   +    +    + G+ +  L G    ++   + P    +I S   D  +R+WD 
Sbjct: 172 ---SGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDL 228

Query: 176 ETGKLLKESDKETGHKKT-ITSLAKAADGSHFLTGSLDKSAKLWDARTL--ELIKTYVTE 232
            TGKLL+ +    GH  + ++S +   DGS   +GS D + +LWD R+    L       
Sbjct: 229 STGKLLRSTLS--GHSDSVVSSFSP--DGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHS 284

Query: 233 RPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPIN 292
             V +V  SP    +  G       +   +                      KGH GP++
Sbjct: 285 SSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLTL------------KGHEGPVS 332

Query: 293 ALAFNPDGKRY 303
           +L+F+PDG   
Sbjct: 333 SLSFSPDGSLL 343

Length = 466

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 91.2 bits (227), Expect = 2e-21
 Identities = 44/165 (26%), Positives = 79/165 (47%), Gaps = 18/165 (10%)

Query: 138 SVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSL 197
               LKG  G +    + P  + + +   D  +++WD ETG+LL+      GH   +  +
Sbjct: 1   LRRTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLR---TLKGHTGPVRDV 57

Query: 198 AKAADGSHFLTGSLDKSAKLWDARTLELIKTYVT-ERPVNAVTMSPLLDHVVLGGGQDAS 256
           A +ADG++  +GS DK+ +LWD  T E ++T       V++V  SP    ++    +D +
Sbjct: 58  AASADGTYLASGSSDKTIRLWDLETGECVRTLTGHTSYVSSVAFSP-DGRILSSSSRDKT 116

Query: 257 AVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGK 301
                         K +D    + +  ++GH   +N++AF+PDG 
Sbjct: 117 -------------IKVWDVETGKCLTTLRGHTDWVNSVAFSPDGT 148

Length = 289

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 93.2 bits (230), Expect = 3e-21
 Identities = 64/232 (27%), Positives = 98/232 (42%), Gaps = 13/232 (5%)

Query: 7   KGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNG-ERLGTYRGHNGAVWCCDVSRDSM 65
            GH        ++ DG LL S + D T  +W   +    L T  GH+ +V     S D  
Sbjct: 239 SGHSDS-VVSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGK 297

Query: 66  TLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVK 125
            L +GS+D T +LW++ETG  L +         V        ++  +     L S     
Sbjct: 298 LLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVS-------SLSFSPDGSLLVSGGSDD 350

Query: 126 RIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESD 185
              R    + G+ +  L+G    +    + P  R + S   D  VR+WD  TG LL+  D
Sbjct: 351 GTIRLWDLRTGKPLKTLEG-HSNVLSVSFSPDGRVVSSGSTDGTVRLWDLSTGSLLRNLD 409

Query: 186 KETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTERPVNA 237
              GH   +TSL  + DG    +GS D + +LWD +T     ++  +  V A
Sbjct: 410 ---GHTSRVTSLDFSPDGKSLASGSSDNTIRLWDLKTSLKSVSFSPDGKVLA 458

Length = 466

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 92.8 bits (229), Expect = 4e-21
 Identities = 66/300 (22%), Positives = 124/300 (41%), Gaps = 31/300 (10%)

Query: 9   HERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLI 68
           +   L  L  ++ G LL +   D   ++    +       RGH  ++     S D   L+
Sbjct: 26  NSLSLLSLGSSESGILLLALLSDSLVSLPDLSSL----LLRGHEDSITSIAFSPDGELLL 81

Query: 69  TGSADQTAKLWNVETGAQL---FTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVK 125
           +GS+D T KLW+++ G +L        DS    +  +  D  +++        +S++   
Sbjct: 82  SGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPDGNSILLA------SSSLDGT 135

Query: 126 RIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGE-DAIVRIWDTETGKLLKES 184
               D +   G+ +  L+G    +    + P  + + S    D  +++WD  TGK L   
Sbjct: 136 VKLWDLSTP-GKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLS-- 192

Query: 185 DKETGHKKTITSLAKAADGS-HFLTGSLDKSAKLWDARTLELIKTYVTERPVNAVTMSPL 243
               GH   ++SLA + DG     +GS D + +LWD  T +L+++ ++    + V+    
Sbjct: 193 -TLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSVVSSFSP 251

Query: 244 LDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKRY 303
              ++  G  D   +   D R+     +              GH   + ++AF+PDGK  
Sbjct: 252 DGSLLASGSSD-GTIRLWDLRSSSSLLRTLS-----------GHSSSVLSVAFSPDGKLL 299

Length = 466

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 88.2 bits (217), Expect = 2e-19
 Identities = 76/300 (25%), Positives = 119/300 (39%), Gaps = 70/300 (23%)

Query: 5   LMKGHERPLTYLKYNKDGDLLF-SCAKDHTPTVWFADNGERL-GTYRGHNGAVWCCDVSR 62
            + GH  P++ L ++ DG LL  S + D T  +W    G+ L  T  GH+ +V     S 
Sbjct: 193 TLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSVVSS-FSP 251

Query: 63  DSMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAI 122
           D   L +GS+D T +LW++ + + L                                   
Sbjct: 252 DGSLLASGSSDGTIRLWDLRSSSSL----------------------------------- 276

Query: 123 HVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLK 182
                           +  L G    +    + P  + + S   D  VR+WD ETGKLL 
Sbjct: 277 ----------------LRTLSGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLS 320

Query: 183 ESDKETGHKKTITSLAKAADGSHFLTG-SLDKSAKLWDARTLELIKTYVTERPVNAVTMS 241
            S    GH+  ++SL+ + DGS  ++G S D + +LWD RT + +KT      V +V+ S
Sbjct: 321 -SLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGKPLKTLEGHSNVLSVSFS 379

Query: 242 PLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGK 301
           P    V  G                    + +D      +  + GH   + +L F+PDGK
Sbjct: 380 PDGRVVSSGSTDG--------------TVRLWDLSTGSLLRNLDGHTSRVTSLDFSPDGK 425

Length = 466

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 75.4 bits (186), Expect = 1e-15
 Identities = 27/76 (35%), Positives = 41/76 (53%)

Query: 5   LMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDS 64
            ++GHE  +  + ++ DG LL S ++D T  VW    GE + T  GH  +V     S D 
Sbjct: 214 TLRGHENGVNSVAFSPDGYLLASGSEDGTIRVWDLRTGECVQTLSGHTNSVTSLAWSPDG 273

Query: 65  MTLITGSADQTAKLWN 80
             L +GSAD T ++W+
Sbjct: 274 KRLASGSADGTIRIWD 289

Length = 289

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 56.6 bits (135), Expect = 5e-09
 Identities = 26/106 (24%), Positives = 47/106 (44%), Gaps = 2/106 (1%)

Query: 1   MRPILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDV 60
            +P+        +  + ++ DG ++ S + D T  +W    G  L    GH   V   D 
Sbjct: 361 GKPLKTLEGHSNVLSVSFSPDGRVVSSGSTDGTVRLWDLSTGSLLRNLDGHTSRVTSLDF 420

Query: 61  SRDSMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDK 106
           S D  +L +GS+D T +LW+++T   L + +F    + +     D 
Sbjct: 421 SPDGKSLASGSSDNTIRLWDLKT--SLKSVSFSPDGKVLASKSSDL 464

Length = 466

>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat

 Score = 50.0 bits (120), Expect = 1e-08
 Identities = 15/39 (38%), Positives = 21/39 (53%)

Query: 42 GERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWN 80
          G+ L T +GH G V     S D   L +GS D T ++W+
Sbjct: 1  GKLLRTLKGHTGPVTSVAFSPDGNLLASGSDDGTVRVWD 39

Length = 39

>gnl|CDD|197651 smart00320, WD40, WD40 repeats

 Score = 50.0 bits (120), Expect = 1e-08
 Identities = 18/40 (45%), Positives = 22/40 (55%)

Query: 41 NGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWN 80
          +GE L T +GH G V     S D   L +GS D T KLW+
Sbjct: 1  SGELLKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40

>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat

 Score = 41.2 bits (97), Expect = 1e-05
 Identities = 12/32 (37%), Positives = 20/32 (62%)

Query: 188 TGHKKTITSLAKAADGSHFLTGSLDKSAKLWD 219
            GH   +TS+A + DG+   +GS D + ++WD
Sbjct: 8   KGHTGPVTSVAFSPDGNLLASGSDDGTVRVWD 39

Length = 39

>gnl|CDD|197651 smart00320, WD40, WD40 repeats

 Score = 40.0 bits (94), Expect = 3e-05
 Identities = 14/32 (43%), Positives = 20/32 (62%)

Query: 188 TGHKKTITSLAKAADGSHFLTGSLDKSAKLWD 219
            GH   +TS+A + DG +  +GS D + KLWD
Sbjct: 9   KGHTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40

>gnl|CDD|197651 smart00320, WD40, WD40 repeats

 Score = 39.2 bits (92), Expect = 6e-05
 Identities = 11/39 (28%), Positives = 20/39 (51%)

Query: 136 GESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWD 174
           GE +  LKG  G +    + P  + + S  +D  +++WD
Sbjct: 2   GELLKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40

>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat

 Score = 38.5 bits (90), Expect = 1e-04
 Identities = 12/39 (30%), Positives = 19/39 (48%)

Query: 136 GESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWD 174
           G+ +  LKG  G +    + P    + S  +D  VR+WD
Sbjct: 1   GKLLRTLKGHTGPVTSVAFSPDGNLLASGSDDGTVRVWD 39

Length = 39

>gnl|CDD|173611 PTZ00421, PTZ00421, coronin; Provisional

 Score = 40.3 bits (94), Expect = 0.001
 Identities = 25/61 (40%), Positives = 28/61 (45%), Gaps = 7/61 (11%)

Query: 163 SAGEDAIVRIWDTETGKLLKESDKET--GHKKTITSLAKAADGSHFLTGSLDKSAKLWDA 220
           SAG D +V +WD E GK       E    H   ITSL    DGS   T S DK   + D 
Sbjct: 143 SAGADMVVNVWDVERGKA-----VEVIKCHSDQITSLEWNLDGSLLCTTSKDKKLNIIDP 197

Query: 221 R 221
           R
Sbjct: 198 R 198

Length = 493

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	313
KOG0643	327	consensus Translation initiation factor 3, subunit	100.0
KOG0271	480	consensus Notchless-like WD40 repeat-containing pr	100.0
KOG0272	459	consensus U4/U6 small nuclear ribonucleoprotein Pr	100.0
KOG0286	343	consensus G-protein beta subunit [General function	100.0
KOG0279	315	consensus G protein beta subunit-like protein [Sig	100.0
KOG0272	459	consensus U4/U6 small nuclear ribonucleoprotein Pr	100.0
KOG0273	524	consensus Beta-transducin family (WD-40 repeat) pr	100.0
KOG0279	315	consensus G protein beta subunit-like protein [Sig	100.0
KOG0318	603	consensus WD40 repeat stress protein/actin interac	100.0
KOG0271	480	consensus Notchless-like WD40 repeat-containing pr	100.0
KOG0263	707	consensus Transcription initiation factor TFIID, s	100.0
KOG0263	707	consensus Transcription initiation factor TFIID, s	100.0
KOG0284	464	consensus Polyadenylation factor I complex, subuni	100.0
KOG0285	460	consensus Pleiotropic regulator 1 [RNA processing	100.0
KOG0291	893	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0266	456	consensus WD40 repeat-containing protein [General	100.0
KOG0265	338	consensus U5 snRNP-specific protein-like factor an	100.0
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	100.0
KOG0295	406	consensus WD40 repeat-containing protein [Function	100.0
KOG0278	334	consensus Serine/threonine kinase receptor-associa	100.0
KOG0296	399	consensus Angio-associated migratory cell protein	100.0
KOG0315	311	consensus G-protein beta subunit-like protein (con	100.0
KOG0291	893	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0266	456	consensus WD40 repeat-containing protein [General	100.0
KOG0282	503	consensus mRNA splicing factor [Function unknown]	100.0
KOG0293	519	consensus WD40 repeat-containing protein [Function	100.0
KOG0315	311	consensus G-protein beta subunit-like protein (con	100.0
KOG0645	312	consensus WD40 repeat protein [General function pr	99.98
KOG0316	307	consensus Conserved WD40 repeat-containing protein	99.98
KOG1407	313	consensus WD40 repeat protein [Function unknown]	99.98
PTZ00421	493	coronin; Provisional	99.98
KOG0295	406	consensus WD40 repeat-containing protein [Function	99.97
KOG0286	343	consensus G-protein beta subunit [General function	99.97
KOG0640	430	consensus mRNA cleavage stimulating factor complex	99.97
KOG0281	499	consensus Beta-TrCP (transducin repeats containing	99.97
KOG0319	775	consensus WD40-repeat-containing subunit of the 18	99.97
KOG0318	603	consensus WD40 repeat stress protein/actin interac	99.97
KOG0283	712	consensus WD40 repeat-containing protein [Function	99.97
PTZ00420	568	coronin; Provisional	99.97
KOG0273	524	consensus Beta-transducin family (WD-40 repeat) pr	99.97
KOG0275	508	consensus Conserved WD40 repeat-containing protein	99.97
KOG0647	347	consensus mRNA export protein (contains WD40 repea	99.97
KOG0292	1202	consensus Vesicle coat complex COPI, alpha subunit	99.97
KOG0284	464	consensus Polyadenylation factor I complex, subuni	99.97
KOG2096	420	consensus WD40 repeat protein [General function pr	99.97
KOG0305	484	consensus Anaphase promoting complex, Cdc20, Cdh1,	99.97
KOG0277	311	consensus Peroxisomal targeting signal type 2 rece	99.96
KOG0285	460	consensus Pleiotropic regulator 1 [RNA processing	99.96
PLN00181	793	protein SPA1-RELATED; Provisional	99.96
KOG0645	312	consensus WD40 repeat protein [General function pr	99.96
KOG0265	338	consensus U5 snRNP-specific protein-like factor an	99.96
KOG0293	519	consensus WD40 repeat-containing protein [Function	99.96
KOG0319	775	consensus WD40-repeat-containing subunit of the 18	99.96
PTZ00421	493	coronin; Provisional	99.96
KOG0276	794	consensus Vesicle coat complex COPI, beta' subunit	99.96
KOG1446	311	consensus Histone H3 (Lys4) methyltransferase comp	99.96
KOG0289	506	consensus mRNA splicing factor [General function p	99.96
KOG0276	794	consensus Vesicle coat complex COPI, beta' subunit	99.96
PLN00181	793	protein SPA1-RELATED; Provisional	99.96
KOG0292	1202	consensus Vesicle coat complex COPI, alpha subunit	99.96
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	99.96
KOG0281	499	consensus Beta-TrCP (transducin repeats containing	99.95
KOG0973	942	consensus Histone transcription regulator HIRA, WD	99.95
KOG0268	433	consensus Sof1-like rRNA processing protein (conta	99.95
KOG1407	313	consensus WD40 repeat protein [Function unknown]	99.95
KOG0313	423	consensus Microtubule binding protein YTM1 (contai	99.95
KOG0300	481	consensus WD40 repeat-containing protein [Function	99.95
KOG0310	487	consensus Conserved WD40 repeat-containing protein	99.95
KOG0274	537	consensus Cdc4 and related F-box and WD-40 protein	99.95
KOG0274	537	consensus Cdc4 and related F-box and WD-40 protein	99.95
KOG0282	503	consensus mRNA splicing factor [Function unknown]	99.95
PTZ00420	568	coronin; Provisional	99.95
KOG0299	479	consensus U3 snoRNP-associated protein (contains W	99.95
KOG0296	399	consensus Angio-associated migratory cell protein	99.95
KOG0310	487	consensus Conserved WD40 repeat-containing protein	99.95
KOG0278	334	consensus Serine/threonine kinase receptor-associa	99.95
KOG0772	641	consensus Uncharacterized conserved protein, conta	99.95
KOG0306	888	consensus WD40-repeat-containing subunit of the 18	99.94
KOG0288	459	consensus WD40 repeat protein TipD [General functi	99.94
KOG0313	423	consensus Microtubule binding protein YTM1 (contai	99.94
KOG0306	888	consensus WD40-repeat-containing subunit of the 18	99.94
KOG1273	405	consensus WD40 repeat protein [General function pr	99.94
KOG0308	735	consensus Conserved WD40 repeat-containing protein	99.94
KOG0316	307	consensus Conserved WD40 repeat-containing protein	99.94
KOG0973	942	consensus Histone transcription regulator HIRA, WD	99.94
KOG1332	299	consensus Vesicle coat complex COPII, subunit SEC1	99.94
KOG0267	825	consensus Microtubule severing protein katanin p80	99.93
KOG0277	311	consensus Peroxisomal targeting signal type 2 rece	99.93
KOG0299	479	consensus U3 snoRNP-associated protein (contains W	99.93
KOG0294	362	consensus WD40 repeat-containing protein [Function	99.93
KOG0269	839	consensus WD40 repeat-containing protein [Function	99.93
KOG0275	508	consensus Conserved WD40 repeat-containing protein	99.93
KOG4283	397	consensus Transcription-coupled repair protein CSA	99.93
KOG1036	323	consensus Mitotic spindle checkpoint protein BUB3,	99.92
KOG1274	933	consensus WD40 repeat protein [General function pr	99.92
KOG0264	422	consensus Nucleosome remodeling factor, subunit CA	99.92
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	99.92
KOG0283	712	consensus WD40 repeat-containing protein [Function	99.92
KOG0647	347	consensus mRNA export protein (contains WD40 repea	99.92
KOG0267	825	consensus Microtubule severing protein katanin p80	99.92
KOG0641	350	consensus WD40 repeat protein [General function pr	99.92
KOG0289	506	consensus mRNA splicing factor [General function p	99.92
KOG0294	362	consensus WD40 repeat-containing protein [Function	99.91
KOG0641	350	consensus WD40 repeat protein [General function pr	99.91
KOG0646	476	consensus WD40 repeat protein [General function pr	99.91
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	99.9
KOG2055	514	consensus WD40 repeat protein [General function pr	99.9
KOG0302	440	consensus Ribosome Assembly protein [General funct	99.9
KOG2106	626	consensus Uncharacterized conserved protein, conta	99.9
KOG0646	476	consensus WD40 repeat protein [General function pr	99.9
KOG0288	459	consensus WD40 repeat protein TipD [General functi	99.9
KOG1446	311	consensus Histone H3 (Lys4) methyltransferase comp	99.9
KOG0772	641	consensus Uncharacterized conserved protein, conta	99.9
KOG0305	484	consensus Anaphase promoting complex, Cdc20, Cdh1,	99.9
KOG1539	910	consensus WD repeat protein [General function pred	99.89
KOG0308	735	consensus Conserved WD40 repeat-containing protein	99.89
KOG0264	422	consensus Nucleosome remodeling factor, subunit CA	99.89
KOG0301	745	consensus Phospholipase A2-activating protein (con	99.89
KOG1274	933	consensus WD40 repeat protein [General function pr	99.88
KOG4328	498	consensus WD40 protein [Function unknown]	99.88
KOG0643	327	consensus Translation initiation factor 3, subunit	99.88
KOG1036	323	consensus Mitotic spindle checkpoint protein BUB3,	99.88
KOG0640	430	consensus mRNA cleavage stimulating factor complex	99.88
KOG2445	361	consensus Nuclear pore complex component (sc Seh1)	99.88
KOG0302	440	consensus Ribosome Assembly protein [General funct	99.87
KOG1408	1080	consensus WD40 repeat protein [Function unknown]	99.87
KOG0301	745	consensus Phospholipase A2-activating protein (con	99.87
KOG0300	481	consensus WD40 repeat-containing protein [Function	99.87
KOG2106	626	consensus Uncharacterized conserved protein, conta	99.87
KOG1063	764	consensus RNA polymerase II elongator complex, sub	99.87
KOG2048	691	consensus WD40 repeat protein [General function pr	99.86
KOG1408	1080	consensus WD40 repeat protein [Function unknown]	99.86
KOG0269	839	consensus WD40 repeat-containing protein [Function	99.86
KOG1539	910	consensus WD repeat protein [General function pred	99.85
KOG4378	673	consensus Nuclear protein COP1 [Signal transductio	99.85
KOG0321	720	consensus WD40 repeat-containing protein L2DTL [Fu	99.85
KOG0268	433	consensus Sof1-like rRNA processing protein (conta	99.85
KOG0639	705	consensus Transducin-like enhancer of split protei	99.84
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	99.84
KOG1009	434	consensus Chromatin assembly complex 1 subunit B/C	99.84
KOG0303	472	consensus Actin-binding protein Coronin, contains	99.84
KOG1063	764	consensus RNA polymerase II elongator complex, sub	99.83
KOG0642	577	consensus Cell-cycle nuclear protein, contains WD-	99.83
KOG2096	420	consensus WD40 repeat protein [General function pr	99.83
KOG1332	299	consensus Vesicle coat complex COPII, subunit SEC1	99.83
KOG0642	577	consensus Cell-cycle nuclear protein, contains WD-	99.82
KOG0639	705	consensus Transducin-like enhancer of split protei	99.82
KOG0650	733	consensus WD40 repeat nucleolar protein Bop1, invo	99.81
KOG2048	691	consensus WD40 repeat protein [General function pr	99.81
KOG0270	463	consensus WD40 repeat-containing protein [Function	99.8
KOG0644	1113	consensus Uncharacterized conserved protein, conta	99.8
KOG1034	385	consensus Transcriptional repressor EED/ESC/FIE, r	99.78
KOG2055	514	consensus WD40 repeat protein [General function pr	99.78
KOG0307	1049	consensus Vesicle coat complex COPII, subunit SEC3	99.78
KOG0771	398	consensus Prolactin regulatory element-binding pro	99.78
KOG4283	397	consensus Transcription-coupled repair protein CSA	99.77
KOG1034	385	consensus Transcriptional repressor EED/ESC/FIE, r	99.77
KOG0303	472	consensus Actin-binding protein Coronin, contains	99.77
KOG0270	463	consensus WD40 repeat-containing protein [Function	99.77
COG2319	466	FOG: WD40 repeat [General function prediction only	99.77
KOG0322	323	consensus G-protein beta subunit-like protein GNB1	99.76
KOG4227	609	consensus WD40 repeat protein [General function pr	99.76
KOG2445	361	consensus Nuclear pore complex component (sc Seh1)	99.76
KOG2919	406	consensus Guanine nucleotide-binding protein [Gene	99.76
KOG1524	737	consensus WD40 repeat-containing protein CHE-2 [Ge	99.76
KOG0649	325	consensus WD40 repeat protein [General function pr	99.76
KOG4328	498	consensus WD40 protein [Function unknown]	99.75
COG2319	466	FOG: WD40 repeat [General function prediction only	99.75
KOG4378	673	consensus Nuclear protein COP1 [Signal transductio	99.74
KOG0650	733	consensus WD40 repeat nucleolar protein Bop1, invo	99.73
PRK01742	429	tolB translocation protein TolB; Provisional	99.73
KOG1007	370	consensus WD repeat protein TSSC1, WD repeat super	99.72
KOG0321	720	consensus WD40 repeat-containing protein L2DTL [Fu	99.72
KOG1009	434	consensus Chromatin assembly complex 1 subunit B/C	99.72
KOG1963	792	consensus WD40 repeat protein [General function pr	99.72
KOG0307	1049	consensus Vesicle coat complex COPII, subunit SEC3	99.72
KOG1523	361	consensus Actin-related protein Arp2/3 complex, su	99.71
KOG1007	370	consensus WD repeat protein TSSC1, WD repeat super	99.7
KOG1310	758	consensus WD40 repeat protein [General function pr	99.69
KOG2139	445	consensus WD40 repeat protein [General function pr	99.69
KOG1445	1012	consensus Tumor-specific antigen (contains WD repe	99.68
KOG1963	792	consensus WD40 repeat protein [General function pr	99.67
PRK03629	429	tolB translocation protein TolB; Provisional	99.67
PRK04922	433	tolB translocation protein TolB; Provisional	99.66
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	99.65
KOG1445	1012	consensus Tumor-specific antigen (contains WD repe	99.65
PRK11028	330	6-phosphogluconolactonase; Provisional	99.65
KOG0290	364	consensus Conserved WD40 repeat-containing protein	99.65
KOG1188	376	consensus WD40 repeat protein [General function pr	99.63
PRK02889	427	tolB translocation protein TolB; Provisional	99.63
PRK11028	330	6-phosphogluconolactonase; Provisional	99.63
KOG0649	325	consensus WD40 repeat protein [General function pr	99.63
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	99.63
KOG2919	406	consensus Guanine nucleotide-binding protein [Gene	99.62
PRK05137	435	tolB translocation protein TolB; Provisional	99.62
PRK01742	429	tolB translocation protein TolB; Provisional	99.62
KOG1587	555	consensus Cytoplasmic dynein intermediate chain [C	99.61
KOG4497	447	consensus Uncharacterized conserved protein WDR8,	99.61
KOG2110	391	consensus Uncharacterized conserved protein, conta	99.61
PRK05137	435	tolB translocation protein TolB; Provisional	99.6
KOG0644	1113	consensus Uncharacterized conserved protein, conta	99.59
KOG1273	405	consensus WD40 repeat protein [General function pr	99.59
KOG1272	545	consensus WD40-repeat-containing subunit of the 18	99.59
KOG0322	323	consensus G-protein beta subunit-like protein GNB1	99.59
KOG1310	758	consensus WD40 repeat protein [General function pr	99.57
KOG0771	398	consensus Prolactin regulatory element-binding pro	99.57
KOG2111	346	consensus Uncharacterized conserved protein, conta	99.56
KOG1188	376	consensus WD40 repeat protein [General function pr	99.55
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	99.54
PRK04922	433	tolB translocation protein TolB; Provisional	99.54
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	99.54
KOG0290	364	consensus Conserved WD40 repeat-containing protein	99.53
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	99.52
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	99.51
KOG1524	737	consensus WD40 repeat-containing protein CHE-2 [Ge	99.51
KOG2394	636	consensus WD40 protein DMR-N9 [General function pr	99.51
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	99.5
PRK03629	429	tolB translocation protein TolB; Provisional	99.5
KOG1523	361	consensus Actin-related protein Arp2/3 complex, su	99.5
PRK02889	427	tolB translocation protein TolB; Provisional	99.5
KOG4227	609	consensus WD40 repeat protein [General function pr	99.49
PRK04792	448	tolB translocation protein TolB; Provisional	99.49
PRK00178	430	tolB translocation protein TolB; Provisional	99.49
KOG2394	636	consensus WD40 protein DMR-N9 [General function pr	99.47
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	99.47
KOG2110	391	consensus Uncharacterized conserved protein, conta	99.46
KOG2321	703	consensus WD40 repeat protein [General function pr	99.44
PRK01029	428	tolB translocation protein TolB; Provisional	99.41
KOG1334	559	consensus WD40 repeat protein [General function pr	99.41
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	99.41
PRK00178	430	tolB translocation protein TolB; Provisional	99.38
KOG3881	412	consensus Uncharacterized conserved protein [Funct	99.37
KOG0974	967	consensus WD-repeat protein WDR6, WD repeat superf	99.37
KOG1587	555	consensus Cytoplasmic dynein intermediate chain [C	99.35
KOG2321	703	consensus WD40 repeat protein [General function pr	99.34
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	99.33
KOG1064	2439	consensus RAVE (regulator of V-ATPase assembly) co	99.32
PRK04792	448	tolB translocation protein TolB; Provisional	99.32
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	99.3
KOG4547	541	consensus WD40 repeat-containing protein [General	99.28
KOG0974	967	consensus WD-repeat protein WDR6, WD repeat superf	99.27
KOG1354	433	consensus Serine/threonine protein phosphatase 2A,	99.25
KOG4547	541	consensus WD40 repeat-containing protein [General	99.23
PRK01029	428	tolB translocation protein TolB; Provisional	99.21
KOG2315	566	consensus Predicted translation initiation factor	99.21
KOG4190	1034	consensus Uncharacterized conserved protein [Funct	99.19
KOG2111	346	consensus Uncharacterized conserved protein, conta	99.18
KOG1272	545	consensus WD40-repeat-containing subunit of the 18	99.15
KOG4497	447	consensus Uncharacterized conserved protein WDR8,	99.14
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	99.14
KOG0309	1081	consensus Conserved WD40 repeat-containing protein	99.13
KOG1334	559	consensus WD40 repeat protein [General function pr	99.12
COG5354	561	Uncharacterized protein, contains Trp-Asp (WD) rep	99.11
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	99.1
KOG2139	445	consensus WD40 repeat protein [General function pr	99.1
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	99.1
COG4946	668	Uncharacterized protein related to the periplasmic	99.09
PF00400	39	WD40: WD domain, G-beta repeat; InterPro: IPR01978	99.08
KOG2314	698	consensus Translation initiation factor 3, subunit	99.07
KOG3881	412	consensus Uncharacterized conserved protein [Funct	99.04
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	99.03
KOG2041	1189	consensus WD40 repeat protein [General function pr	99.03
KOG3914	390	consensus WD repeat protein WDR4 [Function unknown	99.0
KOG1832	1516	consensus HIV-1 Vpr-binding protein [Cell cycle co	98.98
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	98.97
PRK04043	419	tolB translocation protein TolB; Provisional	98.94
KOG2315	566	consensus Predicted translation initiation factor	98.9
KOG1409	404	consensus Uncharacterized conserved protein, conta	98.89
PF15492	282	Nbas_N: Neuroblastoma-amplified sequence, N termin	98.88
PRK04043	419	tolB translocation protein TolB; Provisional	98.88
PF04762	928	IKI3: IKI3 family; InterPro: IPR006849 Members of	98.87
KOG1409	404	consensus Uncharacterized conserved protein, conta	98.86
PF00400	39	WD40: WD domain, G-beta repeat; InterPro: IPR01978	98.85
KOG2695	425	consensus WD40 repeat protein [General function pr	98.83
KOG2314	698	consensus Translation initiation factor 3, subunit	98.81
KOG0280	339	consensus Uncharacterized conserved protein [Amino	98.79
KOG4190	1034	consensus Uncharacterized conserved protein [Funct	98.78
KOG0280	339	consensus Uncharacterized conserved protein [Amino	98.77
KOG1064	2439	consensus RAVE (regulator of V-ATPase assembly) co	98.77
KOG4532	344	consensus WD40-like repeat containing protein [Gen	98.76
KOG3914	390	consensus WD repeat protein WDR4 [Function unknown	98.76
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	98.75
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	98.73
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	98.72
KOG0882	558	consensus Cyclophilin-related peptidyl-prolyl cis-	98.72
COG5170	460	CDC55 Serine/threonine protein phosphatase 2A, reg	98.69
KOG2041	1189	consensus WD40 repeat protein [General function pr	98.69
COG5354	561	Uncharacterized protein, contains Trp-Asp (WD) rep	98.65
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	98.63
KOG1645	463	consensus RING-finger-containing E3 ubiquitin liga	98.56
PF04762	928	IKI3: IKI3 family; InterPro: IPR006849 Members of	98.56
KOG1354	433	consensus Serine/threonine protein phosphatase 2A,	98.55
COG4946	668	Uncharacterized protein related to the periplasmic	98.52
KOG2066	846	consensus Vacuolar assembly/sorting protein VPS41	98.51
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	98.47
KOG2695	425	consensus WD40 repeat protein [General function pr	98.45
KOG1275	1118	consensus PAB-dependent poly(A) ribonuclease, subu	98.43
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	98.39
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	98.39
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	98.39
KOG1912	1062	consensus WD40 repeat protein [General function pr	98.38
KOG4532	344	consensus WD40-like repeat containing protein [Gen	98.31
KOG0309	1081	consensus Conserved WD40 repeat-containing protein	98.29
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	98.29
KOG4714	319	consensus Nucleoporin [Nuclear structure]	98.19
PF11768	545	DUF3312: Protein of unknown function (DUF3312); In	98.17
PF11768	545	DUF3312: Protein of unknown function (DUF3312); In	98.15
COG5170	460	CDC55 Serine/threonine protein phosphatase 2A, reg	98.13
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	98.12
smart00320	40	WD40 WD40 repeats. Note that these repeats are per	98.09
KOG4714	319	consensus Nucleoporin [Nuclear structure]	98.08
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	98.07
KOG0882	558	consensus Cyclophilin-related peptidyl-prolyl cis-	98.07
KOG2066	846	consensus Vacuolar assembly/sorting protein VPS41	98.0
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	97.98
KOG1275	1118	consensus PAB-dependent poly(A) ribonuclease, subu	97.94
KOG1920	1265	consensus IkappaB kinase complex, IKAP component [	97.93
PF15492	282	Nbas_N: Neuroblastoma-amplified sequence, N termin	97.9
KOG1832	1516	consensus HIV-1 Vpr-binding protein [Cell cycle co	97.89
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	97.85
KOG4640	665	consensus Anaphase-promoting complex (APC), subuni	97.85
KOG1645	463	consensus RING-finger-containing E3 ubiquitin liga	97.84
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	97.76
KOG4640	665	consensus Anaphase-promoting complex (APC), subuni	97.73
KOG1912	1062	consensus WD40 repeat protein [General function pr	97.73
smart00320	40	WD40 WD40 repeats. Note that these repeats are per	97.72
KOG1920	1265	consensus IkappaB kinase complex, IKAP component [	97.71
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	97.63
PRK02888	635	nitrous-oxide reductase; Validated	97.6
PF00930	353	DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin	97.5
PF04841	410	Vps16_N: Vps16, N-terminal region; InterPro: IPR00	97.49
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	97.39
PRK02888	635	nitrous-oxide reductase; Validated	97.36
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	97.28
PF05096	264	Glu_cyclase_2: Glutamine cyclotransferase; InterPr	97.26
PF12894	47	Apc4_WD40: Anaphase-promoting complex subunit 4 WD	97.24
PF08553	794	VID27: VID27 cytoplasmic protein; InterPro: IPR013	97.18
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	97.12
KOG3621	726	consensus WD40 repeat-containing protein [General	97.11
cd00216	488	PQQ_DH Dehydrogenases with pyrrolo-quinoline quino	97.1
PF14583	386	Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C	97.09
KOG2395	644	consensus Protein involved in vacuole import and d	97.05
PF06433	342	Me-amine-dh_H: Methylamine dehydrogenase heavy cha	97.03
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	97.01
KOG1008	783	consensus Uncharacterized conserved protein, conta	96.97
PF00930	353	DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin	96.94
PF08596	395	Lgl_C: Lethal giant larvae(Lgl) like, C-terminal;	96.93
PF08553	794	VID27: VID27 cytoplasmic protein; InterPro: IPR013	96.89
PF02897	414	Peptidase_S9_N: Prolyl oligopeptidase, N-terminal	96.84
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	96.83
PRK13616	591	lipoprotein LpqB; Provisional	96.59
COG3391	381	Uncharacterized conserved protein [Function unknow	96.45
PRK13616	591	lipoprotein LpqB; Provisional	96.33
KOG3621	726	consensus WD40 repeat-containing protein [General	96.27
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	96.23
PF10647	253	Gmad1: Lipoprotein LpqB beta-propeller domain; Int	96.19
PF14783	111	BBS2_Mid: Ciliary BBSome complex subunit 2, middle	96.17
PF12894	47	Apc4_WD40: Anaphase-promoting complex subunit 4 WD	96.17
KOG2079	1206	consensus Vacuolar assembly/sorting protein VPS8 [	96.16
PF03178	321	CPSF_A: CPSF A subunit region; InterPro: IPR004871	96.14
COG3391	381	Uncharacterized conserved protein [Function unknow	95.99
cd00216	488	PQQ_DH Dehydrogenases with pyrrolo-quinoline quino	95.87
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	95.8
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	95.8
PF14783	111	BBS2_Mid: Ciliary BBSome complex subunit 2, middle	95.55
PF15390	671	DUF4613: Domain of unknown function (DUF4613)	95.51
COG3490	366	Uncharacterized protein conserved in bacteria [Fun	95.41
KOG4441	571	consensus Proteins containing BTB/POZ and Kelch do	95.26
PF08596	395	Lgl_C: Lethal giant larvae(Lgl) like, C-terminal;	95.2
KOG1916	1283	consensus Nuclear protein, contains WD40 repeats [	95.19
KOG4649	354	consensus PQQ (pyrrolo-quinoline quinone) repeat p	95.16
KOG1008	783	consensus Uncharacterized conserved protein, conta	95.14
KOG2444	238	consensus WD40 repeat protein [General function pr	95.08
TIGR03075	527	PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan	95.07
PHA02713	557	hypothetical protein; Provisional	94.85
PF03178	321	CPSF_A: CPSF A subunit region; InterPro: IPR004871	94.74
KOG4649	354	consensus PQQ (pyrrolo-quinoline quinone) repeat p	94.66
KOG2079	1206	consensus Vacuolar assembly/sorting protein VPS8 [	94.26
PF14655	415	RAB3GAP2_N: Rab3 GTPase-activating protein regulat	94.24
PF12234	631	Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0	93.99
KOG2444	238	consensus WD40 repeat protein [General function pr	93.97
PF12234	631	Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0	93.91
PF14870	302	PSII_BNR: Photosynthesis system II assembly factor	93.44
PF05694	461	SBP56: 56kDa selenium binding protein (SBP56); Int	93.34
KOG4441	571	consensus Proteins containing BTB/POZ and Kelch do	93.25
PF05694	461	SBP56: 56kDa selenium binding protein (SBP56); Int	93.2
PF07676	39	PD40: WD40-like Beta Propeller Repeat; InterPro: I	93.18
PF10313	43	DUF2415: Uncharacterised protein domain (DUF2415);	92.92
PF11715	547	Nup160: Nucleoporin Nup120/160; InterPro: IPR02171	92.89
KOG4460	741	consensus Nuclear pore complex, Nup88/rNup84 compo	92.81
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	92.77
PF07995	331	GSDH: Glucose / Sorbosone dehydrogenase; InterPro:	92.75
TIGR03074	764	PQQ_membr_DH membrane-bound PQQ-dependent dehydrog	92.59
TIGR02276	42	beta_rpt_yvtn 40-residue YVTN family beta-propelle	92.45
PF15390	671	DUF4613: Domain of unknown function (DUF4613)	92.44
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	92.39
PF04841	410	Vps16_N: Vps16, N-terminal region; InterPro: IPR00	92.23
COG3204	316	Uncharacterized protein conserved in bacteria [Fun	92.13
TIGR02604	367	Piru_Ver_Nterm putative membrane-bound dehydrogena	92.08
KOG1916	1283	consensus Nuclear protein, contains WD40 repeats [	91.85
KOG2395	644	consensus Protein involved in vacuole import and d	91.74
PF07569	219	Hira: TUP1-like enhancer of split; InterPro: IPR01	91.43
PF07569	219	Hira: TUP1-like enhancer of split; InterPro: IPR01	91.39
COG5167	776	VID27 Protein involved in vacuole import and degra	90.91
PF10313	43	DUF2415: Uncharacterised protein domain (DUF2415);	90.72
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	90.54
PF11715	547	Nup160: Nucleoporin Nup120/160; InterPro: IPR02171	90.51
KOG2377	657	consensus Uncharacterized conserved protein [Funct	89.01
PF14655	415	RAB3GAP2_N: Rab3 GTPase-activating protein regulat	88.98
PF05096	264	Glu_cyclase_2: Glutamine cyclotransferase; InterPr	88.49
COG3204	316	Uncharacterized protein conserved in bacteria [Fun	88.32
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	87.69
PF06433	342	Me-amine-dh_H: Methylamine dehydrogenase heavy cha	87.69
PF00780	275	CNH: CNH domain; InterPro: IPR001180 Based on sequ	87.3
PHA02713	557	hypothetical protein; Provisional	87.16
KOG2280	829	consensus Vacuolar assembly/sorting protein VPS16	86.32
PF00780	275	CNH: CNH domain; InterPro: IPR001180 Based on sequ	85.58
PF10647	253	Gmad1: Lipoprotein LpqB beta-propeller domain; Int	85.51
TIGR03075	527	PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan	85.46
PHA03098	534	kelch-like protein; Provisional	83.51
smart00564	33	PQQ beta-propeller repeat. Beta-propeller repeat o	81.15
PF07995	331	GSDH: Glucose / Sorbosone dehydrogenase; InterPro:	80.84
PF07676	39	PD40: WD40-like Beta Propeller Repeat; InterPro: I	80.61
KOG1897	1096	consensus Damage-specific DNA binding complex, sub	80.55
PF12657	173	TFIIIC_delta: Transcription factor IIIC subunit de	80.45
PF02897	414	Peptidase_S9_N: Prolyl oligopeptidase, N-terminal	80.29

>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]

Probab=100.00  E-value=9.5e-55  Score=334.93  Aligned_cols=302  Identities=58%  Similarity=0.976  Sum_probs=280.5

Q ss_pred             CCcccccccccceeEEEEccCCCEEEEeeCCCCeEEEeCCCCcEEEEecCCCCceEEEEECCCCCeEEEeeCCCcEEEEE
Q 021399            1 MRPILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWN   80 (313)
Q Consensus         1 ~~~~~l~~h~~~v~~~~fs~~g~~l~s~s~d~~i~iw~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~v~vWd   80 (313)
                      |||+.|+||+.+++.+.|+.+|.+|+||++|.++.||-..+|+.+.+++||+++|||++.+-+.+.++||+.|.++++||
T Consensus         1 mrpi~l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGerlGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWD   80 (327)
T KOG0643|consen    1 MRPILLQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGERLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWD   80 (327)
T ss_pred             CCccccccCccccceEEecCCCcEEEEecCCCCceEEEecCCceeeeecCCCceEEEEEecCCcceeeeccccceeEEEE
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCeEEEEecCCCCeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCC-CCCCceEEEecCCCCceEEEEEccCCC
Q 021399           81 VETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPA-DQGGESVLILKGPQGRINRAVWGPLNR  159 (313)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~i~~~~~~~~~~  159 (313)
                      +++|+++..+....++..+.|..++.++++.++..+.....+.+.++..+.. ..+.++.+.+..+.+.++.+.|.|.++
T Consensus        81 v~tGk~la~~k~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~  160 (327)
T KOG0643|consen   81 VETGKQLATWKTNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLGE  160 (327)
T ss_pred             cCCCcEEEEeecCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeecccCC
Confidence            9999999999999999999999999999999988777666677777665442 234566888888899999999999999


Q ss_pred             EEEEeeCCCeEEEEECCCCceeeecccccCceeceEEEEECCCCCEEEEeeCCCcEEEEECCCCcEEEEEecCCceeEEE
Q 021399          160 TIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTERPVNAVT  239 (313)
Q Consensus       160 ~i~t~~~d~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~  239 (313)
                      .|++|.+||.|.+||.+++..+-..  ...|+..|+.+.+++|..+++++|.|.+-++||.++.++++++..+.|+|+++
T Consensus       161 ~ii~Ghe~G~is~~da~~g~~~v~s--~~~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl~v~Kty~te~PvN~aa  238 (327)
T KOG0643|consen  161 TIIAGHEDGSISIYDARTGKELVDS--DEEHSSKINDLQFSRDRTYFITGSKDTTAKLVDVRTLEVLKTYTTERPVNTAA  238 (327)
T ss_pred             EEEEecCCCcEEEEEcccCceeeec--hhhhccccccccccCCcceEEecccCccceeeeccceeeEEEeeeccccccee
Confidence            9999999999999999998655432  24588899999999999999999999999999999999999999999999999


Q ss_pred             eccCCCEEEEcccccCceeEeeccCCCceeeeeeehhhhhhhccccccccceeEEEECCCCCeeE
Q 021399          240 MSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKRYG  304 (313)
Q Consensus       240 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~fspdgk~~~  304 (313)
                      ++|..+.++.+||.+...|.....|.++||.+||+....++++.++||-+||++|||+||||-++
T Consensus       239 isP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHFGPINsvAfhPdGksYs  303 (327)
T KOG0643|consen  239 ISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHFGPINSVAFHPDGKSYS  303 (327)
T ss_pred             cccccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhccccccccCcceeEECCCCcccc
Confidence            99999999999999999999999999999999999999999999999999999999999999875

>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=7.9e-43  Score=281.28  Aligned_cols=274  Identities=25%  Similarity=0.417  Sum_probs=214.9

Q ss_pred             cccccccceeEEEEccCCCEEEEeeCCCCeEEEeCCCCcEEEEecCCCCceEEEEECCCCCeEEEeeCCCcEEEEECCCC
Q 021399            5 LMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETG   84 (313)
Q Consensus         5 ~l~~h~~~v~~~~fs~~g~~l~s~s~d~~i~iw~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~v~vWd~~~~   84 (313)
                      .+.||.++|.|++|+|+|++|+||+.|.++|+||+.+.++..+.++|..-|.|++|+|||+.++||+.||+|++||+.++
T Consensus       110 S~~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp~~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~lwdpktg  189 (480)
T KOG0271|consen  110 SIAGHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTETPLFTCKGHKNWVLCVAWSPDGKKIASGSKDGSIRLWDPKTG  189 (480)
T ss_pred             ccCCCCCcEEEEEecCCCceEEecCCCceEEeeccCCCCcceeecCCccEEEEEEECCCcchhhccccCCeEEEecCCCC
Confidence            47899999999999999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             eEEEEe--cCCCCeeEEEeecCC-----eEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEccC
Q 021399           85 AQLFTF--NFDSPARSVDFAVGD-----KLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPL  157 (313)
Q Consensus        85 ~~~~~~--~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~  157 (313)
                      +++-..  .+...+..+.|.|..     ..++.+     ..++...+|++.      .+..++.+.+|..+|+++.|.-+
T Consensus       190 ~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~-----skDg~vrIWd~~------~~~~~~~lsgHT~~VTCvrwGG~  258 (480)
T KOG0271|consen  190 QQIGRALRGHKKWITALAWEPLHLVPPCRRLASS-----SKDGSVRIWDTK------LGTCVRTLSGHTASVTCVRWGGE  258 (480)
T ss_pred             CcccccccCcccceeEEeecccccCCCccceecc-----cCCCCEEEEEcc------CceEEEEeccCccceEEEEEcCC
Confidence            876432  234456677776532     111111     123334444432      24466777888888888887754


Q ss_pred             CCEEEEeeCCCeEEEEECCCCceeeecc----------------------------------------------------
Q 021399          158 NRTIISAGEDAIVRIWDTETGKLLKESD----------------------------------------------------  185 (313)
Q Consensus       158 ~~~i~t~~~d~~i~lwd~~~~~~~~~~~----------------------------------------------------  185 (313)
                      + +|.+|+.|++|++|+...+.+++++.                                                    
T Consensus       259 g-liySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~e  337 (480)
T KOG0271|consen  259 G-LIYSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGE  337 (480)
T ss_pred             c-eEEecCCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcc
Confidence            3 56777777777777766544333221                                                    


Q ss_pred             ------------------------cccCceeceEEEEECCCCCEEEEeeCCCcEEEEECCCCcEEEEEe-cCCceeEEEe
Q 021399          186 ------------------------KETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYV-TERPVNAVTM  240 (313)
Q Consensus       186 ------------------------~~~~h~~~v~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~-~~~~~~~~~~  240 (313)
                                              ..++|...|+.+.||||+.+|||+|.|..|++||.++|+.+.++. +-..+.-++|
T Consensus       338 rlVSgsDd~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tGk~lasfRGHv~~VYqvaw  417 (480)
T KOG0271|consen  338 RLVSGSDDFTLFLWNPFKSKKPITRMTGHQALVNHVSFSPDGRYIASASFDKSVKLWDGRTGKFLASFRGHVAAVYQVAW  417 (480)
T ss_pred             eeEEecCCceEEEecccccccchhhhhchhhheeeEEECCCccEEEEeecccceeeeeCCCcchhhhhhhccceeEEEEe
Confidence                                    113677889999999999999999999999999999999999987 5678999999


Q ss_pred             ccCCCEEEEcccccCceeEeeccCCCceeeeeeehhhhhhhccccccccceeEEEECCCCCeeE
Q 021399          241 SPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKRYG  304 (313)
Q Consensus       241 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~fspdgk~~~  304 (313)
                      +.+..-++. ++.|.             .+++|+..+.+....+.||...|+++.|+|||++.+
T Consensus       418 saDsRLlVS-~SkDs-------------TLKvw~V~tkKl~~DLpGh~DEVf~vDwspDG~rV~  467 (480)
T KOG0271|consen  418 SADSRLLVS-GSKDS-------------TLKVWDVRTKKLKQDLPGHADEVFAVDWSPDGQRVA  467 (480)
T ss_pred             ccCccEEEE-cCCCc-------------eEEEEEeeeeeecccCCCCCceEEEEEecCCCceee
Confidence            998765554 44443             246777777777778899999999999999999876

>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]

Probab=100.00  E-value=1.6e-41  Score=276.68  Aligned_cols=270  Identities=24%  Similarity=0.369  Sum_probs=230.9

Q ss_pred             ccccceeEEEEccCCCEEEEeeCCCCeEEEeCCCCcEEEEecCCCCceEEEEECCC--CCeEEEeeCCCcEEEEECCCCe
Q 021399            8 GHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRD--SMTLITGSADQTAKLWNVETGA   85 (313)
Q Consensus         8 ~h~~~v~~~~fs~~g~~l~s~s~d~~i~iw~~~~~~~~~~~~~H~~~V~~~~~~~~--~~~l~s~s~D~~v~vWd~~~~~   85 (313)
                      |-+.+|..+.||+|++.|+|||.+|.++||...+...+.+|+||...|.++.|+|.  +..++||+.||++++|++++..
T Consensus       173 gd~rPis~~~fS~ds~~laT~swsG~~kvW~~~~~~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e~  252 (459)
T KOG0272|consen  173 GDTRPISGCSFSRDSKHLATGSWSGLVKVWSVPQCNLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQET  252 (459)
T ss_pred             cCCCcceeeEeecCCCeEEEeecCCceeEeecCCcceeEEEeccccceeeEEEccCCCccceeeeccCCceeeeccCCCc
Confidence            56778999999999999999999999999999999999999999999999999997  5689999999999999998877


Q ss_pred             EEEEec-CCCCeeEEEeecCCeEEEEEC-CCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEccCCCEEEE
Q 021399           86 QLFTFN-FDSPARSVDFAVGDKLAVITT-DPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIIS  163 (313)
Q Consensus        86 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~t  163 (313)
                      ++..+. +...+..+.|+|.++++...+ +..+      ++|++      .....+.-.+||...|.+++|+|+|..++|
T Consensus       253 ~l~~l~gH~~RVs~VafHPsG~~L~TasfD~tW------RlWD~------~tk~ElL~QEGHs~~v~~iaf~~DGSL~~t  320 (459)
T KOG0272|consen  253 PLQDLEGHLARVSRVAFHPSGKFLGTASFDSTW------RLWDL------ETKSELLLQEGHSKGVFSIAFQPDGSLAAT  320 (459)
T ss_pred             chhhhhcchhhheeeeecCCCceeeecccccch------hhccc------ccchhhHhhcccccccceeEecCCCceeec
Confidence            666554 345677888999888766543 2222      22332      233455667899999999999999999999


Q ss_pred             eeCCCeEEEEECCCCceeeecccccCceeceEEEEECCCCCEEEEeeCCCcEEEEECCCCcEEEEEec-CCceeEEEecc
Q 021399          164 AGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVT-ERPVNAVTMSP  242 (313)
Q Consensus       164 ~~~d~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~-~~~~~~~~~~p  242 (313)
                      ||.|..=+|||++++.++..+.   +|...|.+++|+|+|..|||||.|++++|||++.-.++.++.. ...|..|.|+|
T Consensus       321 GGlD~~~RvWDlRtgr~im~L~---gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~ly~ipAH~nlVS~Vk~~p  397 (459)
T KOG0272|consen  321 GGLDSLGRVWDLRTGRCIMFLA---GHIKEILSVAFSPNGYHLATGSSDNTCKVWDLRMRSELYTIPAHSNLVSQVKYSP  397 (459)
T ss_pred             cCccchhheeecccCcEEEEec---ccccceeeEeECCCceEEeecCCCCcEEEeeecccccceecccccchhhheEecc
Confidence            9999999999999999877654   7999999999999999999999999999999999888888764 45688899999


Q ss_pred             CCCEEEEcccccCceeEeeccCCCceeeeeeehhhhhhhccccccccceeEEEECCCCCeeEE
Q 021399          243 LLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKRYGF  305 (313)
Q Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~fspdgk~~~~  305 (313)
                      ..++.+++++.|..             +++|...+..+++.+.||.+.|.+++++|||..++-
T Consensus       398 ~~g~fL~TasyD~t-------------~kiWs~~~~~~~ksLaGHe~kV~s~Dis~d~~~i~t  447 (459)
T KOG0272|consen  398 QEGYFLVTASYDNT-------------VKIWSTRTWSPLKSLAGHEGKVISLDISPDSQAIAT  447 (459)
T ss_pred             cCCeEEEEcccCcc-------------eeeecCCCcccchhhcCCccceEEEEeccCCceEEE
Confidence            88888888777653             577888888899999999999999999999988764

>KOG0286 consensus G-protein beta subunit [General function prediction only]

Probab=100.00  E-value=6.1e-38  Score=244.96  Aligned_cols=272  Identities=20%  Similarity=0.337  Sum_probs=229.3

Q ss_pred             ccccccccceeEEEEccCCCEEEEeeCCCCeEEEeCCCCcEEEEecCCCCceEEEEECCCCCeEEEeeCCCcEEEEECCC
Q 021399            4 ILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVET   83 (313)
Q Consensus         4 ~~l~~h~~~v~~~~fs~~g~~l~s~s~d~~i~iw~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~v~vWd~~~   83 (313)
                      ++|+||.+.|+++.|++|.++|+|+|.||.+.|||.-+....+.+.-...-|..++|+|.|+.++.||.|+..-||++.+
T Consensus        49 r~LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~haipl~s~WVMtCA~sPSg~~VAcGGLdN~Csiy~ls~  128 (343)
T KOG0286|consen   49 RTLKGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVHAIPLPSSWVMTCAYSPSGNFVACGGLDNKCSIYPLST  128 (343)
T ss_pred             EEecccccceeeeEecCCcCeEEeeccCCeEEEEEcccccceeEEecCceeEEEEEECCCCCeEEecCcCceeEEEeccc
Confidence            59999999999999999999999999999999999998888888887788899999999999999999999999999975


Q ss_pred             C--eE---E-EEe-cCCCCeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEcc
Q 021399           84 G--AQ---L-FTF-NFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGP  156 (313)
Q Consensus        84 ~--~~---~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~  156 (313)
                      .  +.   + ..+ .+..=..++.|.++.+++..+.+..      ..+|++      +.+..+..+.+|.+.|.++.++|
T Consensus       129 ~d~~g~~~v~r~l~gHtgylScC~f~dD~~ilT~SGD~T------CalWDi------e~g~~~~~f~GH~gDV~slsl~p  196 (343)
T KOG0286|consen  129 RDAEGNVRVSRELAGHTGYLSCCRFLDDNHILTGSGDMT------CALWDI------ETGQQTQVFHGHTGDVMSLSLSP  196 (343)
T ss_pred             ccccccceeeeeecCccceeEEEEEcCCCceEecCCCce------EEEEEc------ccceEEEEecCCcccEEEEecCC
Confidence            4  21   1 112 2334456777888777776665533      334444      34678889999999999999999


Q ss_pred             -CCCEEEEeeCCCeEEEEECCCCceeeecccccCceeceEEEEECCCCCEEEEeeCCCcEEEEECCCCcEEEEEecC---
Q 021399          157 -LNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTE---  232 (313)
Q Consensus       157 -~~~~i~t~~~d~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~---  232 (313)
                       +++.|++|+-|+.-+|||++.+.+.+.+.   +|...|++++|.|+|.-|++||.|+++|+||+|..+.+..+.++   
T Consensus       197 ~~~ntFvSg~cD~~aklWD~R~~~c~qtF~---ghesDINsv~ffP~G~afatGSDD~tcRlyDlRaD~~~a~ys~~~~~  273 (343)
T KOG0286|consen  197 SDGNTFVSGGCDKSAKLWDVRSGQCVQTFE---GHESDINSVRFFPSGDAFATGSDDATCRLYDLRADQELAVYSHDSII  273 (343)
T ss_pred             CCCCeEEecccccceeeeeccCcceeEeec---ccccccceEEEccCCCeeeecCCCceeEEEeecCCcEEeeeccCccc
Confidence             89999999999999999999998888775   79999999999999999999999999999999998888888653   


Q ss_pred             CceeEEEeccCCCEEEEcccccCceeEeeccCCCceeeeeeehhhhhhhccccccccceeEEEECCCCCeeE
Q 021399          233 RPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKRYG  304 (313)
Q Consensus       233 ~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~fspdgk~~~  304 (313)
                      .++++++|+-.|..++++.. |.             ....||...++.+..+.||.++|++|..+|||--++
T Consensus       274 ~gitSv~FS~SGRlLfagy~-d~-------------~c~vWDtlk~e~vg~L~GHeNRvScl~~s~DG~av~  331 (343)
T KOG0286|consen  274 CGITSVAFSKSGRLLFAGYD-DF-------------TCNVWDTLKGERVGVLAGHENRVSCLGVSPDGMAVA  331 (343)
T ss_pred             CCceeEEEcccccEEEeeec-CC-------------ceeEeeccccceEEEeeccCCeeEEEEECCCCcEEE
Confidence            46899999999988776532 22             235678777888888999999999999999986554

>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]

Probab=100.00  E-value=5.8e-38  Score=243.60  Aligned_cols=231  Identities=24%  Similarity=0.354  Sum_probs=191.1

Q ss_pred             ccccccccceeEEEEccCCCEEEEeeCCCCeEEEeCCCCcEEEEecCCCCceEEEEECCCCCeEEEeeCCCcEEEEECCC
Q 021399            4 ILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVET   83 (313)
Q Consensus         4 ~~l~~h~~~v~~~~fs~~g~~l~s~s~d~~i~iw~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~v~vWd~~~   83 (313)
                      +.|.||+..|..+..++||++.+|+|.|+++++||+.+++....|.||...|.+++|++|++.++|||+|++|++|++-.
T Consensus        57 r~~~GHsH~v~dv~~s~dg~~alS~swD~~lrlWDl~~g~~t~~f~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~g  136 (315)
T KOG0279|consen   57 RRLTGHSHFVSDVVLSSDGNFALSASWDGTLRLWDLATGESTRRFVGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTLG  136 (315)
T ss_pred             eeeeccceEecceEEccCCceEEeccccceEEEEEecCCcEEEEEEecCCceEEEEecCCCceeecCCCcceeeeeeecc
Confidence            36899999999999999999999999999999999999999999999999999999999999999999999999999764


Q ss_pred             CeEEEEecCCCCeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEccC--CCEE
Q 021399           84 GAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPL--NRTI  161 (313)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~~~i  161 (313)
                      . +..+.                                                  .-.++.+-|.++.|+|.  ...|
T Consensus       137 ~-ck~t~--------------------------------------------------~~~~~~~WVscvrfsP~~~~p~I  165 (315)
T KOG0279|consen  137 V-CKYTI--------------------------------------------------HEDSHREWVSCVRFSPNESNPII  165 (315)
T ss_pred             c-EEEEE--------------------------------------------------ecCCCcCcEEEEEEcCCCCCcEE
Confidence            3 21111                                                  00112467889999998  6899


Q ss_pred             EEeeCCCeEEEEECCCCceeeecccccCceeceEEEEECCCCCEEEEeeCCCcEEEEECCCCcEEEEEecCCceeEEEec
Q 021399          162 ISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTERPVNAVTMS  241 (313)
Q Consensus       162 ~t~~~d~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~  241 (313)
                      ++++.|+++++||+.+-+....+   .+|++.++.+++||||+.+++|+.||.+.+||++.++++..+.+...|++++|+
T Consensus       166 vs~s~DktvKvWnl~~~~l~~~~---~gh~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k~lysl~a~~~v~sl~fs  242 (315)
T KOG0279|consen  166 VSASWDKTVKVWNLRNCQLRTTF---IGHSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEGKNLYSLEAFDIVNSLCFS  242 (315)
T ss_pred             EEccCCceEEEEccCCcchhhcc---ccccccEEEEEECCCCCEEecCCCCceEEEEEccCCceeEeccCCCeEeeEEec
Confidence            99999999999999886655443   479999999999999999999999999999999999999999888899999999


Q ss_pred             cCCCEEEEcccccCceeEeeccCCCceeeeeeehhhhhhhcccc----cc-----ccceeEEEECCCCCee
Q 021399          242 PLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVK----GH-----FGPINALAFNPDGKRY  303 (313)
Q Consensus       242 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~h-----~~~V~~~~fspdgk~~  303 (313)
                      |....++++-+.               .+++||.++...+.+++    +-     .-.-.+++||+||..+
T Consensus       243 pnrywL~~at~~---------------sIkIwdl~~~~~v~~l~~d~~g~s~~~~~~~clslaws~dG~tL  298 (315)
T KOG0279|consen  243 PNRYWLCAATAT---------------SIKIWDLESKAVVEELKLDGIGPSSKAGDPICLSLAWSADGQTL  298 (315)
T ss_pred             CCceeEeeccCC---------------ceEEEeccchhhhhhccccccccccccCCcEEEEEEEcCCCcEE
Confidence            987766655432               24566665555544332    11     2234789999999874

>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]

Probab=100.00  E-value=5.6e-38  Score=256.07  Aligned_cols=234  Identities=21%  Similarity=0.326  Sum_probs=205.3

Q ss_pred             ccccccccceeEEEEccC--CCEEEEeeCCCCeEEEeCCCCcEEEEecCCCCceEEEEECCCCCeEEEeeCCCcEEEEEC
Q 021399            4 ILMKGHERPLTYLKYNKD--GDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNV   81 (313)
Q Consensus         4 ~~l~~h~~~v~~~~fs~~--g~~l~s~s~d~~i~iw~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~v~vWd~   81 (313)
                      ++|+||+..|.++.|+|.  +..|+||+.||++++|++++.+++..+.+|...|..++|+|+|++|+|++.|.+-++||+
T Consensus       211 ~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e~~l~~l~gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~  290 (459)
T KOG0272|consen  211 QTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQETPLQDLEGHLARVSRVAFHPSGKFLGTASFDSTWRLWDL  290 (459)
T ss_pred             EEEeccccceeeEEEccCCCccceeeeccCCceeeeccCCCcchhhhhcchhhheeeeecCCCceeeecccccchhhccc
Confidence            589999999999999997  679999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCeEEEEe-cCCCCeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEccCCCE
Q 021399           82 ETGAQLFTF-NFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRT  160 (313)
Q Consensus        82 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~  160 (313)
                      ++++.+... .+...+.++.|.+++.+++...     ++...++|++      .++..++.+.+|..+|.++.|+|+|..
T Consensus       291 ~tk~ElL~QEGHs~~v~~iaf~~DGSL~~tGG-----lD~~~RvWDl------Rtgr~im~L~gH~k~I~~V~fsPNGy~  359 (459)
T KOG0272|consen  291 ETKSELLLQEGHSKGVFSIAFQPDGSLAATGG-----LDSLGRVWDL------RTGRCIMFLAGHIKEILSVAFSPNGYH  359 (459)
T ss_pred             ccchhhHhhcccccccceeEecCCCceeeccC-----ccchhheeec------ccCcEEEEecccccceeeEeECCCceE
Confidence            998765433 3556788899998887765432     2333344444      457889999999999999999999999


Q ss_pred             EEEeeCCCeEEEEECCCCceeeecccccCceeceEEEEECC-CCCEEEEeeCCCcEEEEECCCCcEEEEEe-cCCceeEE
Q 021399          161 IISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAA-DGSHFLTGSLDKSAKLWDARTLELIKTYV-TERPVNAV  238 (313)
Q Consensus       161 i~t~~~d~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~-~~~~l~s~s~dg~i~iwd~~~~~~~~~~~-~~~~~~~~  238 (313)
                      ++|||.|++++|||++..+++..+   .+|...|+.|.|+| .|.+|+|+|.|++++||..++..+++++. ++..|.++
T Consensus       360 lATgs~Dnt~kVWDLR~r~~ly~i---pAH~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~~~~ksLaGHe~kV~s~  436 (459)
T KOG0272|consen  360 LATGSSDNTCKVWDLRMRSELYTI---PAHSNLVSQVKYSPQEGYFLVTASYDNTVKIWSTRTWSPLKSLAGHEGKVISL  436 (459)
T ss_pred             EeecCCCCcEEEeeecccccceec---ccccchhhheEecccCCeEEEEcccCcceeeecCCCcccchhhcCCccceEEE
Confidence            999999999999999987775544   47999999999998 78899999999999999999999999986 57789999


Q ss_pred             EeccCCCEEEEcc
Q 021399          239 TMSPLLDHVVLGG  251 (313)
Q Consensus       239 ~~~p~~~~~~~~~  251 (313)
                      ..+|+++.++.++
T Consensus       437 Dis~d~~~i~t~s  449 (459)
T KOG0272|consen  437 DISPDSQAIATSS  449 (459)
T ss_pred             EeccCCceEEEec
Confidence            9999999887764

>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]

Probab=100.00  E-value=9.3e-36  Score=246.18  Aligned_cols=269  Identities=25%  Similarity=0.469  Sum_probs=224.2

Q ss_pred             cceeEEEEccCCCEEEEeeCCCCeEEEeCCCCcEEEEecCCCCceEEEEECCCCCeEEEeeCCCcEEEEECCCCeEEEEe
Q 021399           11 RPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTF   90 (313)
Q Consensus        11 ~~v~~~~fs~~g~~l~s~s~d~~i~iw~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~v~vWd~~~~~~~~~~   90 (313)
                      +.|++|+|+.+|..||+|+.||.+|||+ .+|.++.+|..|+++|+++.|+..|+++++++.|+++.+||..++...+.+
T Consensus       236 kdVT~L~Wn~~G~~LatG~~~G~~riw~-~~G~l~~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~~q~f  314 (524)
T KOG0273|consen  236 KDVTSLDWNNDGTLLATGSEDGEARIWN-KDGNLISTLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTVKQQF  314 (524)
T ss_pred             CCcceEEecCCCCeEEEeecCcEEEEEe-cCchhhhhhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCceEEEee
Confidence            5799999999999999999999999998 578888999999999999999999999999999999999999999888877


Q ss_pred             cCCCCe-eEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEccCCCEEEEeeCCCe
Q 021399           91 NFDSPA-RSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAI  169 (313)
Q Consensus        91 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~t~~~d~~  169 (313)
                      .+.... ..+.|...+.++...++..      +++..+.      ...++..+.+|+++|+.+.|+|.+..++++++|++
T Consensus       315 ~~~s~~~lDVdW~~~~~F~ts~td~~------i~V~kv~------~~~P~~t~~GH~g~V~alk~n~tg~LLaS~SdD~T  382 (524)
T KOG0273|consen  315 EFHSAPALDVDWQSNDEFATSSTDGC------IHVCKVG------EDRPVKTFIGHHGEVNALKWNPTGSLLASCSDDGT  382 (524)
T ss_pred             eeccCCccceEEecCceEeecCCCce------EEEEEec------CCCcceeeecccCceEEEEECCCCceEEEecCCCe
Confidence            765544 6788888787776655533      3333332      23467788899999999999999999999999999


Q ss_pred             EEEEECCCCceeeecccccCceeceEEEEECCCCC---------EEEEeeCCCcEEEEECCCCcEEEEE-ecCCceeEEE
Q 021399          170 VRIWDTETGKLLKESDKETGHKKTITSLAKAADGS---------HFLTGSLDKSAKLWDARTLELIKTY-VTERPVNAVT  239 (313)
Q Consensus       170 i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~---------~l~s~s~dg~i~iwd~~~~~~~~~~-~~~~~~~~~~  239 (313)
                      ++||..........+   .+|+..|..+.|+|+|.         .+++++.|++|++||+..+.++.++ .+..+|.+++
T Consensus       383 lkiWs~~~~~~~~~l---~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~kH~~pVysva  459 (524)
T KOG0273|consen  383 LKIWSMGQSNSVHDL---QAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTLMKHQEPVYSVA  459 (524)
T ss_pred             eEeeecCCCcchhhh---hhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEeeccCCCceEEEE
Confidence            999998776554433   36999999999999765         5999999999999999999999999 5778999999


Q ss_pred             eccCCCEEEEcccccCceeEeeccCCCceeeeeeehhhhhhhccccccccceeEEEECCCCCeeEEEEEEE
Q 021399          240 MSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKRYGFLLLQI  310 (313)
Q Consensus       240 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~fspdgk~~~~~~~~~  310 (313)
                      |+|++.+++.+ ..|+ .            +.+|+..+++.++..++ .+.|+.+.||-+|.+++-++...
T Consensus       460 fS~~g~ylAsG-s~dg-~------------V~iws~~~~~l~~s~~~-~~~Ifel~Wn~~G~kl~~~~sd~  515 (524)
T KOG0273|consen  460 FSPNGRYLASG-SLDG-C------------VHIWSTKTGKLVKSYQG-TGGIFELCWNAAGDKLGACASDG  515 (524)
T ss_pred             ecCCCcEEEec-CCCC-e------------eEeccccchheeEeecC-CCeEEEEEEcCCCCEEEEEecCC
Confidence            99999987654 3332 2            34567777777777665 56699999999999999887654

>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]

Probab=100.00  E-value=1.5e-35  Score=230.27  Aligned_cols=233  Identities=26%  Similarity=0.407  Sum_probs=195.2

Q ss_pred             cccccccceeEEEEccC-CCEEEEeeCCCCeEEEeCC-----CCcEEEEecCCCCceEEEEECCCCCeEEEeeCCCcEEE
Q 021399            5 LMKGHERPLTYLKYNKD-GDLLFSCAKDHTPTVWFAD-----NGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKL   78 (313)
Q Consensus         5 ~l~~h~~~v~~~~fs~~-g~~l~s~s~d~~i~iw~~~-----~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~v~v   78 (313)
                      +|++|++.|+.++-.+. .+.|++++.|..+.+|++.     .|..++.++||+..|..+..++||++++|+|.|+++++
T Consensus        10 tl~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~dg~~alS~swD~~lrl   89 (315)
T KOG0279|consen   10 TLEGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSSDGNFALSASWDGTLRL   89 (315)
T ss_pred             eecCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCccccCceeeeeeccceEecceEEccCCceEEeccccceEEE
Confidence            68999999999999887 4689999999999999765     45678899999999999999999999999999999999


Q ss_pred             EECCCCeEEEEecCCCCeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEccCC
Q 021399           79 WNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLN  158 (313)
Q Consensus        79 Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~  158 (313)
                      ||+.+++..                                                    ..+.+|...+.+++++|+.
T Consensus        90 WDl~~g~~t----------------------------------------------------~~f~GH~~dVlsva~s~dn  117 (315)
T KOG0279|consen   90 WDLATGEST----------------------------------------------------RRFVGHTKDVLSVAFSTDN  117 (315)
T ss_pred             EEecCCcEE----------------------------------------------------EEEEecCCceEEEEecCCC
Confidence            999876533                                                    3456788889999999999


Q ss_pred             CEEEEeeCCCeEEEEECCCCceeeecccccCceeceEEEEECCC--CCEEEEeeCCCcEEEEECCCCcEEEEEec-CCce
Q 021399          159 RTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAAD--GSHFLTGSLDKSAKLWDARTLELIKTYVT-ERPV  235 (313)
Q Consensus       159 ~~i~t~~~d~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~--~~~l~s~s~dg~i~iwd~~~~~~~~~~~~-~~~~  235 (313)
                      +.|++|+.|.+|++|++..........  .+|++.|.++.|+|+  ..+|+++|.|+++|+||+++.+...++.. ...+
T Consensus       118 ~qivSGSrDkTiklwnt~g~ck~t~~~--~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~~~~gh~~~v  195 (315)
T KOG0279|consen  118 RQIVSGSRDKTIKLWNTLGVCKYTIHE--DSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQLRTTFIGHSGYV  195 (315)
T ss_pred             ceeecCCCcceeeeeeecccEEEEEec--CCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcchhhccccccccE
Confidence            999999999999999987655443322  245899999999998  67999999999999999999998887764 5679


Q ss_pred             eEEEeccCCCEEEEcccccCceeEeeccCCCceeeeeeehhhhhhhccccccccceeEEEECCCCCeeEEEEE
Q 021399          236 NAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKRYGFLLL  308 (313)
Q Consensus       236 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~fspdgk~~~~~~~  308 (313)
                      +.++++|+|.. +++||.|+             ++.+||...++.+..+ .|..+|.+++|+|+  ++.+|++
T Consensus       196 ~t~~vSpDGsl-casGgkdg-------------~~~LwdL~~~k~lysl-~a~~~v~sl~fspn--rywL~~a  251 (315)
T KOG0279|consen  196 NTVTVSPDGSL-CASGGKDG-------------EAMLWDLNEGKNLYSL-EAFDIVNSLCFSPN--RYWLCAA  251 (315)
T ss_pred             EEEEECCCCCE-EecCCCCc-------------eEEEEEccCCceeEec-cCCCeEeeEEecCC--ceeEeec
Confidence            99999999875 44555544             3457777777766555 58999999999998  6777765

>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]

Probab=100.00  E-value=9.5e-35  Score=243.21  Aligned_cols=276  Identities=21%  Similarity=0.324  Sum_probs=206.8

Q ss_pred             cccccccceeEEEEccCCCEEEEeeCCCCeEEEeCCCCcEEEEec---CCCCceEEEEECCCCCeEEEeeCCCcEEEEEC
Q 021399            5 LMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYR---GHNGAVWCCDVSRDSMTLITGSADQTAKLWNV   81 (313)
Q Consensus         5 ~l~~h~~~v~~~~fs~~g~~l~s~s~d~~i~iw~~~~~~~~~~~~---~H~~~V~~~~~~~~~~~l~s~s~D~~v~vWd~   81 (313)
                      .++.|.+.|+|++|+|||++++|++.||++.+||.++++.+..+.   +|.+.|++++|+||++.|+|+|.|.++||||+
T Consensus       185 s~r~HskFV~~VRysPDG~~Fat~gsDgki~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdV  264 (603)
T KOG0318|consen  185 SFREHSKFVNCVRYSPDGSRFATAGSDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSPDSTQFLTVSADKTIKIWDV  264 (603)
T ss_pred             cccccccceeeEEECCCCCeEEEecCCccEEEEcCCCccEEEEecCCCCccccEEEEEECCCCceEEEecCCceEEEEEe
Confidence            578899999999999999999999999999999999999999998   89999999999999999999999999999999


Q ss_pred             CCCeEEEEecCCCCeeEE---EeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEccCC
Q 021399           82 ETGAQLFTFNFDSPARSV---DFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLN  158 (313)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~  158 (313)
                      .+.+++.++.....+...   .+.+.+.++.++...++..      .+    +.+  ......+.||+..|+.+..+|++
T Consensus       265 s~~slv~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~------ln----~~d--~~~~~~i~GHnK~ITaLtv~~d~  332 (603)
T KOG0318|consen  265 STNSLVSTWPMGSTVEDQQVGCLWQKDHLITVSLSGTINY------LN----PSD--PSVLKVISGHNKSITALTVSPDG  332 (603)
T ss_pred             eccceEEEeecCCchhceEEEEEEeCCeEEEEEcCcEEEE------ec----ccC--CChhheecccccceeEEEEcCCC
Confidence            999998887765442111   1223455555444333221      11    111  23566788999999999999999


Q ss_pred             CEEEEeeCCCeEEEEECCCCceeeec-----------cccc------------------------Cc-------------
Q 021399          159 RTIISAGEDAIVRIWDTETGKLLKES-----------DKET------------------------GH-------------  190 (313)
Q Consensus       159 ~~i~t~~~d~~i~lwd~~~~~~~~~~-----------~~~~------------------------~h-------------  190 (313)
                      .+|.+|+.||.|.-||..++..-+..           ....                        .+             
T Consensus       333 ~~i~SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~la  412 (603)
T KOG0318|consen  333 KTIYSGSYDGHINSWDSGSGTSDRLAGKGHTNQIKGMAASESGELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLA  412 (603)
T ss_pred             CEEEeeccCceEEEEecCCccccccccccccceEEEEeecCCCcEEEEecCCeEEEEecccCcccccceeecCCCceeEE
Confidence            99999999999999997765432110           0000                        00             


Q ss_pred             ------------------------------eeceEEEEECCCCCEEEEeeCCCcEEEEECCCCcEE---EEEecCCceeE
Q 021399          191 ------------------------------KKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELI---KTYVTERPVNA  237 (313)
Q Consensus       191 ------------------------------~~~v~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~---~~~~~~~~~~~  237 (313)
                                                    .....+++++|+++.++.|+.|+.+++|.+...+..   ..+.+..++.+
T Consensus       413 v~~d~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~~~~~vaVGG~Dgkvhvysl~g~~l~ee~~~~~h~a~iT~  492 (603)
T KOG0318|consen  413 VLSDGGTAVVACISDIVLLQDQTKVSSIPIGYESSAVAVSPDGSEVAVGGQDGKVHVYSLSGDELKEEAKLLEHRAAITD  492 (603)
T ss_pred             EcCCCCEEEEEecCcEEEEecCCcceeeccccccceEEEcCCCCEEEEecccceEEEEEecCCcccceeeeecccCCceE
Confidence                                          011456778999999999999999999998875533   33456778999


Q ss_pred             EEeccCCCEEEEcccccCceeEeeccCCCceeeeeeehhhhhhhccccccccceeEEEECCCCCeeEE
Q 021399          238 VTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKRYGF  305 (313)
Q Consensus       238 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~fspdgk~~~~  305 (313)
                      ++++|++.+++++-.  ..-+..||...+......           .--|.+.|++++||||.+++|-
T Consensus       493 vaySpd~~yla~~Da--~rkvv~yd~~s~~~~~~~-----------w~FHtakI~~~aWsP~n~~vAT  547 (603)
T KOG0318|consen  493 VAYSPDGAYLAAGDA--SRKVVLYDVASREVKTNR-----------WAFHTAKINCVAWSPNNKLVAT  547 (603)
T ss_pred             EEECCCCcEEEEecc--CCcEEEEEcccCceecce-----------eeeeeeeEEEEEeCCCceEEEe
Confidence            999999998776532  223444444333322222           2349999999999999998763

>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=6.2e-36  Score=241.56  Aligned_cols=245  Identities=26%  Similarity=0.393  Sum_probs=193.8

Q ss_pred             cccccccceeEEEEccCCCEEEEeeCCCCeEEEeCCCCcEE-EEecCCCCceEEEEECC-----CCCeEEEeeCCCcEEE
Q 021399            5 LMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERL-GTYRGHNGAVWCCDVSR-----DSMTLITGSADQTAKL   78 (313)
Q Consensus         5 ~l~~h~~~v~~~~fs~~g~~l~s~s~d~~i~iw~~~~~~~~-~~~~~H~~~V~~~~~~~-----~~~~l~s~s~D~~v~v   78 (313)
                      +.++|..=|.|++|+|||+.||||+.||.|++||.++++++ ..|++|...|++++|.|     ..++|+|+|.||+|+|
T Consensus       152 t~KgH~~WVlcvawsPDgk~iASG~~dg~I~lwdpktg~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrI  231 (480)
T KOG0271|consen  152 TCKGHKNWVLCVAWSPDGKKIASGSKDGSIRLWDPKTGQQIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRI  231 (480)
T ss_pred             eecCCccEEEEEEECCCcchhhccccCCeEEEecCCCCCcccccccCcccceeEEeecccccCCCccceecccCCCCEEE
Confidence            78999999999999999999999999999999999999875 57999999999999975     5679999999999999


Q ss_pred             EECCCCeEEEEec-CCCCeeEEEeecCCeEEEEECCCceeccccce-------------eeeeee-----------CC--
Q 021399           79 WNVETGAQLFTFN-FDSPARSVDFAVGDKLAVITTDPFMELNSAIH-------------VKRIAR-----------DP--  131 (313)
Q Consensus        79 Wd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~-----------~~--  131 (313)
                      ||+..+.++..+. +..++.++.|.-.+.+...+.+..+.++....             +..+..           ++  
T Consensus       232 Wd~~~~~~~~~lsgHT~~VTCvrwGG~gliySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~  311 (480)
T KOG0271|consen  232 WDTKLGTCVRTLSGHTASVTCVRWGGEGLIYSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTG  311 (480)
T ss_pred             EEccCceEEEEeccCccceEEEEEcCCceEEecCCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhcccccccc
Confidence            9999988876654 56677777765444333333332221111000             000000           00  


Q ss_pred             -----------------------------------------CCCCCceEEEecCCCCceEEEEEccCCCEEEEeeCCCeE
Q 021399          132 -----------------------------------------ADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIV  170 (313)
Q Consensus       132 -----------------------------------------~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~t~~~d~~i  170 (313)
                                                               .....+++..+.+|+..|+.+.|+|++++|++++-|..|
T Consensus       312 ~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSPd~r~IASaSFDkSV  391 (480)
T KOG0271|consen  312 RKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKKPITRMTGHQALVNHVSFSPDGRYIASASFDKSV  391 (480)
T ss_pred             ccCCChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEecccccccchhhhhchhhheeeEEECCCccEEEEeecccce
Confidence                                                     001122333456889999999999999999999999999


Q ss_pred             EEEECCCCceeeecccccCceeceEEEEECCCCCEEEEeeCCCcEEEEECCCCcEEEEEe-cCCceeEEEeccCCCEEEE
Q 021399          171 RIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYV-TERPVNAVTMSPLLDHVVL  249 (313)
Q Consensus       171 ~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~-~~~~~~~~~~~p~~~~~~~  249 (313)
                      +|||..+|+-+..+.   +|-..|.-++|+.|...|+|||.|.++++||+++.+....+. +...+.++.|+|+|..++.
T Consensus       392 kLW~g~tGk~lasfR---GHv~~VYqvawsaDsRLlVS~SkDsTLKvw~V~tkKl~~DLpGh~DEVf~vDwspDG~rV~s  468 (480)
T KOG0271|consen  392 KLWDGRTGKFLASFR---GHVAAVYQVAWSADSRLLVSGSKDSTLKVWDVRTKKLKQDLPGHADEVFAVDWSPDGQRVAS  468 (480)
T ss_pred             eeeeCCCcchhhhhh---hccceeEEEEeccCccEEEEcCCCceEEEEEeeeeeecccCCCCCceEEEEEecCCCceeec
Confidence            999999998876654   799999999999999999999999999999999999988887 5678999999999987665


Q ss_pred             ccc
Q 021399          250 GGG  252 (313)
Q Consensus       250 ~~~  252 (313)
                      +|.
T Consensus       469 ggk  471 (480)
T KOG0271|consen  469 GGK  471 (480)
T ss_pred             CCC
Confidence            543

>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]

Probab=100.00  E-value=3.4e-36  Score=262.87  Aligned_cols=239  Identities=24%  Similarity=0.392  Sum_probs=199.0

Q ss_pred             cccccccceeEEEEccCCCEEEEeeCCCCeEEEeCCCCcEEEEecCCCCceEEEEECCCCCeEEEeeCCCcEEEEECCCC
Q 021399            5 LMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETG   84 (313)
Q Consensus         5 ~l~~h~~~v~~~~fs~~g~~l~s~s~d~~i~iw~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~v~vWd~~~~   84 (313)
                      +|.||.++|+.++|+|+.++|+|+|.|+++|+|.+.+-..+-.++||..+||.+.|+|-|-+|||||.|++.++|.....
T Consensus       446 ~L~GH~GPVyg~sFsPd~rfLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P~GyYFatas~D~tArLWs~d~~  525 (707)
T KOG0263|consen  446 TLYGHSGPVYGCSFSPDRRFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAPRGYYFATASHDQTARLWSTDHN  525 (707)
T ss_pred             EeecCCCceeeeeecccccceeeccCCcceeeeecccceeEEEecCCCcceeeEEecCCceEEEecCCCceeeeeecccC
Confidence            58999999999999999999999999999999999999988889999999999999999999999999999999986542


Q ss_pred             eEEEEecCCCCeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEccCCCEEEEe
Q 021399           85 AQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISA  164 (313)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~t~  164 (313)
                      +                                                    +...+.+|.+.+.++.|+|+..+++||
T Consensus       526 ~----------------------------------------------------PlRifaghlsDV~cv~FHPNs~Y~aTG  553 (707)
T KOG0263|consen  526 K----------------------------------------------------PLRIFAGHLSDVDCVSFHPNSNYVATG  553 (707)
T ss_pred             C----------------------------------------------------chhhhcccccccceEEECCcccccccC
Confidence            2                                                    334556888999999999999999999


Q ss_pred             eCCCeEEEEECCCCceeeecccccCceeceEEEEECCCCCEEEEeeCCCcEEEEECCCCcEEEEEe-cCCceeEEEeccC
Q 021399          165 GEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYV-TERPVNAVTMSPL  243 (313)
Q Consensus       165 ~~d~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~-~~~~~~~~~~~p~  243 (313)
                      |.|.++|+||+.++..++.+   .||.+.|.+++|||+|.+|+||+.||.|++||+.+++++.++. +...+.+++|+.+
T Consensus       554 SsD~tVRlWDv~~G~~VRiF---~GH~~~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~~~~~v~~l~~Ht~ti~SlsFS~d  630 (707)
T KOG0263|consen  554 SSDRTVRLWDVSTGNSVRIF---TGHKGPVTALAFSPCGRYLASGDEDGLIKIWDLANGSLVKQLKGHTGTIYSLSFSRD  630 (707)
T ss_pred             CCCceEEEEEcCCCcEEEEe---cCCCCceEEEEEcCCCceEeecccCCcEEEEEcCCCcchhhhhcccCceeEEEEecC
Confidence            99999999999999988766   4899999999999999999999999999999999999888775 4567999999999


Q ss_pred             CCEEEEcccccCceeEeeccCCCcee-----eeee-------ehhhhhhhccccccccceeEEEECCCC
Q 021399          244 LDHVVLGGGQDASAVTTTDHRAGKFE-----AKFF-------DKILQEEIGGVKGHFGPINALAFNPDG  300 (313)
Q Consensus       244 ~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~-------~~~~~~~~~~~~~h~~~V~~~~fspdg  300 (313)
                      +..++++|+  ++.+.+||.......     +..-       +..+...++.+..-..+|..|.|..-.
T Consensus       631 g~vLasgg~--DnsV~lWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llgs~~tK~tpv~~l~FtrrN  697 (707)
T KOG0263|consen  631 GNVLASGGA--DNSVRLWDLTKVIELLNLGHISTSNSAITQENNASSLLLGSFYTKNTPVVGLHFTRRN  697 (707)
T ss_pred             CCEEEecCC--CCeEEEEEchhhcccccccccccccccccccCCCCcceeeeeeecCceEEEEEEeccc
Confidence            998777665  345667775543322     0000       001122334444556788888887655

>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]

Probab=100.00  E-value=5.2e-35  Score=255.49  Aligned_cols=231  Identities=26%  Similarity=0.447  Sum_probs=200.8

Q ss_pred             ccccccceeEEEEccCCCEEEEeeCCCCeEEEeCCCCc-------------------------------EEEEecCCCCc
Q 021399            6 MKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGE-------------------------------RLGTYRGHNGA   54 (313)
Q Consensus         6 l~~h~~~v~~~~fs~~g~~l~s~s~d~~i~iw~~~~~~-------------------------------~~~~~~~H~~~   54 (313)
                      ...-.+.+.|+.|++|+.+||.|-.|..|++|.+...+                               ...++-||.++
T Consensus       374 ~~nt~~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L~GH~GP  453 (707)
T KOG0263|consen  374 FHNTYQGVTCAEFSDDSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTLYGHSGP  453 (707)
T ss_pred             EEEcCCcceeEeecCCcchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEEeecCCCc
Confidence            34455679999999999999999999999999877311                               23456799999


Q ss_pred             eEEEEECCCCCeEEEeeCCCcEEEEECCCCeEEEEecCCCCeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCC
Q 021399           55 VWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQ  134 (313)
Q Consensus        55 V~~~~~~~~~~~l~s~s~D~~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  134 (313)
                      |..++|+|+.++|+|+|.|+++|+|++.+..++                                               
T Consensus       454 Vyg~sFsPd~rfLlScSED~svRLWsl~t~s~~-----------------------------------------------  486 (707)
T KOG0263|consen  454 VYGCSFSPDRRFLLSCSEDSSVRLWSLDTWSCL-----------------------------------------------  486 (707)
T ss_pred             eeeeeecccccceeeccCCcceeeeecccceeE-----------------------------------------------
Confidence            999999999999999999999999999875432                                               


Q ss_pred             CCceEEEecCCCCceEEEEEccCCCEEEEeeCCCeEEEEECCCCceeeecccccCceeceEEEEECCCCCEEEEeeCCCc
Q 021399          135 GGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKS  214 (313)
Q Consensus       135 ~~~~~~~~~~~~~~i~~~~~~~~~~~i~t~~~d~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~dg~  214 (313)
                           ...+||..+|..+.|+|-|.+|||++.|++-++|......+++.+   .+|...|.|+.|+|+.+++++||.|.+
T Consensus       487 -----V~y~GH~~PVwdV~F~P~GyYFatas~D~tArLWs~d~~~PlRif---aghlsDV~cv~FHPNs~Y~aTGSsD~t  558 (707)
T KOG0263|consen  487 -----VIYKGHLAPVWDVQFAPRGYYFATASHDQTARLWSTDHNKPLRIF---AGHLSDVDCVSFHPNSNYVATGSSDRT  558 (707)
T ss_pred             -----EEecCCCcceeeEEecCCceEEEecCCCceeeeeecccCCchhhh---cccccccceEEECCcccccccCCCCce
Confidence                 334578889999999999999999999999999998877776654   489999999999999999999999999


Q ss_pred             EEEEECCCCcEEEEEe-cCCceeEEEeccCCCEEEEcccccCceeEeeccCCCceeeeeeehhhhhhhccccccccceeE
Q 021399          215 AKLWDARTLELIKTYV-TERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINA  293 (313)
Q Consensus       215 i~iwd~~~~~~~~~~~-~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~  293 (313)
                      +|+||..++..++.+. +..++.+++|+|.|.+++.++ .++             .+.+||...++.+..+.+|.+.|++
T Consensus       559 VRlWDv~~G~~VRiF~GH~~~V~al~~Sp~Gr~LaSg~-ed~-------------~I~iWDl~~~~~v~~l~~Ht~ti~S  624 (707)
T KOG0263|consen  559 VRLWDVSTGNSVRIFTGHKGPVTALAFSPCGRYLASGD-EDG-------------LIKIWDLANGSLVKQLKGHTGTIYS  624 (707)
T ss_pred             EEEEEcCCCcEEEEecCCCCceEEEEEcCCCceEeecc-cCC-------------cEEEEEcCCCcchhhhhcccCceeE
Confidence            9999999999999986 467899999999998876543 332             3678999999999999999999999


Q ss_pred             EEECCCCCeeEE
Q 021399          294 LAFNPDGKRYGF  305 (313)
Q Consensus       294 ~~fspdgk~~~~  305 (313)
                      +.||.||..||.
T Consensus       625 lsFS~dg~vLas  636 (707)
T KOG0263|consen  625 LSFSRDGNVLAS  636 (707)
T ss_pred             EEEecCCCEEEe
Confidence            999999999875

>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]

Probab=100.00  E-value=1.9e-35  Score=240.40  Aligned_cols=267  Identities=24%  Similarity=0.414  Sum_probs=212.0

Q ss_pred             ccceeEEEEccCCCEEEEeeCCCCeEEEeCCCCcEEEEecCCCCceEEEEECCCCCeEEEeeCCCcEEEEECCCCeEEEE
Q 021399           10 ERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFT   89 (313)
Q Consensus        10 ~~~v~~~~fs~~g~~l~s~s~d~~i~iw~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~v~vWd~~~~~~~~~   89 (313)
                      +.+|..++|.|+|+.|++|+..|...+|+...-.....+.+|+.+|.++.|+++++.++||+.+|.||+|++.-......
T Consensus        96 kc~V~~v~WtPeGRRLltgs~SGEFtLWNg~~fnFEtilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnmnnVk~~  175 (464)
T KOG0284|consen   96 KCPVNVVRWTPEGRRLLTGSQSGEFTLWNGTSFNFETILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNMNNVKII  175 (464)
T ss_pred             ccceeeEEEcCCCceeEeecccccEEEecCceeeHHHHhhhhcccceeEEEccCCCEEEEcCCCceEEecccchhhhHHh
Confidence            45788999999999999999999999998743333334579999999999999999999999999999999865433222


Q ss_pred             ecC-CCCeeEEEeec-CCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEccCCCEEEEeeCC
Q 021399           90 FNF-DSPARSVDFAV-GDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGED  167 (313)
Q Consensus        90 ~~~-~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~t~~~d  167 (313)
                      ... ...++.++|+| +.+++.++.+..+.      +|+...      ...-..+.+|.-.+.++.|+|....++++|.|
T Consensus       176 ~ahh~eaIRdlafSpnDskF~t~SdDg~ik------iWdf~~------~kee~vL~GHgwdVksvdWHP~kgLiasgskD  243 (464)
T KOG0284|consen  176 QAHHAEAIRDLAFSPNDSKFLTCSDDGTIK------IWDFRM------PKEERVLRGHGWDVKSVDWHPTKGLIASGSKD  243 (464)
T ss_pred             hHhhhhhhheeccCCCCceeEEecCCCeEE------EEeccC------CchhheeccCCCCcceeccCCccceeEEccCC
Confidence            223 36788999997 55666655554333      333221      11223458899999999999999999999999


Q ss_pred             CeEEEEECCCCceeeecccccCceeceEEEEECCCCCEEEEeeCCCcEEEEECCCCcEEEEEe-cCCceeEEEeccCCCE
Q 021399          168 AIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYV-TERPVNAVTMSPLLDH  246 (313)
Q Consensus       168 ~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~-~~~~~~~~~~~p~~~~  246 (313)
                      ..|++||.+++.++..+.   +|+..|+++.|.+++++|+|+|.|..++++|+++.+.+.++. +...+.+++|+|....
T Consensus       244 nlVKlWDprSg~cl~tlh---~HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~mkEl~~~r~Hkkdv~~~~WhP~~~~  320 (464)
T KOG0284|consen  244 NLVKLWDPRSGSCLATLH---GHKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTMKELFTYRGHKKDVTSLTWHPLNES  320 (464)
T ss_pred             ceeEeecCCCcchhhhhh---hccceEEEEEEcCCCCeeEEccCCceEEEEehhHhHHHHHhhcchhhheeecccccccc
Confidence            999999999999987664   699999999999999999999999999999999888777776 5678999999999999


Q ss_pred             EEEcccccCceeEeeccCCCceeeeeeehhhhhhhcc-ccccccceeEEEECCCCCeeE
Q 021399          247 VVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGG-VKGHFGPINALAFNPDGKRYG  304 (313)
Q Consensus       247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~h~~~V~~~~fspdgk~~~  304 (313)
                      ++++||.|+..+             +|.....+++.. ..+|.+.||+++|+|=|-+|+
T Consensus       321 lftsgg~Dgsvv-------------h~~v~~~~p~~~i~~AHd~~iwsl~~hPlGhil~  366 (464)
T KOG0284|consen  321 LFTSGGSDGSVV-------------HWVVGLEEPLGEIPPAHDGEIWSLAYHPLGHILA  366 (464)
T ss_pred             ceeeccCCCceE-------------EEeccccccccCCCcccccceeeeeccccceeEe
Confidence            999988876543             233222223222 348999999999999776665

>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]

Probab=100.00  E-value=2.6e-34  Score=230.43  Aligned_cols=230  Identities=22%  Similarity=0.353  Sum_probs=202.1

Q ss_pred             ccccccccceeEEEEccCCCEEEEeeCCCCeEEEeCCCCcEEEEecCCCCceEEEEECCCCCeEEEeeCCCcEEEEECCC
Q 021399            4 ILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVET   83 (313)
Q Consensus         4 ~~l~~h~~~v~~~~fs~~g~~l~s~s~d~~i~iw~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~v~vWd~~~   83 (313)
                      +++.||.+=|.|+++.|.+++++||+.|++++|||++++++..++.||-..|..+++|+-..++++++.|+.||.||++.
T Consensus       145 rVi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~LkltltGhi~~vr~vavS~rHpYlFs~gedk~VKCwDLe~  224 (460)
T KOG0285|consen  145 RVISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKLTLTGHIETVRGVAVSKRHPYLFSAGEDKQVKCWDLEY  224 (460)
T ss_pred             hhhhhccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEEeecchhheeeeeeecccCceEEEecCCCeeEEEechh
Confidence            58899999999999999999999999999999999999999999999999999999999888999999999999999987


Q ss_pred             CeEEEEecCCCCeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEccCCCEEEE
Q 021399           84 GAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIIS  163 (313)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~t  163 (313)
                      .+.+.                                                    ..-||-+.|.++..+|.-..++|
T Consensus       225 nkvIR----------------------------------------------------~YhGHlS~V~~L~lhPTldvl~t  252 (460)
T KOG0285|consen  225 NKVIR----------------------------------------------------HYHGHLSGVYCLDLHPTLDVLVT  252 (460)
T ss_pred             hhhHH----------------------------------------------------HhccccceeEEEeccccceeEEe
Confidence            65432                                                    12367778899999999999999


Q ss_pred             eeCCCeEEEEECCCCceeeecccccCceeceEEEEECCCCCEEEEeeCCCcEEEEECCCCcEEEEEec-CCceeEEEecc
Q 021399          164 AGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVT-ERPVNAVTMSP  242 (313)
Q Consensus       164 ~~~d~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~-~~~~~~~~~~p  242 (313)
                      |+.|.++|+||+++...+..+   .||...|..+.+.|....+++||.|++|++||++.++-..++.+ ...+.+++.+|
T Consensus       253 ~grDst~RvWDiRtr~~V~~l---~GH~~~V~~V~~~~~dpqvit~S~D~tvrlWDl~agkt~~tlt~hkksvral~lhP  329 (460)
T KOG0285|consen  253 GGRDSTIRVWDIRTRASVHVL---SGHTNPVASVMCQPTDPQVITGSHDSTVRLWDLRAGKTMITLTHHKKSVRALCLHP  329 (460)
T ss_pred             cCCcceEEEeeecccceEEEe---cCCCCcceeEEeecCCCceEEecCCceEEEeeeccCceeEeeecccceeeEEecCC
Confidence            999999999999987766554   48999999999998888899999999999999999998888764 56799999999


Q ss_pred             CCCEEEEcccccCceeEeeccCCCceeeeeeehhhhhhhccccccccceeEEEECCCCCee
Q 021399          243 LLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKRY  303 (313)
Q Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~fspdgk~~  303 (313)
                      ....++ +++.|              .++-|+...+..++.+++|++.|++++.+.||=++
T Consensus       330 ~e~~fA-Sas~d--------------nik~w~~p~g~f~~nlsgh~~iintl~~nsD~v~~  375 (460)
T KOG0285|consen  330 KENLFA-SASPD--------------NIKQWKLPEGEFLQNLSGHNAIINTLSVNSDGVLV  375 (460)
T ss_pred             chhhhh-ccCCc--------------cceeccCCccchhhccccccceeeeeeeccCceEE
Confidence            876544 44433              35678888888889999999999999999997654

>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=6.8e-33  Score=240.95  Aligned_cols=244  Identities=21%  Similarity=0.359  Sum_probs=193.7

Q ss_pred             cccccccceeEEEEccCCCEEEEeeCCCCeEEEeCCCCcEEEEecCCCCceEEEEECCCCCeEEEeeCCCcEEEEECCCC
Q 021399            5 LMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETG   84 (313)
Q Consensus         5 ~l~~h~~~v~~~~fs~~g~~l~s~s~d~~i~iw~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~v~vWd~~~~   84 (313)
                      -++||...+.|+++||||+++++|+.||+|||||...+.+..+|..|+..|+++.|+..|+.++++|.||+|+.||+...
T Consensus       345 KQQgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC~vTFteHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRY  424 (893)
T KOG0291|consen  345 KQQGHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQSGFCFVTFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRY  424 (893)
T ss_pred             eccccccceeeEEECCCCcEEEeccCCCcEEEEeccCceEEEEeccCCCceEEEEEEecCCEEEEeecCCeEEeeeeccc
Confidence            46799999999999999999999999999999999999999999999999999999999999999999999999999887


Q ss_pred             eEEEEecCCCCe--eEEEeecCCeEEEE-ECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEccCCCEE
Q 021399           85 AQLFTFNFDSPA--RSVDFAVGDKLAVI-TTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTI  161 (313)
Q Consensus        85 ~~~~~~~~~~~~--~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i  161 (313)
                      ..-.++..+.++  .+++..|.+.++++ ..+.+     .+.+|.+.      .++.+-.+.||.++|.+++|+|.+..+
T Consensus       425 rNfRTft~P~p~QfscvavD~sGelV~AG~~d~F-----~IfvWS~q------TGqllDiLsGHEgPVs~l~f~~~~~~L  493 (893)
T KOG0291|consen  425 RNFRTFTSPEPIQFSCVAVDPSGELVCAGAQDSF-----EIFVWSVQ------TGQLLDILSGHEGPVSGLSFSPDGSLL  493 (893)
T ss_pred             ceeeeecCCCceeeeEEEEcCCCCEEEeeccceE-----EEEEEEee------cCeeeehhcCCCCcceeeEEccccCeE
Confidence            776666655443  34455553444443 33321     23444443      456777889999999999999999999


Q ss_pred             EEeeCCCeEEEEECCCCc-eeeecccccCceeceEEEEECCCCCEEEEeeCCCcEEEEECCCCcEEEEEe----------
Q 021399          162 ISAGEDAIVRIWDTETGK-LLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYV----------  230 (313)
Q Consensus       162 ~t~~~d~~i~lwd~~~~~-~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~----------  230 (313)
                      ++++.|.+||+||+.... ..-++    .+...+.+++|.|+|+.|+++..||.|.+||.+.......+.          
T Consensus       494 aS~SWDkTVRiW~if~s~~~vEtl----~i~sdvl~vsfrPdG~elaVaTldgqItf~d~~~~~q~~~IdgrkD~~~gR~  569 (893)
T KOG0291|consen  494 ASGSWDKTVRIWDIFSSSGTVETL----EIRSDVLAVSFRPDGKELAVATLDGQITFFDIKEAVQVGSIDGRKDLSGGRK  569 (893)
T ss_pred             EeccccceEEEEEeeccCceeeeE----eeccceeEEEEcCCCCeEEEEEecceEEEEEhhhceeeccccchhhcccccc
Confidence            999999999999986542 22222    367789999999999999999999999999988665443221          


Q ss_pred             ------c-----CCceeEEEeccCCCEEEEcccccCceeEeeccCC
Q 021399          231 ------T-----ERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRA  265 (313)
Q Consensus       231 ------~-----~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~  265 (313)
                            .     ......++++++|..++++|-+  +.+.+++.+.
T Consensus       570 ~~D~~ta~~sa~~K~Ftti~ySaDG~~IlAgG~s--n~iCiY~v~~  613 (893)
T KOG0291|consen  570 ETDRITAENSAKGKTFTTICYSADGKCILAGGES--NSICIYDVPE  613 (893)
T ss_pred             ccceeehhhcccCCceEEEEEcCCCCEEEecCCc--ccEEEEECch
Confidence                  1     1246789999999998887644  4455555543

>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]

Probab=100.00  E-value=8.1e-33  Score=245.43  Aligned_cols=237  Identities=28%  Similarity=0.451  Sum_probs=197.9

Q ss_pred             ccccccccceeEEEEccCCCEEEEeeCCCCeEEEeC-CCCcEEEEecCCCCceEEEEECCCCCeEEEeeCCCcEEEEECC
Q 021399            4 ILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFA-DNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVE   82 (313)
Q Consensus         4 ~~l~~h~~~v~~~~fs~~g~~l~s~s~d~~i~iw~~-~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~v~vWd~~   82 (313)
                      +.+.+|...|..++|+|+|+++++++.|+++||||+ ..+..++++++|...|++++|+|+++++++|+.|++|+|||++
T Consensus       197 ~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~~~~~~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~  276 (456)
T KOG0266|consen  197 RELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDLKDDGRNLKTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVR  276 (456)
T ss_pred             ccccccccceeeeEECCCCcEEEEecCCceEEEeeccCCCeEEEEecCCCCceEEEEecCCCCEEEEecCCCcEEEEecc
Confidence            356899999999999999999999999999999999 5668999999999999999999999999999999999999998


Q ss_pred             CCeEEEEecCCCCeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEccCCCEEE
Q 021399           83 TGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTII  162 (313)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~  162 (313)
                      +++++                                                    ..+++|.+.|..+.|+++++.++
T Consensus       277 ~~~~~----------------------------------------------------~~l~~hs~~is~~~f~~d~~~l~  304 (456)
T KOG0266|consen  277 TGECV----------------------------------------------------RKLKGHSDGISGLAFSPDGNLLV  304 (456)
T ss_pred             CCeEE----------------------------------------------------EeeeccCCceEEEEECCCCCEEE
Confidence            76543                                                    34467888999999999999999


Q ss_pred             EeeCCCeEEEEECCCCc--eeeecccccCceeceEEEEECCCCCEEEEeeCCCcEEEEECCCCcEEEEEecCC----cee
Q 021399          163 SAGEDAIVRIWDTETGK--LLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTER----PVN  236 (313)
Q Consensus       163 t~~~d~~i~lwd~~~~~--~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~----~~~  236 (313)
                      +++.|+.|++||+.++.  ++..+....... .++.+.|+|++.++++++.|+.+++||++.+.+..++....    ++.
T Consensus       305 s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~-~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~~~~~~~~~~~~~~~~  383 (456)
T KOG0266|consen  305 SASYDGTIRVWDLETGSKLCLKLLSGAENSA-PVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKSVGTYTGHSNLVRCIF  383 (456)
T ss_pred             EcCCCccEEEEECCCCceeeeecccCCCCCC-ceeEEEECCCCcEEEEecCCCeEEEEEccCCcceeeecccCCcceeEe
Confidence            99999999999999988  444444332223 69999999999999999999999999999999888875322    233


Q ss_pred             EEEeccCCCEEEEcccccCceeEeeccCCCceeeeeeehhhhhhhcccccc-ccceeEEEECCCCCeeEEEE
Q 021399          237 AVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGH-FGPINALAFNPDGKRYGFLL  307 (313)
Q Consensus       237 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h-~~~V~~~~fspdgk~~~~~~  307 (313)
                      ...+++.+..++.+ +.|.             .+.+||..++..+..+.+| ..+|..++++|...++++..
T Consensus       384 ~~~~~~~~~~i~sg-~~d~-------------~v~~~~~~s~~~~~~l~~h~~~~~~~~~~~~~~~~~~s~s  441 (456)
T KOG0266|consen  384 SPTLSTGGKLIYSG-SEDG-------------SVYVWDSSSGGILQRLEGHSKAAVSDLSSHPTENLIASSS  441 (456)
T ss_pred             cccccCCCCeEEEE-eCCc-------------eEEEEeCCccchhhhhcCCCCCceeccccCCCcCeeeecC
Confidence            34445555554443 3222             3567888878888889999 99999999999999998875

>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]

Probab=100.00  E-value=1.5e-32  Score=215.62  Aligned_cols=278  Identities=23%  Similarity=0.404  Sum_probs=205.7

Q ss_pred             CCcc-cccccccceeEEEEccCCCEEEEeeCCCCeEEEeC-CCCcEEEEecCCCCceEEEEECCCCCeEEEeeCCCcEEE
Q 021399            1 MRPI-LMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFA-DNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKL   78 (313)
Q Consensus         1 ~~~~-~l~~h~~~v~~~~fs~~g~~l~s~s~d~~i~iw~~-~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~v~v   78 (313)
                      |+|+ .+.||++.|+.+.|+|+|..|+||+.|..|.+|++ .+-+-..++++|.++|..+.|.+|++.++|+|.|.+++.
T Consensus        37 ~ap~m~l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~  116 (338)
T KOG0265|consen   37 QAPIMLLPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDCENFWVLKGHSGAVMELHGMRDGSHILSCGTDKTVRG  116 (338)
T ss_pred             cchhhhcCCCcceEEEEEECCCCCeEeecCCcceEEEEeccccccceeeeccccceeEeeeeccCCCEEEEecCCceEEE
Confidence            3555 67889999999999999999999999999999984 445567889999999999999999999999999999999


Q ss_pred             EECCCCeEEEEecCCC-CeeEEEeec-CCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEcc
Q 021399           79 WNVETGAQLFTFNFDS-PARSVDFAV-GDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGP  156 (313)
Q Consensus        79 Wd~~~~~~~~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~  156 (313)
                      ||.++++++....... -...+.... +..++....+     +...+++++....      .+..+ ..+-+++.+.|..
T Consensus       117 wD~~tG~~~rk~k~h~~~vNs~~p~rrg~~lv~Sgsd-----D~t~kl~D~R~k~------~~~t~-~~kyqltAv~f~d  184 (338)
T KOG0265|consen  117 WDAETGKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSD-----DGTLKLWDIRKKE------AIKTF-ENKYQLTAVGFKD  184 (338)
T ss_pred             EecccceeeehhccccceeeecCccccCCeEEEecCC-----CceEEEEeecccc------hhhcc-ccceeEEEEEecc
Confidence            9999999887665332 233333222 2233222222     2233444432111      11111 1133578889999


Q ss_pred             CCCEEEEeeCCCeEEEEECCCCceeeecccccCceeceEEEEECCCCCEEEEeeCCCcEEEEECCCC----cEEEEEec-
Q 021399          157 LNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTL----ELIKTYVT-  231 (313)
Q Consensus       157 ~~~~i~t~~~d~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~dg~i~iwd~~~~----~~~~~~~~-  231 (313)
                      ++..+.+|+-|+.|++||++....+-..   .||.+.|+.++.+++|.++.+-+.|.++++||++..    .|+..+.. 
T Consensus       185 ~s~qv~sggIdn~ikvWd~r~~d~~~~l---sGh~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~  261 (338)
T KOG0265|consen  185 TSDQVISGGIDNDIKVWDLRKNDGLYTL---SGHADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGH  261 (338)
T ss_pred             cccceeeccccCceeeeccccCcceEEe---ecccCceeeEEeccCCCccccccccceEEEEEecccCCCCceEEEeecc
Confidence            9999999999999999999877665443   489999999999999999999999999999999864    44555542 


Q ss_pred             ----CCceeEEEeccCCCEEEEcccccCceeEeeccCCCceeeeeeehhhhhhhccccccccceeEEEECCCCCeeEEEE
Q 021399          232 ----ERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKRYGFLL  307 (313)
Q Consensus       232 ----~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~fspdgk~~~~~~  307 (313)
                          +...-.++|+|.+..+-+  |+-+..+++||            ..+...+-++.||.+-|++++|+|..-+++.+-
T Consensus       262 ~hnfeknlL~cswsp~~~~i~a--gs~dr~vyvwd------------~~~r~~lyklpGh~gsvn~~~Fhp~e~iils~~  327 (338)
T KOG0265|consen  262 IHNFEKNLLKCSWSPNGTKITA--GSADRFVYVWD------------TTSRRILYKLPGHYGSVNEVDFHPTEPIILSCS  327 (338)
T ss_pred             hhhhhhhcceeeccCCCCcccc--ccccceEEEee------------cccccEEEEcCCcceeEEEeeecCCCcEEEEec
Confidence                223557899998875433  33344555555            444444556789999999999999998887663

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=100.00  E-value=7.9e-32  Score=225.04  Aligned_cols=275  Identities=31%  Similarity=0.489  Sum_probs=220.0

Q ss_pred             ccccccccceeEEEEccCCCEEEEeeCCCCeEEEeCCCCcEEEEecCCCCceEEEEECCCCCeEEEeeCCCcEEEEECCC
Q 021399            4 ILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVET   83 (313)
Q Consensus         4 ~~l~~h~~~v~~~~fs~~g~~l~s~s~d~~i~iw~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~v~vWd~~~   83 (313)
                      ..+++|.++|.+++|+|++++|++++.|+.+++|+..+++....+.+|...+..+.|+|+++.+++++.|+.+++||+.+
T Consensus         3 ~~~~~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~~   82 (289)
T cd00200           3 RTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLET   82 (289)
T ss_pred             hHhcccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCcEEEEecCCcceeEEEECCCCCEEEEEcCCCeEEEEEcCc
Confidence            46789999999999999999999999999999999999988889999999999999999999999999999999999998


Q ss_pred             CeEEEEecC-CCCeeEEEeecCCeEEEEEC-CCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEccCCCEE
Q 021399           84 GAQLFTFNF-DSPARSVDFAVGDKLAVITT-DPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTI  161 (313)
Q Consensus        84 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i  161 (313)
                      ++....+.. ...+..+.+.+...+++... +..      +..+++.      .......+..|...+..+.|+|++.++
T Consensus        83 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~------i~~~~~~------~~~~~~~~~~~~~~i~~~~~~~~~~~l  150 (289)
T cd00200          83 GECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKT------IKVWDVE------TGKCLTTLRGHTDWVNSVAFSPDGTFV  150 (289)
T ss_pred             ccceEEEeccCCcEEEEEEcCCCCEEEEecCCCe------EEEEECC------CcEEEEEeccCCCcEEEEEEcCcCCEE
Confidence            766555543 44677888888766665554 322      2223221      234455566788899999999998888


Q ss_pred             EEeeCCCeEEEEECCCCceeeecccccCceeceEEEEECCCCCEEEEeeCCCcEEEEECCCCcEEEEE-ecCCceeEEEe
Q 021399          162 ISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTY-VTERPVNAVTM  240 (313)
Q Consensus       162 ~t~~~d~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~-~~~~~~~~~~~  240 (313)
                      ++++.|+.|++||+.+++.+..+.   .|...+.+++|+|+++.+++++.|+.+++||+++++.+..+ .+...+.+++|
T Consensus       151 ~~~~~~~~i~i~d~~~~~~~~~~~---~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~  227 (289)
T cd00200         151 ASSSQDGTIKLWDLRTGKCVATLT---GHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAF  227 (289)
T ss_pred             EEEcCCCcEEEEEccccccceeEe---cCccccceEEECCCcCEEEEecCCCcEEEEECCCCceecchhhcCCceEEEEE
Confidence            888889999999998777665543   57778999999999999999999999999999998888887 45668999999


Q ss_pred             ccCCCEEEEcccccCceeEeeccCCCceeeeeeehhhhhhhccccccccceeEEEECCCCCeeEEEE
Q 021399          241 SPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKRYGFLL  307 (313)
Q Consensus       241 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~fspdgk~~~~~~  307 (313)
                      +|++..+ ++++.+ +            .+++|+..+++.+..+.+|...|.+++|+|+++.++...
T Consensus       228 ~~~~~~~-~~~~~~-~------------~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~  280 (289)
T cd00200         228 SPDGYLL-ASGSED-G------------TIRVWDLRTGECVQTLSGHTNSVTSLAWSPDGKRLASGS  280 (289)
T ss_pred             cCCCcEE-EEEcCC-C------------cEEEEEcCCceeEEEccccCCcEEEEEECCCCCEEEEec
Confidence            9985544 443322 2            234556555555566678999999999999998877654

>KOG0295 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=3.2e-34  Score=230.19  Aligned_cols=247  Identities=23%  Similarity=0.353  Sum_probs=210.8

Q ss_pred             cccccccceeEEEEccCCCEEEEeeCCCCeEEEeCCCCcEEEEecCCCCceEEEEECCCCCeEEEeeCCCcEEEEECCCC
Q 021399            5 LMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETG   84 (313)
Q Consensus         5 ~l~~h~~~v~~~~fs~~g~~l~s~s~d~~i~iw~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~v~vWd~~~~   84 (313)
                      -+.||..+|+.+-|+|+-...++++.|.+|++||..+++....++||.++|..++|+..|++++|++.|-.+++||..+.
T Consensus       103 ~l~g~r~~vt~v~~hp~~~~v~~as~d~tikv~D~~tg~~e~~LrGHt~sv~di~~~a~Gk~l~tcSsDl~~~LWd~~~~  182 (406)
T KOG0295|consen  103 KLAGHRSSVTRVIFHPSEALVVSASEDATIKVFDTETGELERSLRGHTDSVFDISFDASGKYLATCSSDLSAKLWDFDTF  182 (406)
T ss_pred             hhhccccceeeeeeccCceEEEEecCCceEEEEEccchhhhhhhhccccceeEEEEecCccEEEecCCccchhheeHHHH
Confidence            57889999999999999999999999999999999999999999999999999999999999999999999999997642


Q ss_pred             eEEEEecCCCCeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEccCCCEEEEe
Q 021399           85 AQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISA  164 (313)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~t~  164 (313)
                      ..                                                   .+..+.+|...|.++.|-|.+.+|+++
T Consensus       183 ~~---------------------------------------------------c~ks~~gh~h~vS~V~f~P~gd~ilS~  211 (406)
T KOG0295|consen  183 FR---------------------------------------------------CIKSLIGHEHGVSSVFFLPLGDHILSC  211 (406)
T ss_pred             HH---------------------------------------------------HHHHhcCcccceeeEEEEecCCeeeec
Confidence            10                                                   011223566678888899999999999


Q ss_pred             eCCCeEEEEECCCCceeeecccccCceeceEEEEECCCCCEEEEeeCCCcEEEEECCCCcEEEEEe-cCCceeEEEeccC
Q 021399          165 GEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYV-TERPVNAVTMSPL  243 (313)
Q Consensus       165 ~~d~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~-~~~~~~~~~~~p~  243 (313)
                      +.|.+|+.||+.++-++.++.   +|+..|..++...||..+++++.|.++++|-+.+.+|...+. ++.++.+++|-|.
T Consensus       212 srD~tik~We~~tg~cv~t~~---~h~ewvr~v~v~~DGti~As~s~dqtl~vW~~~t~~~k~~lR~hEh~vEci~wap~  288 (406)
T KOG0295|consen  212 SRDNTIKAWECDTGYCVKTFP---GHSEWVRMVRVNQDGTIIASCSNDQTLRVWVVATKQCKAELREHEHPVECIAWAPE  288 (406)
T ss_pred             ccccceeEEecccceeEEecc---CchHhEEEEEecCCeeEEEecCCCceEEEEEeccchhhhhhhccccceEEEEeccc
Confidence            999999999999999887764   799999999999999999999999999999999998877765 5778999999886


Q ss_pred             CCEE---EEcccccCceeEeeccCCCceeeeeeehhhhhhhccccccccceeEEEECCCCCeeEEEE
Q 021399          244 LDHV---VLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKRYGFLL  307 (313)
Q Consensus       244 ~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~fspdgk~~~~~~  307 (313)
                      ..+-   -+++..++..+.....|++  .+++||..++.++-.+.||.++|..++|+|.||++..|+
T Consensus       289 ~~~~~i~~at~~~~~~~~l~s~SrDk--tIk~wdv~tg~cL~tL~ghdnwVr~~af~p~Gkyi~Sca  353 (406)
T KOG0295|consen  289 SSYPSISEATGSTNGGQVLGSGSRDK--TIKIWDVSTGMCLFTLVGHDNWVRGVAFSPGGKYILSCA  353 (406)
T ss_pred             ccCcchhhccCCCCCccEEEeecccc--eEEEEeccCCeEEEEEecccceeeeeEEcCCCeEEEEEe
Confidence            4322   2223333444555555554  478999999999999999999999999999999998876

>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]

Probab=100.00  E-value=5.8e-34  Score=218.37  Aligned_cols=275  Identities=31%  Similarity=0.606  Sum_probs=228.8

Q ss_pred             CcccccccccceeEEEEc---cCCCEEEEeeCCCCeEEEeCCCCcEEEEecCCCCceEEEEECCCCCeEEEeeCCCcEEE
Q 021399            2 RPILMKGHERPLTYLKYN---KDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKL   78 (313)
Q Consensus         2 ~~~~l~~h~~~v~~~~fs---~~g~~l~s~s~d~~i~iw~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~v~v   78 (313)
                      .|++-.||+.+|..+.||   |+|=+|+|++.|+.--+-+.++|.-+.+|.||.++||+..++.+-...+|++.|=+.|+
T Consensus         6 ~pl~c~ghtrpvvdl~~s~itp~g~flisa~kd~~pmlr~g~tgdwigtfeghkgavw~~~l~~na~~aasaaadftakv   85 (334)
T KOG0278|consen    6 TPLTCHGHTRPVVDLAFSPITPDGYFLISASKDGKPMLRNGDTGDWIGTFEGHKGAVWSATLNKNATRAASAAADFTAKV   85 (334)
T ss_pred             CceEEcCCCcceeEEeccCCCCCceEEEEeccCCCchhccCCCCCcEEeeeccCcceeeeecCchhhhhhhhcccchhhh
Confidence            488889999999999998   47889999999999999999999999999999999999999988888999999999999


Q ss_pred             EECCCCeEEEEecCCCCeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEccCC
Q 021399           79 WNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLN  158 (313)
Q Consensus        79 Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~  158 (313)
                      ||.-++..+..+.+..-+..+.|..+...++.....     ...++.++.+     ...+.+.+.+|.+.|..+.|....
T Consensus        86 w~a~tgdelhsf~hkhivk~~af~~ds~~lltgg~e-----kllrvfdln~-----p~App~E~~ghtg~Ir~v~wc~eD  155 (334)
T KOG0278|consen   86 WDAVTGDELHSFEHKHIVKAVAFSQDSNYLLTGGQE-----KLLRVFDLNR-----PKAPPKEISGHTGGIRTVLWCHED  155 (334)
T ss_pred             hhhhhhhhhhhhhhhheeeeEEecccchhhhccchH-----HHhhhhhccC-----CCCCchhhcCCCCcceeEEEeccC
Confidence            999999988888888888999998876655443221     1112222211     122445677899999999999999


Q ss_pred             CEEEEeeCCCeEEEEECCCCceeeecccccCceeceEEEEECCCCCEEEEeeCCCcEEEEECCCCcEEEEEecCCceeEE
Q 021399          159 RTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTERPVNAV  238 (313)
Q Consensus       159 ~~i~t~~~d~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~  238 (313)
                      +.|++..+|++||+||.++++.++.+.    .+..|+++..+++|.+| +-..-+.|++||.++..+++.+..+..|.+.
T Consensus       156 ~~iLSSadd~tVRLWD~rTgt~v~sL~----~~s~VtSlEvs~dG~il-Tia~gssV~Fwdaksf~~lKs~k~P~nV~SA  230 (334)
T KOG0278|consen  156 KCILSSADDKTVRLWDHRTGTEVQSLE----FNSPVTSLEVSQDGRIL-TIAYGSSVKFWDAKSFGLLKSYKMPCNVESA  230 (334)
T ss_pred             ceEEeeccCCceEEEEeccCcEEEEEe----cCCCCcceeeccCCCEE-EEecCceeEEeccccccceeeccCccccccc
Confidence            999999999999999999999888765    35679999999999855 4455678999999999999999888899999


Q ss_pred             EeccCCCEEEEcccccCceeEeeccCCCceeeeeeehhhhhhhccc-cccccceeEEEECCCCCeeEE
Q 021399          239 TMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGV-KGHFGPINALAFNPDGKRYGF  305 (313)
Q Consensus       239 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~h~~~V~~~~fspdgk~~~~  305 (313)
                      +.+|.. .++++|+.|..             ...||..++..++.+ ++|-+||-|+.|+|||..+|.
T Consensus       231 SL~P~k-~~fVaGged~~-------------~~kfDy~TgeEi~~~nkgh~gpVhcVrFSPdGE~yAs  284 (334)
T KOG0278|consen  231 SLHPKK-EFFVAGGEDFK-------------VYKFDYNTGEEIGSYNKGHFGPVHCVRFSPDGELYAS  284 (334)
T ss_pred             cccCCC-ceEEecCcceE-------------EEEEeccCCceeeecccCCCCceEEEEECCCCceeec
Confidence            999998 56777776643             345777788888875 899999999999999998774

>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]

Probab=100.00  E-value=3.3e-32  Score=218.72  Aligned_cols=276  Identities=16%  Similarity=0.276  Sum_probs=217.1

Q ss_pred             cccccccccceeEEEEccCCCEEEEeeCCCCeEEEeCCCCcEEEEecCCCCceEEEEECCCCCeEEEeeCCCcEEEEECC
Q 021399            3 PILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVE   82 (313)
Q Consensus         3 ~~~l~~h~~~v~~~~fs~~g~~l~s~s~d~~i~iw~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~v~vWd~~   82 (313)
                      -+++..|+++|++++.+|+.++++||+.|....||+..++....++.+|..+|+++.|+.+|.+|+||+.+|.|+||+..
T Consensus        57 ~~tF~~H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~ge~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~s  136 (399)
T KOG0296|consen   57 LVTFDKHTDSVFAVSLHPNNNLVATGGGDDLAFLWDISTGEFAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKVS  136 (399)
T ss_pred             eeehhhcCCceEEEEeCCCCceEEecCCCceEEEEEccCCcceeEecCCCCceEEEEEccCceEEEecCCCccEEEEEcc
Confidence            45789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCeEEEEecC-CCCeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEccCCCEE
Q 021399           83 TGAQLFTFNF-DSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTI  161 (313)
Q Consensus        83 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i  161 (313)
                      ++...+.+.. -..+--+.|+|...++++....     +.+=.|.+      .+......+.||+.++++=.|.|+|+++
T Consensus       137 tg~~~~~~~~e~~dieWl~WHp~a~illAG~~D-----GsvWmw~i------p~~~~~kv~~Gh~~~ct~G~f~pdGKr~  205 (399)
T KOG0296|consen  137 TGGEQWKLDQEVEDIEWLKWHPRAHILLAGSTD-----GSVWMWQI------PSQALCKVMSGHNSPCTCGEFIPDGKRI  205 (399)
T ss_pred             cCceEEEeecccCceEEEEecccccEEEeecCC-----CcEEEEEC------CCcceeeEecCCCCCcccccccCCCceE
Confidence            9988777652 3455666788866555544321     11111222      1224567788999999999999999999


Q ss_pred             EEeeCCCeEEEEECCCCceeeecccccC------------------------------------------------ceec
Q 021399          162 ISAGEDAIVRIWDTETGKLLKESDKETG------------------------------------------------HKKT  193 (313)
Q Consensus       162 ~t~~~d~~i~lwd~~~~~~~~~~~~~~~------------------------------------------------h~~~  193 (313)
                      +++..||+|++|+++++.++.++....+                                                +...
T Consensus       206 ~tgy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~  285 (399)
T KOG0296|consen  206 LTGYDDGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEEL  285 (399)
T ss_pred             EEEecCceEEEEecCCCceeEEecccccCcCCccccccccceeEeccCCccEEEEccccceEEEecCCCCccccccchhh
Confidence            9999999999999999988766542110                                                0011


Q ss_pred             ---eEEEEECCCCCEEEEeeCCCcEEEEECCCCcEEEEEecCCceeEEEeccCCCEEEEcccccCceeEeeccCCCceee
Q 021399          194 ---ITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEA  270 (313)
Q Consensus       194 ---v~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~  270 (313)
                         |-++.++..=...|+|+.||+|.|||+.+..+.....++..|..+-|-+ .+++++++.+.              .+
T Consensus       286 ~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~R~~c~he~~V~~l~w~~-t~~l~t~c~~g--------------~v  350 (399)
T KOG0296|consen  286 DESVESIPSSSKLPLAACGSVDGTIAIYDLAASTLRHICEHEDGVTKLKWLN-TDYLLTACANG--------------KV  350 (399)
T ss_pred             hhhhhhcccccccchhhcccccceEEEEecccchhheeccCCCceEEEEEcC-cchheeeccCc--------------eE
Confidence               1112233344468899999999999999988877777888899999988 66777665432              34


Q ss_pred             eeeehhhhhhhccccccccceeEEEECCCCCeeE
Q 021399          271 KFFDKILQEEIGGVKGHFGPINALAFNPDGKRYG  304 (313)
Q Consensus       271 ~~~~~~~~~~~~~~~~h~~~V~~~~fspdgk~~~  304 (313)
                      +.||..+++.+..+.||..+|.+++++||.+.+.
T Consensus       351 ~~wDaRtG~l~~~y~GH~~~Il~f~ls~~~~~vv  384 (399)
T KOG0296|consen  351 RQWDARTGQLKFTYTGHQMGILDFALSPQKRLVV  384 (399)
T ss_pred             EeeeccccceEEEEecCchheeEEEEcCCCcEEE
Confidence            6677777777788899999999999999988753

>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]

Probab=100.00  E-value=3.5e-32  Score=208.43  Aligned_cols=228  Identities=21%  Similarity=0.353  Sum_probs=186.3

Q ss_pred             cccccccceeEEEEccCCCEEEEeeCCCCeEEEeCCCCcEEEEecCCCCceEEEEECCCCCeEEEeeCCCcEEEEECCCC
Q 021399            5 LMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETG   84 (313)
Q Consensus         5 ~l~~h~~~v~~~~fs~~g~~l~s~s~d~~i~iw~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~v~vWd~~~~   84 (313)
                      ++.+|++.|..+.|..+|+.++|||.||++||||+......+.+ .|..+|+++..+|+...|++|.++|.|++||+.+.
T Consensus        78 t~e~h~kNVtaVgF~~dgrWMyTgseDgt~kIWdlR~~~~qR~~-~~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~  156 (311)
T KOG0315|consen   78 TFEGHTKNVTAVGFQCDGRWMYTGSEDGTVKIWDLRSLSCQRNY-QHNSPVNTVVLHPNQTELISGDQSGNIRVWDLGEN  156 (311)
T ss_pred             EEeccCCceEEEEEeecCeEEEecCCCceEEEEeccCcccchhc-cCCCCcceEEecCCcceEEeecCCCcEEEEEccCC
Confidence            78899999999999999999999999999999999886555444 46799999999999889999999999999999887


Q ss_pred             eEEEEec--CCCCeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEccCCCEEE
Q 021399           85 AQLFTFN--FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTII  162 (313)
Q Consensus        85 ~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~  162 (313)
                      .+...+.  ...++.++.+.+++..+++.+++     +...+|++..+.....-+++..++.|++.+..+.++|++++|+
T Consensus       157 ~c~~~liPe~~~~i~sl~v~~dgsml~a~nnk-----G~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~la  231 (311)
T KOG0315|consen  157 SCTHELIPEDDTSIQSLTVMPDGSMLAAANNK-----GNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVKYLA  231 (311)
T ss_pred             ccccccCCCCCcceeeEEEcCCCcEEEEecCC-----ccEEEEEccCCCccccceEhhheecccceEEEEEECCCCcEEE
Confidence            6554443  34577888888888777766542     2344555554444444567777899999999999999999999


Q ss_pred             EeeCCCeEEEEECCCCceeeecccccCceeceEEEEECCCCCEEEEeeCCCcEEEEECCCCcEEEEEec-CCceeEEEe
Q 021399          163 SAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVT-ERPVNAVTM  240 (313)
Q Consensus       163 t~~~d~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~-~~~~~~~~~  240 (313)
                      +++.|.+++||+.+..  ++......+|+..+...+||.||.+|++|+.|+++++||++.++.++.+.. .....|+++
T Consensus       232 t~ssdktv~iwn~~~~--~kle~~l~gh~rWvWdc~FS~dg~YlvTassd~~~rlW~~~~~k~v~qy~gh~K~~vc~~l  308 (311)
T KOG0315|consen  232 TCSSDKTVKIWNTDDF--FKLELVLTGHQRWVWDCAFSADGEYLVTASSDHTARLWDLSAGKEVRQYQGHHKAAVCVAL  308 (311)
T ss_pred             eecCCceEEEEecCCc--eeeEEEeecCCceEEeeeeccCccEEEecCCCCceeecccccCceeeecCCcccccEEEEe
Confidence            9999999999999876  222223458999999999999999999999999999999999999988864 334445544

>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=2.5e-31  Score=231.30  Aligned_cols=286  Identities=25%  Similarity=0.422  Sum_probs=224.4

Q ss_pred             ccccccccceeEEEEccCCCEEEEeeCCCCeEEEeCCCCcE--EEEecCCCCceEEEEECCCCCeEEEeeCCCcEEEEEC
Q 021399            4 ILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGER--LGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNV   81 (313)
Q Consensus         4 ~~l~~h~~~v~~~~fs~~g~~l~s~s~d~~i~iw~~~~~~~--~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~v~vWd~   81 (313)
                      ++..||.+.|.++.|+.|.++|++||.|..+|||.++.-+-  ...+.+|+++|-++-|..+...++|-+.||.+.+|-.
T Consensus       139 r~~~g~fddi~si~Ws~DSr~l~~gsrD~s~rl~~v~~~k~~~~~~l~gHkd~VvacfF~~~~~~l~tvskdG~l~~W~~  218 (893)
T KOG0291|consen  139 RTYLGHFDDITSIDWSDDSRLLVTGSRDLSARLFGVDGNKNLFTYALNGHKDYVVACFFGANSLDLYTVSKDGALFVWTC  218 (893)
T ss_pred             eeecCCccceeEEEeccCCceEEeccccceEEEEEeccccccceEeccCCCcceEEEEeccCcceEEEEecCceEEEEEe
Confidence            46789999999999999999999999999999998886654  6778999999999999999999999999999999976


Q ss_pred             CC-----------------------CeE-----EEEe------cC-CCCeeEEEeecCCeEEEEECC-Cceec---cc--
Q 021399           82 ET-----------------------GAQ-----LFTF------NF-DSPARSVDFAVGDKLAVITTD-PFMEL---NS--  120 (313)
Q Consensus        82 ~~-----------------------~~~-----~~~~------~~-~~~~~~~~~~~~~~~~~~~~~-~~~~~---~~--  120 (313)
                      ..                       ++.     .+..      +. ...+....|+++..++++... +.+.+   ..  
T Consensus       219 ~~~P~~~~~~~kd~eg~~d~~~~~~~Eek~~~~~~~k~~k~~ln~~~~kvtaa~fH~~t~~lvvgFssG~f~LyelP~f~  298 (893)
T KOG0291|consen  219 DLRPPELDKAEKDEEGSDDEEMDEDGEEKTHKIFWYKTKKHYLNQNSSKVTAAAFHKGTNLLVVGFSSGEFGLYELPDFN  298 (893)
T ss_pred             cCCCcccccccccccccccccccccchhhhcceEEEEEEeeeecccccceeeeeccCCceEEEEEecCCeeEEEecCCce
Confidence            51                       111     1110      11 245666677777766665433 21111   00  


Q ss_pred             cceeeeeeeCCC-----C---------------------CCCceEEEecCCCCceEEEEEccCCCEEEEeeCCCeEEEEE
Q 021399          121 AIHVKRIARDPA-----D---------------------QGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWD  174 (313)
Q Consensus       121 ~~~~~~~~~~~~-----~---------------------~~~~~~~~~~~~~~~i~~~~~~~~~~~i~t~~~d~~i~lwd  174 (313)
                      .++...+...+.     .                     .+...++..++|...+++++++|+|.+++||++||+|+|||
T Consensus       299 lih~LSis~~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsEsYVlKQQgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn  378 (893)
T KOG0291|consen  299 LIHSLSISDQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSESYVLKQQGHSDRITSLAYSPDGQLIATGAEDGKVKVWN  378 (893)
T ss_pred             EEEEeecccceeeEEEecccCCEEEEcCCccceEEEEEeeccceeeeccccccceeeEEECCCCcEEEeccCCCcEEEEe
Confidence            011111110000     0                     11234556679999999999999999999999999999999


Q ss_pred             CCCCceeeecccccCceeceEEEEECCCCCEEEEeeCCCcEEEEECCCCcEEEEEecCCc--eeEEEeccCCCEEEEccc
Q 021399          175 TETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTERP--VNAVTMSPLLDHVVLGGG  252 (313)
Q Consensus       175 ~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~--~~~~~~~p~~~~~~~~~~  252 (313)
                      ..++-|+-++.   .|...|+++.|+..|+.++|.|.||+||.||+....+.+++..+.+  -.|++..|.|..+++++ 
T Consensus       379 ~~SgfC~vTFt---eHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrNfRTft~P~p~QfscvavD~sGelV~AG~-  454 (893)
T KOG0291|consen  379 TQSGFCFVTFT---EHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYRNFRTFTSPEPIQFSCVAVDPSGELVCAGA-  454 (893)
T ss_pred             ccCceEEEEec---cCCCceEEEEEEecCCEEEEeecCCeEEeeeecccceeeeecCCCceeeeEEEEcCCCCEEEeec-
Confidence            99998887775   5999999999999999999999999999999999999999987655  56788888888666543 


Q ss_pred             ccCceeEeeccCCCceeeeeeehhhhhhhccccccccceeEEEECCCCCeeEE
Q 021399          253 QDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKRYGF  305 (313)
Q Consensus       253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~fspdgk~~~~  305 (313)
                      .|            .|+|.+|+.++++.+-.++||.+||.+++|+|+|..+|.
T Consensus       455 ~d------------~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~~~~~LaS  495 (893)
T KOG0291|consen  455 QD------------SFEIFVWSVQTGQLLDILSGHEGPVSGLSFSPDGSLLAS  495 (893)
T ss_pred             cc------------eEEEEEEEeecCeeeehhcCCCCcceeeEEccccCeEEe
Confidence            22            578899999999999999999999999999999998765

>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]

Probab=100.00  E-value=2.1e-31  Score=236.42  Aligned_cols=231  Identities=26%  Similarity=0.460  Sum_probs=191.9

Q ss_pred             ccccc-ccceeEEEEccCCCEEEEeeCCCCeEEEeCCCCc--EEEEecCCCCceEEEEECCCCCeEEEeeCCCcEEEEEC
Q 021399            5 LMKGH-ERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGE--RLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNV   81 (313)
Q Consensus         5 ~l~~h-~~~v~~~~fs~~g~~l~s~s~d~~i~iw~~~~~~--~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~v~vWd~   81 (313)
                      ++.+| ...|.|+.|+++|+.|++++.|+.+++|+..+.+  ...++.+|...|..++|+|+++++++++.|++++|||+
T Consensus       153 ~~~~~~~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~  232 (456)
T KOG0266|consen  153 TLAGHECPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKSNLLRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDL  232 (456)
T ss_pred             eecccccCceEEEEEcCCCCeEEEccCCCcEEEeecccccchhhccccccccceeeeEECCCCcEEEEecCCceEEEeec
Confidence            34444 7789999999999999999999999999998777  77788999999999999999999999999999999998


Q ss_pred             CCCeEEEEecCCCCeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEccCCCEE
Q 021399           82 ETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTI  161 (313)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i  161 (313)
                      ...                                                   +..+..+.+|...|++++|+|.++.+
T Consensus       233 ~~~---------------------------------------------------~~~~~~l~gH~~~v~~~~f~p~g~~i  261 (456)
T KOG0266|consen  233 KDD---------------------------------------------------GRNLKTLKGHSTYVTSVAFSPDGNLL  261 (456)
T ss_pred             cCC---------------------------------------------------CeEEEEecCCCCceEEEEecCCCCEE
Confidence            432                                                   12345567899999999999999999


Q ss_pred             EEeeCCCeEEEEECCCCceeeecccccCceeceEEEEECCCCCEEEEeeCCCcEEEEECCCCc--EEEEEec-CC--cee
Q 021399          162 ISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLE--LIKTYVT-ER--PVN  236 (313)
Q Consensus       162 ~t~~~d~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~--~~~~~~~-~~--~~~  236 (313)
                      ++|+.|++|+|||++++++++.+.   +|.+.|++++|+++++.|++++.|+.|++||+.++.  +..++.. +.  ++.
T Consensus       262 ~Sgs~D~tvriWd~~~~~~~~~l~---~hs~~is~~~f~~d~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~  338 (456)
T KOG0266|consen  262 VSGSDDGTVRIWDVRTGECVRKLK---GHSDGISGLAFSPDGNLLVSASYDGTIRVWDLETGSKLCLKLLSGAENSAPVT  338 (456)
T ss_pred             EEecCCCcEEEEeccCCeEEEeee---ccCCceEEEEECCCCCEEEEcCCCccEEEEECCCCceeeeecccCCCCCCcee
Confidence            999999999999999988877664   799999999999999999999999999999999999  5566542 22  589


Q ss_pred             EEEeccCCCEEEEcccccCceeEeeccCCCceeeeeeehhhhhhhccccccccc---eeEEEECCCCCee
Q 021399          237 AVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGP---INALAFNPDGKRY  303 (313)
Q Consensus       237 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~---V~~~~fspdgk~~  303 (313)
                      .+.|+|++.+++++..+  .            .+++||...++......+|...   +.+..++++|+.+
T Consensus       339 ~~~fsp~~~~ll~~~~d--~------------~~~~w~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  394 (456)
T KOG0266|consen  339 SVQFSPNGKYLLSASLD--R------------TLKLWDLRSGKSVGTYTGHSNLVRCIFSPTLSTGGKLI  394 (456)
T ss_pred             EEEECCCCcEEEEecCC--C------------eEEEEEccCCcceeeecccCCcceeEecccccCCCCeE
Confidence            99999999998876532  2            2456776666666666777664   4445556677763

>KOG0282 consensus mRNA splicing factor [Function unknown]

Probab=100.00  E-value=2.7e-32  Score=226.48  Aligned_cols=270  Identities=22%  Similarity=0.332  Sum_probs=218.2

Q ss_pred             ccccccccceeEEEEcc-CCCEEEEeeCCCCeEEEeCCC-CcEEEEecCCCCceEEEEECCCCCeEEEeeCCCcEEEEEC
Q 021399            4 ILMKGHERPLTYLKYNK-DGDLLFSCAKDHTPTVWFADN-GERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNV   81 (313)
Q Consensus         4 ~~l~~h~~~v~~~~fs~-~g~~l~s~s~d~~i~iw~~~~-~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~v~vWd~   81 (313)
                      .++.||++.|.++.|.| .+.+|+|++.|+.|+||++-+ ++++.+|.+|..+|..++|+++|..|+|+|-|+++|+||+
T Consensus       208 ~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~lKlwDt  287 (503)
T KOG0282|consen  208 HNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNNCGTSFLSASFDRFLKLWDT  287 (503)
T ss_pred             eeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcceehhhhcchhhhhhhhccccCCeeeeeecceeeeeecc
Confidence            47899999999999999 899999999999999999876 7899999999999999999999999999999999999999


Q ss_pred             CCCeEEEEecCCCCeeEEEeecCC--eEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEccCCC
Q 021399           82 ETGAQLFTFNFDSPARSVDFAVGD--KLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNR  159 (313)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~  159 (313)
                      ++|+++..+..+....++.|.|++  .++++..++      .+..|++      .+++.+.....|-+.|..+.|-+.++
T Consensus       288 ETG~~~~~f~~~~~~~cvkf~pd~~n~fl~G~sd~------ki~~wDi------Rs~kvvqeYd~hLg~i~~i~F~~~g~  355 (503)
T KOG0282|consen  288 ETGQVLSRFHLDKVPTCVKFHPDNQNIFLVGGSDK------KIRQWDI------RSGKVVQEYDRHLGAILDITFVDEGR  355 (503)
T ss_pred             ccceEEEEEecCCCceeeecCCCCCcEEEEecCCC------cEEEEec------cchHHHHHHHhhhhheeeeEEccCCc
Confidence            999999999999999999999976  333333332      2223332      23344444556778999999999999


Q ss_pred             EEEEeeCCCeEEEEECCCCceeeecccccCceeceEEEEECCCCCEEEEeeCCCcEEEEECCCCcEE---EEEe---cCC
Q 021399          160 TIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELI---KTYV---TER  233 (313)
Q Consensus       160 ~i~t~~~d~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~---~~~~---~~~  233 (313)
                      ++++.++|+.+++|+.....+++-+..  .+.....++..+|++++++.-+.|+.|.++.+...-..   +.+.   ..+
T Consensus       356 rFissSDdks~riWe~~~~v~ik~i~~--~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaG  433 (503)
T KOG0282|consen  356 RFISSSDDKSVRIWENRIPVPIKNIAD--PEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAG  433 (503)
T ss_pred             eEeeeccCccEEEEEcCCCccchhhcc--hhhccCcceecCCCCCeehhhccCceEEEEecccccccCHhhhhcceeccC
Confidence            999999999999999888777665433  23456788999999999999999999999986532111   1111   233


Q ss_pred             ceeEEEeccCCCEEEEcccccCceeEeeccCCCceeeeeeehhhhhhhccccccccceeEEEECCCCC
Q 021399          234 PVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGK  301 (313)
Q Consensus       234 ~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~fspdgk  301 (313)
                      ....+.|+|+|..++.+.++ +             ...+||..+.+.+..+++|.+++..+.|+|...
T Consensus       434 ys~~v~fSpDG~~l~SGdsd-G-------------~v~~wdwkt~kl~~~lkah~~~ci~v~wHP~e~  487 (503)
T KOG0282|consen  434 YSCQVDFSPDGRTLCSGDSD-G-------------KVNFWDWKTTKLVSKLKAHDQPCIGVDWHPVEP  487 (503)
T ss_pred             ceeeEEEcCCCCeEEeecCC-c-------------cEEEeechhhhhhhccccCCcceEEEEecCCCc
Confidence            45678899999987765432 2             345788888999999999999999999999843

>KOG0293 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=1.4e-31  Score=218.30  Aligned_cols=269  Identities=19%  Similarity=0.298  Sum_probs=206.0

Q ss_pred             ccccccccceeEEEEccCCCEEEEeeCCCCeEEEeCCCCc---EEEEecCCCCceEEEEECCCCCeEEEeeCCCcEEEEE
Q 021399            4 ILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGE---RLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWN   80 (313)
Q Consensus         4 ~~l~~h~~~v~~~~fs~~g~~l~s~s~d~~i~iw~~~~~~---~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~v~vWd   80 (313)
                      .+|..|++.|+.+.||++|++|||+|.|.+..||.+....   ..+++.+|..+|..+.||||.+++++|+.|..+++||
T Consensus       218 qil~~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~lwD  297 (519)
T KOG0293|consen  218 QILQDHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDRYLLACGFDEVLSLWD  297 (519)
T ss_pred             hhHhhCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCCCCeEEecCchHheeecc
Confidence            4788999999999999999999999999999999876554   4789999999999999999999999999999999999


Q ss_pred             CCCCeEEEEecCC--CCeeEEEeecCCeE-EEEECCCceeccccceeeeeeeCCCCCCCceEEEecCC-CCceEEEEEcc
Q 021399           81 VETGAQLFTFNFD--SPARSVDFAVGDKL-AVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGP-QGRINRAVWGP  156 (313)
Q Consensus        81 ~~~~~~~~~~~~~--~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~~~  156 (313)
                      +.++.....+...  ....++.|.|++.- ++++.+..+..      +++.       +......++- ...+.+++..+
T Consensus       298 v~tgd~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~------wdlD-------gn~~~~W~gvr~~~v~dlait~  364 (519)
T KOG0293|consen  298 VDTGDLRHLYPSGLGFSVSSCAWCPDGFRFVTGSPDRTIIM------WDLD-------GNILGNWEGVRDPKVHDLAITY  364 (519)
T ss_pred             CCcchhhhhcccCcCCCcceeEEccCCceeEecCCCCcEEE------ecCC-------cchhhcccccccceeEEEEEcC
Confidence            9999887666543  56778888887654 44444422211      1110       0111111221 24688999999


Q ss_pred             CCCEEEEeeCCCeEEEEECCCCceeeecccccCceeceEEEEECCCCCEEEEeeCCCcEEEEECCCCcEEEEEecCCcee
Q 021399          157 LNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTERPVN  236 (313)
Q Consensus       157 ~~~~i~t~~~d~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~  236 (313)
                      +|+++++.+.|..|++++.++......+    .....|+++..|.|++++++.-.+..+++||++....++.+......+
T Consensus       365 Dgk~vl~v~~d~~i~l~~~e~~~dr~li----se~~~its~~iS~d~k~~LvnL~~qei~LWDl~e~~lv~kY~Ghkq~~  440 (519)
T KOG0293|consen  365 DGKYVLLVTVDKKIRLYNREARVDRGLI----SEEQPITSFSISKDGKLALVNLQDQEIHLWDLEENKLVRKYFGHKQGH  440 (519)
T ss_pred             CCcEEEEEecccceeeechhhhhhhccc----cccCceeEEEEcCCCcEEEEEcccCeeEEeecchhhHHHHhhcccccc
Confidence            9999999999999999998875543222    245689999999999999999999999999999888888887655544


Q ss_pred             EEEeccCC---CEEEEcccccCceeEeeccCCCceeeeeeehhhhhhhccccccccceeEEEECCCCCe
Q 021399          237 AVTMSPLL---DHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKR  302 (313)
Q Consensus       237 ~~~~~p~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~fspdgk~  302 (313)
                      .+--+..|   +.++++|+.| ..            +++|+..+++.+.++.||...|++++|+|...+
T Consensus       441 fiIrSCFgg~~~~fiaSGSED-~k------------vyIWhr~sgkll~~LsGHs~~vNcVswNP~~p~  496 (519)
T KOG0293|consen  441 FIIRSCFGGGNDKFIASGSED-SK------------VYIWHRISGKLLAVLSGHSKTVNCVSWNPADPE  496 (519)
T ss_pred             eEEEeccCCCCcceEEecCCC-ce------------EEEEEccCCceeEeecCCcceeeEEecCCCCHH
Confidence            44444432   2444444444 33            456777778888999999999999999998654

>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]

Probab=100.00  E-value=4.5e-30  Score=196.86  Aligned_cols=268  Identities=17%  Similarity=0.241  Sum_probs=206.1

Q ss_pred             cccccccceeEEEEccCCCEEEEeeCCCCeEEEeCCCCc--EEEEecCCCCceEEEEECCCCCeEEEeeCCCcEEEEECC
Q 021399            5 LMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGE--RLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVE   82 (313)
Q Consensus         5 ~l~~h~~~v~~~~fs~~g~~l~s~s~d~~i~iw~~~~~~--~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~v~vWd~~   82 (313)
                      +.+.....|+.|...||++.|++++. -.||+||+.++.  ++.+|++|.+.|.++.|..+|+.++|||.||++||||++
T Consensus        35 Tiqh~dsqVNrLeiTpdk~~LAaa~~-qhvRlyD~~S~np~Pv~t~e~h~kNVtaVgF~~dgrWMyTgseDgt~kIWdlR  113 (311)
T KOG0315|consen   35 TIQHPDSQVNRLEITPDKKDLAAAGN-QHVRLYDLNSNNPNPVATFEGHTKNVTAVGFQCDGRWMYTGSEDGTVKIWDLR  113 (311)
T ss_pred             EEecCccceeeEEEcCCcchhhhccC-CeeEEEEccCCCCCceeEEeccCCceEEEEEeecCeEEEecCCCceEEEEecc
Confidence            34444556899999999999998775 678999999775  589999999999999999999999999999999999999


Q ss_pred             CCeEEEEecCCCCeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEccCCCEEE
Q 021399           83 TGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTII  162 (313)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~  162 (313)
                      ...+...+.+..++.++-.+|...-++...     .++.+++|++..+.-.     ...+....-.|.++...|+|.+++
T Consensus       114 ~~~~qR~~~~~spVn~vvlhpnQteLis~d-----qsg~irvWDl~~~~c~-----~~liPe~~~~i~sl~v~~dgsml~  183 (311)
T KOG0315|consen  114 SLSCQRNYQHNSPVNTVVLHPNQTELISGD-----QSGNIRVWDLGENSCT-----HELIPEDDTSIQSLTVMPDGSMLA  183 (311)
T ss_pred             CcccchhccCCCCcceEEecCCcceEEeec-----CCCcEEEEEccCCccc-----cccCCCCCcceeeEEEcCCCcEEE
Confidence            977777778888998888887544333222     2344566665432110     111122335688899999999999


Q ss_pred             EeeCCCeEEEEECCCCce---eeecccccCceeceEEEEECCCCCEEEEeeCCCcEEEEECCCC-cEEEEEecCCc-eeE
Q 021399          163 SAGEDAIVRIWDTETGKL---LKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTL-ELIKTYVTERP-VNA  237 (313)
Q Consensus       163 t~~~d~~i~lwd~~~~~~---~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~dg~i~iwd~~~~-~~~~~~~~~~~-~~~  237 (313)
                      .+...|..++|++.....   +..+.+...|+..+..+.+|||+++||++|.|.+++||+.++. +....+...+. +-.
T Consensus       184 a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~ssdktv~iwn~~~~~kle~~l~gh~rWvWd  263 (311)
T KOG0315|consen  184 AANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVKYLATCSSDKTVKIWNTDDFFKLELVLTGHQRWVWD  263 (311)
T ss_pred             EecCCccEEEEEccCCCccccceEhhheecccceEEEEEECCCCcEEEeecCCceEEEEecCCceeeEEEeecCCceEEe
Confidence            999999999999866443   2223344578999999999999999999999999999999987 44344443333 456


Q ss_pred             EEeccCCCEEEEcccccCceeEeeccCCCceeeeeeehhhhhhhccccccccceeEEEEC
Q 021399          238 VTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFN  297 (313)
Q Consensus       238 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~fs  297 (313)
                      ++|+.++.++++++.+ .             ..++||...++.+....+|..+-.|++.+
T Consensus       264 c~FS~dg~YlvTassd-~-------------~~rlW~~~~~k~v~qy~gh~K~~vc~~ln  309 (311)
T KOG0315|consen  264 CAFSADGEYLVTASSD-H-------------TARLWDLSAGKEVRQYQGHHKAAVCVALN  309 (311)
T ss_pred             eeeccCccEEEecCCC-C-------------ceeecccccCceeeecCCcccccEEEEee
Confidence            8899999998887643 2             35788888888888888999888888764

>KOG0645 consensus WD40 repeat protein [General function prediction only]

Probab=99.98  E-value=2.4e-29  Score=194.98  Aligned_cols=272  Identities=21%  Similarity=0.329  Sum_probs=197.5

Q ss_pred             cccccccccceeEEEEccC-CCEEEEeeCCCCeEEEeCCCC---cEEEEe-cCCCCceEEEEECCCCCeEEEeeCCCcEE
Q 021399            3 PILMKGHERPLTYLKYNKD-GDLLFSCAKDHTPTVWFADNG---ERLGTY-RGHNGAVWCCDVSRDSMTLITGSADQTAK   77 (313)
Q Consensus         3 ~~~l~~h~~~v~~~~fs~~-g~~l~s~s~d~~i~iw~~~~~---~~~~~~-~~H~~~V~~~~~~~~~~~l~s~s~D~~v~   77 (313)
                      .+.+.+|++.+..++|+|- |..|+|||.|+.||||+...+   .+...+ .+|+..|.+++|+|.|++|++||-|.++-
T Consensus         7 ~~~~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~t~~   86 (312)
T KOG0645|consen    7 EQKLSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFDATVV   86 (312)
T ss_pred             EEeecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEeeccceEE
Confidence            4678999999999999998 889999999999999998743   344444 46999999999999999999999999999


Q ss_pred             EEECCCCe--EEEEec-CCCCeeEEEeecCCeEEEEE-CCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEE
Q 021399           78 LWNVETGA--QLFTFN-FDSPARSVDFAVGDKLAVIT-TDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAV  153 (313)
Q Consensus        78 vWd~~~~~--~~~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~  153 (313)
                      ||.-..++  ++-++. +...+.++.|++.+.+++.. .++..      =++.+.   .+..-+...+++.|...|..+.
T Consensus        87 Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSV------WiWe~d---eddEfec~aVL~~HtqDVK~V~  157 (312)
T KOG0645|consen   87 IWKKEDGEFECVATLEGHENEVKCVAWSASGNYLATCSRDKSV------WIWEID---EDDEFECIAVLQEHTQDVKHVI  157 (312)
T ss_pred             EeecCCCceeEEeeeeccccceeEEEEcCCCCEEEEeeCCCeE------EEEEec---CCCcEEEEeeeccccccccEEE
Confidence            99876554  443443 56788999999866555443 33211      111111   2233456778899999999999


Q ss_pred             EccCCCEEEEeeCCCeEEEEECCCC---ceeeecccccCceeceEEEEECCCCCEEEEeeCCCcEEEEECCCCcEEEEEe
Q 021399          154 WGPLNRTIISAGEDAIVRIWDTETG---KLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYV  230 (313)
Q Consensus       154 ~~~~~~~i~t~~~d~~i~lwd~~~~---~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~  230 (313)
                      |+|....+++++.|.+|++|+-...   .+.+++   .+|...|.+++|++.|..+++++.|++++||-..+.-.   ..
T Consensus       158 WHPt~dlL~S~SYDnTIk~~~~~~dddW~c~~tl---~g~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~~~~~---~~  231 (312)
T KOG0645|consen  158 WHPTEDLLFSCSYDNTIKVYRDEDDDDWECVQTL---DGHENTVWSLAFDNIGSRLVSCSDDGTVSIWRLYTDLS---GM  231 (312)
T ss_pred             EcCCcceeEEeccCCeEEEEeecCCCCeeEEEEe---cCccceEEEEEecCCCceEEEecCCcceEeeeeccCcc---hh
Confidence            9999999999999999999987633   334444   47888999999999999999999999999998653221   13


Q ss_pred             cCCceeEEEeccCCCEEEEcccccCceeEeeccCCCceeeeeeehhhhhh-hccccccccceeEEEECCC
Q 021399          231 TERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEE-IGGVKGHFGPINALAFNPD  299 (313)
Q Consensus       231 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~h~~~V~~~~fspd  299 (313)
                      +.+++..++|.  .+.++.+||++...+  +.....      -+..+-+. ...-.+|.-.|++++|+|.
T Consensus       232 ~sr~~Y~v~W~--~~~IaS~ggD~~i~l--f~~s~~------~d~p~~~l~~~~~~aHe~dVNsV~w~p~  291 (312)
T KOG0645|consen  232 HSRALYDVPWD--NGVIASGGGDDAIRL--FKESDS------PDEPSWNLLAKKEGAHEVDVNSVQWNPK  291 (312)
T ss_pred             cccceEeeeec--ccceEeccCCCEEEE--EEecCC------CCCchHHHHHhhhcccccccceEEEcCC
Confidence            45678888887  234444444433222  111110      00111111 2234689999999999994

>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.98  E-value=2.4e-30  Score=196.92  Aligned_cols=268  Identities=22%  Similarity=0.371  Sum_probs=209.1

Q ss_pred             ccccccccceeEEEEccCCCEEEEeeCCCCeEEEeCCCCcEEEEecCCCCceEEEEECCCCCeEEEeeCCCcEEEEECCC
Q 021399            4 ILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVET   83 (313)
Q Consensus         4 ~~l~~h~~~v~~~~fs~~g~~l~s~s~d~~i~iw~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~v~vWd~~~   83 (313)
                      .+|..|.++|..++|+-||++.++++.|++||+|+...+.+++++.+|..+|..++.+.|+..|++||.|+.+.+||+++
T Consensus        11 ~~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~liktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~vwDV~T   90 (307)
T KOG0316|consen   11 SILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIKTYSGHGHEVLDAALSSDNSKFASCGGDKAVQVWDVNT   90 (307)
T ss_pred             eeecccccceEEEEEccCCCEEEEcCCCceEEeecccccceeeeecCCCceeeeccccccccccccCCCCceEEEEEccc
Confidence            36789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CeEEEEec-CCCCeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEccCCCEEE
Q 021399           84 GAQLFTFN-FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTII  162 (313)
Q Consensus        84 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~  162 (313)
                      ++.+..+. +...++.+.|.....+++...     ++..++.|+-    ...+.+++..+..-...|.++...  +..|+
T Consensus        91 Gkv~Rr~rgH~aqVNtV~fNeesSVv~Sgs-----fD~s~r~wDC----RS~s~ePiQildea~D~V~Si~v~--~heIv  159 (307)
T KOG0316|consen   91 GKVDRRFRGHLAQVNTVRFNEESSVVASGS-----FDSSVRLWDC----RSRSFEPIQILDEAKDGVSSIDVA--EHEIV  159 (307)
T ss_pred             CeeeeecccccceeeEEEecCcceEEEecc-----ccceeEEEEc----ccCCCCccchhhhhcCceeEEEec--ccEEE
Confidence            99988875 456788888887766655432     2233333331    122345555555555566666655  35699


Q ss_pred             EeeCCCeEEEEECCCCceeeecccccCceeceEEEEECCCCCEEEEeeCCCcEEEEECCCCcEEEEEecCCc---eeEEE
Q 021399          163 SAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTERP---VNAVT  239 (313)
Q Consensus       163 t~~~d~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~---~~~~~  239 (313)
                      .|+.||++|.||++.+++....     ...+|++++|++|+++.+.++.|+++++.|-++++++..+.....   -..++
T Consensus       160 aGS~DGtvRtydiR~G~l~sDy-----~g~pit~vs~s~d~nc~La~~l~stlrLlDk~tGklL~sYkGhkn~eykldc~  234 (307)
T KOG0316|consen  160 AGSVDGTVRTYDIRKGTLSSDY-----FGHPITSVSFSKDGNCSLASSLDSTLRLLDKETGKLLKSYKGHKNMEYKLDCC  234 (307)
T ss_pred             eeccCCcEEEEEeecceeehhh-----cCCcceeEEecCCCCEEEEeeccceeeecccchhHHHHHhcccccceeeeeee
Confidence            9999999999999999876543     345899999999999999999999999999999999988764321   22234


Q ss_pred             eccCCCEEEEcccccCceeEeeccCCCceeeeeeehhhhhhhccccccccc-eeEEEECCCCC
Q 021399          240 MSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGP-INALAFNPDGK  301 (313)
Q Consensus       240 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~-V~~~~fspdgk  301 (313)
                      ++.. +..+++|+.|+ .            +.+||+...+.+-++..|..+ |.+++++|.-.
T Consensus       235 l~qs-dthV~sgSEDG-~------------Vy~wdLvd~~~~sk~~~~~~v~v~dl~~hp~~~  283 (307)
T KOG0316|consen  235 LNQS-DTHVFSGSEDG-K------------VYFWDLVDETQISKLSVVSTVIVTDLSCHPTMD  283 (307)
T ss_pred             eccc-ceeEEeccCCc-e------------EEEEEeccceeeeeeccCCceeEEeeecccCcc
Confidence            4333 34455666554 2            346777667777778888888 89999999743

>KOG1407 consensus WD40 repeat protein [Function unknown]

Probab=99.98  E-value=2.5e-30  Score=199.49  Aligned_cols=275  Identities=17%  Similarity=0.246  Sum_probs=207.2

Q ss_pred             CcccccccccceeEEEEccCCCEEEEeeCCCCeEEEeCCCCcEEE--EecCCCCceEEEEECCC-CCeEEEeeCCCcEEE
Q 021399            2 RPILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLG--TYRGHNGAVWCCDVSRD-SMTLITGSADQTAKL   78 (313)
Q Consensus         2 ~~~~l~~h~~~v~~~~fs~~g~~l~s~s~d~~i~iw~~~~~~~~~--~~~~H~~~V~~~~~~~~-~~~l~s~s~D~~v~v   78 (313)
                      ..+.+++|.+.|.+++|+.+|..|++|+.|+++++|+++..+...  ..++|.+.|-.++|+|. ..+|++++.|.+|++
T Consensus        12 ~~r~~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~   91 (313)
T KOG1407|consen   12 KRRELQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRI   91 (313)
T ss_pred             hhHHhhhhhhcceEEEEcccCceeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEE
Confidence            346789999999999999999999999999999999998775543  45789999999999874 469999999999999


Q ss_pred             EECCCCeEEEEecCCCCeeEEEeecCCeEEEEE-CCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEccC
Q 021399           79 WNVETGAQLFTFNFDSPARSVDFAVGDKLAVIT-TDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPL  157 (313)
Q Consensus        79 Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~  157 (313)
                      ||+++++++...........+.++|++..+++. .+.....      .+...       ..++.-+--.-.++.+.|+..
T Consensus        92 wd~r~~k~~~~i~~~~eni~i~wsp~g~~~~~~~kdD~it~------id~r~-------~~~~~~~~~~~e~ne~~w~~~  158 (313)
T KOG1407|consen   92 WDIRSGKCTARIETKGENINITWSPDGEYIAVGNKDDRITF------IDART-------YKIVNEEQFKFEVNEISWNNS  158 (313)
T ss_pred             EEeccCcEEEEeeccCcceEEEEcCCCCEEEEecCcccEEE------EEecc-------cceeehhcccceeeeeeecCC
Confidence            999999998887777777778888865554443 3322111      11000       000100111224667888877


Q ss_pred             CCEEEEeeCCCeEEEEECCCCceeeecccccCceeceEEEEECCCCCEEEEeeCCCcEEEEECCCCcEEEEEe-cCCcee
Q 021399          158 NRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYV-TERPVN  236 (313)
Q Consensus       158 ~~~i~t~~~d~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~-~~~~~~  236 (313)
                      +..|+-...-|+|.|-....-+++..+   ..|.....|+.|+|+|+++|+|+.|-.+.+||++...|++.+. .+-+|+
T Consensus       159 nd~Fflt~GlG~v~ILsypsLkpv~si---~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~ELiC~R~isRldwpVR  235 (313)
T KOG1407|consen  159 NDLFFLTNGLGCVEILSYPSLKPVQSI---KAHPSNCICIEFDPDGRYFATGSADALVSLWDVDELICERCISRLDWPVR  235 (313)
T ss_pred             CCEEEEecCCceEEEEecccccccccc---ccCCcceEEEEECCCCceEeeccccceeeccChhHhhhheeeccccCceE
Confidence            777766666799999887655555444   4799999999999999999999999999999999999999986 577999


Q ss_pred             EEEeccCCCEEEEcccccCceeEeeccCCCceeeeeeehhhhhhhccccccccceeEEEECCCCCeeEEEE
Q 021399          237 AVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKRYGFLL  307 (313)
Q Consensus       237 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~fspdgk~~~~~~  307 (313)
                      .++|+-++.+++.+ + .+..+-+.+            .+++..+++++ |.++.+.+||+|.--.|||-.
T Consensus       236 TlSFS~dg~~lASa-S-EDh~IDIA~------------vetGd~~~eI~-~~~~t~tVAWHPk~~LLAyA~  291 (313)
T KOG1407|consen  236 TLSFSHDGRMLASA-S-EDHFIDIAE------------VETGDRVWEIP-CEGPTFTVAWHPKRPLLAYAC  291 (313)
T ss_pred             EEEeccCcceeecc-C-ccceEEeEe------------cccCCeEEEee-ccCCceeEEecCCCceeeEEe
Confidence            99999999876543 3 334433333            34455555554 689999999999999999853

>PTZ00421 coronin; Provisional

Probab=99.98  E-value=5.4e-30  Score=226.99  Aligned_cols=207  Identities=18%  Similarity=0.303  Sum_probs=161.9

Q ss_pred             cccccccccceeEEEEcc-CCCEEEEeeCCCCeEEEeCCCC-------cEEEEecCCCCceEEEEECCCC-CeEEEeeCC
Q 021399            3 PILMKGHERPLTYLKYNK-DGDLLFSCAKDHTPTVWFADNG-------ERLGTYRGHNGAVWCCDVSRDS-MTLITGSAD   73 (313)
Q Consensus         3 ~~~l~~h~~~v~~~~fs~-~g~~l~s~s~d~~i~iw~~~~~-------~~~~~~~~H~~~V~~~~~~~~~-~~l~s~s~D   73 (313)
                      |.++.||.+.|.+++|+| ++++|++|+.|++|++||+.++       +.+.++.+|...|.+++|+|++ ++|+||+.|
T Consensus        68 ~~~l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~D  147 (493)
T PTZ00421         68 PPILLGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGAD  147 (493)
T ss_pred             CceEeCCCCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCC
Confidence            457899999999999999 8899999999999999998765       3467899999999999999985 699999999


Q ss_pred             CcEEEEECCCCeEEEEecCCCCeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEE
Q 021399           74 QTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAV  153 (313)
Q Consensus        74 ~~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~  153 (313)
                      ++|+|||+++++.+.                                                    .+.+|...|.++.
T Consensus       148 gtVrIWDl~tg~~~~----------------------------------------------------~l~~h~~~V~sla  175 (493)
T PTZ00421        148 MVVNVWDVERGKAVE----------------------------------------------------VIKCHSDQITSLE  175 (493)
T ss_pred             CEEEEEECCCCeEEE----------------------------------------------------EEcCCCCceEEEE
Confidence            999999998764321                                                    2345677899999


Q ss_pred             EccCCCEEEEeeCCCeEEEEECCCCceeeecccccCceec-eEEEEECCCCCEEEEee----CCCcEEEEECCCCc-EEE
Q 021399          154 WGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKT-ITSLAKAADGSHFLTGS----LDKSAKLWDARTLE-LIK  227 (313)
Q Consensus       154 ~~~~~~~i~t~~~d~~i~lwd~~~~~~~~~~~~~~~h~~~-v~~~~~s~~~~~l~s~s----~dg~i~iwd~~~~~-~~~  227 (313)
                      |+|++..|++++.|+.|++||+++++.+..+.   +|... ...+.|.+++..+++++    .|++|++||+++.. ++.
T Consensus       176 ~spdG~lLatgs~Dg~IrIwD~rsg~~v~tl~---~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~p~~  252 (493)
T PTZ00421        176 WNLDGSLLCTTSKDKKLNIIDPRDGTIVSSVE---AHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMASPYS  252 (493)
T ss_pred             EECCCCEEEEecCCCEEEEEECCCCcEEEEEe---cCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCCcee
Confidence            99999999999999999999999988766553   45543 44677888888888765    47999999998754 443


Q ss_pred             EEe--cCCceeEEEeccCCCEEEEcccccCceeEeeccCC
Q 021399          228 TYV--TERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRA  265 (313)
Q Consensus       228 ~~~--~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~  265 (313)
                      ...  ....+....|+|+++.+++++..| ..+..||.+.
T Consensus       253 ~~~~d~~~~~~~~~~d~d~~~L~lggkgD-g~Iriwdl~~  291 (493)
T PTZ00421        253 TVDLDQSSALFIPFFDEDTNLLYIGSKGE-GNIRCFELMN  291 (493)
T ss_pred             EeccCCCCceEEEEEcCCCCEEEEEEeCC-CeEEEEEeeC
Confidence            332  223355567899998877765333 3444455443

>KOG0295 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.97  E-value=1.7e-30  Score=208.83  Aligned_cols=233  Identities=23%  Similarity=0.358  Sum_probs=188.7

Q ss_pred             ccccccccceeEEEEccCCCEEEEeeCCCCeEEEeCCC-CcEEEEecCCCCceEEEEECCCCCeEEEeeCCCcEEEEECC
Q 021399            4 ILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADN-GERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVE   82 (313)
Q Consensus         4 ~~l~~h~~~v~~~~fs~~g~~l~s~s~d~~i~iw~~~~-~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~v~vWd~~   82 (313)
                      ..|+||+++|..++|+..|++|+++|.|-.+++||.++ .++++.+.+|+..|.++.|-|.|..++|++.|.+||.|++.
T Consensus       144 ~~LrGHt~sv~di~~~a~Gk~l~tcSsDl~~~LWd~~~~~~c~ks~~gh~h~vS~V~f~P~gd~ilS~srD~tik~We~~  223 (406)
T KOG0295|consen  144 RSLRGHTDSVFDISFDASGKYLATCSSDLSAKLWDFDTFFRCIKSLIGHEHGVSSVFFLPLGDHILSCSRDNTIKAWECD  223 (406)
T ss_pred             hhhhccccceeEEEEecCccEEEecCCccchhheeHHHHHHHHHHhcCcccceeeEEEEecCCeeeecccccceeEEecc
Confidence            46899999999999999999999999999999999987 56788899999999999999999999999999999999999


Q ss_pred             CCeEEEEecCCC-CeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEccC----
Q 021399           83 TGAQLFTFNFDS-PARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPL----  157 (313)
Q Consensus        83 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~----  157 (313)
                      ++-++.++...+ =++.+....++.+.+....     +..+++|-+..      .+....+.+|+.++-++.|-|.    
T Consensus       224 tg~cv~t~~~h~ewvr~v~v~~DGti~As~s~-----dqtl~vW~~~t------~~~k~~lR~hEh~vEci~wap~~~~~  292 (406)
T KOG0295|consen  224 TGYCVKTFPGHSEWVRMVRVNQDGTIIASCSN-----DQTLRVWVVAT------KQCKAELREHEHPVECIAWAPESSYP  292 (406)
T ss_pred             cceeEEeccCchHhEEEEEecCCeeEEEecCC-----CceEEEEEecc------chhhhhhhccccceEEEEecccccCc
Confidence            999988775432 3455555555554443221     22334443322      2223445667777777776543    


Q ss_pred             -----------CCEEEEeeCCCeEEEEECCCCceeeecccccCceeceEEEEECCCCCEEEEeeCCCcEEEEECCCCcEE
Q 021399          158 -----------NRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELI  226 (313)
Q Consensus       158 -----------~~~i~t~~~d~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~  226 (313)
                                 +.++++++.|++|++||+.++.++.++.   +|...|+.++|+|.|+||+|+..|+++++||+++++|.
T Consensus       293 ~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~cL~tL~---ghdnwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~~cm  369 (406)
T KOG0295|consen  293 SISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMCLFTLV---GHDNWVRGVAFSPGGKYILSCADDKTLRVWDLKNLQCM  369 (406)
T ss_pred             chhhccCCCCCccEEEeecccceEEEEeccCCeEEEEEe---cccceeeeeEEcCCCeEEEEEecCCcEEEEEeccceee
Confidence                       2488999999999999999998887764   79999999999999999999999999999999999999


Q ss_pred             EEEe-cCCceeEEEeccCCCEEEEc
Q 021399          227 KTYV-TERPVNAVTMSPLLDHVVLG  250 (313)
Q Consensus       227 ~~~~-~~~~~~~~~~~p~~~~~~~~  250 (313)
                      .++. ++.-+.++.|+-...+++.|
T Consensus       370 k~~~ah~hfvt~lDfh~~~p~VvTG  394 (406)
T KOG0295|consen  370 KTLEAHEHFVTSLDFHKTAPYVVTG  394 (406)
T ss_pred             eccCCCcceeEEEecCCCCceEEec
Confidence            9886 45678999999888876654

>KOG0286 consensus G-protein beta subunit [General function prediction only]

Probab=99.97  E-value=9.2e-30  Score=199.30  Aligned_cols=193  Identities=24%  Similarity=0.406  Sum_probs=172.0

Q ss_pred             ccccccccceeEEEEccCCCEEEEeeCCCCeEEEeCCCCcEEEEecCCCCceEEEEECC-CCCeEEEeeCCCcEEEEECC
Q 021399            4 ILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSR-DSMTLITGSADQTAKLWNVE   82 (313)
Q Consensus         4 ~~l~~h~~~v~~~~fs~~g~~l~s~s~d~~i~iw~~~~~~~~~~~~~H~~~V~~~~~~~-~~~~l~s~s~D~~v~vWd~~   82 (313)
                      +.|.+|++.+.|+.|-+ ..+|+|+|.|.+.-+||++++..+..|.||.+.|.+++++| +++.|+||+.|++.++||++
T Consensus       139 r~l~gHtgylScC~f~d-D~~ilT~SGD~TCalWDie~g~~~~~f~GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R  217 (343)
T KOG0286|consen  139 RELAGHTGYLSCCRFLD-DNHILTGSGDMTCALWDIETGQQTQVFHGHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVR  217 (343)
T ss_pred             eeecCccceeEEEEEcC-CCceEecCCCceEEEEEcccceEEEEecCCcccEEEEecCCCCCCeEEecccccceeeeecc
Confidence            36999999999999987 56889999999999999999999999999999999999999 89999999999999999999


Q ss_pred             CCeEEEEecCCCCeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEccCCCEEE
Q 021399           83 TGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTII  162 (313)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~  162 (313)
                      ++.+++                                                    .+.+|.+.|+.+.|.|+|..|+
T Consensus       218 ~~~c~q----------------------------------------------------tF~ghesDINsv~ffP~G~afa  245 (343)
T KOG0286|consen  218 SGQCVQ----------------------------------------------------TFEGHESDINSVRFFPSGDAFA  245 (343)
T ss_pred             CcceeE----------------------------------------------------eecccccccceEEEccCCCeee
Confidence            875543                                                    3467888999999999999999


Q ss_pred             EeeCCCeEEEEECCCCceeeecccccCceeceEEEEECCCCCEEEEeeCCCcEEEEECCCCcEEEEEe-cCCceeEEEec
Q 021399          163 SAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYV-TERPVNAVTMS  241 (313)
Q Consensus       163 t~~~d~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~-~~~~~~~~~~~  241 (313)
                      +|++|++.|+||++..+.+..+. .......|++++||..|.+|++|..|.++.+||.-.++.+..+. ++..|.++..+
T Consensus       246 tGSDD~tcRlyDlRaD~~~a~ys-~~~~~~gitSv~FS~SGRlLfagy~d~~c~vWDtlk~e~vg~L~GHeNRvScl~~s  324 (343)
T KOG0286|consen  246 TGSDDATCRLYDLRADQELAVYS-HDSIICGITSVAFSKSGRLLFAGYDDFTCNVWDTLKGERVGVLAGHENRVSCLGVS  324 (343)
T ss_pred             ecCCCceeEEEeecCCcEEeeec-cCcccCCceeEEEcccccEEEeeecCCceeEeeccccceEEEeeccCCeeEEEEEC
Confidence            99999999999999887776654 33456789999999999999999999999999988888887775 57789999999


Q ss_pred             cCCCEEEEc
Q 021399          242 PLLDHVVLG  250 (313)
Q Consensus       242 p~~~~~~~~  250 (313)
                      |+|-.++.+
T Consensus       325 ~DG~av~Tg  333 (343)
T KOG0286|consen  325 PDGMAVATG  333 (343)
T ss_pred             CCCcEEEec
Confidence            998766554

>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]

Probab=99.97  E-value=2.8e-30  Score=203.94  Aligned_cols=283  Identities=19%  Similarity=0.314  Sum_probs=211.0

Q ss_pred             cccccccccceeEEEEccCCCEEEEeeCCCCeEEEeCCC------------C------cEEEEecCCCCceEEEEECCCC
Q 021399            3 PILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADN------------G------ERLGTYRGHNGAVWCCDVSRDS   64 (313)
Q Consensus         3 ~~~l~~h~~~v~~~~fs~~g~~l~s~s~d~~i~iw~~~~------------~------~~~~~~~~H~~~V~~~~~~~~~   64 (313)
                      ...|..|+.++.+.+|+|||.++++||.|..|+|.|++.            +      -++.+|-.|..+|+++.|+|..
T Consensus       105 t~ylt~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPre  184 (430)
T KOG0640|consen  105 TKYLTSHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPRE  184 (430)
T ss_pred             eEEEeecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecchh
Confidence            357889999999999999999999999999999999871            1      1467888999999999999999


Q ss_pred             CeEEEeeCCCcEEEEECCCCeEE---EEecCCCCeeEEEeecCCeEEEEECC-CceeccccceeeeeeeCCCCCCCceEE
Q 021399           65 MTLITGSADQTAKLWNVETGAQL---FTFNFDSPARSVDFAVGDKLAVITTD-PFMELNSAIHVKRIARDPADQGGESVL  140 (313)
Q Consensus        65 ~~l~s~s~D~~v~vWd~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~  140 (313)
                      ..|+||+.|++||++|.......   ..+.-..++.++.|+|.+.++++.++ +..      +++++.....-   -...
T Consensus       185 ~ILiS~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGefllvgTdHp~~------rlYdv~T~Qcf---vsan  255 (430)
T KOG0640|consen  185 TILISGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGEFLLVGTDHPTL------RLYDVNTYQCF---VSAN  255 (430)
T ss_pred             heEEeccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecCCCceEEEecCCCce------eEEeccceeEe---eecC
Confidence            99999999999999998643222   12223468899999998877777665 322      23332211000   0000


Q ss_pred             EecCCCCceEEEEEccCCCEEEEeeCCCeEEEEECCCCceeeecccccCc-eeceEEEEECCCCCEEEEeeCCCcEEEEE
Q 021399          141 ILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGH-KKTITSLAKAADGSHFLTGSLDKSAKLWD  219 (313)
Q Consensus       141 ~~~~~~~~i~~~~~~~~~~~i~t~~~d~~i~lwd~~~~~~~~~~~~~~~h-~~~v~~~~~s~~~~~l~s~s~dg~i~iwd  219 (313)
                      .-..|.+.|+++.+++.++..+|++.||.|+|||--+++++.++..  .| ...|++..|..+|++|++.+.|..+++|.
T Consensus       256 Pd~qht~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~--AH~gsevcSa~Ftkn~kyiLsSG~DS~vkLWE  333 (430)
T KOG0640|consen  256 PDDQHTGAITQVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIGN--AHGGSEVCSAVFTKNGKYILSSGKDSTVKLWE  333 (430)
T ss_pred             cccccccceeEEEecCCccEEEEeccCCcEEeeccccHHHHHHHHh--hcCCceeeeEEEccCCeEEeecCCcceeeeee
Confidence            1235788999999999999999999999999999888888877654  34 45789999999999999999999999999


Q ss_pred             CCCCcEEEEEecCC------ceeEEEeccCCCEEEEcccccCceeEeeccCCCceeeeeeehhhhhhhccccccccceeE
Q 021399          220 ARTLELIKTYVTER------PVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINA  293 (313)
Q Consensus       220 ~~~~~~~~~~~~~~------~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~  293 (313)
                      +.++.++.++...+      .-.-..|+-..++++. -..-.+.+..||.|...- ..+|          -.+|++++-.
T Consensus       334 i~t~R~l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~-pDEas~slcsWdaRtadr-~~l~----------slgHn~a~R~  401 (430)
T KOG0640|consen  334 ISTGRMLKEYTGAGTTGRQKHRTQAVFNHTEDYVLF-PDEASNSLCSWDARTADR-VALL----------SLGHNGAVRW  401 (430)
T ss_pred             ecCCceEEEEecCCcccchhhhhhhhhcCccceEEc-cccccCceeeccccchhh-hhhc----------ccCCCCCceE
Confidence            99999999987532      1223456666666553 222234466666654321 1111          2489999999


Q ss_pred             EEECCCCCeeEEEEEEE
Q 021399          294 LAFNPDGKRYGFLLLQI  310 (313)
Q Consensus       294 ~~fspdgk~~~~~~~~~  310 (313)
                      +.-||.  .-|||-|..
T Consensus       402 i~HSP~--~p~FmTcsd  416 (430)
T KOG0640|consen  402 IVHSPV--EPAFMTCSD  416 (430)
T ss_pred             EEeCCC--CCceeeecc
Confidence            999998  467777643

>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]

Probab=99.97  E-value=5.9e-32  Score=216.35  Aligned_cols=252  Identities=24%  Similarity=0.427  Sum_probs=188.3

Q ss_pred             cccceeEEEEccCCCEEEEeeCCCCeEEEeCCCCcEEEEecCCCCceEEEEECCCCCeEEEeeCCCcEEEEECCCCeEEE
Q 021399            9 HERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLF   88 (313)
Q Consensus         9 h~~~v~~~~fs~~g~~l~s~s~d~~i~iw~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~v~vWd~~~~~~~~   88 (313)
                      -.++|+|+.|  |.+.++||..|.+|+|||.++...++.+.||.++|.|+.|.  .+.++|||+|.+|+|||..+++++.
T Consensus       196 ~skgVYClQY--DD~kiVSGlrDnTikiWD~n~~~c~~~L~GHtGSVLCLqyd--~rviisGSSDsTvrvWDv~tge~l~  271 (499)
T KOG0281|consen  196 NSKGVYCLQY--DDEKIVSGLRDNTIKIWDKNSLECLKILTGHTGSVLCLQYD--ERVIVSGSSDSTVRVWDVNTGEPLN  271 (499)
T ss_pred             cCCceEEEEe--cchhhhcccccCceEEeccccHHHHHhhhcCCCcEEeeecc--ceEEEecCCCceEEEEeccCCchhh
Confidence            3567999998  46799999999999999999999999999999999999875  5699999999999999999999876


Q ss_pred             EecC-CCCeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEccCCCEEEEeeCC
Q 021399           89 TFNF-DSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGED  167 (313)
Q Consensus        89 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~t~~~d  167 (313)
                      ++.+ ...+..+.|..+ -++..+.      +..+.+|+.....   ......++.||...++.+.|+.  ++|++++.|
T Consensus       272 tlihHceaVLhlrf~ng-~mvtcSk------DrsiaVWdm~sps---~it~rrVLvGHrAaVNvVdfd~--kyIVsASgD  339 (499)
T KOG0281|consen  272 TLIHHCEAVLHLRFSNG-YMVTCSK------DRSIAVWDMASPT---DITLRRVLVGHRAAVNVVDFDD--KYIVSASGD  339 (499)
T ss_pred             HHhhhcceeEEEEEeCC-EEEEecC------CceeEEEeccCch---HHHHHHHHhhhhhheeeecccc--ceEEEecCC
Confidence            5533 233444444332 2222221      2223344432211   0112235678999999998875  599999999


Q ss_pred             CeEEEEECCCCceeeecccccCceeceEEEEECCCCCEEEEeeCCCcEEEEECCCCcEEEEEe-cCCceeEEEeccCCCE
Q 021399          168 AIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYV-TERPVNAVTMSPLLDH  246 (313)
Q Consensus       168 ~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~-~~~~~~~~~~~p~~~~  246 (313)
                      .+|++|++.+...++++.   +|+..|-|+.+  .+.+++|||+|.+|++||++.|.|++.+. ++..+.++-|..   -
T Consensus       340 RTikvW~~st~efvRtl~---gHkRGIAClQY--r~rlvVSGSSDntIRlwdi~~G~cLRvLeGHEeLvRciRFd~---k  411 (499)
T KOG0281|consen  340 RTIKVWSTSTCEFVRTLN---GHKRGIACLQY--RDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFDN---K  411 (499)
T ss_pred             ceEEEEeccceeeehhhh---cccccceehhc--cCeEEEecCCCceEEEEeccccHHHHHHhchHHhhhheeecC---c
Confidence            999999999988887764   78888888764  68999999999999999999999999986 456789998874   3


Q ss_pred             EEEcccccCceeEeeccCCCceeeeeeehhh---------hhhhccccccccceeEEEEC
Q 021399          247 VVLGGGQDASAVTTTDHRAGKFEAKFFDKIL---------QEEIGGVKGHFGPINALAFN  297 (313)
Q Consensus       247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~h~~~V~~~~fs  297 (313)
                      -+++|+.|+.             +++||..+         .-++-.+.-|+++|..+.|.
T Consensus       412 rIVSGaYDGk-------------ikvWdl~aaldpra~~~~~Cl~~lv~hsgRVFrLQFD  458 (499)
T KOG0281|consen  412 RIVSGAYDGK-------------IKVWDLQAALDPRAPASTLCLRTLVEHSGRVFRLQFD  458 (499)
T ss_pred             eeeeccccce-------------EEEEecccccCCcccccchHHHhhhhccceeEEEeec
Confidence            3566666542             44555432         12445667899999999984

>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.97  E-value=2.4e-30  Score=224.63  Aligned_cols=241  Identities=22%  Similarity=0.316  Sum_probs=199.9

Q ss_pred             ccccccccceeEEEEccCCCEEEEeeCCCCeEEEeCCCCc----EEEEecCCCCceEEEEECCCC-CeEEEeeCCCcEEE
Q 021399            4 ILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGE----RLGTYRGHNGAVWCCDVSRDS-MTLITGSADQTAKL   78 (313)
Q Consensus         4 ~~l~~h~~~v~~~~fs~~g~~l~s~s~d~~i~iw~~~~~~----~~~~~~~H~~~V~~~~~~~~~-~~l~s~s~D~~v~v   78 (313)
                      .++.||++.|.++....+|.+|+|||.|.++++|.++++.    ++....+|++.|.+++++..+ ..|+|+|.|.++|+
T Consensus       359 ~ii~GH~e~vlSL~~~~~g~llat~sKD~svilWr~~~~~~~~~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~  438 (775)
T KOG0319|consen  359 QIIPGHTEAVLSLDVWSSGDLLATGSKDKSVILWRLNNNCSKSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKL  438 (775)
T ss_pred             EEEeCchhheeeeeecccCcEEEEecCCceEEEEEecCCcchhhhhhhhcccccccceeeecccCccEEEEecCCceEEE
Confidence            3789999999999866788999999999999999875443    356678999999999997655 48999999999999


Q ss_pred             EECCCCeEEEEecCCCCeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEccCC
Q 021399           79 WNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLN  158 (313)
Q Consensus        79 Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~  158 (313)
                      |++...+...     .++            ..                          ........|...|++++++|+.
T Consensus       439 W~l~~s~~~~-----~~~------------~~--------------------------~~~~t~~aHdKdIN~Vaia~nd  475 (775)
T KOG0319|consen  439 WDLPKSKETA-----FPI------------VL--------------------------TCRYTERAHDKDINCVAIAPND  475 (775)
T ss_pred             ecCCCccccc-----ccc------------ee--------------------------hhhHHHHhhcccccceEecCCC
Confidence            9987532110     000            00                          0001224578899999999999


Q ss_pred             CEEEEeeCCCeEEEEECCCCceeeecccccCceeceEEEEECCCCCEEEEeeCCCcEEEEECCCCcEEEEEe-cCCceeE
Q 021399          159 RTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYV-TERPVNA  237 (313)
Q Consensus       159 ~~i~t~~~d~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~-~~~~~~~  237 (313)
                      ..|+|||.|.+.+||++++......+   .+|+..+.++.|+|..+.++|+|.|++||||.+.++.|++++. +...+..
T Consensus       476 kLiAT~SqDktaKiW~le~~~l~~vL---sGH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~fSClkT~eGH~~aVlr  552 (775)
T KOG0319|consen  476 KLIATGSQDKTAKIWDLEQLRLLGVL---SGHTRGVWCVSFSKNDQLLATCSGDKTVKIWSISTFSCLKTFEGHTSAVLR  552 (775)
T ss_pred             ceEEecccccceeeecccCceEEEEe---eCCccceEEEEeccccceeEeccCCceEEEEEeccceeeeeecCccceeEe
Confidence            99999999999999999976665554   4899999999999999999999999999999999999999997 5667888


Q ss_pred             EEeccCCCEEEEcccccCceeEeeccCCCceeeeeeehhhhhhhccccccccceeEEEECCCCCeeE
Q 021399          238 VTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKRYG  304 (313)
Q Consensus       238 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~fspdgk~~~  304 (313)
                      ++|-..+.+++.+|+++              .+++|+..+.+++..+.+|+..||+++-+|++..|.
T Consensus       553 a~F~~~~~qliS~~adG--------------liKlWnikt~eC~~tlD~H~DrvWaL~~~~~~~~~~  605 (775)
T KOG0319|consen  553 ASFIRNGKQLISAGADG--------------LIKLWNIKTNECEMTLDAHNDRVWALSVSPLLDMFV  605 (775)
T ss_pred             eeeeeCCcEEEeccCCC--------------cEEEEeccchhhhhhhhhccceeEEEeecCccceeE
Confidence            99988888887765533              478999999999999999999999999999988554

>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]

Probab=99.97  E-value=5.1e-28  Score=203.07  Aligned_cols=270  Identities=21%  Similarity=0.283  Sum_probs=197.8

Q ss_pred             cccccccceeEEEEccCCCEEEEeeCCCCeEEEeCCCCc--EEEEecCCCCceEEEEECCCCCeEEEeeCC----CcEEE
Q 021399            5 LMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGE--RLGTYRGHNGAVWCCDVSRDSMTLITGSAD----QTAKL   78 (313)
Q Consensus         5 ~l~~h~~~v~~~~fs~~g~~l~s~s~d~~i~iw~~~~~~--~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D----~~v~v   78 (313)
                      ...+|...++-.+|||.|-+++||...|.|||||....+  +..+++--.++|..++|+++++.++..|..    |.+.+
T Consensus        54 iYtEH~~~vtVAkySPsG~yiASGD~sG~vRIWdtt~~~hiLKnef~v~aG~I~Di~Wd~ds~RI~avGEGrerfg~~F~  133 (603)
T KOG0318|consen   54 IYTEHAHQVTVAKYSPSGFYIASGDVSGKVRIWDTTQKEHILKNEFQVLAGPIKDISWDFDSKRIAAVGEGRERFGHVFL  133 (603)
T ss_pred             eeccccceeEEEEeCCCceEEeecCCcCcEEEEeccCcceeeeeeeeecccccccceeCCCCcEEEEEecCccceeEEEE
Confidence            456799999999999999999999999999999987644  345777788999999999999988776532    56778


Q ss_pred             EECCCCeEEEEe-cCCCCeeEEEeecCCeEEEEEC--CCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEc
Q 021399           79 WNVETGAQLFTF-NFDSPARSVDFAVGDKLAVITT--DPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWG  155 (313)
Q Consensus        79 Wd~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~  155 (313)
                      ||..+.  +-.+ .+...+.+++|.|..-+-.+..  +....+.         .   .+.-+....+..|..-|+++.++
T Consensus       134 ~DSG~S--vGei~GhSr~ins~~~KpsRPfRi~T~sdDn~v~ff---------e---GPPFKFk~s~r~HskFV~~VRys  199 (603)
T KOG0318|consen  134 WDSGNS--VGEITGHSRRINSVDFKPSRPFRIATGSDDNTVAFF---------E---GPPFKFKSSFREHSKFVNCVRYS  199 (603)
T ss_pred             ecCCCc--cceeeccceeEeeeeccCCCceEEEeccCCCeEEEe---------e---CCCeeeeecccccccceeeEEEC
Confidence            886432  1111 2233445555555333222211  1111100         0   01112233455678889999999


Q ss_pred             cCCCEEEEeeCCCeEEEEECCCCceeeecccccCceeceEEEEECCCCCEEEEeeCCCcEEEEECCCCcEEEEEecCCc-
Q 021399          156 PLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTERP-  234 (313)
Q Consensus       156 ~~~~~i~t~~~d~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~-  234 (313)
                      |+|.+|++++.||+|.+||=++++.+..+....+|++.|.+++|+||+..++|+|.|.++||||+.+.++++++..... 
T Consensus       200 PDG~~Fat~gsDgki~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v  279 (603)
T KOG0318|consen  200 PDGSRFATAGSDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSPDSTQFLTVSADKTIKIWDVSTNSLVSTWPMGSTV  279 (603)
T ss_pred             CCCCeEEEecCCccEEEEcCCCccEEEEecCCCCccccEEEEEECCCCceEEEecCCceEEEEEeeccceEEEeecCCch
Confidence            9999999999999999999999999998887789999999999999999999999999999999999999999875332 


Q ss_pred             ---eeEEEeccCCCEEEEcccccCceeEeeccCCCceeeeeeehhhhhhhccccccccceeEEEECCCCCeeE
Q 021399          235 ---VNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKRYG  304 (313)
Q Consensus       235 ---~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~fspdgk~~~  304 (313)
                         .-.+-|.  .++++.-.- ++             .+.+++......+..++||+..|++++.+||++.+=
T Consensus       280 ~dqqvG~lWq--kd~lItVSl-~G-------------~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~  336 (603)
T KOG0318|consen  280 EDQQVGCLWQ--KDHLITVSL-SG-------------TINYLNPSDPSVLKVISGHNKSITALTVSPDGKTIY  336 (603)
T ss_pred             hceEEEEEEe--CCeEEEEEc-Cc-------------EEEEecccCCChhheecccccceeEEEEcCCCCEEE
Confidence               2233444  333333211 11             245666666667788999999999999999997753

>KOG0283 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.97  E-value=2.8e-29  Score=221.32  Aligned_cols=227  Identities=21%  Similarity=0.394  Sum_probs=175.9

Q ss_pred             cc-ccccceeEEEEccCCCEEEEeeCCCCeEEEeCCC--------------------------------C----------
Q 021399            6 MK-GHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADN--------------------------------G----------   42 (313)
Q Consensus         6 l~-~h~~~v~~~~fs~~g~~l~s~s~d~~i~iw~~~~--------------------------------~----------   42 (313)
                      +. .|.++|+++.||+||++||+||+|+.|+||.+..                                .          
T Consensus       262 ~~~ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~  341 (712)
T KOG0283|consen  262 ISNAHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRK  341 (712)
T ss_pred             cccccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCcccccccccccccccccc
Confidence            44 8999999999999999999999999999996654                                0          


Q ss_pred             ------------------cEEEEecCCCCceEEEEECCCCCeEEEeeCCCcEEEEECCCCeEEEEecCCCCeeEEEeecC
Q 021399           43 ------------------ERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVG  104 (313)
Q Consensus        43 ------------------~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~  104 (313)
                                        +++..|.||.+.|..++|+.+ ++|+|+|.|.|||+|++...+++..+.             
T Consensus       342 ~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn-~fLLSSSMDKTVRLWh~~~~~CL~~F~-------------  407 (712)
T KOG0283|consen  342 GSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKN-NFLLSSSMDKTVRLWHPGRKECLKVFS-------------  407 (712)
T ss_pred             ccCCccccCCCccccccccchhhhhccchhheecccccC-CeeEeccccccEEeecCCCcceeeEEe-------------
Confidence                              112235799999999999975 589999999999999998877765442             


Q ss_pred             CeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEccC-CCEEEEeeCCCeEEEEECCCCceeee
Q 021399          105 DKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPL-NRTIISAGEDAIVRIWDTETGKLLKE  183 (313)
Q Consensus       105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~i~t~~~d~~i~lwd~~~~~~~~~  183 (313)
                                                              |..-|++++|+|. .++|++|+-|++||||++...+..- 
T Consensus       408 ----------------------------------------HndfVTcVaFnPvDDryFiSGSLD~KvRiWsI~d~~Vv~-  446 (712)
T KOG0283|consen  408 ----------------------------------------HNDFVTCVAFNPVDDRYFISGSLDGKVRLWSISDKKVVD-  446 (712)
T ss_pred             ----------------------------------------cCCeeEEEEecccCCCcEeecccccceEEeecCcCeeEe-
Confidence                                                    5567888889885 5899999999999999998765432 


Q ss_pred             cccccCceeceEEEEECCCCCEEEEeeCCCcEEEEECCCCcEEEEEec---------CCceeEEEeccCCCE-EEEcccc
Q 021399          184 SDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVT---------ERPVNAVTMSPLLDH-VVLGGGQ  253 (313)
Q Consensus       184 ~~~~~~h~~~v~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~---------~~~~~~~~~~p~~~~-~~~~~~~  253 (313)
                        ... -...|++++|.|||+..+.|+.+|.+++|+.+..+......-         ...|..+.|.|.... ++++.. 
T Consensus       447 --W~D-l~~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I~~~~~Kk~~~~rITG~Q~~p~~~~~vLVTSn-  522 (712)
T KOG0283|consen  447 --WND-LRDLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHIRLHNKKKKQGKRITGLQFFPGDPDEVLVTSN-  522 (712)
T ss_pred             --ehh-hhhhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeeeEeeccCccccCceeeeeEecCCCCCeEEEecC-
Confidence              222 347899999999999999999999999999998877655431         235888888886553 333322 


Q ss_pred             cCceeEeeccCCCceeeeeeehhhhhhhccccccccc--eeEEEECCCCCeeE
Q 021399          254 DASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGP--INALAFNPDGKRYG  304 (313)
Q Consensus       254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~--V~~~~fspdgk~~~  304 (313)
                              |.     .||++|......+.+++|+...  -....|+.|||.+.
T Consensus       523 --------DS-----rIRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~Dgk~IV  562 (712)
T KOG0283|consen  523 --------DS-----RIRIYDGRDKDLVHKFKGFRNTSSQISASFSSDGKHIV  562 (712)
T ss_pred             --------CC-----ceEEEeccchhhhhhhcccccCCcceeeeEccCCCEEE
Confidence                    22     3677777666667777766432  25668999999964

>PTZ00420 coronin; Provisional

Probab=99.97  E-value=3.1e-28  Score=217.00  Aligned_cols=227  Identities=17%  Similarity=0.279  Sum_probs=165.3

Q ss_pred             cccccccceeEEEEccC-CCEEEEeeCCCCeEEEeCCCCc--------EEEEecCCCCceEEEEECCCCCe-EEEeeCCC
Q 021399            5 LMKGHERPLTYLKYNKD-GDLLFSCAKDHTPTVWFADNGE--------RLGTYRGHNGAVWCCDVSRDSMT-LITGSADQ   74 (313)
Q Consensus         5 ~l~~h~~~v~~~~fs~~-g~~l~s~s~d~~i~iw~~~~~~--------~~~~~~~H~~~V~~~~~~~~~~~-l~s~s~D~   74 (313)
                      .+.+|.++|.+++|+|+ +.+|+||+.|+.|+|||+.++.        .+..+.+|...|.+++|+|++.. ++|++.|+
T Consensus        69 ~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~sVaf~P~g~~iLaSgS~Dg  148 (568)
T PTZ00420         69 KLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISIIDWNPMNYYIMCSSGFDS  148 (568)
T ss_pred             EEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEEEEEECCCCCeEEEEEeCCC
Confidence            68899999999999997 7899999999999999987642        34578899999999999998874 57999999


Q ss_pred             cEEEEECCCCeEEEEecCCCCeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEE
Q 021399           75 TAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVW  154 (313)
Q Consensus        75 ~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~  154 (313)
                      +|++||+++++.+..+                                                    . +...|.++.|
T Consensus       149 tIrIWDl~tg~~~~~i----------------------------------------------------~-~~~~V~Slsw  175 (568)
T PTZ00420        149 FVNIWDIENEKRAFQI----------------------------------------------------N-MPKKLSSLKW  175 (568)
T ss_pred             eEEEEECCCCcEEEEE----------------------------------------------------e-cCCcEEEEEE
Confidence            9999999876533211                                                    1 2245788999


Q ss_pred             ccCCCEEEEeeCCCeEEEEECCCCceeeecccccCceece-----EEEEECCCCCEEEEeeCCC----cEEEEECCC-Cc
Q 021399          155 GPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTI-----TSLAKAADGSHFLTGSLDK----SAKLWDART-LE  224 (313)
Q Consensus       155 ~~~~~~i~t~~~d~~i~lwd~~~~~~~~~~~~~~~h~~~v-----~~~~~s~~~~~l~s~s~dg----~i~iwd~~~-~~  224 (313)
                      +|+|..|++++.|+.|+|||+++++.+.++.   +|.+.+     ....|++++.+|++++.|+    +|+|||++. .+
T Consensus       176 spdG~lLat~s~D~~IrIwD~Rsg~~i~tl~---gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~  252 (568)
T PTZ00420        176 NIKGNLLSGTCVGKHMHIIDPRKQEIASSFH---IHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTS  252 (568)
T ss_pred             CCCCCEEEEEecCCEEEEEECCCCcEEEEEe---cccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCC
Confidence            9999999999999999999999988776553   465543     2334568999999988875    799999995 56


Q ss_pred             EEEEEecCCceeE--EEeccCCCEEEEcccccCceeEeeccCCCceeeeeeehhhhhhhccccccccceeEEEECCC
Q 021399          225 LIKTYVTERPVNA--VTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPD  299 (313)
Q Consensus       225 ~~~~~~~~~~~~~--~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~fspd  299 (313)
                      ++.....+.....  -.+.++.+.++++|+.| ..++.|+.+.+.+          ..+..+. +..++..++|.|.
T Consensus       253 pl~~~~ld~~~~~L~p~~D~~tg~l~lsGkGD-~tIr~~e~~~~~~----------~~l~~~~-s~~p~~g~~f~Pk  317 (568)
T PTZ00420        253 ALVTMSIDNASAPLIPHYDESTGLIYLIGKGD-GNCRYYQHSLGSI----------RKVNEYK-SCSPFRSFGFLPK  317 (568)
T ss_pred             ceEEEEecCCccceEEeeeCCCCCEEEEEECC-CeEEEEEccCCcE----------Eeecccc-cCCCccceEEccc
Confidence            6666544333222  23445444555554433 3345555433211          1122233 5778888999986

>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]

Probab=99.97  E-value=2.6e-28  Score=202.31  Aligned_cols=235  Identities=22%  Similarity=0.339  Sum_probs=198.8

Q ss_pred             ccccccccceeEEEEccCCCEEEEeeCCCCeEEEeCCCCcEEEEecCCCCceEEEEECCCCCeEEEeeCCCcEEEEECCC
Q 021399            4 ILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVET   83 (313)
Q Consensus         4 ~~l~~h~~~v~~~~fs~~g~~l~s~s~d~~i~iw~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~v~vWd~~~   83 (313)
                      .+|..|+++|.+|.|+.+|.+|++++.|+++.+||..+++....|.-|+.+-..+.|-. +..|++++.|+.|+|+.+..
T Consensus       270 ~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~~q~f~~~s~~~lDVdW~~-~~~F~ts~td~~i~V~kv~~  348 (524)
T KOG0273|consen  270 STLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTVKQQFEFHSAPALDVDWQS-NDEFATSSTDGCIHVCKVGE  348 (524)
T ss_pred             hhhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCceEEEeeeeccCCccceEEec-CceEeecCCCceEEEEEecC
Confidence            47889999999999999999999999999999999999999999999998867778864 45799999999999999988


Q ss_pred             CeEEEEec-CCCCeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEccCC----
Q 021399           84 GAQLFTFN-FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLN----  158 (313)
Q Consensus        84 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~----  158 (313)
                      ..++.++. +..++..+.|.|...+++..++.     ....+|...      ....+..+..|...|+.+.|+|.+    
T Consensus       349 ~~P~~t~~GH~g~V~alk~n~tg~LLaS~SdD-----~TlkiWs~~------~~~~~~~l~~Hskei~t~~wsp~g~v~~  417 (524)
T KOG0273|consen  349 DRPVKTFIGHHGEVNALKWNPTGSLLASCSDD-----GTLKIWSMG------QSNSVHDLQAHSKEIYTIKWSPTGPVTS  417 (524)
T ss_pred             CCcceeeecccCceEEEEECCCCceEEEecCC-----CeeEeeecC------CCcchhhhhhhccceeeEeecCCCCccC
Confidence            77776654 57789999999977777665542     222223221      122344567888999999999886    


Q ss_pred             -----CEEEEeeCCCeEEEEECCCCceeeecccccCceeceEEEEECCCCCEEEEeeCCCcEEEEECCCCcEEEEEecCC
Q 021399          159 -----RTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTER  233 (313)
Q Consensus       159 -----~~i~t~~~d~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~  233 (313)
                           ..+++++.|++|++||+..+.++..+.   .|...|.+++|+|+|.++|+|+.||.|.+|+.++++.++.+....
T Consensus       418 n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~---kH~~pVysvafS~~g~ylAsGs~dg~V~iws~~~~~l~~s~~~~~  494 (524)
T KOG0273|consen  418 NPNMNLMLASASFDSTVKLWDVESGVPIHTLM---KHQEPVYSVAFSPNGRYLASGSLDGCVHIWSTKTGKLVKSYQGTG  494 (524)
T ss_pred             CCcCCceEEEeecCCeEEEEEccCCceeEeec---cCCCceEEEEecCCCcEEEecCCCCeeEeccccchheeEeecCCC
Confidence                 368999999999999999999887764   699999999999999999999999999999999999999999888


Q ss_pred             ceeEEEeccCCCEEEEcccc
Q 021399          234 PVNAVTMSPLLDHVVLGGGQ  253 (313)
Q Consensus       234 ~~~~~~~~p~~~~~~~~~~~  253 (313)
                      .|+.++|+..++.+.++.++
T Consensus       495 ~Ifel~Wn~~G~kl~~~~sd  514 (524)
T KOG0273|consen  495 GIFELCWNAAGDKLGACASD  514 (524)
T ss_pred             eEEEEEEcCCCCEEEEEecC
Confidence            89999999999887766544

>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]

Probab=99.97  E-value=1.9e-30  Score=206.17  Aligned_cols=189  Identities=31%  Similarity=0.501  Sum_probs=162.5

Q ss_pred             ccccceeEEEEccCCCEEEEeeCCCCeEEEeCCCCcEEEE--------ecCCCCceEEEEECCCCCeEEEeeCCCcEEEE
Q 021399            8 GHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGT--------YRGHNGAVWCCDVSRDSMTLITGSADQTAKLW   79 (313)
Q Consensus         8 ~h~~~v~~~~fs~~g~~l~s~s~d~~i~iw~~~~~~~~~~--------~~~H~~~V~~~~~~~~~~~l~s~s~D~~v~vW   79 (313)
                      |.+..+.|..|||||++|++||.||-|.+|+..+|+..+.        |.-|+.+|.|++|+.|.+.++||+.||.||+|
T Consensus       211 g~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvW  290 (508)
T KOG0275|consen  211 GQKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKVW  290 (508)
T ss_pred             ccccchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCCcEEEE
Confidence            4455688999999999999999999999999999986543        44578899999999999999999999999999


Q ss_pred             ECCCCeEEEEecCCCCeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEccCCC
Q 021399           80 NVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNR  159 (313)
Q Consensus        80 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~  159 (313)
                      .+++|+++..+.                                                   ..|...|+++.|+.++.
T Consensus       291 ri~tG~ClRrFd---------------------------------------------------rAHtkGvt~l~FSrD~S  319 (508)
T KOG0275|consen  291 RIETGQCLRRFD---------------------------------------------------RAHTKGVTCLSFSRDNS  319 (508)
T ss_pred             EEecchHHHHhh---------------------------------------------------hhhccCeeEEEEccCcc
Confidence            999987754331                                                   24667788999999999


Q ss_pred             EEEEeeCCCeEEEEECCCCceeeecccccCceeceEEEEECCCCCEEEEeeCCCcEEEEECCCCcEEEEEec---CCcee
Q 021399          160 TIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVT---ERPVN  236 (313)
Q Consensus       160 ~i~t~~~d~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~---~~~~~  236 (313)
                      .+++++.|.++|+-.++++++++++.   +|+..|+...|++||++|+++|.||+|++|+.++.+|+.++..   +.+++
T Consensus       320 qiLS~sfD~tvRiHGlKSGK~LKEfr---GHsSyvn~a~ft~dG~~iisaSsDgtvkvW~~KtteC~~Tfk~~~~d~~vn  396 (508)
T KOG0275|consen  320 QILSASFDQTVRIHGLKSGKCLKEFR---GHSSYVNEATFTDDGHHIISASSDGTVKVWHGKTTECLSTFKPLGTDYPVN  396 (508)
T ss_pred             hhhcccccceEEEeccccchhHHHhc---CccccccceEEcCCCCeEEEecCCccEEEecCcchhhhhhccCCCCcccce
Confidence            99999999999999999999998875   7999999999999999999999999999999999999988863   44677


Q ss_pred             EEEeccCC-CEEEEc
Q 021399          237 AVTMSPLL-DHVVLG  250 (313)
Q Consensus       237 ~~~~~p~~-~~~~~~  250 (313)
                      .+-.-|.. .+++++
T Consensus       397 sv~~~PKnpeh~iVC  411 (508)
T KOG0275|consen  397 SVILLPKNPEHFIVC  411 (508)
T ss_pred             eEEEcCCCCceEEEE
Confidence            77766643 345554

>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.97  E-value=1.2e-27  Score=188.28  Aligned_cols=270  Identities=21%  Similarity=0.306  Sum_probs=200.0

Q ss_pred             ccccceeEEEEccC-CCEEEEeeCCCCeEEEeCCCC-cE-EEEecCCCCceEEEEECCCCCeEEEeeCCCcEEEEECCCC
Q 021399            8 GHERPLTYLKYNKD-GDLLFSCAKDHTPTVWFADNG-ER-LGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETG   84 (313)
Q Consensus         8 ~h~~~v~~~~fs~~-g~~l~s~s~d~~i~iw~~~~~-~~-~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~v~vWd~~~~   84 (313)
                      ..++.|.+|+|||. ..+++.+|.|++||+|+++.. .. -+....|.++|.+++|+.||..+++|+.|+.+++||+.++
T Consensus        25 pP~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~  104 (347)
T KOG0647|consen   25 PPEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLASG  104 (347)
T ss_pred             CcccchheeEeccccCceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEccCCceEEeeccCCceEEEEccCC
Confidence            35778999999994 456668999999999999873 32 3456679999999999999999999999999999999999


Q ss_pred             eEEEEecCCCCeeEEEeecCCe---EEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEccCCCEE
Q 021399           85 AQLFTFNFDSPARSVDFAVGDK---LAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTI  161 (313)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i  161 (313)
                      +......+..++..+.|.++-.   ++.++.++.+.      .|+.      +...++..+..+ ++++.+..  ....+
T Consensus       105 Q~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlK------fWD~------R~~~pv~t~~LP-eRvYa~Dv--~~pm~  169 (347)
T KOG0647|consen  105 QVSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLK------FWDT------RSSNPVATLQLP-ERVYAADV--LYPMA  169 (347)
T ss_pred             CeeeeeecccceeEEEEecCCCcceeEeccccccee------eccc------CCCCeeeeeecc-ceeeehhc--cCcee
Confidence            8888888899999999887533   33333444332      2222      122333333322 23433322  23467


Q ss_pred             EEeeCCCeEEEEECCCCcee-eecccccCceeceEEEEECCCCCEEEEeeCCCcEEEEECCCCcEEE--EEec-------
Q 021399          162 ISAGEDAIVRIWDTETGKLL-KESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIK--TYVT-------  231 (313)
Q Consensus       162 ~t~~~d~~i~lwd~~~~~~~-~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~--~~~~-------  231 (313)
                      +.+..+..|.+++++.+... ++..  +.-+-.++|++..+|.+..+.|+..|.+-+..++.+.+..  ++..       
T Consensus       170 vVata~r~i~vynL~n~~te~k~~~--SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~~~nFtFkCHR~~~~~  247 (347)
T KOG0647|consen  170 VVATAERHIAVYNLENPPTEFKRIE--SPLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNPKDNFTFKCHRSTNSV  247 (347)
T ss_pred             EEEecCCcEEEEEcCCCcchhhhhc--CcccceeeEEEEEecCCceEeeeecceEEEEecCCCCccCceeEEEeccCCCC
Confidence            88888999999999765432 2222  2346678999999999989999999999999887753221  2221       


Q ss_pred             ---CCceeEEEeccCCCEEEEcccccCceeEeeccCCCceeeeeeehhhhhhhccccccccceeEEEECCCCCeeEEEEE
Q 021399          232 ---ERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKRYGFLLL  308 (313)
Q Consensus       232 ---~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~fspdgk~~~~~~~  308 (313)
                         -..++.++|+|..+.++++|+++              ...|||......+.....|..+|++.+|+.+|++|||-+.
T Consensus       248 ~~~VYaVNsi~FhP~hgtlvTaGsDG--------------tf~FWDkdar~kLk~s~~~~qpItcc~fn~~G~ifaYA~g  313 (347)
T KOG0647|consen  248 NDDVYAVNSIAFHPVHGTLVTAGSDG--------------TFSFWDKDARTKLKTSETHPQPITCCSFNRNGSIFAYALG  313 (347)
T ss_pred             CCceEEecceEeecccceEEEecCCc--------------eEEEecchhhhhhhccCcCCCccceeEecCCCCEEEEEee
Confidence               12578999999888888776643              2468998888888888899999999999999999999764

>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.97  E-value=8.1e-28  Score=212.83  Aligned_cols=293  Identities=20%  Similarity=0.307  Sum_probs=218.8

Q ss_pred             ccccccceeEEEEccCCCEEEEeeCCCCeEEEeCCCCcEEEEecCCCCceEEEEECCCCCeEEEeeCCCcEEEEECCCCe
Q 021399            6 MKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGA   85 (313)
Q Consensus         6 l~~h~~~v~~~~fs~~g~~l~s~s~d~~i~iw~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~v~vWd~~~~~   85 (313)
                      +..|.++|..+.|+|+++.++||+.|..|+||+.++.+++.++.||-+.|..+.|++.--+++|+|.|.||+||+-.+.+
T Consensus        47 FdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~rrclftL~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr~  126 (1202)
T KOG0292|consen   47 FDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTRRCLFTLLGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQSRK  126 (1202)
T ss_pred             hhccCCccceeeecCCCCeEEecCCccEEEEEecccceehhhhccccceeEEeeccCCCceEEEccCCCeEEEEeccCCc
Confidence            56799999999999999999999999999999999999999999999999999999998999999999999999999999


Q ss_pred             EEEEec-CCCCeeEEEeecCCeE-EEEECCCceeccccceeeeeeeCCC---C----------------CCC--ce--EE
Q 021399           86 QLFTFN-FDSPARSVDFAVGDKL-AVITTDPFMELNSAIHVKRIARDPA---D----------------QGG--ES--VL  140 (313)
Q Consensus        86 ~~~~~~-~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~---~----------------~~~--~~--~~  140 (313)
                      ++.++. +.+=+-+..|+|.+.+ +.++-+      ..+++|++.--+.   .                ..+  +.  ..
T Consensus       127 ~iavltGHnHYVMcAqFhptEDlIVSaSLD------QTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~  200 (1202)
T KOG0292|consen  127 CIAVLTGHNHYVMCAQFHPTEDLIVSASLD------QTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKH  200 (1202)
T ss_pred             eEEEEecCceEEEeeccCCccceEEEeccc------ceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeee
Confidence            988775 4555677789985444 443333      3344444321000   0                001  11  24


Q ss_pred             EecCCCCceEEEEEccCCCEEEEeeCCCeEEEEECCCCceeeecccccCceeceEEEEECCCCCEEEEeeCCCcEEEEEC
Q 021399          141 ILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDA  220 (313)
Q Consensus       141 ~~~~~~~~i~~~~~~~~~~~i~t~~~d~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~dg~i~iwd~  220 (313)
                      +++||.-.|+.++|+|.-+.|++|++|..|++|.+...+.. ++....+|...|.++-|+|..+.|+|.|.|++|++||+
T Consensus       201 VLEGHDRGVNwaAfhpTlpliVSG~DDRqVKlWrmnetKaW-EvDtcrgH~nnVssvlfhp~q~lIlSnsEDksirVwDm  279 (1202)
T KOG0292|consen  201 VLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAW-EVDTCRGHYNNVSSVLFHPHQDLILSNSEDKSIRVWDM  279 (1202)
T ss_pred             eecccccccceEEecCCcceEEecCCcceeeEEEeccccce-eehhhhcccCCcceEEecCccceeEecCCCccEEEEec
Confidence            67899999999999999999999999999999998765543 34555689999999999999999999999999999999


Q ss_pred             CCCcEEEEEecCCc-eeEEEeccCCCEEEEcccccCceeEeecc-C------------CCceeeeeeehhhhhhhc--cc
Q 021399          221 RTLELIKTYVTERP-VNAVTMSPLLDHVVLGGGQDASAVTTTDH-R------------AGKFEAKFFDKILQEEIG--GV  284 (313)
Q Consensus       221 ~~~~~~~~~~~~~~-~~~~~~~p~~~~~~~~~~~~~~~~~~~~~-~------------~~~~~~~~~~~~~~~~~~--~~  284 (313)
                      ..-.++.++..+.. --.++-+|..+..+ +|-+.+..+.-.+. |            ...-.++.+|..+.+...  .+
T Consensus       280 ~kRt~v~tfrrendRFW~laahP~lNLfA-AgHDsGm~VFkleRErpa~~v~~n~LfYvkd~~i~~~d~~t~~d~~v~~l  358 (1202)
T KOG0292|consen  280 TKRTSVQTFRRENDRFWILAAHPELNLFA-AGHDSGMIVFKLERERPAYAVNGNGLFYVKDRFIRSYDLRTQKDTAVASL  358 (1202)
T ss_pred             ccccceeeeeccCCeEEEEEecCCcceee-eecCCceEEEEEcccCceEEEcCCEEEEEccceEEeeeccccccceeEec
Confidence            99999999876543 44577899876433 33333332322221 0            012235667765533322  22


Q ss_pred             cc---cccceeEEEECCCCCeeEEE
Q 021399          285 KG---HFGPINALAFNPDGKRYGFL  306 (313)
Q Consensus       285 ~~---h~~~V~~~~fspdgk~~~~~  306 (313)
                      +.   -..++.++.|+|...-+-+|
T Consensus       359 r~~g~~~~~~~smsYNpae~~vlic  383 (1202)
T KOG0292|consen  359 RRPGTLWQPPRSLSYNPAENAVLIC  383 (1202)
T ss_pred             cCCCcccCCcceeeeccccCeEEEE
Confidence            21   13678889999986665544

>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]

Probab=99.97  E-value=1.1e-29  Score=207.04  Aligned_cols=234  Identities=21%  Similarity=0.324  Sum_probs=188.2

Q ss_pred             ccccccccceeEEEEccCCCEEEEeeCCCCeEEEeCCCCcEEEEecC-CCCceEEEEECCCCCeEEEeeCCCcEEEEECC
Q 021399            4 ILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRG-HNGAVWCCDVSRDSMTLITGSADQTAKLWNVE   82 (313)
Q Consensus         4 ~~l~~h~~~v~~~~fs~~g~~l~s~s~d~~i~iw~~~~~~~~~~~~~-H~~~V~~~~~~~~~~~l~s~s~D~~v~vWd~~   82 (313)
                      .+++.|..+|.++.|+++|.+++||+.||.||+|+..-... +.+.+ |..+|.+++|+|+...|+|||.||+|+|||..
T Consensus       132 tilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnmnnV-k~~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~  210 (464)
T KOG0284|consen  132 TILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNMNNV-KIIQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFR  210 (464)
T ss_pred             HHhhhhcccceeEEEccCCCEEEEcCCCceEEecccchhhh-HHhhHhhhhhhheeccCCCCceeEEecCCCeEEEEecc
Confidence            46889999999999999999999999999999998765443 44555 45899999999998999999999999999987


Q ss_pred             CCeEEEEe-cCCCCeeEEEeecCCeEEEEEC-CCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEccCCCE
Q 021399           83 TGAQLFTF-NFDSPARSVDFAVGDKLAVITT-DPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRT  160 (313)
Q Consensus        83 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~  160 (313)
                      ..+....+ .+.-.+.+++|+|...+++..+ +.      .+.+|+      ..++..+..+.+|.+.|..+.|+|++++
T Consensus       211 ~~kee~vL~GHgwdVksvdWHP~kgLiasgskDn------lVKlWD------prSg~cl~tlh~HKntVl~~~f~~n~N~  278 (464)
T KOG0284|consen  211 MPKEERVLRGHGWDVKSVDWHPTKGLIASGSKDN------LVKLWD------PRSGSCLATLHGHKNTVLAVKFNPNGNW  278 (464)
T ss_pred             CCchhheeccCCCCcceeccCCccceeEEccCCc------eeEeec------CCCcchhhhhhhccceEEEEEEcCCCCe
Confidence            76655444 3566889999998655544433 22      222222      2356677788899999999999999999


Q ss_pred             EEEeeCCCeEEEEECCCCceeeecccccCceeceEEEEECC-CCCEEEEeeCCCcEEEEECCCCcEEEEEe--cCCceeE
Q 021399          161 IISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAA-DGSHFLTGSLDKSAKLWDARTLELIKTYV--TERPVNA  237 (313)
Q Consensus       161 i~t~~~d~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~-~~~~l~s~s~dg~i~iwd~~~~~~~~~~~--~~~~~~~  237 (313)
                      ++|+|.|..++++|+++.+.+.++   .+|+..++++.|+| ..+.|.+|+.||.|..|.+...+++..+.  ++..|-+
T Consensus       279 Llt~skD~~~kv~DiR~mkEl~~~---r~Hkkdv~~~~WhP~~~~lftsgg~Dgsvvh~~v~~~~p~~~i~~AHd~~iws  355 (464)
T KOG0284|consen  279 LLTGSKDQSCKVFDIRTMKELFTY---RGHKKDVTSLTWHPLNESLFTSGGSDGSVVHWVVGLEEPLGEIPPAHDGEIWS  355 (464)
T ss_pred             eEEccCCceEEEEehhHhHHHHHh---hcchhhheeeccccccccceeeccCCCceEEEeccccccccCCCcccccceee
Confidence            999999999999999865555444   47999999999999 45678899999999999998777777664  4667999


Q ss_pred             EEeccCCCEEEEccccc
Q 021399          238 VTMSPLLDHVVLGGGQD  254 (313)
Q Consensus       238 ~~~~p~~~~~~~~~~~~  254 (313)
                      ++|+|.|..++. |+.|
T Consensus       356 l~~hPlGhil~t-gsnd  371 (464)
T KOG0284|consen  356 LAYHPLGHILAT-GSND  371 (464)
T ss_pred             eeccccceeEee-cCCC
Confidence            999999876655 4433

>KOG2096 consensus WD40 repeat protein [General function prediction only]

Probab=99.97  E-value=3.7e-28  Score=192.59  Aligned_cols=273  Identities=19%  Similarity=0.273  Sum_probs=184.2

Q ss_pred             cccccccceeEEEEccCCCEEEEeeCCCCeEEEeCCCCcEEEEecCCC--------CceEEEEECCCCC-eEEEeeCCCc
Q 021399            5 LMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHN--------GAVWCCDVSRDSM-TLITGSADQT   75 (313)
Q Consensus         5 ~l~~h~~~v~~~~fs~~g~~l~s~s~d~~i~iw~~~~~~~~~~~~~H~--------~~V~~~~~~~~~~-~l~s~s~D~~   75 (313)
                      +|+||.+.|++++|+.||++|+|++.|+.|+||++++-+.    +.|+        +--+.+.|+||-+ .++++-...+
T Consensus        81 ~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~----~eHr~~R~nve~dhpT~V~FapDc~s~vv~~~~g~~  156 (420)
T KOG2096|consen   81 VLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFEN----KEHRCIRQNVEYDHPTRVVFAPDCKSVVVSVKRGNK  156 (420)
T ss_pred             hhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhh----hhhhHhhccccCCCceEEEECCCcceEEEEEccCCE
Confidence            7999999999999999999999999999999999886422    2221        1236789999866 5566677888


Q ss_pred             EEEEECCC---Ce----EEE--E--e--cCCCCeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEe
Q 021399           76 AKLWNVET---GA----QLF--T--F--NFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLIL  142 (313)
Q Consensus        76 v~vWd~~~---~~----~~~--~--~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  142 (313)
                      +++|-+..   |.    .+.  .  +  .+..++..+-...+.+++.....     ...+-+|++       .++.+..+
T Consensus       157 l~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~-----dt~i~lw~l-------kGq~L~~i  224 (420)
T KOG2096|consen  157 LCVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASL-----DTKICLWDL-------KGQLLQSI  224 (420)
T ss_pred             EEEEEeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecC-----CCcEEEEec-------CCceeeee
Confidence            99997632   21    011  1  1  12223333333344444433221     122222322       13444555


Q ss_pred             cCCCCceEEEEEccCCCEEEEeeCCCeEEEEECC---CC--ceeeecccccCceeceEEEEECCCCCEEEEeeCCCcEEE
Q 021399          143 KGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTE---TG--KLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKL  217 (313)
Q Consensus       143 ~~~~~~i~~~~~~~~~~~i~t~~~d~~i~lwd~~---~~--~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~dg~i~i  217 (313)
                      ...+..-+..+.+|+|+++++++-...+++|++-   .|  +...+.....||+..|+.++|+++...++|.|.||++|+
T Consensus       225 dtnq~~n~~aavSP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG~wri  304 (420)
T KOG2096|consen  225 DTNQSSNYDAAVSPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDGKWRI  304 (420)
T ss_pred             ccccccccceeeCCCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeEEEecCCcEEE
Confidence            5566667788899999999999999999999952   22  234455566799999999999999999999999999999


Q ss_pred             EECCCC-------cEEEEEe---c--CCceeEEEeccCCCEEEEcccccCceeEeeccCCCceeeeeeehhhhhhhcccc
Q 021399          218 WDARTL-------ELIKTYV---T--ERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVK  285 (313)
Q Consensus       218 wd~~~~-------~~~~~~~---~--~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  285 (313)
                      ||.+-.       +.+++..   +  ......++++|.++.++++.|++-..+..-+   ++-    +  ...+     .
T Consensus       305 wdtdVrY~~~qDpk~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s~gs~l~~~~se~---g~~----~--~~~e-----~  370 (420)
T KOG2096|consen  305 WDTDVRYEAGQDPKILKEGSAPLHAAGSEPVRLELSPSGDSLAVSFGSDLKVFASED---GKD----Y--PELE-----D  370 (420)
T ss_pred             eeccceEecCCCchHhhcCCcchhhcCCCceEEEeCCCCcEEEeecCCceEEEEccc---Ccc----c--hhHH-----H
Confidence            997531       1222221   0  1123378999999999998877644333222   221    1  1111     2


Q ss_pred             ccccceeEEEECCCCCeeEEEE
Q 021399          286 GHFGPINALAFNPDGKRYGFLL  307 (313)
Q Consensus       286 ~h~~~V~~~~fspdgk~~~~~~  307 (313)
                      .|.+.|.+|+|+||||++|-|-
T Consensus       371 ~h~~~Is~is~~~~g~~~atcG  392 (420)
T KOG2096|consen  371 IHSTTISSISYSSDGKYIATCG  392 (420)
T ss_pred             hhcCceeeEEecCCCcEEeeec
Confidence            5899999999999999998763

>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.97  E-value=1.3e-28  Score=211.53  Aligned_cols=232  Identities=22%  Similarity=0.310  Sum_probs=200.9

Q ss_pred             ccceeEEEEccCCCEEEEeeCCCCeEEEeCCCCcEEEEecC-CCCceEEEEECCCCCeEEEeeCCCcEEEEECCCCeEEE
Q 021399           10 ERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRG-HNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLF   88 (313)
Q Consensus        10 ~~~v~~~~fs~~g~~l~s~s~d~~i~iw~~~~~~~~~~~~~-H~~~V~~~~~~~~~~~l~s~s~D~~v~vWd~~~~~~~~   88 (313)
                      +..|+++.|+++|.+|+.|-.+|.|.|||.++.+.+.++.+ |...|.+++|+  +..+.+|+.|+.|..+|++..+...
T Consensus       217 ~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~~~~~~~h~~rvg~laW~--~~~lssGsr~~~I~~~dvR~~~~~~  294 (484)
T KOG0305|consen  217 EELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKTRTLRGSHASRVGSLAWN--SSVLSSGSRDGKILNHDVRISQHVV  294 (484)
T ss_pred             CCceEEEEECCCCCEEEEeecCCeEEEEehhhccccccccCCcCceeEEEecc--CceEEEecCCCcEEEEEEecchhhh
Confidence            67899999999999999999999999999999999999999 99999999998  5589999999999999987643210


Q ss_pred             EecCCCCeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEccCCCEEEEeeCCC
Q 021399           89 TFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDA  168 (313)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~t~~~d~  168 (313)
                                                                         ..+.+|...|..+.|++++.++|+|+.|+
T Consensus       295 ---------------------------------------------------~~~~~H~qeVCgLkws~d~~~lASGgnDN  323 (484)
T KOG0305|consen  295 ---------------------------------------------------STLQGHRQEVCGLKWSPDGNQLASGGNDN  323 (484)
T ss_pred             ---------------------------------------------------hhhhcccceeeeeEECCCCCeeccCCCcc
Confidence                                                               01456888999999999999999999999


Q ss_pred             eEEEEECCCCceeeecccccCceeceEEEEECC-CCCEEEEee--CCCcEEEEECCCCcEEEEEecCCceeEEEeccCCC
Q 021399          169 IVRIWDTETGKLLKESDKETGHKKTITSLAKAA-DGSHFLTGS--LDKSAKLWDARTLELIKTYVTERPVNAVTMSPLLD  245 (313)
Q Consensus       169 ~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~-~~~~l~s~s--~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~p~~~  245 (313)
                      .+.|||..+..++..+.   .|...|.+++|+| ....||+|+  .|+.|++||..+++++..+.....|..+.|++...
T Consensus       324 ~~~Iwd~~~~~p~~~~~---~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~vdtgsQVcsL~Wsk~~k  400 (484)
T KOG0305|consen  324 VVFIWDGLSPEPKFTFT---EHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGARIDSVDTGSQVCSLIWSKKYK  400 (484)
T ss_pred             ceEeccCCCccccEEEe---ccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCcEecccccCCceeeEEEcCCCC
Confidence            99999996666655543   6999999999999 455788765  69999999999999999998888999999999999


Q ss_pred             EEEEcccccCceeEeeccCCCceeeeeeehhhhhhhccccccccceeEEEECCCCCeeEEEEEE
Q 021399          246 HVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKRYGFLLLQ  309 (313)
Q Consensus       246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~fspdgk~~~~~~~~  309 (313)
                      -++++.|...+            .+.+|+..+.+.+..+.+|..+|..+++||||..++.-++-
T Consensus       401 Ei~sthG~s~n------------~i~lw~~ps~~~~~~l~gH~~RVl~la~SPdg~~i~t~a~D  452 (484)
T KOG0305|consen  401 ELLSTHGYSEN------------QITLWKYPSMKLVAELLGHTSRVLYLALSPDGETIVTGAAD  452 (484)
T ss_pred             EEEEecCCCCC------------cEEEEeccccceeeeecCCcceeEEEEECCCCCEEEEeccc
Confidence            89988776544            45677777788888999999999999999999998876543

>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.96  E-value=1e-28  Score=190.01  Aligned_cols=222  Identities=19%  Similarity=0.295  Sum_probs=177.6

Q ss_pred             ccceeEEEEccCC-CEEEEeeCCCCeEEEeCCC-CcEEEEecCCCCceEEEEECCC-CCeEEEeeCCCcEEEEECCCCeE
Q 021399           10 ERPLTYLKYNKDG-DLLFSCAKDHTPTVWFADN-GERLGTYRGHNGAVWCCDVSRD-SMTLITGSADQTAKLWNVETGAQ   86 (313)
Q Consensus        10 ~~~v~~~~fs~~g-~~l~s~s~d~~i~iw~~~~-~~~~~~~~~H~~~V~~~~~~~~-~~~l~s~s~D~~v~vWd~~~~~~   86 (313)
                      ++.+..++|+++- +.+++++.||+++|||... ..++..++.|+.+|.++.|++- ++.++++|.|++||+|+...++.
T Consensus        60 ~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~S  139 (311)
T KOG0277|consen   60 EDGLFDVAWSENHENQVIAASGDGSLRLFDLTMPSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNS  139 (311)
T ss_pred             ccceeEeeecCCCcceEEEEecCceEEEeccCCCCcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCcc
Confidence            4567889999874 6888899999999999653 4578899999999999999974 56788889999999999775443


Q ss_pred             EEEecCCCCeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEccC-CCEEEEee
Q 021399           87 LFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPL-NRTIISAG  165 (313)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~i~t~~  165 (313)
                                                                          ++.+.+|...|..+.|+|. .+.+++++
T Consensus       140 ----------------------------------------------------v~Tf~gh~~~Iy~a~~sp~~~nlfas~S  167 (311)
T KOG0277|consen  140 ----------------------------------------------------VQTFNGHNSCIYQAAFSPHIPNLFASAS  167 (311)
T ss_pred             ----------------------------------------------------eEeecCCccEEEEEecCCCCCCeEEEcc
Confidence                                                                3345678888999999986 57899999


Q ss_pred             CCCeEEEEECCCCceeeecccccCceeceEEEEECC-CCCEEEEeeCCCcEEEEECCCC-cEEEEEe-cCCceeEEEecc
Q 021399          166 EDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAA-DGSHFLTGSLDKSAKLWDARTL-ELIKTYV-TERPVNAVTMSP  242 (313)
Q Consensus       166 ~d~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~-~~~~l~s~s~dg~i~iwd~~~~-~~~~~~~-~~~~~~~~~~~p  242 (313)
                      .|+.+++||++.......+   ..|...+.+..|+. +.+.++||+.|+.||.||++.. .++.++. +.-.|+.+.|+|
T Consensus       168 gd~~l~lwdvr~~gk~~~i---~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r~pl~eL~gh~~AVRkvk~Sp  244 (311)
T KOG0277|consen  168 GDGTLRLWDVRSPGKFMSI---EAHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLRTPLFELNGHGLAVRKVKFSP  244 (311)
T ss_pred             CCceEEEEEecCCCceeEE---EeccceeEeecccccCCcEEEecCCCceEEEEehhhccccceeecCCceEEEEEecCc
Confidence            9999999998764332223   35888999999986 6677999999999999999985 4566664 345799999999


Q ss_pred             CCCEEEEcccccCceeEeeccCCCceeeeeeehh-hhhhhccccccccceeEEEECCC
Q 021399          243 LLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKI-LQEEIGGVKGHFGPINALAFNPD  299 (313)
Q Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~h~~~V~~~~fspd  299 (313)
                      ....++++++.|.             ..++||.. ....+.+...|++-|..+.||+-
T Consensus       245 h~~~lLaSasYDm-------------T~riw~~~~~ds~~e~~~~HtEFv~g~Dws~~  289 (311)
T KOG0277|consen  245 HHASLLASASYDM-------------TVRIWDPERQDSAIETVDHHTEFVCGLDWSLF  289 (311)
T ss_pred             chhhHhhhccccc-------------eEEecccccchhhhhhhhccceEEeccccccc
Confidence            9998888877663             45788865 33445566789999999999986

>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]

Probab=99.96  E-value=2.4e-28  Score=196.27  Aligned_cols=240  Identities=23%  Similarity=0.409  Sum_probs=189.6

Q ss_pred             ccccccccceeEEEEccCCCEEEEeeCCCCeEEEeCCCCcEEEEecCCCCceEEEEECCCCCeEEEeeCCCcEEEEECCC
Q 021399            4 ILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVET   83 (313)
Q Consensus         4 ~~l~~h~~~v~~~~fs~~g~~l~s~s~d~~i~iw~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~v~vWd~~~   83 (313)
                      .+|.||-..|..+++|+--++|++++.|+.|+-||++..+.+..+-||-..|.|++.+|.-..++|||+|.++||||+++
T Consensus       187 ltltGhi~~vr~vavS~rHpYlFs~gedk~VKCwDLe~nkvIR~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRt  266 (460)
T KOG0285|consen  187 LTLTGHIETVRGVAVSKRHPYLFSAGEDKQVKCWDLEYNKVIRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRT  266 (460)
T ss_pred             EeecchhheeeeeeecccCceEEEecCCCeeEEEechhhhhHHHhccccceeEEEeccccceeEEecCCcceEEEeeecc
Confidence            37889999999999999999999999999999999999999999999999999999999999999999999999999987


Q ss_pred             CeEEEEecCCCCeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEccCCCEEEE
Q 021399           84 GAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIIS  163 (313)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~t  163 (313)
                      ...                                                    +..+.||.++|.++.+.|....+++
T Consensus       267 r~~----------------------------------------------------V~~l~GH~~~V~~V~~~~~dpqvit  294 (460)
T KOG0285|consen  267 RAS----------------------------------------------------VHVLSGHTNPVASVMCQPTDPQVIT  294 (460)
T ss_pred             cce----------------------------------------------------EEEecCCCCcceeEEeecCCCceEE
Confidence            532                                                    4456789999999999999999999


Q ss_pred             eeCCCeEEEEECCCCceeeecccccCceeceEEEEECCCCCEEEEeeCCCcEEEEECCCCcEEEEEec-CCceeEEEecc
Q 021399          164 AGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVT-ERPVNAVTMSP  242 (313)
Q Consensus       164 ~~~d~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~-~~~~~~~~~~p  242 (313)
                      |+.|++|++||+..++.+.+..   .|+..+++++.+|....+||++.|. |+-|++..++.+..+.. ..-+++++.+.
T Consensus       295 ~S~D~tvrlWDl~agkt~~tlt---~hkksvral~lhP~e~~fASas~dn-ik~w~~p~g~f~~nlsgh~~iintl~~ns  370 (460)
T KOG0285|consen  295 GSHDSTVRLWDLRAGKTMITLT---HHKKSVRALCLHPKENLFASASPDN-IKQWKLPEGEFLQNLSGHNAIINTLSVNS  370 (460)
T ss_pred             ecCCceEEEeeeccCceeEeee---cccceeeEEecCCchhhhhccCCcc-ceeccCCccchhhccccccceeeeeeecc
Confidence            9999999999999998877664   5899999999999999999999885 89999998887777543 44578888776


Q ss_pred             CCCEEEEcccccCceeEeeccCCCceeeeeeehhhhhhhccccccccceeEEEECCCCCeeEEE
Q 021399          243 LLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKRYGFL  306 (313)
Q Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~fspdgk~~~~~  306 (313)
                      ++  ++++|++. +.+..||-+.+..-.+.   .+....+.+. -...|++.+|...|.++--+
T Consensus       371 D~--v~~~G~dn-g~~~fwdwksg~nyQ~~---~t~vqpGSl~-sEagI~as~fDktg~rlit~  427 (460)
T KOG0285|consen  371 DG--VLVSGGDN-GSIMFWDWKSGHNYQRG---QTIVQPGSLE-SEAGIFASCFDKTGSRLITG  427 (460)
T ss_pred             Cc--eEEEcCCc-eEEEEEecCcCcccccc---cccccCCccc-cccceeEEeecccCceEEec
Confidence            54  45555543 33444443332211110   1111111221 24578889998888776443

>PLN00181 protein SPA1-RELATED; Provisional

Probab=99.96  E-value=1.8e-26  Score=219.03  Aligned_cols=281  Identities=14%  Similarity=0.181  Sum_probs=196.9

Q ss_pred             ccccccceeEEEEccCCCEEEEeeCCCCeEEEeCCCC----c----EEEEecCCCCceEEEEECCC-CCeEEEeeCCCcE
Q 021399            6 MKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNG----E----RLGTYRGHNGAVWCCDVSRD-SMTLITGSADQTA   76 (313)
Q Consensus         6 l~~h~~~v~~~~fs~~g~~l~s~s~d~~i~iw~~~~~----~----~~~~~~~H~~~V~~~~~~~~-~~~l~s~s~D~~v   76 (313)
                      +.+|...|.+++|+|+|++|++|+.|+.|+||+....    .    ....+. +...|.+++|++. ++.+++++.||+|
T Consensus       479 ~~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~-~~~~v~~l~~~~~~~~~las~~~Dg~v  557 (793)
T PLN00181        479 LLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELA-SRSKLSGICWNSYIKSQVASSNFEGVV  557 (793)
T ss_pred             ccCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEec-ccCceeeEEeccCCCCEEEEEeCCCeE
Confidence            4568999999999999999999999999999997532    1    122333 3567999999874 6799999999999


Q ss_pred             EEEECCCCeEEEEec-CCCCeeEEEeec-CCe-EEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEE
Q 021399           77 KLWNVETGAQLFTFN-FDSPARSVDFAV-GDK-LAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAV  153 (313)
Q Consensus        77 ~vWd~~~~~~~~~~~-~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~  153 (313)
                      ++||+.+++.+..+. +...+.++.|++ ++. ++.++.+.      .+.+|++..      +..+..+.. ...+.++.
T Consensus       558 ~lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg------~v~iWd~~~------~~~~~~~~~-~~~v~~v~  624 (793)
T PLN00181        558 QVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDG------SVKLWSINQ------GVSIGTIKT-KANICCVQ  624 (793)
T ss_pred             EEEECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCC------EEEEEECCC------CcEEEEEec-CCCeEEEE
Confidence            999999888776664 456788999986 333 44444333      334444321      223344443 35688888


Q ss_pred             Ec-cCCCEEEEeeCCCeEEEEECCCCc-eeeecccccCceeceEEEEECCCCCEEEEeeCCCcEEEEECCCC------cE
Q 021399          154 WG-PLNRTIISAGEDAIVRIWDTETGK-LLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTL------EL  225 (313)
Q Consensus       154 ~~-~~~~~i~t~~~d~~i~lwd~~~~~-~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~dg~i~iwd~~~~------~~  225 (313)
                      |+ +++..+++|+.|+.|++||+++.+ .+..+   .+|...|.++.|. ++.+|++++.|++|++||+++.      .+
T Consensus       625 ~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~---~~h~~~V~~v~f~-~~~~lvs~s~D~~ikiWd~~~~~~~~~~~~  700 (793)
T PLN00181        625 FPSESGRSLAFGSADHKVYYYDLRNPKLPLCTM---IGHSKTVSYVRFV-DSSTLVSSSTDNTLKLWDLSMSISGINETP  700 (793)
T ss_pred             EeCCCCCEEEEEeCCCeEEEEECCCCCccceEe---cCCCCCEEEEEEe-CCCEEEEEECCCEEEEEeCCCCccccCCcc
Confidence            85 568999999999999999998754 23332   3688999999996 7789999999999999999753      45


Q ss_pred             EEEEe-cCCceeEEEeccCCCEEEEcccccCceeEeeccCCCceeeeeeehhhhhhh--ccccccccceeEEEECCCCCe
Q 021399          226 IKTYV-TERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEI--GGVKGHFGPINALAFNPDGKR  302 (313)
Q Consensus       226 ~~~~~-~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~h~~~V~~~~fspdgk~  302 (313)
                      +.++. +...+.+++|+|++..+++++ . ++.+.+|+........ .|.......+  .....|...|.+++|+|+|+.
T Consensus       701 l~~~~gh~~~i~~v~~s~~~~~lasgs-~-D~~v~iw~~~~~~~~~-s~~~~~~~~~~~~~~~~~~~~V~~v~ws~~~~~  777 (793)
T PLN00181        701 LHSFMGHTNVKNFVGLSVSDGYIATGS-E-TNEVFVYHKAFPMPVL-SYKFKTIDPVSGLEVDDASQFISSVCWRGQSST  777 (793)
T ss_pred             eEEEcCCCCCeeEEEEcCCCCEEEEEe-C-CCEEEEEECCCCCceE-EEecccCCcccccccCCCCcEEEEEEEcCCCCe
Confidence            66664 345688999999987655543 3 3446666644322111 1111100011  112356778999999999998


Q ss_pred             eEEEE
Q 021399          303 YGFLL  307 (313)
Q Consensus       303 ~~~~~  307 (313)
                      ++-.-
T Consensus       778 lva~~  782 (793)
T PLN00181        778 LVAAN  782 (793)
T ss_pred             EEEec
Confidence            76543

>KOG0645 consensus WD40 repeat protein [General function prediction only]

Probab=99.96  E-value=5.7e-27  Score=181.91  Aligned_cols=235  Identities=22%  Similarity=0.374  Sum_probs=179.3

Q ss_pred             ccccccccceeEEEEccCCCEEEEeeCCCCeEEEeCCCC--cEEEEecCCCCceEEEEECCCCCeEEEeeCCCcEEEEEC
Q 021399            4 ILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNG--ERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNV   81 (313)
Q Consensus         4 ~~l~~h~~~v~~~~fs~~g~~l~s~s~d~~i~iw~~~~~--~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~v~vWd~   81 (313)
                      ++-.+|+..|..++|+|.|++|+++|.|.++.||.-.++  +++.+++||+.+|.|++|+++|++||||++|+.|=||.+
T Consensus        55 vld~~hkrsVRsvAwsp~g~~La~aSFD~t~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~  134 (312)
T KOG0645|consen   55 VLDDGHKRSVRSVAWSPHGRYLASASFDATVVIWKKEDGEFECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEI  134 (312)
T ss_pred             eccccchheeeeeeecCCCcEEEEeeccceEEEeecCCCceeEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEe
Confidence            344589999999999999999999999999999965555  578899999999999999999999999999999999999


Q ss_pred             CCCe---EEEEe-cCCCCeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEccC
Q 021399           82 ETGA---QLFTF-NFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPL  157 (313)
Q Consensus        82 ~~~~---~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~  157 (313)
                      .++.   +.-.+ .+...+..+.|+|...+++..+     .+..+++++-.   .+..=..+..+.+|.+.+.++.|++.
T Consensus       135 deddEfec~aVL~~HtqDVK~V~WHPt~dlL~S~S-----YDnTIk~~~~~---~dddW~c~~tl~g~~~TVW~~~F~~~  206 (312)
T KOG0645|consen  135 DEDDEFECIAVLQEHTQDVKHVIWHPTEDLLFSCS-----YDNTIKVYRDE---DDDDWECVQTLDGHENTVWSLAFDNI  206 (312)
T ss_pred             cCCCcEEEEeeeccccccccEEEEcCCcceeEEec-----cCCeEEEEeec---CCCCeeEEEEecCccceEEEEEecCC
Confidence            7553   33333 3456788888998655554332     12222222211   12223467788999999999999999


Q ss_pred             CCEEEEeeCCCeEEEEECCCCceeeecccccCceeceEEEEECCCCCEEEEeeCCCcEEEEECCCC--cE----EE--EE
Q 021399          158 NRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTL--EL----IK--TY  229 (313)
Q Consensus       158 ~~~i~t~~~d~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~dg~i~iwd~~~~--~~----~~--~~  229 (313)
                      |.+++++++|++++||-..+.     +  ..-|+..+..++|.  ...|+|++.|+.|+++.-...  ++    +.  ..
T Consensus       207 G~rl~s~sdD~tv~Iw~~~~~-----~--~~~~sr~~Y~v~W~--~~~IaS~ggD~~i~lf~~s~~~d~p~~~l~~~~~~  277 (312)
T KOG0645|consen  207 GSRLVSCSDDGTVSIWRLYTD-----L--SGMHSRALYDVPWD--NGVIASGGGDDAIRLFKESDSPDEPSWNLLAKKEG  277 (312)
T ss_pred             CceEEEecCCcceEeeeeccC-----c--chhcccceEeeeec--ccceEeccCCCEEEEEEecCCCCCchHHHHHhhhc
Confidence            999999999999999986532     1  12377889999998  457999999999999965432  11    11  11


Q ss_pred             ecCCceeEEEeccCCCEEEEcccccC
Q 021399          230 VTERPVNAVTMSPLLDHVVLGGGQDA  255 (313)
Q Consensus       230 ~~~~~~~~~~~~p~~~~~~~~~~~~~  255 (313)
                      .++..||++.|+|.....++++++|+
T Consensus       278 aHe~dVNsV~w~p~~~~~L~s~~DDG  303 (312)
T KOG0645|consen  278 AHEVDVNSVQWNPKVSNRLASGGDDG  303 (312)
T ss_pred             ccccccceEEEcCCCCCceeecCCCc
Confidence            34568999999997677777777764

>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]

Probab=99.96  E-value=8.5e-28  Score=188.95  Aligned_cols=236  Identities=23%  Similarity=0.374  Sum_probs=188.5

Q ss_pred             cccccccceeEEEEccCCCEEEEeeCCCCeEEEeCCCCcEEEEecCCCCceEEEEECCCC-CeEEEeeCCCcEEEEECCC
Q 021399            5 LMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDS-MTLITGSADQTAKLWNVET   83 (313)
Q Consensus         5 ~l~~h~~~v~~~~fs~~g~~l~s~s~d~~i~iw~~~~~~~~~~~~~H~~~V~~~~~~~~~-~~l~s~s~D~~v~vWd~~~   83 (313)
                      ++++|++.|..+.|.+|+..|+|+|.|++++.||.++|+.++.+++|.+-|+++.-+.-| +++.|++.|+++|+||+++
T Consensus        85 ~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~wD~~tG~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~  164 (338)
T KOG0265|consen   85 VLKGHSGAVMELHGMRDGSHILSCGTDKTVRGWDAETGKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRK  164 (338)
T ss_pred             eeccccceeEeeeeccCCCEEEEecCCceEEEEecccceeeehhccccceeeecCccccCCeEEEecCCCceEEEEeecc
Confidence            578999999999999999999999999999999999999999999999999998844334 4788899999999999998


Q ss_pred             CeEEEEecCCCCeeEEEeecC-CeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEccCCCEEE
Q 021399           84 GAQLFTFNFDSPARSVDFAVG-DKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTII  162 (313)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~  162 (313)
                      .+.+.++...-....+.|... +++..+.      .++.+++|++.      .++....+.||...|+.+..+|.+.+++
T Consensus       165 k~~~~t~~~kyqltAv~f~d~s~qv~sgg------Idn~ikvWd~r------~~d~~~~lsGh~DtIt~lsls~~gs~ll  232 (338)
T KOG0265|consen  165 KEAIKTFENKYQLTAVGFKDTSDQVISGG------IDNDIKVWDLR------KNDGLYTLSGHADTITGLSLSRYGSFLL  232 (338)
T ss_pred             cchhhccccceeEEEEEecccccceeecc------ccCceeeeccc------cCcceEEeecccCceeeEEeccCCCccc
Confidence            887777655556667777653 3443332      23344455442      2456778899999999999999999999


Q ss_pred             EeeCCCeEEEEECCCC----ceeeecccccCcee--ceEEEEECCCCCEEEEeeCCCcEEEEECCCCcEEEEEe-cCCce
Q 021399          163 SAGEDAIVRIWDTETG----KLLKESDKETGHKK--TITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYV-TERPV  235 (313)
Q Consensus       163 t~~~d~~i~lwd~~~~----~~~~~~~~~~~h~~--~v~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~-~~~~~  235 (313)
                      +-+-|.++++||++-.    .+++.+.. ..|+.  .....+|+|++..+.+|+.|..+++||..+...+..+. +...|
T Consensus       233 snsMd~tvrvwd~rp~~p~~R~v~if~g-~~hnfeknlL~cswsp~~~~i~ags~dr~vyvwd~~~r~~lyklpGh~gsv  311 (338)
T KOG0265|consen  233 SNSMDNTVRVWDVRPFAPSQRCVKIFQG-HIHNFEKNLLKCSWSPNGTKITAGSADRFVYVWDTTSRRILYKLPGHYGSV  311 (338)
T ss_pred             cccccceEEEEEecccCCCCceEEEeec-chhhhhhhcceeeccCCCCccccccccceEEEeecccccEEEEcCCcceeE
Confidence            9999999999997642    22333322 22443  34567899999999999999999999999888888876 45689


Q ss_pred             eEEEeccCCCEEEEcccc
Q 021399          236 NAVTMSPLLDHVVLGGGQ  253 (313)
Q Consensus       236 ~~~~~~p~~~~~~~~~~~  253 (313)
                      +++.|+|..+.++.++++
T Consensus       312 n~~~Fhp~e~iils~~sd  329 (338)
T KOG0265|consen  312 NEVDFHPTEPIILSCSSD  329 (338)
T ss_pred             EEeeecCCCcEEEEeccC
Confidence            999999999877766543

>KOG0293 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.96  E-value=3.2e-28  Score=198.83  Aligned_cols=238  Identities=20%  Similarity=0.353  Sum_probs=181.2

Q ss_pred             cccccccceeEEEEccCCCEEEEeeCCCCeEEEeCCCCcEEEEec-CCCCceEEEEECCCCCeEEEeeCCCcEEEEECCC
Q 021399            5 LMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYR-GHNGAVWCCDVSRDSMTLITGSADQTAKLWNVET   83 (313)
Q Consensus         5 ~l~~h~~~v~~~~fs~~g~~l~s~s~d~~i~iw~~~~~~~~~~~~-~H~~~V~~~~~~~~~~~l~s~s~D~~v~vWd~~~   83 (313)
                      +|.||.++|..+.||||.++|++|+.|..+++||+.+|.....+. +|..++.+++|.|||..+++|+.|+++..||++.
T Consensus       264 tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~lwDv~tgd~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDg  343 (519)
T KOG0293|consen  264 TLVGHSQPVSYIMWSPDDRYLLACGFDEVLSLWDVDTGDLRHLYPSGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDG  343 (519)
T ss_pred             eeecccCceEEEEECCCCCeEEecCchHheeeccCCcchhhhhcccCcCCCcceeEEccCCceeEecCCCCcEEEecCCc
Confidence            688999999999999999999999999999999999999877664 4678999999999999999999999999999876


Q ss_pred             CeEEEEec--CCCCeeEEEeecCCeEEEE-ECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEccCCCE
Q 021399           84 GAQLFTFN--FDSPARSVDFAVGDKLAVI-TTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRT  160 (313)
Q Consensus        84 ~~~~~~~~--~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~  160 (313)
                      .. .....  -...+..+...++++.++. ..++.+.+...      ..    .   .-..+..-+.+|++.+++.++++
T Consensus       344 n~-~~~W~gvr~~~v~dlait~Dgk~vl~v~~d~~i~l~~~------e~----~---~dr~lise~~~its~~iS~d~k~  409 (519)
T KOG0293|consen  344 NI-LGNWEGVRDPKVHDLAITYDGKYVLLVTVDKKIRLYNR------EA----R---VDRGLISEEQPITSFSISKDGKL  409 (519)
T ss_pred             ch-hhcccccccceeEEEEEcCCCcEEEEEecccceeeech------hh----h---hhhccccccCceeEEEEcCCCcE
Confidence            43 22221  1234666777776655544 33332221111      00    0   00001123468999999999999


Q ss_pred             EEEeeCCCeEEEEECCCCceeeecccccCceeceEEEEECCCCCEEEEeeCCCcEEEEECCCCcEEEEEe-cCCceeEEE
Q 021399          161 IISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYV-TERPVNAVT  239 (313)
Q Consensus       161 i~t~~~d~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~-~~~~~~~~~  239 (313)
                      +++--.+..+++||++..+.+++...+......|.+..--.+..+++|||.|++|+||+.++++++.++. +...+++|+
T Consensus       410 ~LvnL~~qei~LWDl~e~~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sgkll~~LsGHs~~vNcVs  489 (519)
T KOG0293|consen  410 ALVNLQDQEIHLWDLEENKLVRKYFGHKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRISGKLLAVLSGHSKTVNCVS  489 (519)
T ss_pred             EEEEcccCeeEEeecchhhHHHHhhcccccceEEEeccCCCCcceEEecCCCceEEEEEccCCceeEeecCCcceeeEEe
Confidence            9999999999999999877776654322222345554444566899999999999999999999999987 456799999


Q ss_pred             eccCCCEEEEcccccCc
Q 021399          240 MSPLLDHVVLGGGQDAS  256 (313)
Q Consensus       240 ~~p~~~~~~~~~~~~~~  256 (313)
                      |+|....+++++++|+.
T Consensus       490 wNP~~p~m~ASasDDgt  506 (519)
T KOG0293|consen  490 WNPADPEMFASASDDGT  506 (519)
T ss_pred             cCCCCHHHhhccCCCCe
Confidence            99999999998887753

>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.96  E-value=2.9e-28  Score=211.80  Aligned_cols=201  Identities=26%  Similarity=0.409  Sum_probs=171.3

Q ss_pred             ccccccceeEEEEccCC-CEEEEeeCCCCeEEEeCCCCcE---------EEEecCCCCceEEEEECCCCCeEEEeeCCCc
Q 021399            6 MKGHERPLTYLKYNKDG-DLLFSCAKDHTPTVWFADNGER---------LGTYRGHNGAVWCCDVSRDSMTLITGSADQT   75 (313)
Q Consensus         6 l~~h~~~v~~~~fs~~g-~~l~s~s~d~~i~iw~~~~~~~---------~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~   75 (313)
                      -.||+..|.+++++..+ ..|+++|.|.++++|++...+.         ..+..+|.+.|+|++++|+.++++|||+|++
T Consensus       407 ~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDkt  486 (775)
T KOG0319|consen  407 ANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPNDKLIATGSQDKT  486 (775)
T ss_pred             hcccccccceeeecccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEecCCCceEEecccccc
Confidence            35899999999998776 6999999999999999876321         1244689999999999999999999999999


Q ss_pred             EEEEECCCCeEEEEecCCCCeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEc
Q 021399           76 AKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWG  155 (313)
Q Consensus        76 v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~  155 (313)
                      +|||+++...                                                    ...++.||.-.+.++.|+
T Consensus       487 aKiW~le~~~----------------------------------------------------l~~vLsGH~RGvw~V~Fs  514 (775)
T KOG0319|consen  487 AKIWDLEQLR----------------------------------------------------LLGVLSGHTRGVWCVSFS  514 (775)
T ss_pred             eeeecccCce----------------------------------------------------EEEEeeCCccceEEEEec
Confidence            9999987432                                                    233567888899999999


Q ss_pred             cCCCEEEEeeCCCeEEEEECCCCceeeecccccCceeceEEEEECCCCCEEEEeeCCCcEEEEECCCCcEEEEEe-cCCc
Q 021399          156 PLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYV-TERP  234 (313)
Q Consensus       156 ~~~~~i~t~~~d~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~-~~~~  234 (313)
                      |.+..++|+|.|++|+||.+.+..+++++.   ||...|..+.|-.+|+.|+|++.||-+++|++++.+|+.++. +...
T Consensus       515 ~~dq~laT~SgD~TvKIW~is~fSClkT~e---GH~~aVlra~F~~~~~qliS~~adGliKlWnikt~eC~~tlD~H~Dr  591 (775)
T KOG0319|consen  515 KNDQLLATCSGDKTVKIWSISTFSCLKTFE---GHTSAVLRASFIRNGKQLISAGADGLIKLWNIKTNECEMTLDAHNDR  591 (775)
T ss_pred             cccceeEeccCCceEEEEEeccceeeeeec---CccceeEeeeeeeCCcEEEeccCCCcEEEEeccchhhhhhhhhccce
Confidence            999999999999999999999999999885   799999999999999999999999999999999999999986 5667


Q ss_pred             eeEEEeccCCCEEEEcccccCceeEeec
Q 021399          235 VNAVTMSPLLDHVVLGGGQDASAVTTTD  262 (313)
Q Consensus       235 ~~~~~~~p~~~~~~~~~~~~~~~~~~~~  262 (313)
                      +=+++.+|..+.+++++ .|+..+.+.|
T Consensus       592 vWaL~~~~~~~~~~tgg-~Dg~i~~wkD  618 (775)
T KOG0319|consen  592 VWALSVSPLLDMFVTGG-GDGRIIFWKD  618 (775)
T ss_pred             eEEEeecCccceeEecC-CCeEEEEeec
Confidence            88899999998655554 4444333333

>PTZ00421 coronin; Provisional

Probab=99.96  E-value=1.7e-26  Score=204.78  Aligned_cols=238  Identities=20%  Similarity=0.243  Sum_probs=177.1

Q ss_pred             cccceeEEEEccCCCEEEEeeCCCCeEEEeCCCCcEE-------------EEecCCCCceEEEEECC-CCCeEEEeeCCC
Q 021399            9 HERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERL-------------GTYRGHNGAVWCCDVSR-DSMTLITGSADQ   74 (313)
Q Consensus         9 h~~~v~~~~fs~~g~~l~s~s~d~~i~iw~~~~~~~~-------------~~~~~H~~~V~~~~~~~-~~~~l~s~s~D~   74 (313)
                      |-..|....+++|+..+++++.+..+..|+...+..+             ..+.+|.+.|++++|+| ++++|+|||.|+
T Consensus        19 ~~~~i~~~~~~~d~~~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~d~~~LaSgS~Dg   98 (493)
T PTZ00421         19 HFLNVTPSTALWDCSNTIACNDRFIAVPWQQLGSTAVLKHTDYGKLASNPPILLGQEGPIIDVAFNPFDPQKLFTASEDG   98 (493)
T ss_pred             ceeccccccccCCCCCcEeECCceEEEEEecCCceEEeeccccccCCCCCceEeCCCCCEEEEEEcCCCCCEEEEEeCCC
Confidence            4556677778889888899998888888886544332             14679999999999999 788999999999


Q ss_pred             cEEEEECCCCeEEEEecCCCCeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEE
Q 021399           75 TAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVW  154 (313)
Q Consensus        75 ~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~  154 (313)
                      +|++||+.++.....                                             ....+..+.+|...|..+.|
T Consensus        99 tIkIWdi~~~~~~~~---------------------------------------------~~~~l~~L~gH~~~V~~l~f  133 (493)
T PTZ00421         99 TIMGWGIPEEGLTQN---------------------------------------------ISDPIVHLQGHTKKVGIVSF  133 (493)
T ss_pred             EEEEEecCCCccccc---------------------------------------------cCcceEEecCCCCcEEEEEe
Confidence            999999875421100                                             01234456788999999999


Q ss_pred             ccCC-CEEEEeeCCCeEEEEECCCCceeeecccccCceeceEEEEECCCCCEEEEeeCCCcEEEEECCCCcEEEEEecCC
Q 021399          155 GPLN-RTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTER  233 (313)
Q Consensus       155 ~~~~-~~i~t~~~d~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~  233 (313)
                      +|.+ +.+++++.|+.|+|||+.+++.+..+   .+|...|.+++|+|+|+.|++++.|++|++||+++++.+.++....
T Consensus       134 ~P~~~~iLaSgs~DgtVrIWDl~tg~~~~~l---~~h~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~  210 (493)
T PTZ00421        134 HPSAMNVLASAGADMVVNVWDVERGKAVEVI---KCHSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTIVSSVEAHA  210 (493)
T ss_pred             CcCCCCEEEEEeCCCEEEEEECCCCeEEEEE---cCCCCceEEEEEECCCCEEEEecCCCEEEEEECCCCcEEEEEecCC
Confidence            9985 68999999999999999988766554   3688899999999999999999999999999999999888775432


Q ss_pred             --ceeEEEeccCCCEEEEcccc--cCceeEeeccCCCceeeeeeehhhhhhhcccc-ccccceeEEEECCCCCeeEE
Q 021399          234 --PVNAVTMSPLLDHVVLGGGQ--DASAVTTTDHRAGKFEAKFFDKILQEEIGGVK-GHFGPINALAFNPDGKRYGF  305 (313)
Q Consensus       234 --~~~~~~~~p~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~V~~~~fspdgk~~~~  305 (313)
                        ....+.|.|..+.++++|.+  .+..+.+||.|....           ++.... .+...+....|+||++.+..
T Consensus       211 ~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~-----------p~~~~~~d~~~~~~~~~~d~d~~~L~l  276 (493)
T PTZ00421        211 SAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMAS-----------PYSTVDLDQSSALFIPFFDEDTNLLYI  276 (493)
T ss_pred             CCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCC-----------ceeEeccCCCCceEEEEEcCCCCEEEE
Confidence              24467788888877765532  234455555443221           111111 23446677789999987654

>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.96  E-value=2.2e-27  Score=202.97  Aligned_cols=274  Identities=15%  Similarity=0.234  Sum_probs=217.4

Q ss_pred             ccccccccceeEEEEccCCCEEEEeeCCCCeEEEeCCCCcEEEEecCCCCceEEEEECCCCCeEEEeeCCCcEEEEECCC
Q 021399            4 ILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVET   83 (313)
Q Consensus         4 ~~l~~h~~~v~~~~fs~~g~~l~s~s~d~~i~iw~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~v~vWd~~~   83 (313)
                      +.+..|++.|.++.|+|..++++++-.+|.|.||+.++...++.|+-.+-+|.+..|-+..+.+++|+.|..|+|+++.+
T Consensus         7 rk~~~rSdRVKsVd~HPtePw~la~LynG~V~IWnyetqtmVksfeV~~~PvRa~kfiaRknWiv~GsDD~~IrVfnynt   86 (794)
T KOG0276|consen    7 RKFQSRSDRVKSVDFHPTEPWILAALYNGDVQIWNYETQTMVKSFEVSEVPVRAAKFIARKNWIVTGSDDMQIRVFNYNT   86 (794)
T ss_pred             hHhhccCCceeeeecCCCCceEEEeeecCeeEEEecccceeeeeeeecccchhhheeeeccceEEEecCCceEEEEeccc
Confidence            35667899999999999999999999999999999999999999998889999999999899999999999999999999


Q ss_pred             CeEEEEecC-CCCeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEccCC-CEE
Q 021399           84 GAQLFTFNF-DSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLN-RTI  161 (313)
Q Consensus        84 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~i  161 (313)
                      ++.+..+.. ..=++++..+|....++.+++.     ..+.+|+...     .=.....++||...|.+++|+|.+ +.|
T Consensus        87 ~ekV~~FeAH~DyIR~iavHPt~P~vLtsSDD-----m~iKlW~we~-----~wa~~qtfeGH~HyVMqv~fnPkD~ntF  156 (794)
T KOG0276|consen   87 GEKVKTFEAHSDYIRSIAVHPTLPYVLTSSDD-----MTIKLWDWEN-----EWACEQTFEGHEHYVMQVAFNPKDPNTF  156 (794)
T ss_pred             ceeeEEeeccccceeeeeecCCCCeEEecCCc-----cEEEEeeccC-----ceeeeeEEcCcceEEEEEEecCCCccce
Confidence            998888764 4457888888877776666552     2223333221     113456889999999999999875 689


Q ss_pred             EEeeCCCeEEEEECCCCceeeecccccCceeceEEEEECCCC--CEEEEeeCCCcEEEEECCCCcEEEEEe-cCCceeEE
Q 021399          162 ISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADG--SHFLTGSLDKSAKLWDARTLELIKTYV-TERPVNAV  238 (313)
Q Consensus       162 ~t~~~d~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~--~~l~s~s~dg~i~iwd~~~~~~~~~~~-~~~~~~~~  238 (313)
                      ++++-|++|++|.+.+..+..++.   +|...|+++.+-+.|  .+|+||+.|.+|++||..+..|++++. +.+.+.++
T Consensus       157 aS~sLDrTVKVWslgs~~~nfTl~---gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~TLeGHt~Nvs~v  233 (794)
T KOG0276|consen  157 ASASLDRTVKVWSLGSPHPNFTLE---GHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCVQTLEGHTNNVSFV  233 (794)
T ss_pred             eeeeccccEEEEEcCCCCCceeee---ccccCcceEEeccCCCcceEEecCCCceEEEeecchHHHHHHhhcccccceEE
Confidence            999999999999998877766554   899999999997755  589999999999999999999999986 56789999


Q ss_pred             EeccCCCEEEEcccccCceeEeeccCCCceeeeeeehhhhhhhccccccccceeEEEECCCCCeeE
Q 021399          239 TMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKRYG  304 (313)
Q Consensus       239 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~fspdgk~~~  304 (313)
                      +|+|..+.++. |+.|+ .+.+|.            ..+-+....+.--.++||+|+-.++++.++
T Consensus       234 ~fhp~lpiiis-gsEDG-TvriWh------------s~Ty~lE~tLn~gleRvW~I~~~k~~~~i~  285 (794)
T KOG0276|consen  234 FFHPELPIIIS-GSEDG-TVRIWN------------SKTYKLEKTLNYGLERVWCIAAHKGDGKIA  285 (794)
T ss_pred             EecCCCcEEEE-ecCCc-cEEEec------------CcceehhhhhhcCCceEEEEeecCCCCeEE
Confidence            99999886554 45444 344444            333333223332356788888777766643

>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]

Probab=99.96  E-value=2.5e-26  Score=182.07  Aligned_cols=243  Identities=18%  Similarity=0.288  Sum_probs=182.8

Q ss_pred             CCcc-cccccccceeEEEEccCCCEEEEeeCCCCeEEEeCCCCcEEEE--------------------------------
Q 021399            1 MRPI-LMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGT--------------------------------   47 (313)
Q Consensus         1 ~~~~-~l~~h~~~v~~~~fs~~g~~l~s~s~d~~i~iw~~~~~~~~~~--------------------------------   47 (313)
                      |||. .++.-...|.++.|+++|.+|++++.|..++|||..+++++++                                
T Consensus         4 ~~~ak~f~~~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~tIr   83 (311)
T KOG1446|consen    4 FRPAKVFRETNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTHHSNTVIHSSTKEDDTIR   83 (311)
T ss_pred             cccccccccCCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEeecccccccEEEEecCCceEEEccCCCCCceE
Confidence            4454 4455577899999999999999999999999999988765543                                


Q ss_pred             ------------ecCCCCceEEEEECCCCCeEEEeeCCCcEEEEECCCCeEEEEecCCCCeeEEEeecCCeEEEEECCCc
Q 021399           48 ------------YRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPF  115 (313)
Q Consensus        48 ------------~~~H~~~V~~~~~~~~~~~l~s~s~D~~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  115 (313)
                                  |.||...|.+++.+|-++.|+|+|.|++|++||++..++...+.... ...++|.|.+.+.++.....
T Consensus        84 yLsl~dNkylRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~~-~pi~AfDp~GLifA~~~~~~  162 (311)
T KOG1446|consen   84 YLSLHDNKYLRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNLSG-RPIAAFDPEGLIFALANGSE  162 (311)
T ss_pred             EEEeecCceEEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEecCC-CcceeECCCCcEEEEecCCC
Confidence                        46999999999999999999999999999999999877765554332 22345677666655554421


Q ss_pred             eeccccceeeeeeeCCCCCCCceEEEec-CCCCceEEEEEccCCCEEEEeeCCCeEEEEECCCCceeeecccccCceece
Q 021399          116 MELNSAIHVKRIARDPADQGGESVLILK-GPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTI  194 (313)
Q Consensus       116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~i~t~~~d~~i~lwd~~~~~~~~~~~~~~~h~~~v  194 (313)
                           .+.++++...  +.+.-....+. ....+.+.+.|+|+|++|+.+...+.+++.|.-+|..+..+..........
T Consensus       163 -----~IkLyD~Rs~--dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~~~~~~  235 (311)
T KOG1446|consen  163 -----LIKLYDLRSF--DKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKSTFSGYPNAGNLP  235 (311)
T ss_pred             -----eEEEEEeccc--CCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeEeeccCCCCcc
Confidence                 2223322211  11111111111 345677899999999999999999999999999999877775443333334


Q ss_pred             EEEEECCCCCEEEEeeCCCcEEEEECCCCcEEEEEec--CCceeEEEeccCCCEEEEcc
Q 021399          195 TSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVT--ERPVNAVTMSPLLDHVVLGG  251 (313)
Q Consensus       195 ~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~--~~~~~~~~~~p~~~~~~~~~  251 (313)
                      .+.+|+||++++++|+.||+|.+|+++++..+..+..  ..++.++.|+|...+.+.++
T Consensus       236 ~~a~ftPds~Fvl~gs~dg~i~vw~~~tg~~v~~~~~~~~~~~~~~~fnP~~~mf~sa~  294 (311)
T KOG1446|consen  236 LSATFTPDSKFVLSGSDDGTIHVWNLETGKKVAVLRGPNGGPVSCVRFNPRYAMFVSAS  294 (311)
T ss_pred             eeEEECCCCcEEEEecCCCcEEEEEcCCCcEeeEecCCCCCCccccccCCceeeeeecC
Confidence            6778999999999999999999999999999988865  46788899999887766554

>KOG0289 consensus mRNA splicing factor [General function prediction only]

Probab=99.96  E-value=2.8e-27  Score=194.42  Aligned_cols=236  Identities=22%  Similarity=0.328  Sum_probs=194.7

Q ss_pred             cccccccceeEEEEccCCCEEEEeeCCCCeEEEeCCCCcEEEEecCCCCceEEEEECCCCCeEEEeeCCCcEEEEECCCC
Q 021399            5 LMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETG   84 (313)
Q Consensus         5 ~l~~h~~~v~~~~fs~~g~~l~s~s~d~~i~iw~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~v~vWd~~~~   84 (313)
                      +|+||...|..+.|+|+...+++++.|..|+||...+.......+.|+.+|+.+..+|.|++|++++.|++...-|++++
T Consensus       256 ~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s~~~~~~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g  335 (506)
T KOG0289|consen  256 TLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSSEPTSSRPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISSG  335 (506)
T ss_pred             hccCcceEEEEEEeccchhheeecCCcceEEeeccccccCccccccccccceeeeeccCCcEEEEecCCceEEEEEccCC
Confidence            78999999999999999999999999999999999888888888999999999999999999999999999999999887


Q ss_pred             eEEEEecCCCCeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEccCCCEEEEe
Q 021399           85 AQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISA  164 (313)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~t~  164 (313)
                      .+......                                                  +...-.+++.+|+|+|..|.+|
T Consensus       336 ~~lt~vs~--------------------------------------------------~~s~v~~ts~~fHpDgLifgtg  365 (506)
T KOG0289|consen  336 SQLTVVSD--------------------------------------------------ETSDVEYTSAAFHPDGLIFGTG  365 (506)
T ss_pred             cEEEEEee--------------------------------------------------ccccceeEEeeEcCCceEEecc
Confidence            65432210                                                  0011246788999999999999


Q ss_pred             eCCCeEEEEECCCCceeeecccccCceeceEEEEECCCCCEEEEeeCCCcEEEEECCCCcEEEEEecCC--ceeEEEecc
Q 021399          165 GEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTER--PVNAVTMSP  242 (313)
Q Consensus       165 ~~d~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~--~~~~~~~~p  242 (313)
                      ..|+.|++||++++.....+   .+|.+.|.+++|+.+|.+++++..|+.|++||+|..+.+.++..+.  .+++++|.+
T Consensus       366 t~d~~vkiwdlks~~~~a~F---pght~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n~kt~~l~~~~~v~s~~fD~  442 (506)
T KOG0289|consen  366 TPDGVVKIWDLKSQTNVAKF---PGHTGPVKAISFSENGYWLATAADDGSVKLWDLRKLKNFKTIQLDEKKEVNSLSFDQ  442 (506)
T ss_pred             CCCceEEEEEcCCccccccC---CCCCCceeEEEeccCceEEEEEecCCeEEEEEehhhcccceeeccccccceeEEEcC
Confidence            99999999999988766555   4799999999999999999999999999999999999888886543  599999999


Q ss_pred             CCCEEEEcccccCceeEeeccCCCceeeeeeehhhhhhhccccccccceeEEEECCCCCeeEE
Q 021399          243 LLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKRYGF  305 (313)
Q Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~fspdgk~~~~  305 (313)
                      .|.+++++|.  ...++..+...     +-|     +++..+..|++..+.+.|.-+-+.+|-
T Consensus       443 SGt~L~~~g~--~l~Vy~~~k~~-----k~W-----~~~~~~~~~sg~st~v~Fg~~aq~l~s  493 (506)
T KOG0289|consen  443 SGTYLGIAGS--DLQVYICKKKT-----KSW-----TEIKELADHSGLSTGVRFGEHAQYLAS  493 (506)
T ss_pred             CCCeEEeecc--eeEEEEEeccc-----ccc-----eeeehhhhcccccceeeecccceEEee
Confidence            9999888742  23344333222     122     334456678899999999888777654

>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.96  E-value=8.4e-28  Score=205.57  Aligned_cols=192  Identities=19%  Similarity=0.317  Sum_probs=164.3

Q ss_pred             ccccccccceeEEEEccCCCEEEEeeCCCCeEEEeCCCC-cEEEEecCCCCceEEEEECCC-CCeEEEeeCCCcEEEEEC
Q 021399            4 ILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNG-ERLGTYRGHNGAVWCCDVSRD-SMTLITGSADQTAKLWNV   81 (313)
Q Consensus         4 ~~l~~h~~~v~~~~fs~~g~~l~s~s~d~~i~iw~~~~~-~~~~~~~~H~~~V~~~~~~~~-~~~l~s~s~D~~v~vWd~   81 (313)
                      ..+.+|.+.|.|++.+|.-++++|+|.|.+|++||.+.. .+..+|+||+..|.+++|+|. .+.|+||+-|+|||||++
T Consensus        91 ~~FeAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDrTVKVWsl  170 (794)
T KOG0276|consen   91 KTFEAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPKDPNTFASASLDRTVKVWSL  170 (794)
T ss_pred             EEeeccccceeeeeecCCCCeEEecCCccEEEEeeccCceeeeeEEcCcceEEEEEEecCCCccceeeeeccccEEEEEc
Confidence            367899999999999999999999999999999999877 467899999999999999994 579999999999999998


Q ss_pred             CCCeEEEEecCCCCeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEccCC--C
Q 021399           82 ETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLN--R  159 (313)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--~  159 (313)
                      .+..+.                                                    ..+++|...|+++.+-+.|  +
T Consensus       171 gs~~~n----------------------------------------------------fTl~gHekGVN~Vdyy~~gdkp  198 (794)
T KOG0276|consen  171 GSPHPN----------------------------------------------------FTLEGHEKGVNCVDYYTGGDKP  198 (794)
T ss_pred             CCCCCc----------------------------------------------------eeeeccccCcceEEeccCCCcc
Confidence            764332                                                    2345777788888876544  6


Q ss_pred             EEEEeeCCCeEEEEECCCCceeeecccccCceeceEEEEECCCCCEEEEeeCCCcEEEEECCCCcEEEEEe-cCCceeEE
Q 021399          160 TIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYV-TERPVNAV  238 (313)
Q Consensus       160 ~i~t~~~d~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~-~~~~~~~~  238 (313)
                      ++++|++|.+|++||.++..+++++.   ||...|..+.|+|.=..|+|||.||++|||+..|.+...++. .-..+-|+
T Consensus       199 ylIsgaDD~tiKvWDyQtk~CV~TLe---GHt~Nvs~v~fhp~lpiiisgsEDGTvriWhs~Ty~lE~tLn~gleRvW~I  275 (794)
T KOG0276|consen  199 YLISGADDLTIKVWDYQTKSCVQTLE---GHTNNVSFVFFHPELPIIISGSEDGTVRIWNSKTYKLEKTLNYGLERVWCI  275 (794)
T ss_pred             eEEecCCCceEEEeecchHHHHHHhh---cccccceEEEecCCCcEEEEecCCccEEEecCcceehhhhhhcCCceEEEE
Confidence            89999999999999999999887764   899999999999999999999999999999999988777764 33457777


Q ss_pred             EeccCCCEEEEc
Q 021399          239 TMSPLLDHVVLG  250 (313)
Q Consensus       239 ~~~p~~~~~~~~  250 (313)
                      +-.+..+.++++
T Consensus       276 ~~~k~~~~i~vG  287 (794)
T KOG0276|consen  276 AAHKGDGKIAVG  287 (794)
T ss_pred             eecCCCCeEEEe
Confidence            777777665553

>PLN00181 protein SPA1-RELATED; Provisional

Probab=99.96  E-value=4.2e-26  Score=216.52  Aligned_cols=229  Identities=17%  Similarity=0.259  Sum_probs=178.3

Q ss_pred             cccceeEEEEcc-CCCEEEEeeCCCCeEEEeCCCCcEEEEecCCCCceEEEEECC-CCCeEEEeeCCCcEEEEECCCCeE
Q 021399            9 HERPLTYLKYNK-DGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSR-DSMTLITGSADQTAKLWNVETGAQ   86 (313)
Q Consensus         9 h~~~v~~~~fs~-~g~~l~s~s~d~~i~iw~~~~~~~~~~~~~H~~~V~~~~~~~-~~~~l~s~s~D~~v~vWd~~~~~~   86 (313)
                      +...+.+++|++ ++.+|++++.|+.|++||+.+++.+..+.+|.+.|++++|+| ++.+|+||+.|++|++||+.++..
T Consensus       531 ~~~~v~~l~~~~~~~~~las~~~Dg~v~lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~  610 (793)
T PLN00181        531 SRSKLSGICWNSYIKSQVASSNFEGVVQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVS  610 (793)
T ss_pred             ccCceeeEEeccCCCCEEEEEeCCCeEEEEECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcE
Confidence            345788999987 478999999999999999999999999999999999999996 688999999999999999998887


Q ss_pred             EEEecCCCCeeEEEeec-CC-eEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEccCCCEEEEe
Q 021399           87 LFTFNFDSPARSVDFAV-GD-KLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISA  164 (313)
Q Consensus        87 ~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~t~  164 (313)
                      +..+.....+.++.|.+ ++ .++.+..+.      .+.+|++..     .......+.+|...|..+.|. ++..++++
T Consensus       611 ~~~~~~~~~v~~v~~~~~~g~~latgs~dg------~I~iwD~~~-----~~~~~~~~~~h~~~V~~v~f~-~~~~lvs~  678 (793)
T PLN00181        611 IGTIKTKANICCVQFPSESGRSLAFGSADH------KVYYYDLRN-----PKLPLCTMIGHSKTVSYVRFV-DSSTLVSS  678 (793)
T ss_pred             EEEEecCCCeEEEEEeCCCCCEEEEEeCCC------eEEEEECCC-----CCccceEecCCCCCEEEEEEe-CCCEEEEE
Confidence            77666556677777754 33 444443333      333444321     112345567899999999997 57789999


Q ss_pred             eCCCeEEEEECCCC------ceeeecccccCceeceEEEEECCCCCEEEEeeCCCcEEEEECCCCcEEEEEe--------
Q 021399          165 GEDAIVRIWDTETG------KLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYV--------  230 (313)
Q Consensus       165 ~~d~~i~lwd~~~~------~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~--------  230 (313)
                      +.|+.|++||+..+      .++..+   .+|...+.+++|++++.+|++|+.|+.|++|+.....++..+.        
T Consensus       679 s~D~~ikiWd~~~~~~~~~~~~l~~~---~gh~~~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~~~  755 (793)
T PLN00181        679 STDNTLKLWDLSMSISGINETPLHSF---MGHTNVKNFVGLSVSDGYIATGSETNEVFVYHKAFPMPVLSYKFKTIDPVS  755 (793)
T ss_pred             ECCCEEEEEeCCCCccccCCcceEEE---cCCCCCeeEEEEcCCCCEEEEEeCCCEEEEEECCCCCceEEEecccCCccc
Confidence            99999999998743      333333   4788899999999999999999999999999987665443221        


Q ss_pred             ------cCCceeEEEeccCCCEEEEccc
Q 021399          231 ------TERPVNAVTMSPLLDHVVLGGG  252 (313)
Q Consensus       231 ------~~~~~~~~~~~p~~~~~~~~~~  252 (313)
                            ....+.+++|+|++..+++++.
T Consensus       756 ~~~~~~~~~~V~~v~ws~~~~~lva~~~  783 (793)
T PLN00181        756 GLEVDDASQFISSVCWRGQSSTLVAANS  783 (793)
T ss_pred             ccccCCCCcEEEEEEEcCCCCeEEEecC
Confidence                  1235899999999988776654

>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.96  E-value=2e-27  Score=210.38  Aligned_cols=270  Identities=19%  Similarity=0.271  Sum_probs=211.3

Q ss_pred             ccceeEEEEccCCCEEEEeeCCCCeEEEeCCCCcEEEEecCCCCceEEEEECCCCCeEEEeeCCCcEEEEECCCCeEEEE
Q 021399           10 ERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFT   89 (313)
Q Consensus        10 ~~~v~~~~fs~~g~~l~s~s~d~~i~iw~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~v~vWd~~~~~~~~~   89 (313)
                      +..|..++|+|..++++++--.|.|++||..=++++..|.+|+++|..++|+|+..+|+|||.|-+|+||++.+.+++++
T Consensus         9 SsRvKglsFHP~rPwILtslHsG~IQlWDYRM~tli~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~rrclft   88 (1202)
T KOG0292|consen    9 SSRVKGLSFHPKRPWILTSLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTRRCLFT   88 (1202)
T ss_pred             cccccceecCCCCCEEEEeecCceeeeehhhhhhHHhhhhccCCccceeeecCCCCeEEecCCccEEEEEecccceehhh
Confidence            45688999999999999999999999999999999999999999999999999999999999999999999999888776


Q ss_pred             ecC-CCCeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEccCCCEEEEeeCCC
Q 021399           90 FNF-DSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDA  168 (313)
Q Consensus        90 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~t~~~d~  168 (313)
                      +.. -.=++++.|++.--.++..++     +..+++|+..      +...+.++.||.-.|.+.+|+|....++++|-|-
T Consensus        89 L~GHlDYVRt~~FHheyPWIlSASD-----DQTIrIWNwq------sr~~iavltGHnHYVMcAqFhptEDlIVSaSLDQ  157 (1202)
T KOG0292|consen   89 LLGHLDYVRTVFFHHEYPWILSASD-----DQTIRIWNWQ------SRKCIAVLTGHNHYVMCAQFHPTEDLIVSASLDQ  157 (1202)
T ss_pred             hccccceeEEeeccCCCceEEEccC-----CCeEEEEecc------CCceEEEEecCceEEEeeccCCccceEEEecccc
Confidence            542 334566667654433333332     2233444432      3567888999999999999999999999999999


Q ss_pred             eEEEEECCCCce--eee---------------c---------ccccCceeceEEEEECCCCCEEEEeeCCCcEEEEECCC
Q 021399          169 IVRIWDTETGKL--LKE---------------S---------DKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDART  222 (313)
Q Consensus       169 ~i~lwd~~~~~~--~~~---------------~---------~~~~~h~~~v~~~~~s~~~~~l~s~s~dg~i~iwd~~~  222 (313)
                      +||+||+.--+.  ...               +         ....||...|+-++|+|.-..|+||+.|..|++|.+..
T Consensus       158 TVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpliVSG~DDRqVKlWrmne  237 (1202)
T KOG0292|consen  158 TVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNE  237 (1202)
T ss_pred             eEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcceEEecCCcceeeEEEecc
Confidence            999999642100  000               0         01257888999999999999999999999999998765


Q ss_pred             CcEE---EEEecCCceeEEEeccCCCEEEEcccccCceeEeeccCCCceeeeeeehhhhhhhccccccccceeEEEECCC
Q 021399          223 LELI---KTYVTERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPD  299 (313)
Q Consensus       223 ~~~~---~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~fspd  299 (313)
                      .+.-   ....+...+.++-|+|..+.++.. +.|.             .++.||....+.++.+.--+.+-|.++-+|.
T Consensus       238 tKaWEvDtcrgH~nnVssvlfhp~q~lIlSn-sEDk-------------sirVwDm~kRt~v~tfrrendRFW~laahP~  303 (1202)
T KOG0292|consen  238 TKAWEVDTCRGHYNNVSSVLFHPHQDLILSN-SEDK-------------SIRVWDMTKRTSVQTFRRENDRFWILAAHPE  303 (1202)
T ss_pred             ccceeehhhhcccCCcceEEecCccceeEec-CCCc-------------cEEEEecccccceeeeeccCCeEEEEEecCC
Confidence            4322   112345679999999998876654 4443             3678888888888888777788899999998


Q ss_pred             CCeeE
Q 021399          300 GKRYG  304 (313)
Q Consensus       300 gk~~~  304 (313)
                      ...||
T Consensus       304 lNLfA  308 (1202)
T KOG0292|consen  304 LNLFA  308 (1202)
T ss_pred             cceee
Confidence            88765

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=99.96  E-value=1.3e-25  Score=187.42  Aligned_cols=233  Identities=30%  Similarity=0.483  Sum_probs=191.3

Q ss_pred             ccccccccceeEEEEccCCCEEEEeeCCCCeEEEeCCCCcEEEEecCCCCceEEEEECCCCCeEEEeeCCCcEEEEECCC
Q 021399            4 ILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVET   83 (313)
Q Consensus         4 ~~l~~h~~~v~~~~fs~~g~~l~s~s~d~~i~iw~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~v~vWd~~~   83 (313)
                      ..+.+|...+..+.|+|++++|++++.|+.+++|+..+++.+..+..|...|.++.|+++++++++++.|+.+++||+.+
T Consensus        45 ~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~  124 (289)
T cd00200          45 RTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLETGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVET  124 (289)
T ss_pred             EEEecCCcceeEEEECCCCCEEEEEcCCCeEEEEEcCcccceEEEeccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCC
Confidence            35678888999999999999999999999999999999888889999999999999999988898888899999999998


Q ss_pred             CeEEEEec-CCCCeeEEEeecCCeEEEEEC-CCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEccCCCEE
Q 021399           84 GAQLFTFN-FDSPARSVDFAVGDKLAVITT-DPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTI  161 (313)
Q Consensus        84 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i  161 (313)
                      ++....+. ....+..+.+.+...+++... +.      .+.++++.      .......+..|...+..+.|+|+++.+
T Consensus       125 ~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~------~i~i~d~~------~~~~~~~~~~~~~~i~~~~~~~~~~~l  192 (289)
T cd00200         125 GKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDG------TIKLWDLR------TGKCVATLTGHTGEVNSVAFSPDGEKL  192 (289)
T ss_pred             cEEEEEeccCCCcEEEEEEcCcCCEEEEEcCCC------cEEEEEcc------ccccceeEecCccccceEEECCCcCEE
Confidence            77776665 455688888988766666554 32      22333322      123444556777889999999999999


Q ss_pred             EEeeCCCeEEEEECCCCceeeecccccCceeceEEEEECCCCCEEEEeeCCCcEEEEECCCCcEEEEEe-cCCceeEEEe
Q 021399          162 ISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYV-TERPVNAVTM  240 (313)
Q Consensus       162 ~t~~~d~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~-~~~~~~~~~~  240 (313)
                      ++++.|+.|++||+..++.+..+.   .|...+.++++++++.++++++.||.+++||+++++++..+. +...+.+++|
T Consensus       193 ~~~~~~~~i~i~d~~~~~~~~~~~---~~~~~i~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~  269 (289)
T cd00200         193 LSSSSDGTIKLWDLSTGKCLGTLR---GHENGVNSVAFSPDGYLLASGSEDGTIRVWDLRTGECVQTLSGHTNSVTSLAW  269 (289)
T ss_pred             EEecCCCcEEEEECCCCceecchh---hcCCceEEEEEcCCCcEEEEEcCCCcEEEEEcCCceeEEEccccCCcEEEEEE
Confidence            999999999999998877665542   477799999999998889888889999999999988887775 3457999999


Q ss_pred             ccCCCEEEEcc
Q 021399          241 SPLLDHVVLGG  251 (313)
Q Consensus       241 ~p~~~~~~~~~  251 (313)
                      +|++..+++++
T Consensus       270 ~~~~~~l~~~~  280 (289)
T cd00200         270 SPDGKRLASGS  280 (289)
T ss_pred             CCCCCEEEEec
Confidence            99988776654

>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]

Probab=99.95  E-value=3.3e-28  Score=194.97  Aligned_cols=224  Identities=24%  Similarity=0.398  Sum_probs=167.3

Q ss_pred             ccccccccceeEEEEccCCCEEEEeeCCCCeEEEeCCCCcEEEEecCCCCceEEEEECCCCCeEEEeeCCCcEEEEECCC
Q 021399            4 ILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVET   83 (313)
Q Consensus         4 ~~l~~h~~~v~~~~fs~~g~~l~s~s~d~~i~iw~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~v~vWd~~~   83 (313)
                      .+|.||+++|.|+.|.  .+.|+|||.|.+|+|||.++++.++++-+|...|.-+.|+  +.+++|+|.|.++.+||+.+
T Consensus       231 ~~L~GHtGSVLCLqyd--~rviisGSSDsTvrvWDv~tge~l~tlihHceaVLhlrf~--ng~mvtcSkDrsiaVWdm~s  306 (499)
T KOG0281|consen  231 KILTGHTGSVLCLQYD--ERVIVSGSSDSTVRVWDVNTGEPLNTLIHHCEAVLHLRFS--NGYMVTCSKDRSIAVWDMAS  306 (499)
T ss_pred             HhhhcCCCcEEeeecc--ceEEEecCCCceEEEEeccCCchhhHHhhhcceeEEEEEe--CCEEEEecCCceeEEEeccC
Confidence            3689999999999985  5699999999999999999999999999999999999997  44899999999999999976


Q ss_pred             CeEEEE----ecCCCCeeEEEeecCCeEEEE-ECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEccCC
Q 021399           84 GAQLFT----FNFDSPARSVDFAVGDKLAVI-TTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLN  158 (313)
Q Consensus        84 ~~~~~~----~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~  158 (313)
                      ...+..    ..+...+..++|..  +.++. +.+..      +++|++      ...+.+..+.+|+-.|.++++  .+
T Consensus       307 ps~it~rrVLvGHrAaVNvVdfd~--kyIVsASgDRT------ikvW~~------st~efvRtl~gHkRGIAClQY--r~  370 (499)
T KOG0281|consen  307 PTDITLRRVLVGHRAAVNVVDFDD--KYIVSASGDRT------IKVWST------STCEFVRTLNGHKRGIACLQY--RD  370 (499)
T ss_pred             chHHHHHHHHhhhhhheeeecccc--ceEEEecCCce------EEEEec------cceeeehhhhcccccceehhc--cC
Confidence            542211    12334555555543  33333 23322      233332      235567788899988877765  46


Q ss_pred             CEEEEeeCCCeEEEEECCCCceeeecccccCceeceEEEEECCCCCEEEEeeCCCcEEEEECCCCcE---------EEEE
Q 021399          159 RTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLEL---------IKTY  229 (313)
Q Consensus       159 ~~i~t~~~d~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~---------~~~~  229 (313)
                      +++++|+.|.+|++||.+.|.+++.++   ||+.-|+++.|.  .+.|+||..||+|++||+.++..         +..+
T Consensus       371 rlvVSGSSDntIRlwdi~~G~cLRvLe---GHEeLvRciRFd--~krIVSGaYDGkikvWdl~aaldpra~~~~~Cl~~l  445 (499)
T KOG0281|consen  371 RLVVSGSSDNTIRLWDIECGACLRVLE---GHEELVRCIRFD--NKRIVSGAYDGKIKVWDLQAALDPRAPASTLCLRTL  445 (499)
T ss_pred             eEEEecCCCceEEEEeccccHHHHHHh---chHHhhhheeec--CceeeeccccceEEEEecccccCCcccccchHHHhh
Confidence            899999999999999999999987664   899999999985  57899999999999999887542         2222


Q ss_pred             e-cCCceeEEEeccCCCEEEEccccc
Q 021399          230 V-TERPVNAVTMSPLLDHVVLGGGQD  254 (313)
Q Consensus       230 ~-~~~~~~~~~~~p~~~~~~~~~~~~  254 (313)
                      . +.+.+..+.|..  -+++.+.-++
T Consensus       446 v~hsgRVFrLQFD~--fqIvsssHdd  469 (499)
T KOG0281|consen  446 VEHSGRVFRLQFDE--FQIISSSHDD  469 (499)
T ss_pred             hhccceeEEEeecc--eEEEeccCCC
Confidence            2 334567777653  3344443333

>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=99.95  E-value=7.5e-27  Score=211.09  Aligned_cols=250  Identities=23%  Similarity=0.344  Sum_probs=188.0

Q ss_pred             cccccccccceeEEEEccCCCEEEEee--CCCCeEEEeCCC------------CcEEEEecCCCCceEEEEECCCCCeEE
Q 021399            3 PILMKGHERPLTYLKYNKDGDLLFSCA--KDHTPTVWFADN------------GERLGTYRGHNGAVWCCDVSRDSMTLI   68 (313)
Q Consensus         3 ~~~l~~h~~~v~~~~fs~~g~~l~s~s--~d~~i~iw~~~~------------~~~~~~~~~H~~~V~~~~~~~~~~~l~   68 (313)
                      |.-+..+.+.|.++..+|||..++||+  .|+.++||+.+.            .+.+.+...|.+.|.|+.|+|||++||
T Consensus         6 p~wv~H~~~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~~lA   85 (942)
T KOG0973|consen    6 PTWVNHNEKSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGSYLA   85 (942)
T ss_pred             ccccccCCeeEEEEEecCCceeEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCCCeEe
Confidence            445556666789999999999999999  899999997552            234567789999999999999999999


Q ss_pred             EeeCCCcEEEEECCCCeEEEEecCCCCeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCc
Q 021399           69 TGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGR  148 (313)
Q Consensus        69 s~s~D~~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  148 (313)
                      +||.|+.|.||.......-..+                   .++...         .+      ...=..+..+.+|.+.
T Consensus        86 sGSDD~~v~iW~~~~~~~~~~f-------------------gs~g~~---------~~------vE~wk~~~~l~~H~~D  131 (942)
T KOG0973|consen   86 SGSDDRLVMIWERAEIGSGTVF-------------------GSTGGA---------KN------VESWKVVSILRGHDSD  131 (942)
T ss_pred             eccCcceEEEeeecccCCcccc-------------------cccccc---------cc------cceeeEEEEEecCCCc
Confidence            9999999999997641000000                   000000         00      0111356778899999


Q ss_pred             eEEEEEccCCCEEEEeeCCCeEEEEECCCCceeeecccccCceeceEEEEECCCCCEEEEeeCCCcEEEEECCCCcEEEE
Q 021399          149 INRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKT  228 (313)
Q Consensus       149 i~~~~~~~~~~~i~t~~~d~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~  228 (313)
                      |.+++|+|++.++++++.|++|.||+..+.+++..+.   +|...|-.+.|.|-|++|||-+.|++|++|++.+..+...
T Consensus       132 V~Dv~Wsp~~~~lvS~s~DnsViiwn~~tF~~~~vl~---~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~  208 (942)
T KOG0973|consen  132 VLDVNWSPDDSLLVSVSLDNSVIIWNAKTFELLKVLR---GHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKS  208 (942)
T ss_pred             cceeccCCCccEEEEecccceEEEEccccceeeeeee---cccccccceEECCccCeeeeecCCceEEEEEcccceeeEe
Confidence            9999999999999999999999999999887666554   7999999999999999999999999999999777666665


Q ss_pred             Eec-------CCceeEEEeccCCCEEEEcccccCceeEeeccCCCceeeeeeehhhhhhhccccccccceeEEEECCC
Q 021399          229 YVT-------ERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPD  299 (313)
Q Consensus       229 ~~~-------~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~fspd  299 (313)
                      +..       ......++|+|+|+++++.-+....          .--+.+.+..+.+.-..|.||.+++..++|+|-
T Consensus       209 It~pf~~~~~~T~f~RlSWSPDG~~las~nA~n~~----------~~~~~IieR~tWk~~~~LvGH~~p~evvrFnP~  276 (942)
T KOG0973|consen  209 ITKPFEESPLTTFFLRLSWSPDGHHLASPNAVNGG----------KSTIAIIERGTWKVDKDLVGHSAPVEVVRFNPK  276 (942)
T ss_pred             eccchhhCCCcceeeecccCCCcCeecchhhccCC----------cceeEEEecCCceeeeeeecCCCceEEEEeChH
Confidence            532       2236789999999998876433221          111222222222223457899999999999984

>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.95  E-value=1.1e-27  Score=192.84  Aligned_cols=226  Identities=20%  Similarity=0.306  Sum_probs=174.6

Q ss_pred             cccccccceeEEEEccCC-CEEEEeeCCCCeEEEeCCCCcEEEEecCCCCceEEEEECCCCCeEEEeeCCCcEEEEECCC
Q 021399            5 LMKGHERPLTYLKYNKDG-DLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVET   83 (313)
Q Consensus         5 ~l~~h~~~v~~~~fs~~g-~~l~s~s~d~~i~iw~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~v~vWd~~~   83 (313)
                      -|.||.++|+|++=+|+- ..++||+.||.|+|||+...+++.+|++|.+.|..+++..  +.++|+|+|++||.|.++.
T Consensus        61 ~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~~f~AH~G~V~Gi~v~~--~~~~tvgdDKtvK~wk~~~  138 (433)
T KOG0268|consen   61 SLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIRTFKAHEGLVRGICVTQ--TSFFTVGDDKTVKQWKIDG  138 (433)
T ss_pred             hccccccccchhhcCcchhhhhhccccCceEEEEehhhhhhhheeecccCceeeEEecc--cceEEecCCcceeeeeccC
Confidence            368999999999999987 8999999999999999999999999999999999999976  5789999999999999775


Q ss_pred             CeEEEEecCCCCeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEccCCCEEEE
Q 021399           84 GAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIIS  163 (313)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~t  163 (313)
                      . ++.++...                                                     +.+..+..+..+..++|
T Consensus       139 ~-p~~tilg~-----------------------------------------------------s~~~gIdh~~~~~~FaT  164 (433)
T KOG0268|consen  139 P-PLHTILGK-----------------------------------------------------SVYLGIDHHRKNSVFAT  164 (433)
T ss_pred             C-cceeeecc-----------------------------------------------------ccccccccccccccccc
Confidence            2 11111000                                                     00111111222456888


Q ss_pred             eeCCCeEEEEECCCCceeeecccccCceeceEEEEECCCCC-EEEEeeCCCcEEEEECCCCcEEEEEecCCceeEEEecc
Q 021399          164 AGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGS-HFLTGSLDKSAKLWDARTLELIKTYVTERPVNAVTMSP  242 (313)
Q Consensus       164 ~~~d~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~-~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~p  242 (313)
                      ||++  |.|||.+-..+++.+..   .-+.+.++.|+|... .|+++..|+.|.+||+++..++........-|.++|+|
T Consensus       165 cGe~--i~IWD~~R~~Pv~smsw---G~Dti~svkfNpvETsILas~~sDrsIvLyD~R~~~Pl~KVi~~mRTN~IswnP  239 (433)
T KOG0268|consen  165 CGEQ--IDIWDEQRDNPVSSMSW---GADSISSVKFNPVETSILASCASDRSIVLYDLRQASPLKKVILTMRTNTICWNP  239 (433)
T ss_pred             cCce--eeecccccCCccceeec---CCCceeEEecCCCcchheeeeccCCceEEEecccCCccceeeeeccccceecCc
Confidence            8865  89999876667766554   246789999999654 57777799999999999999999887777889999999


Q ss_pred             CCCEEEEcccccCceeEeeccCCCceeeeeeehhhhhhhccccccccceeEEEECCCCCeeE
Q 021399          243 LLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKRYG  304 (313)
Q Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~fspdgk~~~  304 (313)
                       ....++++..| ..+|.+|-|.           ..++++..++|.++|.+++|||.|++|+
T Consensus       240 -eafnF~~a~ED-~nlY~~DmR~-----------l~~p~~v~~dhvsAV~dVdfsptG~Efv  288 (433)
T KOG0268|consen  240 -EAFNFVAANED-HNLYTYDMRN-----------LSRPLNVHKDHVSAVMDVDFSPTGQEFV  288 (433)
T ss_pred             -cccceeecccc-ccceehhhhh-----------hcccchhhcccceeEEEeccCCCcchhc
Confidence             44555555444 4455555432           2456778899999999999999999986

>KOG1407 consensus WD40 repeat protein [Function unknown]

Probab=99.95  E-value=1.4e-25  Score=173.44  Aligned_cols=235  Identities=16%  Similarity=0.212  Sum_probs=189.2

Q ss_pred             ccccccccceeEEEEccC-CCEEEEeeCCCCeEEEeCCCCcEEEEecCCCCceEEEEECCCCCeEEEeeCCCcEEEEECC
Q 021399            4 ILMKGHERPLTYLKYNKD-GDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVE   82 (313)
Q Consensus         4 ~~l~~h~~~v~~~~fs~~-g~~l~s~s~d~~i~iw~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~v~vWd~~   82 (313)
                      ...++|.+.|-.++|+|. .+.+++++.|++|++||...+++..+...-.+.+. +.|+|+|++++.++.|..|-..|.+
T Consensus        58 ~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd~r~~k~~~~i~~~~eni~-i~wsp~g~~~~~~~kdD~it~id~r  136 (313)
T KOG1407|consen   58 LVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWDIRSGKCTARIETKGENIN-ITWSPDGEYIAVGNKDDRITFIDAR  136 (313)
T ss_pred             hcccCCCcchhhheeCCCCCcceEEecCCceEEEEEeccCcEEEEeeccCcceE-EEEcCCCCEEEEecCcccEEEEEec
Confidence            357899999999999875 57999999999999999999999888876555554 7899999999999999999999998


Q ss_pred             CCeEEEEecCCCCeeEEEeecCCeEEEEECC-CceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEccCCCEE
Q 021399           83 TGAQLFTFNFDSPARSVDFAVGDKLAVITTD-PFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTI  161 (313)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i  161 (313)
                      +-+......+..-...+.|...+.+-...+. +.+.+        +. .   ++-+++..++.|.....++.|+|+|++|
T Consensus       137 ~~~~~~~~~~~~e~ne~~w~~~nd~Fflt~GlG~v~I--------Ls-y---psLkpv~si~AH~snCicI~f~p~Gryf  204 (313)
T KOG1407|consen  137 TYKIVNEEQFKFEVNEISWNNSNDLFFLTNGLGCVEI--------LS-Y---PSLKPVQSIKAHPSNCICIEFDPDGRYF  204 (313)
T ss_pred             ccceeehhcccceeeeeeecCCCCEEEEecCCceEEE--------Ee-c---cccccccccccCCcceEEEEECCCCceE
Confidence            8776655555445555556544333332221 22111        11 1   2346788889999999999999999999


Q ss_pred             EEeeCCCeEEEEECCCCceeeecccccCceeceEEEEECCCCCEEEEeeCCCcEEEEECCCCcEEEEEecCCceeEEEec
Q 021399          162 ISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTERPVNAVTMS  241 (313)
Q Consensus       162 ~t~~~d~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~  241 (313)
                      |+|+.|-.+.|||+..--+.+.+.   .+.-.|+.+.|+-||.+||+||.|..|-|=+++||..+.+++.+.+-+.|+|+
T Consensus       205 A~GsADAlvSLWD~~ELiC~R~is---RldwpVRTlSFS~dg~~lASaSEDh~IDIA~vetGd~~~eI~~~~~t~tVAWH  281 (313)
T KOG1407|consen  205 ATGSADALVSLWDVDELICERCIS---RLDWPVRTLSFSHDGRMLASASEDHFIDIAEVETGDRVWEIPCEGPTFTVAWH  281 (313)
T ss_pred             eeccccceeeccChhHhhhheeec---cccCceEEEEeccCcceeeccCccceEEeEecccCCeEEEeeccCCceeEEec
Confidence            999999999999998655555553   47789999999999999999999999999999999999999999999999999


Q ss_pred             cCCCEEEEccccc
Q 021399          242 PLLDHVVLGGGQD  254 (313)
Q Consensus       242 p~~~~~~~~~~~~  254 (313)
                      |....++.++.+.
T Consensus       282 Pk~~LLAyA~ddk  294 (313)
T KOG1407|consen  282 PKRPLLAYACDDK  294 (313)
T ss_pred             CCCceeeEEecCC
Confidence            9988777766543

>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]

Probab=99.95  E-value=8.3e-26  Score=182.91  Aligned_cols=270  Identities=21%  Similarity=0.382  Sum_probs=199.0

Q ss_pred             cccceeEEEEccCCCEEEEeeCCCCeEEEeCCCCcEEEEecCCCCceEEEEECCC---CCeEEEeeCCCcEEEEECCCCe
Q 021399            9 HERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRD---SMTLITGSADQTAKLWNVETGA   85 (313)
Q Consensus         9 h~~~v~~~~fs~~g~~l~s~s~d~~i~iw~~~~~~~~~~~~~H~~~V~~~~~~~~---~~~l~s~s~D~~v~vWd~~~~~   85 (313)
                      |.+=|.++.-.  +++|+||+.||.+++||. .|+.+.++.||.++|.+++|.-.   ...|+++|.|.++++|..+.++
T Consensus       104 hdDWVSsv~~~--~~~IltgsYDg~~riWd~-~Gk~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~  180 (423)
T KOG0313|consen  104 HDDWVSSVKGA--SKWILTGSYDGTSRIWDL-KGKSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVGE  180 (423)
T ss_pred             chhhhhhhccc--CceEEEeecCCeeEEEec-CCceEEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEecCch
Confidence            55556666555  789999999999999995 68888999999999998887432   3369999999999999987765


Q ss_pred             EEEEe-----cCCCCeeEEEeec-CCeEEEEECCCceeccccce-----eee--------eeeCCCCCCCceEEEecCCC
Q 021399           86 QLFTF-----NFDSPARSVDFAV-GDKLAVITTDPFMELNSAIH-----VKR--------IARDPADQGGESVLILKGPQ  146 (313)
Q Consensus        86 ~~~~~-----~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-----~~~--------~~~~~~~~~~~~~~~~~~~~  146 (313)
                      .....     .+..++.++.... +..++.++.+....++....     +..        -.++.......++..+.||.
T Consensus       181 ~~~~~~~~~~GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt  260 (423)
T KOG0313|consen  181 NKVKALKVCRGHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHT  260 (423)
T ss_pred             hhhhHHhHhcccccceeEEEecCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecccc
Confidence            43221     3455667777655 44555555554433333100     000        00111223356778899999


Q ss_pred             CceEEEEEccCCCEEEEeeCCCeEEEEECCCCceeeecccccCceeceEEEEECCCCCEEEEeeCCCcEEEEECCCCc--
Q 021399          147 GRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLE--  224 (313)
Q Consensus       147 ~~i~~~~~~~~~~~i~t~~~d~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~--  224 (313)
                      ++|..+.|++ ...+.+++.|.+|+.||+.++....++.    -+...++++.+|..+.|++|+.|..+++||.+++.  
T Consensus       261 ~~Vs~V~w~d-~~v~yS~SwDHTIk~WDletg~~~~~~~----~~ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~~~gs  335 (423)
T KOG0313|consen  261 EPVSSVVWSD-ATVIYSVSWDHTIKVWDLETGGLKSTLT----TNKSLNCISYSPLSKLLASGSSDRHIRLWDPRTGDGS  335 (423)
T ss_pred             cceeeEEEcC-CCceEeecccceEEEEEeecccceeeee----cCcceeEeecccccceeeecCCCCceeecCCCCCCCc
Confidence            9999999999 5678999999999999999998877654    35678999999999999999999999999999853  


Q ss_pred             EE-EEEe-cCCceeEEEeccCCCEEEEcccccCceeEeeccCCCceeeeeeehhhhh-hhccccccccceeEEEECCC
Q 021399          225 LI-KTYV-TERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQE-EIGGVKGHFGPINALAFNPD  299 (313)
Q Consensus       225 ~~-~~~~-~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~h~~~V~~~~fspd  299 (313)
                      .+ .++. +..-+.++.|+|...+++++++.|..             +++||..+.+ ++-.+.+|...|.++.|+-.
T Consensus       336 ~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t-------------~klWDvRS~k~plydI~~h~DKvl~vdW~~~  400 (423)
T KOG0313|consen  336 VVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNT-------------VKLWDVRSTKAPLYDIAGHNDKVLSVDWNEG  400 (423)
T ss_pred             eeEEeeecchhhhhheecCCCCceEEEEEecCCe-------------EEEEEeccCCCcceeeccCCceEEEEeccCC
Confidence            22 2332 34458889999999999998876642             3556655444 55667899999999999843

>KOG0300 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.95  E-value=2.8e-26  Score=182.06  Aligned_cols=268  Identities=23%  Similarity=0.412  Sum_probs=197.3

Q ss_pred             ccccccccceeEEEEccCCCEEEEeeCCCCeEEEeCCCCcEEEEecCCCCceEEEEECCCCCeEEEeeCCCcEEEEEC--
Q 021399            4 ILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNV--   81 (313)
Q Consensus         4 ~~l~~h~~~v~~~~fs~~g~~l~s~s~d~~i~iw~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~v~vWd~--   81 (313)
                      +.+.||+++|+.++-...-+.+.++|.|.+.+||.++++.++.++.||.++|+++.|++.+.+++|+|.|++..||..  
T Consensus       142 re~~GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg~CL~~Y~GH~GSVNsikfh~s~~L~lTaSGD~taHIW~~av  221 (481)
T KOG0300|consen  142 RELEGHKDGIWHVAADSTQPICGTASADHTARIWSLESGACLATYTGHTGSVNSIKFHNSGLLLLTASGDETAHIWKAAV  221 (481)
T ss_pred             hhhcccccceeeehhhcCCcceeecccccceeEEeeccccceeeecccccceeeEEeccccceEEEccCCcchHHHHHhh
Confidence            367899999999998888889999999999999999999999999999999999999999999999999999999962  


Q ss_pred             ----CCC--------e--EEE------------------------Ee-cCCCCeeEEEeecC-CeEEEEECCCceecccc
Q 021399           82 ----ETG--------A--QLF------------------------TF-NFDSPARSVDFAVG-DKLAVITTDPFMELNSA  121 (313)
Q Consensus        82 ----~~~--------~--~~~------------------------~~-~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~  121 (313)
                          ...        +  ...                        .+ .+...+...+|..+ .+++..+.+.      .
T Consensus       222 ~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~Q~vTaSWDR------T  295 (481)
T KOG0300|consen  222 NWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGGQQMVTASWDR------T  295 (481)
T ss_pred             cCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhcCcceeeeeeccc------c
Confidence                110        0  000                        00 01111112222222 2222222221      1


Q ss_pred             ceeeeeeeCCCCCCCceEEEecCCCCceEEEEEccCCCEEEEeeCCCeEEEEECCCCceeeecccccCceeceEEEEECC
Q 021399          122 IHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAA  201 (313)
Q Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~t~~~d~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~  201 (313)
                      -.+|++      ..++.+..+.||....+-++-+|..+.+++.+.|.+.+|||.+  ..+..+....||...|+++.|..
T Consensus       296 AnlwDV------Etge~v~~LtGHd~ELtHcstHptQrLVvTsSrDtTFRLWDFR--eaI~sV~VFQGHtdtVTS~vF~~  367 (481)
T KOG0300|consen  296 ANLWDV------ETGEVVNILTGHDSELTHCSTHPTQRLVVTSSRDTTFRLWDFR--EAIQSVAVFQGHTDTVTSVVFNT  367 (481)
T ss_pred             ceeeee------ccCceeccccCcchhccccccCCcceEEEEeccCceeEeccch--hhcceeeeecccccceeEEEEec
Confidence            222332      3467788899999999999999999999999999999999987  34555555679999999999987


Q ss_pred             CCCEEEEeeCCCcEEEEECCCC-cEEEEEecCCceeEEEeccCCCEEEEcccccCceeEeeccCCCceeeeeeehhhhhh
Q 021399          202 DGSHFLTGSLDKSAKLWDARTL-ELIKTYVTERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEE  280 (313)
Q Consensus       202 ~~~~l~s~s~dg~i~iwd~~~~-~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  280 (313)
                      + ..+++||.|.+|++||++.. .++.++....+++.++.+..+..+++  ..|...            +++||++-.+.
T Consensus       368 d-d~vVSgSDDrTvKvWdLrNMRsplATIRtdS~~NRvavs~g~~iIAi--PhDNRq------------vRlfDlnG~Rl  432 (481)
T KOG0300|consen  368 D-DRVVSGSDDRTVKVWDLRNMRSPLATIRTDSPANRVAVSKGHPIIAI--PHDNRQ------------VRLFDLNGNRL  432 (481)
T ss_pred             C-CceeecCCCceEEEeeeccccCcceeeecCCccceeEeecCCceEEe--ccCCce------------EEEEecCCCcc
Confidence            6 46999999999999999875 57788888889999998876655544  233333            45555432111


Q ss_pred             ----hccccccccceeEEEECCCC
Q 021399          281 ----IGGVKGHFGPINALAFNPDG  300 (313)
Q Consensus       281 ----~~~~~~h~~~V~~~~fspdg  300 (313)
                          -..-++|..-|.|.+|.-+-
T Consensus       433 aRlPrtsRqgHrRMV~c~AW~eeh  456 (481)
T KOG0300|consen  433 ARLPRTSRQGHRRMVTCCAWLEEH  456 (481)
T ss_pred             ccCCcccccccceeeeeeeccccC
Confidence                11346899999999998664

>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.95  E-value=6.1e-26  Score=189.05  Aligned_cols=195  Identities=27%  Similarity=0.449  Sum_probs=163.1

Q ss_pred             ccccccccceeEEEEccCC-CEEEEeeCCCCeEEEeCCCCcEEEEecCCCCceEEEEECCCC-CeEEEeeCCCcEEEEEC
Q 021399            4 ILMKGHERPLTYLKYNKDG-DLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDS-MTLITGSADQTAKLWNV   81 (313)
Q Consensus         4 ~~l~~h~~~v~~~~fs~~g-~~l~s~s~d~~i~iw~~~~~~~~~~~~~H~~~V~~~~~~~~~-~~l~s~s~D~~v~vWd~   81 (313)
                      +.+.+|+.+|..+.|+|++ ..|++|+.|+.+++||+.+...+..+.+|++.|.|.+|+|.+ ..++|||.||+||+||+
T Consensus       104 R~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~Dt  183 (487)
T KOG0310|consen  104 RQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDT  183 (487)
T ss_pred             HHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEEEEEecCCcceeEeeccccCCCeEEEecCCCceEEEEEe
Confidence            4688999999999999875 577888999999999999999888999999999999999865 48999999999999998


Q ss_pred             CCC-eEEEEecCCCCeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEccCCCE
Q 021399           82 ETG-AQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRT  160 (313)
Q Consensus        82 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~  160 (313)
                      +.. ..+..+                                                     .|..+|-++.+-|.|..
T Consensus       184 R~~~~~v~el-----------------------------------------------------nhg~pVe~vl~lpsgs~  210 (487)
T KOG0310|consen  184 RSLTSRVVEL-----------------------------------------------------NHGCPVESVLALPSGSL  210 (487)
T ss_pred             ccCCceeEEe-----------------------------------------------------cCCCceeeEEEcCCCCE
Confidence            764 222222                                                     24446667777788888


Q ss_pred             EEEeeCCCeEEEEECCCCceeeecccccCceeceEEEEECCCCCEEEEeeCCCcEEEEECCCCcEEEEEecCCceeEEEe
Q 021399          161 IISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTERPVNAVTM  240 (313)
Q Consensus       161 i~t~~~d~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~  240 (313)
                      |++++. ..+++||+.+|..+....  ..|...|+|+++..++..|+||+.|+.+++||+.+.+.+..+..+.++-+++.
T Consensus       211 iasAgG-n~vkVWDl~~G~qll~~~--~~H~KtVTcL~l~s~~~rLlS~sLD~~VKVfd~t~~Kvv~s~~~~~pvLsiav  287 (487)
T KOG0310|consen  211 IASAGG-NSVKVWDLTTGGQLLTSM--FNHNKTVTCLRLASDSTRLLSGSLDRHVKVFDTTNYKVVHSWKYPGPVLSIAV  287 (487)
T ss_pred             EEEcCC-CeEEEEEecCCceehhhh--hcccceEEEEEeecCCceEeecccccceEEEEccceEEEEeeecccceeeEEe
Confidence            999885 579999998665332221  24999999999999999999999999999999999999999999999999999


Q ss_pred             ccCCCEEEEccccc
Q 021399          241 SPLLDHVVLGGGQD  254 (313)
Q Consensus       241 ~p~~~~~~~~~~~~  254 (313)
                      +|+++.+++|.++.
T Consensus       288 s~dd~t~viGmsnG  301 (487)
T KOG0310|consen  288 SPDDQTVVIGMSNG  301 (487)
T ss_pred             cCCCceEEEecccc
Confidence            99888888765544

>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]

Probab=99.95  E-value=9.2e-26  Score=200.57  Aligned_cols=237  Identities=27%  Similarity=0.451  Sum_probs=187.2

Q ss_pred             ccccccceeEEEEccCCCEEEEeeCCCCeEEEeCCCCcEEEEecCCCCceEEEEECCCCCeEEEeeCCCcEEEEECCCCe
Q 021399            6 MKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGA   85 (313)
Q Consensus         6 l~~h~~~v~~~~fs~~g~~l~s~s~d~~i~iw~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~v~vWd~~~~~   85 (313)
                      |.||++.|+++.|..-+.+|++||.|.++++||..++++.+++.+|.+.|.++...+  ..+++||.|.+|++|++++++
T Consensus       245 l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg~C~~~l~gh~stv~~~~~~~--~~~~sgs~D~tVkVW~v~n~~  322 (537)
T KOG0274|consen  245 LVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTGECTHSLQGHTSSVRCLTIDP--FLLVSGSRDNTVKVWDVTNGA  322 (537)
T ss_pred             ccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCCCcEEEEecCCCceEEEEEccC--ceEeeccCCceEEEEeccCcc
Confidence            899999999999988789999999999999999999999999999999999988754  478889999999999999999


Q ss_pred             EEEEec-CCCCeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEccCCCEEEEe
Q 021399           86 QLFTFN-FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISA  164 (313)
Q Consensus        86 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~t~  164 (313)
                      .+..+. +..++.++... ++.++.++.+.      .+.+|++.      .++.+..+.+|..+|.++.+.+. .++++|
T Consensus       323 ~l~l~~~h~~~V~~v~~~-~~~lvsgs~d~------~v~VW~~~------~~~cl~sl~gH~~~V~sl~~~~~-~~~~Sg  388 (537)
T KOG0274|consen  323 CLNLLRGHTGPVNCVQLD-EPLLVSGSYDG------TVKVWDPR------TGKCLKSLSGHTGRVYSLIVDSE-NRLLSG  388 (537)
T ss_pred             eEEEeccccccEEEEEec-CCEEEEEecCc------eEEEEEhh------hceeeeeecCCcceEEEEEecCc-ceEEee
Confidence            988887 77788888776 44555444443      23344433      35678889999999999988775 789999


Q ss_pred             eCCCeEEEEECCCC-ceeeecccccCceeceEEEEECCCCCEEEEeeCCCcEEEEECCCCcEEEEEecC--CceeEEEec
Q 021399          165 GEDAIVRIWDTETG-KLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTE--RPVNAVTMS  241 (313)
Q Consensus       165 ~~d~~i~lwd~~~~-~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~--~~~~~~~~~  241 (313)
                      +.|+.|++||+.+. +++..+.   +|...+..+.+  .+++|++++.|++|++||.+++++++++...  ..+.++++.
T Consensus       389 s~D~~IkvWdl~~~~~c~~tl~---~h~~~v~~l~~--~~~~Lvs~~aD~~Ik~WD~~~~~~~~~~~~~~~~~v~~l~~~  463 (537)
T KOG0274|consen  389 SLDTTIKVWDLRTKRKCIHTLQ---GHTSLVSSLLL--RDNFLVSSSADGTIKLWDAEEGECLRTLEGRHVGGVSALALG  463 (537)
T ss_pred             eeccceEeecCCchhhhhhhhc---CCccccccccc--ccceeEeccccccEEEeecccCceeeeeccCCcccEEEeecC
Confidence            99999999999988 6666553   68888876654  4789999999999999999999999998763  345555544


Q ss_pred             cCCCEEEEcccccCceeEeeccCCCc
Q 021399          242 PLLDHVVLGGGQDASAVTTTDHRAGK  267 (313)
Q Consensus       242 p~~~~~~~~~~~~~~~~~~~~~~~~~  267 (313)
                         +..+++++.+ +.+..||.+.+.
T Consensus       464 ---~~~il~s~~~-~~~~l~dl~~~~  485 (537)
T KOG0274|consen  464 ---KEEILCSSDD-GSVKLWDLRSGT  485 (537)
T ss_pred             ---cceEEEEecC-CeeEEEecccCc
Confidence               3334444433 334444544433

>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]

Probab=99.95  E-value=1.8e-25  Score=198.75  Aligned_cols=257  Identities=26%  Similarity=0.454  Sum_probs=197.4

Q ss_pred             cccc-cccceeEEEEccCCCEEEEeeCCCCeEEEeCCCCcEEEE-ecCCCCceEEEEECCCCCeEEEeeCCCcEEEEECC
Q 021399            5 LMKG-HERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGT-YRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVE   82 (313)
Q Consensus         5 ~l~~-h~~~v~~~~fs~~g~~l~s~s~d~~i~iw~~~~~~~~~~-~~~H~~~V~~~~~~~~~~~l~s~s~D~~v~vWd~~   82 (313)
                      .+.+ |...+.|..|.  +.++++++.|.+|++|+..++..+.+ +.||.+.|+++++...+.++++|+.|.++++||..
T Consensus       202 ~~~~~~~~~~~~~q~~--~~~~~~~s~~~tl~~~~~~~~~~i~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~  279 (537)
T KOG0274|consen  202 VLLGTDDHVVLCLQLH--DGFFKSGSDDSTLHLWDLNNGYLILTRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCS  279 (537)
T ss_pred             eecccCcchhhhheee--cCeEEecCCCceeEEeecccceEEEeeccCCCCCceeEEEecCCCEEEEEecCCcEEeEecC
Confidence            3444 44557888887  66999999999999999999998888 99999999999998767899999999999999999


Q ss_pred             CCeEEEEec-CCCCeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEccCCCEE
Q 021399           83 TGAQLFTFN-FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTI  161 (313)
Q Consensus        83 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i  161 (313)
                      +++++.++. +...+..+...+. ..+.++.      +..+.+|++.      .+..+..+.+|.++|+++..+  +.++
T Consensus       280 sg~C~~~l~gh~stv~~~~~~~~-~~~sgs~------D~tVkVW~v~------n~~~l~l~~~h~~~V~~v~~~--~~~l  344 (537)
T KOG0274|consen  280 TGECTHSLQGHTSSVRCLTIDPF-LLVSGSR------DNTVKVWDVT------NGACLNLLRGHTGPVNCVQLD--EPLL  344 (537)
T ss_pred             CCcEEEEecCCCceEEEEEccCc-eEeeccC------CceEEEEecc------CcceEEEeccccccEEEEEec--CCEE
Confidence            999998886 3444444433221 1111112      2233444443      344566667799999999988  7899


Q ss_pred             EEeeCCCeEEEEECCCCceeeecccccCceeceEEEEECCCCCEEEEeeCCCcEEEEECCCC-cEEEEEecCCceeEEEe
Q 021399          162 ISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTL-ELIKTYVTERPVNAVTM  240 (313)
Q Consensus       162 ~t~~~d~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~dg~i~iwd~~~~-~~~~~~~~~~~~~~~~~  240 (313)
                      ++|+.|++|++||+.+++++..+.   +|...|.++.+.+. +.+++|+.|++|++||++++ +|+.++..+..+. -.+
T Consensus       345 vsgs~d~~v~VW~~~~~~cl~sl~---gH~~~V~sl~~~~~-~~~~Sgs~D~~IkvWdl~~~~~c~~tl~~h~~~v-~~l  419 (537)
T KOG0274|consen  345 VSGSYDGTVKVWDPRTGKCLKSLS---GHTGRVYSLIVDSE-NRLLSGSLDTTIKVWDLRTKRKCIHTLQGHTSLV-SSL  419 (537)
T ss_pred             EEEecCceEEEEEhhhceeeeeec---CCcceEEEEEecCc-ceEEeeeeccceEeecCCchhhhhhhhcCCcccc-ccc
Confidence            999999999999999988887664   79999999988765 89999999999999999999 8988887544322 222


Q ss_pred             ccCCCEEEEcccccCceeEeeccCCCceeeeeeehhhhhhhccccc-cccceeEEEEC
Q 021399          241 SPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKG-HFGPINALAFN  297 (313)
Q Consensus       241 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-h~~~V~~~~fs  297 (313)
                      ...++. ++++..|.             .+++||.+++.++..+.+ |.+.|+++++.
T Consensus       420 ~~~~~~-Lvs~~aD~-------------~Ik~WD~~~~~~~~~~~~~~~~~v~~l~~~  463 (537)
T KOG0274|consen  420 LLRDNF-LVSSSADG-------------TIKLWDAEEGECLRTLEGRHVGGVSALALG  463 (537)
T ss_pred             ccccce-eEeccccc-------------cEEEeecccCceeeeeccCCcccEEEeecC
Confidence            233333 44444443             478899999999999988 78999999987

>KOG0282 consensus mRNA splicing factor [Function unknown]

Probab=99.95  E-value=8.2e-27  Score=193.99  Aligned_cols=240  Identities=17%  Similarity=0.297  Sum_probs=179.5

Q ss_pred             ccccccccceeEEEEccCCCEEEEeeCCCCeEEEeCCCCcEEEEecCCCCceEEEEECCCC-CeEEEeeCCCcEEEEECC
Q 021399            4 ILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDS-MTLITGSADQTAKLWNVE   82 (313)
Q Consensus         4 ~~l~~h~~~v~~~~fs~~g~~l~s~s~d~~i~iw~~~~~~~~~~~~~H~~~V~~~~~~~~~-~~l~s~s~D~~v~vWd~~   82 (313)
                      +++.||.++|..++|+++|..++|+|.|+.+++||+++|+++..|.. ...++|+.|+|++ +.|++|+.|+.|+.||++
T Consensus       252 rtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~lKlwDtETG~~~~~f~~-~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiR  330 (503)
T KOG0282|consen  252 RTFKGHRKPVRDASFNNCGTSFLSASFDRFLKLWDTETGQVLSRFHL-DKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIR  330 (503)
T ss_pred             hhhhcchhhhhhhhccccCCeeeeeecceeeeeeccccceEEEEEec-CCCceeeecCCCCCcEEEEecCCCcEEEEecc
Confidence            57899999999999999999999999999999999999999877753 3456899999998 799999999999999999


Q ss_pred             CCeEEEEec-CCCCeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEccCCCEE
Q 021399           83 TGAQLFTFN-FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTI  161 (313)
Q Consensus        83 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i  161 (313)
                      +++.++.+. .-..+..+.|.+++.--+.+++..     .+.+|+....   ..-..+....  .-...++..+|.++.+
T Consensus       331 s~kvvqeYd~hLg~i~~i~F~~~g~rFissSDdk-----s~riWe~~~~---v~ik~i~~~~--~hsmP~~~~~P~~~~~  400 (503)
T KOG0282|consen  331 SGKVVQEYDRHLGAILDITFVDEGRRFISSSDDK-----SVRIWENRIP---VPIKNIADPE--MHTMPCLTLHPNGKWF  400 (503)
T ss_pred             chHHHHHHHhhhhheeeeEEccCCceEeeeccCc-----cEEEEEcCCC---ccchhhcchh--hccCcceecCCCCCee
Confidence            998765553 345777888887655444444321     1222221110   0000111111  1223467789999999


Q ss_pred             EEeeCCCeEEEEECCCCceeeecccccCce--eceEEEEECCCCCEEEEeeCCCcEEEEECCCCcEEEEEec-CCceeEE
Q 021399          162 ISAGEDAIVRIWDTETGKLLKESDKETGHK--KTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVT-ERPVNAV  238 (313)
Q Consensus       162 ~t~~~d~~i~lwd~~~~~~~~~~~~~~~h~--~~v~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~-~~~~~~~  238 (313)
                      +.-+.|+.|.++.+...-.+.......+|.  +.-+.+.|||||.+|++|+.||.+.+||.++-+.+..+.. .+++..+
T Consensus       401 ~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~fSpDG~~l~SGdsdG~v~~wdwkt~kl~~~lkah~~~ci~v  480 (503)
T KOG0282|consen  401 AAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDFSPDGRTLCSGDSDGKVNFWDWKTTKLVSKLKAHDQPCIGV  480 (503)
T ss_pred             hhhccCceEEEEecccccccCHhhhhcceeccCceeeEEEcCCCCeEEeecCCccEEEeechhhhhhhccccCCcceEEE
Confidence            999999999999865432222212223564  4456789999999999999999999999999999888864 5789999


Q ss_pred             EeccCCCEEEEccccc
Q 021399          239 TMSPLLDHVVLGGGQD  254 (313)
Q Consensus       239 ~~~p~~~~~~~~~~~~  254 (313)
                      .|+|...+.+++++=+
T Consensus       481 ~wHP~e~Skvat~~w~  496 (503)
T KOG0282|consen  481 DWHPVEPSKVATCGWD  496 (503)
T ss_pred             EecCCCcceeEecccC
Confidence            9999999888887643

>PTZ00420 coronin; Provisional

Probab=99.95  E-value=1.3e-24  Score=193.93  Aligned_cols=189  Identities=20%  Similarity=0.249  Sum_probs=144.2

Q ss_pred             eeCCCCeEEEeCCCCcEEEEecCCCCceEEEEECCC-CCeEEEeeCCCcEEEEECCCCeEEEEecCCCCeeEEEeecCCe
Q 021399           28 CAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRD-SMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDK  106 (313)
Q Consensus        28 ~s~d~~i~iw~~~~~~~~~~~~~H~~~V~~~~~~~~-~~~l~s~s~D~~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~  106 (313)
                      |+.++.+++|+......+..+.+|.+.|.+++|+|+ +++|+|||.|++|++||+.++.....                 
T Consensus        50 GG~~gvI~L~~~~r~~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~-----------------  112 (568)
T PTZ00420         50 GGLIGAIRLENQMRKPPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVK-----------------  112 (568)
T ss_pred             CCceeEEEeeecCCCceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCcccc-----------------
Confidence            566889999998877788899999999999999997 78999999999999999875421000                 


Q ss_pred             EEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEccCCCEE-EEeeCCCeEEEEECCCCceeeecc
Q 021399          107 LAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTI-ISAGEDAIVRIWDTETGKLLKESD  185 (313)
Q Consensus       107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i-~t~~~d~~i~lwd~~~~~~~~~~~  185 (313)
                                                 ....++..+.+|...|.++.|+|.+..+ ++++.|+.|+|||+.+++.+..+.
T Consensus       113 ---------------------------~i~~p~~~L~gH~~~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~  165 (568)
T PTZ00420        113 ---------------------------EIKDPQCILKGHKKKISIIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQIN  165 (568)
T ss_pred             ---------------------------ccccceEEeecCCCcEEEEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEe
Confidence                                       0001233456788899999999988754 789999999999999887655442


Q ss_pred             cccCceeceEEEEECCCCCEEEEeeCCCcEEEEECCCCcEEEEEecC-Ccee-----EEEeccCCCEEEEcccccC--ce
Q 021399          186 KETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTE-RPVN-----AVTMSPLLDHVVLGGGQDA--SA  257 (313)
Q Consensus       186 ~~~~h~~~v~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~-~~~~-----~~~~~p~~~~~~~~~~~~~--~~  257 (313)
                          |...|.+++|+++|+.|++++.|++|++||+++++++.++..+ ..+.     ...|+++++.++++|.++.  ..
T Consensus       166 ----~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~i~tl~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~  241 (568)
T PTZ00420        166 ----MPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEIASSFHIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMRE  241 (568)
T ss_pred             ----cCCcEEEEEECCCCCEEEEEecCCEEEEEECCCCcEEEEEecccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccE
Confidence                4567999999999999999999999999999999998887532 2222     2335677777777664432  23


Q ss_pred             eEeeccC
Q 021399          258 VTTTDHR  264 (313)
Q Consensus       258 ~~~~~~~  264 (313)
                      +.+||.+
T Consensus       242 VkLWDlr  248 (568)
T PTZ00420        242 MKLWDLK  248 (568)
T ss_pred             EEEEECC
Confidence            4555544

>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.95  E-value=7.4e-26  Score=187.28  Aligned_cols=234  Identities=23%  Similarity=0.372  Sum_probs=183.4

Q ss_pred             cccccceeEEEEccCCCEEEEeeCCCCeEEEeCCCCcEEEEecCCCCceEEEEECCCCCeEEEeeCCCcEEEEECCCCeE
Q 021399            7 KGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQ   86 (313)
Q Consensus         7 ~~h~~~v~~~~fs~~g~~l~s~s~d~~i~iw~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~v~vWd~~~~~~   86 (313)
                      ++|.+.+.+++.|+||++|++|+.|..|.||+..+.+.++++.+|.+.|.+++|-.....+++++.|++|++|+++....
T Consensus       199 ~~h~keil~~avS~Dgkylatgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s~  278 (479)
T KOG0299|consen  199 KGHVKEILTLAVSSDGKYLATGGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLSY  278 (479)
T ss_pred             ccccceeEEEEEcCCCcEEEecCCCceEEEecCcccchhhcccccccceeeeeeecCccceeeeecCCceEEEehhHhHH
Confidence            38999999999999999999999999999999999999999999999999999987777899999999999999987655


Q ss_pred             EEEe-cCCCCeeEEEeecCCeEEEEE-CCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEccCCCEEEEe
Q 021399           87 LFTF-NFDSPARSVDFAVGDKLAVIT-TDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISA  164 (313)
Q Consensus        87 ~~~~-~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~t~  164 (313)
                      +.++ .++..+..++....+..+.+. .+.      ..++|.+.       .+..+.+.++.+.+-+++|-.+ ..|++|
T Consensus       279 vetlyGHqd~v~~IdaL~reR~vtVGgrDr------T~rlwKi~-------eesqlifrg~~~sidcv~~In~-~HfvsG  344 (479)
T KOG0299|consen  279 VETLYGHQDGVLGIDALSRERCVTVGGRDR------TVRLWKIP-------EESQLIFRGGEGSIDCVAFIND-EHFVSG  344 (479)
T ss_pred             HHHHhCCccceeeechhcccceEEeccccc------eeEEEecc-------ccceeeeeCCCCCeeeEEEecc-cceeec
Confidence            4332 344555555555444444333 332      23344442       2345567788888888888754 569999


Q ss_pred             eCCCeEEEEECCCCceeeecccc---------cCceeceEEEEECCCCCEEEEeeCCCcEEEEECCCC----cEEEEEec
Q 021399          165 GEDAIVRIWDTETGKLLKESDKE---------TGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTL----ELIKTYVT  231 (313)
Q Consensus       165 ~~d~~i~lwd~~~~~~~~~~~~~---------~~h~~~v~~~~~s~~~~~l~s~s~dg~i~iwd~~~~----~~~~~~~~  231 (313)
                      +.+|.|.||++..++++......         ..++.+|++++..|..+.+++|+.+|.||+|-+..+    .++..+..
T Consensus       345 SdnG~IaLWs~~KKkplf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~r~i~~l~~ls~  424 (479)
T KOG0299|consen  345 SDNGSIALWSLLKKKPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGLRAINLLYSLSL  424 (479)
T ss_pred             cCCceEEEeeecccCceeEeeccccccCCccccccccceeeeEecccCceEEecCCCCceEEEEecCCccccceeeeccc
Confidence            99999999999888776543221         112348999999999999999999999999987766    45566666


Q ss_pred             CCceeEEEeccCCCEEEEccccc
Q 021399          232 ERPVNAVTMSPLLDHVVLGGGQD  254 (313)
Q Consensus       232 ~~~~~~~~~~p~~~~~~~~~~~~  254 (313)
                      ..-|+.++|++++..++++.|..
T Consensus       425 ~GfVNsl~f~~sgk~ivagiGkE  447 (479)
T KOG0299|consen  425 VGFVNSLAFSNSGKRIVAGIGKE  447 (479)
T ss_pred             ccEEEEEEEccCCCEEEEecccc
Confidence            77899999999999888876643

>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]

Probab=99.95  E-value=1.2e-25  Score=181.19  Aligned_cols=239  Identities=20%  Similarity=0.253  Sum_probs=165.3

Q ss_pred             cccccccccceeEEEEccCCCEEEEeeCCCCeEEEeCCCCcEEE------------------------------------
Q 021399            3 PILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLG------------------------------------   46 (313)
Q Consensus         3 ~~~l~~h~~~v~~~~fs~~g~~l~s~s~d~~i~iw~~~~~~~~~------------------------------------   46 (313)
                      +-.+.+|+++|.|+.||.||.+||||.-+|.|+||...++....                                    
T Consensus        99 ~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~stg~~~~~~~~e~~dieWl~WHp~a~illAG~~DGsvWmw~ip  178 (399)
T KOG0296|consen   99 AGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKVSTGGEQWKLDQEVEDIEWLKWHPRAHILLAGSTDGSVWMWQIP  178 (399)
T ss_pred             eeEecCCCCceEEEEEccCceEEEecCCCccEEEEEcccCceEEEeecccCceEEEEecccccEEEeecCCCcEEEEECC
Confidence            34789999999999999999999999999999999888765432                                    


Q ss_pred             ------EecCCCCceEEEEECCCCCeEEEeeCCCcEEEEECCCCeEEEEecC--CCCeeEEEeecC-CeEEEEECCCcee
Q 021399           47 ------TYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFNF--DSPARSVDFAVG-DKLAVITTDPFME  117 (313)
Q Consensus        47 ------~~~~H~~~V~~~~~~~~~~~l~s~s~D~~v~vWd~~~~~~~~~~~~--~~~~~~~~~~~~-~~~~~~~~~~~~~  117 (313)
                            .+.||..++++-.|.|+|+.++++..||+|++||+.++++......  ......+.+... ..+.....+....
T Consensus       179 ~~~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~  258 (399)
T KOG0296|consen  179 SQALCKVMSGHNSPCTCGEFIPDGKRILTGYDDGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVAC  258 (399)
T ss_pred             CcceeeEecCCCCCcccccccCCCceEEEEecCceEEEEecCCCceeEEecccccCcCCccccccccceeEeccCCccEE
Confidence                  2458999999999999999999999999999999999998877652  112222322221 1111111111000


Q ss_pred             c--cccceeeeeeeCCCCCCCceEEEecCCCC---ceEEEEEccCCCEEEEeeCCCeEEEEECCCCceeeecccccCcee
Q 021399          118 L--NSAIHVKRIARDPADQGGESVLILKGPQG---RINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKK  192 (313)
Q Consensus       118 ~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~i~~~~~~~~~~~i~t~~~d~~i~lwd~~~~~~~~~~~~~~~h~~  192 (313)
                      .  .....+......   ....   ....+..   .|-.+.++..=+..|+|+-||+|.|||+...++ +..   -.|..
T Consensus       259 ~~~~~sgKVv~~~n~---~~~~---l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~-R~~---c~he~  328 (399)
T KOG0296|consen  259 GVNNGSGKVVNCNNG---TVPE---LKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAASTL-RHI---CEHED  328 (399)
T ss_pred             EEccccceEEEecCC---CCcc---ccccchhhhhhhhhcccccccchhhcccccceEEEEecccchh-hee---ccCCC
Confidence            0  000011000000   0000   0001112   223334444456789999999999999876543 222   24888


Q ss_pred             ceEEEEECCCCCEEEEeeCCCcEEEEECCCCcEEEEEec-CCceeEEEeccCCCEEEEccc
Q 021399          193 TITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVT-ERPVNAVTMSPLLDHVVLGGG  252 (313)
Q Consensus       193 ~v~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~-~~~~~~~~~~p~~~~~~~~~~  252 (313)
                      .|..+.|-+ ..+|++++.||.|+.||.|+|++..++.. ...|.+.+++|+.+.+++++.
T Consensus       329 ~V~~l~w~~-t~~l~t~c~~g~v~~wDaRtG~l~~~y~GH~~~Il~f~ls~~~~~vvT~s~  388 (399)
T KOG0296|consen  329 GVTKLKWLN-TDYLLTACANGKVRQWDARTGQLKFTYTGHQMGILDFALSPQKRLVVTVSD  388 (399)
T ss_pred             ceEEEEEcC-cchheeeccCceEEeeeccccceEEEEecCchheeEEEEcCCCcEEEEecC
Confidence            899999998 78999999999999999999999999974 567999999998887766543

>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.95  E-value=2.6e-26  Score=191.19  Aligned_cols=231  Identities=19%  Similarity=0.331  Sum_probs=184.3

Q ss_pred             cccccccccceeEEEEccCCCEEEEeeCCCCeEEEeCCCCcEEEEecCCCCceEEEEECCCCCeEEEeeCCCcEEEEECC
Q 021399            3 PILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVE   82 (313)
Q Consensus         3 ~~~l~~h~~~v~~~~fs~~g~~l~s~s~d~~i~iw~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~v~vWd~~   82 (313)
                      |.+.+.|. +|.+++|+|.-++=+.....-.+.||+..+....+++.-...-|.+++|..||++|+.|+..|.|+|+|+.
T Consensus        20 ~~~~ke~~-~vssl~fsp~~P~d~aVt~S~rvqly~~~~~~~~k~~srFk~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k   98 (487)
T KOG0310|consen   20 PPVHKEHN-SVSSLCFSPKHPYDFAVTSSVRVQLYSSVTRSVRKTFSRFKDVVYSVDFRSDGRLLAAGDESGHVKVFDMK   98 (487)
T ss_pred             cccccccC-cceeEecCCCCCCceEEecccEEEEEecchhhhhhhHHhhccceeEEEeecCCeEEEccCCcCcEEEeccc
Confidence            44455554 69999999976533333333688999998888888888889999999999999999999999999999955


Q ss_pred             CCeEEEEecCCCCeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEccCCC-EE
Q 021399           83 TGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNR-TI  161 (313)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~i  161 (313)
                      +..                                                    .+..+.+|+.+++...|+|.++ .+
T Consensus        99 ~r~----------------------------------------------------iLR~~~ah~apv~~~~f~~~d~t~l  126 (487)
T KOG0310|consen   99 SRV----------------------------------------------------ILRQLYAHQAPVHVTKFSPQDNTML  126 (487)
T ss_pred             cHH----------------------------------------------------HHHHHhhccCceeEEEecccCCeEE
Confidence            421                                                    1123456888889999998765 56


Q ss_pred             EEeeCCCeEEEEECCCCceeeecccccCceeceEEEEECCCCC-EEEEeeCCCcEEEEECCCC-cEEEEEecCCceeEEE
Q 021399          162 ISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGS-HFLTGSLDKSAKLWDARTL-ELIKTYVTERPVNAVT  239 (313)
Q Consensus       162 ~t~~~d~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~-~l~s~s~dg~i~iwd~~~~-~~~~~~~~~~~~~~~~  239 (313)
                      ++|++|+.+++||+.+... +  ....+|.+.|++.+++|... .++|||.||+||+||+++. ..+.++.++.++..+.
T Consensus       127 ~s~sDd~v~k~~d~s~a~v-~--~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~elnhg~pVe~vl  203 (487)
T KOG0310|consen  127 VSGSDDKVVKYWDLSTAYV-Q--AELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSRVVELNHGCPVESVL  203 (487)
T ss_pred             EecCCCceEEEEEcCCcEE-E--EEecCCcceeEeeccccCCCeEEEecCCCceEEEEEeccCCceeEEecCCCceeeEE
Confidence            7788899999999987663 2  23458999999999998654 7999999999999999987 8889999999999999


Q ss_pred             eccCCCEEEEcccccCceeEeeccCCCceeeeeeehhhh-hhhccccccccceeEEEECCCCCeeE
Q 021399          240 MSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQ-EEIGGVKGHFGPINALAFNPDGKRYG  304 (313)
Q Consensus       240 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~h~~~V~~~~fspdgk~~~  304 (313)
                      +-|.+..++.+||+               +++.||..++ +.+..+..|...|+|+.+..|+.++-
T Consensus       204 ~lpsgs~iasAgGn---------------~vkVWDl~~G~qll~~~~~H~KtVTcL~l~s~~~rLl  254 (487)
T KOG0310|consen  204 ALPSGSLIASAGGN---------------SVKVWDLTTGGQLLTSMFNHNKTVTCLRLASDSTRLL  254 (487)
T ss_pred             EcCCCCEEEEcCCC---------------eEEEEEecCCceehhhhhcccceEEEEEeecCCceEe
Confidence            99999998888764               3577887643 44455555999999999999997753

>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]

Probab=99.95  E-value=1.6e-26  Score=177.61  Aligned_cols=203  Identities=19%  Similarity=0.340  Sum_probs=166.9

Q ss_pred             cccccceeEEEEccCCCEEEEeeCCCCeEEEeCCCCc-EEEEecCCCCceEEEEECCCCCeEEEeeCCCcEEEEECCCCe
Q 021399            7 KGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGE-RLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGA   85 (313)
Q Consensus         7 ~~h~~~v~~~~fs~~g~~l~s~s~d~~i~iw~~~~~~-~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~v~vWd~~~~~   85 (313)
                      ..|+.-|..++|+.|.++|++|+.++.+||+|++..+ +...+.+|.+.|..+-|....+.++|++.|++||+||.+++.
T Consensus        97 f~hkhivk~~af~~ds~~lltgg~ekllrvfdln~p~App~E~~ghtg~Ir~v~wc~eD~~iLSSadd~tVRLWD~rTgt  176 (334)
T KOG0278|consen   97 FEHKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPKAPPKEISGHTGGIRTVLWCHEDKCILSSADDKTVRLWDHRTGT  176 (334)
T ss_pred             hhhhheeeeEEecccchhhhccchHHHhhhhhccCCCCCchhhcCCCCcceeEEEeccCceEEeeccCCceEEEEeccCc
Confidence            4588889999999999999999999999999998664 577899999999999998888889999999999999999999


Q ss_pred             EEEEecCCCCeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEccCCCEEEEee
Q 021399           86 QLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAG  165 (313)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~t~~  165 (313)
                      .++.+.+.+++.++.+++++.++...-......+....            -..+...+. .-.|.+..++|....++.|+
T Consensus       177 ~v~sL~~~s~VtSlEvs~dG~ilTia~gssV~Fwdaks------------f~~lKs~k~-P~nV~SASL~P~k~~fVaGg  243 (334)
T KOG0278|consen  177 EVQSLEFNSPVTSLEVSQDGRILTIAYGSSVKFWDAKS------------FGLLKSYKM-PCNVESASLHPKKEFFVAGG  243 (334)
T ss_pred             EEEEEecCCCCcceeeccCCCEEEEecCceeEEecccc------------ccceeeccC-ccccccccccCCCceEEecC
Confidence            99999999999999999988777654332222211111            111222221 22567888999999999999


Q ss_pred             CCCeEEEEECCCCceeeecccccCceeceEEEEECCCCCEEEEeeCCCcEEEEECCCCc
Q 021399          166 EDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLE  224 (313)
Q Consensus       166 ~d~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~  224 (313)
                      +|..++.||..++..+-..  ..+|-+.|.|+.|+|+|...++||.||+|++|....++
T Consensus       244 ed~~~~kfDy~TgeEi~~~--nkgh~gpVhcVrFSPdGE~yAsGSEDGTirlWQt~~~~  300 (334)
T KOG0278|consen  244 EDFKVYKFDYNTGEEIGSY--NKGHFGPVHCVRFSPDGELYASGSEDGTIRLWQTTPGK  300 (334)
T ss_pred             cceEEEEEeccCCceeeec--ccCCCCceEEEEECCCCceeeccCCCceEEEEEecCCC
Confidence            9999999999999876543  35799999999999999999999999999999876544

>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]

Probab=99.95  E-value=5.5e-26  Score=190.54  Aligned_cols=251  Identities=19%  Similarity=0.221  Sum_probs=184.2

Q ss_pred             CcccccccccceeEEEEccCCCEEEEeeCCCCeEEEeCCCC---------------------------cEEE--------
Q 021399            2 RPILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNG---------------------------ERLG--------   46 (313)
Q Consensus         2 ~~~~l~~h~~~v~~~~fs~~g~~l~s~s~d~~i~iw~~~~~---------------------------~~~~--------   46 (313)
                      +++.|++|++.|.++++.|.|.+|+|||.|.+|++||+..-                           ..+-        
T Consensus       159 hEi~l~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg~aqa  238 (641)
T KOG0772|consen  159 HEIQLKHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVSGSAQA  238 (641)
T ss_pred             ceEeccCCceEEEEeeecCCCceeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEecCcce
Confidence            56889999999999999999999999999999999997631                           0000        


Q ss_pred             ------------------------EecCCCCceEEEEECCCC-CeEEEeeCCCcEEEEECCCCe-EEEEec------CCC
Q 021399           47 ------------------------TYRGHNGAVWCCDVSRDS-MTLITGSADQTAKLWNVETGA-QLFTFN------FDS   94 (313)
Q Consensus        47 ------------------------~~~~H~~~V~~~~~~~~~-~~l~s~s~D~~v~vWd~~~~~-~~~~~~------~~~   94 (313)
                                              .-+||...++|.+|+|++ +.|+|++.||++|+||+...+ +..++.      ...
T Consensus       239 kl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~Rv  318 (641)
T KOG0772|consen  239 KLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGKRV  318 (641)
T ss_pred             eEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccCCCccc
Confidence                                    015899999999999976 589999999999999997543 233332      234


Q ss_pred             CeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCC--ceEEEEEccCCCEEEEeeCCCeEEE
Q 021399           95 PARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQG--RINRAVWGPLNRTIISAGEDAIVRI  172 (313)
Q Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~i~~~~~~~~~~~i~t~~~d~~i~l  172 (313)
                      ++.++.|.++.+.++..+.     ++.++.|+....   .......+-..|..  .|.++.|+++|++|++-|.|+++++
T Consensus       319 ~~tsC~~nrdg~~iAagc~-----DGSIQ~W~~~~~---~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKv  390 (641)
T KOG0772|consen  319 PVTSCAWNRDGKLIAAGCL-----DGSIQIWDKGSR---TVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKV  390 (641)
T ss_pred             CceeeecCCCcchhhhccc-----CCceeeeecCCc---ccccceEeeeccCCCCceeEEEeccccchhhhccCCCceee
Confidence            6778889988777555432     334444443110   01112233456766  8999999999999999999999999


Q ss_pred             EECCCCc-eeeecccccCceeceEEEEECCCCCEEEEeeC------CCcEEEEECCCCcEEEEEec-CCceeEEEeccCC
Q 021399          173 WDTETGK-LLKESDKETGHKKTITSLAKAADGSHFLTGSL------DKSAKLWDARTLELIKTYVT-ERPVNAVTMSPLL  244 (313)
Q Consensus       173 wd~~~~~-~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~------dg~i~iwd~~~~~~~~~~~~-~~~~~~~~~~p~~  244 (313)
                      ||+++.+ ++...... .-...-+.++|||+.+.|++|..      -|++.+||..+...+.++.. ...+..+.|||-.
T Consensus       391 WDLrq~kkpL~~~tgL-~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ki~i~~aSvv~~~WhpkL  469 (641)
T KOG0772|consen  391 WDLRQFKKPLNVRTGL-PTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLDTVYKIDISTASVVRCLWHPKL  469 (641)
T ss_pred             eeccccccchhhhcCC-CccCCCCccccCCCceEEEecccccCCCCCceEEEEeccceeeEEEecCCCceEEEEeecchh
Confidence            9997654 33322211 12345677899999999999864      47899999999998888753 5568889999999


Q ss_pred             CEEEEcccccCceeEeec
Q 021399          245 DHVVLGGGQDASAVTTTD  262 (313)
Q Consensus       245 ~~~~~~~~~~~~~~~~~~  262 (313)
                      ++++++.|++. ....+|
T Consensus       470 NQi~~gsgdG~-~~vyYd  486 (641)
T KOG0772|consen  470 NQIFAGSGDGT-AHVYYD  486 (641)
T ss_pred             hheeeecCCCc-eEEEEC
Confidence            99998877644 333344

>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.94  E-value=1.2e-25  Score=195.98  Aligned_cols=242  Identities=25%  Similarity=0.370  Sum_probs=192.4

Q ss_pred             ccccccccceeEEEEccCCCEEEEeeCCCCeEEEeCCCCcEEEEe-----------------------------------
Q 021399            4 ILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTY-----------------------------------   48 (313)
Q Consensus         4 ~~l~~h~~~v~~~~fs~~g~~l~s~s~d~~i~iw~~~~~~~~~~~-----------------------------------   48 (313)
                      +.+.||...|..++||.+...++||+. +.++||+.++.+++.++                                   
T Consensus       367 i~~~GHR~dVRsl~vS~d~~~~~Sga~-~SikiWn~~t~kciRTi~~~y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~~  445 (888)
T KOG0306|consen  367 IEIGGHRSDVRSLCVSSDSILLASGAG-ESIKIWNRDTLKCIRTITCGYILASKFVPGDRYIVLGTKNGELQVFDLASAS  445 (888)
T ss_pred             eeeccchhheeEEEeecCceeeeecCC-CcEEEEEccCcceeEEeccccEEEEEecCCCceEEEeccCCceEEEEeehhh
Confidence            577889999999999988888887764 68899998877665543                                   


Q ss_pred             -----cCCCCceEEEEECCCCCeEEEeeCCCcEEEEECCC-----CeE--------EEEecCCCCeeEEEeecCCeEEEE
Q 021399           49 -----RGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVET-----GAQ--------LFTFNFDSPARSVDFAVGDKLAVI  110 (313)
Q Consensus        49 -----~~H~~~V~~~~~~~~~~~l~s~s~D~~v~vWd~~~-----~~~--------~~~~~~~~~~~~~~~~~~~~~~~~  110 (313)
                           ++|++++|+++.+||++.++|||.|.+|++||..-     +..        ..++.....+.++.++|+++++++
T Consensus       446 l~Eti~AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Spdgk~LaV  525 (888)
T KOG0306|consen  446 LVETIRAHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSPDGKLLAV  525 (888)
T ss_pred             hhhhhhccccceeeeeecCCCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEcCCCcEEEE
Confidence                 58999999999999999999999999999999632     111        133456678889999999888776


Q ss_pred             ECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEccCCCEEEEeeCCCeEEEEECCCCceeeecccccCc
Q 021399          111 TTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGH  190 (313)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~t~~~d~~i~lwd~~~~~~~~~~~~~~~h  190 (313)
                      +-     ++....+..+.      +-..-+.+-||.=+|.++.++|+++.++|||.|..|++|-+.-|.+-+.+.   +|
T Consensus       526 sL-----LdnTVkVyflD------tlKFflsLYGHkLPV~smDIS~DSklivTgSADKnVKiWGLdFGDCHKS~f---AH  591 (888)
T KOG0306|consen  526 SL-----LDNTVKVYFLD------TLKFFLSLYGHKLPVLSMDISPDSKLIVTGSADKNVKIWGLDFGDCHKSFF---AH  591 (888)
T ss_pred             Ee-----ccCeEEEEEec------ceeeeeeecccccceeEEeccCCcCeEEeccCCCceEEeccccchhhhhhh---cc
Confidence            42     22222222111      123345677999999999999999999999999999999999988766554   79


Q ss_pred             eeceEEEEECCCCCEEEEeeCCCcEEEEECCCCcEEEEEe-cCCceeEEEeccCCCEEEEcccccCceeEeec
Q 021399          191 KKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYV-TERPVNAVTMSPLLDHVVLGGGQDASAVTTTD  262 (313)
Q Consensus       191 ~~~v~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~-~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~  262 (313)
                      .+.|+++.|-|+..++.++|.|+.|+-||.+..++++.+. +...+.|++..|.|+.++.++.+  ..+..|.
T Consensus       592 dDSvm~V~F~P~~~~FFt~gKD~kvKqWDg~kFe~iq~L~~H~~ev~cLav~~~G~~vvs~shD--~sIRlwE  662 (888)
T KOG0306|consen  592 DDSVMSVQFLPKTHLFFTCGKDGKVKQWDGEKFEEIQKLDGHHSEVWCLAVSPNGSFVVSSSHD--KSIRLWE  662 (888)
T ss_pred             cCceeEEEEcccceeEEEecCcceEEeechhhhhhheeeccchheeeeeEEcCCCCeEEeccCC--ceeEeee
Confidence            9999999999999999999999999999999999999986 45679999999999988766432  3344444

>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]

Probab=99.94  E-value=3e-26  Score=187.22  Aligned_cols=235  Identities=25%  Similarity=0.318  Sum_probs=182.1

Q ss_pred             ccccccccceeEEEEccCCCEEEEeeCCCCeEEEeCCCCcEEEEecCCCCceEEEEECCCCCeEEEeeCCCcEEEEECCC
Q 021399            4 ILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVET   83 (313)
Q Consensus         4 ~~l~~h~~~v~~~~fs~~g~~l~s~s~d~~i~iw~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~v~vWd~~~   83 (313)
                      -+|.|..++|+.+.|.++++++++++.|+.+++|+.+..+...+|.||.+.|+++.|......+++|+.|.+||+||+..
T Consensus       213 ~tLaGs~g~it~~d~d~~~~~~iAas~d~~~r~Wnvd~~r~~~TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k  292 (459)
T KOG0288|consen  213 STLAGSLGNITSIDFDSDNKHVIAASNDKNLRLWNVDSLRLRHTLSGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQK  292 (459)
T ss_pred             hhhhccCCCcceeeecCCCceEEeecCCCceeeeeccchhhhhhhcccccceeeehhhccccceeeccccchhhhhhhhh
Confidence            36788889999999999999999999999999999999999999999999999999987766699999999999999987


Q ss_pred             CeEEEEecCCCCeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEccCCCEEEE
Q 021399           84 GAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIIS  163 (313)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~t  163 (313)
                      ..+..+..+..                                                     .++.++.+  ...+++
T Consensus       293 ~~C~kt~l~~S-----------------------------------------------------~cnDI~~~--~~~~~S  317 (459)
T KOG0288|consen  293 AYCSKTVLPGS-----------------------------------------------------QCNDIVCS--ISDVIS  317 (459)
T ss_pred             hheeccccccc-----------------------------------------------------cccceEec--ceeeee
Confidence            65543322111                                                     11111111  124788


Q ss_pred             eeCCCeEEEEECCCCceeeecccccCceeceEEEEECCCCCEEEEeeCCCcEEEEECCCCcEEEEEec-----CCceeEE
Q 021399          164 AGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVT-----ERPVNAV  238 (313)
Q Consensus       164 ~~~d~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~-----~~~~~~~  238 (313)
                      |-.|++||.||.++..+.+.+.    -.+.|+++..+++|..+.+++.|.++.+.|+++.+....+..     ....+.+
T Consensus       318 gH~DkkvRfwD~Rs~~~~~sv~----~gg~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~sA~g~k~asDwtrv  393 (459)
T KOG0288|consen  318 GHFDKKVRFWDIRSADKTRSVP----LGGRVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTFSAEGFKCASDWTRV  393 (459)
T ss_pred             cccccceEEEeccCCceeeEee----cCcceeeEeeccCCeEEeeecCCCceeeeecccccEEEEeecccccccccccee
Confidence            8899999999999888776654    235899999999999999999999999999999988877753     3357889


Q ss_pred             EeccCCCEEEEcccccCceeEeeccCCCceeeeeeehhhhhhhccccccccceeEEEECCCCCeeEEEEEE
Q 021399          239 TMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKRYGFLLLQ  309 (313)
Q Consensus       239 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~fspdgk~~~~~~~~  309 (313)
                      .|+|++.++++|+.+  +.+++|+..+++.+..+          ...+-..+|++++|+|-|+.+.-..-+
T Consensus       394 vfSpd~~YvaAGS~d--gsv~iW~v~tgKlE~~l----------~~s~s~~aI~s~~W~~sG~~Llsadk~  452 (459)
T KOG0288|consen  394 VFSPDGSYVAAGSAD--GSVYIWSVFTGKLEKVL----------SLSTSNAAITSLSWNPSGSGLLSADKQ  452 (459)
T ss_pred             EECCCCceeeeccCC--CcEEEEEccCceEEEEe----------ccCCCCcceEEEEEcCCCchhhcccCC
Confidence            999999987765443  34556665555554332          112222379999999999987655433

>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]

Probab=99.94  E-value=1.7e-25  Score=181.16  Aligned_cols=193  Identities=26%  Similarity=0.428  Sum_probs=153.5

Q ss_pred             cccccceeEEEEccCCCEEEEeeCCCCeEEEeCCC-------------------------CcEEEEecCCCCceEEEEEC
Q 021399            7 KGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADN-------------------------GERLGTYRGHNGAVWCCDVS   61 (313)
Q Consensus         7 ~~h~~~v~~~~fs~~g~~l~s~s~d~~i~iw~~~~-------------------------~~~~~~~~~H~~~V~~~~~~   61 (313)
                      +||+.+|.+++..++|.+++|||.|..++||+.+.                         ..++-++.||+.+|.++-|+
T Consensus       190 ~GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~  269 (423)
T KOG0313|consen  190 RGHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWS  269 (423)
T ss_pred             cccccceeEEEecCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecccccceeeEEEc
Confidence            49999999999999999999999999999998321                         12355788999999999999


Q ss_pred             CCCCeEEEeeCCCcEEEEECCCCeEEEEecCCCCeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEE
Q 021399           62 RDSMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLI  141 (313)
Q Consensus        62 ~~~~~l~s~s~D~~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  141 (313)
                      + ...++|+|+|.+|+.||++++..+..+..                                                 
T Consensus       270 d-~~v~yS~SwDHTIk~WDletg~~~~~~~~-------------------------------------------------  299 (423)
T KOG0313|consen  270 D-ATVIYSVSWDHTIKVWDLETGGLKSTLTT-------------------------------------------------  299 (423)
T ss_pred             C-CCceEeecccceEEEEEeecccceeeeec-------------------------------------------------
Confidence            7 66899999999999999998865433211                                                 


Q ss_pred             ecCCCCceEEEEEccCCCEEEEeeCCCeEEEEECCCCceeeecccccCceeceEEEEECCCCC-EEEEeeCCCcEEEEEC
Q 021399          142 LKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGS-HFLTGSLDKSAKLWDA  220 (313)
Q Consensus       142 ~~~~~~~i~~~~~~~~~~~i~t~~~d~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~-~l~s~s~dg~i~iwd~  220 (313)
                          ...++++..+|..+++++|+.|..|+|||++++.--.......+|+..|.++.|+|... .|+||+.|+++++||+
T Consensus       300 ----~ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~~~gs~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDv  375 (423)
T KOG0313|consen  300 ----NKSLNCISYSPLSKLLASGSSDRHIRLWDPRTGDGSVVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDV  375 (423)
T ss_pred             ----CcceeEeecccccceeeecCCCCceeecCCCCCCCceeEEeeecchhhhhheecCCCCceEEEEEecCCeEEEEEe
Confidence                12345666777788999999999999999987643222233468999999999999655 5899999999999999


Q ss_pred             CCCc-EEEEEe-cCCceeEEEeccCCCEEEEcccccC
Q 021399          221 RTLE-LIKTYV-TERPVNAVTMSPLLDHVVLGGGQDA  255 (313)
Q Consensus       221 ~~~~-~~~~~~-~~~~~~~~~~~p~~~~~~~~~~~~~  255 (313)
                      |+.+ ++..+. +...+.++.|+...  .+++||.|.
T Consensus       376 RS~k~plydI~~h~DKvl~vdW~~~~--~IvSGGaD~  410 (423)
T KOG0313|consen  376 RSTKAPLYDIAGHNDKVLSVDWNEGG--LIVSGGADN  410 (423)
T ss_pred             ccCCCcceeeccCCceEEEEeccCCc--eEEeccCcc
Confidence            9876 888886 46679999997632  355555553

>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.94  E-value=1.9e-24  Score=188.60  Aligned_cols=229  Identities=20%  Similarity=0.258  Sum_probs=166.6

Q ss_pred             ceEEEEECCCCCeEEEeeCCCcEEEEECCCCeEEEEe-cCCCCeeEEEeecCCeE-EEEECCCceeccccceeeeeeeCC
Q 021399           54 AVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTF-NFDSPARSVDFAVGDKL-AVITTDPFMELNSAIHVKRIARDP  131 (313)
Q Consensus        54 ~V~~~~~~~~~~~l~s~s~D~~v~vWd~~~~~~~~~~-~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~  131 (313)
                      .+.+..|-|.++++++|...|.+.++|+.+...+.+. .+...+-+++..|+++- +.++.+....      .|+.....
T Consensus       414 y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~~l~Eti~AHdgaIWsi~~~pD~~g~vT~saDktVk------fWdf~l~~  487 (888)
T KOG0306|consen  414 YILASKFVPGDRYIVLGTKNGELQVFDLASASLVETIRAHDGAIWSISLSPDNKGFVTGSADKTVK------FWDFKLVV  487 (888)
T ss_pred             cEEEEEecCCCceEEEeccCCceEEEEeehhhhhhhhhccccceeeeeecCCCCceEEecCCcEEE------EEeEEEEe
Confidence            4566777788888888888888888888776655443 34566667777775543 3333444333      33322211


Q ss_pred             CCCCCc-eEEEec-----CCCCceEEEEEccCCCEEEEeeCCCeEEEEECCCCceeeecccccCceeceEEEEECCCCCE
Q 021399          132 ADQGGE-SVLILK-----GPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSH  205 (313)
Q Consensus       132 ~~~~~~-~~~~~~-----~~~~~i~~~~~~~~~~~i~t~~~d~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~  205 (313)
                      ..++.+ .+..+.     .-...|.++.++|++++++.+--|.++++|-+.+-+..-.+   -||.-+|.|+..|||++.
T Consensus       488 ~~~gt~~k~lsl~~~rtLel~ddvL~v~~Spdgk~LaVsLLdnTVkVyflDtlKFflsL---YGHkLPV~smDIS~DSkl  564 (888)
T KOG0306|consen  488 SVPGTQKKVLSLKHTRTLELEDDVLCVSVSPDGKLLAVSLLDNTVKVYFLDTLKFFLSL---YGHKLPVLSMDISPDSKL  564 (888)
T ss_pred             ccCcccceeeeeccceEEeccccEEEEEEcCCCcEEEEEeccCeEEEEEecceeeeeee---cccccceeEEeccCCcCe
Confidence            111111 111111     11346789999999999999999999999988876544333   489999999999999999


Q ss_pred             EEEeeCCCcEEEEECCCCcEEEEEe-cCCceeEEEeccCCCEEEEcccccCceeEeeccCCCceeeeeeehhhhhhhccc
Q 021399          206 FLTGSLDKSAKLWDARTLELIKTYV-TERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGV  284 (313)
Q Consensus       206 l~s~s~dg~i~iwd~~~~~~~~~~~-~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  284 (313)
                      ++|||.|..|++|-++-|.|-+.+. ++..+.++.|-|....+++ +|.|+             .++.||....+.+..+
T Consensus       565 ivTgSADKnVKiWGLdFGDCHKS~fAHdDSvm~V~F~P~~~~FFt-~gKD~-------------kvKqWDg~kFe~iq~L  630 (888)
T KOG0306|consen  565 IVTGSADKNVKIWGLDFGDCHKSFFAHDDSVMSVQFLPKTHLFFT-CGKDG-------------KVKQWDGEKFEEIQKL  630 (888)
T ss_pred             EEeccCCCceEEeccccchhhhhhhcccCceeEEEEcccceeEEE-ecCcc-------------eEEeechhhhhhheee
Confidence            9999999999999999999988886 4567899999996555444 44443             4678998888899999


Q ss_pred             cccccceeEEEECCCCCeeEE
Q 021399          285 KGHFGPINALAFNPDGKRYGF  305 (313)
Q Consensus       285 ~~h~~~V~~~~fspdgk~~~~  305 (313)
                      .+|...|++++.+|+|..+..
T Consensus       631 ~~H~~ev~cLav~~~G~~vvs  651 (888)
T KOG0306|consen  631 DGHHSEVWCLAVSPNGSFVVS  651 (888)
T ss_pred             ccchheeeeeEEcCCCCeEEe
Confidence            999999999999999987543

>KOG1273 consensus WD40 repeat protein [General function prediction only]

Probab=99.94  E-value=3.5e-25  Score=175.51  Aligned_cols=242  Identities=17%  Similarity=0.262  Sum_probs=175.7

Q ss_pred             eeEEEEccCCCEEEEeeCCCCeEEEeCCCCcEEEEecCCCCceEEEEECCCCCeEEEeeCCCcEEEEECCCCeEEEEecC
Q 021399           13 LTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFNF   92 (313)
Q Consensus        13 v~~~~fs~~g~~l~s~s~d~~i~iw~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~v~vWd~~~~~~~~~~~~   92 (313)
                      -.|+.|++-|.+||+|..||.|.|||+.+-..-+.+.+|-.+|.+++||++|+.|+|+|.|..|++||+..+.+...+.+
T Consensus        26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~rirf  105 (405)
T KOG1273|consen   26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLKRIRF  105 (405)
T ss_pred             cceEEeccCcceeeeeccCCcEEEEEccccchhhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCCceeEEEc
Confidence            57999999999999999999999999999988889999999999999999999999999999999999999999999999


Q ss_pred             CCCeeEEEeecC--CeEEEEECC--Cce-eccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEccCCCEEEEeeCC
Q 021399           93 DSPARSVDFAVG--DKLAVITTD--PFM-ELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGED  167 (313)
Q Consensus        93 ~~~~~~~~~~~~--~~~~~~~~~--~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~t~~~d  167 (313)
                      .+++..+.|+|.  .+.++..-+  +.+ .+....+. -+..+..   ++       -........|.+.|++|++|...
T Consensus       106 ~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~-~Lp~d~d---~d-------ln~sas~~~fdr~g~yIitGtsK  174 (405)
T KOG1273|consen  106 DSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHS-VLPKDDD---GD-------LNSSASHGVFDRRGKYIITGTSK  174 (405)
T ss_pred             cCccceeeeccccCCeEEEEEecCCcEEEEecCCcee-eccCCCc---cc-------cccccccccccCCCCEEEEecCc
Confidence            999999999884  333333211  111 11100000 0000000   00       00011123578899999999999


Q ss_pred             CeEEEEECCCCceeeecccccCceeceEEEEECCCCCEEEEeeCCCcEEEEECCCC-------cE--EEEEe---cCCce
Q 021399          168 AIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTL-------EL--IKTYV---TERPV  235 (313)
Q Consensus       168 ~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~dg~i~iwd~~~~-------~~--~~~~~---~~~~~  235 (313)
                      |.+.++|..+-+++..+...+  ...|..+.++..|.+|+..+.|..||.|+++..       ++  ..+++   ..-+.
T Consensus       175 Gkllv~~a~t~e~vas~rits--~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~W  252 (405)
T KOG1273|consen  175 GKLLVYDAETLECVASFRITS--VQAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQW  252 (405)
T ss_pred             ceEEEEecchheeeeeeeech--heeeeEEEEeccCcEEEEecCCceEEEEehhhhcccCccCCcChhHHHHHHHhhhhh
Confidence            999999999877665433221  356888899999999999999999999987631       11  12221   12346


Q ss_pred             eEEEeccCCCEEEEcccccCceeEeeccCCCce
Q 021399          236 NAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKF  268 (313)
Q Consensus       236 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~  268 (313)
                      ++++|+.+|.+++++. .....+|+|....|.+
T Consensus       253 k~ccfs~dgeYv~a~s-~~aHaLYIWE~~~GsL  284 (405)
T KOG1273|consen  253 KKCCFSGDGEYVCAGS-ARAHALYIWEKSIGSL  284 (405)
T ss_pred             hheeecCCccEEEecc-ccceeEEEEecCCcce
Confidence            7899999998877654 4556666666555443

>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.94  E-value=1.2e-25  Score=193.13  Aligned_cols=222  Identities=27%  Similarity=0.434  Sum_probs=176.6

Q ss_pred             cccccccceeEEEEccCCCEEEEeeCCCCeEEEeCCCC--cEEEEecCCCCceEEEEE-CCCCCeEEEeeCCCcEEEEEC
Q 021399            5 LMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNG--ERLGTYRGHNGAVWCCDV-SRDSMTLITGSADQTAKLWNV   81 (313)
Q Consensus         5 ~l~~h~~~v~~~~fs~~g~~l~s~s~d~~i~iw~~~~~--~~~~~~~~H~~~V~~~~~-~~~~~~l~s~s~D~~v~vWd~   81 (313)
                      .+..|.+=|..+....+|+.|+|+|.|.+|++|+...+  -+..+++.|...|.|+++ .+++.+++|||-|+.|++||+
T Consensus        68 sme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~~~c~stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDi  147 (735)
T KOG0308|consen   68 SMEHHSDWVNDIILCGNGKTLISASSDTTVKVWNAHKDNTFCMSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDI  147 (735)
T ss_pred             hhhhhHhHHhhHHhhcCCCceEEecCCceEEEeecccCcchhHhhhhcccchheeeeecccCceeEEecCCCccEEEEEc
Confidence            45668888888888889999999999999999998877  567889999999999999 788889999999999999999


Q ss_pred             CCCeEEEEecCCCCeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEe-cCCCCceEEEEEccCCCE
Q 021399           82 ETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLIL-KGPQGRINRAVWGPLNRT  160 (313)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~  160 (313)
                      +++.......++                                          ...+..+ .|+...|++++.++.+..
T Consensus       148 n~~~~~l~~s~n------------------------------------------~~t~~sl~sG~k~siYSLA~N~t~t~  185 (735)
T KOG0308|consen  148 NTGTATLVASFN------------------------------------------NVTVNSLGSGPKDSIYSLAMNQTGTI  185 (735)
T ss_pred             cCcchhhhhhcc------------------------------------------ccccccCCCCCccceeeeecCCcceE
Confidence            976321110000                                          0001111 167778999999999999


Q ss_pred             EEEeeCCCeEEEEECCCCceeeecccccCceeceEEEEECCCCCEEEEeeCCCcEEEEECCCCcEEEEEe-cCCceeEEE
Q 021399          161 IISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYV-TERPVNAVT  239 (313)
Q Consensus       161 i~t~~~d~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~-~~~~~~~~~  239 (313)
                      |++|+-.+.|++||.++.+.+.++.   ||...|+++..+.||..++|+|+||+|++||+..++|+.++. +...+=++.
T Consensus       186 ivsGgtek~lr~wDprt~~kimkLr---GHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl~T~~vH~e~VWaL~  262 (735)
T KOG0308|consen  186 IVSGGTEKDLRLWDPRTCKKIMKLR---GHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQRCLATYIVHKEGVWALQ  262 (735)
T ss_pred             EEecCcccceEEeccccccceeeee---ccccceEEEEEcCCCCeEeecCCCceEEeeeccccceeeeEEeccCceEEEe
Confidence            9999999999999999987665553   899999999999999999999999999999999999999986 444567778


Q ss_pred             eccCCCEEEEcccccCceeEeeccCCCceeeeee
Q 021399          240 MSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFF  273 (313)
Q Consensus       240 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  273 (313)
                      .+|.-.+++.|+.  ...++..|.|.......++
T Consensus       263 ~~~sf~~vYsG~r--d~~i~~Tdl~n~~~~tlic  294 (735)
T KOG0308|consen  263 SSPSFTHVYSGGR--DGNIYRTDLRNPAKSTLIC  294 (735)
T ss_pred             eCCCcceEEecCC--CCcEEecccCCchhheEee
Confidence            8888888877654  3446677766643333333

>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.94  E-value=9.4e-25  Score=166.55  Aligned_cols=232  Identities=21%  Similarity=0.338  Sum_probs=177.4

Q ss_pred             cccccccceeEEEEccCCCEEEEeeCCCCeEEEeCCCCcEEEEecCCCCceEEEEECCCCCeEEEeeCCCcEEEEECCCC
Q 021399            5 LMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETG   84 (313)
Q Consensus         5 ~l~~h~~~v~~~~fs~~g~~l~s~s~d~~i~iw~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~v~vWd~~~~   84 (313)
                      +..||...|..++.+.|...+++|+.|+.+.+||+++|+++..|++|.++|+.+.|+.+...++|||.|.++++||-++.
T Consensus        54 tYsghG~EVlD~~~s~Dnskf~s~GgDk~v~vwDV~TGkv~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~  133 (307)
T KOG0316|consen   54 TYSGHGHEVLDAALSSDNSKFASCGGDKAVQVWDVNTGKVDRRFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSR  133 (307)
T ss_pred             eecCCCceeeeccccccccccccCCCCceEEEEEcccCeeeeecccccceeeEEEecCcceEEEeccccceeEEEEcccC
Confidence            66789999999999999999999999999999999999999999999999999999999999999999999999998654


Q ss_pred             --eEEEEec-CCCCeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEccCCCEE
Q 021399           85 --AQLFTFN-FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTI  161 (313)
Q Consensus        85 --~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i  161 (313)
                        ++++++. ....+.++.+. +..++..+.+.      ..+.+++...      ..  ....-..+|+++.|+++++..
T Consensus       134 s~ePiQildea~D~V~Si~v~-~heIvaGS~DG------tvRtydiR~G------~l--~sDy~g~pit~vs~s~d~nc~  198 (307)
T KOG0316|consen  134 SFEPIQILDEAKDGVSSIDVA-EHEIVAGSVDG------TVRTYDIRKG------TL--SSDYFGHPITSVSFSKDGNCS  198 (307)
T ss_pred             CCCccchhhhhcCceeEEEec-ccEEEeeccCC------cEEEEEeecc------ee--ehhhcCCcceeEEecCCCCEE
Confidence              4555553 23334444332 23333333332      2222322211      11  111123579999999999999


Q ss_pred             EEeeCCCeEEEEECCCCceeeecccccCceece--EEEEECCCCCEEEEeeCCCcEEEEECCCCcEEEEEecCC-c-eeE
Q 021399          162 ISAGEDAIVRIWDTETGKLLKESDKETGHKKTI--TSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTER-P-VNA  237 (313)
Q Consensus       162 ~t~~~d~~i~lwd~~~~~~~~~~~~~~~h~~~v--~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~-~-~~~  237 (313)
                      +.++-|++|+|.|-.++++++...   +|...-  ...++.....++++||.||.+.+||+.....+..+.... . +..
T Consensus       199 La~~l~stlrLlDk~tGklL~sYk---Ghkn~eykldc~l~qsdthV~sgSEDG~Vy~wdLvd~~~~sk~~~~~~v~v~d  275 (307)
T KOG0316|consen  199 LASSLDSTLRLLDKETGKLLKSYK---GHKNMEYKLDCCLNQSDTHVFSGSEDGKVYFWDLVDETQISKLSVVSTVIVTD  275 (307)
T ss_pred             EEeeccceeeecccchhHHHHHhc---ccccceeeeeeeecccceeEEeccCCceEEEEEeccceeeeeeccCCceeEEe
Confidence            999999999999999999887665   454433  333566666789999999999999999998888886543 3 678


Q ss_pred             EEeccCCCEEEEccccc
Q 021399          238 VTMSPLLDHVVLGGGQD  254 (313)
Q Consensus       238 ~~~~p~~~~~~~~~~~~  254 (313)
                      ++++|..+.++++++..
T Consensus       276 l~~hp~~~~f~~A~~~~  292 (307)
T KOG0316|consen  276 LSCHPTMDDFITATGHG  292 (307)
T ss_pred             eecccCccceeEecCCc
Confidence            99999988888776543

>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=99.94  E-value=1.5e-24  Score=196.30  Aligned_cols=235  Identities=22%  Similarity=0.376  Sum_probs=177.8

Q ss_pred             cccccccceeEEEEccCCCEEEEeeCCCCeEEEeCCC-------C-----------cEEEEecCCCCceEEEEECCCCCe
Q 021399            5 LMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADN-------G-----------ERLGTYRGHNGAVWCCDVSRDSMT   66 (313)
Q Consensus         5 ~l~~h~~~v~~~~fs~~g~~l~s~s~d~~i~iw~~~~-------~-----------~~~~~~~~H~~~V~~~~~~~~~~~   66 (313)
                      .+..|.+.|.|++|+|||++||+||.|+.|.||..+.       +           +.+..+++|.+.|..++|+|++.+
T Consensus        64 ~m~~h~~sv~CVR~S~dG~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~  143 (942)
T KOG0973|consen   64 TMDDHDGSVNCVRFSPDGSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSL  143 (942)
T ss_pred             eeccccCceeEEEECCCCCeEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCccE
Confidence            4567999999999999999999999999999998762       1           256788999999999999999999


Q ss_pred             EEEeeCCCcEEEEECCCCeEEEEecCCCCeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCC
Q 021399           67 LITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQ  146 (313)
Q Consensus        67 l~s~s~D~~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  146 (313)
                      |+|+|.|++|.|||..+.+                                                    .+..+++|+
T Consensus       144 lvS~s~DnsViiwn~~tF~----------------------------------------------------~~~vl~~H~  171 (942)
T KOG0973|consen  144 LVSVSLDNSVIIWNAKTFE----------------------------------------------------LLKVLRGHQ  171 (942)
T ss_pred             EEEecccceEEEEccccce----------------------------------------------------eeeeeeccc
Confidence            9999999999999977643                                                    234567899


Q ss_pred             CceEEEEEccCCCEEEEeeCCCeEEEEECCCCceeeecccccC---ceeceEEEEECCCCCEEEEeeC----CCcEEEEE
Q 021399          147 GRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETG---HKKTITSLAKAADGSHFLTGSL----DKSAKLWD  219 (313)
Q Consensus       147 ~~i~~~~~~~~~~~i~t~~~d~~i~lwd~~~~~~~~~~~~~~~---h~~~v~~~~~s~~~~~l~s~s~----dg~i~iwd  219 (313)
                      +.|..+.|.|.|++|++-++|++|++|.+.+....+.+.....   -..-.+.+.|||||.+|++.-.    -.++.|.+
T Consensus       172 s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA~n~~~~~~~Iie  251 (942)
T KOG0973|consen  172 SLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPNAVNGGKSTIAIIE  251 (942)
T ss_pred             ccccceEECCccCeeeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeecccCCCcCeecchhhccCCcceeEEEe
Confidence            9999999999999999999999999999776555444433222   2345778999999999998643    34678888


Q ss_pred             CCCCcEEEEEe-cCCceeEEEeccCC---------------CE-EEEcccccCceeEeeccCCCceeeeeeehhhhhhhc
Q 021399          220 ARTLELIKTYV-TERPVNAVTMSPLL---------------DH-VVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIG  282 (313)
Q Consensus       220 ~~~~~~~~~~~-~~~~~~~~~~~p~~---------------~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  282 (313)
                      ..+.+.-..+. |..++.++.|+|.-               .+ +++.|+.|. .            +.+|.....+++-
T Consensus       252 R~tWk~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDr-S------------lSVW~T~~~RPl~  318 (942)
T KOG0973|consen  252 RGTWKVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDR-S------------LSVWNTALPRPLF  318 (942)
T ss_pred             cCCceeeeeeecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCc-c------------EEEEecCCCCchh
Confidence            87777666664 56689999999831               11 333344332 2            3345544344432


Q ss_pred             ccc-ccccceeEEEECCCCCeeE
Q 021399          283 GVK-GHFGPINALAFNPDGKRYG  304 (313)
Q Consensus       283 ~~~-~h~~~V~~~~fspdgk~~~  304 (313)
                      ..+ --+..|.+++|+|||..+=
T Consensus       319 vi~~lf~~SI~DmsWspdG~~Lf  341 (942)
T KOG0973|consen  319 VIHNLFNKSIVDMSWSPDGFSLF  341 (942)
T ss_pred             hhhhhhcCceeeeeEcCCCCeEE
Confidence            111 1257999999999987743

>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.94  E-value=3.4e-25  Score=169.71  Aligned_cols=240  Identities=23%  Similarity=0.327  Sum_probs=174.3

Q ss_pred             cccccccceeEEEEccCCCEEEEeeCCCCeEEEeCCCC---cEEEEecCCCCceEEEEECC--CCCeEEEeeCCCcEEEE
Q 021399            5 LMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNG---ERLGTYRGHNGAVWCCDVSR--DSMTLITGSADQTAKLW   79 (313)
Q Consensus         5 ~l~~h~~~v~~~~fs~~g~~l~s~s~d~~i~iw~~~~~---~~~~~~~~H~~~V~~~~~~~--~~~~l~s~s~D~~v~vW   79 (313)
                      +-..|++-|..+..+-.|++|+|++.|++|||+...+.   .++.+|+||+++|+.++|..  -|++|+|++.||.|.||
T Consensus         6 idt~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiW   85 (299)
T KOG1332|consen    6 IDTQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIW   85 (299)
T ss_pred             hhhhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEE
Confidence            45679999999888889999999999999999988765   46789999999999999964  58999999999999999


Q ss_pred             ECCCCeEEEEe---cCCCCeeEEEeecC---CeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEE
Q 021399           80 NVETGAQLFTF---NFDSPARSVDFAVG---DKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAV  153 (313)
Q Consensus        80 d~~~~~~~~~~---~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~  153 (313)
                      .-+.+.-....   .+...+.++.|.|-   -.+.+.+.+....+..      ..   .+..-........|.-.+++++
T Consensus        86 ke~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~------~~---~~g~w~t~ki~~aH~~GvnsVs  156 (299)
T KOG1332|consen   86 KEENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLT------YD---SSGGWTTSKIVFAHEIGVNSVS  156 (299)
T ss_pred             ecCCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEE------Ec---CCCCccchhhhhccccccceee
Confidence            98776322221   24567788888773   2344444444332211      11   0011122334467888889999


Q ss_pred             EccC---C-----------CEEEEeeCCCeEEEEECCCCceeeecccccCceeceEEEEECCCC----CEEEEeeCCCcE
Q 021399          154 WGPL---N-----------RTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADG----SHFLTGSLDKSA  215 (313)
Q Consensus       154 ~~~~---~-----------~~i~t~~~d~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~----~~l~s~s~dg~i  215 (313)
                      |.|.   |           ++|++||.|..|+||+..++.=..+ ....+|.+.|+.++|.|.-    .+|||+|.||++
T Consensus       157 wapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e-~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~v  235 (299)
T KOG1332|consen  157 WAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLE-RTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTV  235 (299)
T ss_pred             ecCcCCCccccccCcccccceeeccCCccceeeeecCCcchhhh-hhhhhcchhhhhhhhccccCCCceeeEEecCCCcE
Confidence            9886   3           5699999999999999877532211 1145799999999999864    479999999999


Q ss_pred             EEEECCCC-cE-EEEEe--cCCceeEEEeccCCCEEEEccccc
Q 021399          216 KLWDARTL-EL-IKTYV--TERPVNAVTMSPLLDHVVLGGGQD  254 (313)
Q Consensus       216 ~iwd~~~~-~~-~~~~~--~~~~~~~~~~~p~~~~~~~~~~~~  254 (313)
                      .||..+.. +. ..++.  .+..+-.++|++.|+.+.+++|+.
T Consensus       236 iIwt~~~e~e~wk~tll~~f~~~~w~vSWS~sGn~LaVs~GdN  278 (299)
T KOG1332|consen  236 IIWTKDEEYEPWKKTLLEEFPDVVWRVSWSLSGNILAVSGGDN  278 (299)
T ss_pred             EEEEecCccCcccccccccCCcceEEEEEeccccEEEEecCCc
Confidence            99976532 11 11111  244688899999999988887643

>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.93  E-value=1.5e-26  Score=200.77  Aligned_cols=238  Identities=24%  Similarity=0.383  Sum_probs=197.2

Q ss_pred             cccccccceeEEEEccCCCEEEEeeCCCCeEEEeCCCCcEEEEecCCCCceEEEEECCCCCeEEEeeCCCcEEEEECCCC
Q 021399            5 LMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETG   84 (313)
Q Consensus         5 ~l~~h~~~v~~~~fs~~g~~l~s~s~d~~i~iw~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~v~vWd~~~~   84 (313)
                      ....|...|.|+..-..++.+++|+.|..+-+|.......+..|.+|+.+|-++.|+++..++++|+.||+||+||++++
T Consensus        23 ~~~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~~i~S~~~hespIeSl~f~~~E~LlaagsasgtiK~wDleeA  102 (825)
T KOG0267|consen   23 EFVAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPNAITSLTGHESPIESLTFDTSERLLAAGSASGTIKVWDLEEA  102 (825)
T ss_pred             hhhhhhhhhceeeeeccceeeccCCCceeeccccccCCchhheeeccCCcceeeecCcchhhhcccccCCceeeeehhhh
Confidence            45678888999988778899999999999999988877777789999999999999999999999999999999999876


Q ss_pred             eEEEEecCCCCeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEccCCCEEEEe
Q 021399           85 AQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISA  164 (313)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~t~  164 (313)
                      +.+.                                                    .+.+|...+.++.|+|-+.++++|
T Consensus       103 k~vr----------------------------------------------------tLtgh~~~~~sv~f~P~~~~~a~g  130 (825)
T KOG0267|consen  103 KIVR----------------------------------------------------TLTGHLLNITSVDFHPYGEFFASG  130 (825)
T ss_pred             hhhh----------------------------------------------------hhhccccCcceeeeccceEEeccc
Confidence            5332                                                    234566778889999999999999


Q ss_pred             eCCCeEEEEECCCCceeeecccccCceeceEEEEECCCCCEEEEeeCCCcEEEEECCCCcEEEEEe-cCCceeEEEeccC
Q 021399          165 GEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYV-TERPVNAVTMSPL  243 (313)
Q Consensus       165 ~~d~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~-~~~~~~~~~~~p~  243 (313)
                      +.|+.+++||.+...+.....   +|...+..+.|+|+|.++++|+.|.+++|||+..++.+.+|. ++.++..+.|+|.
T Consensus       131 Stdtd~~iwD~Rk~Gc~~~~~---s~~~vv~~l~lsP~Gr~v~~g~ed~tvki~d~~agk~~~ef~~~e~~v~sle~hp~  207 (825)
T KOG0267|consen  131 STDTDLKIWDIRKKGCSHTYK---SHTRVVDVLRLSPDGRWVASGGEDNTVKIWDLTAGKLSKEFKSHEGKVQSLEFHPL  207 (825)
T ss_pred             cccccceehhhhccCceeeec---CCcceeEEEeecCCCceeeccCCcceeeeecccccccccccccccccccccccCch
Confidence            999999999998666665543   588899999999999999999999999999999999999987 6788999999996


Q ss_pred             CCEEEEcccccCceeEeeccCCCceeeeeeehhhhhhhccccccccceeEEEECCCCCeeEEEEEEEee
Q 021399          244 LDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKRYGFLLLQINV  312 (313)
Q Consensus       244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~fspdgk~~~~~~~~~~~  312 (313)
                      . .++..|+.|.             .++|||.++...+...+.-...|-+++|+|||+.+ ++-+|+++
T Consensus       208 e-~Lla~Gs~d~-------------tv~f~dletfe~I~s~~~~~~~v~~~~fn~~~~~~-~~G~q~sl  261 (825)
T KOG0267|consen  208 E-VLLAPGSSDR-------------TVRFWDLETFEVISSGKPETDGVRSLAFNPDGKIV-LSGEQISL  261 (825)
T ss_pred             h-hhhccCCCCc-------------eeeeeccceeEEeeccCCccCCceeeeecCCceee-ecCchhhh
Confidence            4 3444455443             35788877666666666667899999999999875 34445443

>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.93  E-value=5.1e-25  Score=169.69  Aligned_cols=195  Identities=21%  Similarity=0.362  Sum_probs=155.3

Q ss_pred             cccccccceeEEEEccC-CCEEEEeeCCCCeEEEeCCCCcEEEEecCCCCceEEEEECCC-CCeEEEeeCCCcEEEEECC
Q 021399            5 LMKGHERPLTYLKYNKD-GDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRD-SMTLITGSADQTAKLWNVE   82 (313)
Q Consensus         5 ~l~~h~~~v~~~~fs~~-g~~l~s~s~d~~i~iw~~~~~~~~~~~~~H~~~V~~~~~~~~-~~~l~s~s~D~~v~vWd~~   82 (313)
                      .++.|+.+|+++.|++. +..++++|.|++||+|+...+..+.+|.||+.-|....|+|. .++|+++|.|+++++||++
T Consensus        99 ~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr  178 (311)
T KOG0277|consen   99 KFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNSVQTFNGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVR  178 (311)
T ss_pred             HHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCcceEeecCCccEEEEEecCCCCCCeEEEccCCceEEEEEec
Confidence            78899999999999975 567788899999999999999999999999999999999985 6799999999999999987


Q ss_pred             CCeEEEEecCCCCeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEcc-CCCEE
Q 021399           83 TGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGP-LNRTI  161 (313)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~i  161 (313)
                      ...                                                   +. +.++.|..+|.++.|+. +.+.+
T Consensus       179 ~~g---------------------------------------------------k~-~~i~ah~~Eil~cdw~ky~~~vl  206 (311)
T KOG0277|consen  179 SPG---------------------------------------------------KF-MSIEAHNSEILCCDWSKYNHNVL  206 (311)
T ss_pred             CCC---------------------------------------------------ce-eEEEeccceeEeecccccCCcEE
Confidence            521                                                   11 12455667788888874 45678


Q ss_pred             EEeeCCCeEEEEECCCCc-eeeecccccCceeceEEEEECCC-CCEEEEeeCCCcEEEEECCCCc-EEEEEe-cCCceeE
Q 021399          162 ISAGEDAIVRIWDTETGK-LLKESDKETGHKKTITSLAKAAD-GSHFLTGSLDKSAKLWDARTLE-LIKTYV-TERPVNA  237 (313)
Q Consensus       162 ~t~~~d~~i~lwd~~~~~-~~~~~~~~~~h~~~v~~~~~s~~-~~~l~s~s~dg~i~iwd~~~~~-~~~~~~-~~~~~~~  237 (313)
                      +||+.|+.||.||+++-+ ++.   ...+|.-.|+.+.|||- .+.|||++.|.+++|||...+. ++.+.. +.+-+..
T Consensus       207 ~Tg~vd~~vr~wDir~~r~pl~---eL~gh~~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~ds~~e~~~~HtEFv~g  283 (311)
T KOG0277|consen  207 ATGGVDNLVRGWDIRNLRTPLF---ELNGHGLAVRKVKFSPHHASLLASASYDMTVRIWDPERQDSAIETVDHHTEFVCG  283 (311)
T ss_pred             EecCCCceEEEEehhhccccce---eecCCceEEEEEecCcchhhHhhhccccceEEecccccchhhhhhhhccceEEec
Confidence            999999999999997643 333   33589999999999996 4579999999999999988654 333333 3456788


Q ss_pred             EEeccCCCEEEEccccc
Q 021399          238 VTMSPLLDHVVLGGGQD  254 (313)
Q Consensus       238 ~~~~p~~~~~~~~~~~~  254 (313)
                      +.|++.....++..|=|
T Consensus       284 ~Dws~~~~~~vAs~gWD  300 (311)
T KOG0277|consen  284 LDWSLFDPGQVASTGWD  300 (311)
T ss_pred             cccccccCceeeecccc
Confidence            88998866666655433

>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.93  E-value=6.4e-24  Score=175.88  Aligned_cols=267  Identities=24%  Similarity=0.321  Sum_probs=193.5

Q ss_pred             ccccccccceeEEEEccCCCEEEEeeCCCCeEEEeCCCCcEE----EE------------e--cCCCCceEEEEECCCCC
Q 021399            4 ILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERL----GT------------Y--RGHNGAVWCCDVSRDSM   65 (313)
Q Consensus         4 ~~l~~h~~~v~~~~fs~~g~~l~s~s~d~~i~iw~~~~~~~~----~~------------~--~~H~~~V~~~~~~~~~~   65 (313)
                      +.+..|.-+|.|+.++|++++.++++.|++|.-|+..+++..    .+            .  ++|.+.+.+++.++||+
T Consensus       136 ~~~~~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dgk  215 (479)
T KOG0299|consen  136 RVIGKHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDGK  215 (479)
T ss_pred             eeeccccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCCc
Confidence            466789999999999999999999999999999998887632    11            1  37889999999999999


Q ss_pred             eEEEeeCCCcEEEEECCCCeEEEEec-CCCCeeEEEeecCC-eEEEEECCCceeccccceeeeeeeCCCCCCCceEEEec
Q 021399           66 TLITGSADQTAKLWNVETGAQLFTFN-FDSPARSVDFAVGD-KLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILK  143 (313)
Q Consensus        66 ~l~s~s~D~~v~vWd~~~~~~~~~~~-~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  143 (313)
                      +|++|+.|..|.||+..+.+.+..+. +..++.++.|..+. .+...+.+.      .+.+|.+..      ...+..+-
T Consensus       216 ylatgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Dr------svkvw~~~~------~s~vetly  283 (479)
T KOG0299|consen  216 YLATGGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGTSELYSASADR------SVKVWSIDQ------LSYVETLY  283 (479)
T ss_pred             EEEecCCCceEEEecCcccchhhcccccccceeeeeeecCccceeeeecCC------ceEEEehhH------hHHHHHHh
Confidence            99999999999999999999887754 45677788777653 333333332      223333221      22344567


Q ss_pred             CCCCceEEEEEccCCCEEEEeeCCCeEEEEECCCCceeeecccccCceeceEEEEECCCCCEEEEeeCCCcEEEEECCCC
Q 021399          144 GPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTL  223 (313)
Q Consensus       144 ~~~~~i~~~~~~~~~~~i~t~~~d~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~dg~i~iwd~~~~  223 (313)
                      +|+..|..+.....++.+-+|+.|.++++|++..-..+  +.  .+|.+.+-|++|-.+ .++++||.||.|.+|++.+.
T Consensus       284 GHqd~v~~IdaL~reR~vtVGgrDrT~rlwKi~eesql--if--rg~~~sidcv~~In~-~HfvsGSdnG~IaLWs~~KK  358 (479)
T KOG0299|consen  284 GHQDGVLGIDALSRERCVTVGGRDRTVRLWKIPEESQL--IF--RGGEGSIDCVAFIND-EHFVSGSDNGSIALWSLLKK  358 (479)
T ss_pred             CCccceeeechhcccceEEeccccceeEEEecccccee--ee--eCCCCCeeeEEEecc-cceeeccCCceEEEeeeccc
Confidence            89999988877776776666679999999998443221  11  257788999998755 57999999999999999999


Q ss_pred             cEEEEEecCC-------------ceeEEEeccCCCEEEEcccccCceeEeeccCCCceeeeeeehhhh----hhhccccc
Q 021399          224 ELIKTYVTER-------------PVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQ----EEIGGVKG  286 (313)
Q Consensus       224 ~~~~~~~~~~-------------~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~  286 (313)
                      +++.+....+             =+++++..|..+.++.++++  +.            +++|....+    +.+..++ 
T Consensus       359 kplf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~--G~------------vrLW~i~~g~r~i~~l~~ls-  423 (479)
T KOG0299|consen  359 KPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWS--GC------------VRLWKIEDGLRAINLLYSLS-  423 (479)
T ss_pred             CceeEeeccccccCCccccccccceeeeEecccCceEEecCCC--Cc------------eEEEEecCCccccceeeecc-
Confidence            9887764211             14567777776654443322  22            345554332    2233444 


Q ss_pred             cccceeEEEECCCCCe
Q 021399          287 HFGPINALAFNPDGKR  302 (313)
Q Consensus       287 h~~~V~~~~fspdgk~  302 (313)
                      -.+-|++|+|+++||.
T Consensus       424 ~~GfVNsl~f~~sgk~  439 (479)
T KOG0299|consen  424 LVGFVNSLAFSNSGKR  439 (479)
T ss_pred             cccEEEEEEEccCCCE
Confidence            4789999999999993

>KOG0294 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.93  E-value=6.3e-24  Score=168.33  Aligned_cols=217  Identities=21%  Similarity=0.320  Sum_probs=164.3

Q ss_pred             cccccccceeEEEEccCCC--EEEEeeCCCCeEEEeCCCCcEEEEecCCCCceEEEEECCCCCeEEEeeCCCcEEEEECC
Q 021399            5 LMKGHERPLTYLKYNKDGD--LLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVE   82 (313)
Q Consensus         5 ~l~~h~~~v~~~~fs~~g~--~l~s~s~d~~i~iw~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~v~vWd~~   82 (313)
                      .|-.|.+.|++|.|.+...  .|+||+.||.|.+|+...=++++++++|.+.|+.++.+|.+++.+|.|.|+.++.||+-
T Consensus        78 ~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W~~~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV  157 (362)
T KOG0294|consen   78 ILLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSWELLKSLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLV  157 (362)
T ss_pred             ceeccccceEEEEecCCcchhheeeecCCCcEEEEEcCCeEEeeeecccccccceeEecCCCceEEEEcCCceeeeehhh
Confidence            5677999999999998876  99999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCeEEEEecCCCCeeEEEeec-CCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEccCCCEE
Q 021399           83 TGAQLFTFNFDSPARSVDFAV-GDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTI  161 (313)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i  161 (313)
                      +++..+..+.......+.|.+ ++.+++...+...       .+.+..       ..+......+.++.++.|-. +..+
T Consensus       158 ~Gr~a~v~~L~~~at~v~w~~~Gd~F~v~~~~~i~-------i~q~d~-------A~v~~~i~~~~r~l~~~~l~-~~~L  222 (362)
T KOG0294|consen  158 RGRVAFVLNLKNKATLVSWSPQGDHFVVSGRNKID-------IYQLDN-------ASVFREIENPKRILCATFLD-GSEL  222 (362)
T ss_pred             cCccceeeccCCcceeeEEcCCCCEEEEEeccEEE-------EEeccc-------HhHhhhhhccccceeeeecC-CceE
Confidence            998888777777677788887 4556665544321       111000       00000001112344555543 4578


Q ss_pred             EEeeCCCeEEEEECCCCceeeecccccCceeceEEEEE--CCCCCEEEEeeCCCcEEEEECCCC-----cEEEEEecCCc
Q 021399          162 ISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAK--AADGSHFLTGSLDKSAKLWDARTL-----ELIKTYVTERP  234 (313)
Q Consensus       162 ~t~~~d~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~--s~~~~~l~s~s~dg~i~iwd~~~~-----~~~~~~~~~~~  234 (313)
                      ++|++|+.|++||..+..++..+   .+|...|.++.+  .|++.+|+|+|+||.|++||+++.     +++..+.....
T Consensus       223 ~vG~d~~~i~~~D~ds~~~~~~~---~AH~~RVK~i~~~~~~~~~~lvTaSSDG~I~vWd~~~~~k~~~~~l~e~n~~~R  299 (362)
T KOG0294|consen  223 LVGGDNEWISLKDTDSDTPLTEF---LAHENRVKDIASYTNPEHEYLVTASSDGFIKVWDIDMETKKRPTLLAELNTNVR  299 (362)
T ss_pred             EEecCCceEEEeccCCCccceee---ecchhheeeeEEEecCCceEEEEeccCceEEEEEccccccCCcceeEEeecCCc
Confidence            99999999999999887766655   379999999873  467889999999999999999876     34444444444


Q ss_pred             eeEEE
Q 021399          235 VNAVT  239 (313)
Q Consensus       235 ~~~~~  239 (313)
                      ++|+.
T Consensus       300 ltCl~  304 (362)
T KOG0294|consen  300 LTCLR  304 (362)
T ss_pred             cceee
Confidence            44443

>KOG0269 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.93  E-value=6.9e-25  Score=191.87  Aligned_cols=218  Identities=20%  Similarity=0.306  Sum_probs=168.1

Q ss_pred             EEEEc-cCCCEEEEeeCCCCeEEEeCCC---CcEEEEecCCCCceEEEEECCC-CCeEEEeeCCCcEEEEECCCCeEEEE
Q 021399           15 YLKYN-KDGDLLFSCAKDHTPTVWFADN---GERLGTYRGHNGAVWCCDVSRD-SMTLITGSADQTAKLWNVETGAQLFT   89 (313)
Q Consensus        15 ~~~fs-~~g~~l~s~s~d~~i~iw~~~~---~~~~~~~~~H~~~V~~~~~~~~-~~~l~s~s~D~~v~vWd~~~~~~~~~   89 (313)
                      .|.|. -+.++||+++..|.|.+||+..   .+++..|..|+-.|.++.|++. ..+|+|||+||+||+||++..+...+
T Consensus        92 DVkW~~~~~NlIAT~s~nG~i~vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~t  171 (839)
T KOG0269|consen   92 DVKWGQLYSNLIATCSTNGVISVWDLNKSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSKST  171 (839)
T ss_pred             hcccccchhhhheeecCCCcEEEEecCccccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeeccccccc
Confidence            45665 3467999999999999999987   5667789999999999999875 46999999999999999987654322


Q ss_pred             ecCCCCeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEccC-CCEEEEeeCCC
Q 021399           90 FNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPL-NRTIISAGEDA  168 (313)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~i~t~~~d~  168 (313)
                      +                                                    .+....|.++.|+|. +..|+++.+.|
T Consensus       172 ~----------------------------------------------------~~nSESiRDV~fsp~~~~~F~s~~dsG  199 (839)
T KOG0269|consen  172 F----------------------------------------------------RSNSESIRDVKFSPGYGNKFASIHDSG  199 (839)
T ss_pred             c----------------------------------------------------cccchhhhceeeccCCCceEEEecCCc
Confidence            1                                                    112345667778765 56889999999


Q ss_pred             eEEEEECCCCceeeecccccCceeceEEEEECCCCCEEEEeeCCCcEEEEECCCCc--EEEEEecCCceeEEEeccCCCE
Q 021399          169 IVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLE--LIKTYVTERPVNAVTMSPLLDH  246 (313)
Q Consensus       169 ~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~--~~~~~~~~~~~~~~~~~p~~~~  246 (313)
                      .+++||++....  ......+|++.|.++.|+|++.+||||+.|++|+|||+.+.+  ++.++....++..|.|-|...+
T Consensus       200 ~lqlWDlRqp~r--~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd~t~~~~~~~~tInTiapv~rVkWRP~~~~  277 (839)
T KOG0269|consen  200 YLQLWDLRQPDR--CEKKLTAHNGPVLCLNWHPNREWLATGGRDKMVKIWDMTDSRAKPKHTINTIAPVGRVKWRPARSY  277 (839)
T ss_pred             eEEEeeccCchh--HHHHhhcccCceEEEeecCCCceeeecCCCccEEEEeccCCCccceeEEeecceeeeeeeccCccc
Confidence            999999986543  223345799999999999999999999999999999998654  4555666789999999999876


Q ss_pred             EEEcccc-cCceeEeeccCCCceeeeeeehh-hhhhhccccccccceeEEEECC
Q 021399          247 VVLGGGQ-DASAVTTTDHRAGKFEAKFFDKI-LQEEIGGVKGHFGPINALAFNP  298 (313)
Q Consensus       247 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~h~~~V~~~~fsp  298 (313)
                      .+++++. ++..|            ++||.. .-.+...+..|..-|+.++|..
T Consensus       278 hLAtcsmv~dtsV------------~VWDvrRPYIP~~t~~eH~~~vt~i~W~~  319 (839)
T KOG0269|consen  278 HLATCSMVVDTSV------------HVWDVRRPYIPYATFLEHTDSVTGIAWDS  319 (839)
T ss_pred             hhhhhhccccceE------------EEEeeccccccceeeeccCccccceeccC
Confidence            6665432 33444            445542 2334556778999999999865

>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]

Probab=99.93  E-value=9.7e-25  Score=173.81  Aligned_cols=231  Identities=19%  Similarity=0.343  Sum_probs=183.1

Q ss_pred             ccccccceeEEEEccCCCEEEEeeCCCCeEEEeCCCCcEEEEec-CCCCceEEEEECCCCCeEEEeeCCCcEEEEECCCC
Q 021399            6 MKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYR-GHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETG   84 (313)
Q Consensus         6 l~~h~~~v~~~~fs~~g~~l~s~s~d~~i~iw~~~~~~~~~~~~-~H~~~V~~~~~~~~~~~l~s~s~D~~v~vWd~~~~   84 (313)
                      +..|.++|.|+.||.|.++|++|+.||.|+||.+.+|.++..|+ +|...|+|+.|+.|+..++|+|.|.++++--+.+|
T Consensus       259 fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvWri~tG~ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSG  338 (508)
T KOG0275|consen  259 FMMMDDAVLCISFSRDSEMLASGSQDGKIKVWRIETGQCLRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSG  338 (508)
T ss_pred             eeecccceEEEeecccHHHhhccCcCCcEEEEEEecchHHHHhhhhhccCeeEEEEccCcchhhcccccceEEEeccccc
Confidence            45688999999999999999999999999999999999999987 89999999999999999999999999999877766


Q ss_pred             eEEEEecCCCCeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEccCCCEEEEe
Q 021399           85 AQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISA  164 (313)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~t~  164 (313)
                      ++                                                    +..+.||.+.|+.+.|.++|.+++++
T Consensus       339 K~----------------------------------------------------LKEfrGHsSyvn~a~ft~dG~~iisa  366 (508)
T KOG0275|consen  339 KC----------------------------------------------------LKEFRGHSSYVNEATFTDDGHHIISA  366 (508)
T ss_pred             hh----------------------------------------------------HHHhcCccccccceEEcCCCCeEEEe
Confidence            53                                                    23456788899999999999999999


Q ss_pred             eCCCeEEEEECCCCceeeecccccCceeceEEEEECC-CCCEEEEeeCCCcEEEEECCCCcEEEEEec----CCceeEEE
Q 021399          165 GEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAA-DGSHFLTGSLDKSAKLWDARTLELIKTYVT----ERPVNAVT  239 (313)
Q Consensus       165 ~~d~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~-~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~----~~~~~~~~  239 (313)
                      +.||+|++|+.++..++.++... +....|.++-.-| +..+++.+...+++.+.++. |+.++++..    ...-.+++
T Consensus       367 SsDgtvkvW~~KtteC~~Tfk~~-~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~q-GQvVrsfsSGkREgGdFi~~~  444 (508)
T KOG0275|consen  367 SSDGTVKVWHGKTTECLSTFKPL-GTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQ-GQVVRSFSSGKREGGDFINAI  444 (508)
T ss_pred             cCCccEEEecCcchhhhhhccCC-CCcccceeEEEcCCCCceEEEEcCCCeEEEEecc-ceEEeeeccCCccCCceEEEE
Confidence            99999999999999998887643 4566777776555 55678999999999999985 677777753    23445667


Q ss_pred             eccCCCEEEEcccccCceeEeeccCCCceeeeeeehhhhhhhccccccccceeEEEECCCCCeeE
Q 021399          240 MSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKRYG  304 (313)
Q Consensus       240 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~fspdgk~~~  304 (313)
                      .+|.|+.++..| . +..+|.+....|++|..            +.-|...|..++-+|....+|
T Consensus       445 lSpkGewiYcig-E-D~vlYCF~~~sG~LE~t------------l~VhEkdvIGl~HHPHqNllA  495 (508)
T KOG0275|consen  445 LSPKGEWIYCIG-E-DGVLYCFSVLSGKLERT------------LPVHEKDVIGLTHHPHQNLLA  495 (508)
T ss_pred             ecCCCcEEEEEc-c-CcEEEEEEeecCceeee------------eecccccccccccCcccchhh
Confidence            899999887654 3 34455555555555432            234566666666666655544

>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]

Probab=99.93  E-value=1.7e-23  Score=164.64  Aligned_cols=210  Identities=19%  Similarity=0.297  Sum_probs=160.0

Q ss_pred             cccccccceeEEEEcc-CCCEEEEeeCCCCeEEEeCCCCcEE----------E-----EecCCCCceEEEEECC-CCCeE
Q 021399            5 LMKGHERPLTYLKYNK-DGDLLFSCAKDHTPTVWFADNGERL----------G-----TYRGHNGAVWCCDVSR-DSMTL   67 (313)
Q Consensus         5 ~l~~h~~~v~~~~fs~-~g~~l~s~s~d~~i~iw~~~~~~~~----------~-----~~~~H~~~V~~~~~~~-~~~~l   67 (313)
                      ..+.|.++|+.|...+ .|++++||+.||.|-+||+++....          .     .-.+|+-+|..+-|-| |.-.|
T Consensus        38 ~~r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmF  117 (397)
T KOG4283|consen   38 FVRPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMF  117 (397)
T ss_pred             eeccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCcee
Confidence            3467999999999987 5899999999999999999865411          0     1136888899988877 44588


Q ss_pred             EEeeCCCcEEEEECCCCeEEEEecCCCCeeEEEeecCC---eEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecC
Q 021399           68 ITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGD---KLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKG  144 (313)
Q Consensus        68 ~s~s~D~~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  144 (313)
                      .|+|-|.++||||..+-+....+.+...+.+-.++|-.   .++++.++.     ..+++-++      .++.....+.|
T Consensus       118 tssSFDhtlKVWDtnTlQ~a~~F~me~~VYshamSp~a~sHcLiA~gtr~-----~~VrLCDi------~SGs~sH~LsG  186 (397)
T KOG4283|consen  118 TSSSFDHTLKVWDTNTLQEAVDFKMEGKVYSHAMSPMAMSHCLIAAGTRD-----VQVRLCDI------ASGSFSHTLSG  186 (397)
T ss_pred             ecccccceEEEeecccceeeEEeecCceeehhhcChhhhcceEEEEecCC-----CcEEEEec------cCCcceeeecc
Confidence            99999999999999999888888888777777777622   233332221     11222222      24555667899


Q ss_pred             CCCceEEEEEccCCCE-EEEeeCCCeEEEEECCCC-ceeeecc-----------cccCceeceEEEEECCCCCEEEEeeC
Q 021399          145 PQGRINRAVWGPLNRT-IISAGEDAIVRIWDTETG-KLLKESD-----------KETGHKKTITSLAKAADGSHFLTGSL  211 (313)
Q Consensus       145 ~~~~i~~~~~~~~~~~-i~t~~~d~~i~lwd~~~~-~~~~~~~-----------~~~~h~~~v~~~~~s~~~~~l~s~s~  211 (313)
                      |.+.|..+.|+|..++ +++|+.||.|++||++.. .++..+.           ....|.+.+..++|+.++.++++++.
T Consensus       187 Hr~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gt  266 (397)
T KOG4283|consen  187 HRDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGT  266 (397)
T ss_pred             ccCceEEEEeccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhhhhccC
Confidence            9999999999998765 578999999999998643 2332222           13468899999999999999999999


Q ss_pred             CCcEEEEECCCCcE
Q 021399          212 DKSAKLWDARTLEL  225 (313)
Q Consensus       212 dg~i~iwd~~~~~~  225 (313)
                      |..+++|+...|+.
T Consensus       267 d~r~r~wn~~~G~n  280 (397)
T KOG4283|consen  267 DDRIRVWNMESGRN  280 (397)
T ss_pred             ccceEEeecccCcc
Confidence            99999999988764

>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]

Probab=99.92  E-value=2.1e-22  Score=159.33  Aligned_cols=268  Identities=15%  Similarity=0.194  Sum_probs=195.9

Q ss_pred             cccceeEEEEccCCCEEEEeeCCCCeEEEeCCCCcEEEEecCCCCceEEEEECCCCCeEEEeeCCCcEEEEECCCCeEEE
Q 021399            9 HERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLF   88 (313)
Q Consensus         9 h~~~v~~~~fs~~g~~l~s~s~d~~i~iw~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~v~vWd~~~~~~~~   88 (313)
                      .++.|..+.|+|.+..|+.++.||.+++|++........+ -|.+++.+++|.++ ...++|+.||.|+.+|+.+++..+
T Consensus        12 P~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~~~-~~~~plL~c~F~d~-~~~~~G~~dg~vr~~Dln~~~~~~   89 (323)
T KOG1036|consen   12 PEDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLKLKF-KHGAPLLDCAFADE-STIVTGGLDGQVRRYDLNTGNEDQ   89 (323)
T ss_pred             ChhceeeEEEcCcCCcEEEEeccCcEEEEeccchhhhhhe-ecCCceeeeeccCC-ceEEEeccCceEEEEEecCCccee
Confidence            4778999999999999999999999999999887555444 38899999999875 468899999999999999998888


Q ss_pred             EecCCCCeeEEEeec-CCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEccCCCEEEEeeCC
Q 021399           89 TFNFDSPARSVDFAV-GDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGED  167 (313)
Q Consensus        89 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~t~~~d  167 (313)
                      ...+..++.++...+ .+.++.++.+..+.++....            ...+..+. ..++|.++.  -.++.|+.|+.|
T Consensus        90 igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~------------~~~~~~~d-~~kkVy~~~--v~g~~LvVg~~~  154 (323)
T KOG1036|consen   90 IGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRN------------KVVVGTFD-QGKKVYCMD--VSGNRLVVGTSD  154 (323)
T ss_pred             eccCCCceEEEEeeccCCeEEEcccCccEEEEeccc------------cccccccc-cCceEEEEe--ccCCEEEEeecC
Confidence            888888999998886 45666666665444332211            00111111 122455443  346789999999


Q ss_pred             CeEEEEECCCCceeeecccccCceeceEEEEECCCCCEEEEeeCCCcEEEEECCCCc----EEEEEe----------cCC
Q 021399          168 AIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLE----LIKTYV----------TER  233 (313)
Q Consensus       168 ~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~----~~~~~~----------~~~  233 (313)
                      ..+.+||+++...... ...++-+-.++|+++-|++.=.+++|.||.|.+=.++..+    .-..+.          .-.
T Consensus       155 r~v~iyDLRn~~~~~q-~reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~y  233 (323)
T KOG1036|consen  155 RKVLIYDLRNLDEPFQ-RRESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIY  233 (323)
T ss_pred             ceEEEEEcccccchhh-hccccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhceeEEeeecccCCceEEE
Confidence            9999999986543221 1224567789999999988889999999998875554431    111121          123


Q ss_pred             ceeEEEeccCCCEEEEcccccCceeEeeccCCCceeeeeeehhhhhhhccccccccceeEEEECCCCCeeEEEEE
Q 021399          234 PVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKRYGFLLL  308 (313)
Q Consensus       234 ~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~fspdgk~~~~~~~  308 (313)
                      ||++++|+|-.+.++++| .|+             .+.+||....+.+..+.....-|.+++|+-||..+|+-.+
T Consensus       234 PVNai~Fhp~~~tfaTgG-sDG-------------~V~~Wd~~~rKrl~q~~~~~~SI~slsfs~dG~~LAia~s  294 (323)
T KOG1036|consen  234 PVNAIAFHPIHGTFATGG-SDG-------------IVNIWDLFNRKRLKQLAKYETSISSLSFSMDGSLLAIASS  294 (323)
T ss_pred             EeceeEeccccceEEecC-CCc-------------eEEEccCcchhhhhhccCCCCceEEEEeccCCCeEEEEec
Confidence            799999999976665554 443             2456887777888877766777999999999999997654

>KOG1274 consensus WD40 repeat protein [General function prediction only]

Probab=99.92  E-value=1.1e-22  Score=181.25  Aligned_cols=275  Identities=17%  Similarity=0.245  Sum_probs=207.0

Q ss_pred             cccccceeEEEEccCCCEEEEeeCCCCeEEEeCCCC-cEEEEecCCCCceEEEEECCCCCeEEEeeCCCcEEEEECCCCe
Q 021399            7 KGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNG-ERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGA   85 (313)
Q Consensus         7 ~~h~~~v~~~~fs~~g~~l~s~s~d~~i~iw~~~~~-~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~v~vWd~~~~~   85 (313)
                      -+|+.+-+.++|.|+|++|++++.||.|++|+.... +...++.-|...|.+++..  ++.|++|+.+++|.++...+++
T Consensus        10 yaht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti~~~g~~v~~ia~~--s~~f~~~s~~~tv~~y~fps~~   87 (933)
T KOG1274|consen   10 YAHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPETIDISGELVSSIACY--SNHFLTGSEQNTVLRYKFPSGE   87 (933)
T ss_pred             hhccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccCCchhhccCceeEEEeec--ccceEEeeccceEEEeeCCCCC
Confidence            369999999999999999999999999999986655 4444455478888888764  4589999999999999998876


Q ss_pred             EEEE-ecCCCCeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEccCCCEEEEe
Q 021399           86 QLFT-FNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISA  164 (313)
Q Consensus        86 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~t~  164 (313)
                      .-.. ..+..++..+.+..+++.+++.++.+..     .+.+.      ........+.+|.++|.++.++|.++++|+.
T Consensus        88 ~~~iL~Rftlp~r~~~v~g~g~~iaagsdD~~v-----K~~~~------~D~s~~~~lrgh~apVl~l~~~p~~~fLAvs  156 (933)
T KOG1274|consen   88 EDTILARFTLPIRDLAVSGSGKMIAAGSDDTAV-----KLLNL------DDSSQEKVLRGHDAPVLQLSYDPKGNFLAVS  156 (933)
T ss_pred             ccceeeeeeccceEEEEecCCcEEEeecCceeE-----EEEec------cccchheeecccCCceeeeeEcCCCCEEEEE
Confidence            5432 2456788888888877777766553221     11110      0123456778999999999999999999999


Q ss_pred             eCCCeEEEEECCCCceeeecccccCc-----eeceEEEEECCCCCEEEEeeCCCcEEEEECCCCcEEEEEec---CCcee
Q 021399          165 GEDAIVRIWDTETGKLLKESDKETGH-----KKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVT---ERPVN  236 (313)
Q Consensus       165 ~~d~~i~lwd~~~~~~~~~~~~~~~h-----~~~v~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~---~~~~~  236 (313)
                      +-||.|++||+.++.+..+.......     ...+..++|+|+|..++..+.|+.|++|+..+.+....+..   .....
T Consensus       157 s~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr~~~~ss~~~  236 (933)
T KOG1274|consen  157 SCDGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKLRDKLSSSKFS  236 (933)
T ss_pred             ecCceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCceeheeecccccccceE
Confidence            99999999999988765443322111     23456789999999999999999999999999988877753   33488


Q ss_pred             EEEeccCCCEEEEcccccCceeEeeccCCCceeeeeeehhhhhhhccccccccceeEEEECCCCCeeEEEEEEEee
Q 021399          237 AVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKRYGFLLLQINV  312 (313)
Q Consensus       237 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~fspdgk~~~~~~~~~~~  312 (313)
                      .+.|+|.|.+++++.-+  +.+            .+||..+-.. ++   -...|.+++|.|++..+.|.+++++.
T Consensus       237 ~~~wsPnG~YiAAs~~~--g~I------------~vWnv~t~~~-~~---~~~~Vc~~aw~p~~n~it~~~~~g~~  294 (933)
T KOG1274|consen  237 DLQWSPNGKYIAASTLD--GQI------------LVWNVDTHER-HE---FKRAVCCEAWKPNANAITLITALGTL  294 (933)
T ss_pred             EEEEcCCCcEEeeeccC--CcE------------EEEecccchh-cc---ccceeEEEecCCCCCeeEEEeecccc
Confidence            89999999988765432  223            3444433111 11   24699999999999999999998864

>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]

Probab=99.92  E-value=4.9e-24  Score=176.34  Aligned_cols=248  Identities=23%  Similarity=0.322  Sum_probs=178.6

Q ss_pred             cccccceeEEEEccCCC-EEEEeeCCCCeEEEeCCCCcE----------EEEecCCCCceEEEEECCCCC-eEEEeeCCC
Q 021399            7 KGHERPLTYLKYNKDGD-LLFSCAKDHTPTVWFADNGER----------LGTYRGHNGAVWCCDVSRDSM-TLITGSADQ   74 (313)
Q Consensus         7 ~~h~~~v~~~~fs~~g~-~l~s~s~d~~i~iw~~~~~~~----------~~~~~~H~~~V~~~~~~~~~~-~l~s~s~D~   74 (313)
                      -.|.+.|+.+++-|... .+++.+..+.|.|||..+..-          -.++.+|+++=++++|++... .+++++.|+
T Consensus       121 i~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d~  200 (422)
T KOG0264|consen  121 INHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSDDH  200 (422)
T ss_pred             ccCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEeeccCCC
Confidence            35888999999999875 555567889999999774321          127899999888899998654 789999999


Q ss_pred             cEEEEECCCCeEEEEecCCCCeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEE
Q 021399           75 TAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVW  154 (313)
Q Consensus        75 ~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~  154 (313)
                      +|++||+......                                             .....+...+.+|...|..++|
T Consensus       201 ~i~lwdi~~~~~~---------------------------------------------~~~~~p~~~~~~h~~~VeDV~~  235 (422)
T KOG0264|consen  201 TICLWDINAESKE---------------------------------------------DKVVDPKTIFSGHEDVVEDVAW  235 (422)
T ss_pred             cEEEEeccccccC---------------------------------------------CccccceEEeecCCcceehhhc
Confidence            9999998643210                                             0011234566789999999999


Q ss_pred             ccCC-CEEEEeeCCCeEEEEECCCCceeeecccccCceeceEEEEECCC-CCEEEEeeCCCcEEEEECCCC-cEEEEEe-
Q 021399          155 GPLN-RTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAAD-GSHFLTGSLDKSAKLWDARTL-ELIKTYV-  230 (313)
Q Consensus       155 ~~~~-~~i~t~~~d~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~-~~~l~s~s~dg~i~iwd~~~~-~~~~~~~-  230 (313)
                      ++.. ..|+++++|+.+.|||++++ ..+......+|...+.|++|.|- +..|||||.|++|.+||+|.. +++.++. 
T Consensus       236 h~~h~~lF~sv~dd~~L~iwD~R~~-~~~~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~  314 (422)
T KOG0264|consen  236 HPLHEDLFGSVGDDGKLMIWDTRSN-TSKPSHSVKAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNKPLHTFEG  314 (422)
T ss_pred             cccchhhheeecCCCeEEEEEcCCC-CCCCcccccccCCceeEEEeCCCCCceEEeccCCCcEEEeechhcccCceeccC
Confidence            9864 57889999999999999963 22222334579999999999985 556889999999999999985 4555554 


Q ss_pred             cCCceeEEEeccCCCEEEEcccccCceeEeeccCCCceeeeeeehhh---hhhhccccccccceeEEEECCCCCe
Q 021399          231 TERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKIL---QEEIGGVKGHFGPINALAFNPDGKR  302 (313)
Q Consensus       231 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~h~~~V~~~~fspdgk~  302 (313)
                      +...+..|.|+|....+++++|.|.. +-+||...-.-+. -++...   .+.+-.--||...|.++.|+|+.-.
T Consensus       315 H~dev~~V~WSPh~etvLASSg~D~r-l~vWDls~ig~eq-~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW  387 (422)
T KOG0264|consen  315 HEDEVFQVEWSPHNETVLASSGTDRR-LNVWDLSRIGEEQ-SPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPW  387 (422)
T ss_pred             CCcceEEEEeCCCCCceeEecccCCc-EEEEecccccccc-ChhhhccCCcceeEEecCcccccccccCCCCCCe
Confidence            45679999999999999988876643 3445532211111 011111   1112234589999999999999655

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=99.92  E-value=4.9e-22  Score=168.17  Aligned_cols=266  Identities=17%  Similarity=0.143  Sum_probs=180.0

Q ss_pred             ccccccceeEEEEccCCCEE-EEeeCCCCeEEEeCCCCcEEEEecCCCCceEEEEECCCCCeEE-EeeCCCcEEEEECCC
Q 021399            6 MKGHERPLTYLKYNKDGDLL-FSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLI-TGSADQTAKLWNVET   83 (313)
Q Consensus         6 l~~h~~~v~~~~fs~~g~~l-~s~s~d~~i~iw~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~-s~s~D~~v~vWd~~~   83 (313)
                      +.+|. .+.+++|+|+|+.+ ++++.|+.|++||..+++....+..+.. +..++|+|+++.++ +++.|+.+++||+.+
T Consensus        27 ~~~~~-~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~-~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~  104 (300)
T TIGR03866        27 FPVGQ-RPRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLPSGPD-PELFALHPNGKILYIANEDDNLVTVIDIET  104 (300)
T ss_pred             EECCC-CCCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEeccCCCC-ccEEEECCCCCEEEEEcCCCCeEEEEECCC
Confidence            34443 46789999999977 5677889999999999988877776544 46788999998664 556789999999998


Q ss_pred             CeEEEEecCCCCeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEccCCCEEEE
Q 021399           84 GAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIIS  163 (313)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~t  163 (313)
                      .+.+..+........+.+.+++..++.......    ....++.      .......... .......+.|+|+++.++.
T Consensus       105 ~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~----~~~~~d~------~~~~~~~~~~-~~~~~~~~~~s~dg~~l~~  173 (300)
T TIGR03866       105 RKVLAEIPVGVEPEGMAVSPDGKIVVNTSETTN----MAHFIDT------KTYEIVDNVL-VDQRPRFAEFTADGKELWV  173 (300)
T ss_pred             CeEEeEeeCCCCcceEEECCCCCEEEEEecCCC----eEEEEeC------CCCeEEEEEE-cCCCccEEEECCCCCEEEE
Confidence            877666654445567888887776655432100    0111111      1111211111 1223467889999988754


Q ss_pred             -eeCCCeEEEEECCCCceeeeccccc--Cc--eeceEEEEECCCCCEEEE-eeCCCcEEEEECCCCcEEEEEecCCceeE
Q 021399          164 -AGEDAIVRIWDTETGKLLKESDKET--GH--KKTITSLAKAADGSHFLT-GSLDKSAKLWDARTLELIKTYVTERPVNA  237 (313)
Q Consensus       164 -~~~d~~i~lwd~~~~~~~~~~~~~~--~h--~~~v~~~~~s~~~~~l~s-~s~dg~i~iwd~~~~~~~~~~~~~~~~~~  237 (313)
                       +..++.|++||+.+++.+..+....  .+  ......++++|++++++. .+.++.+.+||+++++.+..+.....+.+
T Consensus       174 ~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~  253 (300)
T TIGR03866       174 SSEIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAVVDAKTYEVLDYLLVGQRVWQ  253 (300)
T ss_pred             EcCCCCEEEEEEcCcceeeeeeeecccccccccCCccceEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEEeCCCcce
Confidence             4568999999999887665443110  01  112356889999998554 44567899999999988776665667889


Q ss_pred             EEeccCCCEEEEcccccCceeEeeccCCCceeeeeeehhhhhhhccccccccceeEEEECC
Q 021399          238 VTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNP  298 (313)
Q Consensus       238 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~fsp  298 (313)
                      ++|+|+++.++++.+.++             ++.+||..+++.+..+... +..+.|+|+|
T Consensus       254 ~~~~~~g~~l~~~~~~~~-------------~i~v~d~~~~~~~~~~~~~-~~~~~~~~~~  300 (300)
T TIGR03866       254 LAFTPDEKYLLTTNGVSN-------------DVSVIDVAALKVIKSIKVG-RLPWGVVVRP  300 (300)
T ss_pred             EEECCCCCEEEEEcCCCC-------------eEEEEECCCCcEEEEEEcc-cccceeEeCC
Confidence            999999998887654332             3456666666666666543 5558999886

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>KOG0283 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.92  E-value=1e-23  Score=186.38  Aligned_cols=201  Identities=23%  Similarity=0.349  Sum_probs=161.5

Q ss_pred             cccccccceeEEEEccCCCEEEEeeCCCCeEEEeCCCCcEEEEecCCCCceEEEEECC-CCCeEEEeeCCCcEEEEECCC
Q 021399            5 LMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSR-DSMTLITGSADQTAKLWNVET   83 (313)
Q Consensus         5 ~l~~h~~~v~~~~fs~~g~~l~s~s~d~~i~iw~~~~~~~~~~~~~H~~~V~~~~~~~-~~~~l~s~s~D~~v~vWd~~~   83 (313)
                      .++||.+.|..|.||.+ .+|+|+|-|++||+|+....+++++|. |...|+|++|+| |.++|+||+-|++||||++.+
T Consensus       364 ef~GHt~DILDlSWSKn-~fLLSSSMDKTVRLWh~~~~~CL~~F~-HndfVTcVaFnPvDDryFiSGSLD~KvRiWsI~d  441 (712)
T KOG0283|consen  364 EFKGHTADILDLSWSKN-NFLLSSSMDKTVRLWHPGRKECLKVFS-HNDFVTCVAFNPVDDRYFISGSLDGKVRLWSISD  441 (712)
T ss_pred             hhhccchhheecccccC-CeeEeccccccEEeecCCCcceeeEEe-cCCeeEEEEecccCCCcEeecccccceEEeecCc
Confidence            78999999999999965 599999999999999999999999995 999999999999 567999999999999999876


Q ss_pred             CeEEEEecCCCCeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEccCCCEEEE
Q 021399           84 GAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIIS  163 (313)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~t  163 (313)
                      .+.+.                                                     +..-..-|+.+++.|+|+..+.
T Consensus       442 ~~Vv~-----------------------------------------------------W~Dl~~lITAvcy~PdGk~avI  468 (712)
T KOG0283|consen  442 KKVVD-----------------------------------------------------WNDLRDLITAVCYSPDGKGAVI  468 (712)
T ss_pred             CeeEe-----------------------------------------------------ehhhhhhheeEEeccCCceEEE
Confidence            54321                                                     0111235788999999999999


Q ss_pred             eeCCCeEEEEECCCCceeeecccc------cCceeceEEEEECCCC-CEEEEeeCCCcEEEEECCCCcEEEEEec---CC
Q 021399          164 AGEDAIVRIWDTETGKLLKESDKE------TGHKKTITSLAKAADG-SHFLTGSLDKSAKLWDARTLELIKTYVT---ER  233 (313)
Q Consensus       164 ~~~d~~i~lwd~~~~~~~~~~~~~------~~h~~~v~~~~~s~~~-~~l~s~s~dg~i~iwd~~~~~~~~~~~~---~~  233 (313)
                      |+.+|.+++|++..-+........      ..|. .|+.+.|.|.. +.++..+.|..|||+|.++..++..+..   ..
T Consensus       469 Gt~~G~C~fY~t~~lk~~~~~~I~~~~~Kk~~~~-rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~~  547 (712)
T KOG0283|consen  469 GTFNGYCRFYDTEGLKLVSDFHIRLHNKKKKQGK-RITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFRNTS  547 (712)
T ss_pred             EEeccEEEEEEccCCeEEEeeeEeeccCccccCc-eeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhcccccCC
Confidence            999999999998876654432211      1133 79999888643 3588889999999999988777777653   33


Q ss_pred             ceeEEEeccCCCEEEEcccccCceeEeecc
Q 021399          234 PVNAVTMSPLLDHVVLGGGQDASAVTTTDH  263 (313)
Q Consensus       234 ~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~  263 (313)
                      .....+|+.+|.+++.++  ++..||+|+.
T Consensus       548 SQ~~Asfs~Dgk~IVs~s--eDs~VYiW~~  575 (712)
T KOG0283|consen  548 SQISASFSSDGKHIVSAS--EDSWVYIWKN  575 (712)
T ss_pred             cceeeeEccCCCEEEEee--cCceEEEEeC
Confidence            456788999999988765  6777888874

>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.92  E-value=5.7e-23  Score=162.04  Aligned_cols=239  Identities=18%  Similarity=0.271  Sum_probs=168.1

Q ss_pred             CcccccccccceeEEEEccCCCEEEEeeCCCCeEEEeCCCCcEEEEecCCCCceEEEEECCCCC--eEEEeeCCCcEEEE
Q 021399            2 RPILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSM--TLITGSADQTAKLW   79 (313)
Q Consensus         2 ~~~~l~~h~~~v~~~~fs~~g~~l~s~s~d~~i~iw~~~~~~~~~~~~~H~~~V~~~~~~~~~~--~l~s~s~D~~v~vW   79 (313)
                      .|.....|.++|.+++|+.||..+++|+.|+.+++||+.++ +..++..|.++|.++.|-+...  .|+|||.|+++|.|
T Consensus        64 ~~ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~-Q~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfW  142 (347)
T KOG0647|consen   64 VPKAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLASG-QVSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFW  142 (347)
T ss_pred             cchhhhccCCCeEEEEEccCCceEEeeccCCceEEEEccCC-CeeeeeecccceeEEEEecCCCcceeEecccccceeec
Confidence            36678889999999999999999999999999999999999 5668889999999999976544  89999999999999


Q ss_pred             ECCCCeEEEEecCCCCeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCC-CCceEEEEEccCC
Q 021399           80 NVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGP-QGRINRAVWGPLN  158 (313)
Q Consensus        80 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~~~~~  158 (313)
                      |++...++.++........++...  .++++.+..     ..+.++.+...+..     ....+.+ .-.+.+++..++.
T Consensus       143 D~R~~~pv~t~~LPeRvYa~Dv~~--pm~vVata~-----r~i~vynL~n~~te-----~k~~~SpLk~Q~R~va~f~d~  210 (347)
T KOG0647|consen  143 DTRSSNPVATLQLPERVYAADVLY--PMAVVATAE-----RHIAVYNLENPPTE-----FKRIESPLKWQTRCVACFQDK  210 (347)
T ss_pred             ccCCCCeeeeeeccceeeehhccC--ceeEEEecC-----CcEEEEEcCCCcch-----hhhhcCcccceeeEEEEEecC
Confidence            999888877766544444333222  222222110     11111111111100     0000111 1235677777777


Q ss_pred             CEEEEeeCCCeEEEEECCCCceeeecccccCce---------eceEEEEECCCCCEEEEeeCCCcEEEEECCCCcEEEEE
Q 021399          159 RTIISAGEDAIVRIWDTETGKLLKESDKETGHK---------KTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTY  229 (313)
Q Consensus       159 ~~i~t~~~d~~i~lwd~~~~~~~~~~~~~~~h~---------~~v~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~  229 (313)
                      ..++.|+-.|++.+-.+..+.....+. ...|+         ..|++++|+|....|++++.||+..+||-+....+.+.
T Consensus       211 ~~~alGsiEGrv~iq~id~~~~~~nFt-FkCHR~~~~~~~~VYaVNsi~FhP~hgtlvTaGsDGtf~FWDkdar~kLk~s  289 (347)
T KOG0647|consen  211 DGFALGSIEGRVAIQYIDDPNPKDNFT-FKCHRSTNSVNDDVYAVNSIAFHPVHGTLVTAGSDGTFSFWDKDARTKLKTS  289 (347)
T ss_pred             CceEeeeecceEEEEecCCCCccCcee-EEEeccCCCCCCceEEecceEeecccceEEEecCCceEEEecchhhhhhhcc
Confidence            777999999999998876642211110 11222         35788999999999999999999999998776555554


Q ss_pred             -ecCCceeEEEeccCCCEEEEccccc
Q 021399          230 -VTERPVNAVTMSPLLDHVVLGGGQD  254 (313)
Q Consensus       230 -~~~~~~~~~~~~p~~~~~~~~~~~~  254 (313)
                       .++++|.+.+|+.+|...+-+-|.|
T Consensus       290 ~~~~qpItcc~fn~~G~ifaYA~gYD  315 (347)
T KOG0647|consen  290 ETHPQPITCCSFNRNGSIFAYALGYD  315 (347)
T ss_pred             CcCCCccceeEecCCCCEEEEEeecc
Confidence             4678999999999999877766544

>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.92  E-value=3.2e-25  Score=192.65  Aligned_cols=190  Identities=27%  Similarity=0.418  Sum_probs=168.1

Q ss_pred             ccccccceeEEEEccCCCEEEEeeCCCCeEEEeCCCCcEEEEecCCCCceEEEEECCCCCeEEEeeCCCcEEEEECCCCe
Q 021399            6 MKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGA   85 (313)
Q Consensus         6 l~~h~~~v~~~~fs~~g~~l~s~s~d~~i~iw~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~v~vWd~~~~~   85 (313)
                      |.+|+.+|.|+.|+++..+|+.|+.+|+|++||++.++.++++.||...+.+++|+|-+.++++|+.|...++||++...
T Consensus        66 ~~~hespIeSl~f~~~E~LlaagsasgtiK~wDleeAk~vrtLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~G  145 (825)
T KOG0267|consen   66 LTGHESPIESLTFDTSERLLAAGSASGTIKVWDLEEAKIVRTLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRKKG  145 (825)
T ss_pred             eeccCCcceeeecCcchhhhcccccCCceeeeehhhhhhhhhhhccccCcceeeeccceEEeccccccccceehhhhccC
Confidence            68999999999999999999999999999999999999999999999999999999999999999999999999987543


Q ss_pred             EEEEecCCCCeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEccCCCEEEEee
Q 021399           86 QLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAG  165 (313)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~t~~  165 (313)
                      +...                                                    ..+|...+..+.|+|+|++++.++
T Consensus       146 c~~~----------------------------------------------------~~s~~~vv~~l~lsP~Gr~v~~g~  173 (825)
T KOG0267|consen  146 CSHT----------------------------------------------------YKSHTRVVDVLRLSPDGRWVASGG  173 (825)
T ss_pred             ceee----------------------------------------------------ecCCcceeEEEeecCCCceeeccC
Confidence            3322                                                    234556677888999999999999


Q ss_pred             CCCeEEEEECCCCceeeecccccCceeceEEEEECCCCCEEEEeeCCCcEEEEECCCCcEEEEEec-CCceeEEEeccCC
Q 021399          166 EDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVT-ERPVNAVTMSPLL  244 (313)
Q Consensus       166 ~d~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~-~~~~~~~~~~p~~  244 (313)
                      +|..+++||...++.+.++.   +|...+.++.|+|..-.+++||.|+++++||+++.+.+..... ...+.+.+|+|++
T Consensus       174 ed~tvki~d~~agk~~~ef~---~~e~~v~sle~hp~e~Lla~Gs~d~tv~f~dletfe~I~s~~~~~~~v~~~~fn~~~  250 (825)
T KOG0267|consen  174 EDNTVKIWDLTAGKLSKEFK---SHEGKVQSLEFHPLEVLLAPGSSDRTVRFWDLETFEVISSGKPETDGVRSLAFNPDG  250 (825)
T ss_pred             Ccceeeeecccccccccccc---cccccccccccCchhhhhccCCCCceeeeeccceeEEeeccCCccCCceeeeecCCc
Confidence            99999999999999887775   5889999999999999999999999999999999988877653 4568999999998


Q ss_pred             CEEEEc
Q 021399          245 DHVVLG  250 (313)
Q Consensus       245 ~~~~~~  250 (313)
                      ..++.+
T Consensus       251 ~~~~~G  256 (825)
T KOG0267|consen  251 KIVLSG  256 (825)
T ss_pred             eeeecC
Confidence            765543

>KOG0641 consensus WD40 repeat protein [General function prediction only]

Probab=99.92  E-value=2e-21  Score=147.76  Aligned_cols=275  Identities=18%  Similarity=0.256  Sum_probs=188.4

Q ss_pred             cccceeEEEEccCCCEEEEeeCCCCeEEEeCC---CC------------cEEEEecCCCCceEEEEECCCCCeEEEeeCC
Q 021399            9 HERPLTYLKYNKDGDLLFSCAKDHTPTVWFAD---NG------------ERLGTYRGHNGAVWCCDVSRDSMTLITGSAD   73 (313)
Q Consensus         9 h~~~v~~~~fs~~g~~l~s~s~d~~i~iw~~~---~~------------~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D   73 (313)
                      -.+.|..++|+|.|.+.+.||..++.||.-..   +.            ...+..+-|+++|.|.+|+|+|++++||+.|
T Consensus        31 dsqairav~fhp~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~~geliatgsnd  110 (350)
T KOG0641|consen   31 DSQAIRAVAFHPAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSPCGELIATGSND  110 (350)
T ss_pred             chhheeeEEecCCCceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEecCccCeEEecCCC
Confidence            35678899999999999999999999987322   11            1234557799999999999999999999999


Q ss_pred             CcEEEEECCCCeEE-----EEec-CCCCeeEEEeecC----CeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEec
Q 021399           74 QTAKLWNVETGAQL-----FTFN-FDSPARSVDFAVG----DKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILK  143 (313)
Q Consensus        74 ~~v~vWd~~~~~~~-----~~~~-~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  143 (313)
                      ++||+--.....+.     ..++ +...+..+.|..+    +.+++....      +..+.+-.    .-..+.....+.
T Consensus       111 k~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~ga------gdc~iy~t----dc~~g~~~~a~s  180 (350)
T KOG0641|consen  111 KTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGA------GDCKIYIT----DCGRGQGFHALS  180 (350)
T ss_pred             ceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCC------CcceEEEe----ecCCCCcceeec
Confidence            99999765432221     1122 3456666766542    222222111      01111100    012345566778


Q ss_pred             CCCCceEEEEEccCCCEEEEeeCCCeEEEEECCCCceeeeccccc----CceeceEEEEECCCCCEEEEeeCCCcEEEEE
Q 021399          144 GPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKET----GHKKTITSLAKAADGSHFLTGSLDKSAKLWD  219 (313)
Q Consensus       144 ~~~~~i~~~~~~~~~~~i~t~~~d~~i~lwd~~~~~~~~~~~~~~----~h~~~v~~~~~s~~~~~l~s~s~dg~i~iwd  219 (313)
                      +|.+.|..+. +=++..|++|+.|.+|+.||++-..++..+....    -.+..|.+++..|.|..|++|-.|..+.+||
T Consensus       181 ghtghilaly-swn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgrll~sg~~dssc~lyd  259 (350)
T KOG0641|consen  181 GHTGHILALY-SWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGHADSSCMLYD  259 (350)
T ss_pred             CCcccEEEEE-EecCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcceeeeccCCCceEEEE
Confidence            8988886553 2245789999999999999998877776653211    1246799999999999999999999999999


Q ss_pred             CCCCcEEEEEe-cCCceeEEEeccCCCEEEEcccccCceeEeeccCCCceeeeeeehhhhhhhccccccccceeEEEECC
Q 021399          220 ARTLELIKTYV-TERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNP  298 (313)
Q Consensus       220 ~~~~~~~~~~~-~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~fsp  298 (313)
                      ++.+..++.+. +...++++-|+|...+++++ +.| ..+.+.|.+.        |....-++...-.|...+..+.|+|
T Consensus       260 irg~r~iq~f~phsadir~vrfsp~a~yllt~-syd-~~ikltdlqg--------dla~el~~~vv~ehkdk~i~~rwh~  329 (350)
T KOG0641|consen  260 IRGGRMIQRFHPHSADIRCVRFSPGAHYLLTC-SYD-MKIKLTDLQG--------DLAHELPIMVVAEHKDKAIQCRWHP  329 (350)
T ss_pred             eeCCceeeeeCCCccceeEEEeCCCceEEEEe-ccc-ceEEEeeccc--------chhhcCceEEEEeccCceEEEEecC
Confidence            99999999985 45679999999988887764 333 3344445432        1111122223345777788888988


Q ss_pred             CCCeeEEE
Q 021399          299 DGKRYGFL  306 (313)
Q Consensus       299 dgk~~~~~  306 (313)
                      .  .|.|+
T Consensus       330 ~--d~sfi  335 (350)
T KOG0641|consen  330 Q--DFSFI  335 (350)
T ss_pred             c--cceee
Confidence            7  45554

>KOG0289 consensus mRNA splicing factor [General function prediction only]

Probab=99.92  E-value=8.7e-23  Score=168.13  Aligned_cols=231  Identities=22%  Similarity=0.301  Sum_probs=185.2

Q ss_pred             cccceeEEEEccCCCEEEEeeCCCCeEEEeCCCCcEEEEecCCCCceEEEEECCCCCeEEEeeCCCcEEEEECCCCeEEE
Q 021399            9 HERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLF   88 (313)
Q Consensus         9 h~~~v~~~~fs~~g~~l~s~s~d~~i~iw~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~v~vWd~~~~~~~~   88 (313)
                      ....+..+...|....+++|+.|..+.++|...++.+.+|+||...|+.+.++|+...+++++.|..|+||........ 
T Consensus       218 ~~pgi~ald~~~s~~~ilTGG~d~~av~~d~~s~q~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s~~-  296 (506)
T KOG0289|consen  218 STPGITALDIIPSSSKILTGGEDKTAVLFDKPSNQILATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSSEP-  296 (506)
T ss_pred             CCCCeeEEeecCCCCcceecCCCCceEEEecchhhhhhhccCcceEEEEEEeccchhheeecCCcceEEeeccccccCc-
Confidence            3445666766676689999999999999999999999999999999999999999999999999999999987543211 


Q ss_pred             EecCCCCeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEccCCCEEEEeeCCC
Q 021399           89 TFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDA  168 (313)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~t~~~d~  168 (313)
                                                                         .....|.++|+.+..+|.|+||+++++|+
T Consensus       297 ---------------------------------------------------~~~~~h~~~V~~ls~h~tgeYllsAs~d~  325 (506)
T KOG0289|consen  297 ---------------------------------------------------TSSRPHEEPVTGLSLHPTGEYLLSASNDG  325 (506)
T ss_pred             ---------------------------------------------------cccccccccceeeeeccCCcEEEEecCCc
Confidence                                                               11234678899999999999999999999


Q ss_pred             eEEEEECCCCceeeecccccCceeceEEEEECCCCCEEEEeeCCCcEEEEECCCCcEEEEEe-cCCceeEEEeccCCCEE
Q 021399          169 IVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYV-TERPVNAVTMSPLLDHV  247 (313)
Q Consensus       169 ~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~-~~~~~~~~~~~p~~~~~  247 (313)
                      +...-|.+++..+...... .-.-.+++.+|+|||..+.+|..|+.+++||+.++..+..+. +..+|.+++|+..|-++
T Consensus       326 ~w~Fsd~~~g~~lt~vs~~-~s~v~~ts~~fHpDgLifgtgt~d~~vkiwdlks~~~~a~Fpght~~vk~i~FsENGY~L  404 (506)
T KOG0289|consen  326 TWAFSDISSGSQLTVVSDE-TSDVEYTSAAFHPDGLIFGTGTPDGVVKIWDLKSQTNVAKFPGHTGPVKAISFSENGYWL  404 (506)
T ss_pred             eEEEEEccCCcEEEEEeec-cccceeEEeeEcCCceEEeccCCCceEEEEEcCCccccccCCCCCCceeEEEeccCceEE
Confidence            9999999999887654321 223458999999999999999999999999999998887775 56789999999999888


Q ss_pred             EEcccccCceeEeeccCCCceeeeeeehhhhhhhcccc-ccccceeEEEECCCCCeeEEE
Q 021399          248 VLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVK-GHFGPINALAFNPDGKRYGFL  306 (313)
Q Consensus       248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~V~~~~fspdgk~~~~~  306 (313)
                      ++++. |+ .+..||.|+-+.            +..+. .-...|.++.|.+.|+++++-
T Consensus       405 at~ad-d~-~V~lwDLRKl~n------------~kt~~l~~~~~v~s~~fD~SGt~L~~~  450 (506)
T KOG0289|consen  405 ATAAD-DG-SVKLWDLRKLKN------------FKTIQLDEKKEVNSLSFDQSGTYLGIA  450 (506)
T ss_pred             EEEec-CC-eEEEEEehhhcc------------cceeeccccccceeEEEcCCCCeEEee
Confidence            77653 32 366777665331            12111 112378999999999998875

>KOG0294 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.91  E-value=1.2e-22  Score=161.09  Aligned_cols=226  Identities=19%  Similarity=0.300  Sum_probs=174.7

Q ss_pred             cccccccceeEEEEccCCCEEEEeeCCCCeEEEeCCCCcEEEEecCCCCceEEEEECCCCC--eEEEeeCCCcEEEEECC
Q 021399            5 LMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSM--TLITGSADQTAKLWNVE   82 (313)
Q Consensus         5 ~l~~h~~~v~~~~fs~~g~~l~s~s~d~~i~iw~~~~~~~~~~~~~H~~~V~~~~~~~~~~--~l~s~s~D~~v~vWd~~   82 (313)
                      .+..|..++++|+.  +|.++||||.|.+|+|||.....++..+-.|.+.|+++.|.++-.  .|++|+.||.|.+|+..
T Consensus        38 ~~~aH~~sitavAV--s~~~~aSGssDetI~IYDm~k~~qlg~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~  115 (362)
T KOG0294|consen   38 AFSAHAGSITALAV--SGPYVASGSSDETIHIYDMRKRKQLGILLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVG  115 (362)
T ss_pred             cccccccceeEEEe--cceeEeccCCCCcEEEEeccchhhhcceeccccceEEEEecCCcchhheeeecCCCcEEEEEcC
Confidence            56789999999987  599999999999999999999999999999999999999988654  89999999999999977


Q ss_pred             CCeEEEEecCCCCeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEccCCCEEE
Q 021399           83 TGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTII  162 (313)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~  162 (313)
                      ..++                                                    +..+++|.+.|+.+..+|.++.-+
T Consensus       116 ~W~~----------------------------------------------------~~slK~H~~~Vt~lsiHPS~KLAL  143 (362)
T KOG0294|consen  116 SWEL----------------------------------------------------LKSLKAHKGQVTDLSIHPSGKLAL  143 (362)
T ss_pred             CeEE----------------------------------------------------eeeecccccccceeEecCCCceEE
Confidence            6432                                                    234567888899999999999999


Q ss_pred             EeeCCCeEEEEECCCCceeeecccccCceeceEEEEECCCCCEEEEeeCCCcEEEEECCCCcEEEEEecCCceeEEEecc
Q 021399          163 SAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTERPVNAVTMSP  242 (313)
Q Consensus       163 t~~~d~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~p  242 (313)
                      +.+.|+.+++||+-.++.-....    -....+.+.|+|.|.+++.++.+ .|-+|.+++-.....+..+..+.++-|  
T Consensus       144 sVg~D~~lr~WNLV~Gr~a~v~~----L~~~at~v~w~~~Gd~F~v~~~~-~i~i~q~d~A~v~~~i~~~~r~l~~~~--  216 (362)
T KOG0294|consen  144 SVGGDQVLRTWNLVRGRVAFVLN----LKNKATLVSWSPQGDHFVVSGRN-KIDIYQLDNASVFREIENPKRILCATF--  216 (362)
T ss_pred             EEcCCceeeeehhhcCccceeec----cCCcceeeEEcCCCCEEEEEecc-EEEEEecccHhHhhhhhccccceeeee--
Confidence            99999999999987765322111    12233448999999998888876 588999988777666654444445444  


Q ss_pred             CCCEEEEcccccCceeEeeccCCCceeeeeeehhhhhhhccccccccceeEEEE--CCCCCeeE
Q 021399          243 LLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAF--NPDGKRYG  304 (313)
Q Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~f--spdgk~~~  304 (313)
                      .....++.|+++.             .+++||.....++..+.+|..+|-++++  +|++.+++
T Consensus       217 l~~~~L~vG~d~~-------------~i~~~D~ds~~~~~~~~AH~~RVK~i~~~~~~~~~~lv  267 (362)
T KOG0294|consen  217 LDGSELLVGGDNE-------------WISLKDTDSDTPLTEFLAHENRVKDIASYTNPEHEYLV  267 (362)
T ss_pred             cCCceEEEecCCc-------------eEEEeccCCCccceeeecchhheeeeEEEecCCceEEE
Confidence            3333444445443             3567887778888899999999998883  44454443

>KOG0641 consensus WD40 repeat protein [General function prediction only]

Probab=99.91  E-value=8e-22  Score=149.92  Aligned_cols=196  Identities=19%  Similarity=0.247  Sum_probs=138.9

Q ss_pred             cccccceeEEEEccCCCEEEEeeCCCCeEEEeCCCCcE------------------------------------------
Q 021399            7 KGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGER------------------------------------------   44 (313)
Q Consensus         7 ~~h~~~v~~~~fs~~g~~l~s~s~d~~i~iw~~~~~~~------------------------------------------   44 (313)
                      +.|+++|+|.+|||.|++|++||.|++|++..++..+.                                          
T Consensus        86 khhkgsiyc~~ws~~geliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~i  165 (350)
T KOG0641|consen   86 KHHKGSIYCTAWSPCGELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKI  165 (350)
T ss_pred             cccCccEEEEEecCccCeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceE
Confidence            56899999999999999999999999999875543211                                          


Q ss_pred             ----------EEEecCCCCceEEEEECCCCCeEEEeeCCCcEEEEECCCCeEEEEecCCCCeeEEEeecCCeEEEEECCC
Q 021399           45 ----------LGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDP  114 (313)
Q Consensus        45 ----------~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  114 (313)
                                .+.+.+|.+-|.++. +=+|-.|++|++|.+|+.||++-..++.++...                     
T Consensus       166 y~tdc~~g~~~~a~sghtghilaly-swn~~m~~sgsqdktirfwdlrv~~~v~~l~~~---------------------  223 (350)
T KOG0641|consen  166 YITDCGRGQGFHALSGHTGHILALY-SWNGAMFASGSQDKTIRFWDLRVNSCVNTLDND---------------------  223 (350)
T ss_pred             EEeecCCCCcceeecCCcccEEEEE-EecCcEEEccCCCceEEEEeeeccceeeeccCc---------------------
Confidence                      122345666665543 113456777777777777776644433222100                     


Q ss_pred             ceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEccCCCEEEEeeCCCeEEEEECCCCceeeecccccCceece
Q 021399          115 FMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTI  194 (313)
Q Consensus       115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~t~~~d~~i~lwd~~~~~~~~~~~~~~~h~~~v  194 (313)
                                      ..+.+        .-.+.+..++..|.|+.+++|-.|...-+||++-+.+++++.   .|...|
T Consensus       224 ----------------~~~~g--------lessavaav~vdpsgrll~sg~~dssc~lydirg~r~iq~f~---phsadi  276 (350)
T KOG0641|consen  224 ----------------FHDGG--------LESSAVAAVAVDPSGRLLASGHADSSCMLYDIRGGRMIQRFH---PHSADI  276 (350)
T ss_pred             ----------------ccCCC--------cccceeEEEEECCCcceeeeccCCCceEEEEeeCCceeeeeC---CCccce
Confidence                            00000        012467888999999999999999999999999999988775   589999


Q ss_pred             EEEEECCCCCEEEEeeCCCcEEEEECCCC----cEEEEE-ecCCceeEEEeccCCCEEEEcc
Q 021399          195 TSLAKAADGSHFLTGSLDKSAKLWDARTL----ELIKTY-VTERPVNAVTMSPLLDHVVLGG  251 (313)
Q Consensus       195 ~~~~~s~~~~~l~s~s~dg~i~iwd~~~~----~~~~~~-~~~~~~~~~~~~p~~~~~~~~~  251 (313)
                      +++.|+|...++++++.|..|++-|+..-    .++-.. .+...+..+-|+|..-..+.+.
T Consensus       277 r~vrfsp~a~yllt~syd~~ikltdlqgdla~el~~~vv~ehkdk~i~~rwh~~d~sfisss  338 (350)
T KOG0641|consen  277 RCVRFSPGAHYLLTCSYDMKIKLTDLQGDLAHELPIMVVAEHKDKAIQCRWHPQDFSFISSS  338 (350)
T ss_pred             eEEEeCCCceEEEEecccceEEEeecccchhhcCceEEEEeccCceEEEEecCccceeeecc
Confidence            99999999999999999999999998642    122111 2445667788999765555443

>KOG0646 consensus WD40 repeat protein [General function prediction only]

Probab=99.91  E-value=5.3e-23  Score=170.75  Aligned_cols=192  Identities=26%  Similarity=0.424  Sum_probs=152.5

Q ss_pred             cccccccceeEEEEccCCCEEEEeeCCCCeEEEeCCC---------CcEEEEecCCCCceEEEEECCC--CCeEEEeeCC
Q 021399            5 LMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADN---------GERLGTYRGHNGAVWCCDVSRD--SMTLITGSAD   73 (313)
Q Consensus         5 ~l~~h~~~v~~~~fs~~g~~l~s~s~d~~i~iw~~~~---------~~~~~~~~~H~~~V~~~~~~~~--~~~l~s~s~D   73 (313)
                      ++.+|-++|+|+.|+.||.+|+|||.||.|.+|.+.+         .+.++.|.+|.-+|+.+...+.  +..++|+|.|
T Consensus       118 v~~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D  197 (476)
T KOG0646|consen  118 VLSAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASED  197 (476)
T ss_pred             HHHhhccceeEEEEeCCCcEEEecCCCccEEEEEEEeecccccCCCccceeeeccCcceeEEEEecCCCccceEEEecCC
Confidence            4688999999999999999999999999999996542         3467889999999999887654  4589999999


Q ss_pred             CcEEEEECCCCeEEEEecCCCCeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEE
Q 021399           74 QTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAV  153 (313)
Q Consensus        74 ~~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~  153 (313)
                      .++|+||+..+..+.++.++.                                                     .+.++.
T Consensus       198 ~t~k~wdlS~g~LLlti~fp~-----------------------------------------------------si~av~  224 (476)
T KOG0646|consen  198 RTIKLWDLSLGVLLLTITFPS-----------------------------------------------------SIKAVA  224 (476)
T ss_pred             ceEEEEEeccceeeEEEecCC-----------------------------------------------------cceeEE
Confidence            999999999987765554433                                                     344555


Q ss_pred             EccCCCEEEEeeCCCeEEEEECCCCceee-------------ecccccCcee--ceEEEEECCCCCEEEEeeCCCcEEEE
Q 021399          154 WGPLNRTIISAGEDAIVRIWDTETGKLLK-------------ESDKETGHKK--TITSLAKAADGSHFLTGSLDKSAKLW  218 (313)
Q Consensus       154 ~~~~~~~i~t~~~d~~i~lwd~~~~~~~~-------------~~~~~~~h~~--~v~~~~~s~~~~~l~s~s~dg~i~iw  218 (313)
                      ..|.++.+..|+++|.|.+.++..-...+             .+....||..  .|+|++.+-||..|++|+.||++.+|
T Consensus       225 lDpae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvW  304 (476)
T KOG0646|consen  225 LDPAERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLLSGDEDGKVCVW  304 (476)
T ss_pred             EcccccEEEecCCcceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCccEEEeeCCCCCEEEE
Confidence            66667777778888877777654322100             1122356777  99999999999999999999999999


Q ss_pred             ECCCCcEEEEEe-cCCceeEEEeccCCCEEEE
Q 021399          219 DARTLELIKTYV-TERPVNAVTMSPLLDHVVL  249 (313)
Q Consensus       219 d~~~~~~~~~~~-~~~~~~~~~~~p~~~~~~~  249 (313)
                      |+.+.++++++. ...+|+.+.+.|.-...+.
T Consensus       305 di~S~Q~iRtl~~~kgpVtnL~i~~~~~~~~l  336 (476)
T KOG0646|consen  305 DIYSKQCIRTLQTSKGPVTNLQINPLERGIIL  336 (476)
T ss_pred             ecchHHHHHHHhhhccccceeEeeccccceec
Confidence            999999999987 6788999999887554444

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=99.90  E-value=9.1e-21  Score=160.39  Aligned_cols=254  Identities=17%  Similarity=0.135  Sum_probs=171.3

Q ss_pred             CCEEEEeeCCCCeEEEeCCCCcEEEEecCCCCceEEEEECCCCCeE-EEeeCCCcEEEEECCCCeEEEEecCCCCeeEEE
Q 021399           22 GDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTL-ITGSADQTAKLWNVETGAQLFTFNFDSPARSVD  100 (313)
Q Consensus        22 g~~l~s~s~d~~i~iw~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l-~s~s~D~~v~vWd~~~~~~~~~~~~~~~~~~~~  100 (313)
                      +..++|++.|+.+++||.++++.+..+..|.. +.+++|+|+++.+ ++++.|+.|++||+.+++....+........+.
T Consensus         1 ~~~~~s~~~d~~v~~~d~~t~~~~~~~~~~~~-~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~   79 (300)
T TIGR03866         1 EKAYVSNEKDNTISVIDTATLEVTRTFPVGQR-PRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLPSGPDPELFA   79 (300)
T ss_pred             CcEEEEecCCCEEEEEECCCCceEEEEECCCC-CCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEeccCCCCccEEE
Confidence            35788999999999999999999888887654 6789999999865 677889999999999887766554444455677


Q ss_pred             eecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEccCCCEEEEeeCCC-eEEEEECCCCc
Q 021399          101 FAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDA-IVRIWDTETGK  179 (313)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~t~~~d~-~i~lwd~~~~~  179 (313)
                      +.+++..+++....    ...+..+++.      ....+..+.. ...+..+.|+|++..++++..++ .+..||..+++
T Consensus        80 ~~~~g~~l~~~~~~----~~~l~~~d~~------~~~~~~~~~~-~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~  148 (300)
T TIGR03866        80 LHPNGKILYIANED----DNLVTVIDIE------TRKVLAEIPV-GVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYE  148 (300)
T ss_pred             ECCCCCEEEEEcCC----CCeEEEEECC------CCeEEeEeeC-CCCcceEEECCCCCEEEEEecCCCeEEEEeCCCCe
Confidence            77776655443211    1122223221      1122333332 22356789999999999888765 57788998776


Q ss_pred             eeeecccccCceeceEEEEECCCCCEEEE-eeCCCcEEEEECCCCcEEEEEecCC--------ceeEEEeccCCCEEEEc
Q 021399          180 LLKESDKETGHKKTITSLAKAADGSHFLT-GSLDKSAKLWDARTLELIKTYVTER--------PVNAVTMSPLLDHVVLG  250 (313)
Q Consensus       180 ~~~~~~~~~~h~~~v~~~~~s~~~~~l~s-~s~dg~i~iwd~~~~~~~~~~~~~~--------~~~~~~~~p~~~~~~~~  250 (313)
                      ......    .......++|++++.+++. +..++.|++||+++++++..+....        ....++|+|++..++++
T Consensus       149 ~~~~~~----~~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~  224 (300)
T TIGR03866       149 IVDNVL----VDQRPRFAEFTADGKELWVSSEIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVA  224 (300)
T ss_pred             EEEEEE----cCCCccEEEECCCCCEEEEEcCCCCEEEEEEcCcceeeeeeeecccccccccCCccceEECCCCCEEEEE
Confidence            654332    1234577899999998854 4569999999999998877654211        13468899999987765


Q ss_pred             ccccCceeEeeccCCCceeeeeeehhhhhhhccccccccceeEEEECCCCCeeEE
Q 021399          251 GGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKRYGF  305 (313)
Q Consensus       251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~fspdgk~~~~  305 (313)
                      .+.+. .+..+|.+.+            +.+..+ .+...+++++|+|||+++..
T Consensus       225 ~~~~~-~i~v~d~~~~------------~~~~~~-~~~~~~~~~~~~~~g~~l~~  265 (300)
T TIGR03866       225 LGPAN-RVAVVDAKTY------------EVLDYL-LVGQRVWQLAFTPDEKYLLT  265 (300)
T ss_pred             cCCCC-eEEEEECCCC------------cEEEEE-EeCCCcceEEECCCCCEEEE
Confidence            44332 2444454332            222111 23457899999999998754

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>KOG2055 consensus WD40 repeat protein [General function prediction only]

Probab=99.90  E-value=2.5e-22  Score=166.66  Aligned_cols=235  Identities=16%  Similarity=0.208  Sum_probs=179.6

Q ss_pred             ccceeEEEEccCCCEEEEeeCCCCeEEEeCC--CCcEEEEecCCCCceEEEEECCCCC-eEEEeeCCCcEEEEECCCCeE
Q 021399           10 ERPLTYLKYNKDGDLLFSCAKDHTPTVWFAD--NGERLGTYRGHNGAVWCCDVSRDSM-TLITGSADQTAKLWNVETGAQ   86 (313)
Q Consensus        10 ~~~v~~~~fs~~g~~l~s~s~d~~i~iw~~~--~~~~~~~~~~H~~~V~~~~~~~~~~-~l~s~s~D~~v~vWd~~~~~~   86 (313)
                      ..+|+++.|+|..+.|++++.|++++||-++  ....+..+.--..+|.+.+|.|+|+ .++++|....+..||+.+.+.
T Consensus       213 ~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak~  292 (514)
T KOG2055|consen  213 HGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAKV  292 (514)
T ss_pred             cCCceEEEecCCCceEEEecCCCcEEEEEecCccChhheeeeeccCccceeeecCCCceEEEecccceEEEEeecccccc
Confidence            4579999999999999999999999999554  4445666665678999999999998 999999999999999988764


Q ss_pred             EEEecCCCCeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCC-CCceEEEEEccCCCEEEEee
Q 021399           87 LFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGP-QGRINRAVWGPLNRTIISAG  165 (313)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~~~~~~~i~t~~  165 (313)
                      ......                                                  .++ +..+.....++++++|+..|
T Consensus       293 ~k~~~~--------------------------------------------------~g~e~~~~e~FeVShd~~fia~~G  322 (514)
T KOG2055|consen  293 TKLKPP--------------------------------------------------YGVEEKSMERFEVSHDSNFIAIAG  322 (514)
T ss_pred             ccccCC--------------------------------------------------CCcccchhheeEecCCCCeEEEcc
Confidence            321110                                                  000 11233455678889999999


Q ss_pred             CCCeEEEEECCCCceeeecccccCceeceEEEEECCCCCEEEEeeCCCcEEEEECCCCcEEEEEecCCceeE--EEeccC
Q 021399          166 EDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTERPVNA--VTMSPL  243 (313)
Q Consensus       166 ~d~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~--~~~~p~  243 (313)
                      ..|.|+|--..++..+..+.    -.+.|.+++|+.|++.|++.+.+|.|.+||++...++..+..+..+..  ++.++.
T Consensus       323 ~~G~I~lLhakT~eli~s~K----ieG~v~~~~fsSdsk~l~~~~~~GeV~v~nl~~~~~~~rf~D~G~v~gts~~~S~n  398 (514)
T KOG2055|consen  323 NNGHIHLLHAKTKELITSFK----IEGVVSDFTFSSDSKELLASGGTGEVYVWNLRQNSCLHRFVDDGSVHGTSLCISLN  398 (514)
T ss_pred             cCceEEeehhhhhhhhheee----eccEEeeEEEecCCcEEEEEcCCceEEEEecCCcceEEEEeecCccceeeeeecCC
Confidence            99999999998888765543    467899999999999999999999999999999999999988777654  555566


Q ss_pred             CCEEEEcccccCceeEeeccCCCceeeeeeehhhhhhhccccccccceeEEEECCCCCeeEEE
Q 021399          244 LDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKRYGFL  306 (313)
Q Consensus       244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~fspdgk~~~~~  306 (313)
                      +.+  ++.|++.+.|-++|...      .+.....+++..+.--...|++++||||++++|++
T Consensus       399 g~y--lA~GS~~GiVNIYd~~s------~~~s~~PkPik~~dNLtt~Itsl~Fn~d~qiLAia  453 (514)
T KOG2055|consen  399 GSY--LATGSDSGIVNIYDGNS------CFASTNPKPIKTVDNLTTAITSLQFNHDAQILAIA  453 (514)
T ss_pred             Cce--EEeccCcceEEEeccch------hhccCCCCchhhhhhhheeeeeeeeCcchhhhhhh
Confidence            664  44455666666666322      11122344455555557899999999999999986

>KOG0302 consensus Ribosome Assembly protein [General function prediction only]

Probab=99.90  E-value=7e-23  Score=165.97  Aligned_cols=205  Identities=19%  Similarity=0.281  Sum_probs=154.6

Q ss_pred             CCcc-cccccccceeEEEEccC-CCEEEEeeCCCCeEEEeCCCCcE---EEEecCCCCceEEEEECCCC-CeEEEeeCCC
Q 021399            1 MRPI-LMKGHERPLTYLKYNKD-GDLLFSCAKDHTPTVWFADNGER---LGTYRGHNGAVWCCDVSRDS-MTLITGSADQ   74 (313)
Q Consensus         1 ~~~~-~l~~h~~~v~~~~fs~~-g~~l~s~s~d~~i~iw~~~~~~~---~~~~~~H~~~V~~~~~~~~~-~~l~s~s~D~   74 (313)
                      +||+ ++.+|.+.=+.|+|||- --.|+||..-+.|++|...++.-   ...|.+|+.+|-.+.|||.. ..|+|||.||
T Consensus       201 ~~Pl~t~~ghk~EGy~LdWSp~~~g~LlsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~Dg  280 (440)
T KOG0302|consen  201 FRPLFTFNGHKGEGYGLDWSPIKTGRLLSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDG  280 (440)
T ss_pred             cCceEEecccCccceeeecccccccccccCccccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeecCc
Confidence            5777 78889998899999993 23688888889999998887753   23567899999999999964 5899999999


Q ss_pred             cEEEEECCCCeEEEEecCCCCeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEE
Q 021399           75 TAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVW  154 (313)
Q Consensus        75 ~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~  154 (313)
                      +|+|||++.+...                                                  ..+..+.|.+.|+-+.|
T Consensus       281 sIrIWDiRs~~~~--------------------------------------------------~~~~~kAh~sDVNVISW  310 (440)
T KOG0302|consen  281 SIRIWDIRSGPKK--------------------------------------------------AAVSTKAHNSDVNVISW  310 (440)
T ss_pred             eEEEEEecCCCcc--------------------------------------------------ceeEeeccCCceeeEEc
Confidence            9999999876311                                                  11222567778888999


Q ss_pred             ccCCCEEEEeeCCCeEEEEECCCCceeeecccccCceeceEEEEECCC-CCEEEEeeCCCcEEEEECCCCcE--------
Q 021399          155 GPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAAD-GSHFLTGSLDKSAKLWDARTLEL--------  225 (313)
Q Consensus       155 ~~~~~~i~t~~~d~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~-~~~l~s~s~dg~i~iwd~~~~~~--------  225 (313)
                      +....+|++|++||+++|||+++.+.-+.+....-|+..|+++.|+|. ...|++++.|.+|.+||+....-        
T Consensus       311 nr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg~D~QitiWDlsvE~D~ee~~~~a  390 (440)
T KOG0302|consen  311 NRREPLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHEDSVIAASGEDNQITIWDLSVEADEEEIDQEA  390 (440)
T ss_pred             cCCcceeeecCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccccCceEEeccCCCcEEEEEeeccCChhhhcccc
Confidence            988889999999999999998764432222222358999999999985 45688899999999999754321        


Q ss_pred             -----------EEEEecCCceeEEEeccCCCEEEEcccccC
Q 021399          226 -----------IKTYVTERPVNAVTMSPLLDHVVLGGGQDA  255 (313)
Q Consensus       226 -----------~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~  255 (313)
                                 +..-+....+..+.|++..+.++++.+-++
T Consensus       391 ~~~L~dlPpQLLFVHqGQke~KevhWH~QiPG~lvsTa~dG  431 (440)
T KOG0302|consen  391 AEGLQDLPPQLLFVHQGQKEVKEVHWHRQIPGLLVSTAIDG  431 (440)
T ss_pred             ccchhcCCceeEEEecchhHhhhheeccCCCCeEEEecccc
Confidence                       111112345778999999887777655444

>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]

Probab=99.90  E-value=8.7e-21  Score=159.21  Aligned_cols=257  Identities=18%  Similarity=0.271  Sum_probs=180.0

Q ss_pred             cceeEEEEccCCCEEEEeeCCCCeEEEeCCCCcEEEEecCCCCceEEEEECCCCCeEEEeeCCCcEEEEECCCCeEEEEe
Q 021399           11 RPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTF   90 (313)
Q Consensus        11 ~~v~~~~fs~~g~~l~s~s~d~~i~iw~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~v~vWd~~~~~~~~~~   90 (313)
                      +.|.|++|.++|+. ++|..+|.|.||+..+.+..++..+|.+.|.+++.-.+|. |+||+.|+.|..||-.-. .+...
T Consensus       247 k~Vl~v~F~engdv-iTgDS~G~i~Iw~~~~~~~~k~~~aH~ggv~~L~~lr~Gt-llSGgKDRki~~Wd~~y~-k~r~~  323 (626)
T KOG2106|consen  247 KFVLCVTFLENGDV-ITGDSGGNILIWSKGTNRISKQVHAHDGGVFSLCMLRDGT-LLSGGKDRKIILWDDNYR-KLRET  323 (626)
T ss_pred             eEEEEEEEcCCCCE-EeecCCceEEEEeCCCceEEeEeeecCCceEEEEEecCcc-EeecCccceEEecccccc-ccccc
Confidence            46899999999975 5699999999999888877777779999999999998886 556999999999993222 22222


Q ss_pred             c---CCCCeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEccCCCEEEEeeCC
Q 021399           91 N---FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGED  167 (313)
Q Consensus        91 ~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~t~~~d  167 (313)
                      .   .-.+++.+.-..++ +.+..+.+++.. +.+            .+.......+|......++.+|..+.++|++.|
T Consensus       324 elPe~~G~iRtv~e~~~d-i~vGTtrN~iL~-Gt~------------~~~f~~~v~gh~delwgla~hps~~q~~T~gqd  389 (626)
T KOG2106|consen  324 ELPEQFGPIRTVAEGKGD-ILVGTTRNFILQ-GTL------------ENGFTLTVQGHGDELWGLATHPSKNQLLTCGQD  389 (626)
T ss_pred             cCchhcCCeeEEecCCCc-EEEeeccceEEE-eee------------cCCceEEEEecccceeeEEcCCChhheeeccCc
Confidence            2   12334444322223 444444432211 110            112234456777788889999999999999999


Q ss_pred             CeEEEEECCCCceeeecccccCceeceEEEEECCCCCEEEEeeCCCcEEEEECCCCcEEEEEecCCceeEEEeccCCCEE
Q 021399          168 AIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTERPVNAVTMSPLLDHV  247 (313)
Q Consensus       168 ~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~p~~~~~  247 (313)
                      +.++||+ ..+-...++     -.....|+.|+|.| .+|.|+..|.-.+.|.++...+..-....++.++.|+|+|..+
T Consensus       390 k~v~lW~-~~k~~wt~~-----~~d~~~~~~fhpsg-~va~Gt~~G~w~V~d~e~~~lv~~~~d~~~ls~v~ysp~G~~l  462 (626)
T KOG2106|consen  390 KHVRLWN-DHKLEWTKI-----IEDPAECADFHPSG-VVAVGTATGRWFVLDTETQDLVTIHTDNEQLSVVRYSPDGAFL  462 (626)
T ss_pred             ceEEEcc-CCceeEEEE-----ecCceeEeeccCcc-eEEEeeccceEEEEecccceeEEEEecCCceEEEEEcCCCCEE
Confidence            9999999 322222222     34678899999999 9999999999999999997776665667899999999999988


Q ss_pred             EEcccccCceeEeeccCCCceeeeeeehhhhhhhccccccccceeEEEECCCCCee
Q 021399          248 VLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKRY  303 (313)
Q Consensus       248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~fspdgk~~  303 (313)
                      +++..+.  .++++-..........        +++  .|.++|+.+.||+|++.+
T Consensus       463 Avgs~d~--~iyiy~Vs~~g~~y~r--------~~k--~~gs~ithLDwS~Ds~~~  506 (626)
T KOG2106|consen  463 AVGSHDN--HIYIYRVSANGRKYSR--------VGK--CSGSPITHLDWSSDSQFL  506 (626)
T ss_pred             EEecCCC--eEEEEEECCCCcEEEE--------eee--ecCceeEEeeecCCCceE
Confidence            8765443  3443332211111111        122  344899999999999985

>KOG0646 consensus WD40 repeat protein [General function prediction only]

Probab=99.90  E-value=8.3e-22  Score=163.74  Aligned_cols=228  Identities=21%  Similarity=0.290  Sum_probs=177.3

Q ss_pred             cceeEEEEccCCCEEEEeeCCCCeEEEeCCCCcEEEEecCCCCceEEEEECCCCCeEEEeeCCCcEEEEECCCCeEEEEe
Q 021399           11 RPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTF   90 (313)
Q Consensus        11 ~~v~~~~fs~~g~~l~s~s~d~~i~iw~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~v~vWd~~~~~~~~~~   90 (313)
                      ++|.|+.-+|+|.+|+.|...+.+++|.+.+|+.+..+.+|-.+|+|+.|+-|+..|+|||.||.|.+|++.+--     
T Consensus        82 g~v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~v~~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv-----  156 (476)
T KOG0646|consen   82 GPVHALASSNLGYFLLAGTISGNLYLWELSSGILLNVLSAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLV-----  156 (476)
T ss_pred             cceeeeecCCCceEEEeecccCcEEEEEeccccHHHHHHhhccceeEEEEeCCCcEEEecCCCccEEEEEEEeec-----
Confidence            468999999999999988899999999999999999999999999999999999999999999999999865310     


Q ss_pred             cCCCCeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEccC--CCEEEEeeCCC
Q 021399           91 NFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPL--NRTIISAGEDA  168 (313)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~~~i~t~~~d~  168 (313)
                                 .++                           .+....+...+.+|.-+|+++...+.  ..+++|+|.|.
T Consensus       157 -----------~a~---------------------------~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~  198 (476)
T KOG0646|consen  157 -----------SAD---------------------------NDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDR  198 (476)
T ss_pred             -----------ccc---------------------------cCCCccceeeeccCcceeEEEEecCCCccceEEEecCCc
Confidence                       000                           00122345566778778888777654  46899999999


Q ss_pred             eEEEEECCCCceeeecccccCceeceEEEEECCCCCEEEEeeCCCcEEEEECCCCc----------------EEEEEe-c
Q 021399          169 IVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLE----------------LIKTYV-T  231 (313)
Q Consensus       169 ~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~----------------~~~~~~-~  231 (313)
                      ++++||+..+.++..+.    ....+++++.+|-+..+..|+.+|.|.+.++....                .+..+. +
T Consensus       199 t~k~wdlS~g~LLlti~----fp~si~av~lDpae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh  274 (476)
T KOG0646|consen  199 TIKLWDLSLGVLLLTIT----FPSSIKAVALDPAERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGH  274 (476)
T ss_pred             eEEEEEeccceeeEEEe----cCCcceeEEEcccccEEEecCCcceEEeeehhcCCcccccccccccccccceeeeeccc
Confidence            99999999999887764    35679999999999999999999999988765432                122222 2


Q ss_pred             C--CceeEEEeccCCCEEEEcccccCceeEeeccCCCceeeeeeehhhhhhhccccccccceeEEEECCC
Q 021399          232 E--RPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPD  299 (313)
Q Consensus       232 ~--~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~fspd  299 (313)
                      .  ..|.|++.+-++.-++ +|+.|+             ...+||..+..++..+..-.++|+-+.+.|=
T Consensus       275 ~~~~~ITcLais~DgtlLl-SGd~dg-------------~VcvWdi~S~Q~iRtl~~~kgpVtnL~i~~~  330 (476)
T KOG0646|consen  275 ENESAITCLAISTDGTLLL-SGDEDG-------------KVCVWDIYSKQCIRTLQTSKGPVTNLQINPL  330 (476)
T ss_pred             cCCcceeEEEEecCccEEE-eeCCCC-------------CEEEEecchHHHHHHHhhhccccceeEeecc
Confidence            2  3789999998887554 444443             2456777777777766656789999988554

>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]

Probab=99.90  E-value=2.3e-23  Score=170.51  Aligned_cols=232  Identities=19%  Similarity=0.317  Sum_probs=182.0

Q ss_pred             cccccccceeEEEEccCCCEEEEeeCCCCeEEEeCCCCc--EEEEecCCCCceEEEEECCCCCeEEEeeCCCcEEEEECC
Q 021399            5 LMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGE--RLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVE   82 (313)
Q Consensus         5 ~l~~h~~~v~~~~fs~~g~~l~s~s~d~~i~iw~~~~~~--~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~v~vWd~~   82 (313)
                      .+..|...+..+.|-++...|++|+.|..|++|+....+  .+.++.|-.+.|+++.|.+++..+++++.|+.+++|++.
T Consensus       170 ~ld~h~gev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k~~~~~tLaGs~g~it~~d~d~~~~~~iAas~d~~~r~Wnvd  249 (459)
T KOG0288|consen  170 VLDAHEGEVHDVEFLRNSDTLATGGSDRIIKLWNVLGEKSELISTLAGSLGNITSIDFDSDNKHVIAASNDKNLRLWNVD  249 (459)
T ss_pred             hhhccccccceeEEccCcchhhhcchhhhhhhhhcccchhhhhhhhhccCCCcceeeecCCCceEEeecCCCceeeeecc
Confidence            577899999999999999999999999999999887665  678899989999999999999999999999999999987


Q ss_pred             CCeEEEEecCCCCeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEccCCCEEE
Q 021399           83 TGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTII  162 (313)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~  162 (313)
                      +....                                                    ..+.+|+.++..+.|......++
T Consensus       250 ~~r~~----------------------------------------------------~TLsGHtdkVt~ak~~~~~~~vV  277 (459)
T KOG0288|consen  250 SLRLR----------------------------------------------------HTLSGHTDKVTAAKFKLSHSRVV  277 (459)
T ss_pred             chhhh----------------------------------------------------hhhcccccceeeehhhcccccee
Confidence            65432                                                    12346777777777776666699


Q ss_pred             EeeCCCeEEEEECCCCceeeecccccCceeceEEEEECCCCCEEEEeeCCCcEEEEECCCCcEEEEEecCCceeEEEecc
Q 021399          163 SAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTERPVNAVTMSP  242 (313)
Q Consensus       163 t~~~d~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~p  242 (313)
                      +|+.|.+|++||+....+.+++..    ...+.++..+  ...++||-.|++||+||.++..+..+....+.+.++..++
T Consensus       278 sgs~DRtiK~WDl~k~~C~kt~l~----~S~cnDI~~~--~~~~~SgH~DkkvRfwD~Rs~~~~~sv~~gg~vtSl~ls~  351 (459)
T KOG0288|consen  278 SGSADRTIKLWDLQKAYCSKTVLP----GSQCNDIVCS--ISDVISGHFDKKVRFWDIRSADKTRSVPLGGRVTSLDLSM  351 (459)
T ss_pred             eccccchhhhhhhhhhheeccccc----cccccceEec--ceeeeecccccceEEEeccCCceeeEeecCcceeeEeecc
Confidence            999999999999998877776543    2344555544  5678999999999999999999999988888999999999


Q ss_pred             CCCEEEEcccccCceeEeeccCCCceeeeeeehhhhhhhccccccccceeEEEECCCCCeeE
Q 021399          243 LLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKRYG  304 (313)
Q Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~fspdgk~~~  304 (313)
                      ++..++.++-+|.  +.+.|.|.......      ....+..-+|  ..+.+.||||+.++|
T Consensus       352 ~g~~lLsssRDdt--l~viDlRt~eI~~~------~sA~g~k~as--DwtrvvfSpd~~Yva  403 (459)
T KOG0288|consen  352 DGLELLSSSRDDT--LKVIDLRTKEIRQT------FSAEGFKCAS--DWTRVVFSPDGSYVA  403 (459)
T ss_pred             CCeEEeeecCCCc--eeeeecccccEEEE------eecccccccc--ccceeEECCCCceee
Confidence            9999888755443  44455554322111      1111122233  489999999999864

>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]

Probab=99.90  E-value=1.1e-20  Score=150.14  Aligned_cols=237  Identities=21%  Similarity=0.290  Sum_probs=171.9

Q ss_pred             EEEecCCCCceEEEEECCCCCeEEEeeCCCcEEEEECCCCeEEEEecCC-CCeeEEEeecCCeEEEEECCCceeccccce
Q 021399           45 LGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFNFD-SPARSVDFAVGDKLAVITTDPFMELNSAIH  123 (313)
Q Consensus        45 ~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~v~vWd~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  123 (313)
                      -+.|+.-.+.|.++.|+++|+.+++++.|.++++||..+++++.++... -.+..+.|......+..++.+   .+..++
T Consensus         7 ak~f~~~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~~~~i~sStk---~d~tIr   83 (311)
T KOG1446|consen    7 AKVFRETNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTHHSNTVIHSSTK---EDDTIR   83 (311)
T ss_pred             ccccccCCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEeecccccccEEEEecCCceEEEccCC---CCCceE
Confidence            3456666789999999999999999999999999999999988777542 234444554443333333321   122233


Q ss_pred             eeeeeeCCCCCCCceEEEecCCCCceEEEEEccCCCEEEEeeCCCeEEEEECCCCceeeecccc----------------
Q 021399          124 VKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKE----------------  187 (313)
Q Consensus       124 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~t~~~d~~i~lwd~~~~~~~~~~~~~----------------  187 (313)
                      ..++.      .++.+..+.||...|+++..+|.++.+++++.|++||+||++..++.-.+...                
T Consensus        84 yLsl~------dNkylRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~~~pi~AfDp~GLifA~  157 (311)
T KOG1446|consen   84 YLSLH------DNKYLRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNLSGRPIAAFDPEGLIFAL  157 (311)
T ss_pred             EEEee------cCceEEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEecCCCcceeECCCCcEEEE
Confidence            33322      35678889999999999999999999999999999999999865432211100                


Q ss_pred             --------------------------cCceeceEEEEECCCCCEEEEeeCCCcEEEEECCCCcEEEEEecCCce----eE
Q 021399          188 --------------------------TGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTERPV----NA  237 (313)
Q Consensus       188 --------------------------~~h~~~v~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~----~~  237 (313)
                                                .+-....+.+.|||||++|+.+...+.+++.|.=+|....++......    ..
T Consensus       158 ~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~~~~~~~~  237 (311)
T KOG1446|consen  158 ANGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKSTFSGYPNAGNLPLS  237 (311)
T ss_pred             ecCCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeEeeccCCCCccee
Confidence                                      011344677889999999999999999999999999988877543222    47


Q ss_pred             EEeccCCCEEEEcccccCceeEeeccCCCceeeeeeehhhhhhhccccc-cccceeEEEECCCCCeeE
Q 021399          238 VTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKG-HFGPINALAFNPDGKRYG  304 (313)
Q Consensus       238 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-h~~~V~~~~fspdgk~~~  304 (313)
                      .+|+|+++.++.+.. |+             .+.+|+.+++..+..+.+ +.+++.++.|+|---+|+
T Consensus       238 a~ftPds~Fvl~gs~-dg-------------~i~vw~~~tg~~v~~~~~~~~~~~~~~~fnP~~~mf~  291 (311)
T KOG1446|consen  238 ATFTPDSKFVLSGSD-DG-------------TIHVWNLETGKKVAVLRGPNGGPVSCVRFNPRYAMFV  291 (311)
T ss_pred             EEECCCCcEEEEecC-CC-------------cEEEEEcCCCcEeeEecCCCCCCccccccCCceeeee
Confidence            889999988776543 22             244677777777777777 899999999999744443

>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]

Probab=99.90  E-value=2.5e-22  Score=168.79  Aligned_cols=241  Identities=22%  Similarity=0.337  Sum_probs=158.7

Q ss_pred             EEEecCCCCceEEEEECCCCCeEEEeeCCCcEEEEECCCCeEEE-Ee---c--CCCCeeEEEeec-CCeEEEEECCCcee
Q 021399           45 LGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLF-TF---N--FDSPARSVDFAV-GDKLAVITTDPFME  117 (313)
Q Consensus        45 ~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~v~vWd~~~~~~~~-~~---~--~~~~~~~~~~~~-~~~~~~~~~~~~~~  117 (313)
                      ...+++|...|.++++.|.|-.|+|||.|.+|++||........ .+   .  -.+.+.++.+++ ++.+++++...-..
T Consensus       160 Ei~l~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg~aqak  239 (641)
T KOG0772|consen  160 EIQLKHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVSGSAQAK  239 (641)
T ss_pred             eEeccCCceEEEEeeecCCCceeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEecCccee
Confidence            34678999999999999999999999999999999986543211 11   1  135788888887 56666665542111


Q ss_pred             c-cccce-eeeeeeCCCCCCCce---EEEecCCCCceEEEEEccCC-CEEEEeeCCCeEEEEECCCCceeeeccc---cc
Q 021399          118 L-NSAIH-VKRIARDPADQGGES---VLILKGPQGRINRAVWGPLN-RTIISAGEDAIVRIWDTETGKLLKESDK---ET  188 (313)
Q Consensus       118 ~-~~~~~-~~~~~~~~~~~~~~~---~~~~~~~~~~i~~~~~~~~~-~~i~t~~~d~~i~lwd~~~~~~~~~~~~---~~  188 (313)
                      + +.... ....     ..+.+.   ....+||-..+++.+|+|.. +.|+|++.||++||||+...+.-..+..   ..
T Consensus       240 l~DRdG~~~~e~-----~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~  314 (641)
T KOG0772|consen  240 LLDRDGFEIVEF-----SKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAG  314 (641)
T ss_pred             EEccCCceeeee-----eccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccCC
Confidence            1 11100 0000     001111   12346888889999999975 5789999999999999976543222221   22


Q ss_pred             CceeceEEEEECCCCCEEEEeeCCCcEEEEECCCCcE-----EEEEe-cCCceeEEEeccCCCEEEEcccccCceeEeec
Q 021399          189 GHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLEL-----IKTYV-TERPVNAVTMSPLLDHVVLGGGQDASAVTTTD  262 (313)
Q Consensus       189 ~h~~~v~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~-----~~~~~-~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~  262 (313)
                      +.+-.++.++|++||+.||+|+.||.|.+|+......     ++.-. ....+.+++|+++|++++.-|.++.  +.+||
T Consensus       315 g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~t--LKvWD  392 (641)
T KOG0772|consen  315 GKRVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDT--LKVWD  392 (641)
T ss_pred             CcccCceeeecCCCcchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhhhccCCCc--eeeee
Confidence            4456788999999999999999999999999765322     22211 1347999999999998876554442  33444


Q ss_pred             cCCCceeeeeeehhhhhhhcccccc--ccceeEEEECCCCCee
Q 021399          263 HRAGKFEAKFFDKILQEEIGGVKGH--FGPINALAFNPDGKRY  303 (313)
Q Consensus       263 ~~~~~~~~~~~~~~~~~~~~~~~~h--~~~V~~~~fspdgk~~  303 (313)
                      .|.           ..+++....+-  .-+-+.+.||||.|.+
T Consensus       393 Lrq-----------~kkpL~~~tgL~t~~~~tdc~FSPd~kli  424 (641)
T KOG0772|consen  393 LRQ-----------FKKPLNVRTGLPTPFPGTDCCFSPDDKLI  424 (641)
T ss_pred             ccc-----------cccchhhhcCCCccCCCCccccCCCceEE
Confidence            332           22233322222  3356888999998764

>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.90  E-value=7.5e-22  Score=170.14  Aligned_cols=218  Identities=20%  Similarity=0.328  Sum_probs=173.4

Q ss_pred             EEEccCCCEEEEeeCCCCeEEEeCCCCcEEEEecCCCCceEEEEECCCCCeEEEeeCCCcEEEEECCCCeEEEEecCCCC
Q 021399           16 LKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFNFDSP   95 (313)
Q Consensus        16 ~~fs~~g~~l~s~s~d~~i~iw~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~v~vWd~~~~~~~~~~~~~~~   95 (313)
                      +.|+. ...|+.| .+..|.+|+..++........++..|+++.|+++|+.|+.|-.+|.|.|||..+.+.+..      
T Consensus       183 ldWss-~n~laVa-lg~~vylW~~~s~~v~~l~~~~~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~~~------  254 (484)
T KOG0305|consen  183 LDWSS-ANVLAVA-LGQSVYLWSASSGSVTELCSFGEELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKTRT------  254 (484)
T ss_pred             hhccc-CCeEEEE-ecceEEEEecCCCceEEeEecCCCceEEEEECCCCCEEEEeecCCeEEEEehhhcccccc------
Confidence            56773 3355544 457899999999987666666689999999999999999999999999999876543321      


Q ss_pred             eeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecC-CCCceEEEEEccCCCEEEEeeCCCeEEEEE
Q 021399           96 ARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKG-PQGRINRAVWGPLNRTIISAGEDAIVRIWD  174 (313)
Q Consensus        96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~i~t~~~d~~i~lwd  174 (313)
                                                                    +.+ |.++|.+++|.  +..+.+|+.|+.|..+|
T Consensus       255 ----------------------------------------------~~~~h~~rvg~laW~--~~~lssGsr~~~I~~~d  286 (484)
T KOG0305|consen  255 ----------------------------------------------LRGSHASRVGSLAWN--SSVLSSGSRDGKILNHD  286 (484)
T ss_pred             ----------------------------------------------ccCCcCceeEEEecc--CceEEEecCCCcEEEEE
Confidence                                                          122 67788889998  46789999999999999


Q ss_pred             CCCCceeeecccccCceeceEEEEECCCCCEEEEeeCCCcEEEEECCCCcEEEEEe-cCCceeEEEeccCCCEEEEcccc
Q 021399          175 TETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYV-TERPVNAVTMSPLLDHVVLGGGQ  253 (313)
Q Consensus       175 ~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~-~~~~~~~~~~~p~~~~~~~~~~~  253 (313)
                      ++..+....  ...+|...|+.+.|++|+.++|+|+.|+.+.|||....++...+. +...+.+++|+|....+++.||.
T Consensus       287 vR~~~~~~~--~~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~~p~~~~~~H~aAVKA~awcP~q~~lLAsGGG  364 (484)
T KOG0305|consen  287 VRISQHVVS--TLQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSPEPKFTFTEHTAAVKALAWCPWQSGLLATGGG  364 (484)
T ss_pred             Eecchhhhh--hhhcccceeeeeEECCCCCeeccCCCccceEeccCCCccccEEEeccceeeeEeeeCCCccCceEEcCC
Confidence            987765443  235799999999999999999999999999999998777776664 56789999999998877765543


Q ss_pred             -cCceeEeeccCCCceeeeeeehhhhhhhccccccccceeEEEECCCCCeeE
Q 021399          254 -DASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKRYG  304 (313)
Q Consensus       254 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~fspdgk~~~  304 (313)
                       -+.            .++|||..+++.+.... -.+.|..|.|++..|++.
T Consensus       365 s~D~------------~i~fwn~~~g~~i~~vd-tgsQVcsL~Wsk~~kEi~  403 (484)
T KOG0305|consen  365 SADR------------CIKFWNTNTGARIDSVD-TGSQVCSLIWSKKYKELL  403 (484)
T ss_pred             Cccc------------EEEEEEcCCCcEecccc-cCCceeeEEEcCCCCEEE
Confidence             332            35778777777666554 478999999999998864

>KOG1539 consensus WD repeat protein [General function prediction only]

Probab=99.89  E-value=1.5e-20  Score=166.20  Aligned_cols=289  Identities=14%  Similarity=0.198  Sum_probs=213.3

Q ss_pred             cccccccceeEEEEccCCCEEEEeeCCCCeEEEeCCCCcEEEEecCCCCceEEEEECCCCC-eEEEeeCCCcEEEEECCC
Q 021399            5 LMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSM-TLITGSADQTAKLWNVET   83 (313)
Q Consensus         5 ~l~~h~~~v~~~~fs~~g~~l~s~s~d~~i~iw~~~~~~~~~~~~~H~~~V~~~~~~~~~~-~l~s~s~D~~v~vWd~~~   83 (313)
                      +++++...|+++.-+|--..++.|-.+|+|.|++++.++.+.+|+.-.+.|++++|..||+ .+++|+..|.+-+||++.
T Consensus       197 ~f~~~~s~IT~ieqsPaLDVVaiG~~~G~ViifNlK~dkil~sFk~d~g~VtslSFrtDG~p~las~~~~G~m~~wDLe~  276 (910)
T KOG1539|consen  197 TFQEFFSRITAIEQSPALDVVAIGLENGTVIIFNLKFDKILMSFKQDWGRVTSLSFRTDGNPLLASGRSNGDMAFWDLEK  276 (910)
T ss_pred             EecccccceeEeccCCcceEEEEeccCceEEEEEcccCcEEEEEEccccceeEEEeccCCCeeEEeccCCceEEEEEcCC
Confidence            5778889999999999999999999999999999999999999986679999999999997 667777889999999998


Q ss_pred             CeEEEEec--CCCCeeEEEeecCCeEEEEECC-Cceec---c---c-----------------------cce-eeeeeeC
Q 021399           84 GAQLFTFN--FDSPARSVDFAVGDKLAVITTD-PFMEL---N---S-----------------------AIH-VKRIARD  130 (313)
Q Consensus        84 ~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~-~~~~~---~---~-----------------------~~~-~~~~~~~  130 (313)
                      .+.+....  +...+....|.++..+++.... +....   +   +                       ..+ ......+
T Consensus       277 kkl~~v~~nah~~sv~~~~fl~~epVl~ta~~DnSlk~~vfD~~dg~pR~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~D  356 (910)
T KOG1539|consen  277 KKLINVTRNAHYGSVTGATFLPGEPVLVTAGADNSLKVWVFDSGDGVPRLLRSRGGHSAPPSCIRFYGSQGHFILSAKQD  356 (910)
T ss_pred             CeeeeeeeccccCCcccceecCCCceEeeccCCCceeEEEeeCCCCcchheeeccCCCCCchheeeeccCcEEEEecccC
Confidence            77664432  2234444455554443333211 10000   0   0                       000 0000000


Q ss_pred             CC---------------------------C-C-----C--------------------------CceEEEe---------
Q 021399          131 PA---------------------------D-Q-----G--------------------------GESVLIL---------  142 (313)
Q Consensus       131 ~~---------------------------~-~-----~--------------------------~~~~~~~---------  142 (313)
                      +.                           . .     .                          ......+         
T Consensus       357 rt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~  436 (910)
T KOG1539|consen  357 RTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGR  436 (910)
T ss_pred             cchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCcceeeecccchhhhhcceeEEecCcceEEEEeccCccccc
Confidence            00                           0 0     0                          0000000         


Q ss_pred             --cCCC------CceEEEEEccCCCEEEEeeCCCeEEEEECCCCceeeecccccCceeceEEEEECCCCCEEEEeeCCCc
Q 021399          143 --KGPQ------GRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKS  214 (313)
Q Consensus       143 --~~~~------~~i~~~~~~~~~~~i~t~~~d~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~dg~  214 (313)
                        -.+.      ..+.+++.++-|++.+.|...|.|.++++++|-....+.....|...|+.++...-+..++|++.+|-
T Consensus       437 ~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gi  516 (910)
T KOG1539|consen  437 HVLDPKRFKKDDINATAVCVSFCGNFVFIGYSKGTIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGI  516 (910)
T ss_pred             EEecCccccccCcceEEEEEeccCceEEEeccCCeEEEEEcccCeeecccccCccccCceeEEEecCCCceEEEccCcce
Confidence              0111      34567888888999999999999999999998776666555679999999999999999999999999


Q ss_pred             EEEEECCCCcEEEEEecCCceeEEEeccCCCEEEEcccccCceeEeeccCCCceeeeeeehhhhhhhccccccccceeEE
Q 021399          215 AKLWDARTLELIKTYVTERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINAL  294 (313)
Q Consensus       215 i~iwd~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~  294 (313)
                      +++||.....++.++....++.++..+...+.++++..              .+.++++|..+.+.+..+.||...|+++
T Consensus       517 lkfw~f~~k~l~~~l~l~~~~~~iv~hr~s~l~a~~~d--------------df~I~vvD~~t~kvvR~f~gh~nritd~  582 (910)
T KOG1539|consen  517 LKFWDFKKKVLKKSLRLGSSITGIVYHRVSDLLAIALD--------------DFSIRVVDVVTRKVVREFWGHGNRITDM  582 (910)
T ss_pred             EEEEecCCcceeeeeccCCCcceeeeeehhhhhhhhcC--------------ceeEEEEEchhhhhhHHhhccccceeee
Confidence            99999999998888887788888888887766655542              3567888998888888999999999999


Q ss_pred             EECCCCCeeEEEE
Q 021399          295 AFNPDGKRYGFLL  307 (313)
Q Consensus       295 ~fspdgk~~~~~~  307 (313)
                      +||||||.+....
T Consensus       583 ~FS~DgrWlisas  595 (910)
T KOG1539|consen  583 TFSPDGRWLISAS  595 (910)
T ss_pred             EeCCCCcEEEEee
Confidence            9999999976543

>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.89  E-value=1.3e-22  Score=174.71  Aligned_cols=224  Identities=21%  Similarity=0.327  Sum_probs=176.3

Q ss_pred             EEEEc-cCCCEEEEeeCCCCeEEEeCCCCc------EEEEecCCCCceEEEEECCCCCeEEEeeCCCcEEEEECCCCeEE
Q 021399           15 YLKYN-KDGDLLFSCAKDHTPTVWFADNGE------RLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQL   87 (313)
Q Consensus        15 ~~~fs-~~g~~l~s~s~d~~i~iw~~~~~~------~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~v~vWd~~~~~~~   87 (313)
                      .+..+ |.+++|+|||.||.|++|+...-.      .+..++.|..-|..+...-+++.|+|+|.|-+|++|+...+...
T Consensus        29 ~Lq~da~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~~~  108 (735)
T KOG0308|consen   29 ALQLDAPNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGKTLISASSDTTVKVWNAHKDNTF  108 (735)
T ss_pred             hccccCCCCceEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCCceEEecCCceEEEeecccCcch
Confidence            45555 456779999999999999766322      25678899999999998888999999999999999997654210


Q ss_pred             EEecCCCCeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEE-ccCCCEEEEeeC
Q 021399           88 FTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVW-GPLNRTIISAGE  166 (313)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-~~~~~~i~t~~~  166 (313)
                      +                                                  ...+..|...|.+++. -++.+.+|+||-
T Consensus       109 c--------------------------------------------------~stir~H~DYVkcla~~ak~~~lvaSgGL  138 (735)
T KOG0308|consen  109 C--------------------------------------------------MSTIRTHKDYVKCLAYIAKNNELVASGGL  138 (735)
T ss_pred             h--------------------------------------------------HhhhhcccchheeeeecccCceeEEecCC
Confidence            0                                                  0112235556666666 566778999999


Q ss_pred             CCeEEEEECCCCc--eeeec------ccccCceeceEEEEECCCCCEEEEeeCCCcEEEEECCCCcEEEEEe-cCCceeE
Q 021399          167 DAIVRIWDTETGK--LLKES------DKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYV-TERPVNA  237 (313)
Q Consensus       167 d~~i~lwd~~~~~--~~~~~------~~~~~h~~~v~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~-~~~~~~~  237 (313)
                      |+.|.|||++++.  ++..+      ....|+...|.+++-.+.|..|++|+..+-+++||.++.+.+-.+. +...|++
T Consensus       139 D~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t~ivsGgtek~lr~wDprt~~kimkLrGHTdNVr~  218 (735)
T KOG0308|consen  139 DRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTGTIIVSGGTEKDLRLWDPRTCKKIMKLRGHTDNVRV  218 (735)
T ss_pred             CccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCCcceEEEecCcccceEEeccccccceeeeeccccceEE
Confidence            9999999999772  22211      1123788999999999999999999999999999999998887776 4457999


Q ss_pred             EEeccCCCEEEEcccccCceeEeeccCCCceeeeeeehhhhhhhccccccccceeEEEECCCCCe
Q 021399          238 VTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKR  302 (313)
Q Consensus       238 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~fspdgk~  302 (313)
                      +-.+++|..++.++++ +             .|++||+...+++..+..|...||++.-+|+=+.
T Consensus       219 ll~~dDGt~~ls~sSD-g-------------tIrlWdLgqQrCl~T~~vH~e~VWaL~~~~sf~~  269 (735)
T KOG0308|consen  219 LLVNDDGTRLLSASSD-G-------------TIRLWDLGQQRCLATYIVHKEGVWALQSSPSFTH  269 (735)
T ss_pred             EEEcCCCCeEeecCCC-c-------------eEEeeeccccceeeeEEeccCceEEEeeCCCcce
Confidence            9999999988776543 3             3788999888999999999999999999987443

>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]

Probab=99.89  E-value=8.2e-22  Score=163.26  Aligned_cols=199  Identities=17%  Similarity=0.291  Sum_probs=156.4

Q ss_pred             cccccccceeEEEEccCC-CEEEEeeCCCCeEEEeCCCCc-------EEEEecCCCCceEEEEECCC-CCeEEEeeCCCc
Q 021399            5 LMKGHERPLTYLKYNKDG-DLLFSCAKDHTPTVWFADNGE-------RLGTYRGHNGAVWCCDVSRD-SMTLITGSADQT   75 (313)
Q Consensus         5 ~l~~h~~~v~~~~fs~~g-~~l~s~s~d~~i~iw~~~~~~-------~~~~~~~H~~~V~~~~~~~~-~~~l~s~s~D~~   75 (313)
                      .|+||++.=+.|+|++.. -+|++++.|+.|++||+....       ....+.+|+..|..++|++- ..+|++++.|+.
T Consensus       172 ~L~gH~~eg~glsWn~~~~g~Lls~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~  251 (422)
T KOG0264|consen  172 RLKGHEKEGYGLSWNRQQEGTLLSGSDDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGK  251 (422)
T ss_pred             EEEeecccccccccccccceeEeeccCCCcEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCe
Confidence            799999977899999875 489999999999999987432       35678999999999999985 458999999999


Q ss_pred             EEEEECCCCeEEEEecCCCCeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEc
Q 021399           76 AKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWG  155 (313)
Q Consensus        76 v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~  155 (313)
                      +.|||+++++.                                                  ++....++|.++++++.|+
T Consensus       252 L~iwD~R~~~~--------------------------------------------------~~~~~~~ah~~~vn~~~fn  281 (422)
T KOG0264|consen  252 LMIWDTRSNTS--------------------------------------------------KPSHSVKAHSAEVNCVAFN  281 (422)
T ss_pred             EEEEEcCCCCC--------------------------------------------------CCcccccccCCceeEEEeC
Confidence            99999986310                                                  0112335688899999999


Q ss_pred             cCC-CEEEEeeCCCeEEEEECCCCceeeecccccCceeceEEEEECCCCC-EEEEeeCCCcEEEEECCCCcEEEE-----
Q 021399          156 PLN-RTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGS-HFLTGSLDKSAKLWDARTLELIKT-----  228 (313)
Q Consensus       156 ~~~-~~i~t~~~d~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~-~l~s~s~dg~i~iwd~~~~~~~~~-----  228 (313)
                      |-+ ..||||+.|++|+|||+++-+.  .+....+|+..|..|.|+|... .|||++.|+.+.+||+..-...+.     
T Consensus       282 p~~~~ilAT~S~D~tV~LwDlRnL~~--~lh~~e~H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq~~eda~  359 (422)
T KOG0264|consen  282 PFNEFILATGSADKTVALWDLRNLNK--PLHTFEGHEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQSPEDAE  359 (422)
T ss_pred             CCCCceEEeccCCCcEEEeechhccc--CceeccCCCcceEEEEeCCCCCceeEecccCCcEEEEeccccccccChhhhc
Confidence            865 5678999999999999986443  3334468999999999999654 688899999999999865221111     


Q ss_pred             -------Ee---cCCceeEEEeccCCCEEEEcccccC
Q 021399          229 -------YV---TERPVNAVTMSPLLDHVVLGGGQDA  255 (313)
Q Consensus       229 -------~~---~~~~~~~~~~~p~~~~~~~~~~~~~  255 (313)
                             +.   +...|...+|+|....++++...|.
T Consensus       360 dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN  396 (422)
T KOG0264|consen  360 DGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDN  396 (422)
T ss_pred             cCCcceeEEecCcccccccccCCCCCCeEEEEecCCc
Confidence                   22   2346888999999999988877663

>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]

Probab=99.89  E-value=3.5e-21  Score=167.00  Aligned_cols=219  Identities=20%  Similarity=0.290  Sum_probs=171.9

Q ss_pred             cccccccceeE-EEEcc-CCCEEEEeeCCCCeEEEeCCCCcEEEEecCCCCceEEEEECCCCCeEEEeeCCCcEEEEECC
Q 021399            5 LMKGHERPLTY-LKYNK-DGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVE   82 (313)
Q Consensus         5 ~l~~h~~~v~~-~~fs~-~g~~l~s~s~d~~i~iw~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~v~vWd~~   82 (313)
                      .+.+|.+.|.+ ++|-+ ++-.|++|+.|+.|.+|......++++|++|++.|.|++...++. ++|||+|.++++|-+.
T Consensus        52 ~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~i~v~~~~~~~P~~~LkgH~snVC~ls~~~~~~-~iSgSWD~TakvW~~~  130 (745)
T KOG0301|consen   52 AFEGPKGFIANSICYAESDKGRLVVGGMDTTIIVFKLSQAEPLYTLKGHKSNVCSLSIGEDGT-LISGSWDSTAKVWRIG  130 (745)
T ss_pred             ecccCcceeeccceeccccCcceEeecccceEEEEecCCCCchhhhhccccceeeeecCCcCc-eEecccccceEEecch
Confidence            45678888777 88885 445699999999999999999999999999999999999777776 8999999999999875


Q ss_pred             CCeEEEEecCCCCeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEccCCCEEE
Q 021399           83 TGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTII  162 (313)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~  162 (313)
                      +.... ...++.++-.+...+.++++.++.++.+.++..              +..+..+.+|..-|..+++-+++ .|+
T Consensus       131 ~l~~~-l~gH~asVWAv~~l~e~~~vTgsaDKtIklWk~--------------~~~l~tf~gHtD~VRgL~vl~~~-~fl  194 (745)
T KOG0301|consen  131 ELVYS-LQGHTASVWAVASLPENTYVTGSADKTIKLWKG--------------GTLLKTFSGHTDCVRGLAVLDDS-HFL  194 (745)
T ss_pred             hhhcc-cCCcchheeeeeecCCCcEEeccCcceeeeccC--------------CchhhhhccchhheeeeEEecCC-CeE
Confidence            43221 113445566666667777777766655544322              34566788999999999988765 489


Q ss_pred             EeeCCCeEEEEECCCCceeeecccccCceeceEEEEECCCCCEEEEeeCCCcEEEEECCCCcEEEEEecCC-ceeEEEec
Q 021399          163 SAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTER-PVNAVTMS  241 (313)
Q Consensus       163 t~~~d~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~-~~~~~~~~  241 (313)
                      +|++||.|++|++ ++..+.+..   +|+.-+.+++...++..|+|++.|++++||+..  +|.+.+..+. .+=++.+-
T Consensus       195 ScsNDg~Ir~w~~-~ge~l~~~~---ghtn~vYsis~~~~~~~Ivs~gEDrtlriW~~~--e~~q~I~lPttsiWsa~~L  268 (745)
T KOG0301|consen  195 SCSNDGSIRLWDL-DGEVLLEMH---GHTNFVYSISMALSDGLIVSTGEDRTLRIWKKD--ECVQVITLPTTSIWSAKVL  268 (745)
T ss_pred             eecCCceEEEEec-cCceeeeee---ccceEEEEEEecCCCCeEEEecCCceEEEeecC--ceEEEEecCccceEEEEEe
Confidence            9999999999999 566665543   799999999988888899999999999999887  8888887665 56666666


Q ss_pred             cCCCE
Q 021399          242 PLLDH  246 (313)
Q Consensus       242 p~~~~  246 (313)
                      +.++.
T Consensus       269 ~NgDI  273 (745)
T KOG0301|consen  269 LNGDI  273 (745)
T ss_pred             eCCCE
Confidence            67764

>KOG1274 consensus WD40 repeat protein [General function prediction only]

Probab=99.88  E-value=2e-21  Score=173.35  Aligned_cols=195  Identities=16%  Similarity=0.235  Sum_probs=155.3

Q ss_pred             cccccccceeEEEEccCCCEEEEeeCCCCeEEEeCCCCcEEEEecCCCCceEEEEECCCCCeEEEeeCCCcEEEEECCCC
Q 021399            5 LMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETG   84 (313)
Q Consensus         5 ~l~~h~~~v~~~~fs~~g~~l~s~s~d~~i~iw~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~v~vWd~~~~   84 (313)
                      +|...+-++.+++|+.+|++++.||.|-.|++-+..+......+++|+++|.++.|+|.+++||+.+.||+|++||+.++
T Consensus        91 iL~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p~~~fLAvss~dG~v~iw~~~~~  170 (933)
T KOG1274|consen   91 ILARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYDPKGNFLAVSSCDGKVQIWDLQDG  170 (933)
T ss_pred             eeeeeeccceEEEEecCCcEEEeecCceeEEEEeccccchheeecccCCceeeeeEcCCCCEEEEEecCceEEEEEcccc
Confidence            45556678899999999999999999999999999999999999999999999999999999999999999999999987


Q ss_pred             eEEEEecCCCCeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEccCCCEEEEe
Q 021399           85 AQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISA  164 (313)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~t~  164 (313)
                      .+..++..-.+.                                     ....       ....+..+.|+|++..++..
T Consensus       171 ~~~~tl~~v~k~-------------------------------------n~~~-------~s~i~~~~aW~Pk~g~la~~  206 (933)
T KOG1274|consen  171 ILSKTLTGVDKD-------------------------------------NEFI-------LSRICTRLAWHPKGGTLAVP  206 (933)
T ss_pred             hhhhhcccCCcc-------------------------------------cccc-------ccceeeeeeecCCCCeEEee
Confidence            654332110000                                     0000       02345678899999889999


Q ss_pred             eCCCeEEEEECCCCceeeecccccCceeceEEEEECCCCCEEEEeeCCCcEEEEECCCCcEEEEEecCCceeEEEeccCC
Q 021399          165 GEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTERPVNAVTMSPLL  244 (313)
Q Consensus       165 ~~d~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~p~~  244 (313)
                      ..|+.|++++.........+... .+...+.++.|+|+|.|||+++.||.|.|||.++.+.   -.....|.+++|.|+.
T Consensus       207 ~~d~~Vkvy~r~~we~~f~Lr~~-~~ss~~~~~~wsPnG~YiAAs~~~g~I~vWnv~t~~~---~~~~~~Vc~~aw~p~~  282 (933)
T KOG1274|consen  207 PVDNTVKVYSRKGWELQFKLRDK-LSSSKFSDLQWSPNGKYIAASTLDGQILVWNVDTHER---HEFKRAVCCEAWKPNA  282 (933)
T ss_pred             ccCCeEEEEccCCceeheeeccc-ccccceEEEEEcCCCcEEeeeccCCcEEEEecccchh---ccccceeEEEecCCCC
Confidence            99999999999887765444322 2444599999999999999999999999999998322   1123468899999988


Q ss_pred             CEE
Q 021399          245 DHV  247 (313)
Q Consensus       245 ~~~  247 (313)
                      +.+
T Consensus       283 n~i  285 (933)
T KOG1274|consen  283 NAI  285 (933)
T ss_pred             Cee
Confidence            754

>KOG4328 consensus WD40 protein [Function unknown]

Probab=99.88  E-value=6.1e-21  Score=158.28  Aligned_cols=291  Identities=18%  Similarity=0.190  Sum_probs=190.1

Q ss_pred             ccccccccceeEEEEccCC--CEEEEeeCCCCeEEEeCCC----CcEEEEecCCCCceEEEEECCCC-CeEEEeeCCCcE
Q 021399            4 ILMKGHERPLTYLKYNKDG--DLLFSCAKDHTPTVWFADN----GERLGTYRGHNGAVWCCDVSRDS-MTLITGSADQTA   76 (313)
Q Consensus         4 ~~l~~h~~~v~~~~fs~~g--~~l~s~s~d~~i~iw~~~~----~~~~~~~~~H~~~V~~~~~~~~~-~~l~s~s~D~~v   76 (313)
                      .+.+-|...|++++|+|.-  +++++|..-|.|=+||+.+    ...++.+..|.++|.++.|+|.+ ..+++.|.||+|
T Consensus       180 ~v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDGti  259 (498)
T KOG4328|consen  180 NVAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSSSYDGTI  259 (498)
T ss_pred             ceeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheeeeccCcee
Confidence            3556688899999999975  5888899999999999952    33467788999999999999975 488999999999


Q ss_pred             EEEECCCCeEEEEecC---CCCeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEE
Q 021399           77 KLWNVETGAQLFTFNF---DSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAV  153 (313)
Q Consensus        77 ~vWd~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~  153 (313)
                      ++=|++.+.....+..   ..-...++|...+..++...+     .+..++++...     .+.....+..|..+|.++.
T Consensus       260 R~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~-----~G~f~~iD~R~-----~~s~~~~~~lh~kKI~sv~  329 (498)
T KOG4328|consen  260 RLQDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDN-----VGNFNVIDLRT-----DGSEYENLRLHKKKITSVA  329 (498)
T ss_pred             eeeeecchhhHHHhhcCccceeeeeccccCCCccEEEeec-----ccceEEEEeec-----CCccchhhhhhhcccceee
Confidence            9999987643222222   112334445555544443322     11122222211     1122233455777999999


Q ss_pred             EccCC-CEEEEeeCCCeEEEEECCCCceeee-cccccCceeceEEEEECCCCCEEEEeeCCCcEEEEEC----CCCcEEE
Q 021399          154 WGPLN-RTIISAGEDAIVRIWDTETGKLLKE-SDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDA----RTLELIK  227 (313)
Q Consensus       154 ~~~~~-~~i~t~~~d~~i~lwd~~~~~~~~~-~~~~~~h~~~v~~~~~s~~~~~l~s~s~dg~i~iwd~----~~~~~~~  227 (313)
                      ++|.. .+++|+|.|++.+|||++.-..-.. +.....|+..|.++.|||.+-.|++.+.|..|+|||.    ...++..
T Consensus       330 ~NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss~~sa~~~p~~  409 (498)
T KOG4328|consen  330 LNPVCPWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSSCISAKDEPLG  409 (498)
T ss_pred             cCCCCchheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeeccCCceEEeecccccccCCccc
Confidence            99875 4689999999999999875322111 2233469999999999999999999999999999998    4556677


Q ss_pred             EEecCC------ceeEEEeccCCCEEEEcccccCceeEeeccCCCceeeeeeehhhhhhhccccccccce-eEEEECCCC
Q 021399          228 TYVTER------PVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPI-NALAFNPDG  300 (313)
Q Consensus       228 ~~~~~~------~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V-~~~~fspdg  300 (313)
                      ++.+..      ...-.+|.|+...++++.-..  .+-++|...+++...+.|+......-....|.-.. +...=+..|
T Consensus       410 ~I~Hn~~t~RwlT~fKA~W~P~~~li~vg~~~r--~IDv~~~~~~q~v~el~~P~~~tI~~vn~~HP~~~~~~aG~~s~G  487 (498)
T KOG4328|consen  410 TIPHNNRTGRWLTPFKAAWDPDYNLIVVGRYPR--PIDVFDGNGGQMVCELHDPESSTIPSVNEFHPMRDTLAAGGNSSG  487 (498)
T ss_pred             eeeccCcccccccchhheeCCCccEEEEeccCc--ceeEEcCCCCEEeeeccCccccccccceeecccccceeccCCccc
Confidence            776543      244578999877776654333  25555655555444444432211111122344333 444444445


Q ss_pred             CeeEEE
Q 021399          301 KRYGFL  306 (313)
Q Consensus       301 k~~~~~  306 (313)
                      +++.|+
T Consensus       488 ki~vft  493 (498)
T KOG4328|consen  488 KIYVFT  493 (498)
T ss_pred             eEEEEe
Confidence            555554

>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]

Probab=99.88  E-value=1e-20  Score=147.11  Aligned_cols=206  Identities=19%  Similarity=0.262  Sum_probs=157.0

Q ss_pred             cccccccceeEEEEccCCCEEEEeeCCCCeEEEeCCCCcEEEEecCCCCceEEEEECCCCCeEEEeeCC-----CcEEEE
Q 021399            5 LMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSAD-----QTAKLW   79 (313)
Q Consensus         5 ~l~~h~~~v~~~~fs~~g~~l~s~s~d~~i~iw~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D-----~~v~vW   79 (313)
                      ++.||++.|+|+..+-+.+++++|+.|.++++||+++|+++.+++. ..+|..+.|+++|++++.+..+     +.|-++
T Consensus        47 ty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~tGk~la~~k~-~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~f  125 (327)
T KOG0643|consen   47 TYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVETGKQLATWKT-NSPVKRVDFSFGGNLILASTDKQMGYTCFVSVF  125 (327)
T ss_pred             eecCCCceEEEEEecCCcceeeeccccceeEEEEcCCCcEEEEeec-CCeeEEEeeccCCcEEEEEehhhcCcceEEEEE
Confidence            6789999999999999999999999999999999999999999875 5689999999999877665433     568899


Q ss_pred             ECCCC-------eEEEEe-cCCCCeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEE
Q 021399           80 NVETG-------AQLFTF-NFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINR  151 (313)
Q Consensus        80 d~~~~-------~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~  151 (313)
                      |++..       ++...+ .....+..+-|.+.++.++....     ++.+..++..     .+.+.+...+.|...|+.
T Consensus       126 di~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~~ii~Ghe-----~G~is~~da~-----~g~~~v~s~~~h~~~Ind  195 (327)
T KOG0643|consen  126 DIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLGETIIAGHE-----DGSISIYDAR-----TGKELVDSDEEHSSKIND  195 (327)
T ss_pred             EccCChhhhcccCceEEecCCccceeeeeecccCCEEEEecC-----CCcEEEEEcc-----cCceeeechhhhcccccc
Confidence            98732       333333 33456666667775555544322     2223333322     122344455678889999


Q ss_pred             EEEccCCCEEEEeeCCCeEEEEECCCCceeeeccc---------------------------------------------
Q 021399          152 AVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDK---------------------------------------------  186 (313)
Q Consensus       152 ~~~~~~~~~i~t~~~d~~i~lwd~~~~~~~~~~~~---------------------------------------------  186 (313)
                      ++++|+..+|+|++.|.+-++||+.+-..+++...                                             
T Consensus       196 ~q~s~d~T~FiT~s~Dttakl~D~~tl~v~Kty~te~PvN~aaisP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i  275 (327)
T KOG0643|consen  196 LQFSRDRTYFITGSKDTTAKLVDVRTLEVLKTYTTERPVNTAAISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLI  275 (327)
T ss_pred             ccccCCcceEEecccCccceeeeccceeeEEEeeecccccceecccccceEEecCCceeeeeeeecccccchhhhHHHHH
Confidence            99999999999999999999999887655443221                                             


Q ss_pred             -------ccCceeceEEEEECCCCCEEEEeeCCCcEEEEECC
Q 021399          187 -------ETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDAR  221 (313)
Q Consensus       187 -------~~~h~~~v~~~~~s~~~~~l~s~s~dg~i~iwd~~  221 (313)
                             ..+|-+.|++++|+|+|+..+||+.||.||+--.+
T Consensus       276 ~eEEigrvkGHFGPINsvAfhPdGksYsSGGEDG~VR~h~Fd  317 (327)
T KOG0643|consen  276 FEEEIGRVKGHFGPINSVAFHPDGKSYSSGGEDGYVRLHHFD  317 (327)
T ss_pred             HHHHhccccccccCcceeEECCCCcccccCCCCceEEEEEec
Confidence                   12577889999999999999999999999987554

>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]

Probab=99.88  E-value=2.1e-20  Score=148.09  Aligned_cols=235  Identities=16%  Similarity=0.184  Sum_probs=166.5

Q ss_pred             cccccccceeEEEEccCCCEEEEeeCCCCeEEEeCCCCcEEEEecCCCCceEEEEECCCCCeEEEeeCCCcEEEEECCCC
Q 021399            5 LMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETG   84 (313)
Q Consensus         5 ~l~~h~~~v~~~~fs~~g~~l~s~s~d~~i~iw~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~v~vWd~~~~   84 (313)
                      ....|..++.+++|.+ ...+++|+.||.|+.+|+.++... .+..|..+|.|+.+++....++|||+|++|++||.+..
T Consensus        49 ~~~~~~~plL~c~F~d-~~~~~~G~~dg~vr~~Dln~~~~~-~igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~  126 (323)
T KOG1036|consen   49 LKFKHGAPLLDCAFAD-ESTIVTGGLDGQVRRYDLNTGNED-QIGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNK  126 (323)
T ss_pred             hheecCCceeeeeccC-CceEEEeccCceEEEEEecCCcce-eeccCCCceEEEEeeccCCeEEEcccCccEEEEecccc
Confidence            3456899999999986 668899999999999999988753 56779999999999988889999999999999999875


Q ss_pred             eEEEEecCCCCeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEccCCCEEEEe
Q 021399           85 AQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISA  164 (313)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~t~  164 (313)
                      .....+.....+.+++.. ++.++++..+..+.............          ..-..-.-.+.+++.-|++.-++.+
T Consensus       127 ~~~~~~d~~kkVy~~~v~-g~~LvVg~~~r~v~iyDLRn~~~~~q----------~reS~lkyqtR~v~~~pn~eGy~~s  195 (323)
T KOG1036|consen  127 VVVGTFDQGKKVYCMDVS-GNRLVVGTSDRKVLIYDLRNLDEPFQ----------RRESSLKYQTRCVALVPNGEGYVVS  195 (323)
T ss_pred             ccccccccCceEEEEecc-CCEEEEeecCceEEEEEcccccchhh----------hccccceeEEEEEEEecCCCceEEE
Confidence            544444444444444332 44555545443332222211111000          0001112356788888888889999


Q ss_pred             eCCCeEEEEECCCCceeeec-ccccCc---------eeceEEEEECCCCCEEEEeeCCCcEEEEECCCCcEEEEEec-CC
Q 021399          165 GEDAIVRIWDTETGKLLKES-DKETGH---------KKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVT-ER  233 (313)
Q Consensus       165 ~~d~~i~lwd~~~~~~~~~~-~~~~~h---------~~~v~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~-~~  233 (313)
                      +-||+|.+=.+......+.. .....|         -..|++++|+|-...||||+.||.|.+||+.+.+.+.++.. +.
T Consensus       196 SieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~~~tfaTgGsDG~V~~Wd~~~rKrl~q~~~~~~  275 (323)
T KOG1036|consen  196 SIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHPIHGTFATGGSDGIVNIWDLFNRKRLKQLAKYET  275 (323)
T ss_pred             eecceEEEEccCCchHHhhhceeEEeeecccCCceEEEEeceeEeccccceEEecCCCceEEEccCcchhhhhhccCCCC
Confidence            99999887555443211110 001122         24689999999999999999999999999999888887754 46


Q ss_pred             ceeEEEeccCCCEEEEccc
Q 021399          234 PVNAVTMSPLLDHVVLGGG  252 (313)
Q Consensus       234 ~~~~~~~~p~~~~~~~~~~  252 (313)
                      .|..++|+.+|..++++.+
T Consensus       276 SI~slsfs~dG~~LAia~s  294 (323)
T KOG1036|consen  276 SISSLSFSMDGSLLAIASS  294 (323)
T ss_pred             ceEEEEeccCCCeEEEEec
Confidence            7999999999999988764

>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]

Probab=99.88  E-value=7.8e-22  Score=156.38  Aligned_cols=210  Identities=18%  Similarity=0.295  Sum_probs=155.8

Q ss_pred             EEecCCCCceEEEEECCCCCeEEEeeCCCcEEEEECCCC------e------------EEEE-ecCCCCeeEEEeecCCe
Q 021399           46 GTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETG------A------------QLFT-FNFDSPARSVDFAVGDK  106 (313)
Q Consensus        46 ~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~v~vWd~~~~------~------------~~~~-~~~~~~~~~~~~~~~~~  106 (313)
                      ..+..|.+++.+.+|++||.+++|||.|-.|||.|++..      +            .+.+ +.+..++..+.|+|.+.
T Consensus       106 ~ylt~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPre~  185 (430)
T KOG0640|consen  106 KYLTSHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPRET  185 (430)
T ss_pred             EEEeecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecchhh
Confidence            456789999999999999999999999999999998621      0            1122 12445778899999887


Q ss_pred             EEEEEC-CCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEccCCCEEEEeeCCCeEEEEECCCCceeeecc
Q 021399          107 LAVITT-DPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESD  185 (313)
Q Consensus       107 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~t~~~d~~i~lwd~~~~~~~~~~~  185 (313)
                      +++... +....+      .+......   .+....+ ....++.++.|+|.|++++.|.+..+++|||+++-++.-.-.
T Consensus       186 ILiS~srD~tvKl------FDfsK~sa---KrA~K~~-qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~Qcfvsan  255 (430)
T KOG0640|consen  186 ILISGSRDNTVKL------FDFSKTSA---KRAFKVF-QDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVSAN  255 (430)
T ss_pred             eEEeccCCCeEEE------EecccHHH---HHHHHHh-hccceeeeEeecCCCceEEEecCCCceeEEeccceeEeeecC
Confidence            776543 322222      11111000   0000011 113468899999999999999999999999999988866556


Q ss_pred             cccCceeceEEEEECCCCCEEEEeeCCCcEEEEECCCCcEEEEEec---CCceeEEEeccCCCEEEEcccccCceeEeec
Q 021399          186 KETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVT---ERPVNAVTMSPLLDHVVLGGGQDASAVTTTD  262 (313)
Q Consensus       186 ~~~~h~~~v~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~---~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~  262 (313)
                      ....|.+.|+++.+++.|+..+++|.||.|++||--+++|++++..   ...+.+..|..++.+++.+|.+.  .+.+|.
T Consensus       256 Pd~qht~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS--~vkLWE  333 (430)
T KOG0640|consen  256 PDDQHTGAITQVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGKDS--TVKLWE  333 (430)
T ss_pred             cccccccceeEEEecCCccEEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeecCCcc--eeeeee
Confidence            6678999999999999999999999999999999999999998852   44688899999999988876543  344555


Q ss_pred             cCCCc
Q 021399          263 HRAGK  267 (313)
Q Consensus       263 ~~~~~  267 (313)
                      ...++
T Consensus       334 i~t~R  338 (430)
T KOG0640|consen  334 ISTGR  338 (430)
T ss_pred             ecCCc
Confidence            44443

>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.88  E-value=6.5e-20  Score=145.30  Aligned_cols=253  Identities=17%  Similarity=0.270  Sum_probs=168.8

Q ss_pred             ccccccceeEEEEccCCCEEEEeeCCCCeEEEeCCCCc----EEEEecCCCCceEEEEECCC--CCeEEEeeCCCcEEEE
Q 021399            6 MKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGE----RLGTYRGHNGAVWCCDVSRD--SMTLITGSADQTAKLW   79 (313)
Q Consensus         6 l~~h~~~v~~~~fs~~g~~l~s~s~d~~i~iw~~~~~~----~~~~~~~H~~~V~~~~~~~~--~~~l~s~s~D~~v~vW   79 (313)
                      -.+|.+-|+|+.|++.|+++++||.|.+++|||.++..    +-...+.|.++|+.+.|.+.  |+.+++++.|++++||
T Consensus         9 ~s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iW   88 (361)
T KOG2445|consen    9 DSGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIW   88 (361)
T ss_pred             ccCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceeee
Confidence            46899999999999999999999999999999975443    34567899999999999643  8999999999999999


Q ss_pred             ECCCCe---------EEEEe-cCCCCeeEEEeec---CCeEEEEECCCceeccccceeeeeeeCCCCCCCceEE-EecCC
Q 021399           80 NVETGA---------QLFTF-NFDSPARSVDFAV---GDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVL-ILKGP  145 (313)
Q Consensus        80 d~~~~~---------~~~~~-~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~  145 (313)
                      .-...+         ...++ .....+..+.|.|   +-+++.+..++...+.......++.+.........+. ....+
T Consensus        89 EE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~  168 (361)
T KOG2445|consen   89 EEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGKN  168 (361)
T ss_pred             eecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCcccc
Confidence            752111         11122 3456788888887   4566666666655444433332222211111111111 01123


Q ss_pred             CCceEEEEEccC---CCEEEEeeCC-----CeEEEEECCCC-ceeeecccccCceeceEEEEECCCC----CEEEEeeCC
Q 021399          146 QGRINRAVWGPL---NRTIISAGED-----AIVRIWDTETG-KLLKESDKETGHKKTITSLAKAADG----SHFLTGSLD  212 (313)
Q Consensus       146 ~~~i~~~~~~~~---~~~i~t~~~d-----~~i~lwd~~~~-~~~~~~~~~~~h~~~v~~~~~s~~~----~~l~s~s~d  212 (313)
                      ..+..++.|+|.   .++|+.|+.+     +.+.||..... .....+....+|...|++++|.|+-    ..||+++.|
T Consensus       169 ~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr~y~~lAvA~kD  248 (361)
T KOG2445|consen  169 KQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNIGRSYHLLAVATKD  248 (361)
T ss_pred             cCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccccCCceeeEEEeecC
Confidence            456678889865   3578877755     47889986543 3555566667899999999999963    359999999


Q ss_pred             CcEEEEECCCC--------------------cEEEEEe-cCCceeEEEeccCCCEEEEcccccCceeEee
Q 021399          213 KSAKLWDARTL--------------------ELIKTYV-TERPVNAVTMSPLLDHVVLGGGQDASAVTTT  261 (313)
Q Consensus       213 g~i~iwd~~~~--------------------~~~~~~~-~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~  261 (313)
                      | |+||+++..                    +.+..+. +...+=.+.|+-.|.. +++.|+|+ .+.+|
T Consensus       249 g-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGti-LsStGdDG-~VRLW  315 (361)
T KOG2445|consen  249 G-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTGTI-LSSTGDDG-CVRLW  315 (361)
T ss_pred             c-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeeeeE-EeecCCCc-eeeeh
Confidence            9 999998741                    1122222 2346777888877654 44444443 34443

>KOG0302 consensus Ribosome Assembly protein [General function prediction only]

Probab=99.87  E-value=5.8e-21  Score=154.93  Aligned_cols=208  Identities=21%  Similarity=0.357  Sum_probs=158.0

Q ss_pred             ccccccceeEEEEccCC--CEEEEeeCCCCeEEEeCCC----------------CcEEEEecCCCCceEEEEECCCCC-e
Q 021399            6 MKGHERPLTYLKYNKDG--DLLFSCAKDHTPTVWFADN----------------GERLGTYRGHNGAVWCCDVSRDSM-T   66 (313)
Q Consensus         6 l~~h~~~v~~~~fs~~g--~~l~s~s~d~~i~iw~~~~----------------~~~~~~~~~H~~~V~~~~~~~~~~-~   66 (313)
                      ..+|.+.++-++-++-|  .+.++=+..|.|+||++..                .+.+.++.+|.+.=++++|||-.. .
T Consensus       147 ~i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g~  226 (440)
T KOG0302|consen  147 SIPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTGR  226 (440)
T ss_pred             ccccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeecccccccc
Confidence            34577777777777655  4566667889999998763                245778899999999999999432 5


Q ss_pred             EEEeeCCCcEEEEECCCCeEEEEecCCCCeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCC
Q 021399           67 LITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQ  146 (313)
Q Consensus        67 l~s~s~D~~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  146 (313)
                      |+||..-+.|++|.+.++.=.  ..                                               ...+.+|.
T Consensus       227 LlsGDc~~~I~lw~~~~g~W~--vd-----------------------------------------------~~Pf~gH~  257 (440)
T KOG0302|consen  227 LLSGDCVKGIHLWEPSTGSWK--VD-----------------------------------------------QRPFTGHT  257 (440)
T ss_pred             cccCccccceEeeeeccCcee--ec-----------------------------------------------Cccccccc
Confidence            788888899999987764310  00                                               01123577


Q ss_pred             CceEEEEEccCC-CEEEEeeCCCeEEEEECCCCceeeecccccCceeceEEEEECCCCCEEEEeeCCCcEEEEECCC---
Q 021399          147 GRINRAVWGPLN-RTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDART---  222 (313)
Q Consensus       147 ~~i~~~~~~~~~-~~i~t~~~d~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~dg~i~iwd~~~---  222 (313)
                      ..|-.++|+|.. ..|++|+-|+.|+|||++++..-..+. ...|...|+.+.|+.+-.+||+|+.||+++|||+|.   
T Consensus       258 ~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~-~kAh~sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~~~  336 (440)
T KOG0302|consen  258 KSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVS-TKAHNSDVNVISWNRREPLLASGGDDGTLSIWDLRQFKS  336 (440)
T ss_pred             cchhhhccCCccCceEEeeecCceEEEEEecCCCccceeE-eeccCCceeeEEccCCcceeeecCCCceEEEEEhhhccC
Confidence            778889999875 578999999999999999873222211 146999999999999988999999999999999986   


Q ss_pred             CcEEEEEe-cCCceeEEEeccCCCEEEEcccccCceeEeeccC
Q 021399          223 LELIKTYV-TERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHR  264 (313)
Q Consensus       223 ~~~~~~~~-~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~  264 (313)
                      ++++.++. +..+|.++.|+|....+++++|.| ..+.+||..
T Consensus       337 ~~pVA~fk~Hk~pItsieW~p~e~s~iaasg~D-~QitiWDls  378 (440)
T KOG0302|consen  337 GQPVATFKYHKAPITSIEWHPHEDSVIAASGED-NQITIWDLS  378 (440)
T ss_pred             CCcceeEEeccCCeeEEEeccccCceEEeccCC-CcEEEEEee
Confidence            45677775 577999999999998888776655 456667643

>KOG1408 consensus WD40 repeat protein [Function unknown]

Probab=99.87  E-value=7.6e-21  Score=165.68  Aligned_cols=239  Identities=19%  Similarity=0.242  Sum_probs=186.0

Q ss_pred             cccceeEEEEccCCCEEEEeeCCCCeEEEeCCCCcEEEEecCCCCceEEEEECCC---CCeEEEeeCCCcEEEEECCCC-
Q 021399            9 HERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRD---SMTLITGSADQTAKLWNVETG-   84 (313)
Q Consensus         9 h~~~v~~~~fs~~g~~l~s~s~d~~i~iw~~~~~~~~~~~~~H~~~V~~~~~~~~---~~~l~s~s~D~~v~vWd~~~~-   84 (313)
                      ..-++.+++.||+|++|++|..-|.++||++...+....+++|+.+|.|+.|+..   .++|+++|.|..|.|+|+... 
T Consensus       458 ~r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny  537 (1080)
T KOG1408|consen  458 SRFGFRALAVSPDGQHLASGDRGGNLRVYDLQELEYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNY  537 (1080)
T ss_pred             cccceEEEEECCCcceecccCccCceEEEEehhhhhhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEeccccc
Confidence            4557899999999999999999999999999988888889999999999999842   469999999999999998653 


Q ss_pred             eEEEEec-CCCCeeEEEeec-C--CeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecC----CCCceEEEEEcc
Q 021399           85 AQLFTFN-FDSPARSVDFAV-G--DKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKG----PQGRINRAVWGP  156 (313)
Q Consensus        85 ~~~~~~~-~~~~~~~~~~~~-~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~i~~~~~~~  156 (313)
                      .+++++. +...+.++.|.. +  .+++....++.+.+..       .+    ..+.-.....+    ....++++...|
T Consensus       538 ~l~qtld~HSssITsvKFa~~gln~~MiscGADksimFr~-------~q----k~~~g~~f~r~t~t~~ktTlYDm~Vdp  606 (1080)
T KOG1408|consen  538 DLVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMFRV-------NQ----KASSGRLFPRHTQTLSKTTLYDMAVDP  606 (1080)
T ss_pred             chhhhhcccccceeEEEEeecCCceEEEeccCchhhheeh-------hc----cccCceeccccccccccceEEEeeeCC
Confidence            2333332 456778888764 3  2333333333221100       00    00011111111    134678899999


Q ss_pred             CCCEEEEeeCCCeEEEEECCCCceeeecccccCceeceEEEEECCCCCEEEEeeCCCcEEEEECCCCcEEEEEe-cCCce
Q 021399          157 LNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYV-TERPV  235 (313)
Q Consensus       157 ~~~~i~t~~~d~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~-~~~~~  235 (313)
                      ..+++++++.|..|+|||+++++..+.+....+|.+....+...|.|.|+++.+.|.++-++|.-+++|+.+.. +...+
T Consensus       607 ~~k~v~t~cQDrnirif~i~sgKq~k~FKgs~~~eG~lIKv~lDPSgiY~atScsdktl~~~Df~sgEcvA~m~GHsE~V  686 (1080)
T KOG1408|consen  607 TSKLVVTVCQDRNIRIFDIESGKQVKSFKGSRDHEGDLIKVILDPSGIYLATSCSDKTLCFVDFVSGECVAQMTGHSEAV  686 (1080)
T ss_pred             CcceEEEEecccceEEEeccccceeeeecccccCCCceEEEEECCCccEEEEeecCCceEEEEeccchhhhhhcCcchhe
Confidence            99999999999999999999999998888888899999999999999999999999999999999999997765 55678


Q ss_pred             eEEEeccCCCEEEEcccccCcee
Q 021399          236 NAVTMSPLLDHVVLGGGQDASAV  258 (313)
Q Consensus       236 ~~~~~~p~~~~~~~~~~~~~~~~  258 (313)
                      ..+.|.++..+++...|+...++
T Consensus       687 TG~kF~nDCkHlISvsgDgCIFv  709 (1080)
T KOG1408|consen  687 TGVKFLNDCKHLISVSGDGCIFV  709 (1080)
T ss_pred             eeeeecccchhheeecCCceEEE
Confidence            99999999999988777554443

>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]

Probab=99.87  E-value=2.4e-20  Score=161.89  Aligned_cols=259  Identities=23%  Similarity=0.334  Sum_probs=191.1

Q ss_pred             ccccccccceeEEEEccCCCEEEEeeCCCCeEEEeCCCCcE--EEEecCCCCceEE-EEECC-CCCeEEEeeCCCcEEEE
Q 021399            4 ILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGER--LGTYRGHNGAVWC-CDVSR-DSMTLITGSADQTAKLW   79 (313)
Q Consensus         4 ~~l~~h~~~v~~~~fs~~g~~l~s~s~d~~i~iw~~~~~~~--~~~~~~H~~~V~~-~~~~~-~~~~l~s~s~D~~v~vW   79 (313)
                      ..|.||...|..+++.+ +-.++++|.||++++|+-...+-  ...+.+|.+-|.. +++-+ ++-.+++|+.|.++.+|
T Consensus         8 ~~l~gH~~DVr~v~~~~-~~~i~s~sRd~t~~vw~~~~~~~l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~i~v~   86 (745)
T KOG0301|consen    8 HELEGHKSDVRAVAVTD-GVCIISGSRDGTVKVWAKKGKQYLETHAFEGPKGFIANSICYAESDKGRLVVGGMDTTIIVF   86 (745)
T ss_pred             EEeccCccchheeEecC-CeEEeecCCCCceeeeeccCcccccceecccCcceeeccceeccccCcceEeecccceEEEE
Confidence            36889999998888764 45899999999999998755543  3467888888876 77765 44469999999999999


Q ss_pred             ECCCCeEEEEec-CCCCeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEccCC
Q 021399           80 NVETGAQLFTFN-FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLN  158 (313)
Q Consensus        80 d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~  158 (313)
                      .+....+..++. +...+++++...+..++..+.+....+      |.+        ++....+.+|+..|..+..-|..
T Consensus        87 ~~~~~~P~~~LkgH~snVC~ls~~~~~~~iSgSWD~Takv------W~~--------~~l~~~l~gH~asVWAv~~l~e~  152 (745)
T KOG0301|consen   87 KLSQAEPLYTLKGHKSNVCSLSIGEDGTLISGSWDSTAKV------WRI--------GELVYSLQGHTASVWAVASLPEN  152 (745)
T ss_pred             ecCCCCchhhhhccccceeeeecCCcCceEecccccceEE------ecc--------hhhhcccCCcchheeeeeecCCC
Confidence            999988877664 566777777666666555555543332      221        34455688999999988888877


Q ss_pred             CEEEEeeCCCeEEEEECCCCceeeecccccCceeceEEEEECCCCCEEEEeeCCCcEEEEECCCCcEEEEEe-cCCceeE
Q 021399          159 RTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYV-TERPVNA  237 (313)
Q Consensus       159 ~~i~t~~~d~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~-~~~~~~~  237 (313)
                       .++||+.|.+|++|.-  +++++++.   +|.+.|+.+++-+++ .++|++.||.|++|++ +++++.+.. +..-+.+
T Consensus       153 -~~vTgsaDKtIklWk~--~~~l~tf~---gHtD~VRgL~vl~~~-~flScsNDg~Ir~w~~-~ge~l~~~~ghtn~vYs  224 (745)
T KOG0301|consen  153 -TYVTGSADKTIKLWKG--GTLLKTFS---GHTDCVRGLAVLDDS-HFLSCSNDGSIRLWDL-DGEVLLEMHGHTNFVYS  224 (745)
T ss_pred             -cEEeccCcceeeeccC--Cchhhhhc---cchhheeeeEEecCC-CeEeecCCceEEEEec-cCceeeeeeccceEEEE
Confidence             7999999999999985  45666654   799999999998775 4899999999999999 677777765 4556888


Q ss_pred             EEeccCCCEEEEcccccCceeEeeccCCCceeeeeeehhhhhhhcccccccc-ceeEEEECCCCCe
Q 021399          238 VTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFG-PINALAFNPDGKR  302 (313)
Q Consensus       238 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~-~V~~~~fspdgk~  302 (313)
                      +++.+.++.+ +++|.|.             .+++|+..  .+.+.+. |++ -||++.+=++|.+
T Consensus       225 is~~~~~~~I-vs~gEDr-------------tlriW~~~--e~~q~I~-lPttsiWsa~~L~NgDI  273 (745)
T KOG0301|consen  225 ISMALSDGLI-VSTGEDR-------------TLRIWKKD--ECVQVIT-LPTTSIWSAKVLLNGDI  273 (745)
T ss_pred             EEecCCCCeE-EEecCCc-------------eEEEeecC--ceEEEEe-cCccceEEEEEeeCCCE
Confidence            8865555544 4445553             24666654  2333332 444 7888888777766

>KOG0300 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.87  E-value=1.1e-20  Score=150.49  Aligned_cols=223  Identities=21%  Similarity=0.351  Sum_probs=170.6

Q ss_pred             cccccccceeEEEEccCCCEEEEeeCCCCeEEEeCC------C----------------------------------CcE
Q 021399            5 LMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFAD------N----------------------------------GER   44 (313)
Q Consensus         5 ~l~~h~~~v~~~~fs~~g~~l~s~s~d~~i~iw~~~------~----------------------------------~~~   44 (313)
                      ...||.++|+++.|++.+.+++++|.|++..||...      .                                  ..+
T Consensus       185 ~Y~GH~GSVNsikfh~s~~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvP  264 (481)
T KOG0300|consen  185 TYTGHTGSVNSIKFHNSGLLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVP  264 (481)
T ss_pred             eecccccceeeEEeccccceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeee
Confidence            568999999999999999999999999999999611      1                                  012


Q ss_pred             EEEecCCCCceEEEEECCCCCeEEEeeCCCcEEEEECCCCeEEEEec-CCCCeeEEEeecCCeEEEEECCCceeccccce
Q 021399           45 LGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFN-FDSPARSVDFAVGDKLAVITTDPFMELNSAIH  123 (313)
Q Consensus        45 ~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~v~vWd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  123 (313)
                      +..|.+|.+.|.+..|-..|+.++|+|+|.+..+||+++++.+..+. +......+..+|...+++.++.     +...+
T Consensus       265 l~~ltgH~~vV~a~dWL~gg~Q~vTaSWDRTAnlwDVEtge~v~~LtGHd~ELtHcstHptQrLVvTsSr-----DtTFR  339 (481)
T KOG0300|consen  265 LMRLTGHRAVVSACDWLAGGQQMVTASWDRTANLWDVETGEVVNILTGHDSELTHCSTHPTQRLVVTSSR-----DTTFR  339 (481)
T ss_pred             eeeeeccccceEehhhhcCcceeeeeeccccceeeeeccCceeccccCcchhccccccCCcceEEEEecc-----CceeE
Confidence            44678999999999999999999999999999999999999887775 3445555566677777666543     22233


Q ss_pred             eeeeeeCCCCCCCceEEEecCCCCceEEEEEccCCCEEEEeeCCCeEEEEECCCCc-eeeecccccCceeceEEEEECCC
Q 021399          124 VKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGK-LLKESDKETGHKKTITSLAKAAD  202 (313)
Q Consensus       124 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~t~~~d~~i~lwd~~~~~-~~~~~~~~~~h~~~v~~~~~s~~  202 (313)
                      +|+..     .....+.++.||...++++.|..+. .+++|++|.+|++||+++.. ++.++.    -...++.++.+..
T Consensus       340 LWDFR-----eaI~sV~VFQGHtdtVTS~vF~~dd-~vVSgSDDrTvKvWdLrNMRsplATIR----tdS~~NRvavs~g  409 (481)
T KOG0300|consen  340 LWDFR-----EAIQSVAVFQGHTDTVTSVVFNTDD-RVVSGSDDRTVKVWDLRNMRSPLATIR----TDSPANRVAVSKG  409 (481)
T ss_pred             eccch-----hhcceeeeecccccceeEEEEecCC-ceeecCCCceEEEeeeccccCcceeee----cCCccceeEeecC
Confidence            44332     2345678899999999999999865 48999999999999997643 344443    3457888999888


Q ss_pred             CCEEEEeeCCCcEEEEECCCCcEEEEE-----ecCCceeEEEecc
Q 021399          203 GSHFLTGSLDKSAKLWDARTLELIKTY-----VTERPVNAVTMSP  242 (313)
Q Consensus       203 ~~~l~s~s~dg~i~iwd~~~~~~~~~~-----~~~~~~~~~~~~p  242 (313)
                      +..|+.--.+..|++||+....+.+..     -+.+.+.|++|..
T Consensus       410 ~~iIAiPhDNRqvRlfDlnG~RlaRlPrtsRqgHrRMV~c~AW~e  454 (481)
T KOG0300|consen  410 HPIIAIPHDNRQVRLFDLNGNRLARLPRTSRQGHRRMVTCCAWLE  454 (481)
T ss_pred             CceEEeccCCceEEEEecCCCccccCCcccccccceeeeeeeccc
Confidence            888888888889999999865543322     1345688888854

>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]

Probab=99.87  E-value=8.2e-20  Score=153.43  Aligned_cols=196  Identities=22%  Similarity=0.329  Sum_probs=151.7

Q ss_pred             cccccceeEEEEccCCCEEEEeeCCCCeEEEeCCCCcE-----------EE-----------------------------
Q 021399            7 KGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGER-----------LG-----------------------------   46 (313)
Q Consensus         7 ~~h~~~v~~~~fs~~g~~l~s~s~d~~i~iw~~~~~~~-----------~~-----------------------------   46 (313)
                      ..|.+.|.+|+.-.+|.+| ||+.|..|..||-.-.+.           ++                             
T Consensus       284 ~aH~ggv~~L~~lr~Gtll-SGgKDRki~~Wd~~y~k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~  362 (626)
T KOG2106|consen  284 HAHDGGVFSLCMLRDGTLL-SGGKDRKIILWDDNYRKLRETELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGFTL  362 (626)
T ss_pred             eecCCceEEEEEecCccEe-ecCccceEEeccccccccccccCchhcCCeeEEecCCCcEEEeeccceEEEeeecCCceE
Confidence            3899999999999999655 499999999998321100           00                             


Q ss_pred             EecCCCCceEEEEECCCCCeEEEeeCCCcEEEEECCCCeEEEEecCCCCeeEEEeecCCeEEEEECCCceeccccceeee
Q 021399           47 TYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKR  126 (313)
Q Consensus        47 ~~~~H~~~V~~~~~~~~~~~l~s~s~D~~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  126 (313)
                      +..+|..+.|.++.+|+.++++|+++|+.+++|+  +.+++++.....+..++.|+|-+.+++......+.+...     
T Consensus       363 ~v~gh~delwgla~hps~~q~~T~gqdk~v~lW~--~~k~~wt~~~~d~~~~~~fhpsg~va~Gt~~G~w~V~d~-----  435 (626)
T KOG2106|consen  363 TVQGHGDELWGLATHPSKNQLLTCGQDKHVRLWN--DHKLEWTKIIEDPAECADFHPSGVVAVGTATGRWFVLDT-----  435 (626)
T ss_pred             EEEecccceeeEEcCCChhheeeccCcceEEEcc--CCceeEEEEecCceeEeeccCcceEEEeeccceEEEEec-----
Confidence            1147888999999999999999999999999999  677888888889999999999776655544332211110     


Q ss_pred             eeeCCCCCCCceEEEecCCCCceEEEEEccCCCEEEEeeCCCeEEEEECC-CCceeeecccccCceeceEEEEECCCCCE
Q 021399          127 IARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTE-TGKLLKESDKETGHKKTITSLAKAADGSH  205 (313)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~t~~~d~~i~lwd~~-~~~~~~~~~~~~~h~~~v~~~~~s~~~~~  205 (313)
                             .....+..... .++++.+.++|+|.+||.|+.|+.|+||-+. ++..+.+.....+  ..|+.+.||+|+++
T Consensus       436 -------e~~~lv~~~~d-~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~g~~y~r~~k~~g--s~ithLDwS~Ds~~  505 (626)
T KOG2106|consen  436 -------ETQDLVTIHTD-NEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSANGRKYSRVGKCSG--SPITHLDWSSDSQF  505 (626)
T ss_pred             -------ccceeEEEEec-CCceEEEEEcCCCCEEEEecCCCeEEEEEECCCCcEEEEeeeecC--ceeEEeeecCCCce
Confidence                   01123333333 7789999999999999999999999999874 4556666655444  89999999999999


Q ss_pred             EEEeeCCCcEEEEEC
Q 021399          206 FLTGSLDKSAKLWDA  220 (313)
Q Consensus       206 l~s~s~dg~i~iwd~  220 (313)
                      +.+.+-|-.|..|..
T Consensus       506 ~~~~S~d~eiLyW~~  520 (626)
T KOG2106|consen  506 LVSNSGDYEILYWKP  520 (626)
T ss_pred             EEeccCceEEEEEcc
Confidence            999999999999943

>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]

Probab=99.87  E-value=2.6e-20  Score=161.64  Aligned_cols=285  Identities=16%  Similarity=0.255  Sum_probs=194.5

Q ss_pred             ccccccccceeEEEEccCCC---EEEEeeCCCCeEEEeCCCCc---------------------EE----------EEec
Q 021399            4 ILMKGHERPLTYLKYNKDGD---LLFSCAKDHTPTVWFADNGE---------------------RL----------GTYR   49 (313)
Q Consensus         4 ~~l~~h~~~v~~~~fs~~g~---~l~s~s~d~~i~iw~~~~~~---------------------~~----------~~~~   49 (313)
                      ..|.||++-|.+++|...+.   +|+|+|+|..||||.+.-+.                     ..          ..+.
T Consensus       185 ~el~GH~DWIrsl~f~~~~~~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~~is~eall~  264 (764)
T KOG1063|consen  185 AELEGHTDWIRSLAFARLGGDDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEIQYRISFEALLM  264 (764)
T ss_pred             EEeeccchhhhhhhhhccCCCcEEEEecCCceEEEEEEEEecCCccccccccccccccCCceeeeeeeEEEEEehhhhhc
Confidence            46899999999999987654   89999999999999654222                     01          1124


Q ss_pred             CCCCceEEEEECCCCCeEEEeeCCCcEEEEECCCCeEEEEe-----cCCC---CeeEEEeecCCeEEEEECCCceecccc
Q 021399           50 GHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTF-----NFDS---PARSVDFAVGDKLAVITTDPFMELNSA  121 (313)
Q Consensus        50 ~H~~~V~~~~~~~~~~~l~s~s~D~~v~vWd~~~~~~~~~~-----~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~  121 (313)
                      ||++-|.++.|+|.+..|+|+|.|.++.+|...+..-++.-     ....   .-....|.+...+++....     .+.
T Consensus       265 GHeDWV~sv~W~p~~~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~~ii~~g~-----~Gg  339 (764)
T KOG1063|consen  265 GHEDWVYSVWWHPEGLDLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSNVIIAHGR-----TGG  339 (764)
T ss_pred             CcccceEEEEEccchhhheecccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCCCEEEEecc-----cCc
Confidence            99999999999999989999999999999998776443322     1211   1233445555433333211     122


Q ss_pred             ceeeeeeeCCCCCCCceEEEecCCCCceEEEEEccCCCEEEEeeCCCeEEEEECC-CCceeeecccccCceeceEEEEEC
Q 021399          122 IHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTE-TGKLLKESDKETGHKKTITSLAKA  200 (313)
Q Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~t~~~d~~i~lwd~~-~~~~~~~~~~~~~h~~~v~~~~~s  200 (313)
                      .+.|.   ......=.+.....||...|.++.|+|.|+++++.|.|-+=||+-.- ......++....-|...++|+++-
T Consensus       340 ~hlWk---t~d~~~w~~~~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q~~wHEiaRPQiHGyDl~c~~~v  416 (764)
T KOG1063|consen  340 FHLWK---TKDKTFWTQEPVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQQEWHEIARPQIHGYDLTCLSFV  416 (764)
T ss_pred             EEEEe---ccCccceeeccccccccccceeeeecCCCCEEEEeccccceeeecccccccceeeecccccccccceeeehc
Confidence            22332   00000001223457899999999999999999999999999998754 222233444444688999999998


Q ss_pred             CCCCEEEEeeCCCcEEEEECCCC--------------------------------cE---------------EEEE----
Q 021399          201 ADGSHFLTGSLDKSAKLWDARTL--------------------------------EL---------------IKTY----  229 (313)
Q Consensus       201 ~~~~~l~s~s~dg~i~iwd~~~~--------------------------------~~---------------~~~~----  229 (313)
                      +....+++|....-+|+|+....                                +.               ..+.    
T Consensus       417 n~~~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~  496 (764)
T KOG1063|consen  417 NEDLQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAA  496 (764)
T ss_pred             cCCceeeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccC
Confidence            75567888888888888864210                                00               0000    


Q ss_pred             --------------------------ecCCceeEEEeccCCCEEEEcccccCceeEeeccCCCceeeeeeehhhhhhhcc
Q 021399          230 --------------------------VTERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGG  283 (313)
Q Consensus       230 --------------------------~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  283 (313)
                                                -+...+.+++.+|.++.++.++.+...         ....|++|+..+....+.
T Consensus       497 p~~L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~---------ehAvI~lw~t~~W~~~~~  567 (764)
T KOG1063|consen  497 PCELTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLK---------EHAVIRLWNTANWLQVQE  567 (764)
T ss_pred             chhccCCChHHHHHHhccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCc---------cceEEEEEeccchhhhhe
Confidence                                      011136788888888877766544321         233578899888888889


Q ss_pred             ccccccceeEEEECCCCCeeEE
Q 021399          284 VKGHFGPINALAFNPDGKRYGF  305 (313)
Q Consensus       284 ~~~h~~~V~~~~fspdgk~~~~  305 (313)
                      +.+|+-+|+.|+||||||++.-
T Consensus       568 L~~HsLTVT~l~FSpdg~~LLs  589 (764)
T KOG1063|consen  568 LEGHSLTVTRLAFSPDGRYLLS  589 (764)
T ss_pred             ecccceEEEEEEECCCCcEEEE
Confidence            9999999999999999999753

>KOG2048 consensus WD40 repeat protein [General function prediction only]

Probab=99.86  E-value=1.2e-18  Score=151.07  Aligned_cols=234  Identities=18%  Similarity=0.260  Sum_probs=175.3

Q ss_pred             cceeEEEEccCCCEEEEeeCCCCeEEEeCCCCc-EEEEecCCC-CceEEEEECCCCCeEEEeeCCCcEEEEECCCCeEEE
Q 021399           11 RPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGE-RLGTYRGHN-GAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLF   88 (313)
Q Consensus        11 ~~v~~~~fs~~g~~l~s~s~d~~i~iw~~~~~~-~~~~~~~H~-~~V~~~~~~~~~~~l~s~s~D~~v~vWd~~~~~~~~   88 (313)
                      .+|.+++|+.+.+.||.+-.||.|.||++..+= +..++.+++ ..|.+++|++ +..|+|.+.+|.|.-||+.+.++..
T Consensus        26 s~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~w~~~~vi~g~~drsIE~L~W~e-~~RLFS~g~sg~i~EwDl~~lk~~~  104 (691)
T KOG2048|consen   26 SEIVSLAYSHKSNQLAVSRTDGNIEIWNLSNNWFLEPVIHGPEDRSIESLAWAE-GGRLFSSGLSGSITEWDLHTLKQKY  104 (691)
T ss_pred             cceEEEEEeccCCceeeeccCCcEEEEccCCCceeeEEEecCCCCceeeEEEcc-CCeEEeecCCceEEEEecccCceeE
Confidence            468899999999999999999999999988763 455677765 5799999995 5567899999999999999998887


Q ss_pred             EecC-CCCeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEccCCCEEEEeeCC
Q 021399           89 TFNF-DSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGED  167 (313)
Q Consensus        89 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~t~~~d  167 (313)
                      .... ..++-+++.+|.+..+.+.++.-....-.+....+..         -..+.--.+++.++.|+|++..+++|+.|
T Consensus       105 ~~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~---------~r~l~rq~sRvLslsw~~~~~~i~~Gs~D  175 (691)
T KOG2048|consen  105 NIDSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITY---------KRSLMRQKSRVLSLSWNPTGTKIAGGSID  175 (691)
T ss_pred             EecCCCcceeEEEeCCccceEEeecCCceEEEEecCCceEEE---------EeecccccceEEEEEecCCccEEEecccC
Confidence            7654 5677788888877666666543211111111111111         01111124789999999999999999999


Q ss_pred             CeEEEEECCCCceeeec----cc-ccCceeceEEEEECCCCCEEEEeeCCCcEEEEECCCCcEEEEEe-cCCceeEEEec
Q 021399          168 AIVRIWDTETGKLLKES----DK-ETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYV-TERPVNAVTMS  241 (313)
Q Consensus       168 ~~i~lwd~~~~~~~~~~----~~-~~~h~~~v~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~-~~~~~~~~~~~  241 (313)
                      |.|++||..++..+...    .. ..+..-.|+++.+-.++ .|++|.+-|+|++||...+.+++.+. +...+.+++..
T Consensus       176 g~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~-tI~sgDS~G~V~FWd~~~gTLiqS~~~h~adVl~Lav~  254 (691)
T KOG2048|consen  176 GVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRDS-TIASGDSAGTVTFWDSIFGTLIQSHSCHDADVLALAVA  254 (691)
T ss_pred             ceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeecC-cEEEecCCceEEEEcccCcchhhhhhhhhcceeEEEEc
Confidence            99999999988765411    11 11234568888887664 69999999999999999999888775 56789999999


Q ss_pred             cCCCEEEEcccccC
Q 021399          242 PLLDHVVLGGGQDA  255 (313)
Q Consensus       242 p~~~~~~~~~~~~~  255 (313)
                      +..+.++.+|-+..
T Consensus       255 ~~~d~vfsaGvd~~  268 (691)
T KOG2048|consen  255 DNEDRVFSAGVDPK  268 (691)
T ss_pred             CCCCeEEEccCCCc
Confidence            99999888765543

>KOG1408 consensus WD40 repeat protein [Function unknown]

Probab=99.86  E-value=4.5e-20  Score=160.92  Aligned_cols=256  Identities=18%  Similarity=0.248  Sum_probs=186.6

Q ss_pred             EEEEeeCCCCeEEEeCCCCc---EEEE--e--------------------------------cCCCCceEEEEECCCCCe
Q 021399           24 LLFSCAKDHTPTVWFADNGE---RLGT--Y--------------------------------RGHNGAVWCCDVSRDSMT   66 (313)
Q Consensus        24 ~l~s~s~d~~i~iw~~~~~~---~~~~--~--------------------------------~~H~~~V~~~~~~~~~~~   66 (313)
                      -+++||.|++||+|+++.+.   .++.  +                                -+-+..+.+++++|+|+.
T Consensus       394 cF~TCSsD~TIRlW~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~gqh  473 (1080)
T KOG1408|consen  394 CFTTCSSDGTIRLWDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSPDGQH  473 (1080)
T ss_pred             ceeEecCCCcEEEeecccccccceeecccchhhhhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEECCCcce
Confidence            48999999999999988532   1110  0                                012335899999999999


Q ss_pred             EEEeeCCCcEEEEECCCCeEEEEec-CCCCeeEEEeecC---CeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEe
Q 021399           67 LITGSADQTAKLWNVETGAQLFTFN-FDSPARSVDFAVG---DKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLIL  142 (313)
Q Consensus        67 l~s~s~D~~v~vWd~~~~~~~~~~~-~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  142 (313)
                      |++|..-|+++|+++.+-+..+... +...+.++.++..   .++++...     .+..+++.++.+.     -.++..+
T Consensus       474 LAsGDr~GnlrVy~Lq~l~~~~~~eAHesEilcLeyS~p~~~~kLLASas-----rdRlIHV~Dv~rn-----y~l~qtl  543 (1080)
T KOG1408|consen  474 LASGDRGGNLRVYDLQELEYTCFMEAHESEILCLEYSFPVLTNKLLASAS-----RDRLIHVYDVKRN-----YDLVQTL  543 (1080)
T ss_pred             ecccCccCceEEEEehhhhhhhheecccceeEEEeecCchhhhHhhhhcc-----CCceEEEEecccc-----cchhhhh
Confidence            9999999999999998766554443 4566777777642   23322211     1233445544432     2345677


Q ss_pred             cCCCCceEEEEEccCC--CEEEEeeCCCeEEEEECCC----CceeeecccccCceeceEEEEECCCCCEEEEeeCCCcEE
Q 021399          143 KGPQGRINRAVWGPLN--RTIISAGEDAIVRIWDTET----GKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAK  216 (313)
Q Consensus       143 ~~~~~~i~~~~~~~~~--~~i~t~~~d~~i~lwd~~~----~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~dg~i~  216 (313)
                      .+|.+.|+++.|-..|  ..++++|.|..|. |+...    +....+- ........+.+++..|..+++++++.|..|+
T Consensus       544 d~HSssITsvKFa~~gln~~MiscGADksim-Fr~~qk~~~g~~f~r~-t~t~~ktTlYDm~Vdp~~k~v~t~cQDrnir  621 (1080)
T KOG1408|consen  544 DGHSSSITSVKFACNGLNRKMISCGADKSIM-FRVNQKASSGRLFPRH-TQTLSKTTLYDMAVDPTSKLVVTVCQDRNIR  621 (1080)
T ss_pred             cccccceeEEEEeecCCceEEEeccCchhhh-eehhccccCceecccc-ccccccceEEEeeeCCCcceEEEEecccceE
Confidence            8999999999998776  7899999998763 44433    2222111 1112346788999999999999999999999


Q ss_pred             EEECCCCcEEEEEec----CCceeEEEeccCCCEEEEcccccCceeEeeccCCCceeeeeeehhhhhhhcccccccccee
Q 021399          217 LWDARTLELIKTYVT----ERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPIN  292 (313)
Q Consensus       217 iwd~~~~~~~~~~~~----~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~  292 (313)
                      |||+++++..+.+..    +.....+...|.+.+++.++.+..              +.++|-.+++++..+.||++.|+
T Consensus       622 if~i~sgKq~k~FKgs~~~eG~lIKv~lDPSgiY~atScsdkt--------------l~~~Df~sgEcvA~m~GHsE~VT  687 (1080)
T KOG1408|consen  622 IFDIESGKQVKSFKGSRDHEGDLIKVILDPSGIYLATSCSDKT--------------LCFVDFVSGECVAQMTGHSEAVT  687 (1080)
T ss_pred             EEeccccceeeeecccccCCCceEEEEECCCccEEEEeecCCc--------------eEEEEeccchhhhhhcCcchhee
Confidence            999999999999864    345777889999999888776543              45677788999999999999999


Q ss_pred             EEEECCCCCeeEE
Q 021399          293 ALAFNPDGKRYGF  305 (313)
Q Consensus       293 ~~~fspdgk~~~~  305 (313)
                      .+.|.+|-|.+-.
T Consensus       688 G~kF~nDCkHlIS  700 (1080)
T KOG1408|consen  688 GVKFLNDCKHLIS  700 (1080)
T ss_pred             eeeecccchhhee
Confidence            9999999988643

>KOG0269 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.86  E-value=6.7e-21  Score=167.18  Aligned_cols=198  Identities=18%  Similarity=0.298  Sum_probs=154.1

Q ss_pred             cccccccceeEEEEccCC-CEEEEeeCCCCeEEEeCCCCcEEEEecCCCCceEEEEECCC-CCeEEEeeCCCcEEEEECC
Q 021399            5 LMKGHERPLTYLKYNKDG-DLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRD-SMTLITGSADQTAKLWNVE   82 (313)
Q Consensus         5 ~l~~h~~~v~~~~fs~~g-~~l~s~s~d~~i~iw~~~~~~~~~~~~~H~~~V~~~~~~~~-~~~l~s~s~D~~v~vWd~~   82 (313)
                      ++..|+..++++.|++.- .+|+|||+||.|++||+.......++.+...+|..+.|+|. +..|+++...|.+++||++
T Consensus       128 ~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~t~~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlR  207 (839)
T KOG0269|consen  128 VFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSKSTFRSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLR  207 (839)
T ss_pred             HhhhhccceeeeeeccCCccEEEecCCCceEEEEeeecccccccccccchhhhceeeccCCCceEEEecCCceEEEeecc
Confidence            678899999999999764 68999999999999999999888899998899999999984 6799999999999999998


Q ss_pred             CCeEEEEecCCCCeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEccCCCEEE
Q 021399           83 TGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTII  162 (313)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~  162 (313)
                      ....                                                   ....+..|.+++.++.|+|++.+||
T Consensus       208 qp~r---------------------------------------------------~~~k~~AH~GpV~c~nwhPnr~~lA  236 (839)
T KOG0269|consen  208 QPDR---------------------------------------------------CEKKLTAHNGPVLCLNWHPNREWLA  236 (839)
T ss_pred             Cchh---------------------------------------------------HHHHhhcccCceEEEeecCCCceee
Confidence            5321                                                   1123356899999999999999999


Q ss_pred             EeeCCCeEEEEECCCCceeeecccccCceeceEEEEECCCCCE-EEEeeC--CCcEEEEECCCC-cEEEEEec-CCceeE
Q 021399          163 SAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSH-FLTGSL--DKSAKLWDARTL-ELIKTYVT-ERPVNA  237 (313)
Q Consensus       163 t~~~d~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~-l~s~s~--dg~i~iwd~~~~-~~~~~~~~-~~~~~~  237 (313)
                      |||.|++|+|||+.+.+.......  .-...+.+|.|-|...+ |++++.  |..|++||++.. -+..++.. ...+..
T Consensus       237 TGGRDK~vkiWd~t~~~~~~~~tI--nTiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPYIP~~t~~eH~~~vt~  314 (839)
T KOG0269|consen  237 TGGRDKMVKIWDMTDSRAKPKHTI--NTIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRPYIPYATFLEHTDSVTG  314 (839)
T ss_pred             ecCCCccEEEEeccCCCccceeEE--eecceeeeeeeccCccchhhhhhccccceEEEEeeccccccceeeeccCccccc
Confidence            999999999999986543222111  12357889999997664 676664  788999999864 44555543 345677


Q ss_pred             EEeccCCCEEEEcccccC
Q 021399          238 VTMSPLLDHVVLGGGQDA  255 (313)
Q Consensus       238 ~~~~p~~~~~~~~~~~~~  255 (313)
                      ++|......++.+++.|+
T Consensus       315 i~W~~~d~~~l~s~sKD~  332 (839)
T KOG0269|consen  315 IAWDSGDRINLWSCSKDG  332 (839)
T ss_pred             eeccCCCceeeEeecCcc
Confidence            888665455555555554

>KOG1539 consensus WD repeat protein [General function prediction only]

Probab=99.85  E-value=1.1e-19  Score=160.93  Aligned_cols=196  Identities=21%  Similarity=0.305  Sum_probs=162.5

Q ss_pred             ccceeEEEEccCCCEEEEeeCCCCeEEEeCCCCcEEEEe---cCCCCceEEEEECCCCCeEEEeeCCCcEEEEECCCCeE
Q 021399           10 ERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTY---RGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQ   86 (313)
Q Consensus        10 ~~~v~~~~fs~~g~~l~s~s~d~~i~iw~~~~~~~~~~~---~~H~~~V~~~~~~~~~~~l~s~s~D~~v~vWd~~~~~~   86 (313)
                      ...+.+++.++=|++.+-|+..|.|-+++...|...+.+   .+|.++|..++...-++.++|++.||.+++||......
T Consensus       448 ~~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l  527 (910)
T KOG1539|consen  448 DINATAVCVSFCGNFVFIGYSKGTIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVL  527 (910)
T ss_pred             CcceEEEEEeccCceEEEeccCCeEEEEEcccCeeecccccCccccCceeEEEecCCCceEEEccCcceEEEEecCCcce
Confidence            356889999999999999999999999999999999998   58999999999998889999999999999999887654


Q ss_pred             EEEecCCCCeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEccCCCEEEEeeC
Q 021399           87 LFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGE  166 (313)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~t~~~  166 (313)
                      +.......                                                     .+..+..+.....++.+.+
T Consensus       528 ~~~l~l~~-----------------------------------------------------~~~~iv~hr~s~l~a~~~d  554 (910)
T KOG1539|consen  528 KKSLRLGS-----------------------------------------------------SITGIVYHRVSDLLAIALD  554 (910)
T ss_pred             eeeeccCC-----------------------------------------------------CcceeeeeehhhhhhhhcC
Confidence            32222111                                                     1222223333456788889


Q ss_pred             CCeEEEEECCCCceeeecccccCceeceEEEEECCCCCEEEEeeCCCcEEEEECCCCcEEEEEecCCceeEEEeccCCCE
Q 021399          167 DAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTERPVNAVTMSPLLDH  246 (313)
Q Consensus       167 d~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~p~~~~  246 (313)
                      |-.|+++|..+.+..+++.   +|...|++++|||||++|++++.|++||+||+.++.++..+..+.++..+.|+|.++.
T Consensus       555 df~I~vvD~~t~kvvR~f~---gh~nritd~~FS~DgrWlisasmD~tIr~wDlpt~~lID~~~vd~~~~sls~SPngD~  631 (910)
T KOG1539|consen  555 DFSIRVVDVVTRKVVREFW---GHGNRITDMTFSPDGRWLISASMDSTIRTWDLPTGTLIDGLLVDSPCTSLSFSPNGDF  631 (910)
T ss_pred             ceeEEEEEchhhhhhHHhh---ccccceeeeEeCCCCcEEEEeecCCcEEEEeccCcceeeeEecCCcceeeEECCCCCE
Confidence            9999999999887777654   7999999999999999999999999999999999999999998999999999999999


Q ss_pred             EEEcccccCceeEeec
Q 021399          247 VVLGGGQDASAVTTTD  262 (313)
Q Consensus       247 ~~~~~~~~~~~~~~~~  262 (313)
                      ++++-- |.+-+++|-
T Consensus       632 LAT~Hv-d~~gIylWs  646 (910)
T KOG1539|consen  632 LATVHV-DQNGIYLWS  646 (910)
T ss_pred             EEEEEe-cCceEEEEE
Confidence            887643 334455554

>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]

Probab=99.85  E-value=1.7e-20  Score=157.30  Aligned_cols=221  Identities=14%  Similarity=0.222  Sum_probs=169.4

Q ss_pred             eEEEEccCCCEEEEeeCCCCeEEEeCCCCcEEEEecCCCCceEEEEECCCCCeEEEeeCCCcEEEEECCCCeEEEEecCC
Q 021399           14 TYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFNFD   93 (313)
Q Consensus        14 ~~~~fs~~g~~l~s~s~d~~i~iw~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~v~vWd~~~~~~~~~~~~~   93 (313)
                      .|+.......++++|+..+.|+|||+......+.+++|...|+++.++-...++++++..|-|.|-.+.++.....+...
T Consensus        83 ~Cv~~~s~S~y~~sgG~~~~Vkiwdl~~kl~hr~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~tt~f~~~  162 (673)
T KOG4378|consen   83 FCVACASQSLYEISGGQSGCVKIWDLRAKLIHRFLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQKTTTFTID  162 (673)
T ss_pred             HHHhhhhcceeeeccCcCceeeehhhHHHHHhhhccCCcceeEEEEecCCcceeEEeccCCcEEEEecccCccccceecC
Confidence            45555555689999999999999999977777889999999999999988899999999999999988876543322211


Q ss_pred             CCeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEccCCC-EEEEeeCCCeEEE
Q 021399           94 SPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNR-TIISAGEDAIVRI  172 (313)
Q Consensus        94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~i~t~~~d~~i~l  172 (313)
                                                               +++          .+.-+.++|..+ .+.+++++|.|.|
T Consensus       163 -----------------------------------------sgq----------svRll~ys~skr~lL~~asd~G~Vtl  191 (673)
T KOG4378|consen  163 -----------------------------------------SGQ----------SVRLLRYSPSKRFLLSIASDKGAVTL  191 (673)
T ss_pred             -----------------------------------------CCC----------eEEEeecccccceeeEeeccCCeEEE
Confidence                                                     011          112333455444 4567899999999


Q ss_pred             EECCCCceeeecccccCceeceEEEEECCC-CCEEEEeeCCCcEEEEECCCCcEEEEEecCCceeEEEeccCCCEEEEcc
Q 021399          173 WDTETGKLLKESDKETGHKKTITSLAKAAD-GSHFLTGSLDKSAKLWDARTLELIKTYVTERPVNAVTMSPLLDHVVLGG  251 (313)
Q Consensus       173 wd~~~~~~~~~~~~~~~h~~~v~~~~~s~~-~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~  251 (313)
                      ||+....++...  ...|......++|+|- ...|++.+.|..|.+||.+..+....+..+.|..+++|.+.|.+++++.
T Consensus       192 wDv~g~sp~~~~--~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~~l~y~~Plstvaf~~~G~~L~aG~  269 (673)
T KOG4378|consen  192 WDVQGMSPIFHA--SEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQASTDRLTYSHPLSTVAFSECGTYLCAGN  269 (673)
T ss_pred             EeccCCCcccch--hhhccCCcCcceecCCccceEEEecccceEEEeecccccccceeeecCCcceeeecCCceEEEeec
Confidence            999876665433  3469999999999985 4578899999999999999999989888889999999999998877654


Q ss_pred             cccCceeEeeccCCCceeeeeeehhhhhhhccccccccceeEEEECCCC
Q 021399          252 GQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDG  300 (313)
Q Consensus       252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~fspdg  300 (313)
                      ..  +-++.+|.|.           +..++..+.+|...|++|+|-|-.
T Consensus       270 s~--G~~i~YD~R~-----------~k~Pv~v~sah~~sVt~vafq~s~  305 (673)
T KOG4378|consen  270 SK--GELIAYDMRS-----------TKAPVAVRSAHDASVTRVAFQPSP  305 (673)
T ss_pred             CC--ceEEEEeccc-----------CCCCceEeeecccceeEEEeeecc
Confidence            32  2344444333           234566788999999999998764

>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]

Probab=99.85  E-value=5.1e-20  Score=158.57  Aligned_cols=255  Identities=19%  Similarity=0.246  Sum_probs=164.3

Q ss_pred             ccccccceeEEEEccCCCEEEEeeCCCCeEEEeCCCCcEEEE--ecCCCCceEEEEECCCC-CeEEEeeCCCcEEEEECC
Q 021399            6 MKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGT--YRGHNGAVWCCDVSRDS-MTLITGSADQTAKLWNVE   82 (313)
Q Consensus         6 l~~h~~~v~~~~fs~~g~~l~s~s~d~~i~iw~~~~~~~~~~--~~~H~~~V~~~~~~~~~-~~l~s~s~D~~v~vWd~~   82 (313)
                      ...|...|..+.|-|-...|++++.|.+++.||++.+++...  +.||.+.|-+++|.|.+ ..|++|++||.+.|||++
T Consensus        96 ~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R  175 (720)
T KOG0321|consen   96 PLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSRLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCR  175 (720)
T ss_pred             cccccceeEeeccCCCceeEEEccCCceeeeeeeccceeecceeecccccccchhhhccCCCcceeeccCCCcEEEEEEe
Confidence            457999999999999667999999999999999999998877  99999999999999876 489999999999999986


Q ss_pred             CCeEEEEecCCCCeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEE---EEEccCCC
Q 021399           83 TGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINR---AVWGPLNR  159 (313)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~---~~~~~~~~  159 (313)
                      ....-....+...+..  -        ..+.+               .+.............+.+.|.+   +.+..++.
T Consensus       176 ~n~~d~~e~~~~~~~~--~--------~n~~p---------------tpskp~~kr~~k~kA~s~ti~ssvTvv~fkDe~  230 (720)
T KOG0321|consen  176 CNGVDALEEFDNRIYG--R--------HNTAP---------------TPSKPLKKRIRKWKAASNTIFSSVTVVLFKDES  230 (720)
T ss_pred             ccchhhHHHHhhhhhc--c--------ccCCC---------------CCCchhhccccccccccCceeeeeEEEEEeccc
Confidence            5331000000000000  0        00000               0000001111122334444444   55667778


Q ss_pred             EEEEeeC-CCeEEEEECCCCceeeecccc-----cCc---eeceEEEEECCCCCEEEEeeCCCcEEEEECCCCc--EEEE
Q 021399          160 TIISAGE-DAIVRIWDTETGKLLKESDKE-----TGH---KKTITSLAKAADGSHFLTGSLDKSAKLWDARTLE--LIKT  228 (313)
Q Consensus       160 ~i~t~~~-d~~i~lwd~~~~~~~~~~~~~-----~~h---~~~v~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~--~~~~  228 (313)
                      .+|++|. |+.|++||++.....-+....     .-|   .-.+.++.....|.+|.+.+.|+.|++||+.+..  ++..
T Consensus       231 tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCtD~sIy~ynm~s~s~sP~~~  310 (720)
T KOG0321|consen  231 TLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCTDNSIYFYNMRSLSISPVAE  310 (720)
T ss_pred             eeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCCCeEEEEecCCcEEEEeccccCcCchhh
Confidence            8999988 999999999875543222211     112   4467888888889999888889999999998753  2333


Q ss_pred             EecCC---ceeEEEeccCCCEEEEcccccCceeEeeccCCCceeeeeeehh-hhhhhccccccccceeEEEECCC
Q 021399          229 YVTER---PVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKI-LQEEIGGVKGHFGPINALAFNPD  299 (313)
Q Consensus       229 ~~~~~---~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~h~~~V~~~~fspd  299 (313)
                      +.+..   .-..-..+|++.+++.+.. +.. .+            +|... .......+.||.-.|++++|.|-
T Consensus       311 ~sg~~~~sf~vks~lSpd~~~l~SgSs-d~~-ay------------iw~vs~~e~~~~~l~Ght~eVt~V~w~pS  371 (720)
T KOG0321|consen  311 FSGKLNSSFYVKSELSPDDCSLLSGSS-DEQ-AY------------IWVVSSPEAPPALLLGHTREVTTVRWLPS  371 (720)
T ss_pred             ccCcccceeeeeeecCCCCceEeccCC-Ccc-ee------------eeeecCccCChhhhhCcceEEEEEeeccc
Confidence            22211   1122345788777665433 332 22            23321 12234457799999999999875

>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.85  E-value=5.7e-20  Score=148.53  Aligned_cols=232  Identities=19%  Similarity=0.276  Sum_probs=167.5

Q ss_pred             ccccccccceeEEEEccCCCEEEEeeCCCCeEEEeCCCCcEEEEecCCCCceEEEEECCCCCeEEEeeCCCcEEEEECCC
Q 021399            4 ILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVET   83 (313)
Q Consensus         4 ~~l~~h~~~v~~~~fs~~g~~l~s~s~d~~i~iw~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~v~vWd~~~   83 (313)
                      .+++.|.+.|..++++.  ..+++++.|.+|+.|-.+- ..++++-+ ...+..+.-+..+..|+|||.  .|.|||...
T Consensus       103 ~~f~AH~G~V~Gi~v~~--~~~~tvgdDKtvK~wk~~~-~p~~tilg-~s~~~gIdh~~~~~~FaTcGe--~i~IWD~~R  176 (433)
T KOG0268|consen  103 RTFKAHEGLVRGICVTQ--TSFFTVGDDKTVKQWKIDG-PPLHTILG-KSVYLGIDHHRKNSVFATCGE--QIDIWDEQR  176 (433)
T ss_pred             heeecccCceeeEEecc--cceEEecCCcceeeeeccC-Ccceeeec-cccccccccccccccccccCc--eeeeccccc
Confidence            47899999999999987  7899999999999997654 35666654 456777777777789999986  588999987


Q ss_pred             CeEEEEecCC-CCeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEccCCCEEE
Q 021399           84 GAQLFTFNFD-SPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTII  162 (313)
Q Consensus        84 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~  162 (313)
                      ..++..+... ..+.++.|.|-+..+++++..    +..+.+.+.-..    ..-....+   ..+-+.++|+|..-.|+
T Consensus       177 ~~Pv~smswG~Dti~svkfNpvETsILas~~s----DrsIvLyD~R~~----~Pl~KVi~---~mRTN~IswnPeafnF~  245 (433)
T KOG0268|consen  177 DNPVSSMSWGADSISSVKFNPVETSILASCAS----DRSIVLYDLRQA----SPLKKVIL---TMRTNTICWNPEAFNFV  245 (433)
T ss_pred             CCccceeecCCCceeEEecCCCcchheeeecc----CCceEEEecccC----Cccceeee---eccccceecCcccccee
Confidence            7777777654 457788888876655554321    111222221110    00011111   23456789999888899


Q ss_pred             EeeCCCeEEEEECCCCceeeecccccCceeceEEEEECCCCCEEEEeeCCCcEEEEECCCCcEEEEEec--CCceeEEEe
Q 021399          163 SAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVT--ERPVNAVTM  240 (313)
Q Consensus       163 t~~~d~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~--~~~~~~~~~  240 (313)
                      +|++|..++.+|++.-..  .+....+|...|++++|||.|..|+|||.|.+|+||..+.+..-..+..  -+.+.++.|
T Consensus       246 ~a~ED~nlY~~DmR~l~~--p~~v~~dhvsAV~dVdfsptG~EfvsgsyDksIRIf~~~~~~SRdiYhtkRMq~V~~Vk~  323 (433)
T KOG0268|consen  246 AANEDHNLYTYDMRNLSR--PLNVHKDHVSAVMDVDFSPTGQEFVSGSYDKSIRIFPVNHGHSRDIYHTKRMQHVFCVKY  323 (433)
T ss_pred             eccccccceehhhhhhcc--cchhhcccceeEEEeccCCCcchhccccccceEEEeecCCCcchhhhhHhhhheeeEEEE
Confidence            999999999999875332  2334467999999999999999999999999999999988776444432  346899999


Q ss_pred             ccCCCEEEEcccccC
Q 021399          241 SPLLDHVVLGGGQDA  255 (313)
Q Consensus       241 ~p~~~~~~~~~~~~~  255 (313)
                      +.+..+++. |++|+
T Consensus       324 S~Dskyi~S-GSdd~  337 (433)
T KOG0268|consen  324 SMDSKYIIS-GSDDG  337 (433)
T ss_pred             eccccEEEe-cCCCc
Confidence            998887654 44443

>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]

Probab=99.84  E-value=6.2e-20  Score=154.14  Aligned_cols=224  Identities=17%  Similarity=0.198  Sum_probs=174.4

Q ss_pred             ccceeEEEEccCCCEEEEeeCCCCeEEEeCCCCcE--EEEecCCCCceEEEEECCCCCeEEEeeCCCcEEEEECCCCeEE
Q 021399           10 ERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGER--LGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQL   87 (313)
Q Consensus        10 ~~~v~~~~fs~~g~~l~s~s~d~~i~iw~~~~~~~--~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~v~vWd~~~~~~~   87 (313)
                      ...+.++...|||+.|++|+.-.++.|||+...+.  ..++..-.-.-.+++.+||.+++++|..||.|.|||+....  
T Consensus       465 dnyiRSckL~pdgrtLivGGeastlsiWDLAapTprikaeltssapaCyALa~spDakvcFsccsdGnI~vwDLhnq~--  542 (705)
T KOG0639|consen  465 DNYIRSCKLLPDGRTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQT--  542 (705)
T ss_pred             ccceeeeEecCCCceEEeccccceeeeeeccCCCcchhhhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEcccce--
Confidence            45688899999999999999999999999987654  33444434456788999999999999999999999987642  


Q ss_pred             EEecCCCCeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEccCCCEEEEeeCC
Q 021399           88 FTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGED  167 (313)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~t~~~d  167 (313)
                                                                        .+..+.||...+.++.++++|..|.|||-|
T Consensus       543 --------------------------------------------------~VrqfqGhtDGascIdis~dGtklWTGGlD  572 (705)
T KOG0639|consen  543 --------------------------------------------------LVRQFQGHTDGASCIDISKDGTKLWTGGLD  572 (705)
T ss_pred             --------------------------------------------------eeecccCCCCCceeEEecCCCceeecCCCc
Confidence                                                              234567888888999999999999999999


Q ss_pred             CeEEEEECCCCceeeecccccCceeceEEEEECCCCCEEEEeeCCCcEEEEECCCCcEEEEEecCCceeEEEeccCCCEE
Q 021399          168 AIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTERPVNAVTMSPLLDHV  247 (313)
Q Consensus       168 ~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~p~~~~~  247 (313)
                      .+||.||++.++.++.-    .....|.++...|++.+++.|-.++.+.+-.....+.-.--.++.+|.++-|.+.|...
T Consensus       573 ntvRcWDlregrqlqqh----dF~SQIfSLg~cP~~dWlavGMens~vevlh~skp~kyqlhlheScVLSlKFa~cGkwf  648 (705)
T KOG0639|consen  573 NTVRCWDLREGRQLQQH----DFSSQIFSLGYCPTGDWLAVGMENSNVEVLHTSKPEKYQLHLHESCVLSLKFAYCGKWF  648 (705)
T ss_pred             cceeehhhhhhhhhhhh----hhhhhheecccCCCccceeeecccCcEEEEecCCccceeecccccEEEEEEecccCcee
Confidence            99999999887655432    24678999999999999999999999888876654443333567889999999999998


Q ss_pred             EEcccccCceeEeeccCCCceeeeeeehhhhhhhccccccccceeEEEECCCCCeeE
Q 021399          248 VLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKRYG  304 (313)
Q Consensus       248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~fspdgk~~~  304 (313)
                      +..|.++....+...-     ...+|..         + -++.|.+..+|.|.|++.
T Consensus       649 vStGkDnlLnawrtPy-----GasiFqs---------k-E~SsVlsCDIS~ddkyIV  690 (705)
T KOG0639|consen  649 VSTGKDNLLNAWRTPY-----GASIFQS---------K-ESSSVLSCDISFDDKYIV  690 (705)
T ss_pred             eecCchhhhhhccCcc-----ccceeec---------c-ccCcceeeeeccCceEEE
Confidence            8877665443332221     1222221         1 367999999999988753

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=99.84  E-value=5.1e-19  Score=153.42  Aligned_cols=261  Identities=15%  Similarity=0.219  Sum_probs=180.0

Q ss_pred             ceeEEEEccCCCEEEEeeCCCCeEEEeCCCCcEEEEecCCCCceEEEEECCCCCeEEEeeCCCcEEEEECCCCeEEEEec
Q 021399           12 PLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFN   91 (313)
Q Consensus        12 ~v~~~~fs~~g~~l~s~s~d~~i~iw~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~v~vWd~~~~~~~~~~~   91 (313)
                      .|+.++|-|||..|+.+.. ..+.+||..+|.++.++++|.+-|.|++|+.||+.|+||+.|+.|.+|+..- +-+..+.
T Consensus        14 ci~d~afkPDGsqL~lAAg-~rlliyD~ndG~llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~kl-EG~LkYS   91 (1081)
T KOG1538|consen   14 CINDIAFKPDGTQLILAAG-SRLLVYDTSDGTLLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKL-EGILKYS   91 (1081)
T ss_pred             chheeEECCCCceEEEecC-CEEEEEeCCCcccccccccccceEEEEEEccCCceeccCCCceeEEEecccc-cceeeec
Confidence            6899999999998886654 5789999999999999999999999999999999999999999999998542 2344556


Q ss_pred             CCCCeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEccCCCEEEEeeCCCeEE
Q 021399           92 FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVR  171 (313)
Q Consensus        92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~t~~~d~~i~  171 (313)
                      +...+.++.|.|=.+.++...-.      ...+|....       +.+... -...++.+++|..+|.+++.|-.+|+|.
T Consensus        92 H~D~IQCMsFNP~~h~LasCsLs------dFglWS~~q-------K~V~K~-kss~R~~~CsWtnDGqylalG~~nGTIs  157 (1081)
T KOG1538|consen   92 HNDAIQCMSFNPITHQLASCSLS------DFGLWSPEQ-------KSVSKH-KSSSRIICCSWTNDGQYLALGMFNGTIS  157 (1081)
T ss_pred             cCCeeeEeecCchHHHhhhcchh------hccccChhh-------hhHHhh-hhheeEEEeeecCCCcEEEEeccCceEE
Confidence            66777788877744332221100      011111100       000000 0134788999999999999999999999


Q ss_pred             EEECCCCceeeecccccCceeceEEEEECCCCC-----EEEEeeCCCcEEEEECCCCcEEE-EEecCCceeEEEeccCCC
Q 021399          172 IWDTETGKLLKESDKETGHKKTITSLAKAADGS-----HFLTGSLDKSAKLWDARTLELIK-TYVTERPVNAVTMSPLLD  245 (313)
Q Consensus       172 lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~-----~l~s~s~dg~i~iwd~~~~~~~~-~~~~~~~~~~~~~~p~~~  245 (313)
                      |-+.. ++.--.+...-+.+..|.+++|+|...     .++......++.++.+. |+.+. .-..+-...|+++-|.|.
T Consensus       158 iRNk~-gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~Ls-G~~Igk~r~L~FdP~CisYf~NGE  235 (1081)
T KOG1538|consen  158 IRNKN-GEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLS-GKQIGKDRALNFDPCCISYFTNGE  235 (1081)
T ss_pred             eecCC-CCcceEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEec-ceeecccccCCCCchhheeccCCc
Confidence            88643 333222333345678999999998643     46667777777777664 33332 222334567888999999


Q ss_pred             EEEEcccccCceeEeeccCCCceeeeeeehhhhhhhccccccccceeEEEECCCCCeeEE
Q 021399          246 HVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKRYGF  305 (313)
Q Consensus       246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~fspdgk~~~~  305 (313)
                      +++++|++....++.-+               +..++.+-....+||.++..|+|+..+.
T Consensus       236 y~LiGGsdk~L~~fTR~---------------GvrLGTvg~~D~WIWtV~~~PNsQ~v~~  280 (1081)
T KOG1538|consen  236 YILLGGSDKQLSLFTRD---------------GVRLGTVGEQDSWIWTVQAKPNSQYVVV  280 (1081)
T ss_pred             EEEEccCCCceEEEeec---------------CeEEeeccccceeEEEEEEccCCceEEE
Confidence            99998876554333222               2223333334679999999999998654

>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]

Probab=99.84  E-value=1.5e-19  Score=148.00  Aligned_cols=173  Identities=23%  Similarity=0.365  Sum_probs=135.8

Q ss_pred             cceeEEEEccCCC-EEEEeeCCCCeEEEeCCCCc---------EEEEecCCCCceEEEEECCCCCeEEEeeCCCcEEEEE
Q 021399           11 RPLTYLKYNKDGD-LLFSCAKDHTPTVWFADNGE---------RLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWN   80 (313)
Q Consensus        11 ~~v~~~~fs~~g~-~l~s~s~d~~i~iw~~~~~~---------~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~v~vWd   80 (313)
                      .+|+.+.|.+++. +|+||+.|..|+||-++.+.         -+..+..|..+|+++.|+|+|++|+||+.+|.|.+|-
T Consensus        14 ~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lWk   93 (434)
T KOG1009|consen   14 EPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLWK   93 (434)
T ss_pred             CceEEEEeccCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCceEEEEE
Confidence            3789999999987 99999999999999665332         2456789999999999999999999999999999998


Q ss_pred             CCCCeEEEEecCCCCeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEccCCCE
Q 021399           81 VETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRT  160 (313)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~  160 (313)
                      ...- .+  .            +.+.        ....+  .           ..-...+.+.+|...|..++|+|++.+
T Consensus        94 ~~~~-~~--~------------~~d~--------e~~~~--k-----------e~w~v~k~lr~h~~diydL~Ws~d~~~  137 (434)
T KOG1009|consen   94 QGDV-RI--F------------DADT--------EADLN--K-----------EKWVVKKVLRGHRDDIYDLAWSPDSNF  137 (434)
T ss_pred             ecCc-CC--c------------cccc--------hhhhC--c-----------cceEEEEEecccccchhhhhccCCCce
Confidence            6530 00  0            0000        00000  0           000123456678899999999999999


Q ss_pred             EEEeeCCCeEEEEECCCCceeeecccccCceeceEEEEECCCCCEEEEeeCCCcEEEEECCC
Q 021399          161 IISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDART  222 (313)
Q Consensus       161 i~t~~~d~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~dg~i~iwd~~~  222 (313)
                      +++++-|..+++||+..+..++...   .|...+.-++|.|-++++++=+.|...+.+.+..
T Consensus       138 l~s~s~dns~~l~Dv~~G~l~~~~~---dh~~yvqgvawDpl~qyv~s~s~dr~~~~~~~~~  196 (434)
T KOG1009|consen  138 LVSGSVDNSVRLWDVHAGQLLAILD---DHEHYVQGVAWDPLNQYVASKSSDRHPEGFSAKL  196 (434)
T ss_pred             eeeeeccceEEEEEeccceeEeecc---ccccccceeecchhhhhhhhhccCcccceeeeee
Confidence            9999999999999999998877654   6899999999999999999999998777776544

>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]

Probab=99.84  E-value=4.1e-19  Score=145.14  Aligned_cols=196  Identities=24%  Similarity=0.336  Sum_probs=150.4

Q ss_pred             cccccccceeEEEEccC-CCEEEEeeCCCCeEEEeCCCC-------cEEEEecCCCCceEEEEECCC-CCeEEEeeCCCc
Q 021399            5 LMKGHERPLTYLKYNKD-GDLLFSCAKDHTPTVWFADNG-------ERLGTYRGHNGAVWCCDVSRD-SMTLITGSADQT   75 (313)
Q Consensus         5 ~l~~h~~~v~~~~fs~~-g~~l~s~s~d~~i~iw~~~~~-------~~~~~~~~H~~~V~~~~~~~~-~~~l~s~s~D~~   75 (313)
                      ++.||+++|..+.|+|- ...|||||.|.+|.||....+       +.+..+.||...|.-++|+|. .+.|+|+|.|.+
T Consensus        76 ~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~  155 (472)
T KOG0303|consen   76 LVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNT  155 (472)
T ss_pred             CccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCce
Confidence            57899999999999985 579999999999999987654       346788999999999999996 468999999999


Q ss_pred             EEEEECCCCeEEEEecCCCCeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEc
Q 021399           76 AKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWG  155 (313)
Q Consensus        76 v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~  155 (313)
                      |.+||+.+++....                                                    +. |..-|.++.|+
T Consensus       156 v~iWnv~tgeali~----------------------------------------------------l~-hpd~i~S~sfn  182 (472)
T KOG0303|consen  156 VSIWNVGTGEALIT----------------------------------------------------LD-HPDMVYSMSFN  182 (472)
T ss_pred             EEEEeccCCceeee----------------------------------------------------cC-CCCeEEEEEec
Confidence            99999998764321                                                    11 66678899999


Q ss_pred             cCCCEEEEeeCCCeEEEEECCCCceeeecccccCcee-ceEEEEECCCCCEEEEee---CCCcEEEEECCCCc-E--EEE
Q 021399          156 PLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKK-TITSLAKAADGSHFLTGS---LDKSAKLWDARTLE-L--IKT  228 (313)
Q Consensus       156 ~~~~~i~t~~~d~~i~lwd~~~~~~~~~~~~~~~h~~-~v~~~~~s~~~~~l~s~s---~dg~i~iwd~~~~~-~--~~~  228 (313)
                      .+|.+++|.+.|.+|||||.+.++.+.+-.   +|.+ .-..+.|-.+|..+-+|-   ++.++-+||....+ +  +.+
T Consensus       183 ~dGs~l~TtckDKkvRv~dpr~~~~v~e~~---~heG~k~~Raifl~~g~i~tTGfsr~seRq~aLwdp~nl~eP~~~~e  259 (472)
T KOG0303|consen  183 RDGSLLCTTCKDKKVRVIDPRRGTVVSEGV---AHEGAKPARAIFLASGKIFTTGFSRMSERQIALWDPNNLEEPIALQE  259 (472)
T ss_pred             cCCceeeeecccceeEEEcCCCCcEeeecc---cccCCCcceeEEeccCceeeeccccccccceeccCcccccCcceeEE
Confidence            999999999999999999999999887653   3443 233445667888444443   47889999977643 2  233


Q ss_pred             EecCCceeEEEeccCCCEEEEcccccCc
Q 021399          229 YVTERPVNAVTMSPLLDHVVLGGGQDAS  256 (313)
Q Consensus       229 ~~~~~~~~~~~~~p~~~~~~~~~~~~~~  256 (313)
                      +.....+----|.|+...++++|..|++
T Consensus       260 lDtSnGvl~PFyD~dt~ivYl~GKGD~~  287 (472)
T KOG0303|consen  260 LDTSNGVLLPFYDPDTSIVYLCGKGDSS  287 (472)
T ss_pred             eccCCceEEeeecCCCCEEEEEecCCcc
Confidence            3333344445567888888888776654

>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]

Probab=99.83  E-value=1.2e-18  Score=151.55  Aligned_cols=274  Identities=17%  Similarity=0.291  Sum_probs=175.6

Q ss_pred             cccccccceeEEEEccCCC---EEEEeeCCCCeEEEeCCCCc--EEEEecCCCCceEEEEECCCCCeEEEe-eCCCcEEE
Q 021399            5 LMKGHERPLTYLKYNKDGD---LLFSCAKDHTPTVWFADNGE--RLGTYRGHNGAVWCCDVSRDSMTLITG-SADQTAKL   78 (313)
Q Consensus         5 ~l~~h~~~v~~~~fs~~g~---~l~s~s~d~~i~iw~~~~~~--~~~~~~~H~~~V~~~~~~~~~~~l~s~-s~D~~v~v   78 (313)
                      +++||.++|+|+.|-|+.+   .++||+.|+.|++|.+....  .+.++.+|...+.|+.-   .....++ ..|+++.+
T Consensus        49 ~l~GH~a~VnC~~~l~~s~~~a~~vsG~sD~~v~lW~l~~~~~~~i~~~~g~~~~~~cv~a---~~~~~~~~~ad~~v~v  125 (764)
T KOG1063|consen   49 TLDGHVARVNCVHWLPTSEIVAEMVSGDSDGRVILWKLRDEYLIKIYTIQGHCKECVCVVA---RSSVMTCKAADGTVSV  125 (764)
T ss_pred             eccCCccceEEEEEcccccccceEEEccCCCcEEEEEEeehheEEEEeecCcceeEEEEEe---eeeEEEeeccCceEEE
Confidence            6899999999999999887   89999999999999888443  46678888777766542   2233444 78999999


Q ss_pred             EECCCCeEEE--EecCCC---CeeEEEeecCC-eEEE-EECCC-ceeccccceeeeeeeCCCCCCCceEEEecCCCCceE
Q 021399           79 WNVETGAQLF--TFNFDS---PARSVDFAVGD-KLAV-ITTDP-FMELNSAIHVKRIARDPADQGGESVLILKGPQGRIN  150 (313)
Q Consensus        79 Wd~~~~~~~~--~~~~~~---~~~~~~~~~~~-~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  150 (313)
                      ||....+..+  .+.+..   -..++++.+.. .++. ..+.. .+.+         .... ..+-..+..++||...|.
T Consensus       126 w~~~~~e~~~~~~~rf~~k~~ipLcL~~~~~~~~~lla~Ggs~~~v~~---------~s~~-~d~f~~v~el~GH~DWIr  195 (764)
T KOG1063|consen  126 WDKQQDEVFLLAVLRFEIKEAIPLCLAALKNNKTFLLACGGSKFVVDL---------YSSS-ADSFARVAELEGHTDWIR  195 (764)
T ss_pred             eecCCCceeeehheehhhhhHhhHHHhhhccCCcEEEEecCcceEEEE---------eccC-CcceeEEEEeeccchhhh
Confidence            9995555221  121111   11222333322 2222 11111 1111         1111 113456788999999999


Q ss_pred             EEEEccCCC---EEEEeeCCCeEEEEECCCCc---------------------eeeec-------ccccCceeceEEEEE
Q 021399          151 RAVWGPLNR---TIISAGEDAIVRIWDTETGK---------------------LLKES-------DKETGHKKTITSLAK  199 (313)
Q Consensus       151 ~~~~~~~~~---~i~t~~~d~~i~lwd~~~~~---------------------~~~~~-------~~~~~h~~~v~~~~~  199 (313)
                      ++.|...+.   +++++|.|..||||.+.-+.                     .+-++       ....||.+.|+++-|
T Consensus       196 sl~f~~~~~~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~~is~eall~GHeDWV~sv~W  275 (764)
T KOG1063|consen  196 SLAFARLGGDDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEIQYRISFEALLMGHEDWVYSVWW  275 (764)
T ss_pred             hhhhhccCCCcEEEEecCCceEEEEEEEEecCCccccccccccccccCCceeeeeeeEEEEEehhhhhcCcccceEEEEE
Confidence            999975543   78999999999999753222                     00011       113589999999999


Q ss_pred             CCCCCEEEEeeCCCcEEEEECCCCc--EEEEEec---CC---ceeEEEeccCCCEEEEcccccCceeEeeccCCCceeee
Q 021399          200 AADGSHFLTGSLDKSAKLWDARTLE--LIKTYVT---ER---PVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAK  271 (313)
Q Consensus       200 s~~~~~l~s~s~dg~i~iwd~~~~~--~~~~~~~---~~---~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  271 (313)
                      +|.+-.|+|+|.|.++.+|...+..  =+.....   .+   .-...-|+|+++.++.-|-.++  ...|.    ..+..
T Consensus       276 ~p~~~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~~ii~~g~~Gg--~hlWk----t~d~~  349 (764)
T KOG1063|consen  276 HPEGLDLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSNVIIAHGRTGG--FHLWK----TKDKT  349 (764)
T ss_pred             ccchhhheecccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCCCEEEEecccCc--EEEEe----ccCcc
Confidence            9999999999999999999876542  1122111   11   1345668998876655432222  22222    11223


Q ss_pred             eeehhhhhhhccccccccceeEEEECCCCCe
Q 021399          272 FFDKILQEEIGGVKGHFGPINALAFNPDGKR  302 (313)
Q Consensus       272 ~~~~~~~~~~~~~~~h~~~V~~~~fspdgk~  302 (313)
                      +|..     ....+||...|.+|+|+|.|+.
T Consensus       350 ~w~~-----~~~iSGH~~~V~dv~W~psGef  375 (764)
T KOG1063|consen  350 FWTQ-----EPVISGHVDGVKDVDWDPSGEF  375 (764)
T ss_pred             ceee-----ccccccccccceeeeecCCCCE
Confidence            3442     2356899999999999999994

>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]

Probab=99.83  E-value=1e-19  Score=154.69  Aligned_cols=243  Identities=19%  Similarity=0.300  Sum_probs=173.4

Q ss_pred             cccccccceeEEEEccCCCEEEEeeCCCCeEEEeCCC--------CcEEEEecCCCCceEEEEECCCCCeEEEeeCCCcE
Q 021399            5 LMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADN--------GERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTA   76 (313)
Q Consensus         5 ~l~~h~~~v~~~~fs~~g~~l~s~s~d~~i~iw~~~~--------~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~v   76 (313)
                      +|+.|.+.|+.+.|+|....|++++.|+.+++|++..        -+++.+|++|.++|.|+++.++++.++|||.||+|
T Consensus       289 tl~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg~I  368 (577)
T KOG0642|consen  289 TLRSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGIDGTI  368 (577)
T ss_pred             eeecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEeeccCcee
Confidence            6788999999999999999999999999999999832        25689999999999999999999999999999999


Q ss_pred             EEEECCCCeEEEEecCCCCeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEcc
Q 021399           77 KLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGP  156 (313)
Q Consensus        77 ~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~  156 (313)
                      +.|++....-                |++.                      +++    ....-.+.||...+..+.+++
T Consensus       369 ~~w~~p~n~d----------------p~ds----------------------~dp----~vl~~~l~Ghtdavw~l~~s~  406 (577)
T KOG0642|consen  369 RCWNLPPNQD----------------PDDS----------------------YDP----SVLSGTLLGHTDAVWLLALSS  406 (577)
T ss_pred             eeeccCCCCC----------------cccc----------------------cCc----chhccceeccccceeeeeecc
Confidence            9998762110                0000                      000    011224568888999999999


Q ss_pred             CCCEEEEeeCCCeEEEEECCCCceeeecccccCceeceEEEEECCCC-CEEEEeeCCCcEEEEECCCCcEEEEEec----
Q 021399          157 LNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADG-SHFLTGSLDKSAKLWDARTLELIKTYVT----  231 (313)
Q Consensus       157 ~~~~i~t~~~d~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~-~~l~s~s~dg~i~iwd~~~~~~~~~~~~----  231 (313)
                      ...++++++.||++|+|+.....+ +.+... ...+...++++-... .+.++...-+..-+.+.++...+..+..    
T Consensus       407 ~~~~Llscs~DgTvr~w~~~~~~~-~~f~~~-~e~g~Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~  484 (577)
T KOG0642|consen  407 TKDRLLSCSSDGTVRLWEPTEESP-CTFGEP-KEHGYPLSVDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASP  484 (577)
T ss_pred             cccceeeecCCceEEeeccCCcCc-cccCCc-cccCCcceEeeccchhHhhhhhcccccccchhhhhhhheeeccccCCC
Confidence            989999999999999999876555 333221 123344555554322 2222222233333445554444333321    


Q ss_pred             ----CCceeEEEeccCCCEEEEcccccCceeEeeccCCCceeeeeeehhhhhhhccccccccceeEEEECCCCCeeEE
Q 021399          232 ----ERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKRYGF  305 (313)
Q Consensus       232 ----~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~fspdgk~~~~  305 (313)
                          ...++.+.++|..+..+.+ ..+             ..++++|..+++.++...+|...|+++++.|+|-+|..
T Consensus       485 ~~~~~~~in~vVs~~~~~~~~~~-hed-------------~~Ir~~dn~~~~~l~s~~a~~~svtslai~~ng~~l~s  548 (577)
T KOG0642|consen  485 GPRRYPQINKVVSHPTADITFTA-HED-------------RSIRFFDNKTGKILHSMVAHKDSVTSLAIDPNGPYLMS  548 (577)
T ss_pred             cccccCccceEEecCCCCeeEec-ccC-------------CceecccccccccchheeeccceecceeecCCCceEEe
Confidence                1347788888888655543 222             24788999999999999999999999999999887654

>KOG2096 consensus WD40 repeat protein [General function prediction only]

Probab=99.83  E-value=5.9e-19  Score=140.60  Aligned_cols=198  Identities=17%  Similarity=0.243  Sum_probs=151.6

Q ss_pred             ccccceeEEEEccCCCEEEEeeCCCCeEEEeCCCCcEEEEecCCCCceEEEEECCCCCeEEEeeCCCcEEEEECCCCeEE
Q 021399            8 GHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQL   87 (313)
Q Consensus         8 ~h~~~v~~~~fs~~g~~l~s~s~d~~i~iw~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~v~vWd~~~~~~~   87 (313)
                      -|.-.+..+....++++|+|++.|.+|.+|+++ |+.+.++......-...++||+|+++++++-...|++|.+--.+  
T Consensus       185 kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~L~~idtnq~~n~~aavSP~GRFia~~gFTpDVkVwE~~f~k--  261 (420)
T KOG2096|consen  185 KHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQLLQSIDTNQSSNYDAAVSPDGRFIAVSGFTPDVKVWEPIFTK--  261 (420)
T ss_pred             hcccceEEEeecCCceEEEEecCCCcEEEEecC-CceeeeeccccccccceeeCCCCcEEEEecCCCCceEEEEEecc--
Confidence            466677777778889999999999999999998 88888887766677778999999999999999999999742100  


Q ss_pred             EEecCCCCeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEccCCCEEEEeeCC
Q 021399           88 FTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGED  167 (313)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~t~~~d  167 (313)
                                      ++         .+                 .+-..+..++||++.+..++|++++++++|.+.|
T Consensus       262 ----------------dG---------~f-----------------qev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkD  299 (420)
T KOG2096|consen  262 ----------------DG---------TF-----------------QEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKD  299 (420)
T ss_pred             ----------------Cc---------ch-----------------hhhhhhheeccchhheeeeeeCCCcceeEEEecC
Confidence                            00         00                 0123466789999999999999999999999999


Q ss_pred             CeEEEEECCC-------Cceeeec-ccccCceeceEEEEECCCCCEEEEeeCCCcEEEEECCCCcEEEEEe--cCCceeE
Q 021399          168 AIVRIWDTET-------GKLLKES-DKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYV--TERPVNA  237 (313)
Q Consensus       168 ~~i~lwd~~~-------~~~~~~~-~~~~~h~~~v~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~--~~~~~~~  237 (313)
                      |+++|||+.-       .+.+++. .....-......++.+|+|+.||.+ ....++++..++++...++.  +...|.+
T Consensus       300 G~wriwdtdVrY~~~qDpk~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s-~gs~l~~~~se~g~~~~~~e~~h~~~Is~  378 (420)
T KOG2096|consen  300 GKWRIWDTDVRYEAGQDPKILKEGSAPLHAAGSEPVRLELSPSGDSLAVS-FGSDLKVFASEDGKDYPELEDIHSTTISS  378 (420)
T ss_pred             CcEEEeeccceEecCCCchHhhcCCcchhhcCCCceEEEeCCCCcEEEee-cCCceEEEEcccCccchhHHHhhcCceee
Confidence            9999999642       1223322 1111123445588999999976654 45679999999988776664  5678999


Q ss_pred             EEeccCCCEEEEcc
Q 021399          238 VTMSPLLDHVVLGG  251 (313)
Q Consensus       238 ~~~~p~~~~~~~~~  251 (313)
                      ++|+|+|..++++|
T Consensus       379 is~~~~g~~~atcG  392 (420)
T KOG2096|consen  379 ISYSSDGKYIATCG  392 (420)
T ss_pred             EEecCCCcEEeeec
Confidence            99999999887765

>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.83  E-value=2.3e-19  Score=137.94  Aligned_cols=207  Identities=19%  Similarity=0.319  Sum_probs=146.8

Q ss_pred             ccccccccceeEEEEcc--CCCEEEEeeCCCCeEEEeCCCCc--EEEEecCCCCceEEEEECCC--CCeEEEeeCCCcEE
Q 021399            4 ILMKGHERPLTYLKYNK--DGDLLFSCAKDHTPTVWFADNGE--RLGTYRGHNGAVWCCDVSRD--SMTLITGSADQTAK   77 (313)
Q Consensus         4 ~~l~~h~~~v~~~~fs~--~g~~l~s~s~d~~i~iw~~~~~~--~~~~~~~H~~~V~~~~~~~~--~~~l~s~s~D~~v~   77 (313)
                      .+|+||.++|+-++|..  -|..|+|++.||.|.||.-++++  ..+....|+.+|++++|.|.  |-.|+.+++||+|.
T Consensus        50 ~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWke~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vs  129 (299)
T KOG1332|consen   50 AELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWKEENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVS  129 (299)
T ss_pred             eEecCCCCCeeEEeecccccCcEeeEeecCceEEEEecCCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEE
Confidence            47999999999999975  79999999999999999988884  35567789999999999886  45889999999999


Q ss_pred             EEECCCC-e-EEEE--ecCCCCeeEEEeecCC---------------eEEEEECCCceeccccceeeeeeeCCCCCCCce
Q 021399           78 LWNVETG-A-QLFT--FNFDSPARSVDFAVGD---------------KLAVITTDPFMELNSAIHVKRIARDPADQGGES  138 (313)
Q Consensus        78 vWd~~~~-~-~~~~--~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  138 (313)
                      |.+.++. . ....  ..+...+.++.+.|..               +++.+..+      ....+|....+    +=..
T Consensus       130 vl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcD------n~VkiW~~~~~----~w~~  199 (299)
T KOG1332|consen  130 VLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCD------NLVKIWKFDSD----SWKL  199 (299)
T ss_pred             EEEEcCCCCccchhhhhccccccceeeecCcCCCccccccCcccccceeeccCCc------cceeeeecCCc----chhh
Confidence            9998664 1 1111  1234456667766641               11211222      12222222111    0011


Q ss_pred             EEEecCCCCceEEEEEccCC----CEEEEeeCCCeEEEEECCCC-ceeeecccccCceeceEEEEECCCCCEEEEeeCCC
Q 021399          139 VLILKGPQGRINRAVWGPLN----RTIISAGEDAIVRIWDTETG-KLLKESDKETGHKKTITSLAKAADGSHFLTGSLDK  213 (313)
Q Consensus       139 ~~~~~~~~~~i~~~~~~~~~----~~i~t~~~d~~i~lwd~~~~-~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~dg  213 (313)
                      -..+++|..-+..++|.|.-    ..|++|+.||++-||-...- ...+ ..........+..+.||..|+.|+.++.|+
T Consensus       200 e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~e~e~wk-~tll~~f~~~~w~vSWS~sGn~LaVs~GdN  278 (299)
T KOG1332|consen  200 ERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDEEYEPWK-KTLLEEFPDVVWRVSWSLSGNILAVSGGDN  278 (299)
T ss_pred             hhhhhhcchhhhhhhhccccCCCceeeEEecCCCcEEEEEecCccCccc-ccccccCCcceEEEEEeccccEEEEecCCc
Confidence            22378899999999999874    47999999999999976421 1111 111122456799999999999999999999


Q ss_pred             cEEEEECC
Q 021399          214 SAKLWDAR  221 (313)
Q Consensus       214 ~i~iwd~~  221 (313)
                      .+++|.-.
T Consensus       279 kvtlwke~  286 (299)
T KOG1332|consen  279 KVTLWKEN  286 (299)
T ss_pred             EEEEEEeC
Confidence            99999644

>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]

Probab=99.82  E-value=1.8e-19  Score=153.25  Aligned_cols=212  Identities=28%  Similarity=0.384  Sum_probs=150.0

Q ss_pred             cccccccceeEEEEccCCCEEEEeeCCCCeEEEeCCC------C----cEEEEecCCCCceEEEEECCCCCeEEEeeCCC
Q 021399            5 LMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADN------G----ERLGTYRGHNGAVWCCDVSRDSMTLITGSADQ   74 (313)
Q Consensus         5 ~l~~h~~~v~~~~fs~~g~~l~s~s~d~~i~iw~~~~------~----~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~   74 (313)
                      ++++|+++|.|++++++++++++|+-||+|+.|++..      .    .....+.||.+.||.+++|+....|+++|.||
T Consensus       339 tfraH~gPVl~v~v~~n~~~~ysgg~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~Dg  418 (577)
T KOG0642|consen  339 TFRAHEGPVLCVVVPSNGEHCYSGGIDGTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDG  418 (577)
T ss_pred             EEecccCceEEEEecCCceEEEeeccCceeeeeccCCCCCcccccCcchhccceeccccceeeeeecccccceeeecCCc
Confidence            8999999999999999999999999999999995431      1    24567889999999999999988999999999


Q ss_pred             cEEEEECCCCeEEEEecCC---CCeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEec-------C
Q 021399           75 TAKLWNVETGAQLFTFNFD---SPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILK-------G  144 (313)
Q Consensus        75 ~v~vWd~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~  144 (313)
                      |++.|++..... +++...   .-..++++..-        .+...+...........+...  ....+.+.       .
T Consensus       419 Tvr~w~~~~~~~-~~f~~~~e~g~Plsvd~~ss--------~~a~~~~s~~~~~~~~~~~ev--~s~~~~~~s~~~~~~~  487 (577)
T KOG0642|consen  419 TVRLWEPTEESP-CTFGEPKEHGYPLSVDRTSS--------RPAHSLASFRFGYTSIDDMEV--VSDLLIFESSASPGPR  487 (577)
T ss_pred             eEEeeccCCcCc-cccCCccccCCcceEeeccc--------hhHhhhhhcccccccchhhhh--hhheeeccccCCCccc
Confidence            999999877655 222211   11122222211        100000000000000000000  00111111       1


Q ss_pred             CCCceEEEEEccCCCEEEEeeCCCeEEEEECCCCceeeecccccCceeceEEEEECCCCCEEEEeeCCCcEEEEECCCCc
Q 021399          145 PQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLE  224 (313)
Q Consensus       145 ~~~~i~~~~~~~~~~~i~t~~~d~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~  224 (313)
                      ....++.++++|.....+++.+|+.|+++|..+++++...   ..|...++++++.|+|-+|++++.|+.+++|.+....
T Consensus       488 ~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~~~~~l~s~---~a~~~svtslai~~ng~~l~s~s~d~sv~l~kld~k~  564 (577)
T KOG0642|consen  488 RYPQINKVVSHPTADITFTAHEDRSIRFFDNKTGKILHSM---VAHKDSVTSLAIDPNGPYLMSGSHDGSVRLWKLDVKT  564 (577)
T ss_pred             ccCccceEEecCCCCeeEecccCCceecccccccccchhe---eeccceecceeecCCCceEEeecCCceeehhhccchh
Confidence            1245788899999999999999999999999998876433   3588999999999999999999999999999998777


Q ss_pred             EEEEEe
Q 021399          225 LIKTYV  230 (313)
Q Consensus       225 ~~~~~~  230 (313)
                      |+....
T Consensus       565 ~~~es~  570 (577)
T KOG0642|consen  565 CVLEST  570 (577)
T ss_pred             eeeccc
Confidence            766543

>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]

Probab=99.82  E-value=1.4e-19  Score=152.03  Aligned_cols=185  Identities=24%  Similarity=0.339  Sum_probs=156.3

Q ss_pred             ceeEEEEccCCCEEEEeeCCCCeEEEeCCCCcEEEEecCCCCceEEEEECCCCCeEEEeeCCCcEEEEECCCCeEEEEec
Q 021399           12 PLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFN   91 (313)
Q Consensus        12 ~v~~~~fs~~g~~l~s~s~d~~i~iw~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~v~vWd~~~~~~~~~~~   91 (313)
                      ..+.|+.+||.+..+++..||.|.|||+.+...++.|+||.+.+.||.+++||..|-|||-|.+||-||++++.......
T Consensus       511 aCyALa~spDakvcFsccsdGnI~vwDLhnq~~VrqfqGhtDGascIdis~dGtklWTGGlDntvRcWDlregrqlqqhd  590 (705)
T KOG0639|consen  511 ACYALAISPDAKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISKDGTKLWTGGLDNTVRCWDLREGRQLQQHD  590 (705)
T ss_pred             hhhhhhcCCccceeeeeccCCcEEEEEcccceeeecccCCCCCceeEEecCCCceeecCCCccceeehhhhhhhhhhhhh
Confidence            45678999999999999999999999999999999999999999999999999999999999999999999876443221


Q ss_pred             CCCCeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEccCCCEEEEeeCCCeEE
Q 021399           92 FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVR  171 (313)
Q Consensus        92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~t~~~d~~i~  171 (313)
                      +                                                     .+.|.++-.+|.+..++.|=+.+.+.
T Consensus       591 F-----------------------------------------------------~SQIfSLg~cP~~dWlavGMens~ve  617 (705)
T KOG0639|consen  591 F-----------------------------------------------------SSQIFSLGYCPTGDWLAVGMENSNVE  617 (705)
T ss_pred             h-----------------------------------------------------hhhheecccCCCccceeeecccCcEE
Confidence            1                                                     13455666788889999999999888


Q ss_pred             EEECCCCceeeecccccCceeceEEEEECCCCCEEEEeeCCCcEEEEECCCCcEEEEEecCCceeEEEeccCCCEEEEcc
Q 021399          172 IWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTERPVNAVTMSPLLDHVVLGG  251 (313)
Q Consensus       172 lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~  251 (313)
                      |-........+    ..-|...|.++.|++.|++++|.+.|+.+..|..--|..+.+.....++.++..+.+..+++++.
T Consensus       618 vlh~skp~kyq----lhlheScVLSlKFa~cGkwfvStGkDnlLnawrtPyGasiFqskE~SsVlsCDIS~ddkyIVTGS  693 (705)
T KOG0639|consen  618 VLHTSKPEKYQ----LHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSKESSSVLSCDISFDDKYIVTGS  693 (705)
T ss_pred             EEecCCcccee----ecccccEEEEEEecccCceeeecCchhhhhhccCccccceeeccccCcceeeeeccCceEEEecC
Confidence            87765433322    12488999999999999999999999999999988888888777777899999998888888776


Q ss_pred             cc
Q 021399          252 GQ  253 (313)
Q Consensus       252 ~~  253 (313)
                      |+
T Consensus       694 Gd  695 (705)
T KOG0639|consen  694 GD  695 (705)
T ss_pred             CC
Confidence            64

>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]

Probab=99.81  E-value=4.5e-18  Score=145.76  Aligned_cols=288  Identities=19%  Similarity=0.262  Sum_probs=176.6

Q ss_pred             cccccccceeEEEEccCCCEEEEeeCCCCeEEEeCCCCcEEEEecCCCCceEEEEECCCCC-eEEEeeCCCcEEEEECCC
Q 021399            5 LMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSM-TLITGSADQTAKLWNVET   83 (313)
Q Consensus         5 ~l~~h~~~v~~~~fs~~g~~l~s~s~d~~i~iw~~~~~~~~~~~~~H~~~V~~~~~~~~~~-~l~s~s~D~~v~vWd~~~   83 (313)
                      +.+||++.|.|++.+|.|.+|++|+.||+||||.+.++++++++.- .+.|.|++|+|.+. .++.++.+..+.|-+..-
T Consensus       395 vyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~~-d~~I~~vaw~P~~~~~vLAvA~~~~~~ivnp~~  473 (733)
T KOG0650|consen  395 VYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQF-DSEIRSVAWNPLSDLCVLAVAVGECVLIVNPIF  473 (733)
T ss_pred             eEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEee-cceeEEEEecCCCCceeEEEEecCceEEeCccc
Confidence            6789999999999999999999999999999999999999988764 56899999999875 233334444465555433


Q ss_pred             CeEEEE------ec-C----CCCeeEEEeecC-----C-eEE-EEECCCce-eccccceeeeeeeCCCCCCCceEEE---
Q 021399           84 GAQLFT------FN-F----DSPARSVDFAVG-----D-KLA-VITTDPFM-ELNSAIHVKRIARDPADQGGESVLI---  141 (313)
Q Consensus        84 ~~~~~~------~~-~----~~~~~~~~~~~~-----~-~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~---  141 (313)
                      |..+..      +. .    ......+.|...     . .++ .+...+.+ .+.-...-..++....+.....+++   
T Consensus       474 G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~VliHQL  553 (733)
T KOG0650|consen  474 GDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGNKSVLIHQL  553 (733)
T ss_pred             cchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCCcceEEEEec
Confidence            321110      00 0    011122233321     0 011 11111100 0000000001111111111112221   


Q ss_pred             --------ecCCCCceEEEEEccCCCEEEEeeCCCeEEEEECCCCceeeecccccCceeceEEEEECCCCCEEEEeeCCC
Q 021399          142 --------LKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDK  213 (313)
Q Consensus       142 --------~~~~~~~i~~~~~~~~~~~i~t~~~d~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~dg  213 (313)
                              +.-..+.+..+.|+|...++++++. ..|+|||+....+++++.   .....|..++.+|.|..|+.|+.|+
T Consensus       554 SK~~sQ~PF~kskG~vq~v~FHPs~p~lfVaTq-~~vRiYdL~kqelvKkL~---tg~kwiS~msihp~GDnli~gs~d~  629 (733)
T KOG0650|consen  554 SKRKSQSPFRKSKGLVQRVKFHPSKPYLFVATQ-RSVRIYDLSKQELVKKLL---TGSKWISSMSIHPNGDNLILGSYDK  629 (733)
T ss_pred             ccccccCchhhcCCceeEEEecCCCceEEEEec-cceEEEehhHHHHHHHHh---cCCeeeeeeeecCCCCeEEEecCCC
Confidence                    1122356788999999999998885 579999998766665543   2456899999999999999999999


Q ss_pred             cEEEEECCCC-cEEEEEe-cCCceeEEEeccCCCEEEEcccccCceeEeeccCCCceeeeeeehhhhhhhccccccccc-
Q 021399          214 SAKLWDARTL-ELIKTYV-TERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGP-  290 (313)
Q Consensus       214 ~i~iwd~~~~-~~~~~~~-~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~-  290 (313)
                      .+..+|+.-. ++.+++. +...++.|+||+...-++ ++++|+.++..+..-...+    .....--+++.+.||... 
T Consensus       630 k~~WfDldlsskPyk~lr~H~~avr~Va~H~ryPLfa-s~sdDgtv~Vfhg~VY~Dl----~qnpliVPlK~L~gH~~~~  704 (733)
T KOG0650|consen  630 KMCWFDLDLSSKPYKTLRLHEKAVRSVAFHKRYPLFA-SGSDDGTVIVFHGMVYNDL----LQNPLIVPLKRLRGHEKTN  704 (733)
T ss_pred             eeEEEEcccCcchhHHhhhhhhhhhhhhhccccceee-eecCCCcEEEEeeeeehhh----hcCCceEeeeeccCceeec
Confidence            9999998754 4555554 566789999999877443 3344444443322111111    001122345678899877 


Q ss_pred             ---eeEEEECCCCCe
Q 021399          291 ---INALAFNPDGKR  302 (313)
Q Consensus       291 ---V~~~~fspdgk~  302 (313)
                         |.+..|+|..-.
T Consensus       705 ~~gVLd~~wHP~qpW  719 (733)
T KOG0650|consen  705 DLGVLDTIWHPRQPW  719 (733)
T ss_pred             ccceEeecccCCCce
Confidence               999999997544

>KOG2048 consensus WD40 repeat protein [General function prediction only]

Probab=99.81  E-value=4.6e-17  Score=141.39  Aligned_cols=233  Identities=17%  Similarity=0.286  Sum_probs=169.3

Q ss_pred             cccccccc-ceeEEEEccCCCEEEEeeCCCCeEEEeCCCCcEEEEecCCCCceEEEEECCCCCeEEEeeCCCcEEEEECC
Q 021399            4 ILMKGHER-PLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVE   82 (313)
Q Consensus         4 ~~l~~h~~-~v~~~~fs~~g~~l~s~s~d~~i~iw~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~v~vWd~~   82 (313)
                      .++.||++ .|..++|+ ++..|+|.+.+|.|.-||+.++++++.++.-.+.||+++.+|.+..++.|+.||.+...+..
T Consensus        62 ~vi~g~~drsIE~L~W~-e~~RLFS~g~sg~i~EwDl~~lk~~~~~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~  140 (691)
T KOG2048|consen   62 PVIHGPEDRSIESLAWA-EGGRLFSSGLSGSITEWDLHTLKQKYNIDSNGGAIWSIAINPENTILAIGCDDGVLYDFSIG  140 (691)
T ss_pred             EEEecCCCCceeeEEEc-cCCeEEeecCCceEEEEecccCceeEEecCCCcceeEEEeCCccceEEeecCCceEEEEecC
Confidence            45666666 58999999 57799999999999999999999999999999999999999999999999999988888888


Q ss_pred             CCeEEEEecC---CCCeeEEEeecCCe-EEEEECCCceeccccceeeeeeeCCCCCCCceEE----EecCCC---Cc-eE
Q 021399           83 TGAQLFTFNF---DSPARSVDFAVGDK-LAVITTDPFMELNSAIHVKRIARDPADQGGESVL----ILKGPQ---GR-IN  150 (313)
Q Consensus        83 ~~~~~~~~~~---~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~---~~-i~  150 (313)
                      .++......+   ...+.+++|.+.+. ++.++.+..+      +.|+...      +..+.    .+.+-.   .. +.
T Consensus       141 p~~I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~Dg~I------riwd~~~------~~t~~~~~~~~d~l~k~~~~iVW  208 (691)
T KOG2048|consen  141 PDKITYKRSLMRQKSRVLSLSWNPTGTKIAGGSIDGVI------RIWDVKS------GQTLHIITMQLDRLSKREPTIVW  208 (691)
T ss_pred             CceEEEEeecccccceEEEEEecCCccEEEecccCceE------EEEEcCC------CceEEEeeecccccccCCceEEE
Confidence            7776655433   35677888888776 4444444323      2232211      11111    011111   11 23


Q ss_pred             EEEEccCCCEEEEeeCCCeEEEEECCCCceeeecccccCceeceEEEEECCCCCEEEEeeCCCcEEEEECCCCcE--EEE
Q 021399          151 RAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLEL--IKT  228 (313)
Q Consensus       151 ~~~~~~~~~~i~t~~~d~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~--~~~  228 (313)
                      ++.+- ....|++|...|+|..||...+.+++..   ..|...|.+++..++++++++++.|++|.-+...+...  +..
T Consensus       209 Sv~~L-rd~tI~sgDS~G~V~FWd~~~gTLiqS~---~~h~adVl~Lav~~~~d~vfsaGvd~~ii~~~~~~~~~~wv~~  284 (691)
T KOG2048|consen  209 SVLFL-RDSTIASGDSAGTVTFWDSIFGTLIQSH---SCHDADVLALAVADNEDRVFSAGVDPKIIQYSLTTNKSEWVIN  284 (691)
T ss_pred             EEEEe-ecCcEEEecCCceEEEEcccCcchhhhh---hhhhcceeEEEEcCCCCeEEEccCCCceEEEEecCCccceeee
Confidence            33333 3456999999999999999999877544   46899999999999999999999999999998877643  111


Q ss_pred             ---EecCCceeEEEeccCCCEEEEcccccCc
Q 021399          229 ---YVTERPVNAVTMSPLLDHVVLGGGQDAS  256 (313)
Q Consensus       229 ---~~~~~~~~~~~~~p~~~~~~~~~~~~~~  256 (313)
                         ..+...+.+++.-+.   .+++||.|..
T Consensus       285 ~~r~~h~hdvrs~av~~~---~l~sgG~d~~  312 (691)
T KOG2048|consen  285 SRRDLHAHDVRSMAVIEN---ALISGGRDFT  312 (691)
T ss_pred             ccccCCcccceeeeeecc---eEEecceeeE
Confidence               124567888887764   5566665543

>KOG0270 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.80  E-value=3.3e-18  Score=141.69  Aligned_cols=193  Identities=20%  Similarity=0.324  Sum_probs=143.5

Q ss_pred             cccccceeEEEEccC-CCEEEEeeCCCCeEEEeCCCCcEEEEecCCCCceEEEEECCC-CCeEEEeeCCCcEEEEECCCC
Q 021399            7 KGHERPLTYLKYNKD-GDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRD-SMTLITGSADQTAKLWNVETG   84 (313)
Q Consensus         7 ~~h~~~v~~~~fs~~-g~~l~s~s~d~~i~iw~~~~~~~~~~~~~H~~~V~~~~~~~~-~~~l~s~s~D~~v~vWd~~~~   84 (313)
                      .+|++.|..|+|... ...|||||.|.+|++||++++++..++..|.+.|.+++|+|. .+.|++||.|++|.+.|.+..
T Consensus       240 ~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~lWD~~~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~  319 (463)
T KOG0270|consen  240 SGHTDAVLALSWNRNFRNVLASGSADKTVKLWDVDTGKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDP  319 (463)
T ss_pred             ccchHHHHHHHhccccceeEEecCCCceEEEEEcCCCCcceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCc
Confidence            379999999999876 469999999999999999999999999999999999999985 579999999999999998752


Q ss_pred             eEEEEecCCCCeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEccCC-CEEEE
Q 021399           85 AQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLN-RTIIS  163 (313)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~i~t  163 (313)
                      ...          ...|..                                          .+.|-.+.|.|.. ..+++
T Consensus       320 ~~s----------~~~wk~------------------------------------------~g~VEkv~w~~~se~~f~~  347 (463)
T KOG0270|consen  320 SNS----------GKEWKF------------------------------------------DGEVEKVAWDPHSENSFFV  347 (463)
T ss_pred             ccc----------CceEEe------------------------------------------ccceEEEEecCCCceeEEE
Confidence            110          000100                                          1233445555543 45778


Q ss_pred             eeCCCeEEEEECCCC-ceeeecccccCceeceEEEEECCC-CCEEEEeeCCCcEEEEECCCCcEEEEEec---CCceeEE
Q 021399          164 AGEDAIVRIWDTETG-KLLKESDKETGHKKTITSLAKAAD-GSHFLTGSLDKSAKLWDARTLELIKTYVT---ERPVNAV  238 (313)
Q Consensus       164 ~~~d~~i~lwd~~~~-~~~~~~~~~~~h~~~v~~~~~s~~-~~~l~s~s~dg~i~iwd~~~~~~~~~~~~---~~~~~~~  238 (313)
                      +..||+++=+|+++. +++-+.   ..|.+.|.++++++. ..++++++.|+.+++|++..-.+-....+   -....|.
T Consensus       348 ~tddG~v~~~D~R~~~~~vwt~---~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~~~v~~~~~~~~rl~c~  424 (463)
T KOG0270|consen  348 STDDGTVYYFDIRNPGKPVWTL---KAHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSPKSVKEHSFKLGRLHCF  424 (463)
T ss_pred             ecCCceEEeeecCCCCCceeEE---EeccCCcceEEecCCCCcceeeccccceEEEEeecCCCCcccccccccccceeec
Confidence            889999999999775 454443   369999999998765 44688999999999999875443221111   1126677


Q ss_pred             EeccCCCEEEEccccc
Q 021399          239 TMSPLLDHVVLGGGQD  254 (313)
Q Consensus       239 ~~~p~~~~~~~~~~~~  254 (313)
                      ++.|.-...++.||..
T Consensus       425 ~~~~~~a~~la~GG~k  440 (463)
T KOG0270|consen  425 ALDPDVAFTLAFGGEK  440 (463)
T ss_pred             ccCCCcceEEEecCcc
Confidence            7888877777766654

>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]

Probab=99.80  E-value=1.1e-19  Score=160.89  Aligned_cols=230  Identities=23%  Similarity=0.431  Sum_probs=159.4

Q ss_pred             cccccccceeEEEEccCCCEEEEeeCCCCeEEEeCCCCcEEEEecCCCCceEEEEECCCCCeEEEeeCCCcEEEEECCCC
Q 021399            5 LMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETG   84 (313)
Q Consensus         5 ~l~~h~~~v~~~~fs~~g~~l~s~s~d~~i~iw~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~v~vWd~~~~   84 (313)
                      -|.||...|+|+.|+..|.++++|+.|..++||..+++.++..++||++.|+.++.+.++..++++|.|..|++|.+.++
T Consensus       185 rLlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIrvWrl~~~  264 (1113)
T KOG0644|consen  185 RLLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVSSNNTMIAAASNDKVIRVWRLPDG  264 (1113)
T ss_pred             HHHhhhhheeeeeeccccceEeecCccceeeeeeccchhhhccCCCCccccchhccchhhhhhhhcccCceEEEEecCCC
Confidence            57899999999999999999999999999999999999999999999999999999998889999999999999998765


Q ss_pred             eEEEEecCCCCeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEccCCCEEEEe
Q 021399           85 AQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISA  164 (313)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~t~  164 (313)
                      .+                                                    +.++.+|.+.|+.++|+|    +.+.
T Consensus       265 ~p----------------------------------------------------vsvLrghtgavtaiafsP----~~ss  288 (1113)
T KOG0644|consen  265 AP----------------------------------------------------VSVLRGHTGAVTAIAFSP----RASS  288 (1113)
T ss_pred             ch----------------------------------------------------HHHHhccccceeeeccCc----cccC
Confidence            43                                                    334568899999999999    3478


Q ss_pred             eCCCeEEEEECCCCceeeec-cc-ccCceeceEEEEECCCCCEEEEeeC-------------------------------
Q 021399          165 GEDAIVRIWDTETGKLLKES-DK-ETGHKKTITSLAKAADGSHFLTGSL-------------------------------  211 (313)
Q Consensus       165 ~~d~~i~lwd~~~~~~~~~~-~~-~~~h~~~v~~~~~s~~~~~l~s~s~-------------------------------  211 (313)
                      +.||++++||.+-- .+... .. .......+.++.+-.++..++|++.                               
T Consensus       289 s~dgt~~~wd~r~~-~~~y~prp~~~~~~~~~~s~~~~~~~~~f~Tgs~d~ea~n~e~~~l~~~~~~lif~t~ssd~~~~  367 (1113)
T KOG0644|consen  289 SDDGTCRIWDARLE-PRIYVPRPLKFTEKDLVDSILFENNGDRFLTGSRDGEARNHEFEQLAWRSNLLIFVTRSSDLSSI  367 (1113)
T ss_pred             CCCCceEecccccc-ccccCCCCCCcccccceeeeeccccccccccccCCcccccchhhHhhhhccceEEEecccccccc
Confidence            89999999997611 10000 00 0001122222223233333333333                               


Q ss_pred             ------CCcEEEEECCCCcEEEEEe-cCCceeEEEeccCCCEEEEcccccCceeEeeccCCCceeeeeeehhhhhhhc-c
Q 021399          212 ------DKSAKLWDARTLELIKTYV-TERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIG-G  283 (313)
Q Consensus       212 ------dg~i~iwd~~~~~~~~~~~-~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~  283 (313)
                            +-.+.+|++-++....... +...+..+.+||....+..++|.|+..             .+||.-.+.+++ .
T Consensus       368 ~~~ar~~~~~~vwnl~~g~l~H~l~ghsd~~yvLd~Hpfn~ri~msag~dgst-------------~iwdi~eg~pik~y  434 (1113)
T KOG0644|consen  368 VVTARNDHRLCVWNLYTGQLLHNLMGHSDEVYVLDVHPFNPRIAMSAGYDGST-------------IIWDIWEGIPIKHY  434 (1113)
T ss_pred             ceeeeeeeEeeeeecccchhhhhhcccccceeeeeecCCCcHhhhhccCCCce-------------EeeecccCCcceee
Confidence                  3334556666655444432 234567778888887777777766542             234433333322 2


Q ss_pred             ccccccceeEEEECCCCCeeEE
Q 021399          284 VKGHFGPINALAFNPDGKRYGF  305 (313)
Q Consensus       284 ~~~h~~~V~~~~fspdgk~~~~  305 (313)
                      +.+| +.+.+-+||+||.-+++
T Consensus       435 ~~gh-~kl~d~kFSqdgts~~l  455 (1113)
T KOG0644|consen  435 FIGH-GKLVDGKFSQDGTSIAL  455 (1113)
T ss_pred             eccc-ceeeccccCCCCceEec
Confidence            3454 45667799999988765

>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]

Probab=99.78  E-value=5.3e-18  Score=135.67  Aligned_cols=217  Identities=18%  Similarity=0.319  Sum_probs=138.0

Q ss_pred             cccccccceeEEEEccCC-CEEEEeeCCCCeEEEeCCCCcEEEEe---cCCCCceEEEEECCCCCeEEEeeCCCcEEEEE
Q 021399            5 LMKGHERPLTYLKYNKDG-DLLFSCAKDHTPTVWFADNGERLGTY---RGHNGAVWCCDVSRDSMTLITGSADQTAKLWN   80 (313)
Q Consensus         5 ~l~~h~~~v~~~~fs~~g-~~l~s~s~d~~i~iw~~~~~~~~~~~---~~H~~~V~~~~~~~~~~~l~s~s~D~~v~vWd   80 (313)
                      -+++|..+|+.+.|.|+. ++++++|+|..||+|++.+..++..|   +||++.|.++.|+++|..++|+|.|.++++|+
T Consensus       130 ~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG~egHrdeVLSvD~~~~gd~i~ScGmDhslk~W~  209 (385)
T KOG1034|consen  130 NYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFGGVEGHRDEVLSVDFSLDGDRIASCGMDHSLKLWR  209 (385)
T ss_pred             ceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEecccccccCcEEEEEEcCCCCeeeccCCcceEEEEe
Confidence            478999999999999986 69999999999999999999998877   57999999999999999999999999999999


Q ss_pred             CCCCeEE----EEecCC-----CCe--eEEE---eec--------------CCeEEEEECCCceeccccceeeeeeeC--
Q 021399           81 VETGAQL----FTFNFD-----SPA--RSVD---FAV--------------GDKLAVITTDPFMELNSAIHVKRIARD--  130 (313)
Q Consensus        81 ~~~~~~~----~~~~~~-----~~~--~~~~---~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~--  130 (313)
                      +...+..    ....+.     .|.  ....   |+.              ++.++.-+.++.+..+...++.+-...  
T Consensus       210 l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~gd~ilSkscenaI~~w~pgkl~e~~~~vk  289 (385)
T KOG1034|consen  210 LNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWFGDFILSKSCENAIVCWKPGKLEESIHNVK  289 (385)
T ss_pred             cChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchHHHHHHHhhheeecccCceEEEEecchhhhhhhccC
Confidence            9843311    111000     000  0000   000              111111111111111111011000000  


Q ss_pred             CCCCCCceEEEecCCCCceEEE--EEccCCCEEEEeeCCCeEEEEECCCCceeeec-ccccCceeceEEEEECCCCCEEE
Q 021399          131 PADQGGESVLILKGPQGRINRA--VWGPLNRTIISAGEDAIVRIWDTETGKLLKES-DKETGHKKTITSLAKAADGSHFL  207 (313)
Q Consensus       131 ~~~~~~~~~~~~~~~~~~i~~~--~~~~~~~~i~t~~~d~~i~lwd~~~~~~~~~~-~~~~~h~~~v~~~~~s~~~~~l~  207 (313)
                      +..........++-+...|.-+  .+.|-++.+|.|...|.|.+||++...+.... ....--...|+..+|+.||..|+
T Consensus       290 p~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~la~gnq~g~v~vwdL~~~ep~~~ttl~~s~~~~tVRQ~sfS~dgs~lv  369 (385)
T KOG1034|consen  290 PPESATTILGEFDYPMCDIWFIRFAFDPWQKMLALGNQSGKVYVWDLDNNEPPKCTTLTHSKSGSTVRQTSFSRDGSILV  369 (385)
T ss_pred             CCccceeeeeEeccCccceEEEEEeecHHHHHHhhccCCCcEEEEECCCCCCccCceEEeccccceeeeeeecccCcEEE
Confidence            0000111122333334444433  45577788999999999999999876542111 11112346788999999999999


Q ss_pred             EeeCCCcEEEEECC
Q 021399          208 TGSLDKSAKLWDAR  221 (313)
Q Consensus       208 s~s~dg~i~iwd~~  221 (313)
                      ....|++|-=||..
T Consensus       370 ~vcdd~~Vwrwdrv  383 (385)
T KOG1034|consen  370 LVCDDGTVWRWDRV  383 (385)
T ss_pred             EEeCCCcEEEEEee
Confidence            99999999888853

>KOG2055 consensus WD40 repeat protein [General function prediction only]

Probab=99.78  E-value=1.6e-17  Score=138.31  Aligned_cols=232  Identities=15%  Similarity=0.234  Sum_probs=167.0

Q ss_pred             cceeEEEEccCCC-EEEEeeCCCCeEEEeCCCCcE--EEEecCCC-CceEEEEECCCCCeEEEeeCCCcEEEEECCCCeE
Q 021399           11 RPLTYLKYNKDGD-LLFSCAKDHTPTVWFADNGER--LGTYRGHN-GAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQ   86 (313)
Q Consensus        11 ~~v~~~~fs~~g~-~l~s~s~d~~i~iw~~~~~~~--~~~~~~H~-~~V~~~~~~~~~~~l~s~s~D~~v~vWd~~~~~~   86 (313)
                      -+|.+++|.|+|+ .+++++.-.....||+.+.+.  ++...+++ ..+....+++++++++.+|..|.|.+--..+++.
T Consensus       258 fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~el  337 (514)
T KOG2055|consen  258 FPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAKVTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKEL  337 (514)
T ss_pred             CccceeeecCCCceEEEecccceEEEEeeccccccccccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhhhhh
Confidence            3688999999999 999999999999999998864  44556665 3456778899999999999999999887776655


Q ss_pred             EEEecCCCCeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEccCCCEEEEeeC
Q 021399           87 LFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGE  166 (313)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~t~~~  166 (313)
                      +..+..                                                     .+.+..+.|+.+++.|+.++.
T Consensus       338 i~s~Ki-----------------------------------------------------eG~v~~~~fsSdsk~l~~~~~  364 (514)
T KOG2055|consen  338 ITSFKI-----------------------------------------------------EGVVSDFTFSSDSKELLASGG  364 (514)
T ss_pred             hheeee-----------------------------------------------------ccEEeeEEEecCCcEEEEEcC
Confidence            432211                                                     245667778888888999999


Q ss_pred             CCeEEEEECCCCceeeecccccCceeceEEEEECCCCCEEEEeeCCCcEEEEECCC------CcEEEEEe-cCCceeEEE
Q 021399          167 DAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDART------LELIKTYV-TERPVNAVT  239 (313)
Q Consensus       167 d~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~dg~i~iwd~~~------~~~~~~~~-~~~~~~~~~  239 (313)
                      +|.|.+||+++..++.++...  -.-.-++++.++++.++|+||..|-|.|||.++      .+++..+. ....|..+.
T Consensus       365 ~GeV~v~nl~~~~~~~rf~D~--G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~dNLtt~Itsl~  442 (514)
T KOG2055|consen  365 TGEVYVWNLRQNSCLHRFVDD--GSVHGTSLCISLNGSYLATGSDSGIVNIYDGNSCFASTNPKPIKTVDNLTTAITSLQ  442 (514)
T ss_pred             CceEEEEecCCcceEEEEeec--CccceeeeeecCCCceEEeccCcceEEEeccchhhccCCCCchhhhhhhheeeeeee
Confidence            999999999998877765321  122346788899999999999999999999654      23444432 234688999


Q ss_pred             eccCCCEEEEcccccCceeEeeccCCCceeeeeeehhhhhhhccccccccceeEEEECCCCCeeEEE
Q 021399          240 MSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKRYGFL  306 (313)
Q Consensus       240 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~fspdgk~~~~~  306 (313)
                      |+|+.+.+++++..-...+.+.....-. --+.|... ++       --+.|+|++|||.|-+||+=
T Consensus       443 Fn~d~qiLAiaS~~~knalrLVHvPS~T-VFsNfP~~-n~-------~vg~vtc~aFSP~sG~lAvG  500 (514)
T KOG2055|consen  443 FNHDAQILAIASRVKKNALRLVHVPSCT-VFSNFPTS-NT-------KVGHVTCMAFSPNSGYLAVG  500 (514)
T ss_pred             eCcchhhhhhhhhccccceEEEecccee-eeccCCCC-CC-------cccceEEEEecCCCceEEee
Confidence            9999998888765433333322211100 01223322 11       13578999999999888763

>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.78  E-value=1.4e-18  Score=158.78  Aligned_cols=227  Identities=19%  Similarity=0.276  Sum_probs=169.5

Q ss_pred             ccceeEEEEccCCCE----EEEeeCCCCeEEEeCCCC------cEEEEecCCCCceEEEEECCCC-CeEEEeeCCCcEEE
Q 021399           10 ERPLTYLKYNKDGDL----LFSCAKDHTPTVWFADNG------ERLGTYRGHNGAVWCCDVSRDS-MTLITGSADQTAKL   78 (313)
Q Consensus        10 ~~~v~~~~fs~~g~~----l~s~s~d~~i~iw~~~~~------~~~~~~~~H~~~V~~~~~~~~~-~~l~s~s~D~~v~v   78 (313)
                      ....+.|+|.+.|..    |+.|..||.|.+||...-      ..+.+++-|++.|..+.|++.. ++++||+.||.|.|
T Consensus        64 ~~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~i  143 (1049)
T KOG0307|consen   64 SNRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILI  143 (1049)
T ss_pred             cccceeeeecccCCCccceeeccccCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEE
Confidence            345678999998876    899999999999987652      3467788999999999999875 49999999999999


Q ss_pred             EECCCCeEEEEecCCCCeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEccC-
Q 021399           79 WNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPL-  157 (313)
Q Consensus        79 Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-  157 (313)
                      ||+...+.-...             +                                     -....+.|.++.|+.. 
T Consensus       144 WDlnn~~tP~~~-------------~-------------------------------------~~~~~~eI~~lsWNrkv  173 (1049)
T KOG0307|consen  144 WDLNKPETPFTP-------------G-------------------------------------SQAPPSEIKCLSWNRKV  173 (1049)
T ss_pred             eccCCcCCCCCC-------------C-------------------------------------CCCCcccceEeccchhh
Confidence            998753211000             0                                     0012345667777654 


Q ss_pred             CCEEEEeeCCCeEEEEECCCCceeeecccccCceeceEEEEECCCCCE-EEEeeCCC---cEEEEECCC-CcEEEEEe-c
Q 021399          158 NRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSH-FLTGSLDK---SAKLWDART-LELIKTYV-T  231 (313)
Q Consensus       158 ~~~i~t~~~d~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~-l~s~s~dg---~i~iwd~~~-~~~~~~~~-~  231 (313)
                      ...|++++.+|+.-|||++..+.+-.+.... .+..+..++|+|+... |++++.|.   .|.+||+|. ..+++++. |
T Consensus       174 qhILAS~s~sg~~~iWDlr~~~pii~ls~~~-~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~assP~k~~~~H  252 (1049)
T KOG0307|consen  174 SHILASGSPSGRAVIWDLRKKKPIIKLSDTP-GRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFASSPLKILEGH  252 (1049)
T ss_pred             hHHhhccCCCCCceeccccCCCcccccccCC-CccceeeeeeCCCCceeeeeecCCCCCceeEeecccccCCchhhhccc
Confidence            3457889999999999999877665554322 2345778999998664 66666543   589999885 45666663 5


Q ss_pred             CCceeEEEeccCCCEEEEcccccCceeEeeccCCCceeeeeeehhhhhhhccccccccceeEEEECCCC
Q 021399          232 ERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDG  300 (313)
Q Consensus       232 ~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~fspdg  300 (313)
                      ...+.+++|++.+..+++++|.|..             +..|+.++++.+.++..-..++..+.|.|-.
T Consensus       253 ~~GilslsWc~~D~~lllSsgkD~~-------------ii~wN~~tgEvl~~~p~~~nW~fdv~w~pr~  308 (1049)
T KOG0307|consen  253 QRGILSLSWCPQDPRLLLSSGKDNR-------------IICWNPNTGEVLGELPAQGNWCFDVQWCPRN  308 (1049)
T ss_pred             ccceeeeccCCCCchhhhcccCCCC-------------eeEecCCCceEeeecCCCCcceeeeeecCCC
Confidence            6679999999999888888776653             3467888888888888888899999999873

>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.78  E-value=1.2e-17  Score=137.65  Aligned_cols=200  Identities=22%  Similarity=0.168  Sum_probs=144.0

Q ss_pred             eEEEEccCCCEEEEeeCCCCeEEEeCCCCcEEEEecCCCCceEEEEECCCCCeEEEeeCCCcEEEEECCCCeEEEEecC-
Q 021399           14 TYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFNF-   92 (313)
Q Consensus        14 ~~~~fs~~g~~l~s~s~d~~i~iw~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~v~vWd~~~~~~~~~~~~-   92 (313)
                      .+++|+++|..|++++.||.+|||+...-..+..+..|.++|.++.|+|||+++++-+.| ..+||+..++..+..... 
T Consensus       148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~~t~~  226 (398)
T KOG0771|consen  148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALARKTPF  226 (398)
T ss_pred             eEEEEcCCCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhhhcCCc
Confidence            579999999999999999999999988888888889999999999999999999999999 999999999865543331 


Q ss_pred             --CCCeeEEEeecCC---eEEEEE-CCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEccCCCEEEEeeC
Q 021399           93 --DSPARSVDFAVGD---KLAVIT-TDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGE  166 (313)
Q Consensus        93 --~~~~~~~~~~~~~---~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~t~~~  166 (313)
                        +.-...+.|..++   .+.+.. ..+.    ..+...++............ ........|.++..+++|++++.|+.
T Consensus       227 ~k~~~~~~cRF~~d~~~~~l~laa~~~~~----~~v~~~~~~~w~~~~~l~~~-~~~~~~~siSsl~VS~dGkf~AlGT~  301 (398)
T KOG0771|consen  227 SKDEMFSSCRFSVDNAQETLRLAASQFPG----GGVRLCDISLWSGSNFLRLR-KKIKRFKSISSLAVSDDGKFLALGTM  301 (398)
T ss_pred             ccchhhhhceecccCCCceEEEEEecCCC----CceeEEEeeeeccccccchh-hhhhccCcceeEEEcCCCcEEEEecc
Confidence              1122334454433   222221 1111    11111222111111000000 00112346889999999999999999


Q ss_pred             CCeEEEEECCCCceeeecccccCceeceEEEEECCCCCEEEEeeCCCcEEEEECC
Q 021399          167 DAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDAR  221 (313)
Q Consensus       167 d~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~dg~i~iwd~~  221 (313)
                      ||.|.+++..+-+++.-+.  ..|...|+.+.|+||..++++.+.|.++.+..+.
T Consensus       302 dGsVai~~~~~lq~~~~vk--~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~~l~  354 (398)
T KOG0771|consen  302 DGSVAIYDAKSLQRLQYVK--EAHLGFVTGLTFSPDSRYLASVSSDNEAAVTKLA  354 (398)
T ss_pred             CCcEEEEEeceeeeeEeeh--hhheeeeeeEEEcCCcCcccccccCCceeEEEEe
Confidence            9999999998776665443  4699999999999999999999999988887654

>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]

Probab=99.77  E-value=1.6e-17  Score=131.21  Aligned_cols=220  Identities=20%  Similarity=0.284  Sum_probs=155.0

Q ss_pred             EecCCCCceEEEEECC-CCCeEEEeeCCCcEEEEECCCCeEEEEecCCCCeeEEEeecCCeEEEEECCCceeccccceee
Q 021399           47 TYRGHNGAVWCCDVSR-DSMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVK  125 (313)
Q Consensus        47 ~~~~H~~~V~~~~~~~-~~~~l~s~s~D~~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  125 (313)
                      ..+-|.+.|+++.+.+ .|++++||+.||.|-+||++....-.     .....+     ...+.                
T Consensus        38 ~~r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e-----~s~li~-----k~~c~----------------   91 (397)
T KOG4283|consen   38 FVRPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYE-----ASGLIA-----KHKCI----------------   91 (397)
T ss_pred             eeccCCCccceeeeccccceEEeecCCCccEEEEEeccccchh-----hcccee-----heeee----------------
Confidence            3456999999999986 58899999999999999987542100     000000     00000                


Q ss_pred             eeeeCCCCCCCceEEEecCCCCceEEEEEccCC-CEEEEeeCCCeEEEEECCCCceeeecccccCceeceEEEEECCC--
Q 021399          126 RIARDPADQGGESVLILKGPQGRINRAVWGPLN-RTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAAD--  202 (313)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~i~t~~~d~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~--  202 (313)
                       +...          .-.+|.-.|.++.|-|-. ..|.+++-|.++++||.++-+..-.+.    -.+.|.+-++||=  
T Consensus        92 -v~~~----------h~~~Hky~iss~~WyP~DtGmFtssSFDhtlKVWDtnTlQ~a~~F~----me~~VYshamSp~a~  156 (397)
T KOG4283|consen   92 -VAKQ----------HENGHKYAISSAIWYPIDTGMFTSSSFDHTLKVWDTNTLQEAVDFK----MEGKVYSHAMSPMAM  156 (397)
T ss_pred             -cccc----------CCccceeeeeeeEEeeecCceeecccccceEEEeecccceeeEEee----cCceeehhhcChhhh
Confidence             0000          113466678888888754 567788999999999998766544332    3456777777763  


Q ss_pred             -CCEEEEeeCCCcEEEEECCCCcEEEEEec-CCceeEEEeccCCCEEEEcccccCceeEeeccCCCceeeeeeehhhhhh
Q 021399          203 -GSHFLTGSLDKSAKLWDARTLELIKTYVT-ERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEE  280 (313)
Q Consensus       203 -~~~l~s~s~dg~i~iwd~~~~~~~~~~~~-~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  280 (313)
                       ...||+|..|-+|++-|+++|.+-.++.. ...+-++.|+|..+.++++|+-|+ .+..||.|....-.+..|....+.
T Consensus       157 sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~~vlaV~Wsp~~e~vLatgsaDg-~irlWDiRrasgcf~~lD~hn~k~  235 (397)
T KOG4283|consen  157 SHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRDGVLAVEWSPSSEWVLATGSADG-AIRLWDIRRASGCFRVLDQHNTKR  235 (397)
T ss_pred             cceEEEEecCCCcEEEEeccCCcceeeeccccCceEEEEeccCceeEEEecCCCc-eEEEEEeecccceeEEeecccCcc
Confidence             44688888999999999999999988864 456999999999999998877664 577888776543344455422121


Q ss_pred             ---hccccccccceeEEEECCCCCeeEEEEE
Q 021399          281 ---IGGVKGHFGPINALAFNPDGKRYGFLLL  308 (313)
Q Consensus       281 ---~~~~~~h~~~V~~~~fspdgk~~~~~~~  308 (313)
                         ++.-.+|.+.|+.++|+.||++++.+-.
T Consensus       236 ~p~~~~n~ah~gkvngla~tSd~~~l~~~gt  266 (397)
T KOG4283|consen  236 PPILKTNTAHYGKVNGLAWTSDARYLASCGT  266 (397)
T ss_pred             CccccccccccceeeeeeecccchhhhhccC
Confidence               2334589999999999999999887654

>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]

Probab=99.77  E-value=8.9e-18  Score=134.38  Aligned_cols=236  Identities=17%  Similarity=0.259  Sum_probs=164.2

Q ss_pred             ccccceeEEEEccC----CCEEEEeeCCCCeEEEeCCCCcEEEEecCCCCceEEEEECCCC-CeEEEeeCCCcEEEEECC
Q 021399            8 GHERPLTYLKYNKD----GDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDS-MTLITGSADQTAKLWNVE   82 (313)
Q Consensus         8 ~h~~~v~~~~fs~~----g~~l~s~s~d~~i~iw~~~~~~~~~~~~~H~~~V~~~~~~~~~-~~l~s~s~D~~v~vWd~~   82 (313)
                      .|....+.++|+-|    .++||.|+.-|.|||.|+.+++..+.+.+|.++|+.+.++|+. +++++||.|.+||+|+++
T Consensus        87 d~~Esfytcsw~yd~~~~~p~la~~G~~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~  166 (385)
T KOG1034|consen   87 DHDESFYTCSWSYDSNTGNPFLAAGGYLGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQ  166 (385)
T ss_pred             CCCcceEEEEEEecCCCCCeeEEeecceeEEEEEecchhhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEecc
Confidence            36777788888754    4689999999999999999999999999999999999999975 799999999999999999


Q ss_pred             CCeEEEEecCCCCeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEccCCCEEE
Q 021399           83 TGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTII  162 (313)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~  162 (313)
                      +..++..+.                                                 -.++|...|.++.|++++.+|+
T Consensus       167 ~~~Cv~VfG-------------------------------------------------G~egHrdeVLSvD~~~~gd~i~  197 (385)
T KOG1034|consen  167 TDVCVAVFG-------------------------------------------------GVEGHRDEVLSVDFSLDGDRIA  197 (385)
T ss_pred             CCeEEEEec-------------------------------------------------ccccccCcEEEEEEcCCCCeee
Confidence            987765431                                                 1257888999999999999999


Q ss_pred             EeeCCCeEEEEECCCCceeee-------------------------cccccCceeceEEEEECCCCCEEEEeeCCCcEEE
Q 021399          163 SAGEDAIVRIWDTETGKLLKE-------------------------SDKETGHKKTITSLAKAADGSHFLTGSLDKSAKL  217 (313)
Q Consensus       163 t~~~d~~i~lwd~~~~~~~~~-------------------------~~~~~~h~~~v~~~~~s~~~~~l~s~s~dg~i~i  217 (313)
                      ++|-|..|++|++...+....                         +....-|+..|-|+.|-  |++++|=|-++.|..
T Consensus       198 ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~--gd~ilSkscenaI~~  275 (385)
T KOG1034|consen  198 SCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWF--GDFILSKSCENAIVC  275 (385)
T ss_pred             ccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchHHHHHHH--hhheeecccCceEEE
Confidence            999999999999874321100                         00123466677777775  688999999999999


Q ss_pred             EEC-CCCcEEE---------EEe----cCC-ceeE--EEeccCCCEEEEcccccCceeEeeccCCCceeeeeeehhhhhh
Q 021399          218 WDA-RTLELIK---------TYV----TER-PVNA--VTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEE  280 (313)
Q Consensus       218 wd~-~~~~~~~---------~~~----~~~-~~~~--~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  280 (313)
                      |.. +-.+.+.         ++.    .+. .+-.  -+|.|-++.++++.  ..+-+++||.+...       ....  
T Consensus       276 w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~la~gn--q~g~v~vwdL~~~e-------p~~~--  344 (385)
T KOG1034|consen  276 WKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQKMLALGN--QSGKVYVWDLDNNE-------PPKC--  344 (385)
T ss_pred             EecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHHHHHhhcc--CCCcEEEEECCCCC-------CccC--
Confidence            987 2222211         111    111 1212  34456566555432  33334545433211       1111  


Q ss_pred             hccccc--cccceeEEEECCCCCeeEEE
Q 021399          281 IGGVKG--HFGPINALAFNPDGKRYGFL  306 (313)
Q Consensus       281 ~~~~~~--h~~~V~~~~fspdgk~~~~~  306 (313)
                       ..+..  -..+|...+||.||..+.++
T Consensus       345 -ttl~~s~~~~tVRQ~sfS~dgs~lv~v  371 (385)
T KOG1034|consen  345 -TTLTHSKSGSTVRQTSFSRDGSILVLV  371 (385)
T ss_pred             -ceEEeccccceeeeeeecccCcEEEEE
Confidence             11111  14689999999999986554

>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]

Probab=99.77  E-value=2.9e-17  Score=134.38  Aligned_cols=155  Identities=26%  Similarity=0.356  Sum_probs=124.0

Q ss_pred             EecCCCCceEEEEECCC-CCeEEEeeCCCcEEEEECCCCeEEEEecCCCCeeEEEeecCCeEEEEECCCceeccccceee
Q 021399           47 TYRGHNGAVWCCDVSRD-SMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVK  125 (313)
Q Consensus        47 ~~~~H~~~V~~~~~~~~-~~~l~s~s~D~~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  125 (313)
                      .+.||+++|..++|+|- .+.+||||.|-+|+||++..+.....                                    
T Consensus        76 ~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~------------------------------------  119 (472)
T KOG0303|consen   76 LVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRD------------------------------------  119 (472)
T ss_pred             CccCccccccccccCccCCceeecCCCCceEEEEECCCcccccC------------------------------------
Confidence            45799999999999985 46899999999999999876432110                                    


Q ss_pred             eeeeCCCCCCCceEEEecCCCCceEEEEEccC-CCEEEEeeCCCeEEEEECCCCceeeecccccCceeceEEEEECCCCC
Q 021399          126 RIARDPADQGGESVLILKGPQGRINRAVWGPL-NRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGS  204 (313)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~i~t~~~d~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~  204 (313)
                               -.+++..+.+|+.++..++|+|. .+.++++|.|.+|.+|++.++..+-++.    |...|.++.|+.||+
T Consensus       120 ---------ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~v~iWnv~tgeali~l~----hpd~i~S~sfn~dGs  186 (472)
T KOG0303|consen  120 ---------LTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNTVSIWNVGTGEALITLD----HPDMVYSMSFNRDGS  186 (472)
T ss_pred             ---------cccceEEEeecceeEEEEeecccchhhHhhccCCceEEEEeccCCceeeecC----CCCeEEEEEeccCCc
Confidence                     12467788999999999999987 4678999999999999999998776653    999999999999999


Q ss_pred             EEEEeeCCCcEEEEECCCCcEEEEEec-CC-ceeEEEeccCCCEEEEcc
Q 021399          205 HFLTGSLDKSAKLWDARTLELIKTYVT-ER-PVNAVTMSPLLDHVVLGG  251 (313)
Q Consensus       205 ~l~s~s~dg~i~iwd~~~~~~~~~~~~-~~-~~~~~~~~p~~~~~~~~~  251 (313)
                      .|++.+.|.+||+||.++++.+.+-.. ++ ....+.|-.++. ++++|
T Consensus       187 ~l~TtckDKkvRv~dpr~~~~v~e~~~heG~k~~Raifl~~g~-i~tTG  234 (472)
T KOG0303|consen  187 LLCTTCKDKKVRVIDPRRGTVVSEGVAHEGAKPARAIFLASGK-IFTTG  234 (472)
T ss_pred             eeeeecccceeEEEcCCCCcEeeecccccCCCcceeEEeccCc-eeeec
Confidence            999999999999999999999887632 21 223344545555 44443

>KOG0270 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.77  E-value=2.6e-17  Score=136.49  Aligned_cols=179  Identities=20%  Similarity=0.282  Sum_probs=136.4

Q ss_pred             CCEEEEeeCCCCeEEEeCCCCc---EEEE------------------ecCCCCceEEEEECCCC-CeEEEeeCCCcEEEE
Q 021399           22 GDLLFSCAKDHTPTVWFADNGE---RLGT------------------YRGHNGAVWCCDVSRDS-MTLITGSADQTAKLW   79 (313)
Q Consensus        22 g~~l~s~s~d~~i~iw~~~~~~---~~~~------------------~~~H~~~V~~~~~~~~~-~~l~s~s~D~~v~vW   79 (313)
                      |+++|.|.-|..|-|||++=..   +.-+                  -.+|+.+|.+++|+..- +.|+|||.|.+|++|
T Consensus       192 gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~lW  271 (463)
T KOG0270|consen  192 GNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADKTVKLW  271 (463)
T ss_pred             cceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCCceEEEE
Confidence            7899999999999999876211   1111                  23799999999998653 589999999999999


Q ss_pred             ECCCCeEEEEecCCCCeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEccCC-
Q 021399           80 NVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLN-  158 (313)
Q Consensus        80 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-  158 (313)
                      |+.++++..++.                                                    .|..+|.++.|+|.. 
T Consensus       272 D~~~g~p~~s~~----------------------------------------------------~~~k~Vq~l~wh~~~p  299 (463)
T KOG0270|consen  272 DVDTGKPKSSIT----------------------------------------------------HHGKKVQTLEWHPYEP  299 (463)
T ss_pred             EcCCCCcceehh----------------------------------------------------hcCCceeEEEecCCCc
Confidence            999987654332                                                    345567777887654 


Q ss_pred             CEEEEeeCCCeEEEEECCCCceeeecccccCceeceEEEEECCCCC-EEEEeeCCCcEEEEECCCC-cEEEEEe-cCCce
Q 021399          159 RTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGS-HFLTGSLDKSAKLWDARTL-ELIKTYV-TERPV  235 (313)
Q Consensus       159 ~~i~t~~~d~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~-~l~s~s~dg~i~iwd~~~~-~~~~~~~-~~~~~  235 (313)
                      ..+++|+.|+++.+.|.+........   -...+.|-.++|.+... .++++..||+++-+|+|.. +++.++. +..+|
T Consensus       300 ~~LLsGs~D~~V~l~D~R~~~~s~~~---wk~~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~~~~vwt~~AHd~~I  376 (463)
T KOG0270|consen  300 SVLLSGSYDGTVALKDCRDPSNSGKE---WKFDGEVEKVAWDPHSENSFFVSTDDGTVYYFDIRNPGKPVWTLKAHDDEI  376 (463)
T ss_pred             eEEEeccccceEEeeeccCccccCce---EEeccceEEEEecCCCceeEEEecCCceEEeeecCCCCCceeEEEeccCCc
Confidence            57899999999999998852221111   11356788999988654 5777889999999999984 8888886 67789


Q ss_pred             eEEEeccCCCEEEEcccccC
Q 021399          236 NAVTMSPLLDHVVLGGGQDA  255 (313)
Q Consensus       236 ~~~~~~p~~~~~~~~~~~~~  255 (313)
                      .++++++.-..++++++.+.
T Consensus       377 Sgl~~n~~~p~~l~t~s~d~  396 (463)
T KOG0270|consen  377 SGLSVNIQTPGLLSTASTDK  396 (463)
T ss_pred             ceEEecCCCCcceeeccccc
Confidence            99999999888888766553

>COG2319 FOG: WD40 repeat [General function prediction only]

Probab=99.77  E-value=1.3e-14  Score=127.54  Aligned_cols=268  Identities=31%  Similarity=0.524  Sum_probs=189.2

Q ss_pred             cccccccceeEEEEccCCCEEEEeeCCCCeEEEeCCCCc-EEEEecCCCC-ceEEEEE-CCCCC-eEEEeeC-CCcEEEE
Q 021399            5 LMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGE-RLGTYRGHNG-AVWCCDV-SRDSM-TLITGSA-DQTAKLW   79 (313)
Q Consensus         5 ~l~~h~~~v~~~~fs~~g~~l~s~s~d~~i~iw~~~~~~-~~~~~~~H~~-~V~~~~~-~~~~~-~l~s~s~-D~~v~vW   79 (313)
                      .+.+|...+.++.|.+.+..++.++.|+.+.+|+...+. ....+.++.. .+..+.+ ++++. .++..+. |+.+++|
T Consensus        60 ~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~  139 (466)
T COG2319          60 LLRGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPDGNSILLASSSLDGTVKLW  139 (466)
T ss_pred             eeeeccceEEEEEECCCCcEEEEecCCCcEEEEEcCCCceeEEEEeccCCCceeeEEEECCCcceEEeccCCCCccEEEE
Confidence            467899999999999999999999999999999998887 7777777544 7777777 77777 5555455 9999999


Q ss_pred             ECCC-CeEEEEe-cCCCCeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEccC
Q 021399           80 NVET-GAQLFTF-NFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPL  157 (313)
Q Consensus        80 d~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~  157 (313)
                      ++.. ....... .+...+..+.+.++....+....    .......+++..      ...+..+.+|...+..+.|+|.
T Consensus       140 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~------~~~~~~~~~~~~~v~~~~~~~~  209 (466)
T COG2319         140 DLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSS----LDGTIKLWDLRT------GKPLSTLAGHTDPVSSLAFSPD  209 (466)
T ss_pred             EecCCCeEEEEEecCcccEEEEEECCCCCEEEecCC----CCCceEEEEcCC------CceEEeeccCCCceEEEEEcCC
Confidence            9987 4444333 34556667888887764433321    122233333221      3456666778899999999999


Q ss_pred             CC-EEEEeeCCCeEEEEECCCCceeeecccccCceeceEEEEECCCCCEEEEeeCCCcEEEEECCCCcE-EEEE-ecCCc
Q 021399          158 NR-TIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLEL-IKTY-VTERP  234 (313)
Q Consensus       158 ~~-~i~t~~~d~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~-~~~~-~~~~~  234 (313)
                      +. .+++++.|+.|++||...+..+..  ...+|.... ...|++++..+++++.|+.+++||++.... +..+ .+...
T Consensus       210 ~~~~~~~~~~d~~i~~wd~~~~~~~~~--~~~~~~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~  286 (466)
T COG2319         210 GGLLIASGSSDGTIRLWDLSTGKLLRS--TLSGHSDSV-VSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSS  286 (466)
T ss_pred             cceEEEEecCCCcEEEEECCCCcEEee--ecCCCCcce-eEeECCCCCEEEEecCCCcEEEeeecCCCcEEEEEecCCcc
Confidence            87 566669999999999886666552  123465554 338999998999999999999999987664 4444 34567


Q ss_pred             eeEEEeccCCCEEEEcccccCceeEeeccCCCceeeeeeehhhhhhhccccccccceeEEEEC
Q 021399          235 VNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFN  297 (313)
Q Consensus       235 ~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~fs  297 (313)
                      +.++.|+|.+..+++ ++.+ ..+..|+.+.........          ...|...|..+.|+
T Consensus       287 v~~~~~~~~~~~~~~-~~~d-~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~  337 (466)
T COG2319         287 VLSVAFSPDGKLLAS-GSSD-GTVRLWDLETGKLLSSLT----------LKGHEGPVSSLSFS  337 (466)
T ss_pred             EEEEEECCCCCEEEE-eeCC-CcEEEEEcCCCceEEEee----------ecccCCceEEEEEC
Confidence            899999998777777 5555 335555544332211111          23677788999984

>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]

Probab=99.76  E-value=3.1e-17  Score=127.69  Aligned_cols=278  Identities=20%  Similarity=0.224  Sum_probs=179.9

Q ss_pred             cccccccceeEEEEccCCCEEEEeeCCCCeEEEeCCCCcEEEEec-CCCCceEEEEECCCCCeEEEeeCCCcEEEEECCC
Q 021399            5 LMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYR-GHNGAVWCCDVSRDSMTLITGSADQTAKLWNVET   83 (313)
Q Consensus         5 ~l~~h~~~v~~~~fs~~g~~l~s~s~d~~i~iw~~~~~~~~~~~~-~H~~~V~~~~~~~~~~~l~s~s~D~~v~vWd~~~   83 (313)
                      +|++|...|+++.|..++. |++|..-|.|++|++.+.+..-.++ .|...|+.+..-|+ ..+.|-++|.++.+|++..
T Consensus         9 vLRp~~~~v~s~~fqa~~r-L~sg~~~G~V~~w~lqt~r~~~~~r~~g~~~it~lq~~p~-d~l~tqgRd~~L~lw~ia~   86 (323)
T KOG0322|consen    9 VLRPHSSSVTSVLFQANER-LMSGLSVGIVKMWVLQTERDLPLIRLFGRLFITNLQSIPN-DSLDTQGRDPLLILWTIAY   86 (323)
T ss_pred             Eeccccchheehhhccchh-hhcccccceEEEEEeecCccchhhhhhccceeeceeecCC-cchhhcCCCceEEEEEccC
Confidence            7899999999999998764 8999999999999999999888888 57788888887776 5688999999999999987


Q ss_pred             CeEEEEecCCCCeeEEEeec-----CCeEE----EEECCCceeccccceeeeeeeCCCCCC-CceEEEec----CCCCce
Q 021399           84 GAQLFTFNFDSPARSVDFAV-----GDKLA----VITTDPFMELNSAIHVKRIARDPADQG-GESVLILK----GPQGRI  149 (313)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~-----~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~----~~~~~i  149 (313)
                      +..+..-.  -...++.|++     +.+..    .........    .+.       .+.. ...+....    +-.+.+
T Consensus        87 s~~i~i~S--i~~nslgFCrfSl~~~~k~~eqll~yp~rgsde----~h~-------~D~g~~tqv~i~dd~~~~Klgsv  153 (323)
T KOG0322|consen   87 SAFISIHS--IVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDE----THK-------QDGGDTTQVQIADDSERSKLGSV  153 (323)
T ss_pred             cceEEEee--eeccccccccceeccCCCcchhheecCCcccch----hhh-------hccCccceeEccCchhccccCce
Confidence            55432221  1122222221     11111    000000000    000       0000 00111111    111223


Q ss_pred             EEEEEcc-CC--CEEEEeeCCCeEEEEECCCCceeeec-------ccccCceeceEEEEECCCCCEEEEeeCCCcEEEEE
Q 021399          150 NRAVWGP-LN--RTIISAGEDAIVRIWDTETGKLLKES-------DKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWD  219 (313)
Q Consensus       150 ~~~~~~~-~~--~~i~t~~~d~~i~lwd~~~~~~~~~~-------~~~~~h~~~v~~~~~s~~~~~l~s~s~dg~i~iwd  219 (313)
                      .+..+.- .+  -.++.|-++|.+.+||+.++..+..+       .....|.+.|+++.+.+.-+.=++|+.+..+..|+
T Consensus       154 mc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dkl~~~S  233 (323)
T KOG0322|consen  154 MCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDKLVMYS  233 (323)
T ss_pred             eeeeccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCccccceeee
Confidence            3333221 11  24567788999999999886332211       11246899999999988777778999999999998


Q ss_pred             CCCC--cE-E-EEEec-CCceeEEEeccCCCEEEEcccccCceeEeeccCCCceeeeeeehhhhhhhccccccccceeEE
Q 021399          220 ARTL--EL-I-KTYVT-ERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINAL  294 (313)
Q Consensus       220 ~~~~--~~-~-~~~~~-~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~  294 (313)
                      ++..  .+ + .++.. ..-+..+...|++..++++|         ||+|     +|+|...+..++..++-|++.|+++
T Consensus       234 l~~s~gslq~~~e~~lknpGv~gvrIRpD~KIlATAG---------WD~R-----iRVyswrtl~pLAVLkyHsagvn~v  299 (323)
T KOG0322|consen  234 LNHSTGSLQIRKEITLKNPGVSGVRIRPDGKILATAG---------WDHR-----IRVYSWRTLNPLAVLKYHSAGVNAV  299 (323)
T ss_pred             eccccCcccccceEEecCCCccceEEccCCcEEeecc---------cCCc-----EEEEEeccCCchhhhhhhhcceeEE
Confidence            7642  22 1 11111 23477888999998877765         5554     5666667788899999999999999


Q ss_pred             EECCCCCee--EEEEEEEe
Q 021399          295 AFNPDGKRY--GFLLLQIN  311 (313)
Q Consensus       295 ~fspdgk~~--~~~~~~~~  311 (313)
                      ||+||...+  |.++.+|-
T Consensus       300 Afspd~~lmAaaskD~rIS  318 (323)
T KOG0322|consen  300 AFSPDCELMAAASKDARIS  318 (323)
T ss_pred             EeCCCCchhhhccCCceEE
Confidence            999996663  44555553

>KOG4227 consensus WD40 repeat protein [General function prediction only]

Probab=99.76  E-value=2.5e-16  Score=129.08  Aligned_cols=287  Identities=15%  Similarity=0.169  Sum_probs=184.3

Q ss_pred             cccccccceeEEEEccCCCEEEEeeCCCCeEEEeCCC------CcEEEEecC-CCCceEEEEECCCCCeEEEeeCCCcEE
Q 021399            5 LMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADN------GERLGTYRG-HNGAVWCCDVSRDSMTLITGSADQTAK   77 (313)
Q Consensus         5 ~l~~h~~~v~~~~fs~~g~~l~s~s~d~~i~iw~~~~------~~~~~~~~~-H~~~V~~~~~~~~~~~l~s~s~D~~v~   77 (313)
                      .+.+|.+-|.++.||.++++|++|+.|..+++|+.+.      .+++..... |...|+|++|+..++.+++|+.+++|.
T Consensus        51 D~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~VI  130 (609)
T KOG4227|consen   51 DVREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGTVI  130 (609)
T ss_pred             hhhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCCcceeE
Confidence            5789999999999999999999999999999998763      344544443 558999999999999999999999999


Q ss_pred             EEECCCCeEEEEecCCC---CeeEEEeecCC-eEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEE
Q 021399           78 LWNVETGAQLFTFNFDS---PARSVDFAVGD-KLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAV  153 (313)
Q Consensus        78 vWd~~~~~~~~~~~~~~---~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~  153 (313)
                      .-|+++.+.+..++...   .+..+..+|-+ .+++++.++...      .+++.. . ...+.+++. .......+++.
T Consensus       131 ~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~------~~D~Rd-~-~~~~~~~~~-AN~~~~F~t~~  201 (609)
T KOG4227|consen  131 KHDIETKQSIYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVS------FIDNRD-R-QNPISLVLP-ANSGKNFYTAE  201 (609)
T ss_pred             eeecccceeeeeecccCcccceeecccCCCCceEEEEecCceEE------EEeccC-C-CCCCceeee-cCCCccceeee
Confidence            99999999888876543   66667777744 444433333222      122111 0 011223322 22234567888


Q ss_pred             EccCCC-EEEEeeCCCeEEEEECCCCce--eee--cccccCceeceEEEEECCCCCEEEEeeCCCcEEEEECCCCcEE-E
Q 021399          154 WGPLNR-TIISAGEDAIVRIWDTETGKL--LKE--SDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELI-K  227 (313)
Q Consensus       154 ~~~~~~-~i~t~~~d~~i~lwd~~~~~~--~~~--~~~~~~h~~~v~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~-~  227 (313)
                      |+|... .|++.+..+-+-+||.+....  ++.  ........-.-+.+.|+|+|+.+++--.-..=.+||+.++.|. .
T Consensus       202 F~P~~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~~P~~~D~~S~R~~V~  281 (609)
T KOG4227|consen  202 FHPETPALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRRGKCPLYFDFISQRCFVL  281 (609)
T ss_pred             ecCCCceeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhhccCCCEEeeeecccceeE
Confidence            998764 567888889999999865431  111  1111111223477889999999988776666678898886553 3


Q ss_pred             EEecCC-------ceeEEEeccCCCEEEEcccccCceeEeeccC----CCceeeeeee-------hhhhhhhcccccccc
Q 021399          228 TYVTER-------PVNAVTMSPLLDHVVLGGGQDASAVTTTDHR----AGKFEAKFFD-------KILQEEIGGVKGHFG  289 (313)
Q Consensus       228 ~~~~~~-------~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~-------~~~~~~~~~~~~h~~  289 (313)
                      ++.+..       .+.+++|--+  +-+++ |+|...+++|...    .+.|...=-|       +-..+.+..++||.+
T Consensus       282 k~D~N~~GY~N~~T~KS~~F~~D--~~v~t-GSD~~~i~~WklP~~~ds~G~~~IG~~~~~~~~~~~i~~~~~VLrGHRS  358 (609)
T KOG4227|consen  282 KSDHNPNGYCNIKTIKSMTFIDD--YTVAT-GSDHWGIHIWKLPRANDSYGFTQIGHDEEEMPSEIFIEKELTVLRGHRS  358 (609)
T ss_pred             eccCCCCcceeeeeeeeeeeecc--eeeec-cCcccceEEEecCCCccccCccccCcchhhCchhheecceeEEEecccc
Confidence            332211       2445555443  33444 4455556666421    1111100000       011344567899999


Q ss_pred             ceeEEEECCCCCee
Q 021399          290 PINALAFNPDGKRY  303 (313)
Q Consensus       290 ~V~~~~fspdgk~~  303 (313)
                      .++.+.|+|....+
T Consensus       359 v~NQVRF~~H~~~l  372 (609)
T KOG4227|consen  359 VPNQVRFSQHNNLL  372 (609)
T ss_pred             cccceeecCCcceE
Confidence            99999999986554

>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.76  E-value=2.9e-16  Score=124.74  Aligned_cols=229  Identities=16%  Similarity=0.247  Sum_probs=151.7

Q ss_pred             ccccccceeEEEEcc--CCCEEEEeeCCCCeEEEeCCCC---------cEEEEecCCCCceEEEEECCC--CCeEEEeeC
Q 021399            6 MKGHERPLTYLKYNK--DGDLLFSCAKDHTPTVWFADNG---------ERLGTYRGHNGAVWCCDVSRD--SMTLITGSA   72 (313)
Q Consensus         6 l~~h~~~v~~~~fs~--~g~~l~s~s~d~~i~iw~~~~~---------~~~~~~~~H~~~V~~~~~~~~--~~~l~s~s~   72 (313)
                      .+.|.++|..+.|.+  -|+.+|++|.|++++||.-...         ....++..-+..|+.+.|.|.  |-.+++++.
T Consensus        55 Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~a  134 (361)
T KOG2445|consen   55 WRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASA  134 (361)
T ss_pred             EEecCCcEEEEEecCccccceEEEEecCCceeeeeecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEecc
Confidence            467999999999953  3899999999999999964211         124567778889999999985  568999999


Q ss_pred             CCcEEEEECCCCeEEEE------ec--------CCCCeeEEEeecC---CeEEEEECCCceeccccceeeeeeeCCCCCC
Q 021399           73 DQTAKLWNVETGAQLFT------FN--------FDSPARSVDFAVG---DKLAVITTDPFMELNSAIHVKRIARDPADQG  135 (313)
Q Consensus        73 D~~v~vWd~~~~~~~~~------~~--------~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  135 (313)
                      ||++|||+.-+.-.+..      +.        ...+..++.|.+.   ...+++..+.-..-.....++.  +......
T Consensus       135 DG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye--~~e~~rK  212 (361)
T KOG2445|consen  135 DGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYE--YNENGRK  212 (361)
T ss_pred             CcEEEEEecCCccccccchhhhhhhhccCCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEE--ecCCcce
Confidence            99999998755322211      11        2234557777753   2333333332000000011111  1100001


Q ss_pred             CceEEEecCCCCceEEEEEccCC----CEEEEeeCCCeEEEEECCCCc-----------------eeeecccccCceece
Q 021399          136 GESVLILKGPQGRINRAVWGPLN----RTIISAGEDAIVRIWDTETGK-----------------LLKESDKETGHKKTI  194 (313)
Q Consensus       136 ~~~~~~~~~~~~~i~~~~~~~~~----~~i~t~~~d~~i~lwd~~~~~-----------------~~~~~~~~~~h~~~v  194 (313)
                      -..+..+.+|..+|+.++|.|.-    ..+|+++.|| |+||.++...                 .+..+.....|+..|
T Consensus       213 w~kva~L~d~~dpI~di~wAPn~Gr~y~~lAvA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~V  291 (361)
T KOG2445|consen  213 WLKVAELPDHTDPIRDISWAPNIGRSYHLLAVATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEV  291 (361)
T ss_pred             eeeehhcCCCCCcceeeeeccccCCceeeEEEeecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCce
Confidence            12344566899999999999873    4689999999 9999976311                 122333456799999


Q ss_pred             EEEEECCCCCEEEEeeCCCcEEEEECC---CCcEEEEEecCCceeE
Q 021399          195 TSLAKAADGSHFLTGSLDKSAKLWDAR---TLELIKTYVTERPVNA  237 (313)
Q Consensus       195 ~~~~~s~~~~~l~s~s~dg~i~iwd~~---~~~~~~~~~~~~~~~~  237 (313)
                      ..+.|.-.|..|+|.+.||.||+|...   ..+|...+..+..+..
T Consensus       292 Wrv~wNmtGtiLsStGdDG~VRLWkany~n~~kC~sv~~~e~~~~~  337 (361)
T KOG2445|consen  292 WRVRWNMTGTILSSTGDDGCVRLWKANYNNLWKCTSVLKAEGSVTK  337 (361)
T ss_pred             EEEEEeeeeeEEeecCCCceeeehhhhhhhhheeeeEEeccCCCCC
Confidence            999999999999999999999999643   2345555554444333

>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]

Probab=99.76  E-value=5.9e-17  Score=129.53  Aligned_cols=222  Identities=17%  Similarity=0.326  Sum_probs=151.1

Q ss_pred             ccCCCEEEEeeCCCCeEEEeCCCCcEEEEecC--CCCce---EEEEECCCCCeEEEeeCCCcEEEEECCC-CeE--EE-E
Q 021399           19 NKDGDLLFSCAKDHTPTVWFADNGERLGTYRG--HNGAV---WCCDVSRDSMTLITGSADQTAKLWNVET-GAQ--LF-T   89 (313)
Q Consensus        19 s~~g~~l~s~s~d~~i~iw~~~~~~~~~~~~~--H~~~V---~~~~~~~~~~~l~s~s~D~~v~vWd~~~-~~~--~~-~   89 (313)
                      .|+-.++++.+.|.-|++||.-+|+....+++  |..++   .+++|+|||+.|+. |....|+++|+.. |.-  +. +
T Consensus       120 qP~t~l~a~ssr~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfa-GykrcirvFdt~RpGr~c~vy~t  198 (406)
T KOG2919|consen  120 QPSTNLFAVSSRDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFA-GYKRCIRVFDTSRPGRDCPVYTT  198 (406)
T ss_pred             CCccceeeeccccCceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEee-cccceEEEeeccCCCCCCcchhh
Confidence            47788999999999999999999998888876  55544   68999999998775 6788999999943 321  10 1


Q ss_pred             ec-----CCCCeeEEEeecCCe-EEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEccCCCEEEE
Q 021399           90 FN-----FDSPARSVDFAVGDK-LAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIIS  163 (313)
Q Consensus        90 ~~-----~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~t  163 (313)
                      +.     ...-+.+++|+|-+. ..++.+        ..+...+-.   .....++..+-+|.+.|+.++|.++|+.+.+
T Consensus       199 ~~~~k~gq~giisc~a~sP~~~~~~a~gs--------Y~q~~giy~---~~~~~pl~llggh~gGvThL~~~edGn~lfs  267 (406)
T KOG2919|consen  199 VTKGKFGQKGIISCFAFSPMDSKTLAVGS--------YGQRVGIYN---DDGRRPLQLLGGHGGGVTHLQWCEDGNKLFS  267 (406)
T ss_pred             hhcccccccceeeeeeccCCCCcceeeec--------ccceeeeEe---cCCCCceeeecccCCCeeeEEeccCcCeecc
Confidence            11     123345556666332 222211        111111111   1234566667799999999999999999999


Q ss_pred             eeC-CCeEEEEECCCCc-eeeecccccCceeceEEEEECCCCCEEEEeeCCCcEEEEECCC-CcEEEEE-ecCCceeEEE
Q 021399          164 AGE-DAIVRIWDTETGK-LLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDART-LELIKTY-VTERPVNAVT  239 (313)
Q Consensus       164 ~~~-d~~i~lwd~~~~~-~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~dg~i~iwd~~~-~~~~~~~-~~~~~~~~~~  239 (313)
                      |.. |.+|..||++..+ ++-.+..+.+....-.-+...|++.+|++|+.||.|++||+++ +..+..+ .....++.++
T Consensus       268 GaRk~dkIl~WDiR~~~~pv~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~gn~~sv~~~~sd~vNgvs  347 (406)
T KOG2919|consen  268 GARKDDKILCWDIRYSRDPVYALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDLGNEVSVTGNYSDTVNGVS  347 (406)
T ss_pred             cccCCCeEEEEeehhccchhhhhhhhccCccceEEEecCCCCceeeccCCCccEEEEecCCCCCccccccccccccccee
Confidence            875 6789999997543 3322222112112222345679999999999999999999998 5544444 3456799999


Q ss_pred             eccCCCEEEEccc
Q 021399          240 MSPLLDHVVLGGG  252 (313)
Q Consensus       240 ~~p~~~~~~~~~~  252 (313)
                      ++|.-..++++.|
T Consensus       348 lnP~mpilatssG  360 (406)
T KOG2919|consen  348 LNPIMPILATSSG  360 (406)
T ss_pred             cCcccceeeeccC
Confidence            9999887777655

>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]

Probab=99.76  E-value=1.9e-17  Score=140.41  Aligned_cols=203  Identities=19%  Similarity=0.260  Sum_probs=149.2

Q ss_pred             CCEEEEeeCCCCeEEEeCCCCcEEEEecCCCCceEEEEECCCCCeEEEeeCCCcEEEEECCCCeEEEEecCCCCeeEEEe
Q 021399           22 GDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDF  101 (313)
Q Consensus        22 g~~l~s~s~d~~i~iw~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~v~vWd~~~~~~~~~~~~~~~~~~~~~  101 (313)
                      .+.|+.++.||.+.|-+ +.+++.....+|.++|.+-.|+|||.-|+|+|.||.||+|+-...-.-.......++.++.|
T Consensus        75 ~d~~~i~s~DGkf~il~-k~~rVE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSrsGMLRStl~Q~~~~v~c~~W  153 (737)
T KOG1524|consen   75 SDTLLICSNDGRFVILN-KSARVERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWSRSGMLRSTVVQNEESIRCARW  153 (737)
T ss_pred             cceEEEEcCCceEEEec-ccchhhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEeccchHHHHHhhcCceeEEEEE
Confidence            45788899999988875 67778888999999999999999999999999999999998554332222345678888899


Q ss_pred             ecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEccCCCEEEEeeCCCeEEEEECCCCcee
Q 021399          102 AVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLL  181 (313)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~t~~~d~~i~lwd~~~~~~~  181 (313)
                      .|+...++.....-      +..+.+      .....+..++.|.+-|.++.|++..+.|++||+|.+.++||..- ..+
T Consensus       154 ~p~S~~vl~c~g~h------~~IKpL------~~n~k~i~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~~G-~~L  220 (737)
T KOG1524|consen  154 APNSNSIVFCQGGH------ISIKPL------AANSKIIRWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDAQG-ANL  220 (737)
T ss_pred             CCCCCceEEecCCe------EEEeec------ccccceeEEeccCcEEEEeecCccccceeecCCceeEEeecccC-ccc
Confidence            88765544432211      111111      12234567789999999999999999999999999999999764 332


Q ss_pred             eecccccCceeceEEEEECCCCCEEEEeeCCCcEEEEECCCCcEEEEEecCCceeEEEeccCCCEEEEcccc
Q 021399          182 KESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTERPVNAVTMSPLLDHVVLGGGQ  253 (313)
Q Consensus       182 ~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~  253 (313)
                         .....|...|++++|.|+ ..++.+|. +++|+=.          ...+.+..++|+|+|.++..+.+.
T Consensus       221 ---f~S~~~ey~ITSva~npd-~~~~v~S~-nt~R~~~----------p~~GSifnlsWS~DGTQ~a~gt~~  277 (737)
T KOG1524|consen  221 ---FTSAAEEYAITSVAFNPE-KDYLLWSY-NTARFSS----------PRVGSIFNLSWSADGTQATCGTST  277 (737)
T ss_pred             ---ccCChhccceeeeeeccc-cceeeeee-eeeeecC----------CCccceEEEEEcCCCceeeccccC
Confidence               223468999999999999 55666654 3444111          223568899999999987665443

>KOG0649 consensus WD40 repeat protein [General function prediction only]

Probab=99.76  E-value=1.2e-16  Score=123.15  Aligned_cols=174  Identities=17%  Similarity=0.250  Sum_probs=127.2

Q ss_pred             ceeEEEEccCCCEEEEeeCCCCeEEEeCCCC----------cEEEEecCCCCceEEEEECCCCCeEEEeeCCCcEEEEEC
Q 021399           12 PLTYLKYNKDGDLLFSCAKDHTPTVWFADNG----------ERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNV   81 (313)
Q Consensus        12 ~v~~~~fs~~g~~l~s~s~d~~i~iw~~~~~----------~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~v~vWd~   81 (313)
                      .|..-+++|-+++|+.|+.+|.|-+..++.-          ..+-.+++|+++|+.++|..  .+|++|+ ||.|+-|.-
T Consensus        12 tvf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~d--~~Lls~g-dG~V~gw~W   88 (325)
T KOG0649|consen   12 TVFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFHD--DFLLSGG-DGLVYGWEW   88 (325)
T ss_pred             HHHHHhhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeeeh--hheeecc-CceEEEeee
Confidence            3556678999999999999999999976631          12445689999999999984  3677766 599999875


Q ss_pred             CCCeEEEEecCCCCeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEccCCCEE
Q 021399           82 ETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTI  161 (313)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i  161 (313)
                      .+...-.                               ....+|++..      ...+-  ...-..|+.+...|.++.+
T Consensus        89 ~E~~es~-------------------------------~~K~lwe~~~------P~~~~--~~evPeINam~ldP~enSi  129 (325)
T KOG0649|consen   89 NEEEESL-------------------------------ATKRLWEVKI------PMQVD--AVEVPEINAMWLDPSENSI  129 (325)
T ss_pred             hhhhhhc-------------------------------cchhhhhhcC------ccccC--cccCCccceeEeccCCCcE
Confidence            4432100                               0000011000      00000  0112357788888999999


Q ss_pred             EEeeCCCeEEEEECCCCceeeecccccCceeceEEEEECCCCCEEEEeeCCCcEEEEECCCCcEEEEEe
Q 021399          162 ISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYV  230 (313)
Q Consensus       162 ~t~~~d~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~  230 (313)
                      ++++.|+.++.||+++++.-+++.   +|.+.+.++..-.....|+||+.||++|+||+++++++.++.
T Consensus       130 ~~AgGD~~~y~~dlE~G~i~r~~r---GHtDYvH~vv~R~~~~qilsG~EDGtvRvWd~kt~k~v~~ie  195 (325)
T KOG0649|consen  130 LFAGGDGVIYQVDLEDGRIQREYR---GHTDYVHSVVGRNANGQILSGAEDGTVRVWDTKTQKHVSMIE  195 (325)
T ss_pred             EEecCCeEEEEEEecCCEEEEEEc---CCcceeeeeeecccCcceeecCCCccEEEEeccccceeEEec
Confidence            999999999999999998766654   899999999885555679999999999999999999998875

>KOG4328 consensus WD40 protein [Function unknown]

Probab=99.75  E-value=7.4e-17  Score=134.27  Aligned_cols=203  Identities=18%  Similarity=0.263  Sum_probs=146.3

Q ss_pred             ccccccccceeEEEEccCC-CEEEEeeCCCCeEEEeCCCCcE--EE----------------------------------
Q 021399            4 ILMKGHERPLTYLKYNKDG-DLLFSCAKDHTPTVWFADNGER--LG----------------------------------   46 (313)
Q Consensus         4 ~~l~~h~~~v~~~~fs~~g-~~l~s~s~d~~i~iw~~~~~~~--~~----------------------------------   46 (313)
                      .++..|.++|.++.|+|.. .++++.|.||+||.-|++.+..  +.                                  
T Consensus       228 ~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDGtiR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD  307 (498)
T KOG4328|consen  228 YLFTPHSGPVSGLKFSPANTSQIYSSSYDGTIRLQDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVID  307 (498)
T ss_pred             EEeccCCccccceEecCCChhheeeeccCceeeeeeecchhhHHHhhcCccceeeeeccccCCCccEEEeecccceEEEE
Confidence            3567899999999999965 6999999999999998875321  00                                  


Q ss_pred             ---------EecCCCCceEEEEECCCC-CeEEEeeCCCcEEEEECCCCeEEEEecCCCCeeEEEeecCCeEEEEECCCce
Q 021399           47 ---------TYRGHNGAVWCCDVSRDS-MTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFM  116 (313)
Q Consensus        47 ---------~~~~H~~~V~~~~~~~~~-~~l~s~s~D~~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  116 (313)
                               .++-|+..|.+++++|.. .+++|||.|++++|||++.-...                             
T Consensus       308 ~R~~~s~~~~~~lh~kKI~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K-----------------------------  358 (498)
T KOG4328|consen  308 LRTDGSEYENLRLHKKKITSVALNPVCPWFLATASLDQTAKIWDLRQLRGK-----------------------------  358 (498)
T ss_pred             eecCCccchhhhhhhcccceeecCCCCchheeecccCcceeeeehhhhcCC-----------------------------
Confidence                     013567788999999865 47899999999999998742110                             


Q ss_pred             eccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEccCCCEEEEeeCCCeEEEEECC----CCceeeecccccCcee
Q 021399          117 ELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTE----TGKLLKESDKETGHKK  192 (313)
Q Consensus       117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~t~~~d~~i~lwd~~----~~~~~~~~~~~~~h~~  192 (313)
                                         ..+.+....|.-.|++++|+|.+..++|.+.|..|+|||..    .-.+..++.+...+..
T Consensus       359 -------------------~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss~~sa~~~p~~~I~Hn~~t~R  419 (498)
T KOG4328|consen  359 -------------------ASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSSCISAKDEPLGTIPHNNRTGR  419 (498)
T ss_pred             -------------------CCcceecccccceeeeeEEcCCCCceEeeccCCceEEeecccccccCCccceeeccCcccc
Confidence                               00122233467789999999999889999999999999973    2233344432222223


Q ss_pred             ce--EEEEECCCCCEEEEeeCCCcEEEEECCCCcEEEEEecCCc--ee-EEEeccCCCEEEEccccc
Q 021399          193 TI--TSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTERP--VN-AVTMSPLLDHVVLGGGQD  254 (313)
Q Consensus       193 ~v--~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~--~~-~~~~~p~~~~~~~~~~~~  254 (313)
                      .+  ...+|.|+.++|+.|-.-..|-++|...++.+.++..+..  |. -.+|||..+.+++++...
T Consensus       420 wlT~fKA~W~P~~~li~vg~~~r~IDv~~~~~~q~v~el~~P~~~tI~~vn~~HP~~~~~~aG~~s~  486 (498)
T KOG4328|consen  420 WLTPFKAAWDPDYNLIVVGRYPRPIDVFDGNGGQMVCELHDPESSTIPSVNEFHPMRDTLAAGGNSS  486 (498)
T ss_pred             cccchhheeCCCccEEEEeccCcceeEEcCCCCEEeeeccCccccccccceeecccccceeccCCcc
Confidence            33  3457999999999999999999999998887777654332  33 367999988766655443

>COG2319 FOG: WD40 repeat [General function prediction only]

Probab=99.75  E-value=1.6e-14  Score=126.90  Aligned_cols=275  Identities=30%  Similarity=0.472  Sum_probs=185.3

Q ss_pred             cccccccceeEEEEccCCCEEEEeeC-CCCeEEEeCCCCcEEEEecCCCCceEEEEECCCCC-eEEEeeCCCcEEEEECC
Q 021399            5 LMKGHERPLTYLKYNKDGDLLFSCAK-DHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSM-TLITGSADQTAKLWNVE   82 (313)
Q Consensus         5 ~l~~h~~~v~~~~fs~~g~~l~s~s~-d~~i~iw~~~~~~~~~~~~~H~~~V~~~~~~~~~~-~l~s~s~D~~v~vWd~~   82 (313)
                      .+.+|...|..+.|+|+++.+++++. |+.+++|+..++..+..+.+|...|.+++|+|++. .+++++.|+++++||..
T Consensus       150 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~wd~~  229 (466)
T COG2319         150 TLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLS  229 (466)
T ss_pred             EEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCceEEeeccCCCceEEEEEcCCcceEEEEecCCCcEEEEECC
Confidence            57789999999999999999999986 99999999999889999999999999999999987 66666999999999988


Q ss_pred             CCeEEE-EecCCCCeeEEEeecCCeEEE-EECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEccCCCE
Q 021399           83 TGAQLF-TFNFDSPARSVDFAVGDKLAV-ITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRT  160 (313)
Q Consensus        83 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~  160 (313)
                      .+.... .+..........|.+...... ...+.      ...+++....     ........+|...+..+.|.|.+..
T Consensus       230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~------~~~~~~~~~~-----~~~~~~~~~~~~~v~~~~~~~~~~~  298 (466)
T COG2319         230 TGKLLRSTLSGHSDSVVSSFSPDGSLLASGSSDG------TIRLWDLRSS-----SSLLRTLSGHSSSVLSVAFSPDGKL  298 (466)
T ss_pred             CCcEEeeecCCCCcceeEeECCCCCEEEEecCCC------cEEEeeecCC-----CcEEEEEecCCccEEEEEECCCCCE
Confidence            766665 333322222225666653333 22222      2222322211     1112222677888999999998888


Q ss_pred             EEEeeCCCeEEEEECCCCceeeecccccCceeceEEEEECCCCCEEEEe-eCCCcEEEEECCCCcEEEEEecCCceeEEE
Q 021399          161 IISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTG-SLDKSAKLWDARTLELIKTYVTERPVNAVT  239 (313)
Q Consensus       161 i~t~~~d~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~-s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~  239 (313)
                      +++++.|+.+++||........... ...|...+..+.+.+++..++.+ ..|+.+.+|+...............+..+.
T Consensus       299 ~~~~~~d~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~  377 (466)
T COG2319         299 LASGSSDGTVRLWDLETGKLLSSLT-LKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGKPLKTLEGHSNVLSVS  377 (466)
T ss_pred             EEEeeCCCcEEEEEcCCCceEEEee-ecccCCceEEEEECCCCCEEEEeecCCCcEEeeecCCCceeEEecCCceEEEEE
Confidence            8889989889999988766544332 23466678888884333556666 688999999998877333333333377888


Q ss_pred             eccCCCEEEEcccccCceeEeeccCCCceeeeeeehhhhhhhccccccccceeEEEECCCCCeeEE
Q 021399          240 MSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKRYGF  305 (313)
Q Consensus       240 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~fspdgk~~~~  305 (313)
                      +.+ . ....+.......+.            +|+............+...+....+++++..++-
T Consensus       378 ~~~-~-~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  429 (466)
T COG2319         378 FSP-D-GRVVSSGSTDGTVR------------LWDLSTGSLLRNLDGHTSRVTSLDFSPDGKSLAS  429 (466)
T ss_pred             ECC-C-CCEEEEecCCCceE------------EEecccCeeeeeccCCCCcEEEEEECCCCcEEEE
Confidence            888 6 44444222223333            3443333222222222278888888988887654

>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]

Probab=99.74  E-value=1.5e-16  Score=133.89  Aligned_cols=186  Identities=17%  Similarity=0.278  Sum_probs=150.1

Q ss_pred             ccccccccceeEEEEccCCCEEEEeeCCCCeEEEeCCCCcEEEEecCCCC-ceEEEEECCCCC-eEEEeeCCCcEEEEEC
Q 021399            4 ILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNG-AVWCCDVSRDSM-TLITGSADQTAKLWNV   81 (313)
Q Consensus         4 ~~l~~h~~~v~~~~fs~~g~~l~s~s~d~~i~iw~~~~~~~~~~~~~H~~-~V~~~~~~~~~~-~l~s~s~D~~v~vWd~   81 (313)
                      +-|++|..-|+++.|.-+..+|++++..|.|.|..+.++..-.+|..-.+ .|.-+.|+|..+ +|.++|.+|.|.+||+
T Consensus       115 r~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~tt~f~~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv  194 (673)
T KOG4378|consen  115 RFLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQKTTTFTIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDV  194 (673)
T ss_pred             hhccCCcceeEEEEecCCcceeEEeccCCcEEEEecccCccccceecCCCCeEEEeecccccceeeEeeccCCeEEEEec
Confidence            45899999999999999999999999999999999999887777765444 455789999876 6678899999999998


Q ss_pred             CCCeEEEEecCCCCeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEccCC-CE
Q 021399           82 ETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLN-RT  160 (313)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~  160 (313)
                      ....++..                                                   ..+.|..+...++|+|.. ..
T Consensus       195 ~g~sp~~~---------------------------------------------------~~~~HsAP~~gicfspsne~l  223 (673)
T KOG4378|consen  195 QGMSPIFH---------------------------------------------------ASEAHSAPCRGICFSPSNEAL  223 (673)
T ss_pred             cCCCcccc---------------------------------------------------hhhhccCCcCcceecCCccce
Confidence            76543211                                                   113466777788898875 46


Q ss_pred             EEEeeCCCeEEEEECCCCceeeecccccCceeceEEEEECCCCCEEEEeeCCCcEEEEECCCC-cEEEEEe-cCCceeEE
Q 021399          161 IISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTL-ELIKTYV-TERPVNAV  238 (313)
Q Consensus       161 i~t~~~d~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~dg~i~iwd~~~~-~~~~~~~-~~~~~~~~  238 (313)
                      |++.|.|++|.+||..+.....++.    .......++|+++|.+|+.|+..|.|..||++.. .++..+. +...+.++
T Consensus       224 ~vsVG~Dkki~~yD~~s~~s~~~l~----y~~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k~Pv~v~sah~~sVt~v  299 (673)
T KOG4378|consen  224 LVSVGYDKKINIYDIRSQASTDRLT----YSHPLSTVAFSECGTYLCAGNSKGELIAYDMRSTKAPVAVRSAHDASVTRV  299 (673)
T ss_pred             EEEecccceEEEeecccccccceee----ecCCcceeeecCCceEEEeecCCceEEEEecccCCCCceEeeecccceeEE
Confidence            7889999999999998776655553    3457899999999999999999999999999974 5666654 45679999


Q ss_pred             EeccCC
Q 021399          239 TMSPLL  244 (313)
Q Consensus       239 ~~~p~~  244 (313)
                      +|.|.-
T Consensus       300 afq~s~  305 (673)
T KOG4378|consen  300 AFQPSP  305 (673)
T ss_pred             Eeeecc
Confidence            998763

>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]

Probab=99.73  E-value=3.6e-16  Score=134.26  Aligned_cols=237  Identities=22%  Similarity=0.319  Sum_probs=165.7

Q ss_pred             EEecCCCCceEEEEECCCCCeEEEeeCCCcEEEEECCCCeEEEEecCCCCeeEEEeecCCeEEEE--ECC-Cceeccccc
Q 021399           46 GTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVI--TTD-PFMELNSAI  122 (313)
Q Consensus        46 ~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~-~~~~~~~~~  122 (313)
                      ..++||++.|.+++..|.|++|++||.||+|+||.+.++.++..+.+...+.++.|.|...++++  ... ....++...
T Consensus       394 lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~~d~~I~~vaw~P~~~~~vLAvA~~~~~~ivnp~~  473 (733)
T KOG0650|consen  394 LVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQFDSEIRSVAWNPLSDLCVLAVAVGECVLIVNPIF  473 (733)
T ss_pred             eeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEeecceeEEEEecCCCCceeEEEEecCceEEeCccc
Confidence            45789999999999999999999999999999999999999999999999999999986544332  221 111111111


Q ss_pred             e----e---ee-eeeC--------------CC--CCCCceEEEecCCCCceEEEEEccCCCEEEEeeC---CCeEEEEEC
Q 021399          123 H----V---KR-IARD--------------PA--DQGGESVLILKGPQGRINRAVWGPLNRTIISAGE---DAIVRIWDT  175 (313)
Q Consensus       123 ~----~---~~-~~~~--------------~~--~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~t~~~---d~~i~lwd~  175 (313)
                      .    .   .. +...              ..  +.....++..-.|...|.++.|+..|.+|++...   ...|.|.++
T Consensus       474 G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~VliHQL  553 (733)
T KOG0650|consen  474 GDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGNKSVLIHQL  553 (733)
T ss_pred             cchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCCcceEEEEec
Confidence            1    0   00 0000              00  0001113344457788999999999999998754   346888887


Q ss_pred             CCCceeeecccccCceeceEEEEECCCCCEEEEeeCCCcEEEEECCCCcEEEEEec-CCceeEEEeccCCCEEEEccccc
Q 021399          176 ETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVT-ERPVNAVTMSPLLDHVVLGGGQD  254 (313)
Q Consensus       176 ~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~-~~~~~~~~~~p~~~~~~~~~~~~  254 (313)
                      ........+.   -..+.+.++.|+|...+++.++. ..|++||+-.++.++++.. ..-+..++.+|.|+.+++++ .+
T Consensus       554 SK~~sQ~PF~---kskG~vq~v~FHPs~p~lfVaTq-~~vRiYdL~kqelvKkL~tg~kwiS~msihp~GDnli~gs-~d  628 (733)
T KOG0650|consen  554 SKRKSQSPFR---KSKGLVQRVKFHPSKPYLFVATQ-RSVRIYDLSKQELVKKLLTGSKWISSMSIHPNGDNLILGS-YD  628 (733)
T ss_pred             ccccccCchh---hcCCceeEEEecCCCceEEEEec-cceEEEehhHHHHHHHHhcCCeeeeeeeecCCCCeEEEec-CC
Confidence            6554333332   23567999999999999888886 5699999998877776643 34478899999999988754 33


Q ss_pred             CceeEeeccCCCceeeeeeehhhhhhhccccccccceeEEEECCC
Q 021399          255 ASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPD  299 (313)
Q Consensus       255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~fspd  299 (313)
                      . -+.++|..           .+.++.+.+..|..+|.+++|++-
T Consensus       629 ~-k~~WfDld-----------lsskPyk~lr~H~~avr~Va~H~r  661 (733)
T KOG0650|consen  629 K-KMCWFDLD-----------LSSKPYKTLRLHEKAVRSVAFHKR  661 (733)
T ss_pred             C-eeEEEEcc-----------cCcchhHHhhhhhhhhhhhhhccc
Confidence            2 23333321           234556778889999999999864

>PRK01742 tolB translocation protein TolB; Provisional

Probab=99.73  E-value=6.6e-16  Score=136.98  Aligned_cols=221  Identities=17%  Similarity=0.188  Sum_probs=145.1

Q ss_pred             cccccccccceeEEEEccCCCEEEEeeCC---CCeEEEeCCCCcE--EEEecCCCCceEEEEECCCCCeEEEe-eCCCcE
Q 021399            3 PILMKGHERPLTYLKYNKDGDLLFSCAKD---HTPTVWFADNGER--LGTYRGHNGAVWCCDVSRDSMTLITG-SADQTA   76 (313)
Q Consensus         3 ~~~l~~h~~~v~~~~fs~~g~~l~s~s~d---~~i~iw~~~~~~~--~~~~~~H~~~V~~~~~~~~~~~l~s~-s~D~~v   76 (313)
                      ++.+..|...+...+|||||++|+.++.+   ..|++||+.+++.  +..+.+|.   ..++|+|||+.++.+ +.+|.+
T Consensus       196 ~~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g~~---~~~~wSPDG~~La~~~~~~g~~  272 (429)
T PRK01742        196 QFIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASFRGHN---GAPAFSPDGSRLAFASSKDGVL  272 (429)
T ss_pred             ceEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecCCCcc---CceeECCCCCEEEEEEecCCcE
Confidence            55677888889999999999999988754   3699999988753  44445544   467999999977765 468877


Q ss_pred             EEEE--CCCCeEEEEecCCCCeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEE
Q 021399           77 KLWN--VETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVW  154 (313)
Q Consensus        77 ~vWd--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~  154 (313)
                      .||.  +.+++...                                                     +..+...+....|
T Consensus       273 ~Iy~~d~~~~~~~~-----------------------------------------------------lt~~~~~~~~~~w  299 (429)
T PRK01742        273 NIYVMGANGGTPSQ-----------------------------------------------------LTSGAGNNTEPSW  299 (429)
T ss_pred             EEEEEECCCCCeEe-----------------------------------------------------eccCCCCcCCEEE
Confidence            7664  43332110                                                     1112233456789


Q ss_pred             ccCCCEEEEee-CCCeEEEEECCCC-ceeeecccccCceeceEEEEECCCCCEEEEeeCCCcEEEEECCCCcEEEEEecC
Q 021399          155 GPLNRTIISAG-EDAIVRIWDTETG-KLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTE  232 (313)
Q Consensus       155 ~~~~~~i~t~~-~d~~i~lwd~~~~-~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~  232 (313)
                      +|+++.|+.++ .++..+||++... .....+    .+..  ...+|+|||+.|+..+.++ +.+||+++++... +...
T Consensus       300 SpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l----~~~~--~~~~~SpDG~~ia~~~~~~-i~~~Dl~~g~~~~-lt~~  371 (429)
T PRK01742        300 SPDGQSILFTSDRSGSPQVYRMSASGGGASLV----GGRG--YSAQISADGKTLVMINGDN-VVKQDLTSGSTEV-LSST  371 (429)
T ss_pred             CCCCCEEEEEECCCCCceEEEEECCCCCeEEe----cCCC--CCccCCCCCCEEEEEcCCC-EEEEECCCCCeEE-ecCC
Confidence            99999877554 5677888876432 222222    1222  3568999999998888765 5569999887543 2222


Q ss_pred             CceeEEEeccCCCEEEEcccccCceeEeeccCCCceeeeeeehhhhhhhccccccccceeEEEECCC
Q 021399          233 RPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPD  299 (313)
Q Consensus       233 ~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~fspd  299 (313)
                      .....++|+|++..++.+.......           .+..++ ..++.+..+.+|.+.+...+|||-
T Consensus       372 ~~~~~~~~sPdG~~i~~~s~~g~~~-----------~l~~~~-~~G~~~~~l~~~~g~~~~p~wsp~  426 (429)
T PRK01742        372 FLDESPSISPNGIMIIYSSTQGLGK-----------VLQLVS-ADGRFKARLPGSDGQVKFPAWSPY  426 (429)
T ss_pred             CCCCCceECCCCCEEEEEEcCCCce-----------EEEEEE-CCCCceEEccCCCCCCCCcccCCC
Confidence            2345678999999888765432211           111222 234455566788889999999984

>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]

Probab=99.72  E-value=1.1e-15  Score=120.60  Aligned_cols=252  Identities=17%  Similarity=0.270  Sum_probs=165.3

Q ss_pred             cccccccceeEEEEccCCCEEEE-eeCC-------CCeEEEeCCCC---------cEEEEec-CCCCceEEEEECCCCCe
Q 021399            5 LMKGHERPLTYLKYNKDGDLLFS-CAKD-------HTPTVWFADNG---------ERLGTYR-GHNGAVWCCDVSRDSMT   66 (313)
Q Consensus         5 ~l~~h~~~v~~~~fs~~g~~l~s-~s~d-------~~i~iw~~~~~---------~~~~~~~-~H~~~V~~~~~~~~~~~   66 (313)
                      +|..|.+.|+.++-+|-.+.|++ +-.|       ..+.||.....         +++..+. .|-+.|.|+.|.|++..
T Consensus        58 vf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~Ldteavg~i~cvew~Pns~k  137 (370)
T KOG1007|consen   58 VFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVASLDTEAVGKINCVEWEPNSDK  137 (370)
T ss_pred             hhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhcCCHHHhCceeeEEEcCCCCe
Confidence            57788999999999997665554 4332       34678976532         2233444 46678999999999988


Q ss_pred             EEEeeCCCcEEEEECCCCeEE-EEecCCCCeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCC
Q 021399           67 LITGSADQTAKLWNVETGAQL-FTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGP  145 (313)
Q Consensus        67 l~s~s~D~~v~vWd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  145 (313)
                      +++-. |..|.+|++.++..+ .....                    .                    .+       ..+
T Consensus       138 lasm~-dn~i~l~~l~ess~~vaev~s--------------------s--------------------~s-------~e~  169 (370)
T KOG1007|consen  138 LASMD-DNNIVLWSLDESSKIVAEVLS--------------------S--------------------ES-------AEM  169 (370)
T ss_pred             eEEec-cCceEEEEcccCcchheeecc--------------------c--------------------cc-------ccc
Confidence            87644 899999999876432 10000                    0                    00       002


Q ss_pred             CCceEEEEEcc--CCCEEEEeeCCCeEEEEECCCCceeeecccccCceeceEEEEECCCCC-EEEEeeCCCcEEEEECCC
Q 021399          146 QGRINRAVWGP--LNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGS-HFLTGSLDKSAKLWDART  222 (313)
Q Consensus       146 ~~~i~~~~~~~--~~~~i~t~~~d~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~-~l~s~s~dg~i~iwd~~~  222 (313)
                      .....+-.|+|  +++.+++.+ |+++..||+++.+..-.+.  ..|...|+.+.|.|+.. +|+||+.||.|++||.|.
T Consensus       170 ~~~ftsg~WspHHdgnqv~tt~-d~tl~~~D~RT~~~~~sI~--dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~  246 (370)
T KOG1007|consen  170 RHSFTSGAWSPHHDGNQVATTS-DSTLQFWDLRTMKKNNSIE--DAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRK  246 (370)
T ss_pred             cceecccccCCCCccceEEEeC-CCcEEEEEccchhhhcchh--hhhcceeeeccCCCCceEEEEEcCCCccEEEEeccC
Confidence            22344556777  466666655 7899999999876554443  46889999999999866 588999999999999986


Q ss_pred             -CcEEEEEecC-CceeEEEeccCCCEEEEcccccCceeEeeccCCC-ceee-------eeeehhhhh--------hhccc
Q 021399          223 -LELIKTYVTE-RPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAG-KFEA-------KFFDKILQE--------EIGGV  284 (313)
Q Consensus       223 -~~~~~~~~~~-~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-------~~~~~~~~~--------~~~~~  284 (313)
                       ..++.++... .=+-+|-|+|..++++.+||+|...+...-...- .-.+       ..-+....+        .+..+
T Consensus       247 tk~pv~el~~HsHWvW~VRfn~~hdqLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~ty  326 (370)
T KOG1007|consen  247 TKFPVQELPGHSHWVWAVRFNPEHDQLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETY  326 (370)
T ss_pred             CCccccccCCCceEEEEEEecCccceEEEecCCCceeEEEeccccccccccccccccccCcchhhHHhcccccccccccc
Confidence             4566666533 3467889999999999999988765432221110 0000       011111111        23356


Q ss_pred             cccccceeEEEECCC-CCeeEEEE
Q 021399          285 KGHFGPINALAFNPD-GKRYGFLL  307 (313)
Q Consensus       285 ~~h~~~V~~~~fspd-gk~~~~~~  307 (313)
                      ..|..-|++++||.- .=+||.|-
T Consensus       327 dehEDSVY~~aWSsadPWiFASLS  350 (370)
T KOG1007|consen  327 DEHEDSVYALAWSSADPWIFASLS  350 (370)
T ss_pred             cccccceEEEeeccCCCeeEEEec
Confidence            679999999999764 44577664

>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]

Probab=99.72  E-value=3.7e-16  Score=135.08  Aligned_cols=196  Identities=17%  Similarity=0.201  Sum_probs=137.0

Q ss_pred             EEEEccC---CCEEEEeeCCCCeEEEeCCCCc------EEEEecCCCCceEEEEECCCCCeEEEeeCCCcEEEEECCCCe
Q 021399           15 YLKYNKD---GDLLFSCAKDHTPTVWFADNGE------RLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGA   85 (313)
Q Consensus        15 ~~~fs~~---g~~l~s~s~d~~i~iw~~~~~~------~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~v~vWd~~~~~   85 (313)
                      .+.|++-   ...|+.+..||.|.++|.....      .++...+|.+.|+.+.|-|....|++++.|.++++||+.++.
T Consensus        54 ~~sFs~~~n~eHiLavadE~G~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~  133 (720)
T KOG0321|consen   54 ADSFSAAPNKEHILAVADEDGGIILFDTKSIVFRLEERQLKKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSR  133 (720)
T ss_pred             cccccCCCCccceEEEecCCCceeeecchhhhcchhhhhhcccccccceeEeeccCCCceeEEEccCCceeeeeeeccce
Confidence            4677643   4578889999999999876442      235567899999999999966699999999999999998765


Q ss_pred             EEEEecCCCCeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEccCC-CEEEEe
Q 021399           86 QLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLN-RTIISA  164 (313)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~i~t~  164 (313)
                      ++.                                                  .....||...+.+++|.|.. ..|++|
T Consensus       134 l~G--------------------------------------------------~~~~~GH~~SvkS~cf~~~n~~vF~tG  163 (720)
T KOG0321|consen  134 LVG--------------------------------------------------GRLNLGHTGSVKSECFMPTNPAVFCTG  163 (720)
T ss_pred             eec--------------------------------------------------ceeecccccccchhhhccCCCcceeec
Confidence            431                                                  11235678888888888765 468899


Q ss_pred             eCCCeEEEEECCCCc--eeeec----------------------ccccCceeceEE---EEECCCCCEEEEeeC-CCcEE
Q 021399          165 GEDAIVRIWDTETGK--LLKES----------------------DKETGHKKTITS---LAKAADGSHFLTGSL-DKSAK  216 (313)
Q Consensus       165 ~~d~~i~lwd~~~~~--~~~~~----------------------~~~~~h~~~v~~---~~~s~~~~~l~s~s~-dg~i~  216 (313)
                      +.||.|.|||++-..  .+.++                      .....+...|.+   +.+..|...||+++. |+.|+
T Consensus       164 gRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iK  243 (720)
T KOG0321|consen  164 GRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLFKDESTLASAGAADSTIK  243 (720)
T ss_pred             cCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhccccccccccCceeeeeEEEEEeccceeeeccCCCcceE
Confidence            999999999975432  00000                      000123344444   456678899999998 99999


Q ss_pred             EEECCCCcEEEEEec------------CCceeEEEeccCCCEEEEcccccCceeEeec
Q 021399          217 LWDARTLELIKTYVT------------ERPVNAVTMSPLLDHVVLGGGQDASAVTTTD  262 (313)
Q Consensus       217 iwd~~~~~~~~~~~~------------~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~  262 (313)
                      +||+++.........            ...+.++.....|.++++.+.+  +.|+.|+
T Consensus       244 VWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCtD--~sIy~yn  299 (720)
T KOG0321|consen  244 VWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCTD--NSIYFYN  299 (720)
T ss_pred             EEeecccccccccCCCcccCccCcccceeeeEEEEecCCCCeEEEEecC--CcEEEEe
Confidence            999998755433211            1124566667778898888763  3344444

>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]

Probab=99.72  E-value=2.5e-16  Score=129.39  Aligned_cols=100  Identities=24%  Similarity=0.423  Sum_probs=82.0

Q ss_pred             cccccccceeEEEEccCCCEEEEeeCCCCeEEEeCC--------C-----C---cEEEEecCCCCceEEEEECCCCCeEE
Q 021399            5 LMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFAD--------N-----G---ERLGTYRGHNGAVWCCDVSRDSMTLI   68 (313)
Q Consensus         5 ~l~~h~~~v~~~~fs~~g~~l~s~s~d~~i~iw~~~--------~-----~---~~~~~~~~H~~~V~~~~~~~~~~~l~   68 (313)
                      .|..|.+.|++++|+|+|+.|+||+.+|.|.+|-..        +     .   ...+.+++|...|..++|+|+++.++
T Consensus        60 ~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~  139 (434)
T KOG1009|consen   60 SLSRHTRAVNVVRFSPDGELLASGGDGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLV  139 (434)
T ss_pred             cccCCcceeEEEEEcCCcCeeeecCCCceEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCceee
Confidence            578899999999999999999999999999999654        2     1   24567889999999999999999999


Q ss_pred             EeeCCCcEEEEECCCCeEEEEec-CCCCeeEEEeecC
Q 021399           69 TGSADQTAKLWNVETGAQLFTFN-FDSPARSVDFAVG  104 (313)
Q Consensus        69 s~s~D~~v~vWd~~~~~~~~~~~-~~~~~~~~~~~~~  104 (313)
                      +++.|.++++||+..++....+. +..-+..+.|.|.
T Consensus       140 s~s~dns~~l~Dv~~G~l~~~~~dh~~yvqgvawDpl  176 (434)
T KOG1009|consen  140 SGSVDNSVRLWDVHAGQLLAILDDHEHYVQGVAWDPL  176 (434)
T ss_pred             eeeccceEEEEEeccceeEeeccccccccceeecchh
Confidence            99999999999999998776553 2233334444443

>KOG1963 consensus WD40 repeat protein [General function prediction only]

Probab=99.72  E-value=7.3e-15  Score=131.46  Aligned_cols=283  Identities=18%  Similarity=0.235  Sum_probs=180.7

Q ss_pred             cccccccccceeEEEEccCCCEEEEeeCCCCeEEEeCCCCcEEEEecCCCCceEEEEECCCCC---eEEEeeCCCcEEEE
Q 021399            3 PILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSM---TLITGSADQTAKLW   79 (313)
Q Consensus         3 ~~~l~~h~~~v~~~~fs~~g~~l~s~s~d~~i~iw~~~~~~~~~~~~~H~~~V~~~~~~~~~~---~l~s~s~D~~v~vW   79 (313)
                      |..|-|-...-..-.||+|+++++.+. +..|+||...++.++..+.+|..++..+.+.|...   ++.+++.||+|++|
T Consensus         9 ~~~lgg~n~~~~~avfSnD~k~l~~~~-~~~V~VyS~~Tg~~i~~l~~~~a~l~s~~~~~~~~~~~~~~~~sl~G~I~vw   87 (792)
T KOG1963|consen    9 PALLGGRNGNKSPAVFSNDAKFLFLCT-GNFVKVYSTATGECITSLEDHTAPLTSVIVLPSSENANYLIVCSLDGTIRVW   87 (792)
T ss_pred             eeeeccccceecccccccCCcEEEEee-CCEEEEEecchHhhhhhcccccCccceeeecCCCccceEEEEEecCccEEEe
Confidence            445555555555678999999999665 46899999999999999999999999999987643   67799999999999


Q ss_pred             ECCCCeEEEEecCCCCeeEEEeec----CCeEEEEECCCceec-----cccceeee--eeeCCCCCCCceEEEecCCCCc
Q 021399           80 NVETGAQLFTFNFDSPARSVDFAV----GDKLAVITTDPFMEL-----NSAIHVKR--IARDPADQGGESVLILKGPQGR  148 (313)
Q Consensus        80 d~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~-----~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~  148 (313)
                      |-..+..+.++....++..+.+.+    ....+..+......+     ....+..+  +.... ...++   ....+.. 
T Consensus        88 d~~~~~Llkt~~~~~~v~~~~~~~~~a~~s~~~~~s~~~~~~~~~~s~~~~~q~~~~~~~t~~-~~~~d---~~~~~~~-  162 (792)
T KOG1963|consen   88 DWSDGELLKTFDNNLPVHALVYKPAQADISANVYVSVEDYSILTTFSKKLSKQSSRFVLATFD-SAKGD---FLKEHQE-  162 (792)
T ss_pred             cCCCcEEEEEEecCCceeEEEechhHhCccceeEeecccceeeeecccccccceeeeEeeecc-ccchh---hhhhhcC-
Confidence            999999988887666665554432    122221221110000     00000000  00000 00000   0111111 


Q ss_pred             eEEEEEccCCCEEEEeeCCCeEEEEECCCCce-eeecccccCceeceEEEEECCCCCEEEEeeCCCcEEEEE-CC-CCc-
Q 021399          149 INRAVWGPLNRTIISAGEDAIVRIWDTETGKL-LKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWD-AR-TLE-  224 (313)
Q Consensus       149 i~~~~~~~~~~~i~t~~~d~~i~lwd~~~~~~-~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~dg~i~iwd-~~-~~~-  224 (313)
                      -..+..++.+++....- +..+.+|...++.. ........-|...+++++++|++.++|+|..||+|.+|. .. ... 
T Consensus       163 ~~~I~~~~~ge~~~i~~-~~~~~~~~v~~~~~~~~~~~~~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~  241 (792)
T KOG1963|consen  163 PKSIVDNNSGEFKGIVH-MCKIHIYFVPKHTKHTSSRDITVHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDS  241 (792)
T ss_pred             CccEEEcCCceEEEEEE-eeeEEEEEecccceeeccchhhhhhcccceeEEeccccceEEEeccCCcEEEEecccccccc
Confidence            23566777777655544 55688998876431 111122234777789999999999999999999999994 33 111 


Q ss_pred             -EEEEEe-cCCceeEEEeccCCCEEEEcccccCceeEeeccCCCceeeeeeehhhhhhhccccccccceeEEEECCCCCe
Q 021399          225 -LIKTYV-TERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKR  302 (313)
Q Consensus       225 -~~~~~~-~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~fspdgk~  302 (313)
                       -...+. +...+++++|+++|.+++.||...  .+.            .|...++++ +-+.--.++|..+.+|||+..
T Consensus       242 ~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~--VLv------------~Wq~~T~~k-qfLPRLgs~I~~i~vS~ds~~  306 (792)
T KOG1963|consen  242 ETCTLLHWHHDEVNSLSFSSDGAYLLSGGREG--VLV------------LWQLETGKK-QFLPRLGSPILHIVVSPDSDL  306 (792)
T ss_pred             ccceEEEecccccceeEEecCCceEeecccce--EEE------------EEeecCCCc-ccccccCCeeEEEEEcCCCCe
Confidence             123333 456899999999999988776432  222            344333331 112223789999999999999


Q ss_pred             eEEEE
Q 021399          303 YGFLL  307 (313)
Q Consensus       303 ~~~~~  307 (313)
                      ++.+.
T Consensus       307 ~sl~~  311 (792)
T KOG1963|consen  307 YSLVL  311 (792)
T ss_pred             EEEEe
Confidence            88764

>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.72  E-value=4.5e-17  Score=149.10  Aligned_cols=209  Identities=20%  Similarity=0.304  Sum_probs=160.8

Q ss_pred             cccccccceeEEEEccCCC-EEEEeeCCCCeEEEeCCCCcEEEEec--CCCCceEEEEECCC-CCeEEEeeCCCcEEEEE
Q 021399            5 LMKGHERPLTYLKYNKDGD-LLFSCAKDHTPTVWFADNGERLGTYR--GHNGAVWCCDVSRD-SMTLITGSADQTAKLWN   80 (313)
Q Consensus         5 ~l~~h~~~v~~~~fs~~g~-~l~s~s~d~~i~iw~~~~~~~~~~~~--~H~~~V~~~~~~~~-~~~l~s~s~D~~v~vWd   80 (313)
                      ....|+++|..+.|++... +|+||+.||.|.|||+++.+.-.+..  .-.+.|.+++|+.. ...|+|++.+|++-|||
T Consensus       111 ~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWD  190 (1049)
T KOG0307|consen  111 TKSKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPETPFTPGSQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWD  190 (1049)
T ss_pred             hhcccCCceeeeeccccCCceeeccCCCCcEEEeccCCcCCCCCCCCCCCcccceEeccchhhhHHhhccCCCCCceecc
Confidence            4567999999999999865 99999999999999999866554442  24578999999865 45899999999999999


Q ss_pred             CCCCeEEEEecCCC---CeeEEEeecCC--eEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEc
Q 021399           81 VETGAQLFTFNFDS---PARSVDFAVGD--KLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWG  155 (313)
Q Consensus        81 ~~~~~~~~~~~~~~---~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~  155 (313)
                      ++..+.+..+....   ....+.|+|+.  ++++.+.+.-   ...+.+|++.     ....++..+++|+..|.++.|+
T Consensus       191 lr~~~pii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~---~PviqlWDlR-----~assP~k~~~~H~~GilslsWc  262 (1049)
T KOG0307|consen  191 LRKKKPIIKLSDTPGRMHCSVLAWHPDHATQLLVASGDDS---APVIQLWDLR-----FASSPLKILEGHQRGILSLSWC  262 (1049)
T ss_pred             ccCCCcccccccCCCccceeeeeeCCCCceeeeeecCCCC---CceeEeeccc-----ccCCchhhhcccccceeeeccC
Confidence            99887776655433   35577888853  4444443321   1223334322     1234566778999999999999


Q ss_pred             cCC-CEEEEeeCCCeEEEEECCCCceeeecccccCceeceEEEEECCCCC-EEEEeeCCCcEEEEECCCCc
Q 021399          156 PLN-RTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGS-HFLTGSLDKSAKLWDARTLE  224 (313)
Q Consensus       156 ~~~-~~i~t~~~d~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~-~l~s~s~dg~i~iwd~~~~~  224 (313)
                      +.+ .++++++.|+.|.+|+.++++.+.++.   ....++..+.|.|... .+++++.||.|-|+.+....
T Consensus       263 ~~D~~lllSsgkD~~ii~wN~~tgEvl~~~p---~~~nW~fdv~w~pr~P~~~A~asfdgkI~I~sl~~~~  330 (1049)
T KOG0307|consen  263 PQDPRLLLSSGKDNRIICWNPNTGEVLGELP---AQGNWCFDVQWCPRNPSVMAAASFDGKISIYSLQGTD  330 (1049)
T ss_pred             CCCchhhhcccCCCCeeEecCCCceEeeecC---CCCcceeeeeecCCCcchhhhheeccceeeeeeecCC
Confidence            887 788999999999999999998887764   2567899999998766 78889999999999987643

>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]

Probab=99.71  E-value=2.1e-15  Score=120.62  Aligned_cols=165  Identities=18%  Similarity=0.268  Sum_probs=131.6

Q ss_pred             cccccccceeEEEEccCCCEEEEeeCCCCeEEEeCCCC---cEEEEecCCCCceEEEEECCCCCeEEEeeCCCcEEEEEC
Q 021399            5 LMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNG---ERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNV   81 (313)
Q Consensus         5 ~l~~h~~~v~~~~fs~~g~~l~s~s~d~~i~iw~~~~~---~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~v~vWd~   81 (313)
                      .+.--.++|+|-+|++|+..++.+-....+.||.....   +..++++.|...|++++|+|..+.++||+.|....||..
T Consensus         5 ~~~~~~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~   84 (361)
T KOG1523|consen    5 VFHRLLEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQ   84 (361)
T ss_pred             EeeeccCceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccCCCCcccccc
Confidence            34445678999999999999999999999999976554   467899999999999999999999999999999999987


Q ss_pred             CCCeEEEEecCCCCeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEccCCCEE
Q 021399           82 ETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTI  161 (313)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i  161 (313)
                      .++.. +                                                .+..++.-++....++.|+|.++.|
T Consensus        85 ~~~~~-W------------------------------------------------kptlvLlRiNrAAt~V~WsP~enkF  115 (361)
T KOG1523|consen   85 PSGGT-W------------------------------------------------KPTLVLLRINRAATCVKWSPKENKF  115 (361)
T ss_pred             CCCCe-e------------------------------------------------ccceeEEEeccceeeEeecCcCceE
Confidence            43210 0                                                1122233345567889999999999


Q ss_pred             EEeeCCCeEEEEECCCCcee--e-ecccccCceeceEEEEECCCCCEEEEeeCCCcEEEEEC
Q 021399          162 ISAGEDAIVRIWDTETGKLL--K-ESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDA  220 (313)
Q Consensus       162 ~t~~~d~~i~lwd~~~~~~~--~-~~~~~~~h~~~v~~~~~s~~~~~l~s~s~dg~i~iwd~  220 (313)
                      ++|+....|.+|=.+.....  + .+.  ..++..|++++|+|++-.++.||.|+++|++..
T Consensus       116 AVgSgar~isVcy~E~ENdWWVsKhik--kPirStv~sldWhpnnVLlaaGs~D~k~rVfSa  175 (361)
T KOG1523|consen  116 AVGSGARLISVCYYEQENDWWVSKHIK--KPIRSTVTSLDWHPNNVLLAAGSTDGKCRVFSA  175 (361)
T ss_pred             EeccCccEEEEEEEecccceehhhhhC--CccccceeeeeccCCcceecccccCcceeEEEE
Confidence            99999999999976643321  1 111  246789999999999999999999999999963

>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]

Probab=99.70  E-value=1.8e-15  Score=119.35  Aligned_cols=195  Identities=20%  Similarity=0.315  Sum_probs=141.5

Q ss_pred             ccccceeEEEEccCCCEEEEeeCCCCeEEEeCCCCcE-EEEe-----cCCCCceEEEEECC--CCCeEEEeeCCCcEEEE
Q 021399            8 GHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGER-LGTY-----RGHNGAVWCCDVSR--DSMTLITGSADQTAKLW   79 (313)
Q Consensus         8 ~h~~~v~~~~fs~~g~~l~s~s~d~~i~iw~~~~~~~-~~~~-----~~H~~~V~~~~~~~--~~~~l~s~s~D~~v~vW   79 (313)
                      .+-+.|.|+.|.|+++.|++-. |..|.+|+.+.+.. +..+     .+|+...++-+|+|  +++.+++ ..|++++.|
T Consensus       121 eavg~i~cvew~Pns~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~t-t~d~tl~~~  198 (370)
T KOG1007|consen  121 EAVGKINCVEWEPNSDKLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVAT-TSDSTLQFW  198 (370)
T ss_pred             HHhCceeeEEEcCCCCeeEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCccceEEE-eCCCcEEEE
Confidence            3455799999999999999776 78999999987755 3333     23677788899998  6777766 568999999


Q ss_pred             ECCCCeEEEEecCCCCeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEccCC-
Q 021399           80 NVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLN-  158 (313)
Q Consensus        80 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-  158 (313)
                      |+++.+....+.                                                   ..|...+..+.|+|+- 
T Consensus       199 D~RT~~~~~sI~---------------------------------------------------dAHgq~vrdlDfNpnkq  227 (370)
T KOG1007|consen  199 DLRTMKKNNSIE---------------------------------------------------DAHGQRVRDLDFNPNKQ  227 (370)
T ss_pred             Eccchhhhcchh---------------------------------------------------hhhcceeeeccCCCCce
Confidence            999765432221                                                   1244456666677764 


Q ss_pred             CEEEEeeCCCeEEEEECCCCc-eeeecccccCceeceEEEEECCCCC-EEEEeeCCCcEEEEECCCCc------------
Q 021399          159 RTIISAGEDAIVRIWDTETGK-LLKESDKETGHKKTITSLAKAADGS-HFLTGSLDKSAKLWDARTLE------------  224 (313)
Q Consensus       159 ~~i~t~~~d~~i~lwd~~~~~-~~~~~~~~~~h~~~v~~~~~s~~~~-~l~s~s~dg~i~iwd~~~~~------------  224 (313)
                      .++++||+||.|++||.++.+ ++.+   ..+|...|.++.|.|... .|+||+.|..|.+|...+-.            
T Consensus       228 ~~lvt~gDdgyvriWD~R~tk~pv~e---l~~HsHWvW~VRfn~~hdqLiLs~~SDs~V~Lsca~svSSE~qi~~~~des  304 (370)
T KOG1007|consen  228 HILVTCGDDGYVRIWDTRKTKFPVQE---LPGHSHWVWAVRFNPEHDQLILSGGSDSAVNLSCASSVSSEQQIEFEDDES  304 (370)
T ss_pred             EEEEEcCCCccEEEEeccCCCccccc---cCCCceEEEEEEecCccceEEEecCCCceeEEEeccccccccccccccccc
Confidence            467899999999999987543 3333   357999999999998644 68899999999999754311            


Q ss_pred             ------------E-----EEEEe-cCCceeEEEeccCCCEEEEcccccCcee
Q 021399          225 ------------L-----IKTYV-TERPVNAVTMSPLLDHVVLGGGQDASAV  258 (313)
Q Consensus       225 ------------~-----~~~~~-~~~~~~~~~~~p~~~~~~~~~~~~~~~~  258 (313)
                                  +     +.++. ++..+.+++|+...+.++++=+.|+..+
T Consensus       305 e~e~~dseer~kpL~dg~l~tydehEDSVY~~aWSsadPWiFASLSYDGRvi  356 (370)
T KOG1007|consen  305 ESEDEDSEERVKPLQDGQLETYDEHEDSVYALAWSSADPWIFASLSYDGRVI  356 (370)
T ss_pred             cCcchhhHHhcccccccccccccccccceEEEeeccCCCeeEEEeccCceEE
Confidence                        1     11221 3456899999998898888766665443

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=99.69  E-value=5.1e-16  Score=132.21  Aligned_cols=220  Identities=20%  Similarity=0.303  Sum_probs=150.7

Q ss_pred             ccccccccceeEEEEccCCCEEEEeeCCCCeEEEeCCCCcEEEEec-CCCCceEEEEECC--CCCeEEEeeCCCcEEEEE
Q 021399            4 ILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYR-GHNGAVWCCDVSR--DSMTLITGSADQTAKLWN   80 (313)
Q Consensus         4 ~~l~~h~~~v~~~~fs~~g~~l~s~s~d~~i~iw~~~~~~~~~~~~-~H~~~V~~~~~~~--~~~~l~s~s~D~~v~vWd   80 (313)
                      ..|.||++=|+||.|+.||.+|+|||.|-.+.|||.-..++++.+. ||...|+++.|-|  ++++++||+.|..|+++|
T Consensus        44 ~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~lfd  123 (758)
T KOG1310|consen   44 AELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKLFD  123 (758)
T ss_pred             hhhccccceecceeecCCCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceEEEEe
Confidence            4789999999999999999999999999999999998888877774 7999999999987  456899999999999999


Q ss_pred             CCCCeEEEEecCCCCeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEccCC-C
Q 021399           81 VETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLN-R  159 (313)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~  159 (313)
                      +.+.+.--   ..                                       ....+....+..|..++..++-.|.+ .
T Consensus       124 l~~~~~~~---~d---------------------------------------~~~~~~~~~~~cht~rVKria~~p~~Ph  161 (758)
T KOG1310|consen  124 LDSSKEGG---MD---------------------------------------HGMEETTRCWSCHTDRVKRIATAPNGPH  161 (758)
T ss_pred             cccccccc---cc---------------------------------------cCccchhhhhhhhhhhhhheecCCCCCc
Confidence            97532100   00                                       00011122334455566666666666 6


Q ss_pred             EEEEeeCCCeEEEEECCCCceeeecc-------cccCceeceEEEEECCC-CCEEEEeeCCCcEEEEECCCC-c------
Q 021399          160 TIISAGEDAIVRIWDTETGKLLKESD-------KETGHKKTITSLAKAAD-GSHFLTGSLDKSAKLWDARTL-E------  224 (313)
Q Consensus       160 ~i~t~~~d~~i~lwd~~~~~~~~~~~-------~~~~h~~~v~~~~~s~~-~~~l~s~s~dg~i~iwd~~~~-~------  224 (313)
                      .|.++++||+|+-+|++.......-.       .....--...++..+|. ..+|+.|+.|-..++||.+.. +      
T Consensus       162 tfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~lielk~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~  241 (758)
T KOG1310|consen  162 TFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQLIELKCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDG  241 (758)
T ss_pred             eEEEecCCcceeeecccCCccCCccccccHHHHHhchhhheeeeeeecCCCCceEEecCCCchhhhhhhhhhccCCCCCc
Confidence            78999999999999987532111100       00011234567778875 457899999999999994321 1      


Q ss_pred             -----------EEEEEecC-------------CceeEEEeccCCCEEEEcccccCceeEeeccCCCc
Q 021399          225 -----------LIKTYVTE-------------RPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGK  267 (313)
Q Consensus       225 -----------~~~~~~~~-------------~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~  267 (313)
                                 |++-+...             ..+.-+.|+|.|.-+++.=+  +-.||.+|...++
T Consensus       242 ~~~~~pp~~~~cv~yf~p~hlkn~~gn~~~~~~~~t~vtfnpNGtElLvs~~--gEhVYlfdvn~~~  306 (758)
T KOG1310|consen  242 TMNTCPPKDCRCVRYFSPGHLKNSQGNLDRYITCCTYVTFNPNGTELLVSWG--GEHVYLFDVNEDK  306 (758)
T ss_pred             cccCCCCcccchhheecCccccCcccccccceeeeEEEEECCCCcEEEEeeC--CeEEEEEeecCCC
Confidence                       22222110             12456789999888887643  2346777654433

>KOG2139 consensus WD40 repeat protein [General function prediction only]

Probab=99.69  E-value=2.2e-14  Score=116.60  Aligned_cols=253  Identities=15%  Similarity=0.195  Sum_probs=165.3

Q ss_pred             ceeEEEEccCCCEEEEeeCCCCeEEEeCCCCcEEEEecC-CCCceEEEEECCCCC-eEEEeeCCCcEEEEECCCCeEEEE
Q 021399           12 PLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRG-HNGAVWCCDVSRDSM-TLITGSADQTAKLWNVETGAQLFT   89 (313)
Q Consensus        12 ~v~~~~fs~~g~~l~s~s~d~~i~iw~~~~~~~~~~~~~-H~~~V~~~~~~~~~~-~l~s~s~D~~v~vWd~~~~~~~~~   89 (313)
                      .+..++|++.--.++++..|..|++|+-.. +....++. -...|.|++|-|.+. .|+.|. -+-|.+|........  
T Consensus       100 dlr~~aWhqH~~~fava~nddvVriy~kss-t~pt~Lks~sQrnvtclawRPlsaselavgC-r~gIciW~~s~tln~--  175 (445)
T KOG2139|consen  100 DLRGVAWHQHIIAFAVATNDDVVRIYDKSS-TCPTKLKSVSQRNVTCLAWRPLSASELAVGC-RAGICIWSDSRTLNA--  175 (445)
T ss_pred             ceeeEeechhhhhhhhhccCcEEEEeccCC-CCCceecchhhcceeEEEeccCCcceeeeee-cceeEEEEcCccccc--
Confidence            456789999878889999999999998665 44445554 346799999999765 455544 456889986532110  


Q ss_pred             ecCCCCeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEccCCCEEEEee-CCC
Q 021399           90 FNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAG-EDA  168 (313)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~t~~-~d~  168 (313)
                         ...+..                                 .......+....+| .+|++++|+++|..+++++ .|.
T Consensus       176 ---~r~~~~---------------------------------~s~~~~qvl~~pgh-~pVtsmqwn~dgt~l~tAS~gss  218 (445)
T KOG2139|consen  176 ---NRNIRM---------------------------------MSTHHLQVLQDPGH-NPVTSMQWNEDGTILVTASFGSS  218 (445)
T ss_pred             ---cccccc---------------------------------ccccchhheeCCCC-ceeeEEEEcCCCCEEeecccCcc
Confidence               000000                                 00001122333444 6899999999999999987 456


Q ss_pred             eEEEEECCCCceeeecccccCceeceEEEEECCCCCEEEEeeCCCcEEEEE-CCCCcEEEEEecCCceeEEEeccCCCEE
Q 021399          169 IVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWD-ARTLELIKTYVTERPVNAVTMSPLLDHV  247 (313)
Q Consensus       169 ~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~dg~i~iwd-~~~~~~~~~~~~~~~~~~~~~~p~~~~~  247 (313)
                      .|.|||+.++.++.-..   -.-+.+.-+.|||||++|+++..|+..++|+ .++..+.+-....+.+...+|+|.|..+
T Consensus       219 si~iWdpdtg~~~pL~~---~glgg~slLkwSPdgd~lfaAt~davfrlw~e~q~wt~erw~lgsgrvqtacWspcGsfL  295 (445)
T KOG2139|consen  219 SIMIWDPDTGQKIPLIP---KGLGGFSLLKWSPDGDVLFAATCDAVFRLWQENQSWTKERWILGSGRVQTACWSPCGSFL  295 (445)
T ss_pred             eEEEEcCCCCCcccccc---cCCCceeeEEEcCCCCEEEEecccceeeeehhcccceecceeccCCceeeeeecCCCCEE
Confidence            89999998877543221   1245788899999999999999999999994 4445555555556689999999999988


Q ss_pred             EEcccccCcee-EeeccCCCcee--------eeeeehhhhhhhccccccccceeEEEECCCCCeeEEEEE
Q 021399          248 VLGGGQDASAV-TTTDHRAGKFE--------AKFFDKILQEEIGGVKGHFGPINALAFNPDGKRYGFLLL  308 (313)
Q Consensus       248 ~~~~~~~~~~~-~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~h~~~V~~~~fspdgk~~~~~~~  308 (313)
                      +.+........ ..++.+...+.        .-+-|...-.....-.--.+...+++|.|.|.++|.++-
T Consensus       296 Lf~~sgsp~lysl~f~~~~~~~~~~~~~k~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsGeyLav~fK  365 (445)
T KOG2139|consen  296 LFACSGSPRLYSLTFDGEDSVFLRPQSIKRVLLIADLQEVTICAGQRLCCGEAQCLAWDPSGEYLAVIFK  365 (445)
T ss_pred             EEEEcCCceEEEEeecCCCccccCcccceeeeeeccchhhhhhcCcccccCccceeeECCCCCEEEEEEc
Confidence            87754433222 23344333221        111222111111111112578899999999999998763

>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]

Probab=99.68  E-value=8.7e-16  Score=132.94  Aligned_cols=189  Identities=20%  Similarity=0.263  Sum_probs=138.9

Q ss_pred             ceeEEEEcc-CCCEEEEeeCCCCeEEEeCCCC-------cEEEEecCCCCceEEEEECCC-CCeEEEeeCCCcEEEEECC
Q 021399           12 PLTYLKYNK-DGDLLFSCAKDHTPTVWFADNG-------ERLGTYRGHNGAVWCCDVSRD-SMTLITGSADQTAKLWNVE   82 (313)
Q Consensus        12 ~v~~~~fs~-~g~~l~s~s~d~~i~iw~~~~~-------~~~~~~~~H~~~V~~~~~~~~-~~~l~s~s~D~~v~vWd~~   82 (313)
                      .|+.+.|+| |.+.|+.+..||.|++|.+..+       +..+.+.+|...|+++.|+|= .+.|++++.|.+|++||+.
T Consensus       629 ~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~  708 (1012)
T KOG1445|consen  629 LVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEMTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWDLA  708 (1012)
T ss_pred             eeeecccCCCChHHeeecccCceEEEEEeccCCCCcccCCcceeeecccceEEEEEecchhhhHhhhhhccceeeeeehh
Confidence            478899998 5689999999999999987754       345678999999999999984 4589999999999999988


Q ss_pred             CCeEEEEecCCCCeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEccCCCEEE
Q 021399           83 TGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTII  162 (313)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~  162 (313)
                      +++.                                                    ...+.+|...|..++|+|+|+.++
T Consensus       709 ~~~~----------------------------------------------------~~~l~gHtdqIf~~AWSpdGr~~A  736 (1012)
T KOG1445|consen  709 NAKL----------------------------------------------------YSRLVGHTDQIFGIAWSPDGRRIA  736 (1012)
T ss_pred             hhhh----------------------------------------------------hheeccCcCceeEEEECCCCccee
Confidence            6542                                                    123568999999999999999999


Q ss_pred             EeeCCCeEEEEECCCCce-eeecccccCceeceEEEEECCCCCEEEEeeCC----CcEEEEECCCC--cEEEEEec--CC
Q 021399          163 SAGEDAIVRIWDTETGKL-LKESDKETGHKKTITSLAKAADGSHFLTGSLD----KSAKLWDARTL--ELIKTYVT--ER  233 (313)
Q Consensus       163 t~~~d~~i~lwd~~~~~~-~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d----g~i~iwd~~~~--~~~~~~~~--~~  233 (313)
                      +.+.||+|++++.+++.. +.+-....+  ..--.+.|.-||.+++..+.|    .+|.+||.++.  .++.+...  ..
T Consensus       737 tVcKDg~~rVy~Prs~e~pv~Eg~gpvg--tRgARi~wacdgr~viv~Gfdk~SeRQv~~Y~Aq~l~~~pl~t~~lDvap  814 (1012)
T KOG1445|consen  737 TVCKDGTLRVYEPRSREQPVYEGKGPVG--TRGARILWACDGRIVIVVGFDKSSERQVQMYDAQTLDLRPLYTQVLDVAP  814 (1012)
T ss_pred             eeecCceEEEeCCCCCCCccccCCCCcc--CcceeEEEEecCcEEEEecccccchhhhhhhhhhhccCCcceeeeecccC
Confidence            999999999999887642 332221111  222346688899999888776    46889998764  34433321  11


Q ss_pred             ceeEEEeccCCCEEEEccccc
Q 021399          234 PVNAVTMSPLLDHVVLGGGQD  254 (313)
Q Consensus       234 ~~~~~~~~p~~~~~~~~~~~~  254 (313)
                      ...--.+.++.+.++++|..|
T Consensus       815 s~LvP~YD~Ds~~lfltGKGD  835 (1012)
T KOG1445|consen  815 SPLVPHYDYDSNVLFLTGKGD  835 (1012)
T ss_pred             ccccccccCCCceEEEecCCC
Confidence            122223456667777776544

>KOG1963 consensus WD40 repeat protein [General function prediction only]

Probab=99.67  E-value=1.6e-14  Score=129.24  Aligned_cols=290  Identities=19%  Similarity=0.237  Sum_probs=180.3

Q ss_pred             cccccceeEEEEccCCCEEEEeeCCCCeEEEe-CC---CCcEEEEecCCCCceEEEEECCCCCeEEEeeCCCcEEEEECC
Q 021399            7 KGHERPLTYLKYNKDGDLLFSCAKDHTPTVWF-AD---NGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVE   82 (313)
Q Consensus         7 ~~h~~~v~~~~fs~~g~~l~s~s~d~~i~iw~-~~---~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~v~vWd~~   82 (313)
                      +.|...++|.++||++.++++|..||.|.+|. ..   .......+.-|..+|.+++|+++|.+|+|||+.+.+-+|.++
T Consensus       202 ~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~  281 (792)
T KOG1963|consen  202 VHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSFSSDGAYLLSGGREGVLVLWQLE  281 (792)
T ss_pred             hhhcccceeEEeccccceEEEeccCCcEEEEeccccccccccceEEEecccccceeEEecCCceEeecccceEEEEEeec
Confidence            45777789999999999999999999999994 33   223466788899999999999999999999999999999999


Q ss_pred             CCeEEEEecCCCCeeEEEeecCCeEEEE-ECCCceeccc--cceeeeeeeCCCCCCCceEEEecCCCCceEEEEEccCCC
Q 021399           83 TGAQLFTFNFDSPARSVDFAVGDKLAVI-TTDPFMELNS--AIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNR  159 (313)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~  159 (313)
                      +++..+......++..+.++|++....+ ..|.-+.+-.  ................+.   -...++-...++++|..+
T Consensus       282 T~~kqfLPRLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~---k~~~~~l~t~~~idpr~~  358 (792)
T KOG1963|consen  282 TGKKQFLPRLGSPILHIVVSPDSDLYSLVLEDNQIHLIKASDLEIKSTISGIKPPTPST---KTRPQSLTTGVSIDPRTN  358 (792)
T ss_pred             CCCcccccccCCeeEEEEEcCCCCeEEEEecCceEEEEeccchhhhhhccCccCCCccc---cccccccceeEEEcCCCC
Confidence            9987666677889999999986654443 3343221110  000000000000000000   011233446677888777


Q ss_pred             EEEEeeCCCeEEEEECCCCceeeecccc-----c---CceeceEEEEECCCCCEEEEee--------CCC--cEEEEECC
Q 021399          160 TIISAGEDAIVRIWDTETGKLLKESDKE-----T---GHKKTITSLAKAADGSHFLTGS--------LDK--SAKLWDAR  221 (313)
Q Consensus       160 ~i~t~~~d~~i~lwd~~~~~~~~~~~~~-----~---~h~~~v~~~~~s~~~~~l~s~s--------~dg--~i~iwd~~  221 (313)
                      .++-.+.-+.|.+||+.+.+.+..+...     .   .+...+++++.+.+|++++|.-        .||  .+|+|-..
T Consensus       359 ~~vln~~~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~n~~v~itav~~~~~gs~maT~E~~~d~~~~~~~e~~LKFW~~n  438 (792)
T KOG1963|consen  359 SLVLNGHPGHVQFYDLYTDSTIYKLQVCDENYSDGDVNIQVGITAVARSRFGSWMATLEARIDKFNFFDGEVSLKFWQYN  438 (792)
T ss_pred             ceeecCCCceEEEEeccccceeeeEEEEeecccCCcceeEEeeeeehhhccceEEEEeeeeehhhhccCceEEEEEEEEc
Confidence            7888899999999999877655443221     1   2345678888899999999863        344  46789543


Q ss_pred             C----CcEEEEEe--cCCceeE-EEeccCCCEEEEcccccCceeEeeccCCCc---eeeeeeehhhhhhhccccccccce
Q 021399          222 T----LELIKTYV--TERPVNA-VTMSPLLDHVVLGGGQDASAVTTTDHRAGK---FEAKFFDKILQEEIGGVKGHFGPI  291 (313)
Q Consensus       222 ~----~~~~~~~~--~~~~~~~-~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~h~~~V  291 (313)
                      .    ..+...+.  ++....+ +..+|.....+++++.++ .+.+|-...-.   -.-..|-   ...++.  -|..++
T Consensus       439 ~~~kt~~L~T~I~~PH~~~~vat~~~~~~rs~~~vta~~dg-~~KiW~~~~~~n~~k~~s~W~---c~~i~s--y~k~~i  512 (792)
T KOG1963|consen  439 PNSKTFILNTKINNPHGNAFVATIFLNPTRSVRCVTASVDG-DFKIWVFTDDSNIYKKSSNWT---CKAIGS--YHKTPI  512 (792)
T ss_pred             CCcceeEEEEEEecCCCceeEEEEEecCcccceeEEeccCC-eEEEEEEecccccCcCccceE---Eeeeec--cccCcc
Confidence            3    23333332  2222333 333444432444444332 22233221100   0011121   222333  378999


Q ss_pred             eEEEECCCCCeeEE
Q 021399          292 NALAFNPDGKRYGF  305 (313)
Q Consensus       292 ~~~~fspdgk~~~~  305 (313)
                      ++++||.||..+|-
T Consensus       513 ~a~~fs~dGslla~  526 (792)
T KOG1963|consen  513 TALCFSQDGSLLAV  526 (792)
T ss_pred             cchhhcCCCcEEEE
Confidence            99999999987653

>PRK03629 tolB translocation protein TolB; Provisional

Probab=99.67  E-value=3.6e-14  Score=125.67  Aligned_cols=225  Identities=12%  Similarity=0.085  Sum_probs=142.0

Q ss_pred             cccccccccceeEEEEccCCCEEEEeeC---CCCeEEEeCCCCcEEEEecCCCCceEEEEECCCCCeEEEe-eCCC--cE
Q 021399            3 PILMKGHERPLTYLKYNKDGDLLFSCAK---DHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITG-SADQ--TA   76 (313)
Q Consensus         3 ~~~l~~h~~~v~~~~fs~~g~~l~s~s~---d~~i~iw~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~-s~D~--~v   76 (313)
                      ++.+..+...+...+|||||+.|+..+.   +..+.+|++.+++.. .+....+.+..+.|+|||+.++.. +.++  .|
T Consensus       191 ~~~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~-~l~~~~~~~~~~~~SPDG~~La~~~~~~g~~~I  269 (429)
T PRK03629        191 QFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVR-QVASFPRHNGAPAFSPDGSKLAFALSKTGSLNL  269 (429)
T ss_pred             CEEeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeE-EccCCCCCcCCeEECCCCCEEEEEEcCCCCcEE
Confidence            4445566778899999999999987653   456889999887542 222223334568999999876643 4455  47


Q ss_pred             EEEECCCCeEEEEecCCCCeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEcc
Q 021399           77 KLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGP  156 (313)
Q Consensus        77 ~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~  156 (313)
                      .+||+.+++.....                                                     .+...+....|+|
T Consensus       270 ~~~d~~tg~~~~lt-----------------------------------------------------~~~~~~~~~~wSP  296 (429)
T PRK03629        270 YVMDLASGQIRQVT-----------------------------------------------------DGRSNNTEPTWFP  296 (429)
T ss_pred             EEEECCCCCEEEcc-----------------------------------------------------CCCCCcCceEECC
Confidence            77888765432110                                                     0112234567999


Q ss_pred             CCCEEEEeeCC-C--eEEEEECCCCceeeecccccCceeceEEEEECCCCCEEEEeeCC---CcEEEEECCCCcEEEEEe
Q 021399          157 LNRTIISAGED-A--IVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLD---KSAKLWDARTLELIKTYV  230 (313)
Q Consensus       157 ~~~~i~t~~~d-~--~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d---g~i~iwd~~~~~~~~~~~  230 (313)
                      +++.|+..+.+ +  .|.++|+..+.. ..+..   +........|+|||++|+..+.+   ..|.+||+++++. ..+.
T Consensus       297 DG~~I~f~s~~~g~~~Iy~~d~~~g~~-~~lt~---~~~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~-~~Lt  371 (429)
T PRK03629        297 DSQNLAYTSDQAGRPQVYKVNINGGAP-QRITW---EGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGV-QVLT  371 (429)
T ss_pred             CCCEEEEEeCCCCCceEEEEECCCCCe-EEeec---CCCCccCEEECCCCCEEEEEEccCCCceEEEEECCCCCe-EEeC
Confidence            99988776654 3  455557766543 22221   22345578899999998876654   3588899988864 3343


Q ss_pred             cCCceeEEEeccCCCEEEEcccccCceeEeeccCCCceeeeeeehhhhhhhccccccccceeEEEECC
Q 021399          231 TERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNP  298 (313)
Q Consensus       231 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~fsp  298 (313)
                      ........+|+|++..++.++......           .+.+++. .++....+.+|.+.+...+|+|
T Consensus       372 ~~~~~~~p~~SpDG~~i~~~s~~~~~~-----------~l~~~~~-~G~~~~~l~~~~~~~~~p~Wsp  427 (429)
T PRK03629        372 DTFLDETPSIAPNGTMVIYSSSQGMGS-----------VLNLVST-DGRFKARLPATDGQVKFPAWSP  427 (429)
T ss_pred             CCCCCCCceECCCCCEEEEEEcCCCce-----------EEEEEEC-CCCCeEECccCCCCcCCcccCC
Confidence            333345678999999888765432211           1223332 2333344567888899999987

>PRK04922 tolB translocation protein TolB; Provisional

Probab=99.66  E-value=4.1e-14  Score=125.78  Aligned_cols=224  Identities=13%  Similarity=0.086  Sum_probs=142.4

Q ss_pred             cccccccccceeEEEEccCCCEEEEeeCC---CCeEEEeCCCCcEEEEecCCCCceEEEEECCCCCeE-EEeeCCC--cE
Q 021399            3 PILMKGHERPLTYLKYNKDGDLLFSCAKD---HTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTL-ITGSADQ--TA   76 (313)
Q Consensus         3 ~~~l~~h~~~v~~~~fs~~g~~l~s~s~d---~~i~iw~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l-~s~s~D~--~v   76 (313)
                      |+.+..|...+.+.+|+|||+.|+..+.+   ..|.+||+.+++.. .+..+.+...+++|+|||+.+ ++.+.++  .|
T Consensus       196 ~~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~-~l~~~~g~~~~~~~SpDG~~l~~~~s~~g~~~I  274 (433)
T PRK04922        196 PQTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQRE-LVASFRGINGAPSFSPDGRRLALTLSRDGNPEI  274 (433)
T ss_pred             ceEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEE-EeccCCCCccCceECCCCCEEEEEEeCCCCceE
Confidence            55677777889999999999999988743   46999999887653 334445555678999999865 4556665  48


Q ss_pred             EEEECCCCeEEEEecCCCCeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEcc
Q 021399           77 KLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGP  156 (313)
Q Consensus        77 ~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~  156 (313)
                      .+||+.+++.....                                                     .+........|+|
T Consensus       275 y~~d~~~g~~~~lt-----------------------------------------------------~~~~~~~~~~~sp  301 (433)
T PRK04922        275 YVMDLGSRQLTRLT-----------------------------------------------------NHFGIDTEPTWAP  301 (433)
T ss_pred             EEEECCCCCeEECc-----------------------------------------------------cCCCCccceEECC
Confidence            88888765432110                                                     0111223457899


Q ss_pred             CCCEEEEeeC-CC--eEEEEECCCCceeeecccccCceeceEEEEECCCCCEEEEeeCCC---cEEEEECCCCcEEEEEe
Q 021399          157 LNRTIISAGE-DA--IVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDK---SAKLWDARTLELIKTYV  230 (313)
Q Consensus       157 ~~~~i~t~~~-d~--~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~dg---~i~iwd~~~~~~~~~~~  230 (313)
                      +++.++.++. ++  .|+++|+.+++.. .+..   +.......+|+|||+.|+..+.++   .|.+||+.+++.. .+.
T Consensus       302 DG~~l~f~sd~~g~~~iy~~dl~~g~~~-~lt~---~g~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~-~Lt  376 (433)
T PRK04922        302 DGKSIYFTSDRGGRPQIYRVAASGGSAE-RLTF---QGNYNARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSVR-TLT  376 (433)
T ss_pred             CCCEEEEEECCCCCceEEEEECCCCCeE-Eeec---CCCCccCEEECCCCCEEEEEECCCCceeEEEEECCCCCeE-ECC
Confidence            9988877653 34  3777777665532 2221   222344689999999988765443   5899999887764 443


Q ss_pred             cCCceeEEEeccCCCEEEEcccccC-ceeEeeccCCCceeeeeeehhhhhhhccccccccceeEEEECC
Q 021399          231 TERPVNAVTMSPLLDHVVLGGGQDA-SAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNP  298 (313)
Q Consensus       231 ~~~~~~~~~~~p~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~fsp  298 (313)
                      ........+|+|++..++.+....+ ..++            .++.. +.....+..+.+.+...+|+|
T Consensus       377 ~~~~~~~p~~spdG~~i~~~s~~~g~~~L~------------~~~~~-g~~~~~l~~~~g~~~~p~wsp  432 (433)
T PRK04922        377 PGSLDESPSFAPNGSMVLYATREGGRGVLA------------AVSTD-GRVRQRLVSADGEVREPAWSP  432 (433)
T ss_pred             CCCCCCCceECCCCCEEEEEEecCCceEEE------------EEECC-CCceEEcccCCCCCCCCccCC
Confidence            3333456789999998876543221 2233            33321 222223344556777778876

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=99.65  E-value=7.3e-15  Score=127.98  Aligned_cols=228  Identities=19%  Similarity=0.296  Sum_probs=158.1

Q ss_pred             ccccccccceeEEEEccCCCEEEEeeCCCCeEEEeCCCCcEEEEec-CCCCceEEEEECCCCCeEEEeeCCCcEEEEECC
Q 021399            4 ILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYR-GHNGAVWCCDVSRDSMTLITGSADQTAKLWNVE   82 (313)
Q Consensus         4 ~~l~~h~~~v~~~~fs~~g~~l~s~s~d~~i~iw~~~~~~~~~~~~-~H~~~V~~~~~~~~~~~l~s~s~D~~v~vWd~~   82 (313)
                      .+|+||++-|+|++|+.||++++||+.|+.|.+|+.+-   ...++ .|.+.|.|+.|+|-++.++||+-.. .-+|+.+
T Consensus        47 qtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~kl---EG~LkYSH~D~IQCMsFNP~~h~LasCsLsd-FglWS~~  122 (1081)
T KOG1538|consen   47 QPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKL---EGILKYSHNDAIQCMSFNPITHQLASCSLSD-FGLWSPE  122 (1081)
T ss_pred             cccccccceEEEEEEccCCceeccCCCceeEEEecccc---cceeeeccCCeeeEeecCchHHHhhhcchhh-ccccChh
Confidence            47999999999999999999999999999999997543   23343 6999999999999999999998643 4579876


Q ss_pred             CCeEEEEecCCCCeeEEEeecCCeEEEE-ECCCceeccccceeeeeeeCCCCCCCceEEEe---cCCCCceEEEEEccCC
Q 021399           83 TGAQLFTFNFDSPARSVDFAVGDKLAVI-TTDPFMELNSAIHVKRIARDPADQGGESVLIL---KGPQGRINRAVWGPLN  158 (313)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~i~~~~~~~~~  158 (313)
                      ... +........+.+++|..+++..+. ..++.+.+      ++       ..++....+   -|++++|.+++|+|..
T Consensus       123 qK~-V~K~kss~R~~~CsWtnDGqylalG~~nGTIsi------RN-------k~gEek~~I~Rpgg~Nspiwsi~~~p~s  188 (1081)
T KOG1538|consen  123 QKS-VSKHKSSSRIICCSWTNDGQYLALGMFNGTISI------RN-------KNGEEKVKIERPGGSNSPIWSICWNPSS  188 (1081)
T ss_pred             hhh-HHhhhhheeEEEeeecCCCcEEEEeccCceEEe------ec-------CCCCcceEEeCCCCCCCCceEEEecCCC
Confidence            533 222223345667778776665544 33333322      11       111111122   2467889999999874


Q ss_pred             -----CEEEEeeCCCeEEEEECCCCceeeecccccCceeceEEEEECCCCCEEEEeeCCCcEEEEECCCCcEEEEEe-cC
Q 021399          159 -----RTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYV-TE  232 (313)
Q Consensus       159 -----~~i~t~~~d~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~-~~  232 (313)
                           ..+++.....++..+.+. |+.+..   ...-+....|+.+.++|.+++.|+.|+.+++|. +.|-.+.+.. .+
T Consensus       189 g~G~~di~aV~DW~qTLSFy~Ls-G~~Igk---~r~L~FdP~CisYf~NGEy~LiGGsdk~L~~fT-R~GvrLGTvg~~D  263 (1081)
T KOG1538|consen  189 GEGRNDILAVADWGQTLSFYQLS-GKQIGK---DRALNFDPCCISYFTNGEYILLGGSDKQLSLFT-RDGVRLGTVGEQD  263 (1081)
T ss_pred             CCCccceEEEEeccceeEEEEec-ceeecc---cccCCCCchhheeccCCcEEEEccCCCceEEEe-ecCeEEeeccccc
Confidence                 356666666666666553 443321   112345678999999999999999999999995 4455555543 23


Q ss_pred             CceeEEEeccCCCEEEEccccc
Q 021399          233 RPVNAVTMSPLLDHVVLGGGQD  254 (313)
Q Consensus       233 ~~~~~~~~~p~~~~~~~~~~~~  254 (313)
                      .=+-+++.+|.++++++++-++
T Consensus       264 ~WIWtV~~~PNsQ~v~~GCqDG  285 (1081)
T KOG1538|consen  264 SWIWTVQAKPNSQYVVVGCQDG  285 (1081)
T ss_pred             eeEEEEEEccCCceEEEEEccC
Confidence            4477899999999988876443

>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]

Probab=99.65  E-value=1.8e-15  Score=131.03  Aligned_cols=187  Identities=17%  Similarity=0.197  Sum_probs=136.9

Q ss_pred             EEccCCCEEEE--eeCCCCeEEEeCCCCc-EE-EEecC--CCCceEEEEECC-CCCeEEEeeCCCcEEEEECCCCeEEEE
Q 021399           17 KYNKDGDLLFS--CAKDHTPTVWFADNGE-RL-GTYRG--HNGAVWCCDVSR-DSMTLITGSADQTAKLWNVETGAQLFT   89 (313)
Q Consensus        17 ~fs~~g~~l~s--~s~d~~i~iw~~~~~~-~~-~~~~~--H~~~V~~~~~~~-~~~~l~s~s~D~~v~vWd~~~~~~~~~   89 (313)
                      .|..+.++.+.  .+..|.|-|+++.... +. ..+.+  ....|+.+.|+| |.+.|+.++.||.|++|-+..+..-. 
T Consensus       586 Gfcan~~rvAVPL~g~gG~iai~el~~PGrLPDgv~p~l~Ngt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e-  664 (1012)
T KOG1445|consen  586 GFCANNKRVAVPLAGSGGVIAIYELNEPGRLPDGVMPGLFNGTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPE-  664 (1012)
T ss_pred             ceeeccceEEEEecCCCceEEEEEcCCCCCCCcccccccccCceeeecccCCCChHHeeecccCceEEEEEeccCCCCc-
Confidence            34555666655  4557999999987432 21 11221  234689999998 56789999999999999987543210 


Q ss_pred             ecCCCCeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEccC-CCEEEEeeCCC
Q 021399           90 FNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPL-NRTIISAGEDA  168 (313)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~i~t~~~d~  168 (313)
                                                                  ....+-..+..|..+|+++.|+|. .+.+++++.|.
T Consensus       665 --------------------------------------------~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~  700 (1012)
T KOG1445|consen  665 --------------------------------------------NEMTPEKILTIHGEKITSLRFHPLAADVLAVASYDS  700 (1012)
T ss_pred             --------------------------------------------ccCCcceeeecccceEEEEEecchhhhHhhhhhccc
Confidence                                                        011223345678889999999986 46788999999


Q ss_pred             eEEEEECCCCceeeecccccCceeceEEEEECCCCCEEEEeeCCCcEEEEECCCCc-EEEEEec--CCceeEEEeccCCC
Q 021399          169 IVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLE-LIKTYVT--ERPVNAVTMSPLLD  245 (313)
Q Consensus       169 ~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~-~~~~~~~--~~~~~~~~~~p~~~  245 (313)
                      +|+|||+.+.+..+++   .+|.+.|..++|||+|..+|+.+.||+|++|+.++.+ ++++-..  ......+.|..++.
T Consensus       701 Ti~lWDl~~~~~~~~l---~gHtdqIf~~AWSpdGr~~AtVcKDg~~rVy~Prs~e~pv~Eg~gpvgtRgARi~wacdgr  777 (1012)
T KOG1445|consen  701 TIELWDLANAKLYSRL---VGHTDQIFGIAWSPDGRRIATVCKDGTLRVYEPRSREQPVYEGKGPVGTRGARILWACDGR  777 (1012)
T ss_pred             eeeeeehhhhhhhhee---ccCcCceeEEEECCCCcceeeeecCceEEEeCCCCCCCccccCCCCccCcceeEEEEecCc
Confidence            9999999988776655   4799999999999999999999999999999998754 4444322  22345577888888


Q ss_pred             EEEEcc
Q 021399          246 HVVLGG  251 (313)
Q Consensus       246 ~~~~~~  251 (313)
                      ++++.|
T Consensus       778 ~viv~G  783 (1012)
T KOG1445|consen  778 IVIVVG  783 (1012)
T ss_pred             EEEEec
Confidence            877765

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=99.65  E-value=4.9e-13  Score=114.96  Aligned_cols=263  Identities=14%  Similarity=0.135  Sum_probs=150.0

Q ss_pred             EEEeeCCCCeEEEeCCC-Cc--EEEEecCCCCceEEEEECCCCCeEEEe-eCCCcEEEEECCC-CeEE--EEecCCCCee
Q 021399           25 LFSCAKDHTPTVWFADN-GE--RLGTYRGHNGAVWCCDVSRDSMTLITG-SADQTAKLWNVET-GAQL--FTFNFDSPAR   97 (313)
Q Consensus        25 l~s~s~d~~i~iw~~~~-~~--~~~~~~~H~~~V~~~~~~~~~~~l~s~-s~D~~v~vWd~~~-~~~~--~~~~~~~~~~   97 (313)
                      +++...|+.|++|++.+ ++  .+.++.. .+....++++|+++.|+.+ ..++.|.+|+++. ++..  ..........
T Consensus         5 y~~~~~~~~I~~~~~~~~g~l~~~~~~~~-~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~~~~~p~   83 (330)
T PRK11028          5 YIASPESQQIHVWNLNHEGALTLLQVVDV-PGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESPLPGSPT   83 (330)
T ss_pred             EEEcCCCCCEEEEEECCCCceeeeeEEec-CCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeeecCCCCce
Confidence            34446789999999964 33  4455543 3556678999999987655 4689999999973 3322  2222333456


Q ss_pred             EEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEccCCCEEEEe-eCCCeEEEEECC
Q 021399           98 SVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISA-GEDAIVRIWDTE  176 (313)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~t~-~~d~~i~lwd~~  176 (313)
                      .+.+.++++.+++....    ...+.++++..+.  .....+....+ ......+.++|++++++++ ..++.|.+||+.
T Consensus        84 ~i~~~~~g~~l~v~~~~----~~~v~v~~~~~~g--~~~~~~~~~~~-~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~  156 (330)
T PRK11028         84 HISTDHQGRFLFSASYN----ANCVSVSPLDKDG--IPVAPIQIIEG-LEGCHSANIDPDNRTLWVPCLKEDRIRLFTLS  156 (330)
T ss_pred             EEEECCCCCEEEEEEcC----CCeEEEEEECCCC--CCCCceeeccC-CCcccEeEeCCCCCEEEEeeCCCCEEEEEEEC
Confidence            77888877766554321    1222233322110  00111112222 2345667899999888554 567999999997


Q ss_pred             CCceeeec---ccccCceeceEEEEECCCCCEEEEeeC-CCcEEEEECCC--C--cEEEEEec-C------CceeEEEec
Q 021399          177 TGKLLKES---DKETGHKKTITSLAKAADGSHFLTGSL-DKSAKLWDART--L--ELIKTYVT-E------RPVNAVTMS  241 (313)
Q Consensus       177 ~~~~~~~~---~~~~~h~~~v~~~~~s~~~~~l~s~s~-dg~i~iwd~~~--~--~~~~~~~~-~------~~~~~~~~~  241 (313)
                      +...+...   ............++|+|+|++++++.. +++|.+||++.  +  +.+.++.. +      .....+.++
T Consensus       157 ~~g~l~~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~  236 (330)
T PRK11028        157 DDGHLVAQEPAEVTTVEGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHIT  236 (330)
T ss_pred             CCCcccccCCCceecCCCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEEC
Confidence            63322210   000011234678899999999988876 89999999873  3  23333321 1      112358899


Q ss_pred             cCCCEEEEcccccCceeEeeccCCCceeeeeeehhhhhhhccccccccceeEEEECCCCCeeEE
Q 021399          242 PLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKRYGF  305 (313)
Q Consensus       242 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~fspdgk~~~~  305 (313)
                      |+++.++++... .+.+.+++.........+        ++.... ......++|+||||++.-
T Consensus       237 pdg~~lyv~~~~-~~~I~v~~i~~~~~~~~~--------~~~~~~-~~~p~~~~~~~dg~~l~v  290 (330)
T PRK11028        237 PDGRHLYACDRT-ASLISVFSVSEDGSVLSF--------EGHQPT-ETQPRGFNIDHSGKYLIA  290 (330)
T ss_pred             CCCCEEEEecCC-CCeEEEEEEeCCCCeEEE--------eEEEec-cccCCceEECCCCCEEEE
Confidence            999998887432 233444432111111111        011110 123457899999988653

>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]

Probab=99.65  E-value=2.1e-14  Score=113.50  Aligned_cols=243  Identities=17%  Similarity=0.182  Sum_probs=161.1

Q ss_pred             cccccceeEEEEccCCC-----EEEEeeCCCCeEEEeCCC--CcE--EEEe-----cCCCCceEEEEECC-CCCeEEEee
Q 021399            7 KGHERPLTYLKYNKDGD-----LLFSCAKDHTPTVWFADN--GER--LGTY-----RGHNGAVWCCDVSR-DSMTLITGS   71 (313)
Q Consensus         7 ~~h~~~v~~~~fs~~g~-----~l~s~s~d~~i~iw~~~~--~~~--~~~~-----~~H~~~V~~~~~~~-~~~~l~s~s   71 (313)
                      ..|.-+++.+-|.|+.+     +|||++  ..+|+|.+.+  ++.  ...+     ..|..++++..|+. +-+++.++|
T Consensus        93 fd~~YP~tK~~wiPd~~g~~pdlLATs~--D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSS  170 (364)
T KOG0290|consen   93 FDHPYPVTKLMWIPDSKGVYPDLLATSS--DFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSS  170 (364)
T ss_pred             CCCCCCccceEecCCccccCcchhhccc--CeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeec
Confidence            46888899999999863     566544  5789998774  221  1112     34567899999985 557899999


Q ss_pred             CCCcEEEEECCCCeEEEEecCCCCeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEE
Q 021399           72 ADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINR  151 (313)
Q Consensus        72 ~D~~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~  151 (313)
                      -|-|+.|||++++..-                                                 .....+-.|..+|+.
T Consensus       171 iDTTCTiWdie~~~~~-------------------------------------------------~vkTQLIAHDKEV~D  201 (364)
T KOG0290|consen  171 IDTTCTIWDIETGVSG-------------------------------------------------TVKTQLIAHDKEVYD  201 (364)
T ss_pred             ccCeEEEEEEeecccc-------------------------------------------------ceeeEEEecCcceeE
Confidence            9999999999876210                                                 001122346677888


Q ss_pred             EEEccCC-CEEEEeeCCCeEEEEECCCCceeeecccccCc-eeceEEEEECCC-CCEEEEeeCC-CcEEEEECCC-CcEE
Q 021399          152 AVWGPLN-RTIISAGEDAIVRIWDTETGKLLKESDKETGH-KKTITSLAKAAD-GSHFLTGSLD-KSAKLWDART-LELI  226 (313)
Q Consensus       152 ~~~~~~~-~~i~t~~~d~~i~lwd~~~~~~~~~~~~~~~h-~~~v~~~~~s~~-~~~l~s~s~d-g~i~iwd~~~-~~~~  226 (313)
                      ++|...+ +.|++.|.||.+|+||++.... +++...... ......++|.++ -+++|+-..| ..|.|-|+|. ..++
T Consensus       202 Iaf~~~s~~~FASvgaDGSvRmFDLR~leH-STIIYE~p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~tpv  280 (364)
T KOG0290|consen  202 IAFLKGSRDVFASVGADGSVRMFDLRSLEH-STIIYEDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPCTPV  280 (364)
T ss_pred             EEeccCccceEEEecCCCcEEEEEeccccc-ceEEecCCCCCCcceeeccCcCCchHHhhhhcCCceEEEEEecCCCcce
Confidence            8887644 5789999999999999986543 233332233 456778888764 4566665554 4589999987 3455


Q ss_pred             EEEe-cCCceeEEEeccCCCEEEEcccccCceeEeeccCCCceeeeeeehhhhhhhccccccccceeEEEECC-CCCeeE
Q 021399          227 KTYV-TERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNP-DGKRYG  304 (313)
Q Consensus       227 ~~~~-~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~fsp-dgk~~~  304 (313)
                      ..+. +..+++.++|.|.....+.++|+| ..+.+||....-.+ ...|+     +-... -.+.|+.|.|+| .+..+|
T Consensus       281 a~L~~H~a~VNgIaWaPhS~~hictaGDD-~qaliWDl~q~~~~-~~~dP-----ilay~-a~~EVNqi~Ws~~~~Dwia  352 (364)
T KOG0290|consen  281 ARLRNHQASVNGIAWAPHSSSHICTAGDD-CQALIWDLQQMPRE-NGEDP-----ILAYT-AGGEVNQIQWSSSQPDWIA  352 (364)
T ss_pred             ehhhcCcccccceEecCCCCceeeecCCc-ceEEEEeccccccc-CCCCc-----hhhhh-ccceeeeeeecccCCCEEE
Confidence            6654 567899999999987777776655 44455554332110 01111     11111 367899999995 477899


Q ss_pred             EEEEE
Q 021399          305 FLLLQ  309 (313)
Q Consensus       305 ~~~~~  309 (313)
                      +|+.+
T Consensus       353 i~~~k  357 (364)
T KOG0290|consen  353 ICFGK  357 (364)
T ss_pred             EEecC
Confidence            88754

>KOG1188 consensus WD40 repeat protein [General function prediction only]

Probab=99.63  E-value=1.5e-14  Score=116.59  Aligned_cols=201  Identities=11%  Similarity=0.177  Sum_probs=137.5

Q ss_pred             CEEEEeeCCCCeEEEeCCCCcEEEEecCCCCceEEEEECC--CCCeEEEeeCCCcEEEEECCCCeEEEEec--CCC--Ce
Q 021399           23 DLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSR--DSMTLITGSADQTAKLWNVETGAQLFTFN--FDS--PA   96 (313)
Q Consensus        23 ~~l~s~s~d~~i~iw~~~~~~~~~~~~~H~~~V~~~~~~~--~~~~l~s~s~D~~v~vWd~~~~~~~~~~~--~~~--~~   96 (313)
                      ..++++-..|.|++||..++..+..|++|...+..+.|..  ....+.||+.||+||+||+++....-.+.  ..+  +.
T Consensus        41 ~~vav~lSngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f  120 (376)
T KOG1188|consen   41 TAVAVSLSNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPF  120 (376)
T ss_pred             eeEEEEecCCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcc
Confidence            3477788899999999999999999999999999998865  45689999999999999998865443222  222  33


Q ss_pred             eEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceE-EEecCCCCceEEEEEccCC-CEEEEeeCCCeEEEEE
Q 021399           97 RSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESV-LILKGPQGRINRAVWGPLN-RTIISAGEDAIVRIWD  174 (313)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~i~~~~~~~~~-~~i~t~~~d~~i~lwd  174 (313)
                      .+++......+.+..+... .......+|++...     .+++ .-.+.|...|+++.|+|.. +.+++|+-||.|.|+|
T Consensus       121 ~~ld~nck~~ii~~GtE~~-~s~A~v~lwDvR~~-----qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD  194 (376)
T KOG1188|consen  121 ICLDLNCKKNIIACGTELT-RSDASVVLWDVRSE-----QQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFD  194 (376)
T ss_pred             eEeeccCcCCeEEeccccc-cCceEEEEEEeccc-----cchhhhhhhhccCcceeEEecCCCCCeEEeecccceEEeee
Confidence            4444332333333332211 11122233333211     1112 2346788999999999975 6789999999999999


Q ss_pred             CCCCceeeecccccCceeceEEEEECCCC-CEEEEeeCCCcEEEEECCCCcEEEEE
Q 021399          175 TETGKLLKESDKETGHKKTITSLAKAADG-SHFLTGSLDKSAKLWDARTLELIKTY  229 (313)
Q Consensus       175 ~~~~~~~~~~~~~~~h~~~v~~~~~s~~~-~~l~s~s~dg~i~iwd~~~~~~~~~~  229 (313)
                      ++....--.+...-.|...|.++.|..++ +.|.+-+..++..+|+++.+.+...+
T Consensus       195 ~~~d~EeDaL~~viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~~~~  250 (376)
T KOG1188|consen  195 TKKDNEEDALLHVINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSEETWL  250 (376)
T ss_pred             cCCCcchhhHHHhhcccceeeeeeeecCCcceEEEEEccCceeEEEccCCChhhcc
Confidence            87543211111112366779999998876 45899999999999999988765443

>PRK02889 tolB translocation protein TolB; Provisional

Probab=99.63  E-value=9.7e-14  Score=123.05  Aligned_cols=224  Identities=15%  Similarity=0.107  Sum_probs=139.6

Q ss_pred             cccccccccceeEEEEccCCCEEEEeeCC---CCeEEEeCCCCcEEEEecCCCCceEEEEECCCCCeEE-EeeCCCcEEE
Q 021399            3 PILMKGHERPLTYLKYNKDGDLLFSCAKD---HTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLI-TGSADQTAKL   78 (313)
Q Consensus         3 ~~~l~~h~~~v~~~~fs~~g~~l~s~s~d---~~i~iw~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~-s~s~D~~v~v   78 (313)
                      ++.+..+...+.+.+|+|||+.|+..+.+   ..|.+||+.+++.. .+....+.+.+.+|+|||+.++ +.+.++...|
T Consensus       188 ~~~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~-~l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~I  266 (427)
T PRK02889        188 AQSALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRR-VVANFKGSNSAPAWSPDGRTLAVALSRDGNSQI  266 (427)
T ss_pred             ceEeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEE-EeecCCCCccceEECCCCCEEEEEEccCCCceE
Confidence            34556777889999999999999887743   35899999888653 3344445667889999998765 6677888777


Q ss_pred             EECC--CCeEEEEecCCCCeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEcc
Q 021399           79 WNVE--TGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGP  156 (313)
Q Consensus        79 Wd~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~  156 (313)
                      |.++  ++...                                                     .+..+.+......|+|
T Consensus       267 y~~d~~~~~~~-----------------------------------------------------~lt~~~~~~~~~~wSp  293 (427)
T PRK02889        267 YTVNADGSGLR-----------------------------------------------------RLTQSSGIDTEPFFSP  293 (427)
T ss_pred             EEEECCCCCcE-----------------------------------------------------ECCCCCCCCcCeEEcC
Confidence            7643  21110                                                     0011112233467999


Q ss_pred             CCCEEEEeeC-CCeEEEEE--CCCCceeeecccccCceeceEEEEECCCCCEEEEeeCCC---cEEEEECCCCcEEEEEe
Q 021399          157 LNRTIISAGE-DAIVRIWD--TETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDK---SAKLWDARTLELIKTYV  230 (313)
Q Consensus       157 ~~~~i~t~~~-d~~i~lwd--~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~dg---~i~iwd~~~~~~~~~~~  230 (313)
                      +|+.++..+. ++...||.  ...+.. ..+..   +.......+|+|||++|+..+.++   .|.+||+.+++.. .+.
T Consensus       294 DG~~l~f~s~~~g~~~Iy~~~~~~g~~-~~lt~---~g~~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~~-~lt  368 (427)
T PRK02889        294 DGRSIYFTSDRGGAPQIYRMPASGGAA-QRVTF---TGSYNTSPRISPDGKLLAYISRVGGAFKLYVQDLATGQVT-ALT  368 (427)
T ss_pred             CCCEEEEEecCCCCcEEEEEECCCCce-EEEec---CCCCcCceEECCCCCEEEEEEccCCcEEEEEEECCCCCeE-Ecc
Confidence            9998876554 45555664  444432 22211   112234578999999998877654   5999999987753 333


Q ss_pred             cCCceeEEEeccCCCEEEEcccccCc-eeEeeccCCCceeeeeeehhhhhhhccccccccceeEEEECC
Q 021399          231 TERPVNAVTMSPLLDHVVLGGGQDAS-AVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNP  298 (313)
Q Consensus       231 ~~~~~~~~~~~p~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~fsp  298 (313)
                      ........+|+|++..++.+....+. .++..+.             .++....+..+.+.+...+|+|
T Consensus       369 ~~~~~~~p~~spdg~~l~~~~~~~g~~~l~~~~~-------------~g~~~~~l~~~~g~~~~p~wsp  424 (427)
T PRK02889        369 DTTRDESPSFAPNGRYILYATQQGGRSVLAAVSS-------------DGRIKQRLSVQGGDVREPSWGP  424 (427)
T ss_pred             CCCCccCceECCCCCEEEEEEecCCCEEEEEEEC-------------CCCceEEeecCCCCCCCCccCC
Confidence            33334678999999998876543322 1222222             1222222334556777778877

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=99.63  E-value=1.9e-12  Score=111.27  Aligned_cols=237  Identities=9%  Similarity=0.096  Sum_probs=143.6

Q ss_pred             cceeEEEEccCCCEEEEee-CCCCeEEEeCC-CCcE--EEEecCCCCceEEEEECCCCCeEEEee-CCCcEEEEECCCCe
Q 021399           11 RPLTYLKYNKDGDLLFSCA-KDHTPTVWFAD-NGER--LGTYRGHNGAVWCCDVSRDSMTLITGS-ADQTAKLWNVETGA   85 (313)
Q Consensus        11 ~~v~~~~fs~~g~~l~s~s-~d~~i~iw~~~-~~~~--~~~~~~H~~~V~~~~~~~~~~~l~s~s-~D~~v~vWd~~~~~   85 (313)
                      +.+..++++|++++|+.++ .++.|.+|+++ +++.  +.+.. ..+....++++|+++.+++++ .++.|.+|++++..
T Consensus        35 ~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~-~~~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g  113 (330)
T PRK11028         35 GQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESP-LPGSPTHISTDHQGRFLFSASYNANCVSVSPLDKDG  113 (330)
T ss_pred             CCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeeec-CCCCceEEEECCCCCEEEEEEcCCCeEEEEEECCCC
Confidence            4567899999999987764 58889999986 3432  22222 233456799999999888776 48999999996421


Q ss_pred             ----EEEEecCCCCeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCC-CCceEEEecCCCCceEEEEEccCCCE
Q 021399           86 ----QLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQ-GGESVLILKGPQGRINRAVWGPLNRT  160 (313)
Q Consensus        86 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~~~~~~~~~~~  160 (313)
                          .+...........+.+.|+++.+++....    ...+.++++....... .......... ......+.|+|++++
T Consensus       114 ~~~~~~~~~~~~~~~~~~~~~p~g~~l~v~~~~----~~~v~v~d~~~~g~l~~~~~~~~~~~~-g~~p~~~~~~pdg~~  188 (330)
T PRK11028        114 IPVAPIQIIEGLEGCHSANIDPDNRTLWVPCLK----EDRIRLFTLSDDGHLVAQEPAEVTTVE-GAGPRHMVFHPNQQY  188 (330)
T ss_pred             CCCCceeeccCCCcccEeEeCCCCCEEEEeeCC----CCEEEEEEECCCCcccccCCCceecCC-CCCCceEEECCCCCE
Confidence                22222222345566778876665543321    1223333332110000 0000001111 123457899999999


Q ss_pred             EEEeeC-CCeEEEEECCC--Cc--eeeeccccc---CceeceEEEEECCCCCEEEEeeC-CCcEEEEECCCCc----EEE
Q 021399          161 IISAGE-DAIVRIWDTET--GK--LLKESDKET---GHKKTITSLAKAADGSHFLTGSL-DKSAKLWDARTLE----LIK  227 (313)
Q Consensus       161 i~t~~~-d~~i~lwd~~~--~~--~~~~~~~~~---~h~~~v~~~~~s~~~~~l~s~s~-dg~i~iwd~~~~~----~~~  227 (313)
                      ++++.+ ++.|.+||+..  ++  .+..+....   .+......+.++|++++++++.. ++.|.+|+++...    .+.
T Consensus       189 lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~~~~~~~  268 (330)
T PRK11028        189 AYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRHLYACDRTASLISVFSVSEDGSVLSFEG  268 (330)
T ss_pred             EEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCEEEEecCCCCeEEEEEEeCCCCeEEEeE
Confidence            877765 89999999863  22  222221111   11223346889999999988864 7899999985432    233


Q ss_pred             EEecCCceeEEEeccCCCEEEEcccc
Q 021399          228 TYVTERPVNAVTMSPLLDHVVLGGGQ  253 (313)
Q Consensus       228 ~~~~~~~~~~~~~~p~~~~~~~~~~~  253 (313)
                      .+........++++|++..++++...
T Consensus       269 ~~~~~~~p~~~~~~~dg~~l~va~~~  294 (330)
T PRK11028        269 HQPTETQPRGFNIDHSGKYLIAAGQK  294 (330)
T ss_pred             EEeccccCCceEECCCCCEEEEEEcc
Confidence            33333345678999999999987643

>KOG0649 consensus WD40 repeat protein [General function prediction only]

Probab=99.63  E-value=2e-13  Score=105.52  Aligned_cols=158  Identities=11%  Similarity=0.161  Sum_probs=113.8

Q ss_pred             ceeEEEEccCCCEEEEeeCCCCeEEEeCCCCcEEEEecCCCCceEEEEECCCCCeEEEeeCCCcEEEEECCCCeEEEEec
Q 021399           12 PLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFN   91 (313)
Q Consensus        12 ~v~~~~fs~~g~~l~s~s~d~~i~iw~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~v~vWd~~~~~~~~~~~   91 (313)
                      .|+++-..|...-++.++.|+.++-||+++|+...+++||++.|.++.-...+..++||+.||++|+||.++++.+..+.
T Consensus       116 eINam~ldP~enSi~~AgGD~~~y~~dlE~G~i~r~~rGHtDYvH~vv~R~~~~qilsG~EDGtvRvWd~kt~k~v~~ie  195 (325)
T KOG0649|consen  116 EINAMWLDPSENSILFAGGDGVIYQVDLEDGRIQREYRGHTDYVHSVVGRNANGQILSGAEDGTVRVWDTKTQKHVSMIE  195 (325)
T ss_pred             ccceeEeccCCCcEEEecCCeEEEEEEecCCEEEEEEcCCcceeeeeeecccCcceeecCCCccEEEEeccccceeEEec
Confidence            47788899988888888899999999999999999999999999999874444468899999999999999998876653


Q ss_pred             CCCCeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCC-CCceEEEEEccCCCEEEEeeCCCeE
Q 021399           92 FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGP-QGRINRAVWGPLNRTIISAGEDAIV  170 (313)
Q Consensus        92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~~~~~~~i~t~~~d~~i  170 (313)
                      .-.....+                                           .-| ...|..++.+  +..++ ||....+
T Consensus       196 ~yk~~~~l-------------------------------------------Rp~~g~wigala~~--edWlv-CGgGp~l  229 (325)
T KOG0649|consen  196 PYKNPNLL-------------------------------------------RPDWGKWIGALAVN--EDWLV-CGGGPKL  229 (325)
T ss_pred             cccChhhc-------------------------------------------CcccCceeEEEecc--CceEE-ecCCCce
Confidence            21110000                                           000 1112233222  23455 5556789


Q ss_pred             EEEECCCCceeeecccccCceeceEEEEECCCCCEEEEeeCCCcEEEEECC
Q 021399          171 RIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDAR  221 (313)
Q Consensus       171 ~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~dg~i~iwd~~  221 (313)
                      .||.+++.++.+.+.    ....+..+.|.  .+.+++++..+.+.-|.+.
T Consensus       230 slwhLrsse~t~vfp----ipa~v~~v~F~--~d~vl~~G~g~~v~~~~l~  274 (325)
T KOG0649|consen  230 SLWHLRSSESTCVFP----IPARVHLVDFV--DDCVLIGGEGNHVQSYTLN  274 (325)
T ss_pred             eEEeccCCCceEEEe----cccceeEeeee--cceEEEeccccceeeeeec
Confidence            999999888766553    34456666665  3568888888888888774

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=99.63  E-value=1.4e-13  Score=108.21  Aligned_cols=154  Identities=20%  Similarity=0.369  Sum_probs=107.3

Q ss_pred             EEEEccCCCEEEEeeC---C-------CCeEEEeCC-CCcEEEEecC-CCCceEEEEECCCCCeEEE--eeCCCcEEEEE
Q 021399           15 YLKYNKDGDLLFSCAK---D-------HTPTVWFAD-NGERLGTYRG-HNGAVWCCDVSRDSMTLIT--GSADQTAKLWN   80 (313)
Q Consensus        15 ~~~fs~~g~~l~s~s~---d-------~~i~iw~~~-~~~~~~~~~~-H~~~V~~~~~~~~~~~l~s--~s~D~~v~vWd   80 (313)
                      .+.|+|+|++|+.-..   |       +...+|.++ .+.....+.- ..++|.+++|+|+|+.|+.  |..++.|.+||
T Consensus        10 ~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~lyd   89 (194)
T PF08662_consen   10 KLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTLYD   89 (194)
T ss_pred             EEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEEEc
Confidence            4789999987776433   2       234455442 2223333332 3457999999999987654  44678999999


Q ss_pred             CCCCeEEEEecCCCCeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEccCCCE
Q 021399           81 VETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRT  160 (313)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~  160 (313)
                      ++ ++.+..+                                                      +...++.+.|+|.|++
T Consensus        90 ~~-~~~i~~~------------------------------------------------------~~~~~n~i~wsP~G~~  114 (194)
T PF08662_consen   90 VK-GKKIFSF------------------------------------------------------GTQPRNTISWSPDGRF  114 (194)
T ss_pred             Cc-ccEeEee------------------------------------------------------cCCCceEEEECCCCCE
Confidence            85 2222111                                                      1235567889999999


Q ss_pred             EEEeeCC---CeEEEEECCCCceeeecccccCceeceEEEEECCCCCEEEEeeC------CCcEEEEECCCCcEEEEE
Q 021399          161 IISAGED---AIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSL------DKSAKLWDARTLELIKTY  229 (313)
Q Consensus       161 i~t~~~d---~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~------dg~i~iwd~~~~~~~~~~  229 (313)
                      +++++.+   |.|.+||.++.+.+....     ...+..++|+|||.+|++++.      |+.++||+.. |+.+...
T Consensus       115 l~~~g~~n~~G~l~~wd~~~~~~i~~~~-----~~~~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~~-G~~l~~~  186 (194)
T PF08662_consen  115 LVLAGFGNLNGDLEFWDVRKKKKISTFE-----HSDATDVEWSPDGRYLATATTSPRLRVDNGFKIWSFQ-GRLLYKK  186 (194)
T ss_pred             EEEEEccCCCcEEEEEECCCCEEeeccc-----cCcEEEEEEcCCCCEEEEEEeccceeccccEEEEEec-CeEeEec
Confidence            9998744   669999999877776543     235789999999999999874      7889999985 5555543

>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]

Probab=99.62  E-value=1.7e-13  Score=109.98  Aligned_cols=267  Identities=19%  Similarity=0.266  Sum_probs=170.0

Q ss_pred             ceeEEEEccCCCEEEEeeCCCCeEEEeCCCCc-------E-----EEEecCC-CCceEEEEE-------CCCCCeEEEee
Q 021399           12 PLTYLKYNKDGDLLFSCAKDHTPTVWFADNGE-------R-----LGTYRGH-NGAVWCCDV-------SRDSMTLITGS   71 (313)
Q Consensus        12 ~v~~~~fs~~g~~l~s~s~d~~i~iw~~~~~~-------~-----~~~~~~H-~~~V~~~~~-------~~~~~~l~s~s   71 (313)
                      ....+.|||||..|++-+.|..+++|++...-       .     .-+++=- ..-|...+|       .|+..++++.+
T Consensus        51 f~kgckWSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~a~ss  130 (406)
T KOG2919|consen   51 FLKGCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLFAVSS  130 (406)
T ss_pred             hhccceeCCCCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCccceeeecc
Confidence            34568999999999999999999999765210       0     0111111 123555555       36778999999


Q ss_pred             CCCcEEEEECCCCeEEEEecC-C-----CCeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEec--
Q 021399           72 ADQTAKLWNVETGAQLFTFNF-D-----SPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILK--  143 (313)
Q Consensus        72 ~D~~v~vWd~~~~~~~~~~~~-~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--  143 (313)
                      +|.-|++||..+++....+.. +     ....++.|++++..+.+.-...+.      +-++.+.   .....++...  
T Consensus       131 r~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaGykrcir------vFdt~Rp---Gr~c~vy~t~~~  201 (406)
T KOG2919|consen  131 RDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAGYKRCIR------VFDTSRP---GRDCPVYTTVTK  201 (406)
T ss_pred             ccCceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEeecccceEE------EeeccCC---CCCCcchhhhhc
Confidence            999999999999988766532 1     356788899866554443322222      1111110   0111122111  


Q ss_pred             ---CCCCceEEEEEccCCC-EEEEeeCCCeEEEEECCCCceeeecccccCceeceEEEEECCCCCEEEEeeC-CCcEEEE
Q 021399          144 ---GPQGRINRAVWGPLNR-TIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSL-DKSAKLW  218 (313)
Q Consensus       144 ---~~~~~i~~~~~~~~~~-~i~t~~~d~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~-dg~i~iw  218 (313)
                         +-.+-|.+.+++|... .++.++....+-|+.-..+.++....   +|.+.|+.+.|.++|+.|.+|.. |-.|..|
T Consensus       202 ~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llg---gh~gGvThL~~~edGn~lfsGaRk~dkIl~W  278 (406)
T KOG2919|consen  202 GKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLG---GHGGGVTHLQWCEDGNKLFSGARKDDKILCW  278 (406)
T ss_pred             ccccccceeeeeeccCCCCcceeeecccceeeeEecCCCCceeeec---ccCCCeeeEEeccCcCeecccccCCCeEEEE
Confidence               2245677889999865 78888888887777766666665543   79999999999999999999986 7889999


Q ss_pred             ECCC-CcEEEEEecCC--ceeEEE--eccCCCEEEEcccccCceeEeeccCCCceeeeeeehhh-hhhhcccccccccee
Q 021399          219 DART-LELIKTYVTER--PVNAVT--MSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKIL-QEEIGGVKGHFGPIN  292 (313)
Q Consensus       219 d~~~-~~~~~~~~~~~--~~~~~~--~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~h~~~V~  292 (313)
                      |+|. ..++..+..+.  .-..+-  ..|.++.++ +|+ ..+.|            +.||... +..+..+..|+..|+
T Consensus       279 DiR~~~~pv~~L~rhv~~TNQRI~FDld~~~~~La-sG~-tdG~V------------~vwdlk~~gn~~sv~~~~sd~vN  344 (406)
T KOG2919|consen  279 DIRYSRDPVYALERHVGDTNQRILFDLDPKGEILA-SGD-TDGSV------------RVWDLKDLGNEVSVTGNYSDTVN  344 (406)
T ss_pred             eehhccchhhhhhhhccCccceEEEecCCCCceee-ccC-CCccE------------EEEecCCCCCccccccccccccc
Confidence            9986 33444432111  011223  346555433 333 33344            4455433 444556677899999


Q ss_pred             EEEECCCCCeeE
Q 021399          293 ALAFNPDGKRYG  304 (313)
Q Consensus       293 ~~~fspdgk~~~  304 (313)
                      .++++|-=-++|
T Consensus       345 gvslnP~mpila  356 (406)
T KOG2919|consen  345 GVSLNPIMPILA  356 (406)
T ss_pred             ceecCcccceee
Confidence            999999743333

>PRK05137 tolB translocation protein TolB; Provisional

Probab=99.62  E-value=3.7e-13  Score=119.82  Aligned_cols=191  Identities=7%  Similarity=0.021  Sum_probs=130.8

Q ss_pred             cccccccccceeEEEEccCCCEEEEeeC---CCCeEEEeCCCCcEEEEecCCCCceEEEEECCCCCeE-EEeeCCCc--E
Q 021399            3 PILMKGHERPLTYLKYNKDGDLLFSCAK---DHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTL-ITGSADQT--A   76 (313)
Q Consensus         3 ~~~l~~h~~~v~~~~fs~~g~~l~s~s~---d~~i~iw~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l-~s~s~D~~--v   76 (313)
                      ++.+..|...+.+.+|+|||+.|+..+.   +..|.+||+.+++.. .+..+.+.+.+.+|+|||+.+ ++.+.++.  |
T Consensus       194 ~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~-~l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~I  272 (435)
T PRK05137        194 VRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRE-LVGNFPGMTFAPRFSPDGRKVVMSLSQGGNTDI  272 (435)
T ss_pred             cEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEE-EeecCCCcccCcEECCCCCEEEEEEecCCCceE
Confidence            4567778889999999999999988764   467999999888653 455667778889999999865 46666665  5


Q ss_pred             EEEECCCCeEEEEecCCCCeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEcc
Q 021399           77 KLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGP  156 (313)
Q Consensus        77 ~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~  156 (313)
                      .+||+.+++....                                                     ..+.+......|+|
T Consensus       273 y~~d~~~~~~~~L-----------------------------------------------------t~~~~~~~~~~~sp  299 (435)
T PRK05137        273 YTMDLRSGTTTRL-----------------------------------------------------TDSPAIDTSPSYSP  299 (435)
T ss_pred             EEEECCCCceEEc-----------------------------------------------------cCCCCccCceeEcC
Confidence            5557665533210                                                     00111223467899


Q ss_pred             CCCEEEEeeC-C--CeEEEEECCCCceeeecccccCceeceEEEEECCCCCEEEEeeCC---CcEEEEECCCCcEEEEEe
Q 021399          157 LNRTIISAGE-D--AIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLD---KSAKLWDARTLELIKTYV  230 (313)
Q Consensus       157 ~~~~i~t~~~-d--~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d---g~i~iwd~~~~~~~~~~~  230 (313)
                      +++.++..+. +  ..|++||+..+.. +.+..   +...+....|+|||+.|+..+.+   ..|.+||+.++.. +.+.
T Consensus       300 DG~~i~f~s~~~g~~~Iy~~d~~g~~~-~~lt~---~~~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~~-~~lt  374 (435)
T PRK05137        300 DGSQIVFESDRSGSPQLYVMNADGSNP-RRISF---GGGRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSGE-RILT  374 (435)
T ss_pred             CCCEEEEEECCCCCCeEEEEECCCCCe-EEeec---CCCcccCeEECCCCCEEEEEEcCCCceEEEEEECCCCce-Eecc
Confidence            9988887663 2  3688889876543 33321   23445667899999999877653   3588889865543 4444


Q ss_pred             cCCceeEEEeccCCCEEEEccc
Q 021399          231 TERPVNAVTMSPLLDHVVLGGG  252 (313)
Q Consensus       231 ~~~~~~~~~~~p~~~~~~~~~~  252 (313)
                      ........+|+|+++.++.+..
T Consensus       375 ~~~~~~~p~~spDG~~i~~~~~  396 (435)
T PRK05137        375 SGFLVEGPTWAPNGRVIMFFRQ  396 (435)
T ss_pred             CCCCCCCCeECCCCCEEEEEEc
Confidence            4445677899999998877643

>PRK01742 tolB translocation protein TolB; Provisional

Probab=99.62  E-value=4.6e-14  Score=125.22  Aligned_cols=201  Identities=15%  Similarity=0.101  Sum_probs=128.1

Q ss_pred             CCCeEEEeCCCCcEEEEecCCCCceEEEEECCCCCeEEEeeCC---CcEEEEECCCCeEEEEecCCCCeeEEEeecCCeE
Q 021399           31 DHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSAD---QTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKL  107 (313)
Q Consensus        31 d~~i~iw~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D---~~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~  107 (313)
                      +..|.+||.+... ...+..|...+.+..|+|||+.++..+.+   ..|++||+.+++......                
T Consensus       183 ~~~i~i~d~dg~~-~~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~----------------  245 (429)
T PRK01742        183 PYEVRVADYDGFN-QFIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVAS----------------  245 (429)
T ss_pred             eEEEEEECCCCCC-ceEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEec----------------
Confidence            5789999976544 55677888899999999999988887654   469999988764321100                


Q ss_pred             EEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEccCCCEEEEee-CCCeEEE--EECCCCceeeec
Q 021399          108 AVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAG-EDAIVRI--WDTETGKLLKES  184 (313)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~t~~-~d~~i~l--wd~~~~~~~~~~  184 (313)
                                                        +.++   .....|+|+++.|+.+. .++.+.|  ||+.++.. ..+
T Consensus       246 ----------------------------------~~g~---~~~~~wSPDG~~La~~~~~~g~~~Iy~~d~~~~~~-~~l  287 (429)
T PRK01742        246 ----------------------------------FRGH---NGAPAFSPDGSRLAFASSKDGVLNIYVMGANGGTP-SQL  287 (429)
T ss_pred             ----------------------------------CCCc---cCceeECCCCCEEEEEEecCCcEEEEEEECCCCCe-Eee
Confidence                                              0111   12467999999888764 5776554  56665543 333


Q ss_pred             ccccCceeceEEEEECCCCCEEEEee-CCCcEEEEECCCC-cEEEEEecCCceeEEEeccCCCEEEEcccccCceeEeec
Q 021399          185 DKETGHKKTITSLAKAADGSHFLTGS-LDKSAKLWDARTL-ELIKTYVTERPVNAVTMSPLLDHVVLGGGQDASAVTTTD  262 (313)
Q Consensus       185 ~~~~~h~~~v~~~~~s~~~~~l~s~s-~dg~i~iwd~~~~-~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~  262 (313)
                      .   .+...+.+.+|+|||+.|+..+ .+|...||+++.. .....+....  ...+|+|+++.+++++. +  .+..+|
T Consensus       288 t---~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l~~~~--~~~~~SpDG~~ia~~~~-~--~i~~~D  359 (429)
T PRK01742        288 T---SGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASLVGGRG--YSAQISADGKTLVMING-D--NVVKQD  359 (429)
T ss_pred             c---cCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEEecCCC--CCccCCCCCCEEEEEcC-C--CEEEEE
Confidence            2   3556678899999999877655 5788888876432 2222222222  45789999998877654 2  133344


Q ss_pred             cCCCceeeeeeehhhhhhhccccccccceeEEEECCCCCeeEEEEE
Q 021399          263 HRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKRYGFLLL  308 (313)
Q Consensus       263 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~fspdgk~~~~~~~  308 (313)
                      ...+.... +           ...+  .....+|+|||+.++|...
T Consensus       360 l~~g~~~~-l-----------t~~~--~~~~~~~sPdG~~i~~~s~  391 (429)
T PRK01742        360 LTSGSTEV-L-----------SSTF--LDESPSISPNGIMIIYSST  391 (429)
T ss_pred             CCCCCeEE-e-----------cCCC--CCCCceECCCCCEEEEEEc
Confidence            43332211 0           0111  2346789999999988654

>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]

Probab=99.61  E-value=1.1e-13  Score=123.08  Aligned_cols=257  Identities=14%  Similarity=0.101  Sum_probs=162.6

Q ss_pred             cccccccccceeEEEEccCC-CEEEEeeCCCCeEEEeCCCCcE--EEE----ecCCCCceEEEEECCC--CCeEEEeeCC
Q 021399            3 PILMKGHERPLTYLKYNKDG-DLLFSCAKDHTPTVWFADNGER--LGT----YRGHNGAVWCCDVSRD--SMTLITGSAD   73 (313)
Q Consensus         3 ~~~l~~h~~~v~~~~fs~~g-~~l~s~s~d~~i~iw~~~~~~~--~~~----~~~H~~~V~~~~~~~~--~~~l~s~s~D   73 (313)
                      |-....-..+|.|+.|+|.. .+++.|..+|.|-+||+..+..  ...    ...|..+|+.+.|-.+  +.-|+|+|.|
T Consensus       235 Pe~~~~~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~~~~~~~f~s~ssD  314 (555)
T KOG1587|consen  235 PELVLESPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQNEHNTEFFSLSSD  314 (555)
T ss_pred             ceEEEecCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEeccCCCCceEEEecC
Confidence            34344445679999999975 5667777899999999987654  222    2358889999998643  3569999999


Q ss_pred             CcEEEEECCCCeE-EEEecCCCCeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEE
Q 021399           74 QTAKLWNVETGAQ-LFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRA  152 (313)
Q Consensus        74 ~~v~vWd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~  152 (313)
                      |.|..|+++.-.. .........                          .+       ....        ....-.+..+
T Consensus       315 G~i~~W~~~~l~~P~e~~~~~~~--------------------------~~-------~~~~--------~~~~~~~t~~  353 (555)
T KOG1587|consen  315 GSICSWDTDMLSLPVEGLLLESK--------------------------KH-------KGQQ--------SSKAVGATSL  353 (555)
T ss_pred             CcEeeeeccccccchhhcccccc--------------------------cc-------cccc--------cccccceeeE
Confidence            9999997653211 000000000                          00       0000        0001134455


Q ss_pred             EEccCC-CEEEEeeCCCeEEEEECCCCce-e----eecccccCceeceEEEEECCCCCEEEEeeCCCcEEEEECC-CCcE
Q 021399          153 VWGPLN-RTIISAGEDAIVRIWDTETGKL-L----KESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDAR-TLEL  225 (313)
Q Consensus       153 ~~~~~~-~~i~t~~~d~~i~lwd~~~~~~-~----~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~dg~i~iwd~~-~~~~  225 (313)
                      .|.+.. ..|+.|+++|.|.--+....+. .    ........|.+.|+++.++|-+..++..+.|-+++||... ...+
T Consensus       354 ~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~gDW~vriWs~~~~~~P  433 (555)
T KOG1587|consen  354 KFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVGDWTVRIWSEDVIASP  433 (555)
T ss_pred             eeccCCCceEEEEcCCcEEEEEeccCCcccccccccccccccccCcceEeeecCCCccceeeeeccceeEeccccCCCCc
Confidence            565443 4688899999988744332211 1    1122334688999999999987776666669999999887 5566


Q ss_pred             EEEEec-CCceeEEEeccCCCEEEEcccccCceeEeeccCCCceeeeeeehhhhhhhccccccccceeEEEECCCCCeeE
Q 021399          226 IKTYVT-ERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKRYG  304 (313)
Q Consensus       226 ~~~~~~-~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~fspdgk~~~  304 (313)
                      +..+.. ...+.+++|+|....+++++..++ .+.+||.+.          ....++...+-+..+.+.+.|+++|+.+|
T Consensus       434 l~~~~~~~~~v~~vaWSptrpavF~~~d~~G-~l~iWDLl~----------~~~~Pv~s~~~~~~~l~~~~~s~~g~~la  502 (555)
T KOG1587|consen  434 LLSLDSSPDYVTDVAWSPTRPAVFATVDGDG-NLDIWDLLQ----------DDEEPVLSQKVCSPALTRVRWSPNGKLLA  502 (555)
T ss_pred             chhhhhccceeeeeEEcCcCceEEEEEcCCC-ceehhhhhc----------cccCCcccccccccccceeecCCCCcEEE
Confidence            665543 334899999999998887765443 333344322          12223333333466778889999999988


Q ss_pred             EEEEEEe
Q 021399          305 FLLLQIN  311 (313)
Q Consensus       305 ~~~~~~~  311 (313)
                      .=++.++
T Consensus       503 vGd~~G~  509 (555)
T KOG1587|consen  503 VGDANGT  509 (555)
T ss_pred             EecCCCc
Confidence            7666554

>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]

Probab=99.61  E-value=3.9e-13  Score=108.23  Aligned_cols=276  Identities=17%  Similarity=0.239  Sum_probs=178.8

Q ss_pred             eeEEEEccCCCEEEE-eeCCCCeEEEeCCCCcEEEEecCCCCceEEEEECCCCC-eEEEeeCCCcEEEEECCCCeEEEEe
Q 021399           13 LTYLKYNKDGDLLFS-CAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSM-TLITGSADQTAKLWNVETGAQLFTF   90 (313)
Q Consensus        13 v~~~~fs~~g~~l~s-~s~d~~i~iw~~~~~~~~~~~~~H~~~V~~~~~~~~~~-~l~s~s~D~~v~vWd~~~~~~~~~~   90 (313)
                      |.-+.|..|..+++. ...|+.|.+|++...+-...+..-...+.+++|||||+ .|.+..-|-.|.+|++.+.+.....
T Consensus        51 i~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew~ckIdeg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~~~  130 (447)
T KOG4497|consen   51 IVYIEWKADSCHILCVAYKDPKVQVWSLVQPEWYCKIDEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYLLP  130 (447)
T ss_pred             hhheeeeccceeeeeeeeccceEEEEEeecceeEEEeccCCCcceeeeECCCcceEeeeecceeEEEEEEeccceeEEec
Confidence            445667767665554 46788999999998887777777788899999999995 6677778999999999887765544


Q ss_pred             cCCCCeeEEEeecCCeEEEEECCC----ceecc--------cc-----ceeeeeeeCCCCCCCceEEEecC---------
Q 021399           91 NFDSPARSVDFAVGDKLAVITTDP----FMELN--------SA-----IHVKRIARDPADQGGESVLILKG---------  144 (313)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~--------~~-----~~~~~~~~~~~~~~~~~~~~~~~---------  144 (313)
                      -.......++|.+++++++..+..    +.++.        ..     ...-.+.+.+   .+..+.+++.         
T Consensus       131 ~pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~DltgieWsP---dg~~laVwd~~Leykv~aY  207 (447)
T KOG4497|consen  131 HPKTNVKGYAFHPDGQFCAILSRRDCKDYVQISSCKAWILLKEFKLDTIDLTGIEWSP---DGNWLAVWDNVLEYKVYAY  207 (447)
T ss_pred             ccccCceeEEECCCCceeeeeecccHHHHHHHHhhHHHHHHHhcCCCcccccCceECC---CCcEEEEecchhhheeeee
Confidence            334455778899998888776431    11100        00     0011111111   1222222221         


Q ss_pred             CC-CceEEEEEccCCCEEEEeeCCCeEEEEECCCCceeeecccc---------------------------------cC-
Q 021399          145 PQ-GRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKE---------------------------------TG-  189 (313)
Q Consensus       145 ~~-~~i~~~~~~~~~~~i~t~~~d~~i~lwd~~~~~~~~~~~~~---------------------------------~~-  189 (313)
                      +. -.+..+.|+|.+++++.|+.|+.+|+-+--+-+++.++...                                 .. 
T Consensus       208 e~~lG~k~v~wsP~~qflavGsyD~~lrvlnh~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~a~  287 (447)
T KOG4497|consen  208 ERGLGLKFVEWSPCNQFLAVGSYDQMLRVLNHFTWKPFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTDLEAH  287 (447)
T ss_pred             eeccceeEEEeccccceEEeeccchhhhhhceeeeeehhhhccchhccCchhhhhhhhhcchhhhcccccccCCCccccC
Confidence            11 24667899999999999999999988653332222111100                                 00 


Q ss_pred             -----------------------------ceeceEEEEECCCCCEEEEeeCC--CcEEEEECCCCcEEEEEecCCceeEE
Q 021399          190 -----------------------------HKKTITSLAKAADGSHFLTGSLD--KSAKLWDARTLELIKTYVTERPVNAV  238 (313)
Q Consensus       190 -----------------------------h~~~v~~~~~s~~~~~l~s~s~d--g~i~iwd~~~~~~~~~~~~~~~~~~~  238 (313)
                                                   -...+-.++|++|..++++-...  +.+-+||++..+....+....++++.
T Consensus       288 ~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~lafs~Ds~y~aTrnd~~PnalW~Wdlq~l~l~avLiQk~piraf  367 (447)
T KOG4497|consen  288 IWEESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLAFSCDSTYAATRNDKYPNALWLWDLQNLKLHAVLIQKHPIRAF  367 (447)
T ss_pred             ccccchhhhhhhhcceeeecccCCCCCCCcccccceeeecCCceEEeeecCCCCceEEEEechhhhhhhhhhhccceeEE
Confidence                                         01235668899999988886643  56889999988887777778899999


Q ss_pred             EeccCCCEEEEcccccCceeEeeccCCCceeeeeeehhhhhhhccccccccceeEEEECCCCCeeEEE
Q 021399          239 TMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKRYGFL  306 (313)
Q Consensus       239 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~fspdgk~~~~~  306 (313)
                      .|+|....++++.|..              ...+|-+.-...++.. +-.-.|.++.|+.+|.-++++
T Consensus       368 ~WdP~~prL~vctg~s--------------rLY~W~psg~~~V~vP-~~GF~i~~l~W~~~g~~i~l~  420 (447)
T KOG4497|consen  368 EWDPGRPRLVVCTGKS--------------RLYFWAPSGPRVVGVP-KKGFNIQKLQWLQPGEFIVLC  420 (447)
T ss_pred             EeCCCCceEEEEcCCc--------------eEEEEcCCCceEEecC-CCCceeeeEEecCCCcEEEEE
Confidence            9999999888765432              1334443222222221 123588999999998876554

>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.61  E-value=7.8e-13  Score=107.93  Aligned_cols=229  Identities=12%  Similarity=0.121  Sum_probs=153.6

Q ss_pred             ccceeEEEEccCCCEEEEeeCCCCeEEEeCCCCcEEEEecCCCCceEEEEECCCCCeEEEeeCC--CcEEEEECCCCeEE
Q 021399           10 ERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSAD--QTAKLWNVETGAQL   87 (313)
Q Consensus        10 ~~~v~~~~fs~~g~~l~s~s~d~~i~iw~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D--~~v~vWd~~~~~~~   87 (313)
                      ...+....|..+...|..|+.||. +++..++-........-.-.|--.-|+.+  +++-.+.+  +.+++.+...+..+
T Consensus         5 ~~ti~~~~~Nqd~~~lsvGs~~Gy-k~~~~~~~~k~~~~~~~~~~IvEmLFSSS--LvaiV~~~qpr~Lkv~~~Kk~~~I   81 (391)
T KOG2110|consen    5 KPTINFIGFNQDSTLLSVGSKDGY-KIFSCSPFEKCFSKDTEGVSIVEMLFSSS--LVAIVSIKQPRKLKVVHFKKKTTI   81 (391)
T ss_pred             CcceeeeeeccceeEEEccCCCce-eEEecCchHHhhcccCCCeEEEEeecccc--eeEEEecCCCceEEEEEcccCceE
Confidence            345778889999999999999998 88887765542222222223444445544  55555544  45999999988889


Q ss_pred             EEecCCCCeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEccCCCEEEEe--e
Q 021399           88 FTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISA--G  165 (313)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~t~--~  165 (313)
                      +.+.+..++.++.+.-...+++...        .+.++++.......   .+.....+...+..+..++.+.+++-=  .
T Consensus        82 Ce~~fpt~IL~VrmNr~RLvV~Lee--------~IyIydI~~MklLh---TI~t~~~n~~gl~AlS~n~~n~ylAyp~s~  150 (391)
T KOG2110|consen   82 CEIFFPTSILAVRMNRKRLVVCLEE--------SIYIYDIKDMKLLH---TIETTPPNPKGLCALSPNNANCYLAYPGST  150 (391)
T ss_pred             EEEecCCceEEEEEccceEEEEEcc--------cEEEEecccceeeh---hhhccCCCccceEeeccCCCCceEEecCCC
Confidence            9888888888887765555544322        23333332211000   000111122223333444444566542  2


Q ss_pred             CCCeEEEEECCCCceeeecccccCceeceEEEEECCCCCEEEEeeCCCc-EEEEECCCCcEEEEEecC---CceeEEEec
Q 021399          166 EDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKS-AKLWDARTLELIKTYVTE---RPVNAVTMS  241 (313)
Q Consensus       166 ~d~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~dg~-i~iwd~~~~~~~~~~~~~---~~~~~~~~~  241 (313)
                      ..|.|.|||..+-+....+.   .|++.+-+++|+++|.+|||+|..|+ ||++.+.+++.+.++...   ..+.+++|+
T Consensus       151 t~GdV~l~d~~nl~~v~~I~---aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs  227 (391)
T KOG2110|consen  151 TSGDVVLFDTINLQPVNTIN---AHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFS  227 (391)
T ss_pred             CCceEEEEEcccceeeeEEE---ecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCceeeEEEEEEEC
Confidence            46889999998766665554   79999999999999999999999998 689999999999998653   357889999


Q ss_pred             cCCCEEEEcccccC
Q 021399          242 PLLDHVVLGGGQDA  255 (313)
Q Consensus       242 p~~~~~~~~~~~~~  255 (313)
                      |+++.+.+++..+.
T Consensus       228 ~ds~~L~~sS~TeT  241 (391)
T KOG2110|consen  228 PDSQFLAASSNTET  241 (391)
T ss_pred             CCCCeEEEecCCCe
Confidence            99997776665444

>PRK05137 tolB translocation protein TolB; Provisional

Probab=99.60  E-value=7.5e-13  Score=117.87  Aligned_cols=206  Identities=15%  Similarity=0.090  Sum_probs=131.5

Q ss_pred             CCeEEEeCCCCcEEEEecCCCCceEEEEECCCCCeEEEeeC---CCcEEEEECCCCeEEEEecCCCCeeEEEeecCCeEE
Q 021399           32 HTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSA---DQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLA  108 (313)
Q Consensus        32 ~~i~iw~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~---D~~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  108 (313)
                      ..|.+||.+ +.....+..|...+.+.+|+|||+.++..+.   +..|.+||+.+++.....                  
T Consensus       182 ~~l~~~d~d-g~~~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~~l~------------------  242 (435)
T PRK05137        182 KRLAIMDQD-GANVRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRELVG------------------  242 (435)
T ss_pred             eEEEEECCC-CCCcEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEEEee------------------
Confidence            467788864 4445567788889999999999998776653   468999998876532110                  


Q ss_pred             EEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEccCCCEEE-EeeCCC--eEEEEECCCCceeeecc
Q 021399          109 VITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTII-SAGEDA--IVRIWDTETGKLLKESD  185 (313)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~-t~~~d~--~i~lwd~~~~~~~~~~~  185 (313)
                                                         ...+.+....|+|+|+.++ +.+.++  .|++||+.++.. +.+.
T Consensus       243 -----------------------------------~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~-~~Lt  286 (435)
T PRK05137        243 -----------------------------------NFPGMTFAPRFSPDGRKVVMSLSQGGNTDIYTMDLRSGTT-TRLT  286 (435)
T ss_pred             -----------------------------------cCCCcccCcEECCCCCEEEEEEecCCCceEEEEECCCCce-EEcc
Confidence                                               0112234567899998775 444444  477889887654 3332


Q ss_pred             cccCceeceEEEEECCCCCEEEEeeC-CC--cEEEEECCCCcEEEEEecCCceeEEEeccCCCEEEEcccccCceeEeec
Q 021399          186 KETGHKKTITSLAKAADGSHFLTGSL-DK--SAKLWDARTLELIKTYVTERPVNAVTMSPLLDHVVLGGGQDASAVTTTD  262 (313)
Q Consensus       186 ~~~~h~~~v~~~~~s~~~~~l~s~s~-dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~  262 (313)
                         .+........|+|||+.|+..+. +|  .|.+||+.+++..+............|+|+++.++......+       
T Consensus       287 ---~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~~~lt~~~~~~~~~~~SpdG~~ia~~~~~~~-------  356 (435)
T PRK05137        287 ---DSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNPRRISFGGGRYSTPVWSPRGDLIAFTKQGGG-------  356 (435)
T ss_pred             ---CCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCeEEeecCCCcccCeEECCCCCEEEEEEcCCC-------
Confidence               24445667899999999887764 33  688889887665433333444567889999999877543221       


Q ss_pred             cCCCceeeeeeehhhhhhhccccccccceeEEEECCCCCeeEEEEE
Q 021399          263 HRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKRYGFLLL  308 (313)
Q Consensus       263 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~fspdgk~~~~~~~  308 (313)
                          .+.+.++|...+.. ..+ .....+...+|+|||+.++|...
T Consensus       357 ----~~~i~~~d~~~~~~-~~l-t~~~~~~~p~~spDG~~i~~~~~  396 (435)
T PRK05137        357 ----QFSIGVMKPDGSGE-RIL-TSGFLVEGPTWAPNGRVIMFFRQ  396 (435)
T ss_pred             ----ceEEEEEECCCCce-Eec-cCCCCCCCCeECCCCCEEEEEEc
Confidence                12233333221111 111 11234677899999999998754

>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]

Probab=99.59  E-value=3.3e-15  Score=132.94  Aligned_cols=227  Identities=19%  Similarity=0.286  Sum_probs=147.9

Q ss_pred             cccccccceeEEEEccCCCEEEEeeCCCCeEEEeCCCCcEEEEecCCCCceEEEEECCCCCeEEEeeCCCcEEEEECCCC
Q 021399            5 LMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETG   84 (313)
Q Consensus         5 ~l~~h~~~v~~~~fs~~g~~l~s~s~d~~i~iw~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~v~vWd~~~~   84 (313)
                      .++||++.++.++.+.+..+++++|.|..|++|.+.++.++..+.+|+++|++++|+|-    .+.+.||++++||.+-.
T Consensus       227 s~rGhs~ditdlavs~~n~~iaaaS~D~vIrvWrl~~~~pvsvLrghtgavtaiafsP~----~sss~dgt~~~wd~r~~  302 (1113)
T KOG0644|consen  227 SCRGHSGDITDLAVSSNNTMIAAASNDKVIRVWRLPDGAPVSVLRGHTGAVTAIAFSPR----ASSSDDGTCRIWDARLE  302 (1113)
T ss_pred             cCCCCccccchhccchhhhhhhhcccCceEEEEecCCCchHHHHhccccceeeeccCcc----ccCCCCCceEecccccc
Confidence            47899999999999999999999999999999999999999999999999999999995    37789999999998721


Q ss_pred             eEEEEecCCCCeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEccC-CCEEEE
Q 021399           85 AQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPL-NRTIIS  163 (313)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~i~t  163 (313)
                      ..+...   .   -..+..++.++.......+.     ......++.. ...-....+..+...+.-+..+.+ ..+.++
T Consensus       303 ~~~y~p---r---p~~~~~~~~~~s~~~~~~~~-----~f~Tgs~d~e-a~n~e~~~l~~~~~~lif~t~ssd~~~~~~~  370 (1113)
T KOG0644|consen  303 PRIYVP---R---PLKFTEKDLVDSILFENNGD-----RFLTGSRDGE-ARNHEFEQLAWRSNLLIFVTRSSDLSSIVVT  370 (1113)
T ss_pred             ccccCC---C---CCCcccccceeeeecccccc-----ccccccCCcc-cccchhhHhhhhccceEEEecccccccccee
Confidence            111110   0   01111222222221111000     0000000000 000000011122222222222211 234566


Q ss_pred             eeCCCeEEEEECCCCceeeecccccCceeceEEEEECCCCCE-EEEeeCCCcEEEEECCCCcEEEEEe-cCCceeEEEec
Q 021399          164 AGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSH-FLTGSLDKSAKLWDARTLELIKTYV-TERPVNAVTMS  241 (313)
Q Consensus       164 ~~~d~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~-l~s~s~dg~i~iwd~~~~~~~~~~~-~~~~~~~~~~~  241 (313)
                      +=.+..+.+|++.++.+....   .+|...+..+.++|-... ..+++.||...|||+-.+.+++.+. ....+....|+
T Consensus       371 ar~~~~~~vwnl~~g~l~H~l---~ghsd~~yvLd~Hpfn~ri~msag~dgst~iwdi~eg~pik~y~~gh~kl~d~kFS  447 (1113)
T KOG0644|consen  371 ARNDHRLCVWNLYTGQLLHNL---MGHSDEVYVLDVHPFNPRIAMSAGYDGSTIIWDIWEGIPIKHYFIGHGKLVDGKFS  447 (1113)
T ss_pred             eeeeeEeeeeecccchhhhhh---cccccceeeeeecCCCcHhhhhccCCCceEeeecccCCcceeeecccceeeccccC
Confidence            667888999999998765433   478899999999997665 4589999999999999998887775 23456667788


Q ss_pred             cCCCEEEEc
Q 021399          242 PLLDHVVLG  250 (313)
Q Consensus       242 p~~~~~~~~  250 (313)
                      ++|.+++++
T Consensus       448 qdgts~~ls  456 (1113)
T KOG0644|consen  448 QDGTSIALS  456 (1113)
T ss_pred             CCCceEecC
Confidence            887766553

>KOG1273 consensus WD40 repeat protein [General function prediction only]

Probab=99.59  E-value=8e-13  Score=105.82  Aligned_cols=233  Identities=17%  Similarity=0.229  Sum_probs=146.7

Q ss_pred             ccccccccceeEEEEccCCCEEEEeeCCCCeEEEeCCCCcEEEEecCCCCceEEEEECCCCC-eEEEeeCCCcEEEEECC
Q 021399            4 ILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSM-TLITGSADQTAKLWNVE   82 (313)
Q Consensus         4 ~~l~~h~~~v~~~~fs~~g~~l~s~s~d~~i~iw~~~~~~~~~~~~~H~~~V~~~~~~~~~~-~l~s~s~D~~v~vWd~~   82 (313)
                      ++|.+|..+|.+++||+||++|+|+|.|-.+++||+..|.+++.++- ..+|+.+.|+|.++ .++..=.+..-.+-++.
T Consensus        59 r~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~rirf-~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s  137 (405)
T KOG1273|consen   59 RMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLKRIRF-DSPVWGAQWHPRKRNKCVATIMEESPVVIDFS  137 (405)
T ss_pred             hhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCCceeEEEc-cCccceeeeccccCCeEEEEEecCCcEEEEec
Confidence            47889999999999999999999999999999999999999888874 78999999999654 33333334334444444


Q ss_pred             CCeEEEEec-CCC----CeeEEEeecCCeEEEEECCC-ceeccccceeeeeeeCCCCCCCceEEEecCCC-CceEEEEEc
Q 021399           83 TGAQLFTFN-FDS----PARSVDFAVGDKLAVITTDP-FMELNSAIHVKRIARDPADQGGESVLILKGPQ-GRINRAVWG  155 (313)
Q Consensus        83 ~~~~~~~~~-~~~----~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~~~~  155 (313)
                      .+....... ...    ......|...++.+...+.+ .+.+      .+.      .+.+.+..++-.. ..|.++-++
T Consensus       138 ~~~h~~Lp~d~d~dln~sas~~~fdr~g~yIitGtsKGkllv------~~a------~t~e~vas~rits~~~IK~I~~s  205 (405)
T KOG1273|consen  138 DPKHSVLPKDDDGDLNSSASHGVFDRRGKYIITGTSKGKLLV------YDA------ETLECVASFRITSVQAIKQIIVS  205 (405)
T ss_pred             CCceeeccCCCccccccccccccccCCCCEEEEecCcceEEE------Eec------chheeeeeeeechheeeeEEEEe
Confidence            332211111 000    01111133333444333322 1111      100      0011122222112 456778888


Q ss_pred             cCCCEEEEeeCCCeEEEEECCCCcee-eecccccCc-------eeceEEEEECCCCCEEEEeeC-CCcEEEEECCCCcEE
Q 021399          156 PLNRTIISAGEDAIVRIWDTETGKLL-KESDKETGH-------KKTITSLAKAADGSHFLTGSL-DKSAKLWDARTLELI  226 (313)
Q Consensus       156 ~~~~~i~t~~~d~~i~lwd~~~~~~~-~~~~~~~~h-------~~~v~~~~~s~~~~~l~s~s~-dg~i~iwd~~~~~~~  226 (313)
                      ..|+.|+.-+.|..||.++.+.--.. +.......|       +-.-.+++|+.+|.++..++. -..++||...+|.++
T Consensus       206 ~~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~ccfs~dgeYv~a~s~~aHaLYIWE~~~GsLV  285 (405)
T KOG1273|consen  206 RKGRFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQWKKCCFSGDGEYVCAGSARAHALYIWEKSIGSLV  285 (405)
T ss_pred             ccCcEEEEecCCceEEEEehhhhcccCccCCcChhHHHHHHHhhhhhhheeecCCccEEEeccccceeEEEEecCCccee
Confidence            89999999999999999997631111 000100011       223457789999999888874 346899999999999


Q ss_pred             EEEecC--CceeEEEeccCCCEEEE
Q 021399          227 KTYVTE--RPVNAVTMSPLLDHVVL  249 (313)
Q Consensus       227 ~~~~~~--~~~~~~~~~p~~~~~~~  249 (313)
                      +.+...  .....+.|+|....++.
T Consensus       286 KILhG~kgE~l~DV~whp~rp~i~s  310 (405)
T KOG1273|consen  286 KILHGTKGEELLDVNWHPVRPIIAS  310 (405)
T ss_pred             eeecCCchhheeecccccceeeeee
Confidence            888653  34677889998776554

>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.59  E-value=6.9e-15  Score=122.98  Aligned_cols=216  Identities=17%  Similarity=0.230  Sum_probs=159.1

Q ss_pred             ceeEEEEccCCCEEEEeeCCCCeEEEeCCCCcEEEEecCCCCceEEEEECCCCCeEEEeeCCCcEEEEECCCCeEEEEec
Q 021399           12 PLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFN   91 (313)
Q Consensus        12 ~v~~~~fs~~g~~l~s~s~d~~i~iw~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~v~vWd~~~~~~~~~~~   91 (313)
                      +.+.+.|+.+|.+|+-|+.-|.+-.+|..++.+...+.- ...|..+.|-.+.++|| ..+...+.|||-. |..+..+.
T Consensus       131 GPY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~v-~Etv~Dv~~LHneq~~A-VAQK~y~yvYD~~-GtElHClk  207 (545)
T KOG1272|consen  131 GPYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEINV-METVRDVTFLHNEQFFA-VAQKKYVYVYDNN-GTELHCLK  207 (545)
T ss_pred             CCeeeeecCCccEEEecCCccceeeeecccceeeeeeeh-hhhhhhhhhhcchHHHH-hhhhceEEEecCC-CcEEeehh
Confidence            457899999999999999999999999999988766653 34677788876666555 4677889999954 33444343


Q ss_pred             CCCCeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEccCCCEEEEeeCCCeEE
Q 021399           92 FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVR  171 (313)
Q Consensus        92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~t~~~d~~i~  171 (313)
                      -...+..+.|.|--.+++..++.-+     ....++.      .+..+..+....+++..+.-+|-...+-+|...|+|.
T Consensus       208 ~~~~v~rLeFLPyHfLL~~~~~~G~-----L~Y~DVS------~GklVa~~~t~~G~~~vm~qNP~NaVih~GhsnGtVS  276 (545)
T KOG1272|consen  208 RHIRVARLEFLPYHFLLVAASEAGF-----LKYQDVS------TGKLVASIRTGAGRTDVMKQNPYNAVIHLGHSNGTVS  276 (545)
T ss_pred             hcCchhhhcccchhheeeecccCCc-----eEEEeec------hhhhhHHHHccCCccchhhcCCccceEEEcCCCceEE
Confidence            4445666677776555555443211     2222222      2334444444456666667778777788999999999


Q ss_pred             EEECCCCceeeecccccCceeceEEEEECCCCCEEEEeeCCCcEEEEECCCCcEEEEEecCCceeEEEeccCC
Q 021399          172 IWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTERPVNAVTMSPLL  244 (313)
Q Consensus       172 lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~p~~  244 (313)
                      +|...+..++-.+.   .|.+.|.++++.++|.++||.+.|..++|||++....+.++..+.+...+++|--+
T Consensus       277 lWSP~skePLvKiL---cH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~tp~~a~~ls~Sqkg  346 (545)
T KOG1272|consen  277 LWSPNSKEPLVKIL---CHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLHTYRTPHPASNLSLSQKG  346 (545)
T ss_pred             ecCCCCcchHHHHH---hcCCCcceEEECCCCcEEeecccccceeEeeeccccccceeecCCCcccccccccc
Confidence            99999887765442   69999999999999999999999999999999998877777667778888887544

>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]

Probab=99.59  E-value=3e-14  Score=111.18  Aligned_cols=161  Identities=16%  Similarity=0.220  Sum_probs=118.6

Q ss_pred             cccceeEEEEccC-C--CEEEEeeCCCCeEEEeCCCCcE----------EEEecCCCCceEEEEECCCCCeEEEeeCCCc
Q 021399            9 HERPLTYLKYNKD-G--DLLFSCAKDHTPTVWFADNGER----------LGTYRGHNGAVWCCDVSRDSMTLITGSADQT   75 (313)
Q Consensus         9 h~~~v~~~~fs~~-g--~~l~s~s~d~~i~iw~~~~~~~----------~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~   75 (313)
                      -.+.+.|..+..+ +  -+|+.|-++|.+.+||+.++..          ......|+++|.++.+.+.-..=++|+.+..
T Consensus       149 Klgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dk  228 (323)
T KOG0322|consen  149 KLGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDK  228 (323)
T ss_pred             ccCceeeeeccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCcccc
Confidence            3456666664432 3  2667788899999999999843          3344689999999999876566678888888


Q ss_pred             EEEEECCCCeEEEEecCCCCeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEc
Q 021399           76 AKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWG  155 (313)
Q Consensus        76 v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~  155 (313)
                      +..|++..........                                            .    ...-.+..+..+.+-
T Consensus       229 l~~~Sl~~s~gslq~~--------------------------------------------~----e~~lknpGv~gvrIR  260 (323)
T KOG0322|consen  229 LVMYSLNHSTGSLQIR--------------------------------------------K----EITLKNPGVSGVRIR  260 (323)
T ss_pred             ceeeeeccccCccccc--------------------------------------------c----eEEecCCCccceEEc
Confidence            8899875421100000                                            0    000011234556677


Q ss_pred             cCCCEEEEeeCCCeEEEEECCCCceeeecccccCceeceEEEEECCCCCEEEEeeCCCcEEEEEC
Q 021399          156 PLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDA  220 (313)
Q Consensus       156 ~~~~~i~t~~~d~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~dg~i~iwd~  220 (313)
                      |+++.+||+|.|++||+|.-++..++..+.   -|+..|++++|+|+...+|++|.|++|.+|++
T Consensus       261 pD~KIlATAGWD~RiRVyswrtl~pLAVLk---yHsagvn~vAfspd~~lmAaaskD~rISLWkL  322 (323)
T KOG0322|consen  261 PDGKILATAGWDHRIRVYSWRTLNPLAVLK---YHSAGVNAVAFSPDCELMAAASKDARISLWKL  322 (323)
T ss_pred             cCCcEEeecccCCcEEEEEeccCCchhhhh---hhhcceeEEEeCCCCchhhhccCCceEEeeec
Confidence            889999999999999999998887765544   48899999999999999999999999999986

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=99.57  E-value=2.4e-14  Score=122.14  Aligned_cols=168  Identities=23%  Similarity=0.360  Sum_probs=120.8

Q ss_pred             EEEecCCCCceEEEEECCCCCeEEEeeCCCcEEEEECCCCeEEEEecCCCCeeEEEeecCCeEEEEECCCceecccccee
Q 021399           45 LGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHV  124 (313)
Q Consensus        45 ~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  124 (313)
                      .+++.||++-|+|++|+.+|.+|+|||.|-.+.|||+...+.+..+                                  
T Consensus        43 E~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI----------------------------------   88 (758)
T KOG1310|consen   43 EAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSI----------------------------------   88 (758)
T ss_pred             hhhhccccceecceeecCCCCEEeecCCcceEEeecchhcceeeee----------------------------------
Confidence            4578999999999999999999999999999999998755443222                                  


Q ss_pred             eeeeeCCCCCCCceEEEecCCCCceEEEEEccC--CCEEEEeeCCCeEEEEECCCCce-------eeecccccCceeceE
Q 021399          125 KRIARDPADQGGESVLILKGPQGRINRAVWGPL--NRTIISAGEDAIVRIWDTETGKL-------LKESDKETGHKKTIT  195 (313)
Q Consensus       125 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~~~i~t~~~d~~i~lwd~~~~~~-------~~~~~~~~~h~~~v~  195 (313)
                                       ..+|.+.|.++.|-|.  .+.+++|..|..|+|+|+...+.       .-+...-..|...|.
T Consensus        89 -----------------~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVK  151 (758)
T KOG1310|consen   89 -----------------STGHTANIFSVKFVPYTNNRIVLSGAGDKLIKLFDLDSSKEGGMDHGMEETTRCWSCHTDRVK  151 (758)
T ss_pred             -----------------ecccccceeEEeeeccCCCeEEEeccCcceEEEEecccccccccccCccchhhhhhhhhhhhh
Confidence                             2356677777777664  46789999999999999875221       111111235778888


Q ss_pred             EEEECCCC-CEEEEeeCCCcEEEEECCCCc-E------EEEEe--cC--CceeEEEeccCCCEEEEcccccCceeEeecc
Q 021399          196 SLAKAADG-SHFLTGSLDKSAKLWDARTLE-L------IKTYV--TE--RPVNAVTMSPLLDHVVLGGGQDASAVTTTDH  263 (313)
Q Consensus       196 ~~~~s~~~-~~l~s~s~dg~i~iwd~~~~~-~------~~~~~--~~--~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~  263 (313)
                      .++..|++ +.+-+++.||+|+-+|++... |      ...+.  ..  -...++.++|...+.++.|+++ -+..++|.
T Consensus       152 ria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~lielk~ltisp~rp~~laVGgsd-pfarLYD~  230 (758)
T KOG1310|consen  152 RIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQLIELKCLTISPSRPYYLAVGGSD-PFARLYDR  230 (758)
T ss_pred             heecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHhchhhheeeeeeecCCCCceEEecCCC-chhhhhhh
Confidence            88888988 779999999999999998621 1      11110  01  1367899999988777766654 34556674


Q ss_pred             C
Q 021399          264 R  264 (313)
Q Consensus       264 ~  264 (313)
                      |
T Consensus       231 R  231 (758)
T KOG1310|consen  231 R  231 (758)
T ss_pred             h
Confidence            3

>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.57  E-value=3.6e-13  Score=111.56  Aligned_cols=138  Identities=18%  Similarity=0.300  Sum_probs=96.9

Q ss_pred             EEEEEccCCCEEEEeeCCCeEEEEECCCCceeeecccccCceeceEEEEECCCCCEEEEeeCCCcEEEEECCCCcEEEEE
Q 021399          150 NRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTY  229 (313)
Q Consensus       150 ~~~~~~~~~~~i~t~~~d~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~  229 (313)
                      ..+++++++..+++++.||++|+|+..+...+...   ..|...|.++.|+|||++|++-+.| ..++|+.+++.++...
T Consensus       148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e---~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~~  223 (398)
T KOG0771|consen  148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEE---IAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALARK  223 (398)
T ss_pred             eEEEEcCCCCEeeeccccceEEEEecCcchhhhhh---HhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhhhc
Confidence            56889999999999999999999995544433322   3588999999999999999999999 8999999988332221


Q ss_pred             ec-------------------------------------------------------CCceeEEEeccCCCEEEEccccc
Q 021399          230 VT-------------------------------------------------------ERPVNAVTMSPLLDHVVLGGGQD  254 (313)
Q Consensus       230 ~~-------------------------------------------------------~~~~~~~~~~p~~~~~~~~~~~~  254 (313)
                      ..                                                       ...+.+++.+++|..++++.-+ 
T Consensus       224 t~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~AlGT~d-  302 (398)
T KOG0771|consen  224 TPFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLALGTMD-  302 (398)
T ss_pred             CCcccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEEEEeccC-
Confidence            10                                                       1134566667777766665442 


Q ss_pred             CceeEeeccCCCceeeeeeehhhhhh-hccccccccceeEEEECCCCCeeEE
Q 021399          255 ASAVTTTDHRAGKFEAKFFDKILQEE-IGGVKGHFGPINALAFNPDGKRYGF  305 (313)
Q Consensus       255 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~h~~~V~~~~fspdgk~~~~  305 (313)
                       +.|.+++.            .+.+. ....++|...|+.++|+||.++++-
T Consensus       303 -GsVai~~~------------~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~s  341 (398)
T KOG0771|consen  303 -GSVAIYDA------------KSLQRLQYVKEAHLGFVTGLTFSPDSRYLAS  341 (398)
T ss_pred             -CcEEEEEe------------ceeeeeEeehhhheeeeeeEEEcCCcCcccc
Confidence             22322222            11111 1234589999999999999998765

>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.56  E-value=1.1e-11  Score=99.46  Aligned_cols=209  Identities=16%  Similarity=0.250  Sum_probs=133.3

Q ss_pred             ceeEEEEccCCCEEEEeeCCCCeEEEeCCCCcEEEEecCCCCceEEEEECCCCCeE-EEeeCC------CcEEEEECCCC
Q 021399           12 PLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTL-ITGSAD------QTAKLWNVETG   84 (313)
Q Consensus        12 ~v~~~~fs~~g~~l~s~s~d~~i~iw~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l-~s~s~D------~~v~vWd~~~~   84 (313)
                      ....++|+.|-.-++.|-.+|- |||+.+.-+...+-+-+.+.+.-+..-...+++ +.||.+      ..|.|||=...
T Consensus         7 ~~lsvs~NQD~ScFava~~~Gf-riyn~~P~ke~~~r~~~~~G~~~veMLfR~N~laLVGGg~~pky~pNkviIWDD~k~   85 (346)
T KOG2111|consen    7 KTLSVSFNQDHSCFAVATDTGF-RIYNCDPFKESASRQFIDGGFKIVEMLFRSNYLALVGGGSRPKYPPNKVIIWDDLKE   85 (346)
T ss_pred             ceeEEEEccCCceEEEEecCce-EEEecCchhhhhhhccccCchhhhhHhhhhceEEEecCCCCCCCCCceEEEEecccC
Confidence            3456999999988887777665 999988644322222222221111111112333 344443      57999996556


Q ss_pred             eEEEEecCCCCeeEEEeecCCeEEEEECCCc-eeccccc---eeeeeeeCC------------------CCCCC------
Q 021399           85 AQLFTFNFDSPARSVDFAVGDKLAVITTDPF-MELNSAI---HVKRIARDP------------------ADQGG------  136 (313)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~---~~~~~~~~~------------------~~~~~------  136 (313)
                      .++..+.+..++..+.+..+..+++....-+ +......   +.-+....+                  ....+      
T Consensus        86 ~~i~el~f~~~I~~V~l~r~riVvvl~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k~~LafPg~k~GqvQi~d  165 (346)
T KOG2111|consen   86 RCIIELSFNSEIKAVKLRRDRIVVVLENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNKSLLAFPGFKTGQVQIVD  165 (346)
T ss_pred             cEEEEEEeccceeeEEEcCCeEEEEecCeEEEEEcCCChhheeeeecccCCCceEeecCCCCceEEEcCCCccceEEEEE
Confidence            6777777778888777765544333321100 0000000   000000000                  00000      


Q ss_pred             ------ceEEEecCCCCceEEEEEccCCCEEEEeeCCCe-EEEEECCCCceeeecccccCceeceEEEEECCCCCEEEEe
Q 021399          137 ------ESVLILKGPQGRINRAVWGPLNRTIISAGEDAI-VRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTG  209 (313)
Q Consensus       137 ------~~~~~~~~~~~~i~~~~~~~~~~~i~t~~~d~~-i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~  209 (313)
                            .....+..|.+.|.++.++.+|..+||+|..|+ |||||..++.+++++.... ....|.+++|||+..+|+.+
T Consensus       166 L~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~-d~A~iy~iaFSp~~s~Lavs  244 (346)
T KOG2111|consen  166 LASTKPNAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGV-DRADIYCIAFSPNSSWLAVS  244 (346)
T ss_pred             hhhcCcCCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCC-chheEEEEEeCCCccEEEEE
Confidence                  122456789999999999999999999999987 7999999999998875433 35789999999999999999


Q ss_pred             eCCCcEEEEECCC
Q 021399          210 SLDKSAKLWDART  222 (313)
Q Consensus       210 s~dg~i~iwd~~~  222 (313)
                      |..|++.|+.++.
T Consensus       245 SdKgTlHiF~l~~  257 (346)
T KOG2111|consen  245 SDKGTLHIFSLRD  257 (346)
T ss_pred             cCCCeEEEEEeec
Confidence            9999999998775

>KOG1188 consensus WD40 repeat protein [General function prediction only]

Probab=99.55  E-value=5.5e-14  Score=113.45  Aligned_cols=215  Identities=16%  Similarity=0.190  Sum_probs=128.9

Q ss_pred             cccccccceeEEEEcc--CCCEEEEeeCCCCeEEEeCCCCcEEEE-----------------------------------
Q 021399            5 LMKGHERPLTYLKYNK--DGDLLFSCAKDHTPTVWFADNGERLGT-----------------------------------   47 (313)
Q Consensus         5 ~l~~h~~~v~~~~fs~--~g~~l~s~s~d~~i~iw~~~~~~~~~~-----------------------------------   47 (313)
                      .+++|...+..++|..  ....+.+|+.||+||+||+........                                   
T Consensus        65 ~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f~~ld~nck~~ii~~GtE~~~s~A~  144 (376)
T KOG1188|consen   65 EFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPFICLDLNCKKNIIACGTELTRSDAS  144 (376)
T ss_pred             eecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcceEeeccCcCCeEEeccccccCceE
Confidence            4567888888889976  467899999999999999775321100                                   


Q ss_pred             ----------------ecCCCCceEEEEECCCC-CeEEEeeCCCcEEEEECCCCe----EEEEecCCCCeeEEEeecCC-
Q 021399           48 ----------------YRGHNGAVWCCDVSRDS-MTLITGSADQTAKLWNVETGA----QLFTFNFDSPARSVDFAVGD-  105 (313)
Q Consensus        48 ----------------~~~H~~~V~~~~~~~~~-~~l~s~s~D~~v~vWd~~~~~----~~~~~~~~~~~~~~~~~~~~-  105 (313)
                                      ++.|...|+++.|+|.+ ++|+|||.||.|.++|++...    ...+++....+..+.|.-.. 
T Consensus       145 v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~EeDaL~~viN~~sSI~~igw~~~~y  224 (376)
T KOG1188|consen  145 VVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDNEEDALLHVINHGSSIHLIGWLSKKY  224 (376)
T ss_pred             EEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeecCCCcchhhHHHhhcccceeeeeeeecCCc
Confidence                            14799999999999964 699999999999999986543    34556677778888887544 


Q ss_pred             -eEEEEECCCceeccccceeeeeeeC-CCCCCCceEEEecCCCCceEEEEEccCCCEEEEeeC-CCeEEEEEC---CCCc
Q 021399          106 -KLAVITTDPFMELNSAIHVKRIARD-PADQGGESVLILKGPQGRINRAVWGPLNRTIISAGE-DAIVRIWDT---ETGK  179 (313)
Q Consensus       106 -~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~t~~~-d~~i~lwd~---~~~~  179 (313)
                       ++.+.+....+..+...+.....+- ..+....-.+ -+.....+....-..+...++.++. -++..++-+   .++.
T Consensus       225 krI~clTH~Etf~~~ele~~~~~~~~~~~~~~~~d~r-~~~~~dY~I~~~~~~~~~~~~l~g~~~n~~~~~~~~~~~s~~  303 (376)
T KOG1188|consen  225 KRIMCLTHMETFAIYELEDGSEETWLENPDVSADDLR-KEDNCDYVINEHSPGDKDTCALAGTDSNKGTIFPLVDTSSGS  303 (376)
T ss_pred             ceEEEEEccCceeEEEccCCChhhcccCccchhhhHH-hhhhhhheeecccCCCcceEEEeccccCceeEEEeeeccccc
Confidence             5555544332222111110000000 0000000000 0000001111111122344555544 555555543   3343


Q ss_pred             eeeecccc-cCceeceEEEEECCCCCEEEEeeCCCcEEEEEC
Q 021399          180 LLKESDKE-TGHKKTITSLAKAADGSHFLTGSLDKSAKLWDA  220 (313)
Q Consensus       180 ~~~~~~~~-~~h~~~v~~~~~s~~~~~l~s~s~dg~i~iwd~  220 (313)
                      ........ -+|...|+++.|...+.++.||+.||.+.+|..
T Consensus       304 ~~~~~a~l~g~~~eiVR~i~~~~~~~~l~TGGEDG~l~~Wk~  345 (376)
T KOG1188|consen  304 LLTEPAILQGGHEEIVRDILFDVKNDVLYTGGEDGLLQAWKV  345 (376)
T ss_pred             ccCccccccCCcHHHHHHHhhhcccceeeccCCCceEEEEec
Confidence            33333222 347788999999999999999999999999975

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=99.54  E-value=2e-12  Score=118.27  Aligned_cols=270  Identities=18%  Similarity=0.233  Sum_probs=157.2

Q ss_pred             cceeEEEEccCCCEEEEeeCCCCeEEEeCCCCcEEEEecCCC---CceEEEEEC--CCCCeEEEeeCCCcEEEEEC-CC-
Q 021399           11 RPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHN---GAVWCCDVS--RDSMTLITGSADQTAKLWNV-ET-   83 (313)
Q Consensus        11 ~~v~~~~fs~~g~~l~s~s~d~~i~iw~~~~~~~~~~~~~H~---~~V~~~~~~--~~~~~l~s~s~D~~v~vWd~-~~-   83 (313)
                      ++...+.|+|-.+.++++...-.|+|||.+.++.+..|..+.   ..|..+.+-  .|..++++|+.||.||||+- .. 
T Consensus      1065 ~~pk~~~~hpf~p~i~~ad~r~~i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~ 1144 (1387)
T KOG1517|consen 1065 QPPKTLKFHPFEPQIAAADDRERIRVWDWEKGRLLNGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVIRIWKDYADK 1144 (1387)
T ss_pred             CCCceeeecCCCceeEEcCCcceEEEEecccCceeccccCCCCCCCccceeeeecccchhheeeeccCceEEEecccccc
Confidence            355678999999999999888899999999999988777654   468887763  24458999999999999974 22 


Q ss_pred             ---CeEEEEec--------CCCCeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEec-CCCCceEE
Q 021399           84 ---GAQLFTFN--------FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILK-GPQGRINR  151 (313)
Q Consensus        84 ---~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~  151 (313)
                         .+.+....        ......-++|......++++.+     ...+++|+..++.      .+..+. +...-++.
T Consensus      1145 ~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd-----~r~IRIWDa~~E~------~~~diP~~s~t~vTa 1213 (1387)
T KOG1517|consen 1145 WKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGD-----VRSIRIWDAHKEQ------VVADIPYGSSTLVTA 1213 (1387)
T ss_pred             cCCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecCC-----eeEEEEEecccce------eEeecccCCCcccee
Confidence               12221111        0111122222221111121111     1112233322111      111111 11112222


Q ss_pred             EEE-ccCCCEEEEeeCCCeEEEEECCCCceeeecccccCceec--eEEEEECCCCCE-EEEeeCCCcEEEEECCCCcEEE
Q 021399          152 AVW-GPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKT--ITSLAKAADGSH-FLTGSLDKSAKLWDARTLELIK  227 (313)
Q Consensus       152 ~~~-~~~~~~i~t~~~d~~i~lwd~~~~~~~~~~~~~~~h~~~--v~~~~~s~~~~~-l~s~s~dg~i~iwd~~~~~~~~  227 (313)
                      +.- .+.|+.|+.|-.||.|++||.+....-..+..-..|+..  |..+.+.++|-. |+||+.||.|++||+++.....
T Consensus      1214 LS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~ 1293 (1387)
T KOG1517|consen 1214 LSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKET 1293 (1387)
T ss_pred             ecccccCCceEEEeecCCceEEeecccCCccccceeecccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCcccc
Confidence            221 134788999999999999998764331112112246666  888888886655 9999999999999999852211


Q ss_pred             --EEec----CCceeEEEeccCCCEEEEcccccCceeEeeccCCCceeeeeeehhhhhhhccccc-cccceeEEEECCCC
Q 021399          228 --TYVT----ERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKG-HFGPINALAFNPDG  300 (313)
Q Consensus       228 --~~~~----~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-h~~~V~~~~fspdg  300 (313)
                        ++..    .....++..|+..+.++.|++   ..+.+|+.......+...+       ..+.+ -.+.+.+++|+|--
T Consensus      1294 ~~~iv~~~~yGs~lTal~VH~hapiiAsGs~---q~ikIy~~~G~~l~~~k~n-------~~F~~q~~gs~scL~FHP~~ 1363 (1387)
T KOG1517|consen 1294 FLTIVAHWEYGSALTALTVHEHAPIIASGSA---QLIKIYSLSGEQLNIIKYN-------PGFMGQRIGSVSCLAFHPHR 1363 (1387)
T ss_pred             cceeeeccccCccceeeeeccCCCeeeecCc---ceEEEEecChhhhcccccC-------cccccCcCCCcceeeecchh
Confidence              1111    224788889998887665543   3455555544443332222       11111 23567999999974


Q ss_pred             C
Q 021399          301 K  301 (313)
Q Consensus       301 k  301 (313)
                      -
T Consensus      1364 ~ 1364 (1387)
T KOG1517|consen 1364 L 1364 (1387)
T ss_pred             H
Confidence            3

>PRK04922 tolB translocation protein TolB; Provisional

Probab=99.54  E-value=1.9e-12  Score=115.13  Aligned_cols=206  Identities=15%  Similarity=0.072  Sum_probs=130.1

Q ss_pred             CCeEEEeCCCCcEEEEecCCCCceEEEEECCCCCeEEEeeC---CCcEEEEECCCCeEEEEecCCCCeeEEEeecCCeEE
Q 021399           32 HTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSA---DQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLA  108 (313)
Q Consensus        32 ~~i~iw~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~---D~~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  108 (313)
                      ..|.+||.+ +.....+..|...+.+.+|+|||+.++..+.   +..|.+||+.+++.......                
T Consensus       184 ~~l~i~D~~-g~~~~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~l~~~----------------  246 (433)
T PRK04922        184 YALQVADSD-GYNPQTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQRELVASF----------------  246 (433)
T ss_pred             EEEEEECCC-CCCceEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEEeccC----------------
Confidence            458888875 4444566677888999999999998887663   34688899877653221100                


Q ss_pred             EEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEccCCCEEE-EeeCCC--eEEEEECCCCceeeecc
Q 021399          109 VITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTII-SAGEDA--IVRIWDTETGKLLKESD  185 (313)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~-t~~~d~--~i~lwd~~~~~~~~~~~  185 (313)
                                                           .+......|+|+++.++ +.+.++  .|++||+.++... .+.
T Consensus       247 -------------------------------------~g~~~~~~~SpDG~~l~~~~s~~g~~~Iy~~d~~~g~~~-~lt  288 (433)
T PRK04922        247 -------------------------------------RGINGAPSFSPDGRRLALTLSRDGNPEIYVMDLGSRQLT-RLT  288 (433)
T ss_pred             -------------------------------------CCCccCceECCCCCEEEEEEeCCCCceEEEEECCCCCeE-ECc
Confidence                                                 01112456888888765 344444  6999999887643 232


Q ss_pred             cccCceeceEEEEECCCCCEEEEeeC-CCc--EEEEECCCCcEEEEEecCCceeEEEeccCCCEEEEcccccCceeEeec
Q 021399          186 KETGHKKTITSLAKAADGSHFLTGSL-DKS--AKLWDARTLELIKTYVTERPVNAVTMSPLLDHVVLGGGQDASAVTTTD  262 (313)
Q Consensus       186 ~~~~h~~~v~~~~~s~~~~~l~s~s~-dg~--i~iwd~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~  262 (313)
                         .+.......+|+|||+.|+..+. +|.  |.++|+.+++..+...........+|+|+++.++.....+.       
T Consensus       289 ---~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~~lt~~g~~~~~~~~SpDG~~Ia~~~~~~~-------  358 (433)
T PRK04922        289 ---NHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAERLTFQGNYNARASVSPDGKKIAMVHGSGG-------  358 (433)
T ss_pred             ---cCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCeEEeecCCCCccCEEECCCCCEEEEEECCCC-------
Confidence               23444567899999998887764 444  66778877665333223333446899999999877643221       


Q ss_pred             cCCCceeeeeeehhhhhhhccccccccceeEEEECCCCCeeEEEEE
Q 021399          263 HRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKRYGFLLL  308 (313)
Q Consensus       263 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~fspdgk~~~~~~~  308 (313)
                          .+.+.+||..+++.. .+ .+........|+|||+.++|...
T Consensus       359 ----~~~I~v~d~~~g~~~-~L-t~~~~~~~p~~spdG~~i~~~s~  398 (433)
T PRK04922        359 ----QYRIAVMDLSTGSVR-TL-TPGSLDESPSFAPNGSMVLYATR  398 (433)
T ss_pred             ----ceeEEEEECCCCCeE-EC-CCCCCCCCceECCCCCEEEEEEe
Confidence                223444454333221 11 22334556799999999988765

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=99.54  E-value=2.1e-12  Score=119.78  Aligned_cols=227  Identities=15%  Similarity=0.159  Sum_probs=149.1

Q ss_pred             cccccccceeEEEEccC-CCEEEEeeCCCCeEEEeCCCCc-------EEEEecCCCCceEEEEECCCCCeEEEeeCCCcE
Q 021399            5 LMKGHERPLTYLKYNKD-GDLLFSCAKDHTPTVWFADNGE-------RLGTYRGHNGAVWCCDVSRDSMTLITGSADQTA   76 (313)
Q Consensus         5 ~l~~h~~~v~~~~fs~~-g~~l~s~s~d~~i~iw~~~~~~-------~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~v   76 (313)
                      .|..|+..|..++.++. +.+++|||.||+||+|++..-.       ...++.--...+.++.+.+.++.+|.++.||.|
T Consensus      1043 hL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~~Av~t~DG~v 1122 (1431)
T KOG1240|consen 1043 HLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQFAVSTKDGSV 1122 (1431)
T ss_pred             hhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCeEEEEcCCCeE
Confidence            46678888888777654 5999999999999999876422       122333235678889998999999999999999


Q ss_pred             EEEECCCCeEEEEecCCCCeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEcc
Q 021399           77 KLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGP  156 (313)
Q Consensus        77 ~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~  156 (313)
                      ++.+++-.+......      ...-.+                            .......+..+.+...       ..
T Consensus      1123 ~~~~id~~~~~~~~~------~~~ri~----------------------------n~~~~g~vv~m~a~~~-------~~ 1161 (1431)
T KOG1240|consen 1123 RVLRIDHYNVSKRVA------TQVRIP----------------------------NLKKDGVVVSMHAFTA-------IV 1161 (1431)
T ss_pred             EEEEcccccccccee------eeeecc----------------------------cccCCCceEEeecccc-------cc
Confidence            999886421100000      000000                            0000001111111110       01


Q ss_pred             CCCEEEEeeCCCeEEEEECCCCceeeecccccCceeceEEEEECCCCCEEEEeeCCCcEEEEECCCCcEEEEEec--CCc
Q 021399          157 LNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVT--ERP  234 (313)
Q Consensus       157 ~~~~i~t~~~d~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~--~~~  234 (313)
                      ....++.+..-+.|..||+.+...+.+... ....+.|++++.+|.+++++.|+..|.+.+||+|-+.++..+.+  ..+
T Consensus      1162 ~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~-~~~hG~vTSi~idp~~~WlviGts~G~l~lWDLRF~~~i~sw~~P~~~~ 1240 (1431)
T KOG1240|consen 1162 QSHVLVYATDLSRIVSWDTRMRHDAWRLKN-QLRHGLVTSIVIDPWCNWLVIGTSRGQLVLWDLRFRVPILSWEHPARAP 1240 (1431)
T ss_pred             cceeEEEEEeccceEEecchhhhhHHhhhc-CccccceeEEEecCCceEEEEecCCceEEEEEeecCceeecccCcccCC
Confidence            112577788888999999987654433322 23457899999999999999999999999999999999988865  356


Q ss_pred             eeEEEeccCCC--EEEEcccc-cCceeEeeccCCCceeeeee
Q 021399          235 VNAVTMSPLLD--HVVLGGGQ-DASAVTTTDHRAGKFEAKFF  273 (313)
Q Consensus       235 ~~~~~~~p~~~--~~~~~~~~-~~~~~~~~~~~~~~~~~~~~  273 (313)
                      ++-++.+|...  ...++++. ..+.+..|+--.+.-...+|
T Consensus      1241 i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~g~~~~vl~ 1282 (1431)
T KOG1240|consen 1241 IRHVWLCPTYPQESVSVSAGSSSNNEVSTWNMETGLRQTVLW 1282 (1431)
T ss_pred             cceEEeeccCCCCceEEEecccCCCceeeeecccCcceEEEE
Confidence            88888888766  55555555 55556666655544444444

>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]

Probab=99.53  E-value=8e-13  Score=104.70  Aligned_cols=196  Identities=17%  Similarity=0.218  Sum_probs=129.0

Q ss_pred             ccccceeEEEEcc-CCCEEEEeeCCCCeEEEeCCCCc---EEEEecCCCCceEEEEECCCC-CeEEEeeCCCcEEEEECC
Q 021399            8 GHERPLTYLKYNK-DGDLLFSCAKDHTPTVWFADNGE---RLGTYRGHNGAVWCCDVSRDS-MTLITGSADQTAKLWNVE   82 (313)
Q Consensus         8 ~h~~~v~~~~fs~-~g~~l~s~s~d~~i~iw~~~~~~---~~~~~~~H~~~V~~~~~~~~~-~~l~s~s~D~~v~vWd~~   82 (313)
                      .+..++++..|.. |-++|.+.|-|.+-.|||++++.   +..++-+|.++|..++|...+ +.|+|.|.||.||++|++
T Consensus       148 ~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR  227 (364)
T KOG0290|consen  148 EFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLR  227 (364)
T ss_pred             ccCCcccccccccCCcceeEeecccCeEEEEEEeeccccceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEec
Confidence            3555677777764 45788999999999999999863   467889999999999999865 489999999999999998


Q ss_pred             CCeEEEE-ecC---CCCeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEccCC
Q 021399           83 TGAQLFT-FNF---DSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLN  158 (313)
Q Consensus        83 ~~~~~~~-~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~  158 (313)
                      .-+.-.+ +..   ..+...+.+.+.+....+..   ..-...+...++     .....++..+.+|++.|+.++|.|..
T Consensus       228 ~leHSTIIYE~p~~~~pLlRLswnkqDpnymATf---~~dS~~V~iLDi-----R~P~tpva~L~~H~a~VNgIaWaPhS  299 (364)
T KOG0290|consen  228 SLEHSTIIYEDPSPSTPLLRLSWNKQDPNYMATF---AMDSNKVVILDI-----RVPCTPVARLRNHQASVNGIAWAPHS  299 (364)
T ss_pred             ccccceEEecCCCCCCcceeeccCcCCchHHhhh---hcCCceEEEEEe-----cCCCcceehhhcCcccccceEecCCC
Confidence            7553222 221   22333344433221111100   000111111111     11235677889999999999999875


Q ss_pred             -CEEEEeeCCCeEEEEECCCCce--eeecccccCceeceEEEEECC-CCCEEEEeeC
Q 021399          159 -RTIISAGEDAIVRIWDTETGKL--LKESDKETGHKKTITSLAKAA-DGSHFLTGSL  211 (313)
Q Consensus       159 -~~i~t~~~d~~i~lwd~~~~~~--~~~~~~~~~h~~~v~~~~~s~-~~~~l~s~s~  211 (313)
                       ..|+|||+|....+||+.+...  .-.....-.-.+.|.-+.|++ .++.|+.+..
T Consensus       300 ~~hictaGDD~qaliWDl~q~~~~~~~dPilay~a~~EVNqi~Ws~~~~Dwiai~~~  356 (364)
T KOG0290|consen  300 SSHICTAGDDCQALIWDLQQMPRENGEDPILAYTAGGEVNQIQWSSSQPDWIAICFG  356 (364)
T ss_pred             CceeeecCCcceEEEEecccccccCCCCchhhhhccceeeeeeecccCCCEEEEEec
Confidence             6899999999999999875321  000000011356899999984 5667766653

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=99.52  E-value=8.4e-12  Score=110.84  Aligned_cols=192  Identities=13%  Similarity=0.095  Sum_probs=127.8

Q ss_pred             cccccccccceeEEEEccCCCEEEEeeCC---CCeEEEeCCCCcEEEEecCCCCceEEEEECCCCCeEE-EeeCCC--cE
Q 021399            3 PILMKGHERPLTYLKYNKDGDLLFSCAKD---HTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLI-TGSADQ--TA   76 (313)
Q Consensus         3 ~~~l~~h~~~v~~~~fs~~g~~l~s~s~d---~~i~iw~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~-s~s~D~--~v   76 (313)
                      ++.+..+...+...+|+|||++|+.++.+   ..|++||+.+++.. .+..+.+.+.+++|+||++.|+ +.+.++  .|
T Consensus       182 ~~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~-~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~i  260 (417)
T TIGR02800       182 PQTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQRE-KVASFPGMNGAPAFSPDGSKLAVSLSKDGNPDI  260 (417)
T ss_pred             CEEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEE-EeecCCCCccceEECCCCCEEEEEECCCCCccE
Confidence            45566677778899999999999987654   47999999888653 3344566677899999998664 555544  47


Q ss_pred             EEEECCCCeEEEEecCCCCeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEcc
Q 021399           77 KLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGP  156 (313)
Q Consensus        77 ~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~  156 (313)
                      .+||+.+++.....                                                     .+........|+|
T Consensus       261 ~~~d~~~~~~~~l~-----------------------------------------------------~~~~~~~~~~~s~  287 (417)
T TIGR02800       261 YVMDLDGKQLTRLT-----------------------------------------------------NGPGIDTEPSWSP  287 (417)
T ss_pred             EEEECCCCCEEECC-----------------------------------------------------CCCCCCCCEEECC
Confidence            77777665322110                                                     0011112345788


Q ss_pred             CCCEEEEeeCC-C--eEEEEECCCCceeeecccccCceeceEEEEECCCCCEEEEeeCCC---cEEEEECCCCcEEEEEe
Q 021399          157 LNRTIISAGED-A--IVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDK---SAKLWDARTLELIKTYV  230 (313)
Q Consensus       157 ~~~~i~t~~~d-~--~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~dg---~i~iwd~~~~~~~~~~~  230 (313)
                      +++.|+..+.. +  .|+++|+.+++.. .+.   .+.......+|+|+|++|+.++.++   .|.+||++++.. ..+.
T Consensus       288 dg~~l~~~s~~~g~~~iy~~d~~~~~~~-~l~---~~~~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~-~~l~  362 (417)
T TIGR02800       288 DGKSIAFTSDRGGSPQIYMMDADGGEVR-RLT---FRGGYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGGE-RVLT  362 (417)
T ss_pred             CCCEEEEEECCCCCceEEEEECCCCCEE-Eee---cCCCCccCeEECCCCCEEEEEEccCCceEEEEEeCCCCCe-EEcc
Confidence            88877765542 2  5888888766532 222   1344567788999999999988876   788999988654 3333


Q ss_pred             cCCceeEEEeccCCCEEEEcccc
Q 021399          231 TERPVNAVTMSPLLDHVVLGGGQ  253 (313)
Q Consensus       231 ~~~~~~~~~~~p~~~~~~~~~~~  253 (313)
                      ........+|+|++..++.+...
T Consensus       363 ~~~~~~~p~~spdg~~l~~~~~~  385 (417)
T TIGR02800       363 DTGLDESPSFAPNGRMILYATTR  385 (417)
T ss_pred             CCCCCCCceECCCCCEEEEEEeC
Confidence            22234556899999988776543

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=99.51  E-value=4e-11  Score=103.57  Aligned_cols=267  Identities=19%  Similarity=0.178  Sum_probs=145.6

Q ss_pred             eEEEEccCCCEEEEeeCCCCeEEEeCCCCcEEEEecCCCCceEEEEECCCCCeEEEee-CCCcEEEEECCCCeEEEEecC
Q 021399           14 TYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGS-ADQTAKLWNVETGAQLFTFNF   92 (313)
Q Consensus        14 ~~~~fs~~g~~l~s~s~d~~i~iw~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s-~D~~v~vWd~~~~~~~~~~~~   92 (313)
                      ..+.|+|||++++.++.|+.|.++|+.+.+.+++++.-. .-.++++++||++++++. .++.+.++|.++.+.+..+..
T Consensus        40 ~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G~-~~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~  118 (369)
T PF02239_consen   40 AGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKVGG-NPRGIAVSPDGKYVYVANYEPGTVSVIDAETLEPVKTIPT  118 (369)
T ss_dssp             EEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-SS-EEEEEEE--TTTEEEEEEEETTEEEEEETTT--EEEEEE-
T ss_pred             eEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEecCC-CcceEEEcCCCCEEEEEecCCCceeEeccccccceeeccc
Confidence            457899999999999999999999999999999998644 356799999999887665 689999999999888776542


Q ss_pred             C--------CCeeEEEeecCCe-EEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEccCCCEEEE
Q 021399           93 D--------SPARSVDFAVGDK-LAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIIS  163 (313)
Q Consensus        93 ~--------~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~t  163 (313)
                      .        .....+-.++... +++...+       ..+++-+...  +........+. .........|+|++++++.
T Consensus       119 ~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd-------~~~I~vVdy~--d~~~~~~~~i~-~g~~~~D~~~dpdgry~~v  188 (369)
T PF02239_consen  119 GGMPVDGPESRVAAIVASPGRPEFVVNLKD-------TGEIWVVDYS--DPKNLKVTTIK-VGRFPHDGGFDPDGRYFLV  188 (369)
T ss_dssp             -EE-TTTS---EEEEEE-SSSSEEEEEETT-------TTEEEEEETT--TSSCEEEEEEE---TTEEEEEE-TTSSEEEE
T ss_pred             ccccccccCCCceeEEecCCCCEEEEEEcc-------CCeEEEEEec--cccccceeeec-ccccccccccCcccceeee
Confidence            1        1122333333332 2222111       1122222111  11111111221 2234567889999998766


Q ss_pred             e-eCCCeEEEEECCCCceeeeccc-ccCceeceEEEE-------E--CCCCCEEEEeeCCCcEEEEECCCCcEEEEEecC
Q 021399          164 A-GEDAIVRIWDTETGKLLKESDK-ETGHKKTITSLA-------K--AADGSHFLTGSLDKSAKLWDARTLELIKTYVTE  232 (313)
Q Consensus       164 ~-~~d~~i~lwd~~~~~~~~~~~~-~~~h~~~v~~~~-------~--s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~  232 (313)
                      + .....|-++|.++++....+.. ...|......+-       |  .-.+...++.-....+.+||..+.+.++++...
T Consensus       189 a~~~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~php~~g~vw~~~~~~~~~~~~ig~~~v~v~d~~~wkvv~~I~~~  268 (369)
T PF02239_consen  189 AANGSNKIAVIDTKTGKLVALIDTGKKPHPGPGANFPHPGFGPVWATSGLGYFAIPLIGTDPVSVHDDYAWKVVKTIPTQ  268 (369)
T ss_dssp             EEGGGTEEEEEETTTTEEEEEEE-SSSBEETTEEEEEETTTEEEEEEEBSSSSEEEEEE--TTT-STTTBTSEEEEEE-S
T ss_pred             cccccceeEEEeeccceEEEEeeccccccccccccccCCCcceEEeeccccceecccccCCccccchhhcCeEEEEEECC
Confidence            4 5677899999998876543321 112332222221       1  112233333333446678999999999999866


Q ss_pred             CceeEEEeccCCCEEEEcc--cccCceeEeeccCCCceeeeeeehhhhhhhcccccc-ccceeEEEECCCCCee
Q 021399          233 RPVNAVTMSPLLDHVVLGG--GQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGH-FGPINALAFNPDGKRY  303 (313)
Q Consensus       233 ~~~~~~~~~p~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h-~~~V~~~~fspdgk~~  303 (313)
                      .....+.-||++.++.+..  +.+...+.+.|.+            +.+.+..+... ..++..++|++||+++
T Consensus       269 G~glFi~thP~s~~vwvd~~~~~~~~~v~viD~~------------tl~~~~~i~~~~~~~~~h~ef~~dG~~v  330 (369)
T PF02239_consen  269 GGGLFIKTHPDSRYVWVDTFLNPDADTVQVIDKK------------TLKVVKTITPGPGKRVVHMEFNPDGKEV  330 (369)
T ss_dssp             SSS--EE--TT-SEEEEE-TT-SSHT-EEEEECC------------GTEEEE-HHHHHT--EEEEEE-TTSSEE
T ss_pred             CCcceeecCCCCccEEeeccCCCCCceEEEEECc------------CcceeEEEeccCCCcEeccEECCCCCEE
Confidence            5558888899999998861  2223344444433            32222222111 2348999999999973

...

>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]

Probab=99.51  E-value=3.7e-13  Score=114.73  Aligned_cols=215  Identities=20%  Similarity=0.304  Sum_probs=131.1

Q ss_pred             CCCCceEEEEECCCCCeEEEeeCCCcEEEEECCCCeEEEEecCCCC-eeEEEeec--------CCeEEEEECCCceeccc
Q 021399           50 GHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFNFDSP-ARSVDFAV--------GDKLAVITTDPFMELNS  120 (313)
Q Consensus        50 ~H~~~V~~~~~~~~~~~l~s~s~D~~v~vWd~~~~~~~~~~~~~~~-~~~~~~~~--------~~~~~~~~~~~~~~~~~  120 (313)
                      .|...|.|+.|+.+.+.+.+++.+..++-||+.+.........+.- .......+        .+.+++.++++-+.+..
T Consensus        12 r~~e~vc~v~w~~~eei~~~~dDh~~~~~~~~~~~s~~~~~~p~df~pt~~h~~~rs~~~g~~~d~~~i~s~DGkf~il~   91 (737)
T KOG1524|consen   12 RNSEKVCCVDWSSNEEIYFVSDDHQIFKWSDVSRDSVEVAKLPDDFVPTDMHLGGRSSGGGKGSDTLLICSNDGRFVILN   91 (737)
T ss_pred             ccceeEEeecccccceEEEeccCceEEEeecccchhhhhhhCCcccCCccccccccccCCCCCcceEEEEcCCceEEEec
Confidence            4666778889987766666666555555566544332111100000 00000000        12344444433221110


Q ss_pred             cceeeeeeeCCCCCCCceEEEecCCCCceEEEEEccCCCEEEEeeCCCeEEEEECCC---------Cceeeeccc-----
Q 021399          121 AIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTET---------GKLLKESDK-----  186 (313)
Q Consensus       121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~t~~~d~~i~lwd~~~---------~~~~~~~~~-----  186 (313)
                                   ..++.-.....|.+.+.+-.|+|+|.-++++|+||.|++|...-         ...+.....     
T Consensus        92 -------------k~~rVE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSrsGMLRStl~Q~~~~v~c~~W~p~S~  158 (737)
T KOG1524|consen   92 -------------KSARVERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWSRSGMLRSTVVQNEESIRCARWAPNSN  158 (737)
T ss_pred             -------------ccchhhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEeccchHHHHHhhcCceeEEEEECCCCC
Confidence                         01111223457888899999999999999999999999997321         111111110     


Q ss_pred             -----------------------ccCceeceEEEEECCCCCEEEEeeCCCcEEEEECCCCcEEEEEecCCceeEEEeccC
Q 021399          187 -----------------------ETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTERPVNAVTMSPL  243 (313)
Q Consensus       187 -----------------------~~~h~~~v~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~p~  243 (313)
                                             =..|.+-|.++.|++..+.|+||+.|=..++||.....+...-.++.++.+++|+|+
T Consensus       159 ~vl~c~g~h~~IKpL~~n~k~i~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~~G~~Lf~S~~~ey~ITSva~npd  238 (737)
T KOG1524|consen  159 SIVFCQGGHISIKPLAANSKIIRWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDAQGANLFTSAAEEYAITSVAFNPE  238 (737)
T ss_pred             ceEEecCCeEEEeecccccceeEEeccCcEEEEeecCccccceeecCCceeEEeecccCcccccCChhccceeeeeeccc
Confidence                                   024888899999999999999999999999999875444444457889999999998


Q ss_pred             CCEEEEcccccCceeEeeccCCCceeeeeeehhhhhhhccccccccceeEEEECCCCCeeE
Q 021399          244 LDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKRYG  304 (313)
Q Consensus       244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~fspdgk~~~  304 (313)
                      -.. ++ ++..              ..|+-           +...+-|..++|||||.+++
T Consensus       239 ~~~-~v-~S~n--------------t~R~~-----------~p~~GSifnlsWS~DGTQ~a  272 (737)
T KOG1524|consen  239 KDY-LL-WSYN--------------TARFS-----------SPRVGSIFNLSWSADGTQAT  272 (737)
T ss_pred             cce-ee-eeee--------------eeeec-----------CCCccceEEEEEcCCCceee
Confidence            332 22 2211              11221           12467899999999999865

>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]

Probab=99.51  E-value=1.1e-13  Score=117.75  Aligned_cols=78  Identities=23%  Similarity=0.414  Sum_probs=71.8

Q ss_pred             ccceeEEEEccCCCEEEEeeCCCCeEEEeCCCCcEEEEecCCCCceEEEEECCCCCeEEEeeCCCcEEEEECCCCeEE
Q 021399           10 ERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQL   87 (313)
Q Consensus        10 ~~~v~~~~fs~~g~~l~s~s~d~~i~iw~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~v~vWd~~~~~~~   87 (313)
                      +..|...+|+|||++||+.|.||.+||+|..+.+++..++..=+...|++|+|||+++++||.|..|.||+..+.+.+
T Consensus       290 ~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg~mkSYFGGLLCvcWSPDGKyIvtGGEDDLVtVwSf~erRVV  367 (636)
T KOG2394|consen  290 EGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQELLGVMKSYFGGLLCVCWSPDGKYIVTGGEDDLVTVWSFEERRVV  367 (636)
T ss_pred             cccccceeEcCCCceEEEEecCceEEEeeccHHHHHHHHHhhccceEEEEEcCCccEEEecCCcceEEEEEeccceEE
Confidence            447888999999999999999999999999999999888888899999999999999999999999999998876543

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=99.50  E-value=2.2e-12  Score=118.07  Aligned_cols=237  Identities=14%  Similarity=0.200  Sum_probs=147.5

Q ss_pred             ceeEEEEc--cCCCEEEEeeCCCCeEEEe-CCC----CcEEEEec---CC----CCceEEEEECCCCCeEEEeeCCCcEE
Q 021399           12 PLTYLKYN--KDGDLLFSCAKDHTPTVWF-ADN----GERLGTYR---GH----NGAVWCCDVSRDSMTLITGSADQTAK   77 (313)
Q Consensus        12 ~v~~~~fs--~~g~~l~s~s~d~~i~iw~-~~~----~~~~~~~~---~H----~~~V~~~~~~~~~~~l~s~s~D~~v~   77 (313)
                      .|..+.+-  .|..++++|+.||.||||+ ..+    .+.+..+.   ++    .+.=.-++|......|+++|.-..|+
T Consensus      1111 ~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~IR 1190 (1387)
T KOG1517|consen 1111 RVSDLELINEQDDALLLTASSDGVIRIWKDYADKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVRSIR 1190 (1387)
T ss_pred             ccceeeeecccchhheeeeccCceEEEecccccccCCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecCCeeEEE
Confidence            46667664  3467999999999999993 333    23343332   22    11113467887766677777789999


Q ss_pred             EEECCCCeEEEEecCCC--CeeEEE--eecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCc--eEE
Q 021399           78 LWNVETGAQLFTFNFDS--PARSVD--FAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGR--INR  151 (313)
Q Consensus        78 vWd~~~~~~~~~~~~~~--~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--i~~  151 (313)
                      |||.+.......+....  .+..++  ...++.++++..++.      +++++..   .......+...+.|+..  |..
T Consensus      1191 IWDa~~E~~~~diP~~s~t~vTaLS~~~~~gn~i~AGfaDGs------vRvyD~R---~a~~ds~v~~~R~h~~~~~Iv~ 1261 (1387)
T KOG1517|consen 1191 IWDAHKEQVVADIPYGSSTLVTALSADLVHGNIIAAGFADGS------VRVYDRR---MAPPDSLVCVYREHNDVEPIVH 1261 (1387)
T ss_pred             EEecccceeEeecccCCCccceeecccccCCceEEEeecCCc------eEEeecc---cCCccccceeecccCCccccee
Confidence            99998776665554432  222222  122455555544433      3333221   11223456677777766  888


Q ss_pred             EEEccCCC-EEEEeeCCCeEEEEECCCCceeeecccccCc---eeceEEEEECCCCCEEEEeeCCCcEEEEECCCCcEEE
Q 021399          152 AVWGPLNR-TIISAGEDAIVRIWDTETGKLLKESDKETGH---KKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIK  227 (313)
Q Consensus       152 ~~~~~~~~-~i~t~~~d~~i~lwd~~~~~~~~~~~~~~~h---~~~v~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~  227 (313)
                      +.+.+.|- .+++|+.+|.|++||++..... .+.....|   .+..+++..++....+|+|+. +.|+||++.. +.+.
T Consensus      1262 ~slq~~G~~elvSgs~~G~I~~~DlR~~~~e-~~~~iv~~~~yGs~lTal~VH~hapiiAsGs~-q~ikIy~~~G-~~l~ 1338 (1387)
T KOG1517|consen 1262 LSLQRQGLGELVSGSQDGDIQLLDLRMSSKE-TFLTIVAHWEYGSALTALTVHEHAPIIASGSA-QLIKIYSLSG-EQLN 1338 (1387)
T ss_pred             EEeecCCCcceeeeccCCeEEEEecccCccc-ccceeeeccccCccceeeeeccCCCeeeecCc-ceEEEEecCh-hhhc
Confidence            88887664 4999999999999999874221 11111122   235899999999999999999 9999999864 3333


Q ss_pred             EEe--------cCCceeEEEeccCCCEEEEcccccCceeEeec
Q 021399          228 TYV--------TERPVNAVTMSPLLDHVVLGGGQDASAVTTTD  262 (313)
Q Consensus       228 ~~~--------~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~  262 (313)
                      .+.        ....+.|++|||..-.++  +|..+..|.++.
T Consensus      1339 ~~k~n~~F~~q~~gs~scL~FHP~~~llA--aG~~Ds~V~iYs 1379 (1387)
T KOG1517|consen 1339 IIKYNPGFMGQRIGSVSCLAFHPHRLLLA--AGSADSTVSIYS 1379 (1387)
T ss_pred             ccccCcccccCcCCCcceeeecchhHhhh--hccCCceEEEee
Confidence            321        123578999999654433  345555554444

>PRK03629 tolB translocation protein TolB; Provisional

Probab=99.50  E-value=1.6e-11  Score=108.95  Aligned_cols=205  Identities=10%  Similarity=-0.009  Sum_probs=125.3

Q ss_pred             CCeEEEeCCCCcEEEEecCCCCceEEEEECCCCCeEEEee---CCCcEEEEECCCCeEEEEecCCCCeeEEEeecCCeEE
Q 021399           32 HTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGS---ADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLA  108 (313)
Q Consensus        32 ~~i~iw~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s---~D~~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  108 (313)
                      ..|.+||.+.... ..+..+...+.+.+|+|||+.++..+   .+..+.+||+.+++......                 
T Consensus       179 ~~l~~~d~dg~~~-~~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l~~-----------------  240 (429)
T PRK03629        179 YELRVSDYDGYNQ-FVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVAS-----------------  240 (429)
T ss_pred             eeEEEEcCCCCCC-EEeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEccC-----------------
Confidence            3677888765443 34555677899999999999877543   24568888887664321110                 


Q ss_pred             EEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEccCCCEEEEe-eCCC--eEEEEECCCCceeeecc
Q 021399          109 VITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISA-GEDA--IVRIWDTETGKLLKESD  185 (313)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~t~-~~d~--~i~lwd~~~~~~~~~~~  185 (313)
                                                       +.+   ......|+|+|+.++.. +.++  .|++||+.+++..+ +.
T Consensus       241 ---------------------------------~~~---~~~~~~~SPDG~~La~~~~~~g~~~I~~~d~~tg~~~~-lt  283 (429)
T PRK03629        241 ---------------------------------FPR---HNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQ-VT  283 (429)
T ss_pred             ---------------------------------CCC---CcCCeEECCCCCEEEEEEcCCCCcEEEEEECCCCCEEE-cc
Confidence                                             011   12235789999888754 3343  58999998776533 22


Q ss_pred             cccCceeceEEEEECCCCCEEEEeeCC-Cc--EEEEECCCCcEEEEEecCCceeEEEeccCCCEEEEcccccC-ceeEee
Q 021399          186 KETGHKKTITSLAKAADGSHFLTGSLD-KS--AKLWDARTLELIKTYVTERPVNAVTMSPLLDHVVLGGGQDA-SAVTTT  261 (313)
Q Consensus       186 ~~~~h~~~v~~~~~s~~~~~l~s~s~d-g~--i~iwd~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~-~~~~~~  261 (313)
                         .+...+....|+|||+.|+..+.+ +.  |..+|+.+++..+...........+|+|+++.++..+..++ ..++.+
T Consensus       284 ---~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~~~lt~~~~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~  360 (429)
T PRK03629        284 ---DGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAPQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQ  360 (429)
T ss_pred             ---CCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCeEEeecCCCCccCEEECCCCCEEEEEEccCCCceEEEE
Confidence               233456788999999998877754 44  45557777655332222334557889999999877654332 223333


Q ss_pred             ccCCCceeeeeeehhhhhhhccccccccceeEEEECCCCCeeEEEEE
Q 021399          262 DHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKRYGFLLL  308 (313)
Q Consensus       262 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~fspdgk~~~~~~~  308 (313)
                      |...+..             ..+.. ........|+|||+.++|...
T Consensus       361 dl~~g~~-------------~~Lt~-~~~~~~p~~SpDG~~i~~~s~  393 (429)
T PRK03629        361 DLATGGV-------------QVLTD-TFLDETPSIAPNGTMVIYSSS  393 (429)
T ss_pred             ECCCCCe-------------EEeCC-CCCCCCceECCCCCEEEEEEc
Confidence            4322221             11111 112346789999999988764

>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]

Probab=99.50  E-value=1.1e-12  Score=105.14  Aligned_cols=197  Identities=17%  Similarity=0.297  Sum_probs=140.9

Q ss_pred             cccccccceeEEEEccCCCEEEEeeCCCCeEEEeC-CCCc--EEEEecCCCCceEEEEECCCCCeEEEeeCCCcEEEEEC
Q 021399            5 LMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFA-DNGE--RLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNV   81 (313)
Q Consensus         5 ~l~~h~~~v~~~~fs~~g~~l~s~s~d~~i~iw~~-~~~~--~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~v~vWd~   81 (313)
                      +|..|.+.|+++.|+|..+.|++|+.|...+||.. +.++  ..-.+..|+.+++++.|+|.++.|++||.-..|-||=+
T Consensus        50 tls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~~~~~WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~  129 (361)
T KOG1523|consen   50 TLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQPSGGTWKPTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYY  129 (361)
T ss_pred             ehhhhCcceeEEeecCCCCceeEccCCCCccccccCCCCeeccceeEEEeccceeeEeecCcCceEEeccCccEEEEEEE
Confidence            78999999999999999999999999999999988 4443  23356678999999999999999999999999888865


Q ss_pred             CCCeEEEEecCCCCeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEccCCCEE
Q 021399           82 ETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTI  161 (313)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i  161 (313)
                      +..+.=+.                               ..+.           +      +-+.+.|.++.|+|..-.+
T Consensus       130 E~ENdWWV-------------------------------sKhi-----------k------kPirStv~sldWhpnnVLl  161 (361)
T KOG1523|consen  130 EQENDWWV-------------------------------SKHI-----------K------KPIRSTVTSLDWHPNNVLL  161 (361)
T ss_pred             ecccceeh-------------------------------hhhh-----------C------CccccceeeeeccCCccee
Confidence            53221000                               0000           0      1123568899999999899


Q ss_pred             EEeeCCCeEEEEECCC------------------CceeeecccccCceeceEEEEECCCCCEEEEeeCCCcEEEEECCCC
Q 021399          162 ISAGEDAIVRIWDTET------------------GKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTL  223 (313)
Q Consensus       162 ~t~~~d~~i~lwd~~~------------------~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~dg~i~iwd~~~~  223 (313)
                      +.|+.|++.|++...-                  ++++.+.   ....+.+..+.|+|.|+.|+=.+.|.++.+-|....
T Consensus       162 aaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~---~~~ggwvh~v~fs~sG~~lawv~Hds~v~~~da~~p  238 (361)
T KOG1523|consen  162 AAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEA---SSSGGWVHGVLFSPSGNRLAWVGHDSTVSFVDAAGP  238 (361)
T ss_pred             cccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhh---ccCCCceeeeEeCCCCCEeeEecCCCceEEeecCCC
Confidence            9999999999986321                  1111111   134578999999999999999999999999987765


Q ss_pred             c-EEEEE-ecCCceeEEEeccCCCEEEEccccc
Q 021399          224 E-LIKTY-VTERPVNAVTMSPLLDHVVLGGGQD  254 (313)
Q Consensus       224 ~-~~~~~-~~~~~~~~~~~~p~~~~~~~~~~~~  254 (313)
                      . .+... ...-|..++.|-.  +..++++|.+
T Consensus       239 ~~~v~~~~~~~lP~ls~~~is--e~~vv~ag~~  269 (361)
T KOG1523|consen  239 SERVQSVATAQLPLLSVSWIS--ENSVVAAGYD  269 (361)
T ss_pred             chhccchhhccCCceeeEeec--CCceeecCCC
Confidence            3 22222 1234556666533  2224444444

>PRK02889 tolB translocation protein TolB; Provisional

Probab=99.50  E-value=6.2e-12  Score=111.56  Aligned_cols=206  Identities=15%  Similarity=0.118  Sum_probs=123.0

Q ss_pred             CCeEEEeCCCCcEEEEecCCCCceEEEEECCCCCeEEEeeCC---CcEEEEECCCCeEEEEecCCCCeeEEEeecCCeEE
Q 021399           32 HTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSAD---QTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLA  108 (313)
Q Consensus        32 ~~i~iw~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D---~~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  108 (313)
                      ..+.++|. ++.....+..+...+.+.+|+|||+.++..+.+   ..|.+||+.+++......                 
T Consensus       176 ~~L~~~D~-dG~~~~~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~l~~-----------------  237 (427)
T PRK02889        176 YQLQISDA-DGQNAQSALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRVVAN-----------------  237 (427)
T ss_pred             cEEEEECC-CCCCceEeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEEeec-----------------
Confidence            34566665 344445566778889999999999988766543   358899988765422110                 


Q ss_pred             EEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEccCCCEEE-EeeCCCeEEEE--ECCCCceeeecc
Q 021399          109 VITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTII-SAGEDAIVRIW--DTETGKLLKESD  185 (313)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~-t~~~d~~i~lw--d~~~~~~~~~~~  185 (313)
                                                          ..+......|+|+++.++ +.+.++..+||  |...+. +..+.
T Consensus       238 ------------------------------------~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~-~~~lt  280 (427)
T PRK02889        238 ------------------------------------FKGSNSAPAWSPDGRTLAVALSRDGNSQIYTVNADGSG-LRRLT  280 (427)
T ss_pred             ------------------------------------CCCCccceEECCCCCEEEEEEccCCCceEEEEECCCCC-cEECC
Confidence                                                011223467899998876 45667765555  554443 33332


Q ss_pred             cccCceeceEEEEECCCCCEEEEeeC-CCcEEEEE--CCCCcEEEEEecCCceeEEEeccCCCEEEEcccccCceeEeec
Q 021399          186 KETGHKKTITSLAKAADGSHFLTGSL-DKSAKLWD--ARTLELIKTYVTERPVNAVTMSPLLDHVVLGGGQDASAVTTTD  262 (313)
Q Consensus       186 ~~~~h~~~v~~~~~s~~~~~l~s~s~-dg~i~iwd--~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~  262 (313)
                         .+........|+|||+.|+..+. +|...+|.  +.+++..+...........+|+|+++.++.+....+       
T Consensus       281 ---~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~~lt~~g~~~~~~~~SpDG~~Ia~~s~~~g-------  350 (427)
T PRK02889        281 ---QSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQRVTFTGSYNTSPRISPDGKLLAYISRVGG-------  350 (427)
T ss_pred             ---CCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceEEEecCCCCcCceEECCCCCEEEEEEccCC-------
Confidence               23444567789999998886654 45666664  455543222222222345789999998876543321       


Q ss_pred             cCCCceeeeeeehhhhhhhccccccccceeEEEECCCCCeeEEEEE
Q 021399          263 HRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKRYGFLLL  308 (313)
Q Consensus       263 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~fspdgk~~~~~~~  308 (313)
                          .+++.+||..+++.. .+. ........+|+|||+.+.|..-
T Consensus       351 ----~~~I~v~d~~~g~~~-~lt-~~~~~~~p~~spdg~~l~~~~~  390 (427)
T PRK02889        351 ----AFKLYVQDLATGQVT-ALT-DTTRDESPSFAPNGRYILYATQ  390 (427)
T ss_pred             ----cEEEEEEECCCCCeE-Ecc-CCCCccCceECCCCCEEEEEEe
Confidence                123444444332221 111 1223467899999999998753

>KOG4227 consensus WD40 repeat protein [General function prediction only]

Probab=99.49  E-value=1.6e-12  Score=107.01  Aligned_cols=202  Identities=15%  Similarity=0.193  Sum_probs=138.9

Q ss_pred             EEecCCCCceEEEEECCCCCeEEEeeCCCcEEEEECCCCeEEEEecCCCCeeEEEeecCCeEEEEECCCceeccccceee
Q 021399           46 GTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVK  125 (313)
Q Consensus        46 ~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  125 (313)
                      +-+.+|.+-|.++.|+.++++|++||.|..+++|.++..-...                                     
T Consensus        50 KD~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k-------------------------------------   92 (609)
T KOG4227|consen   50 KDVREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRK-------------------------------------   92 (609)
T ss_pred             hhhhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhc-------------------------------------
Confidence            3457999999999999999999999999999999976421100                                     


Q ss_pred             eeeeCCCCCCCceEEEec-CCCCceEEEEEccCCCEEEEeeCCCeEEEEECCCCceeeecccccCceeceEEEEECCCCC
Q 021399          126 RIARDPADQGGESVLILK-GPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGS  204 (313)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~i~t~~~d~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~  204 (313)
                               ..+++.... -|.+.|.++.|....+.+.+|+.+++|.+-|+++.+.+-.+.. ....+.|..+..+|..+
T Consensus        93 ---------~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~VI~HDiEt~qsi~V~~~-~~~~~~VY~m~~~P~DN  162 (609)
T KOG4227|consen   93 ---------TPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGTVIKHDIETKQSIYVANE-NNNRGDVYHMDQHPTDN  162 (609)
T ss_pred             ---------CCCCceeccCccccceEEEEEccCCeeEecCCCcceeEeeecccceeeeeecc-cCcccceeecccCCCCc
Confidence                     011122222 2447899999998888999999999999999999877654432 23355899999999999


Q ss_pred             EEEEeeCCCcEEEEECCCCc-EEEEEe---cCCceeEEEeccCCCEEEEcccccCceeEeeccCCCceeeeeeehhhhhh
Q 021399          205 HFLTGSLDKSAKLWDARTLE-LIKTYV---TERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEE  280 (313)
Q Consensus       205 ~l~s~s~dg~i~iwd~~~~~-~~~~~~---~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  280 (313)
                      .+++.+.++.|.+||.+... ++..+.   .+..-.++.|+|.-..+++.....++ +.+||.|...-.+        -.
T Consensus       163 ~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~P~~P~Li~~~~~~~G-~~~~D~R~~~~~~--------~~  233 (609)
T KOG4227|consen  163 TLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYTAEFHPETPALILVNSETGG-PNVFDRRMQARPV--------YQ  233 (609)
T ss_pred             eEEEEecCceEEEEeccCCCCCCceeeecCCCccceeeeecCCCceeEEeccccCC-CCceeeccccchH--------Hh
Confidence            99999999999999988644 332221   23446688999998887776544332 3455554422111        01


Q ss_pred             hcccccccc---ceeEEEECCCCCee
Q 021399          281 IGGVKGHFG---PINALAFNPDGKRY  303 (313)
Q Consensus       281 ~~~~~~h~~---~V~~~~fspdgk~~  303 (313)
                      ...+++-..   .-..+.|+|+|.+|
T Consensus       234 ~~~~~~L~~~~~~~M~~~~~~~G~Q~  259 (609)
T KOG4227|consen  234 RSMFKGLPQENTEWMGSLWSPSGNQF  259 (609)
T ss_pred             hhccccCcccchhhhheeeCCCCCee
Confidence            111222222   22567788888875

>PRK04792 tolB translocation protein TolB; Provisional

Probab=99.49  E-value=1.4e-11  Score=109.78  Aligned_cols=224  Identities=14%  Similarity=0.084  Sum_probs=130.8

Q ss_pred             cccccccccceeEEEEccCCCEEEEeeCC-C--CeEEEeCCCCcEEEEecCCCCceEEEEECCCCCeEE-EeeCCCc--E
Q 021399            3 PILMKGHERPLTYLKYNKDGDLLFSCAKD-H--TPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLI-TGSADQT--A   76 (313)
Q Consensus         3 ~~~l~~h~~~v~~~~fs~~g~~l~s~s~d-~--~i~iw~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~-s~s~D~~--v   76 (313)
                      ++.+..+...+.+..|||||++|+..+.+ +  .|.+||+.+++.. .+....+.....+|+|||+.++ +.+.++.  |
T Consensus       210 ~~~l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~-~lt~~~g~~~~~~wSPDG~~La~~~~~~g~~~I  288 (448)
T PRK04792        210 EQMLLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVRE-KVTSFPGINGAPRFSPDGKKLALVLSKDGQPEI  288 (448)
T ss_pred             ceEeecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeE-EecCCCCCcCCeeECCCCCEEEEEEeCCCCeEE
Confidence            44555666678889999999999877643 3  4778888877642 2222233345689999999665 4566665  5


Q ss_pred             EEEECCCCeEEEEecCCCCeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEcc
Q 021399           77 KLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGP  156 (313)
Q Consensus        77 ~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~  156 (313)
                      .+||+.+++.....                                                     .+........|+|
T Consensus       289 y~~dl~tg~~~~lt-----------------------------------------------------~~~~~~~~p~wSp  315 (448)
T PRK04792        289 YVVDIATKALTRIT-----------------------------------------------------RHRAIDTEPSWHP  315 (448)
T ss_pred             EEEECCCCCeEECc-----------------------------------------------------cCCCCccceEECC
Confidence            55566554321100                                                     0111223456888


Q ss_pred             CCCEEEEeeC-C--CeEEEEECCCCceeeecccccCceeceEEEEECCCCCEEEEeeC-CC--cEEEEECCCCcEEEEEe
Q 021399          157 LNRTIISAGE-D--AIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSL-DK--SAKLWDARTLELIKTYV  230 (313)
Q Consensus       157 ~~~~i~t~~~-d--~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~-dg--~i~iwd~~~~~~~~~~~  230 (313)
                      +++.++..+. +  ..|+++|+.+++.. .+..   ........+|+|||++|+..+. ++  .|.++|+++++.. .+.
T Consensus       316 DG~~I~f~s~~~g~~~Iy~~dl~~g~~~-~Lt~---~g~~~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~~-~lt  390 (448)
T PRK04792        316 DGKSLIFTSERGGKPQIYRVNLASGKVS-RLTF---EGEQNLGGSITPDGRSMIMVNRTNGKFNIARQDLETGAMQ-VLT  390 (448)
T ss_pred             CCCEEEEEECCCCCceEEEEECCCCCEE-EEec---CCCCCcCeeECCCCCEEEEEEecCCceEEEEEECCCCCeE-Ecc
Confidence            8887766543 3  35777788766542 2211   1122345689999999877665 34  3555788887652 333


Q ss_pred             cCCceeEEEeccCCCEEEEcccccCc-eeEeeccCCCceeeeeeehhhhhhhccccccccceeEEEECC
Q 021399          231 TERPVNAVTMSPLLDHVVLGGGQDAS-AVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNP  298 (313)
Q Consensus       231 ~~~~~~~~~~~p~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~fsp  298 (313)
                      ........+|+|++..++.+...++. .++..+            . .++....+..+.+.+...+|||
T Consensus       391 ~~~~d~~ps~spdG~~I~~~~~~~g~~~l~~~~------------~-~G~~~~~l~~~~g~~~~p~Wsp  446 (448)
T PRK04792        391 STRLDESPSVAPNGTMVIYSTTYQGKQVLAAVS------------I-DGRFKARLPAGQGEVKSPAWSP  446 (448)
T ss_pred             CCCCCCCceECCCCCEEEEEEecCCceEEEEEE------------C-CCCceEECcCCCCCcCCCccCC
Confidence            22223345799999988776543322 233222            2 1222223334455667778877

>PRK00178 tolB translocation protein TolB; Provisional

Probab=99.49  E-value=2e-11  Score=108.78  Aligned_cols=191  Identities=13%  Similarity=0.098  Sum_probs=121.6

Q ss_pred             cccccccccceeEEEEccCCCEEEEeeCC---CCeEEEeCCCCcEEEEecCCCCceEEEEECCCCCeEE-EeeCCC--cE
Q 021399            3 PILMKGHERPLTYLKYNKDGDLLFSCAKD---HTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLI-TGSADQ--TA   76 (313)
Q Consensus         3 ~~~l~~h~~~v~~~~fs~~g~~l~s~s~d---~~i~iw~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~-s~s~D~--~v   76 (313)
                      ++.+..+...+...+|||||+.|+..+.+   ..|.+|++++++.. .+....+.+...+|+|||+.++ +.+.++  .|
T Consensus       191 ~~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~-~l~~~~g~~~~~~~SpDG~~la~~~~~~g~~~I  269 (430)
T PRK00178        191 AVTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRRE-QITNFEGLNGAPAWSPDGSKLAFVLSKDGNPEI  269 (430)
T ss_pred             ceEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEE-EccCCCCCcCCeEECCCCCEEEEEEccCCCceE
Confidence            45566677788899999999999877644   35888899888653 2333344455789999998665 555555  46


Q ss_pred             EEEECCCCeEEEEecCCCCeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEcc
Q 021399           77 KLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGP  156 (313)
Q Consensus        77 ~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~  156 (313)
                      .+||+.+++.....                                                     .+........|+|
T Consensus       270 y~~d~~~~~~~~lt-----------------------------------------------------~~~~~~~~~~~sp  296 (430)
T PRK00178        270 YVMDLASRQLSRVT-----------------------------------------------------NHPAIDTEPFWGK  296 (430)
T ss_pred             EEEECCCCCeEEcc-----------------------------------------------------cCCCCcCCeEECC
Confidence            66677665432110                                                     0111123456888


Q ss_pred             CCCEEEEeeC-C--CeEEEEECCCCceeeecccccCceeceEEEEECCCCCEEEEeeCC-C--cEEEEECCCCcEEEEEe
Q 021399          157 LNRTIISAGE-D--AIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLD-K--SAKLWDARTLELIKTYV  230 (313)
Q Consensus       157 ~~~~i~t~~~-d--~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d-g--~i~iwd~~~~~~~~~~~  230 (313)
                      +++.++..+. +  ..|+++|+.+++.. .+.. .+  .......|+|||+.|+..+.+ +  .|.+||+.+++. +.+.
T Consensus       297 Dg~~i~f~s~~~g~~~iy~~d~~~g~~~-~lt~-~~--~~~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~-~~lt  371 (430)
T PRK00178        297 DGRTLYFTSDRGGKPQIYKVNVNGGRAE-RVTF-VG--NYNARPRLSADGKTLVMVHRQDGNFHVAAQDLQRGSV-RILT  371 (430)
T ss_pred             CCCEEEEEECCCCCceEEEEECCCCCEE-Eeec-CC--CCccceEECCCCCEEEEEEccCCceEEEEEECCCCCE-EEcc
Confidence            8887766553 2  35778888776532 2221 11  223356799999998877653 3  478899988765 3333


Q ss_pred             cCCceeEEEeccCCCEEEEccc
Q 021399          231 TERPVNAVTMSPLLDHVVLGGG  252 (313)
Q Consensus       231 ~~~~~~~~~~~p~~~~~~~~~~  252 (313)
                      .........|+|++..++.+..
T Consensus       372 ~~~~~~~p~~spdg~~i~~~~~  393 (430)
T PRK00178        372 DTSLDESPSVAPNGTMLIYATR  393 (430)
T ss_pred             CCCCCCCceECCCCCEEEEEEe
Confidence            2222335689999998877654

>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]

Probab=99.47  E-value=1.6e-12  Score=110.90  Aligned_cols=197  Identities=18%  Similarity=0.221  Sum_probs=127.9

Q ss_pred             ccCCCEEEEeeCCCCeEEEeCCCCcEEEEe--cC--CCCceEEEEECCCCC-eEEEeeCCCcEEEEECCCCeEEEEecCC
Q 021399           19 NKDGDLLFSCAKDHTPTVWFADNGERLGTY--RG--HNGAVWCCDVSRDSM-TLITGSADQTAKLWNVETGAQLFTFNFD   93 (313)
Q Consensus        19 s~~g~~l~s~s~d~~i~iw~~~~~~~~~~~--~~--H~~~V~~~~~~~~~~-~l~s~s~D~~v~vWd~~~~~~~~~~~~~   93 (313)
                      .|++--|+.|=.-|.+.+.|....+..+-+  ..  -+..|+|+.|-|.+. +|+.+-.+|.+.++|.+-.     ... 
T Consensus       182 ~~~g~dllIGf~tGqvq~idp~~~~~sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~-----~~~-  255 (636)
T KOG2394|consen  182 TPKGLDLLIGFTTGQVQLIDPINFEVSKLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIV-----CGA-  255 (636)
T ss_pred             CCCCcceEEeeccCceEEecchhhHHHHhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeecccc-----ccC-
Confidence            355655666766778777765543221111  11  136799999988553 6677788999999986211     000 


Q ss_pred             CCeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEccCCCEEEEeeCCCeEEEE
Q 021399           94 SPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIW  173 (313)
Q Consensus        94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~t~~~d~~i~lw  173 (313)
                      .......+..++++.+.....                  .....++..+.-..+.|+..+|+|+|+++|+.+.||.+|||
T Consensus       256 t~p~~~~~k~~~~f~i~t~ks------------------k~~rNPv~~w~~~~g~in~f~FS~DG~~LA~VSqDGfLRvF  317 (636)
T KOG2394|consen  256 TAPSYQALKDGDQFAILTSKS------------------KKTRNPVARWHIGEGSINEFAFSPDGKYLATVSQDGFLRIF  317 (636)
T ss_pred             CCCcccccCCCCeeEEeeeec------------------cccCCccceeEeccccccceeEcCCCceEEEEecCceEEEe
Confidence            011111122233333322110                  00112333333345588999999999999999999999999


Q ss_pred             ECCCCceeeecccccCceeceEEEEECCCCCEEEEeeCCCcEEEEECCCCcEEEEEecCC-ceeEEEecc
Q 021399          174 DTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTER-PVNAVTMSP  242 (313)
Q Consensus       174 d~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~-~~~~~~~~p  242 (313)
                      |..+.+++....   ..-+...|++|||||++|++|+.|..|.+|.+...+.+..-+.+. =|..|+|.|
T Consensus       318 ~fdt~eLlg~mk---SYFGGLLCvcWSPDGKyIvtGGEDDLVtVwSf~erRVVARGqGHkSWVs~VaFDp  384 (636)
T KOG2394|consen  318 DFDTQELLGVMK---SYFGGLLCVCWSPDGKYIVTGGEDDLVTVWSFEERRVVARGQGHKSWVSVVAFDP  384 (636)
T ss_pred             eccHHHHHHHHH---hhccceEEEEEcCCccEEEecCCcceEEEEEeccceEEEeccccccceeeEeecc
Confidence            998766554332   244679999999999999999999999999999888776554333 377788886

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=99.47  E-value=1.1e-11  Score=97.58  Aligned_cols=100  Identities=19%  Similarity=0.332  Sum_probs=80.2

Q ss_pred             CCceEEEEEccCCCEEEEe--eCCCeEEEEECCCCceeeecccccCceeceEEEEECCCCCEEEEeeCC---CcEEEEEC
Q 021399          146 QGRINRAVWGPLNRTIISA--GEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLD---KSAKLWDA  220 (313)
Q Consensus       146 ~~~i~~~~~~~~~~~i~t~--~~d~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d---g~i~iwd~  220 (313)
                      .++|.+++|+|+++.|++.  ..+..|.+||++ .+.+..+     +...+..+.|+|+|++|++++.+   |.+.+||.
T Consensus        59 ~~~I~~~~WsP~g~~favi~g~~~~~v~lyd~~-~~~i~~~-----~~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~  132 (194)
T PF08662_consen   59 EGPIHDVAWSPNGNEFAVIYGSMPAKVTLYDVK-GKKIFSF-----GTQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDV  132 (194)
T ss_pred             CCceEEEEECcCCCEEEEEEccCCcccEEEcCc-ccEeEee-----cCCCceEEEECCCCCEEEEEEccCCCcEEEEEEC
Confidence            4579999999999987654  356789999997 4444443     24567889999999999998864   56999999


Q ss_pred             CCCcEEEEEecCCceeEEEeccCCCEEEEccc
Q 021399          221 RTLELIKTYVTERPVNAVTMSPLLDHVVLGGG  252 (313)
Q Consensus       221 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~  252 (313)
                      ++.+++.+..+. .+..++|+|+|.+++++..
T Consensus       133 ~~~~~i~~~~~~-~~t~~~WsPdGr~~~ta~t  163 (194)
T PF08662_consen  133 RKKKKISTFEHS-DATDVEWSPDGRYLATATT  163 (194)
T ss_pred             CCCEEeeccccC-cEEEEEEcCCCCEEEEEEe
Confidence            999988876554 4789999999999988754

>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.46  E-value=5.4e-11  Score=97.33  Aligned_cols=192  Identities=11%  Similarity=0.160  Sum_probs=132.7

Q ss_pred             EEccCCCEEEEeeCCCCeEEEeCCCCcEEEEecCCCCceEEEEECCCCCeEEEeeCCCcEEEEECCCCeEEEEecCC--C
Q 021399           17 KYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFNFD--S   94 (313)
Q Consensus        17 ~fs~~g~~l~s~s~d~~i~iw~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~v~vWd~~~~~~~~~~~~~--~   94 (313)
                      -|+..---|++..+-+.+++.+++.+..+..+. ...+|.++.++.  +.|+.+-.+. |.|+|+.+.+.+.++...  .
T Consensus        53 LFSSSLvaiV~~~qpr~Lkv~~~Kk~~~ICe~~-fpt~IL~VrmNr--~RLvV~Lee~-IyIydI~~MklLhTI~t~~~n  128 (391)
T KOG2110|consen   53 LFSSSLVAIVSIKQPRKLKVVHFKKKTTICEIF-FPTSILAVRMNR--KRLVVCLEES-IYIYDIKDMKLLHTIETTPPN  128 (391)
T ss_pred             ecccceeEEEecCCCceEEEEEcccCceEEEEe-cCCceEEEEEcc--ceEEEEEccc-EEEEecccceeehhhhccCCC
Confidence            355433333333333457888888777665554 356788888874  4677766654 999999999988776543  3


Q ss_pred             CeeEEEeecC--CeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEccCCCEEEEeeCCCe-EE
Q 021399           95 PARSVDFAVG--DKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAI-VR  171 (313)
Q Consensus        95 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~t~~~d~~-i~  171 (313)
                      +...+++++.  +..++...+.   ..+.+.+++..      .-.++..+..|.+.+..++|+++|..+||+++.|+ ||
T Consensus       129 ~~gl~AlS~n~~n~ylAyp~s~---t~GdV~l~d~~------nl~~v~~I~aH~~~lAalafs~~G~llATASeKGTVIR  199 (391)
T KOG2110|consen  129 PKGLCALSPNNANCYLAYPGST---TSGDVVLFDTI------NLQPVNTINAHKGPLAALAFSPDGTLLATASEKGTVIR  199 (391)
T ss_pred             ccceEeeccCCCCceEEecCCC---CCceEEEEEcc------cceeeeEEEecCCceeEEEECCCCCEEEEeccCceEEE
Confidence            3334444442  2233322111   12222333221      23567788899999999999999999999999986 78


Q ss_pred             EEECCCCceeeecccccCceeceEEEEECCCCCEEEEeeCCCcEEEEECCC
Q 021399          172 IWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDART  222 (313)
Q Consensus       172 lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~dg~i~iwd~~~  222 (313)
                      ++.+.+++.+.++....- ...|.+++|+|++.+|.+.|..++|.+|.++.
T Consensus       200 Vf~v~~G~kl~eFRRG~~-~~~IySL~Fs~ds~~L~~sS~TeTVHiFKL~~  249 (391)
T KOG2110|consen  200 VFSVPEGQKLYEFRRGTY-PVSIYSLSFSPDSQFLAASSNTETVHIFKLEK  249 (391)
T ss_pred             EEEcCCccEeeeeeCCce-eeEEEEEEECCCCCeEEEecCCCeEEEEEecc
Confidence            999999998887754332 56788999999999999999999999998764

>KOG2321 consensus WD40 repeat protein [General function prediction only]

Probab=99.44  E-value=1.9e-11  Score=105.25  Aligned_cols=239  Identities=18%  Similarity=0.249  Sum_probs=147.8

Q ss_pred             CCCCceEEEEECCCCCeE-EEeeCCCcEEEEECCCCeEEEEecCCCCeeEEEeecC--CeEEEEECCCceeccccceee-
Q 021399           50 GHNGAVWCCDVSRDSMTL-ITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVG--DKLAVITTDPFMELNSAIHVK-  125 (313)
Q Consensus        50 ~H~~~V~~~~~~~~~~~l-~s~s~D~~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~-  125 (313)
                      .|...-+.+..+|||+++ +||-.-..|++||+..-...+.-.....+..+....+  .+.+.+..+..+.+......+ 
T Consensus        49 e~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSLKFERhlDae~V~feiLsDD~SK~v~L~~DR~IefHak~G~hy  128 (703)
T KOG2321|consen   49 EMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSLKFERHLDAEVVDFEILSDDYSKSVFLQNDRTIEFHAKYGRHY  128 (703)
T ss_pred             CCccccceeEecCCCcEEEEecccCCceEEEEcccceeeeeecccccceeEEEeccchhhheEeecCceeeehhhcCeee
Confidence            466677889999999965 5666789999999876544332222222222222111  233333333322221111000 


Q ss_pred             ---------eeeeCCCC-----------------CCCceEEEecCCCCceEEEEEccCCCEEEEeeCCCeEEEEECCCCc
Q 021399          126 ---------RIARDPAD-----------------QGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGK  179 (313)
Q Consensus       126 ---------~~~~~~~~-----------------~~~~~~~~~~~~~~~i~~~~~~~~~~~i~t~~~d~~i~lwd~~~~~  179 (313)
                               ++......                 ..+..+..++...+.++.+..++....|++|+.+|.|..||.++..
T Consensus       129 ~~RIP~~GRDm~y~~~scDly~~gsg~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~hgLla~Gt~~g~VEfwDpR~ks  208 (703)
T KOG2321|consen  129 RTRIPKFGRDMKYHKPSCDLYLVGSGSEVYRLNLEQGRFLNPFETDSGELNVVSINEEHGLLACGTEDGVVEFWDPRDKS  208 (703)
T ss_pred             eeecCcCCccccccCCCccEEEeecCcceEEEEccccccccccccccccceeeeecCccceEEecccCceEEEecchhhh
Confidence                     00000000                 0112222233334678888899998999999999999999998877


Q ss_pred             eeeeccccc---Ccee-----ceEEEEECCCCCEEEEeeCCCcEEEEECCCCcEEEEEec--CCceeEEEeccCCCEEEE
Q 021399          180 LLKESDKET---GHKK-----TITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVT--ERPVNAVTMSPLLDHVVL  249 (313)
Q Consensus       180 ~~~~~~~~~---~h~~-----~v~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~--~~~~~~~~~~p~~~~~~~  249 (313)
                      .+..+....   .|.+     .|+++.|+.+|-.++.|..+|.+.|||+++.+++..-.+  .-++..+.|.+..++-. 
T Consensus       209 rv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~kdh~~e~pi~~l~~~~~~~q~~-  287 (703)
T KOG2321|consen  209 RVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLVKDHGYELPIKKLDWQDTDQQNK-  287 (703)
T ss_pred             hheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCceeecccCCccceeeecccccCCCce-
Confidence            665544322   2333     499999999999999999999999999999888765544  45788899977633222 


Q ss_pred             cccccCceeEeeccCCCceeeeeeehhhhhhhccccccccceeEEEECCCCCe
Q 021399          250 GGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKR  302 (313)
Q Consensus       250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~fspdgk~  302 (313)
                              ++..|.+    .+++||..+++....+.- ...++++.+=|++=.
T Consensus       288 --------v~S~Dk~----~~kiWd~~~Gk~~asiEp-t~~lND~C~~p~sGm  327 (703)
T KOG2321|consen  288 --------VVSMDKR----ILKIWDECTGKPMASIEP-TSDLNDFCFVPGSGM  327 (703)
T ss_pred             --------EEecchH----HhhhcccccCCceeeccc-cCCcCceeeecCCce
Confidence                    2222322    357788877777655432 445888888888543

>PRK01029 tolB translocation protein TolB; Provisional

Probab=99.41  E-value=9.8e-11  Score=103.63  Aligned_cols=197  Identities=14%  Similarity=0.071  Sum_probs=113.5

Q ss_pred             cccccccccceeEEEEccCCCE--E-EEeeCCCC--eEEEeCCCCcEEEEecCCCCceEEEEECCCCCeEEEee-CCC--
Q 021399            3 PILMKGHERPLTYLKYNKDGDL--L-FSCAKDHT--PTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGS-ADQ--   74 (313)
Q Consensus         3 ~~~l~~h~~~v~~~~fs~~g~~--l-~s~s~d~~--i~iw~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s-~D~--   74 (313)
                      |+.|..+......=+|||||+.  + +....++.  |.+.++.+++.. .+....+.....+|+|||+.++-.+ .+|  
T Consensus       177 ~~~lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~-~lt~~~g~~~~p~wSPDG~~Laf~s~~~g~~  255 (428)
T PRK01029        177 LRPLTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGK-KILALQGNQLMPTFSPRKKLLAFISDRYGNP  255 (428)
T ss_pred             ceEcccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCce-EeecCCCCccceEECCCCCEEEEEECCCCCc
Confidence            4445555555667799999975  3 24444444  555577766542 3333444556789999998776544 223  


Q ss_pred             --cEEEEECCCCeEEEEecCCCCeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEE
Q 021399           75 --TAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRA  152 (313)
Q Consensus        75 --~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~  152 (313)
                        .+..|++..+..                                                 +.......+..+.....
T Consensus       256 di~~~~~~~~~g~~-------------------------------------------------g~~~~lt~~~~~~~~~p  286 (428)
T PRK01029        256 DLFIQSFSLETGAI-------------------------------------------------GKPRRLLNEAFGTQGNP  286 (428)
T ss_pred             ceeEEEeecccCCC-------------------------------------------------CcceEeecCCCCCcCCe
Confidence              223344332100                                                 00000011111223456


Q ss_pred             EEccCCCEEEEee-CCCeEEEE--ECCC-CceeeecccccCceeceEEEEECCCCCEEEEeeCC---CcEEEEECCCCcE
Q 021399          153 VWGPLNRTIISAG-EDAIVRIW--DTET-GKLLKESDKETGHKKTITSLAKAADGSHFLTGSLD---KSAKLWDARTLEL  225 (313)
Q Consensus       153 ~~~~~~~~i~t~~-~d~~i~lw--d~~~-~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d---g~i~iwd~~~~~~  225 (313)
                      .|+|+|+.|+..+ .++...||  ++.. +.....+.   .+...+....|+|||+.|+..+.+   ..|.+||+.+++.
T Consensus       287 ~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt---~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~  363 (428)
T PRK01029        287 SFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLT---KKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRD  363 (428)
T ss_pred             EECCCCCEEEEEECCCCCceEEEEECcccccceEEec---cCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCe
Confidence            7999999887665 45654555  4432 22222222   233456778999999998876653   3689999998876


Q ss_pred             EEEEecCCceeEEEeccCCCEEEEccc
Q 021399          226 IKTYVTERPVNAVTMSPLLDHVVLGGG  252 (313)
Q Consensus       226 ~~~~~~~~~~~~~~~~p~~~~~~~~~~  252 (313)
                      ..............|+|++..++....
T Consensus       364 ~~Lt~~~~~~~~p~wSpDG~~L~f~~~  390 (428)
T PRK01029        364 YQLTTSPENKESPSWAIDSLHLVYSAG  390 (428)
T ss_pred             EEccCCCCCccceEECCCCCEEEEEEC
Confidence            433323345677899999998876543

>KOG1334 consensus WD40 repeat protein [General function prediction only]

Probab=99.41  E-value=3.1e-12  Score=107.95  Aligned_cols=243  Identities=19%  Similarity=0.293  Sum_probs=143.8

Q ss_pred             cccccccceeEEEEccCCCEEEEeeCCCCeEEEeCCCCcEEEEec-CCCCceEEEEECCC--CCeEEEeeCCCcEEEEEC
Q 021399            5 LMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYR-GHNGAVWCCDVSRD--SMTLITGSADQTAKLWNV   81 (313)
Q Consensus         5 ~l~~h~~~v~~~~fs~~g~~l~s~s~d~~i~iw~~~~~~~~~~~~-~H~~~V~~~~~~~~--~~~l~s~s~D~~v~vWd~   81 (313)
                      .|..|.+-|..|.|...|..|+|||.|..|.+||...+..+..|. ||...|+.-.|-|.  .+.+++++.||.|++=.+
T Consensus       137 kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~s~i  216 (559)
T KOG1334|consen  137 KLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRVSEI  216 (559)
T ss_pred             cccCCCCccceeeecccCceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccCceeeeee
Confidence            477899999999999999999999999999999999887766554 57777766666553  346677777777776554


Q ss_pred             CC-CeE------------EEEecC--CC-----------CeeEEEeec---CCeEEEEECCCceeccccceeeeeeeCCC
Q 021399           82 ET-GAQ------------LFTFNF--DS-----------PARSVDFAV---GDKLAVITTDPFMELNSAIHVKRIARDPA  132 (313)
Q Consensus        82 ~~-~~~------------~~~~~~--~~-----------~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  132 (313)
                      .. +.+            +.++..  ..           .+..++...   ..++..-..+    ....+.+..++-++.
T Consensus       217 ~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~----~~~~v~L~~Ia~~P~  292 (559)
T KOG1334|consen  217 LETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREAD----EKERVGLYTIAVDPR  292 (559)
T ss_pred             ccccceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccC----CccceeeeeEecCCC
Confidence            21 111            011110  00           000111100   0111100000    000011111111111


Q ss_pred             CC------------------------CCceEE------EecCCCCceEEEEEccCCCEEEEeeCCCeEEEEECCCCc---
Q 021399          133 DQ------------------------GGESVL------ILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGK---  179 (313)
Q Consensus       133 ~~------------------------~~~~~~------~~~~~~~~i~~~~~~~~~~~i~t~~~d~~i~lwd~~~~~---  179 (313)
                      ..                        ....+.      ......-.|++++++.++.-++.+-.|-.|+++....+.   
T Consensus       293 nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~~~G~~  372 (559)
T KOG1334|consen  293 NTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDIYLFNKSMGDGSE  372 (559)
T ss_pred             CccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeecccceEEeccccccCCC
Confidence            00                        000000      001122357899999777777778889999999543221   


Q ss_pred             ---------eeeecccccCce--eceEEE-EECCCCCEEEEeeCCCcEEEEECCCCcEEEEEec-CCceeEEEeccCCCE
Q 021399          180 ---------LLKESDKETGHK--KTITSL-AKAADGSHFLTGSLDKSAKLWDARTLELIKTYVT-ERPVNAVTMSPLLDH  246 (313)
Q Consensus       180 ---------~~~~~~~~~~h~--~~v~~~-~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~-~~~~~~~~~~p~~~~  246 (313)
                               ..+++.  .+|.  ..|..+ .|-|...+++|||.-|.|.||+-.+++.++-+.. ...|+|+.=+|....
T Consensus       373 p~~~s~~~~~~k~vY--KGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~eii~~MegDr~VVNCLEpHP~~Pv  450 (559)
T KOG1334|consen  373 PDPSSPREQYVKRVY--KGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTGEIIRFMEGDRHVVNCLEPHPHLPV  450 (559)
T ss_pred             CCCCcchhhccchhh--cccccccccceeeeccCccceEEecCccceEEEEecchhHHHHHhhcccceEeccCCCCCCch
Confidence                     111111  2454  346666 4678899999999999999999999988766543 347899999999887


Q ss_pred             EEEcccc
Q 021399          247 VVLGGGQ  253 (313)
Q Consensus       247 ~~~~~~~  253 (313)
                      ++.+|-+
T Consensus       451 LAsSGid  457 (559)
T KOG1334|consen  451 LASSGID  457 (559)
T ss_pred             hhccCCc
Confidence            7666543

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=99.41  E-value=1.8e-10  Score=102.41  Aligned_cols=205  Identities=15%  Similarity=0.069  Sum_probs=125.3

Q ss_pred             CCeEEEeCCCCcEEEEecCCCCceEEEEECCCCCeEEEeeCC---CcEEEEECCCCeEEEEecCCCCeeEEEeecCCeEE
Q 021399           32 HTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSAD---QTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLA  108 (313)
Q Consensus        32 ~~i~iw~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D---~~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  108 (313)
                      ..|.++|.+ +.....+..+...+.+.+|+|||+.++.++.+   ..|++||+.+++......                 
T Consensus       170 ~~l~~~d~~-g~~~~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~~~~-----------------  231 (417)
T TIGR02800       170 YELQVADYD-GANPQTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREKVAS-----------------  231 (417)
T ss_pred             ceEEEEcCC-CCCCEEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEEeec-----------------
Confidence            356677764 33345566677789999999999988776543   478899987764321110                 


Q ss_pred             EEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEccCCCEEEE-eeCC--CeEEEEECCCCceeeecc
Q 021399          109 VITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIIS-AGED--AIVRIWDTETGKLLKESD  185 (313)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~t-~~~d--~~i~lwd~~~~~~~~~~~  185 (313)
                                                          +.+......|+|+++.|+. .+.+  ..|++||+.++... .+.
T Consensus       232 ------------------------------------~~~~~~~~~~spDg~~l~~~~~~~~~~~i~~~d~~~~~~~-~l~  274 (417)
T TIGR02800       232 ------------------------------------FPGMNGAPAFSPDGSKLAVSLSKDGNPDIYVMDLDGKQLT-RLT  274 (417)
T ss_pred             ------------------------------------CCCCccceEECCCCCEEEEEECCCCCccEEEEECCCCCEE-ECC
Confidence                                                1112234568888887764 3333  46889998876542 222


Q ss_pred             cccCceeceEEEEECCCCCEEEEeeCC-C--cEEEEECCCCcEEEEEecCCceeEEEeccCCCEEEEcccccC-ceeEee
Q 021399          186 KETGHKKTITSLAKAADGSHFLTGSLD-K--SAKLWDARTLELIKTYVTERPVNAVTMSPLLDHVVLGGGQDA-SAVTTT  261 (313)
Q Consensus       186 ~~~~h~~~v~~~~~s~~~~~l~s~s~d-g--~i~iwd~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~-~~~~~~  261 (313)
                         .+........|+|||+.|+..+.. +  .|.++|+++++..............+|+|++..++.+..... ..++.+
T Consensus       275 ---~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~~l~~~~~~~~~~~~spdg~~i~~~~~~~~~~~i~~~  351 (417)
T TIGR02800       275 ---NGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEVRRLTFRGGYNASPSWSPDGDLIAFVHREGGGFNIAVM  351 (417)
T ss_pred             ---CCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeecCCCCccCeEECCCCCEEEEEEccCCceEEEEE
Confidence               233344567899999988776643 3  588889887765433333445667889999998877654321 123344


Q ss_pred             ccCCCceeeeeeehhhhhhhccccccccceeEEEECCCCCeeEEEEE
Q 021399          262 DHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKRYGFLLL  308 (313)
Q Consensus       262 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~fspdgk~~~~~~~  308 (313)
                      |...+..             ..+.. .......+|+|||+.++|...
T Consensus       352 d~~~~~~-------------~~l~~-~~~~~~p~~spdg~~l~~~~~  384 (417)
T TIGR02800       352 DLDGGGE-------------RVLTD-TGLDESPSFAPNGRMILYATT  384 (417)
T ss_pred             eCCCCCe-------------EEccC-CCCCCCceECCCCCEEEEEEe
Confidence            4322111             11111 122345689999999888654

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>PRK00178 tolB translocation protein TolB; Provisional

Probab=99.38  E-value=3.4e-10  Score=100.93  Aligned_cols=205  Identities=14%  Similarity=0.025  Sum_probs=122.1

Q ss_pred             CeEEEeCCCCcEEEEecCCCCceEEEEECCCCCeEEEeeCC---CcEEEEECCCCeEEEEecCCCCeeEEEeecCCeEEE
Q 021399           33 TPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSAD---QTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAV  109 (313)
Q Consensus        33 ~i~iw~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D---~~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  109 (313)
                      .|.++|.+.+. ...+..+...+....|+|||+.++..+.+   ..|.+||+.+++......                  
T Consensus       180 ~l~~~d~~g~~-~~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~l~~------------------  240 (430)
T PRK00178        180 TLQRSDYDGAR-AVTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQITN------------------  240 (430)
T ss_pred             EEEEECCCCCC-ceEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEEccC------------------
Confidence            36666766444 34565677789999999999987665533   357788887664321100                  


Q ss_pred             EECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEccCCCEEEE-eeCCC--eEEEEECCCCceeeeccc
Q 021399          110 ITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIIS-AGEDA--IVRIWDTETGKLLKESDK  186 (313)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~t-~~~d~--~i~lwd~~~~~~~~~~~~  186 (313)
                                                         ..+......|+|+|+.++. ...++  .|++||+.++... .+. 
T Consensus       241 -----------------------------------~~g~~~~~~~SpDG~~la~~~~~~g~~~Iy~~d~~~~~~~-~lt-  283 (430)
T PRK00178        241 -----------------------------------FEGLNGAPAWSPDGSKLAFVLSKDGNPEIYVMDLASRQLS-RVT-  283 (430)
T ss_pred             -----------------------------------CCCCcCCeEECCCCCEEEEEEccCCCceEEEEECCCCCeE-Ecc-
Confidence                                               0011223568899887764 43344  6888899876543 232 


Q ss_pred             ccCceeceEEEEECCCCCEEEEeeC-CC--cEEEEECCCCcEEEEEecCCceeEEEeccCCCEEEEcccccCceeEeecc
Q 021399          187 ETGHKKTITSLAKAADGSHFLTGSL-DK--SAKLWDARTLELIKTYVTERPVNAVTMSPLLDHVVLGGGQDASAVTTTDH  263 (313)
Q Consensus       187 ~~~h~~~v~~~~~s~~~~~l~s~s~-dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~  263 (313)
                        .+........|+|||+.|+..+. ++  .|.++|+.+++..+...........+|+|+++.++.....++        
T Consensus       284 --~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~lt~~~~~~~~~~~Spdg~~i~~~~~~~~--------  353 (430)
T PRK00178        284 --NHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAERVTFVGNYNARPRLSADGKTLVMVHRQDG--------  353 (430)
T ss_pred             --cCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeecCCCCccceEECCCCCEEEEEEccCC--------
Confidence              23444566789999998876654 33  577788888775333222222345689999998877643322        


Q ss_pred             CCCceeeeeeehhhhhhhccccccccceeEEEECCCCCeeEEEEE
Q 021399          264 RAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKRYGFLLL  308 (313)
Q Consensus       264 ~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~fspdgk~~~~~~~  308 (313)
                         .+.+..+|..+++. ..+ .+........|+|||+.+.|...
T Consensus       354 ---~~~l~~~dl~tg~~-~~l-t~~~~~~~p~~spdg~~i~~~~~  393 (430)
T PRK00178        354 ---NFHVAAQDLQRGSV-RIL-TDTSLDESPSVAPNGTMLIYATR  393 (430)
T ss_pred             ---ceEEEEEECCCCCE-EEc-cCCCCCCCceECCCCCEEEEEEe
Confidence               12233344332221 111 11112234589999999988753

>KOG3881 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.37  E-value=1.4e-10  Score=95.59  Aligned_cols=221  Identities=17%  Similarity=0.248  Sum_probs=150.6

Q ss_pred             cccccceeEEEEccCCCEEEEeeCCCCeEEEeCCCCc----EEEEecCCCCceEEEEECCCC-CeEEEeeCC--CcEEEE
Q 021399            7 KGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGE----RLGTYRGHNGAVWCCDVSRDS-MTLITGSAD--QTAKLW   79 (313)
Q Consensus         7 ~~h~~~v~~~~fs~~g~~l~s~s~d~~i~iw~~~~~~----~~~~~~~H~~~V~~~~~~~~~-~~l~s~s~D--~~v~vW   79 (313)
                      ...+++|..+...  ...|++|-.+|.+.+|..+.+.    .+..+..| ..+..+.-++.. ..+++||..  ..+++|
T Consensus       102 ~l~~~~I~gl~~~--dg~Litc~~sG~l~~~~~k~~d~hss~l~~la~g-~g~~~~r~~~~~p~Iva~GGke~~n~lkiw  178 (412)
T KOG3881|consen  102 SLGTKSIKGLKLA--DGTLITCVSSGNLQVRHDKSGDLHSSKLIKLATG-PGLYDVRQTDTDPYIVATGGKENINELKIW  178 (412)
T ss_pred             ccccccccchhhc--CCEEEEEecCCcEEEEeccCCccccccceeeecC-CceeeeccCCCCCceEecCchhcccceeee
Confidence            3445555555443  4478888999999999887442    22233333 345555545443 466779988  889999


Q ss_pred             ECCCCeEEEEecC-CC-------C--eeEEEeecC---CeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCC
Q 021399           80 NVETGAQLFTFNF-DS-------P--ARSVDFAVG---DKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQ  146 (313)
Q Consensus        80 d~~~~~~~~~~~~-~~-------~--~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  146 (313)
                      |++..+.++.... ..       |  +..+.|.++   .+++.++.      +...++++..     ....++..+.--.
T Consensus       179 dle~~~qiw~aKNvpnD~L~LrVPvW~tdi~Fl~g~~~~~fat~T~------~hqvR~YDt~-----~qRRPV~~fd~~E  247 (412)
T KOG3881|consen  179 DLEQSKQIWSAKNVPNDRLGLRVPVWITDIRFLEGSPNYKFATITR------YHQVRLYDTR-----HQRRPVAQFDFLE  247 (412)
T ss_pred             ecccceeeeeccCCCCccccceeeeeeccceecCCCCCceEEEEec------ceeEEEecCc-----ccCcceeEecccc
Confidence            9998877665421 11       1  123334444   12222211      1112222221     3456777777778


Q ss_pred             CceEEEEEccCCCEEEEeeCCCeEEEEECCCCceeeecccccCceeceEEEEECCCCCEEEEeeCCCcEEEEECCCCcEE
Q 021399          147 GRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELI  226 (313)
Q Consensus       147 ~~i~~~~~~~~~~~i~t~~~d~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~  226 (313)
                      .++.++...|.++.|.+|..-+.+..||.+.++++....  .+..+.++++-.+|.+.++++++.|..+||+|+++.+++
T Consensus       248 ~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~~~--kg~tGsirsih~hp~~~~las~GLDRyvRIhD~ktrkll  325 (412)
T KOG3881|consen  248 NPISSTGLTPSGNFIYTGNTKGQLAKFDLRGGKLLGCGL--KGITGSIRSIHCHPTHPVLASCGLDRYVRIHDIKTRKLL  325 (412)
T ss_pred             CcceeeeecCCCcEEEEecccchhheecccCceeecccc--CCccCCcceEEEcCCCceEEeeccceeEEEeecccchhh
Confidence            889999999999999999999999999999988776522  356789999999999999999999999999999997777


Q ss_pred             EEEecCCceeEEEeccC
Q 021399          227 KTYVTERPVNAVTMSPL  243 (313)
Q Consensus       227 ~~~~~~~~~~~~~~~p~  243 (313)
                      ........++++-+.++
T Consensus       326 ~kvYvKs~lt~il~~~~  342 (412)
T KOG3881|consen  326 HKVYVKSRLTFILLRDD  342 (412)
T ss_pred             hhhhhhccccEEEecCC
Confidence            66555566777777554

>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]

Probab=99.37  E-value=9.5e-12  Score=113.74  Aligned_cols=150  Identities=24%  Similarity=0.342  Sum_probs=122.1

Q ss_pred             EEEccCCCEEEEeeCCCCeEEEeCCCCcEEEEecCCCCceEEEEECCCCCeEEEeeCCCcEEEEECCCCeEEEEecCCCC
Q 021399           16 LKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFNFDSP   95 (313)
Q Consensus        16 ~~fs~~g~~l~s~s~d~~i~iw~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~v~vWd~~~~~~~~~~~~~~~   95 (313)
                      +.++++--++++|+.=+.|.+|+..-...-..+.||++.++++.++-||.+++|.|.|.++|+|++++.+...       
T Consensus       139 ~g~s~~~~~i~~gsv~~~iivW~~~~dn~p~~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~-------  211 (967)
T KOG0974|consen  139 IGDSAEELYIASGSVFGEIIVWKPHEDNKPIRLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLG-------  211 (967)
T ss_pred             EeccCcEEEEEeccccccEEEEeccccCCcceecccCCceEEEEEccCCcEEEEEecCcceeeeecccccccC-------
Confidence            4567777899999999999999877333333689999999999999999999999999999999998865321       


Q ss_pred             eeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEccCCCEEEEeeCCCeEEEEEC
Q 021399           96 ARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDT  175 (313)
Q Consensus        96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~t~~~d~~i~lwd~  175 (313)
                                                                  ...-+|..++..+++.|.  +++|+++|.+.++|+.
T Consensus       212 --------------------------------------------~~~fgHsaRvw~~~~~~n--~i~t~gedctcrvW~~  245 (967)
T KOG0974|consen  212 --------------------------------------------CTGFGHSARVWACCFLPN--RIITVGEDCTCRVWGV  245 (967)
T ss_pred             --------------------------------------------cccccccceeEEEEeccc--eeEEeccceEEEEEec
Confidence                                                        122468888999999997  8999999999999976


Q ss_pred             CCCceeeecccccCc-eeceEEEEECCCCCEEEEeeCCCcEEEEECCC
Q 021399          176 ETGKLLKESDKETGH-KKTITSLAKAADGSHFLTGSLDKSAKLWDART  222 (313)
Q Consensus       176 ~~~~~~~~~~~~~~h-~~~v~~~~~s~~~~~l~s~s~dg~i~iwd~~~  222 (313)
                      +- ..+..+.   .| ...+..++..++...++|++.|+.+++||+..
T Consensus       246 ~~-~~l~~y~---~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~~  289 (967)
T KOG0974|consen  246 NG-TQLEVYD---EHSGKGIWKIAVPIGVIIKVTGGNDSTLKLWDLNG  289 (967)
T ss_pred             cc-ceehhhh---hhhhcceeEEEEcCCceEEEeeccCcchhhhhhhc
Confidence            53 3344433   33 35689999999999999999999999999764

>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]

Probab=99.35  E-value=1.2e-10  Score=103.87  Aligned_cols=207  Identities=18%  Similarity=0.231  Sum_probs=133.4

Q ss_pred             CCeEEEeCCCC-cEEEEecCCCCceEEEEECCCC-CeEEEeeCCCcEEEEECCCCeEEEEecCCCCeeEEEeecCCeEEE
Q 021399           32 HTPTVWFADNG-ERLGTYRGHNGAVWCCDVSRDS-MTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAV  109 (313)
Q Consensus        32 ~~i~iw~~~~~-~~~~~~~~H~~~V~~~~~~~~~-~~l~s~s~D~~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  109 (313)
                      +.+.||++++. .....+.. ..+|.|+.|+|.. ++++.|..+|.|-+||++.+....       ...           
T Consensus       222 ~~~~vW~~~~p~~Pe~~~~~-~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~-------~s~-----------  282 (555)
T KOG1587|consen  222 GVLLVWSLKNPNTPELVLES-PSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTP-------PSG-----------  282 (555)
T ss_pred             ceEEEEecCCCCCceEEEec-CCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCC-------Ccc-----------
Confidence            46899999877 44445544 6789999999854 578888899999999998654210       000           


Q ss_pred             EECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEccC--CCEEEEeeCCCeEEEEECCCCceeeec---
Q 021399          110 ITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPL--NRTIISAGEDAIVRIWDTETGKLLKES---  184 (313)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~~~i~t~~~d~~i~lwd~~~~~~~~~~---  184 (313)
                                                  .......|..++..+.|..+  ...|++++.||.|..|+++.-.+....   
T Consensus       283 ----------------------------ls~~~~sh~~~v~~vvW~~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~  334 (555)
T KOG1587|consen  283 ----------------------------LSALEVSHSEPVTAVVWLQNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLL  334 (555)
T ss_pred             ----------------------------cccccccCCcCeEEEEEeccCCCCceEEEecCCcEeeeeccccccchhhccc
Confidence                                        00111235556666666533  244899999999999987653321111   


Q ss_pred             ccc------cCceeceEEEEECC-CCCEEEEeeCCCcEEEEE---CCCCc-E----EEE-EecCCceeEEEeccCCCEEE
Q 021399          185 DKE------TGHKKTITSLAKAA-DGSHFLTGSLDKSAKLWD---ARTLE-L----IKT-YVTERPVNAVTMSPLLDHVV  248 (313)
Q Consensus       185 ~~~------~~h~~~v~~~~~s~-~~~~l~s~s~dg~i~iwd---~~~~~-~----~~~-~~~~~~~~~~~~~p~~~~~~  248 (313)
                      ...      ......+++++|.+ +-..++.|+.+|.|.-=+   .+... .    ... ..+..+++++.++|.+.-++
T Consensus       335 ~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~f  414 (555)
T KOG1587|consen  335 ESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNF  414 (555)
T ss_pred             ccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCcccccccccccccccccCcceEeeecCCCcccee
Confidence            000      01224578888876 445689999999987633   22222 1    111 13567899999999999888


Q ss_pred             EcccccCceeEeeccCCCceeeeeeehh-hhhhhccccccccceeEEEECCC
Q 021399          249 LGGGQDASAVTTTDHRAGKFEAKFFDKI-LQEEIGGVKGHFGPINALAFNPD  299 (313)
Q Consensus       249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~h~~~V~~~~fspd  299 (313)
                      .++|+..              +++|... ...++-.+..+...|++++|||.
T Consensus       415 ls~gDW~--------------vriWs~~~~~~Pl~~~~~~~~~v~~vaWSpt  452 (555)
T KOG1587|consen  415 LSVGDWT--------------VRIWSEDVIASPLLSLDSSPDYVTDVAWSPT  452 (555)
T ss_pred             eeeccce--------------eEeccccCCCCcchhhhhccceeeeeEEcCc
Confidence            8877332              3455543 33444445567778999999998

>KOG2321 consensus WD40 repeat protein [General function prediction only]

Probab=99.34  E-value=4.8e-11  Score=102.88  Aligned_cols=193  Identities=16%  Similarity=0.216  Sum_probs=140.9

Q ss_pred             EEEEccCCCEEEEeeCCCCeEEEeCCCCcEEEEecCCCCceEEEEECCCCCeEEEeeCCCcEEEEECCCCeEEEEecCCC
Q 021399           15 YLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFNFDS   94 (313)
Q Consensus        15 ~~~fs~~g~~l~s~s~d~~i~iw~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~v~vWd~~~~~~~~~~~~~~   94 (313)
                      .++++.-..=|+.++....|+-.+++.|+.+..|.--.+.++++..++...+|+.|+.||.|..||.++...+.++....
T Consensus       138 Dm~y~~~scDly~~gsg~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~hgLla~Gt~~g~VEfwDpR~ksrv~~l~~~~  217 (703)
T KOG2321|consen  138 DMKYHKPSCDLYLVGSGSEVYRLNLEQGRFLNPFETDSGELNVVSINEEHGLLACGTEDGVVEFWDPRDKSRVGTLDAAS  217 (703)
T ss_pred             cccccCCCccEEEeecCcceEEEEccccccccccccccccceeeeecCccceEEecccCceEEEecchhhhhheeeeccc
Confidence            35555333334445555677778999999998898888999999999999999999999999999998766544332211


Q ss_pred             CeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEccCCCEEEEeeCCCeEEEEE
Q 021399           95 PARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWD  174 (313)
Q Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~t~~~d~~i~lwd  174 (313)
                      .+.+                               .+.          ......++.+.|..+|-.+++|..+|.+.|+|
T Consensus       218 ~v~s-------------------------------~pg----------~~~~~svTal~F~d~gL~~aVGts~G~v~iyD  256 (703)
T KOG2321|consen  218 SVNS-------------------------------HPG----------GDAAPSVTALKFRDDGLHVAVGTSTGSVLIYD  256 (703)
T ss_pred             ccCC-------------------------------Ccc----------ccccCcceEEEecCCceeEEeeccCCcEEEEE
Confidence            1000                               000          00112467788888888899999999999999


Q ss_pred             CCCCceeeecccccCceeceEEEEECCC--CCEEEEeeCCCcEEEEECCCCcEEEEEecCCceeEEEeccCCCEEEEcc
Q 021399          175 TETGKLLKESDKETGHKKTITSLAKAAD--GSHFLTGSLDKSAKLWDARTLELIKTYVTERPVNAVTMSPLLDHVVLGG  251 (313)
Q Consensus       175 ~~~~~~~~~~~~~~~h~~~v~~~~~s~~--~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~  251 (313)
                      +++.+++..-.  .+..-.|..+.|.+.  ++.++|.. ...++|||-.+++....+.....++.+|+-|.+..++++-
T Consensus       257 LRa~~pl~~kd--h~~e~pi~~l~~~~~~~q~~v~S~D-k~~~kiWd~~~Gk~~asiEpt~~lND~C~~p~sGm~f~An  332 (703)
T KOG2321|consen  257 LRASKPLLVKD--HGYELPIKKLDWQDTDQQNKVVSMD-KRILKIWDECTGKPMASIEPTSDLNDFCFVPGSGMFFTAN  332 (703)
T ss_pred             cccCCceeecc--cCCccceeeecccccCCCceEEecc-hHHhhhcccccCCceeeccccCCcCceeeecCCceEEEec
Confidence            99988765433  234567888888665  44455543 3568999999999998887777899999999998888763

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=99.33  E-value=7.7e-09  Score=87.80  Aligned_cols=225  Identities=10%  Similarity=0.084  Sum_probs=134.1

Q ss_pred             EccCCCEEEEeeC----------CCCeEEEeCCCCcEEEEecCCCC-------ceEEEEECCCCCeEEEee--CCCcEEE
Q 021399           18 YNKDGDLLFSCAK----------DHTPTVWFADNGERLGTYRGHNG-------AVWCCDVSRDSMTLITGS--ADQTAKL   78 (313)
Q Consensus        18 fs~~g~~l~s~s~----------d~~i~iw~~~~~~~~~~~~~H~~-------~V~~~~~~~~~~~l~s~s--~D~~v~v   78 (313)
                      +||||+.|+.+..          +..|.+||.++.+.+.++.--..       .-...+++|||++++...  .+..|-+
T Consensus        53 ~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~V  132 (352)
T TIGR02658        53 VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQFSPSPAVGV  132 (352)
T ss_pred             ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhccCccceEEECCCCCEEEEecCCCCCEEEE
Confidence            8999998888776          78899999999999988864222       234678999999887655  3799999


Q ss_pred             EECCCCeEEEEecCCCCeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCC-ceEEEecCCCCce-EEEEEcc
Q 021399           79 WNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGG-ESVLILKGPQGRI-NRAVWGP  156 (313)
Q Consensus        79 Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~i-~~~~~~~  156 (313)
                      .|+.+++.+..+........+-.. .+.+.+...+...        ..+..+...... .....+.+...++ ..-.+.+
T Consensus       133 vD~~~~kvv~ei~vp~~~~vy~t~-e~~~~~~~~Dg~~--------~~v~~d~~g~~~~~~~~vf~~~~~~v~~rP~~~~  203 (352)
T TIGR02658       133 VDLEGKAFVRMMDVPDCYHIFPTA-NDTFFMHCRDGSL--------AKVGYGTKGNPKIKPTEVFHPEDEYLINHPAYSN  203 (352)
T ss_pred             EECCCCcEEEEEeCCCCcEEEEec-CCccEEEeecCce--------EEEEecCCCceEEeeeeeecCCccccccCCceEc
Confidence            999999887766543322211111 1111122222111        111110000000 0000111100000 0002344


Q ss_pred             -CCCEEEEeeCCCeEEEEECCCC-----ceeeeccccc---C-ceeceEEEEECCCCCEEEEeeC----------CCcEE
Q 021399          157 -LNRTIISAGEDAIVRIWDTETG-----KLLKESDKET---G-HKKTITSLAKAADGSHFLTGSL----------DKSAK  216 (313)
Q Consensus       157 -~~~~i~t~~~d~~i~lwd~~~~-----~~~~~~~~~~---~-h~~~v~~~~~s~~~~~l~s~s~----------dg~i~  216 (313)
                       ++.++....+ |.|.+.|+...     ..+..+....   + ......-++++++++++.....          .+.|.
T Consensus       204 ~dg~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~  282 (352)
T TIGR02658       204 KSGRLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLF  282 (352)
T ss_pred             CCCcEEEEecC-CeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEE
Confidence             6666665555 99999995332     2222221110   0 1223334899999998887532          25799


Q ss_pred             EEECCCCcEEEEEecCCceeEEEeccCCC-EEEEccc
Q 021399          217 LWDARTLELIKTYVTERPVNAVTMSPLLD-HVVLGGG  252 (313)
Q Consensus       217 iwd~~~~~~~~~~~~~~~~~~~~~~p~~~-~~~~~~~  252 (313)
                      ++|.++++.+..+.....+..++++|++. .++++.+
T Consensus       283 ViD~~t~kvi~~i~vG~~~~~iavS~Dgkp~lyvtn~  319 (352)
T TIGR02658       283 VVDAKTGKRLRKIELGHEIDSINVSQDAKPLLYALST  319 (352)
T ss_pred             EEECCCCeEEEEEeCCCceeeEEECCCCCeEEEEeCC
Confidence            99999999999998888899999999999 7776543

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]

Probab=99.32  E-value=1.7e-11  Score=117.64  Aligned_cols=221  Identities=14%  Similarity=0.207  Sum_probs=150.4

Q ss_pred             cccccccceeEEEEccCCCEEEEeeCCCCeEEEeCCCCcEEEEecC-CCCceEEEEECCCCCeEEEeeCCCcEEEEECCC
Q 021399            5 LMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRG-HNGAVWCCDVSRDSMTLITGSADQTAKLWNVET   83 (313)
Q Consensus         5 ~l~~h~~~v~~~~fs~~g~~l~s~s~d~~i~iw~~~~~~~~~~~~~-H~~~V~~~~~~~~~~~l~s~s~D~~v~vWd~~~   83 (313)
                      .++.|-..|.++.=+|...+.+||+.||.|++|....+..+..++. -...|+.+.|+.+|+.+..+..||.+-+|.+. 
T Consensus      2203 ~~k~~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~- 2281 (2439)
T KOG1064|consen 2203 MIKHPVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNHQGNKFGIVDGDGDLSLWQAS- 2281 (2439)
T ss_pred             EeecccCceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeeccCcchhhhhhhcccCCceeeeccCCceeecccC-
Confidence            4555667788888889999999999999999999988888777753 34789999999999999999999999999977 


Q ss_pred             CeEEEEec-CCCCeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEccCCCEEE
Q 021399           84 GAQLFTFN-FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTII  162 (313)
Q Consensus        84 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~  162 (313)
                      .+...... ++.....+.|..  ...+  +.+....+.....|+..     ..+..-++...|.+.++.+++-|....++
T Consensus      2282 pk~~~s~qchnk~~~Df~Fi~--s~~~--tag~s~d~~n~~lwDtl-----~~~~~s~v~~~H~~gaT~l~~~P~~qlli 2352 (2439)
T KOG1064|consen 2282 PKPYTSWQCHNKALSDFRFIG--SLLA--TAGRSSDNRNVCLWDTL-----LPPMNSLVHTCHDGGATVLAYAPKHQLLI 2352 (2439)
T ss_pred             CcceeccccCCccccceeeee--hhhh--ccccCCCCCcccchhcc-----cCcccceeeeecCCCceEEEEcCcceEEE
Confidence            23322222 222333333322  1100  00001111122222211     11223334478999999999999999999


Q ss_pred             EeeCCCeEEEEECCCCceeeecccccCceeceEEEEECCCCCEEEEeeCCCcEEEEECCCCcEEEEEecCCceeEEEecc
Q 021399          163 SAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTERPVNAVTMSP  242 (313)
Q Consensus       163 t~~~d~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~p  242 (313)
                      +||.+|.|+|||++..++..++.        .    +. ...++++|+..|.++||++.....+.++..+..-... |--
T Consensus      2353 sggr~G~v~l~D~rqrql~h~~~--------~----~~-~~~~f~~~ss~g~ikIw~~s~~~ll~~~p~e~ak~gf-Fr~ 2418 (2439)
T KOG1064|consen 2353 SGGRKGEVCLFDIRQRQLRHTFQ--------A----LD-TREYFVTGSSEGNIKIWRLSEFGLLHTFPSEHAKQGF-FRN 2418 (2439)
T ss_pred             ecCCcCcEEEeehHHHHHHHHhh--------h----hh-hhheeeccCcccceEEEEccccchhhcCchhhcccch-hhh
Confidence            99999999999998876544332        1    33 4578999999999999999988887777654422222 444


Q ss_pred             CCCEEEE
Q 021399          243 LLDHVVL  249 (313)
Q Consensus       243 ~~~~~~~  249 (313)
                      .|.++.+
T Consensus      2419 ~g~Q~~v 2425 (2439)
T KOG1064|consen 2419 IGMQINV 2425 (2439)
T ss_pred             cCceeee
Confidence            4444444

>PRK04792 tolB translocation protein TolB; Provisional

Probab=99.32  E-value=7.5e-10  Score=98.75  Aligned_cols=204  Identities=11%  Similarity=0.042  Sum_probs=118.9

Q ss_pred             CeEEEeCCCCcEEEEecCCCCceEEEEECCCCCeEEEeeC-CC--cEEEEECCCCeEEEEecCCCCeeEEEeecCCeEEE
Q 021399           33 TPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSA-DQ--TAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAV  109 (313)
Q Consensus        33 ~i~iw~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~-D~--~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  109 (313)
                      .+.++|.+... ...+..+...+.+..|+|||+.++-.+. ++  .|.+||+.+++.......                 
T Consensus       199 ~l~i~d~dG~~-~~~l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~lt~~-----------------  260 (448)
T PRK04792        199 QLMIADYDGYN-EQMLLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREKVTSF-----------------  260 (448)
T ss_pred             EEEEEeCCCCC-ceEeecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEEecCC-----------------
Confidence            45556754433 3455566778889999999997766543 33  477778776543211000                 


Q ss_pred             EECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEccCCCEEEE-eeCCC--eEEEEECCCCceeeeccc
Q 021399          110 ITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIIS-AGEDA--IVRIWDTETGKLLKESDK  186 (313)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~t-~~~d~--~i~lwd~~~~~~~~~~~~  186 (313)
                                                       .   +......|+|+++.|+. .+.++  .|+++|+.+++.. .+. 
T Consensus       261 ---------------------------------~---g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~dl~tg~~~-~lt-  302 (448)
T PRK04792        261 ---------------------------------P---GINGAPRFSPDGKKLALVLSKDGQPEIYVVDIATKALT-RIT-  302 (448)
T ss_pred             ---------------------------------C---CCcCCeeECCCCCEEEEEEeCCCCeEEEEEECCCCCeE-ECc-
Confidence                                             0   11123568999987765 45555  4888898876542 332 


Q ss_pred             ccCceeceEEEEECCCCCEEEEeeC-CC--cEEEEECCCCcEEEEEecCCceeEEEeccCCCEEEEcccccC-ceeEeec
Q 021399          187 ETGHKKTITSLAKAADGSHFLTGSL-DK--SAKLWDARTLELIKTYVTERPVNAVTMSPLLDHVVLGGGQDA-SAVTTTD  262 (313)
Q Consensus       187 ~~~h~~~v~~~~~s~~~~~l~s~s~-dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~-~~~~~~~  262 (313)
                        .+.......+|+|||+.|+..+. ++  .|.++|+++++..+...........+|+|+++.++.+....+ ..++..|
T Consensus       303 --~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~Lt~~g~~~~~~~~SpDG~~l~~~~~~~g~~~I~~~d  380 (448)
T PRK04792        303 --RHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSRLTFEGEQNLGGSITPDGRSMIMVNRTNGKFNIARQD  380 (448)
T ss_pred             --cCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEEecCCCCCcCeeECCCCCEEEEEEecCCceEEEEEE
Confidence              23445667889999998876654 33  466778887765432222222345689999998877643222 1233334


Q ss_pred             cCCCceeeeeeehhhhhhhccccccccceeEEEECCCCCeeEEEEE
Q 021399          263 HRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKRYGFLLL  308 (313)
Q Consensus       263 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~fspdgk~~~~~~~  308 (313)
                      ...+...             .+... ......+|+|||+.++|...
T Consensus       381 l~~g~~~-------------~lt~~-~~d~~ps~spdG~~I~~~~~  412 (448)
T PRK04792        381 LETGAMQ-------------VLTST-RLDESPSVAPNGTMVIYSTT  412 (448)
T ss_pred             CCCCCeE-------------EccCC-CCCCCceECCCCCEEEEEEe
Confidence            3332211             11111 11223479999999988653

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=99.30  E-value=6.7e-09  Score=89.88  Aligned_cols=258  Identities=16%  Similarity=0.131  Sum_probs=147.4

Q ss_pred             EEEeeCCCCeEEEeCCCCcEEEEecCCCCceEEEEECCCCCeEEEeeCCCcEEEEECCCCeEEEEecCCCCeeEEEeecC
Q 021399           25 LFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVG  104 (313)
Q Consensus        25 l~s~s~d~~i~iw~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~  104 (313)
                      +++-..++.|.|.|.++.+.+.++......-..+.++|||++++.+++||.|.++|+.+.+.+..+........+.++++
T Consensus         9 ~V~~~~~~~v~viD~~t~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G~~~~~i~~s~D   88 (369)
T PF02239_consen    9 YVVERGSGSVAVIDGATNKVVARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKVGGNPRGIAVSPD   88 (369)
T ss_dssp             EEEEGGGTEEEEEETTT-SEEEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-SSEEEEEEE--T
T ss_pred             EEEecCCCEEEEEECCCCeEEEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEecCCCcceEEEcCC
Confidence            34556789999999999999999987544434577999999999999999999999999998888888778888999988


Q ss_pred             CeEEEEECC--Ccee-ccccceeeeeeeCCCCCCCceEEEec-------CCCCceEEEEEccCCCEEEEe-eCCCeEEEE
Q 021399          105 DKLAVITTD--PFME-LNSAIHVKRIARDPADQGGESVLILK-------GPQGRINRAVWGPLNRTIISA-GEDAIVRIW  173 (313)
Q Consensus       105 ~~~~~~~~~--~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~i~~~~~~~~~~~i~t~-~~d~~i~lw  173 (313)
                      ++.+++.+.  +... ++.             ...+.+..+.       ...+++..+.-+|....++.. -+.+.|-+-
T Consensus        89 G~~~~v~n~~~~~v~v~D~-------------~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vV  155 (369)
T PF02239_consen   89 GKYVYVANYEPGTVSVIDA-------------ETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVV  155 (369)
T ss_dssp             TTEEEEEEEETTEEEEEET-------------TT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEE
T ss_pred             CCEEEEEecCCCceeEecc-------------ccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEE
Confidence            877665431  1111 111             0111222211       133466677777777755544 455888787


Q ss_pred             ECCCCceeeecccccCceeceEEEEECCCCCEEEEe-eCCCcEEEEECCCCcEEEEEecC-----CceeEEEeccCCCEE
Q 021399          174 DTETGKLLKESDKETGHKKTITSLAKAADGSHFLTG-SLDKSAKLWDARTLELIKTYVTE-----RPVNAVTMSPLLDHV  247 (313)
Q Consensus       174 d~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~-s~dg~i~iwd~~~~~~~~~~~~~-----~~~~~~~~~p~~~~~  247 (313)
                      |....+.+.....  .-........|+|++.+++.+ ..++.|-++|.++++.+..+...     .+...+ -+|...-+
T Consensus       156 dy~d~~~~~~~~i--~~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~-php~~g~v  232 (369)
T PF02239_consen  156 DYSDPKNLKVTTI--KVGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKLVALIDTGKKPHPGPGANF-PHPGFGPV  232 (369)
T ss_dssp             ETTTSSCEEEEEE--E--TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEEEEEEE-SSSBEETTEEEE-EETTTEEE
T ss_pred             Eeccccccceeee--cccccccccccCcccceeeecccccceeEEEeeccceEEEEeeccccccccccccc-cCCCcceE
Confidence            8766543322111  122346678999999987664 45778999999998887765421     122222 25554434


Q ss_pred             EEcccccCce--eEeeccCCCceeeeeeehhhhhhhccccccccceeEEEECCCCCeeEE
Q 021399          248 VLGGGQDASA--VTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKRYGF  305 (313)
Q Consensus       248 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~fspdgk~~~~  305 (313)
                      ....+.....  ....+      ....+|....+.++.+....++ .-++-|||++++..
T Consensus       233 w~~~~~~~~~~~~ig~~------~v~v~d~~~wkvv~~I~~~G~g-lFi~thP~s~~vwv  285 (369)
T PF02239_consen  233 WATSGLGYFAIPLIGTD------PVSVHDDYAWKVVKTIPTQGGG-LFIKTHPDSRYVWV  285 (369)
T ss_dssp             EEEEBSSSSEEEEEE--------TTT-STTTBTSEEEEEE-SSSS---EE--TT-SEEEE
T ss_pred             EeeccccceecccccCC------ccccchhhcCeEEEEEECCCCc-ceeecCCCCccEEe
Confidence            3333222221  11111      1223555555556666655566 67777999997643

...

>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]

Probab=99.28  E-value=1.5e-09  Score=94.00  Aligned_cols=104  Identities=23%  Similarity=0.279  Sum_probs=87.4

Q ss_pred             cCCCCceEEEEEccCCCEEEEeeCCCeEEEEECCCCceeeecccccCceeceEEEEECCCCCEEEEeeCCCcEEEEECCC
Q 021399          143 KGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDART  222 (313)
Q Consensus       143 ~~~~~~i~~~~~~~~~~~i~t~~~d~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~dg~i~iwd~~~  222 (313)
                      ..|.+.++.+.++..-..|-+++.|+.+..|+.+..+.++...   .....+.+++.+|||..+++++  ++|++||+++
T Consensus        99 ~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~---~~~~~~~sl~is~D~~~l~~as--~~ik~~~~~~  173 (541)
T KOG4547|consen   99 DKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWK---EQKPLVSSLCISPDGKILLTAS--RQIKVLDIET  173 (541)
T ss_pred             CCCCCcceeeecccccCceEecCCceeEEEEecccceeeeeec---cCCCccceEEEcCCCCEEEecc--ceEEEEEccC
Confidence            4578889999988887889999999999999999888776543   3467889999999999999988  6899999999


Q ss_pred             CcEEEEEe-cCCceeEEEeccC-----CCEEEEcc
Q 021399          223 LELIKTYV-TERPVNAVTMSPL-----LDHVVLGG  251 (313)
Q Consensus       223 ~~~~~~~~-~~~~~~~~~~~p~-----~~~~~~~~  251 (313)
                      ++.+..+. +..++++++|.-.     |.+++.+.
T Consensus       174 kevv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa  208 (541)
T KOG4547|consen  174 KEVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSA  208 (541)
T ss_pred             ceEEEEecCCCcceEEEEEEEeccccccceeeecc
Confidence            99999997 4678999999776     56666543

>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]

Probab=99.27  E-value=2.6e-11  Score=110.94  Aligned_cols=78  Identities=35%  Similarity=0.618  Sum_probs=72.4

Q ss_pred             cccccccccceeEEEEccCCCEEEEeeCCCCeEEEeCCCCcEEE-EecCCCCceEEEEECCCCCeEEEeeCCCcEEEEEC
Q 021399            3 PILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLG-TYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNV   81 (313)
Q Consensus         3 ~~~l~~h~~~v~~~~fs~~g~~l~s~s~d~~i~iw~~~~~~~~~-~~~~H~~~V~~~~~~~~~~~l~s~s~D~~v~vWd~   81 (313)
                      |..+.||++.+..+.|+.||.+++|.|.|.++|+|++++.+... +.-+|...||.+.|.|+  .++|++.|-+.++|+.
T Consensus       168 p~~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~~~~~~n--~i~t~gedctcrvW~~  245 (967)
T KOG0974|consen  168 PIRLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGCTGFGHSARVWACCFLPN--RIITVGEDCTCRVWGV  245 (967)
T ss_pred             cceecccCCceEEEEEccCCcEEEEEecCcceeeeecccccccCcccccccceeEEEEeccc--eeEEeccceEEEEEec
Confidence            56799999999999999999999999999999999999998876 67789999999999987  8999999999999964


Q ss_pred             C
Q 021399           82 E   82 (313)
Q Consensus        82 ~   82 (313)
                      .
T Consensus       246 ~  246 (967)
T KOG0974|consen  246 N  246 (967)
T ss_pred             c
Confidence            4

>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=99.25  E-value=1.9e-09  Score=87.81  Aligned_cols=247  Identities=15%  Similarity=0.186  Sum_probs=137.8

Q ss_pred             ccceeEEEEccCCCEEEEeeCCCCeEEEeCCCC-c----EEEEecCCCC------------ceEEEEECCCCC--eEEEe
Q 021399           10 ERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNG-E----RLGTYRGHNG------------AVWCCDVSRDSM--TLITG   70 (313)
Q Consensus        10 ~~~v~~~~fs~~g~~l~s~s~d~~i~iw~~~~~-~----~~~~~~~H~~------------~V~~~~~~~~~~--~l~s~   70 (313)
                      .+-+.++.|+.+|++|++|..+|.|-++.-+.. .    ...+++.|+.            .|..+.|.++++  .|+..
T Consensus        25 adiis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLls  104 (433)
T KOG1354|consen   25 ADIISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLLS  104 (433)
T ss_pred             hcceeeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEEe
Confidence            345789999999999999999999999943322 2    3456666764            478889987764  67777


Q ss_pred             eCCCcEEEEECCCCeEEE---EecCC---CCeeEEE---eecCCeEEEEE-------------------CCCceec---c
Q 021399           71 SADQTAKLWNVETGAQLF---TFNFD---SPARSVD---FAVGDKLAVIT-------------------TDPFMEL---N  119 (313)
Q Consensus        71 s~D~~v~vWd~~~~~~~~---~~~~~---~~~~~~~---~~~~~~~~~~~-------------------~~~~~~~---~  119 (313)
                      ..|.+||+|.+.......   .+...   ..+.++.   ..+-+..+.+.                   ++....+   +
T Consensus       105 tNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~Et~lSADd  184 (433)
T KOG1354|consen  105 TNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKETFLSADD  184 (433)
T ss_pred             cCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccceEeeccc
Confidence            899999999886432211   00000   0011111   00111111111                   1111000   1


Q ss_pred             ccceeeeeeeCCCCCCCceEEEecCCC-----CceEEEEEccCC-CEEEEeeCCCeEEEEECCCCceeee----ccc---
Q 021399          120 SAIHVKRIARDPADQGGESVLILKGPQ-----GRINRAVWGPLN-RTIISAGEDAIVRIWDTETGKLLKE----SDK---  186 (313)
Q Consensus       120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~i~~~~~~~~~-~~i~t~~~d~~i~lwd~~~~~~~~~----~~~---  186 (313)
                      ..+++|.+.-  .+. .-.+..++-+.     ..|++..|+|.. +.|+-.+..|.|+|.|++...+...    +..   
T Consensus       185 LRINLWnlei--~d~-sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEeped  261 (433)
T KOG1354|consen  185 LRINLWNLEI--IDQ-SFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFEEPED  261 (433)
T ss_pred             eeeeeccccc--cCC-ceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhhhccccC
Confidence            1122222211  010 11122222222     346777888875 5677788899999999985433211    000   


Q ss_pred             cc------CceeceEEEEECCCCCEEEEeeCCCcEEEEECCC-CcEEEEEecCC----------------ceeEEEeccC
Q 021399          187 ET------GHKKTITSLAKAADGSHFLTGSLDKSAKLWDART-LELIKTYVTER----------------PVNAVTMSPL  243 (313)
Q Consensus       187 ~~------~h~~~v~~~~~s~~~~~l~s~s~dg~i~iwd~~~-~~~~~~~~~~~----------------~~~~~~~~p~  243 (313)
                      ..      .--..|..+.|+..|.++++-.. .+|++||+.. .+++.+++...                .-..++|+-+
T Consensus       262 p~~rsffseiIsSISDvKFs~sGryilsRDy-ltvk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~IfdKFec~~sg~  340 (433)
T KOG1354|consen  262 PSSRSFFSEIISSISDVKFSHSGRYILSRDY-LTVKLWDLNMEAKPVETYPVHEYLRSKLCSLYENDAIFDKFECSWSGN  340 (433)
T ss_pred             CcchhhHHHHhhhhhceEEccCCcEEEEecc-ceeEEEeccccCCcceEEeehHhHHHHHHHHhhccchhheeEEEEcCC
Confidence            00      01235778899999999987654 6899999954 56666664321                1245777766


Q ss_pred             CCEEEEcccccCceeEeec
Q 021399          244 LDHVVLGGGQDASAVTTTD  262 (313)
Q Consensus       244 ~~~~~~~~~~~~~~~~~~~  262 (313)
                      +.++++| + ..+.+.+++
T Consensus       341 ~~~v~TG-s-y~n~frvf~  357 (433)
T KOG1354|consen  341 DSYVMTG-S-YNNVFRVFN  357 (433)
T ss_pred             cceEecc-c-ccceEEEec
Confidence            6555443 3 344555555

>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]

Probab=99.23  E-value=7.2e-10  Score=95.98  Aligned_cols=124  Identities=14%  Similarity=0.186  Sum_probs=106.3

Q ss_pred             CEEEEeeCCCeEEEEECCCCceeeecccccCceeceEEEEECCCCCEEEEeeCCCcEEEEECCCCcEEEEEec-CCceeE
Q 021399          159 RTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVT-ERPVNA  237 (313)
Q Consensus       159 ~~i~t~~~d~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~-~~~~~~  237 (313)
                      ..++-|...|.|-++++..++.-.++. ...|.+.|.++.++.+-.+|.|++.|+.+-.|+..++..++.+.. ...+.+
T Consensus        71 ~~lvlgt~~g~v~~ys~~~g~it~~~s-t~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~~~s  149 (541)
T KOG4547|consen   71 SMLVLGTPQGSVLLYSVAGGEITAKLS-TDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWKEQKPLVSS  149 (541)
T ss_pred             eEEEeecCCccEEEEEecCCeEEEEEe-cCCCCCcceeeecccccCceEecCCceeEEEEecccceeeeeeccCCCccce
Confidence            357778888999999998887655443 357999999999999999999999999999999999999888864 445788


Q ss_pred             EEeccCCCEEEEcccccCceeEeeccCCCceeeeeeehhhhhhhccccccccceeEEEECCC
Q 021399          238 VTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPD  299 (313)
Q Consensus       238 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~fspd  299 (313)
                      ++.+|++..+++++.                .++.||.++.+.+..|.||.++|.+++|-.+
T Consensus       150 l~is~D~~~l~~as~----------------~ik~~~~~~kevv~~ftgh~s~v~t~~f~~~  195 (541)
T KOG4547|consen  150 LCISPDGKILLTASR----------------QIKVLDIETKEVVITFTGHGSPVRTLSFTTL  195 (541)
T ss_pred             EEEcCCCCEEEeccc----------------eEEEEEccCceEEEEecCCCcceEEEEEEEe
Confidence            999999988887754                5788999999999999999999999999888

>PRK01029 tolB translocation protein TolB; Provisional

Probab=99.21  E-value=5.1e-09  Score=92.80  Aligned_cols=182  Identities=13%  Similarity=0.087  Sum_probs=107.4

Q ss_pred             ccceeEEEEccCCCEEEEeeC-CC----CeEEEeCCCC---cEEEEecCCCCceEEEEECCCCCeEEEee-CCCcEEEEE
Q 021399           10 ERPLTYLKYNKDGDLLFSCAK-DH----TPTVWFADNG---ERLGTYRGHNGAVWCCDVSRDSMTLITGS-ADQTAKLWN   80 (313)
Q Consensus        10 ~~~v~~~~fs~~g~~l~s~s~-d~----~i~iw~~~~~---~~~~~~~~H~~~V~~~~~~~~~~~l~s~s-~D~~v~vWd   80 (313)
                      .+.....+|||||+.|+..+. +|    .+.+|++..+   +......++.+.....+|+|||+.++..+ .+|..++|.
T Consensus       230 ~g~~~~p~wSPDG~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~  309 (428)
T PRK01029        230 QGNQLMPTFSPRKKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYI  309 (428)
T ss_pred             CCCccceEECCCCCEEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEE
Confidence            334456799999998887653 22    3344666643   32223333334446789999998666544 566666664


Q ss_pred             CCCCeEEEEecCCCCeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEccCCCE
Q 021399           81 VETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRT  160 (313)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~  160 (313)
                      +.-...       .                                         + ....+......+....|+|+|+.
T Consensus       310 ~~~~~~-------g-----------------------------------------~-~~~~lt~~~~~~~~p~wSPDG~~  340 (428)
T PRK01029        310 MQIDPE-------G-----------------------------------------Q-SPRLLTKKYRNSSCPAWSPDGKK  340 (428)
T ss_pred             EECccc-------c-----------------------------------------c-ceEEeccCCCCccceeECCCCCE
Confidence            321000       0                                         0 00001111223456779999998


Q ss_pred             EEEeeCC---CeEEEEECCCCceeeecccccCceeceEEEEECCCCCEEEEeeC---CCcEEEEECCCCcEEEEEecCCc
Q 021399          161 IISAGED---AIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSL---DKSAKLWDARTLELIKTYVTERP  234 (313)
Q Consensus       161 i~t~~~d---~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~---dg~i~iwd~~~~~~~~~~~~~~~  234 (313)
                      |+..+.+   ..|.+||+.+++... +..   ....+....|+|||+.|+....   ...|.++|+.+++..........
T Consensus       341 Laf~~~~~g~~~I~v~dl~~g~~~~-Lt~---~~~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~g~~~~Lt~~~g~  416 (428)
T PRK01029        341 IAFCSVIKGVRQICVYDLATGRDYQ-LTT---SPENKESPSWAIDSLHLVYSAGNSNESELYLISLITKKTRKIVIGSGE  416 (428)
T ss_pred             EEEEEcCCCCcEEEEEECCCCCeEE-ccC---CCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeecCCCc
Confidence            8876543   469999998876532 221   1234567889999998875433   35688889988776544434445


Q ss_pred             eeEEEeccCC
Q 021399          235 VNAVTMSPLL  244 (313)
Q Consensus       235 ~~~~~~~p~~  244 (313)
                      ....+|+|..
T Consensus       417 ~~~p~Ws~~~  426 (428)
T PRK01029        417 KRFPSWGAFP  426 (428)
T ss_pred             ccCceecCCC
Confidence            6677787754

>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]

Probab=99.21  E-value=1.4e-08  Score=87.78  Aligned_cols=277  Identities=17%  Similarity=0.145  Sum_probs=154.5

Q ss_pred             cceeEEEEccCCCEEEEeeCCCCeEEEeCCCCcEEEEecCCCCceEEEEECCCCCeEEEe-----eCC-----CcEEEEE
Q 021399           11 RPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITG-----SAD-----QTAKLWN   80 (313)
Q Consensus        11 ~~v~~~~fs~~g~~l~s~s~d~~i~iw~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~-----s~D-----~~v~vWd   80 (313)
                      .++...++|++|++++- +.+..++|++...+..+.+...-  .+..+.|+|.+++|.|-     -.|     .-+++|+
T Consensus        35 ~~~~v~~~S~~G~lfA~-~~~~~v~i~~~~~~~~~lt~~~~--~~~~L~fSP~g~yL~T~e~~~i~~~~~~~~pn~~v~~  111 (566)
T KOG2315|consen   35 RPCNVFAYSNNGRLFAY-SDNQVVKVFEIATLKVVLCVELK--KTYDLLFSPKGNYLLTWEPWAIYGPKNASNPNVLVYN  111 (566)
T ss_pred             CcceeEEEcCCCcEEEE-EcCCeEEEEEccCCcEEEEeccc--eeeeeeecccccccccccccccccCCCCCCCceeeee
Confidence            34567889999987774 55678999998888654444432  78899999999887661     122     3466999


Q ss_pred             CCCCeEEEEecCCC-CeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEccCC-
Q 021399           81 VETGAQLFTFNFDS-PARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLN-  158 (313)
Q Consensus        81 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-  158 (313)
                      ++++.....+.... ..-...|+.++.+++-.......      ..++..       ......+-|...|....++|.. 
T Consensus       112 vet~~~~s~~q~k~Q~~W~~qfs~dEsl~arlv~nev~------f~~~~~-------f~~~~~kl~~~~i~~f~lSpgp~  178 (566)
T KOG2315|consen  112 VETGVQRSQIQKKMQNGWVPQFSIDESLAARLVSNEVQ------FYDLGS-------FKTIQHKLSVSGITMLSLSPGPE  178 (566)
T ss_pred             eccceehhheehhhhcCcccccccchhhhhhhhcceEE------EEecCC-------ccceeeeeeccceeeEEecCCCC
Confidence            88854333222111 11344566665554332222211      111110       0111122345677788888763 


Q ss_pred             -CEEEE-----eeCCCeEEEEECCCCceeeecccccCceeceEEEEECCCCCE---EEEeeCC---------CcEEEEEC
Q 021399          159 -RTIIS-----AGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSH---FLTGSLD---------KSAKLWDA  220 (313)
Q Consensus       159 -~~i~t-----~~~d~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~---l~s~s~d---------g~i~iwd~  220 (313)
                       ..+++     .|.-..++||-..-...-+.+...+-...+--.+.|.+-|.-   |++...|         .++++.++
T Consensus       179 ~~~vAvyvPe~kGaPa~vri~~~~~~~~~~~~a~ksFFkadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t  258 (566)
T KOG2315|consen  179 PPFVAVYVPEKKGAPASVRIYKYPEEGQHQPVANKSFFKADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLAT  258 (566)
T ss_pred             CceEEEEccCCCCCCcEEEEeccccccccchhhhccccccceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEe
Confidence             23332     355567999976421111111000001122233445555542   2222233         35777777


Q ss_pred             CCCcEEEEEecCCceeEEEeccCCCEEEEcccccCceeEeeccCC------------------------------Cceee
Q 021399          221 RTLELIKTYVTERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRA------------------------------GKFEA  270 (313)
Q Consensus       221 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~------------------------------~~~~~  270 (313)
                      +...+...+....+|.++.|+|.+...++.-|.--..+.++|.+.                              -...+
T Consensus       259 ~g~s~~V~L~k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr~~~v~df~egpRN~~~fnp~g~ii~lAGFGNL~G~m  338 (566)
T KOG2315|consen  259 QGESVSVPLLKEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLRGKPVFDFPEGPRNTAFFNPHGNIILLAGFGNLPGDM  338 (566)
T ss_pred             cCceEEEecCCCCCceEEEECCCCCEEEEEEecccceEEEEcCCCCEeEeCCCCCccceEECCCCCEEEEeecCCCCCce
Confidence            755565666667788888888888766655433223333444332                              01245


Q ss_pred             eeeehhhhhhhccccccccceeEEEECCCCCeeEE
Q 021399          271 KFFDKILQEEIGGVKGHFGPINALAFNPDGKRYGF  305 (313)
Q Consensus       271 ~~~~~~~~~~~~~~~~h~~~V~~~~fspdgk~~~~  305 (313)
                      .+||....+.+..+.+-...  -.+|+|||+.|--
T Consensus       339 EvwDv~n~K~i~~~~a~~tt--~~eW~PdGe~flT  371 (566)
T KOG2315|consen  339 EVWDVPNRKLIAKFKAANTT--VFEWSPDGEYFLT  371 (566)
T ss_pred             EEEeccchhhccccccCCce--EEEEcCCCcEEEE
Confidence            68998888888888765444  4789999999743

>KOG4190 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.19  E-value=8.1e-11  Score=101.31  Aligned_cols=177  Identities=18%  Similarity=0.283  Sum_probs=125.4

Q ss_pred             cccccccceeEEEEccCCCEEEEeeCCCCeEEEeCCC-------CcEEEEecCCCCceEEEEECCCCCeEEEeeCCCcEE
Q 021399            5 LMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADN-------GERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAK   77 (313)
Q Consensus         5 ~l~~h~~~v~~~~fs~~g~~l~s~s~d~~i~iw~~~~-------~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~v~   77 (313)
                      -+.||...|..+.--.+.+-++++|.|++|++|.++.       ..+..++.+|+.+|..+.|-.+.+.+++  .||-+.
T Consensus       730 nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~S--cD~giH  807 (1034)
T KOG4190|consen  730 NFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIAS--CDGGIH  807 (1034)
T ss_pred             cccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeee--ccCcce
Confidence            4678999988876666778899999999999998763       3366788999999999999988877764  588999


Q ss_pred             EEECCCCeEEEEecCCCCeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEccC
Q 021399           78 LWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPL  157 (313)
Q Consensus        78 vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~  157 (313)
                      +||+--+.......         +                            .+....+..++.++.....         
T Consensus       808 lWDPFigr~Laq~~---------d----------------------------apk~~a~~~ikcl~nv~~~---------  841 (1034)
T KOG4190|consen  808 LWDPFIGRLLAQME---------D----------------------------APKEGAGGNIKCLENVDRH---------  841 (1034)
T ss_pred             eecccccchhHhhh---------c----------------------------CcccCCCceeEecccCcch---------
Confidence            99976543321000         0                            0000111122222211111         


Q ss_pred             CCEEEEeeCCCeEEEEECCCCceeeeccc--ccCceeceEEEEECCCCCEEEEeeCCCcEEEEECCCCcEEEEEe
Q 021399          158 NRTIISAGEDAIVRIWDTETGKLLKESDK--ETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYV  230 (313)
Q Consensus       158 ~~~i~t~~~d~~i~lwd~~~~~~~~~~~~--~~~h~~~v~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~  230 (313)
                       -.++.|+...+++++|.++..-..+...  ..+-+..+++++..+.|+.++.+-..|.|-+.|.++|+.+..+.
T Consensus       842 -iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~iaVa~~GN~lAa~LSnGci~~LDaR~G~vINswr  915 (1034)
T KOG4190|consen  842 -ILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAIAVADKGNKLAAALSNGCIAILDARNGKVINSWR  915 (1034)
T ss_pred             -heeeeccchhhheeeecccccceeeEEeccCCCCchheeEEEeccCcchhhHHhcCCcEEEEecCCCceeccCC
Confidence             1345567889999999887654444332  24556789999999999999999999999999999999887653

>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.18  E-value=2.2e-09  Score=86.52  Aligned_cols=83  Identities=18%  Similarity=0.369  Sum_probs=75.3

Q ss_pred             CcccccccccceeEEEEccCCCEEEEeeCCCC-eEEEeCCCCcEEEEecC--CCCceEEEEECCCCCeEEEeeCCCcEEE
Q 021399            2 RPILMKGHERPLTYLKYNKDGDLLFSCAKDHT-PTVWFADNGERLGTYRG--HNGAVWCCDVSRDSMTLITGSADQTAKL   78 (313)
Q Consensus         2 ~~~~l~~h~~~v~~~~fs~~g~~l~s~s~d~~-i~iw~~~~~~~~~~~~~--H~~~V~~~~~~~~~~~l~s~s~D~~v~v   78 (313)
                      .|.+..+|...|.|++.+.+|.++||+|..|+ |||||..+|+.+.+++.  -...|.+++|||+..+|+.+|..||+.|
T Consensus       173 ~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~iy~iaFSp~~s~LavsSdKgTlHi  252 (346)
T KOG2111|consen  173 APSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGVDRADIYCIAFSPNSSWLAVSSDKGTLHI  252 (346)
T ss_pred             CceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCCchheEEEEEeCCCccEEEEEcCCCeEEE
Confidence            47899999999999999999999999998876 78999999999999974  2357999999999999999999999999


Q ss_pred             EECCCC
Q 021399           79 WNVETG   84 (313)
Q Consensus        79 Wd~~~~   84 (313)
                      +.++..
T Consensus       253 F~l~~~  258 (346)
T KOG2111|consen  253 FSLRDT  258 (346)
T ss_pred             EEeecC
Confidence            998764

>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.15  E-value=9.4e-11  Score=98.65  Aligned_cols=214  Identities=17%  Similarity=0.256  Sum_probs=153.2

Q ss_pred             EEEEECCCCCeEEEeeCCCcEEEEECCCCeEEEEecCCCCeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCC
Q 021399           56 WCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQG  135 (313)
Q Consensus        56 ~~~~~~~~~~~l~s~s~D~~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  135 (313)
                      ..+.++.+|+.++-|++-|.+-.+|-.+++..+.+.....+..+.|...+++.++.......+          ++   ..
T Consensus       133 Y~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~v~Etv~Dv~~LHneq~~AVAQK~y~yv----------YD---~~  199 (545)
T KOG1272|consen  133 YHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEINVMETVRDVTFLHNEQFFAVAQKKYVYV----------YD---NN  199 (545)
T ss_pred             eeeeecCCccEEEecCCccceeeeecccceeeeeeehhhhhhhhhhhcchHHHHhhhhceEEE----------ec---CC
Confidence            457888899999999999999999999999988887777777777765555444433221111          11   11


Q ss_pred             CceEEEecCCCCceEEEEEccCCCEEEEeeCCCeEEEEECCCCceeeecccccCceeceEEEEECCCCCEEEEeeCCCcE
Q 021399          136 GESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSA  215 (313)
Q Consensus       136 ~~~~~~~~~~~~~i~~~~~~~~~~~i~t~~~d~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~dg~i  215 (313)
                      +..+.+++- ..++..+.|-|..-.+++++..|.++--|+..|+++..+..   ..+.+..++-.|-+..+-+|...|+|
T Consensus       200 GtElHClk~-~~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t---~~G~~~vm~qNP~NaVih~GhsnGtV  275 (545)
T KOG1272|consen  200 GTELHCLKR-HIRVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIRT---GAGRTDVMKQNPYNAVIHLGHSNGTV  275 (545)
T ss_pred             CcEEeehhh-cCchhhhcccchhheeeecccCCceEEEeechhhhhHHHHc---cCCccchhhcCCccceEEEcCCCceE
Confidence            222223332 23567777888878899999999999999999998766542   34567777788888889999999999


Q ss_pred             EEEECCCCcEEEEEe-cCCceeEEEeccCCCEEEEcccccCceeEeeccCCCceeeeeeehhhhhhhccccccccceeEE
Q 021399          216 KLWDARTLELIKTYV-TERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINAL  294 (313)
Q Consensus       216 ~iwd~~~~~~~~~~~-~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~  294 (313)
                      .+|...+.+++..+. +..++.++++.|.|.+++++|-+.  .            +++||+.....++.... .-+...+
T Consensus       276 SlWSP~skePLvKiLcH~g~V~siAv~~~G~YMaTtG~Dr--~------------~kIWDlR~~~ql~t~~t-p~~a~~l  340 (545)
T KOG1272|consen  276 SLWSPNSKEPLVKILCHRGPVSSIAVDRGGRYMATTGLDR--K------------VKIWDLRNFYQLHTYRT-PHPASNL  340 (545)
T ss_pred             EecCCCCcchHHHHHhcCCCcceEEECCCCcEEeeccccc--c------------eeEeeeccccccceeec-CCCcccc
Confidence            999999988876664 677999999999999999887543  2            34555543333333322 3456777


Q ss_pred             EECCCCC
Q 021399          295 AFNPDGK  301 (313)
Q Consensus       295 ~fspdgk  301 (313)
                      +||.-|-
T Consensus       341 s~Sqkgl  347 (545)
T KOG1272|consen  341 SLSQKGL  347 (545)
T ss_pred             ccccccc
Confidence            7776543

>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]

Probab=99.14  E-value=4.5e-10  Score=90.89  Aligned_cols=143  Identities=16%  Similarity=0.199  Sum_probs=95.5

Q ss_pred             EEEEccCCCEEEE-eeCCCeEEEEECCCCceeeecccccCceeceEEEEECCCCCEE-EEeeCCCcEEEEECCCCcEEEE
Q 021399          151 RAVWGPLNRTIIS-AGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHF-LTGSLDKSAKLWDARTLELIKT  228 (313)
Q Consensus       151 ~~~~~~~~~~i~t-~~~d~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l-~s~s~dg~i~iwd~~~~~~~~~  228 (313)
                      .+.|..+..++++ ...++.|.+|++....-.+.+.   .....+.+.+|||||.+| .+...|-.|.+|.+.+.++...
T Consensus        53 yieW~ads~~ilC~~yk~~~vqvwsl~Qpew~ckId---eg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~~  129 (447)
T KOG4497|consen   53 YIEWKADSCHILCVAYKDPKVQVWSLVQPEWYCKID---EGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYLL  129 (447)
T ss_pred             heeeeccceeeeeeeeccceEEEEEeecceeEEEec---cCCCcceeeeECCCcceEeeeecceeEEEEEEeccceeEEe
Confidence            3445555555554 4678899999998776555543   235678899999999654 5566799999999999887655


Q ss_pred             EecCCceeEEEeccCCCEEEEcccccCceeEeeccCCCceeeeeeehhhhhhhccccccccceeEEEECCCCCeeEEEE
Q 021399          229 YVTERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKRYGFLL  307 (313)
Q Consensus       229 ~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~fspdgk~~~~~~  307 (313)
                      ......+..++|+|+++..++....|...++           .++....-..++.+.--.-..+.|.|||||..+|..+
T Consensus       130 ~~pK~~~kg~~f~~dg~f~ai~sRrDCkdyv-----------~i~~c~~W~ll~~f~~dT~DltgieWsPdg~~laVwd  197 (447)
T KOG4497|consen  130 PHPKTNVKGYAFHPDGQFCAILSRRDCKDYV-----------QISSCKAWILLKEFKLDTIDLTGIEWSPDGNWLAVWD  197 (447)
T ss_pred             cccccCceeEEECCCCceeeeeecccHHHHH-----------HHHhhHHHHHHHhcCCCcccccCceECCCCcEEEEec
Confidence            4445567899999999988887654432211           1111112223344444455667888888888887654

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=99.14  E-value=1.2e-06  Score=74.68  Aligned_cols=256  Identities=13%  Similarity=0.071  Sum_probs=131.0

Q ss_pred             CCeEEEeCCCCcEEEEecCCCCceEEEEECCCCCeEEEeeC----------CCcEEEEECCCCeEEEEecCCCCe-----
Q 021399           32 HTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSA----------DQTAKLWNVETGAQLFTFNFDSPA-----   96 (313)
Q Consensus        32 ~~i~iw~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~----------D~~v~vWd~~~~~~~~~~~~~~~~-----   96 (313)
                      ++|.+.|.++.+.+.++..-..+-. + ++||++.++.+..          +..|.+||+.+.+.+..+......     
T Consensus        27 ~~v~ViD~~~~~v~g~i~~G~~P~~-~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~  104 (352)
T TIGR02658        27 TQVYTIDGEAGRVLGMTDGGFLPNP-V-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLVG  104 (352)
T ss_pred             ceEEEEECCCCEEEEEEEccCCCce-e-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhcc
Confidence            8999999999999988875333332 4 8999987766654          899999999999988776653332     


Q ss_pred             ---eEEEeecCCeEEEEEC-CCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEccCCCEEEEeeCCCeEEE
Q 021399           97 ---RSVDFAVGDKLAVITT-DPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRI  172 (313)
Q Consensus        97 ---~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~t~~~d~~i~l  172 (313)
                         ..+.++++++.+.+.. ++...    ..+.++.      .++.+..+.-+..  ..+.-.+....++- +.||....
T Consensus       105 ~~~~~~~ls~dgk~l~V~n~~p~~~----V~VvD~~------~~kvv~ei~vp~~--~~vy~t~e~~~~~~-~~Dg~~~~  171 (352)
T TIGR02658       105 TYPWMTSLTPDNKTLLFYQFSPSPA----VGVVDLE------GKAFVRMMDVPDC--YHIFPTANDTFFMH-CRDGSLAK  171 (352)
T ss_pred             CccceEEECCCCCEEEEecCCCCCE----EEEEECC------CCcEEEEEeCCCC--cEEEEecCCccEEE-eecCceEE
Confidence               2667888887766543 21111    1111111      1111111111110  00101111111111 22333322


Q ss_pred             EECCC-Ccee-eecccccCceeceEE-EEECC-CCCEEEEeeCCCcEEEEECC-----CCcEEEEEecC--------Cce
Q 021399          173 WDTET-GKLL-KESDKETGHKKTITS-LAKAA-DGSHFLTGSLDKSAKLWDAR-----TLELIKTYVTE--------RPV  235 (313)
Q Consensus       173 wd~~~-~~~~-~~~~~~~~h~~~v~~-~~~s~-~~~~l~s~s~dg~i~iwd~~-----~~~~~~~~~~~--------~~~  235 (313)
                      ..+.. ++.. .......+....+.. -.+.+ +|..+..... |+|.+.|+.     ..+.+..+...        ...
T Consensus       172 v~~d~~g~~~~~~~~vf~~~~~~v~~rP~~~~~dg~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~  250 (352)
T TIGR02658       172 VGYGTKGNPKIKPTEVFHPEDEYLINHPAYSNKSGRLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGW  250 (352)
T ss_pred             EEecCCCceEEeeeeeecCCccccccCCceEcCCCcEEEEecC-CeEEEEecCCCcceecceeeeccccccccccCCCcc
Confidence            22211 1111 000000000000000 02344 7777666665 999999954     33443333211        112


Q ss_pred             eEEEeccCCCEEEEcccccCceeEeeccCCCceeeeeeehhhhhhhccccccccceeEEEECCCCCeeEEEEE
Q 021399          236 NAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKRYGFLLL  308 (313)
Q Consensus       236 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~fspdgk~~~~~~~  308 (313)
                      .-++++|+++.++++.-...    -+-+..+.-++..+|..+.+.+..+.. ...++.++|+||||...|...
T Consensus       251 q~ia~~~dg~~lyV~~~~~~----~~thk~~~~~V~ViD~~t~kvi~~i~v-G~~~~~iavS~Dgkp~lyvtn  318 (352)
T TIGR02658       251 QQVAYHRARDRIYLLADQRA----KWTHKTASRFLFVVDAKTGKRLRKIEL-GHEIDSINVSQDAKPLLYALS  318 (352)
T ss_pred             eeEEEcCCCCEEEEEecCCc----cccccCCCCEEEEEECCCCeEEEEEeC-CCceeeEEECCCCCeEEEEeC
Confidence            23888999888887421111    011222233556667666666555432 458899999999996666554

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.13  E-value=4.8e-10  Score=99.55  Aligned_cols=238  Identities=16%  Similarity=0.244  Sum_probs=159.9

Q ss_pred             Cccccccccc-ceeEEEEccCC---CEEEEeeCCCCeEEEeCCCC---cEEEEecCCCCceEEEEECCCC-CeEEEeeCC
Q 021399            2 RPILMKGHER-PLTYLKYNKDG---DLLFSCAKDHTPTVWFADNG---ERLGTYRGHNGAVWCCDVSRDS-MTLITGSAD   73 (313)
Q Consensus         2 ~~~~l~~h~~-~v~~~~fs~~g---~~l~s~s~d~~i~iw~~~~~---~~~~~~~~H~~~V~~~~~~~~~-~~l~s~s~D   73 (313)
                      +|+.|+.-+. .|-.+.|+|..   ..+++.+.-+ -.+|+++..   ..--.+.+|..+|+.+.|+|.. ..+++++.|
T Consensus        58 ppr~l~h~tpw~vad~qws~h~a~~~wiVsts~qk-aiiwnlA~ss~~aIef~lhghsraitd~n~~~q~pdVlatcsvd  136 (1081)
T KOG0309|consen   58 PPRWLHHITPWQVADVQWSPHPAKPYWIVSTSNQK-AIIWNLAKSSSNAIEFVLHGHSRAITDINFNPQHPDVLATCSVD  136 (1081)
T ss_pred             CceeeeccCcchhcceecccCCCCceeEEecCcch-hhhhhhhcCCccceEEEEecCccceeccccCCCCCcceeecccc
Confidence            4555554333 35678888764   3677766544 467988754   2344678999999999999865 489999999


Q ss_pred             CcEEEEECCCCeEEEEecCCCCeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEE
Q 021399           74 QTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAV  153 (313)
Q Consensus        74 ~~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~  153 (313)
                      -.+..||+++...        +..+.                                           ..-......+.
T Consensus       137 t~vh~wd~rSp~~--------p~ys~-------------------------------------------~~w~s~asqVk  165 (1081)
T KOG0309|consen  137 TYVHAWDMRSPHR--------PFYST-------------------------------------------SSWRSAASQVK  165 (1081)
T ss_pred             ccceeeeccCCCc--------ceeee-------------------------------------------ecccccCceee
Confidence            9999999886432        11000                                           00112234566


Q ss_pred             EccCCCEEEEeeCCCeEEEEECCCCce-eeecccccCceeceEEEEECC-CCCEEEEeeCCCcEEEEECCC--CcEEEEE
Q 021399          154 WGPLNRTIISAGEDAIVRIWDTETGKL-LKESDKETGHKKTITSLAKAA-DGSHFLTGSLDKSAKLWDART--LELIKTY  229 (313)
Q Consensus       154 ~~~~~~~i~t~~~d~~i~lwd~~~~~~-~~~~~~~~~h~~~v~~~~~s~-~~~~l~s~s~dg~i~iwd~~~--~~~~~~~  229 (313)
                      |+.....++..+....|++||.+.+.. +....   +|-..+..++|.. ....+.+.+.|++|+.||-..  .+.-+..
T Consensus       166 wnyk~p~vlasshg~~i~vwd~r~gs~pl~s~K---~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e~~~~v  242 (1081)
T KOG0309|consen  166 WNYKDPNVLASSHGNDIFVWDLRKGSTPLCSLK---GHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTESKRTV  242 (1081)
T ss_pred             ecccCcchhhhccCCceEEEeccCCCcceEEec---ccceeeehHHHhhhhhhhhcccCCCCceeeecccccccccceec
Confidence            665555666677778899999987654 33332   4777777777653 234589999999999999764  3444555


Q ss_pred             ecCCceeEEEeccCCCEEEEcccccCceeEeeccCCCceeeeeeehhhhhhhccccccccceeEEEE
Q 021399          230 VTERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAF  296 (313)
Q Consensus       230 ~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~f  296 (313)
                      ....++-.-.+-|.++..++-..-+++.+-..+.+.-..++..+|.  .++++.+.||...|...-|
T Consensus       243 tt~~piw~~r~~Pfg~g~~~mp~~G~n~v~~~~c~n~d~e~n~~~~--~~pVh~F~GH~D~V~eFlW  307 (1081)
T KOG0309|consen  243 TTNFPIWRGRYLPFGEGYCIMPMVGGNMVPQLRCENSDLEWNVFDL--NTPVHTFVGHDDVVLEFLW  307 (1081)
T ss_pred             cccCcceeccccccCceeEeccccCCeeeeeccccchhhhhccccC--CcceeeecCcchHHHHHhh
Confidence            5566777777889998887765555566666666665555555554  4567889999888765443

>KOG1334 consensus WD40 repeat protein [General function prediction only]

Probab=99.12  E-value=5.6e-10  Score=94.60  Aligned_cols=218  Identities=17%  Similarity=0.265  Sum_probs=142.1

Q ss_pred             cccccccccceeEEEEccCC-CEEEEeeCCCCeEEEeCCCCcEEE---EecCCCC---ceEEEEECCCCC-eEEEeeCCC
Q 021399            3 PILMKGHERPLTYLKYNKDG-DLLFSCAKDHTPTVWFADNGERLG---TYRGHNG---AVWCCDVSRDSM-TLITGSADQ   74 (313)
Q Consensus         3 ~~~l~~h~~~v~~~~fs~~g-~~l~s~s~d~~i~iw~~~~~~~~~---~~~~H~~---~V~~~~~~~~~~-~l~s~s~D~   74 (313)
                      +..+..|.++|+-++.-|+. ..|.|++.|+.+.=.|+..+..-.   .-+.+..   ....++.+|.+. .|++++.|.
T Consensus       225 t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P~nt~~faVgG~dq  304 (559)
T KOG1334|consen  225 TKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVDPRNTNEFAVGGSDQ  304 (559)
T ss_pred             ceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEecCCCCccccccCChhh
Confidence            45677899999999999876 589999999999988887664322   2234444   457889998765 899999999


Q ss_pred             cEEEEECCCCeEE------EEe-------cCCCCeeEEEee-cCCeEEEEECCCceeccccceeeeeeeCCCCC-CCceE
Q 021399           75 TAKLWNVETGAQL------FTF-------NFDSPARSVDFA-VGDKLAVITTDPFMELNSAIHVKRIARDPADQ-GGESV  139 (313)
Q Consensus        75 ~v~vWd~~~~~~~------~~~-------~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~  139 (313)
                      .++++|.+.-...      ..+       .....+.++.++ .+..+.+...+..+-+.......--..++... .....
T Consensus       305 f~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~~~G~~p~~~s~~~~~~k  384 (559)
T KOG1334|consen  305 FARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDIYLFNKSMGDGSEPDPSSPREQYVK  384 (559)
T ss_pred             hhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeecccceEEeccccccCCCCCCCcchhhccc
Confidence            9999997643211      111       112234555566 33344443333222111110000000000000 01122


Q ss_pred             EEecCCCCc--eEEEE-EccCCCEEEEeeCCCeEEEEECCCCceeeecccccCceeceEEEEECCCCCEEEEeeCCCcEE
Q 021399          140 LILKGPQGR--INRAV-WGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAK  216 (313)
Q Consensus       140 ~~~~~~~~~--i~~~~-~~~~~~~i~t~~~d~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~dg~i~  216 (313)
                      ++.+||.+.  |..+. |.|..+++++|++-|.|-+|+-++++.++-..   +-+..|+|+.-+|--..|||.+.|.-||
T Consensus       385 ~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~eii~~Me---gDr~VVNCLEpHP~~PvLAsSGid~DVK  461 (559)
T KOG1334|consen  385 RVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTGEIIRFME---GDRHVVNCLEPHPHLPVLASSGIDHDVK  461 (559)
T ss_pred             hhhcccccccccceeeeccCccceEEecCccceEEEEecchhHHHHHhh---cccceEeccCCCCCCchhhccCCcccee
Confidence            346777653  55555 46889999999999999999999888776443   3334899999999999999999999999


Q ss_pred             EEECCCC
Q 021399          217 LWDARTL  223 (313)
Q Consensus       217 iwd~~~~  223 (313)
                      ||-..+.
T Consensus       462 IWTP~~~  468 (559)
T KOG1334|consen  462 IWTPLTA  468 (559)
T ss_pred             eecCCcc
Confidence            9987443

>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]

Probab=99.11  E-value=1.2e-07  Score=81.17  Aligned_cols=235  Identities=20%  Similarity=0.297  Sum_probs=143.3

Q ss_pred             cccceeEEEEccCCCEEEEeeCCCCeEEEeCCCCcEEEEecCCCCceEEEEECCCCCeEEEeeCCCc-------------
Q 021399            9 HERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQT-------------   75 (313)
Q Consensus         9 h~~~v~~~~fs~~g~~l~s~s~d~~i~iw~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~-------------   75 (313)
                      -.-++..++|||.|.+|++...- -|.+|+......+..+.  ...|.-+.|+|.+++|.|-+..+.             
T Consensus        31 ~~~p~~~~~~SP~G~~l~~~~~~-~V~~~~g~~~~~l~~~~--~~~V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp~~~~  107 (561)
T COG5354          31 ENWPVAYVSESPLGTYLFSEHAA-GVECWGGPSKAKLVRFR--HPDVKYLDFSPNEKYLVTWSREPIIEPEIEISPFTSK  107 (561)
T ss_pred             cCcchhheeecCcchheehhhcc-ceEEccccchhheeeee--cCCceecccCcccceeeeeccCCccChhhccCCcccc
Confidence            44567889999999999977664 56889887776555554  457889999999999999776544             


Q ss_pred             --EEEEECCCCeEEEEecCCCCe----eEEEeecCCeEEEE---------E-CCCceec----cccceeeeeeeCCC---
Q 021399           76 --AKLWNVETGAQLFTFNFDSPA----RSVDFAVGDKLAVI---------T-TDPFMEL----NSAIHVKRIARDPA---  132 (313)
Q Consensus        76 --v~vWd~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~---------~-~~~~~~~----~~~~~~~~~~~~~~---  132 (313)
                        +.+||+.++..+..+......    ..+.|+.+++.++-         - ++.....    .....+.+....+.   
T Consensus       108 n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARvv~~sl~i~e~t~n~~~~p~~~lr~~gi~dFsisP~~n~  187 (561)
T COG5354         108 NNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDKYVARVVGSSLYIHEITDNIEEHPFKNLRPVGILDFSISPEGNH  187 (561)
T ss_pred             CceeEEeccCceeEeeccccCCcccccceeeeeecchhhhhhccCeEEEEecCCccccCchhhccccceeeEEecCCCCC
Confidence              999999999888776543222    13344444332211         1 1111000    00000111111111   


Q ss_pred             ----------CCCCceEEEecCCCCce-----------EEEEEccCCCEEEEee-----------CCCeEEEEECCCCce
Q 021399          133 ----------DQGGESVLILKGPQGRI-----------NRAVWGPLNRTIISAG-----------EDAIVRIWDTETGKL  180 (313)
Q Consensus       133 ----------~~~~~~~~~~~~~~~~i-----------~~~~~~~~~~~i~t~~-----------~d~~i~lwd~~~~~~  180 (313)
                                ......+..+.-+.+.+           ..+.|++.|++++.--           ....++|+++.....
T Consensus       188 ~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~~qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~~i  267 (561)
T COG5354         188 DELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVSGVQLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITERSI  267 (561)
T ss_pred             ceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEeecccEEEEecCCceEEEEEEEeeecccceeccceEEEEeeccccc
Confidence                      00111122222222211           2466888888765421           124578888763322


Q ss_pred             eeecccccCceeceEEEEECCCCCEEEEee--CCCcEEEEECCCCcEEEEEecCCceeEEEeccCCCEEEEccc
Q 021399          181 LKESDKETGHKKTITSLAKAADGSHFLTGS--LDKSAKLWDARTLELIKTYVTERPVNAVTMSPLLDHVVLGGG  252 (313)
Q Consensus       181 ~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s--~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~  252 (313)
                       + +.  ..-.+.|..++|.|.++.++..+  .+-.+.++|++..  ++-+..++.-+.+.|+|...+++++|-
T Consensus       268 -~-V~--~~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N--l~~~~Pe~~rNT~~fsp~~r~il~agF  335 (561)
T COG5354         268 -P-VE--KDLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN--LRFYFPEQKRNTIFFSPHERYILFAGF  335 (561)
T ss_pred             -c-ee--ccccccceeeeecccCCceeEEecccccceeecccccc--eEEecCCcccccccccCcccEEEEecC
Confidence             1 11  13467899999999988866544  6888999999876  444456677899999999999988753

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=99.10  E-value=1.6e-06  Score=74.98  Aligned_cols=237  Identities=14%  Similarity=0.171  Sum_probs=140.1

Q ss_pred             ceeEEEEccCCCEEEEeeC----CCCeEEEeCCCC--c--EEEEecCCCCceEEEEECCCCCeEEEee-CCCcEEEEECC
Q 021399           12 PLTYLKYNKDGDLLFSCAK----DHTPTVWFADNG--E--RLGTYRGHNGAVWCCDVSRDSMTLITGS-ADQTAKLWNVE   82 (313)
Q Consensus        12 ~v~~~~fs~~g~~l~s~s~----d~~i~iw~~~~~--~--~~~~~~~H~~~V~~~~~~~~~~~l~s~s-~D~~v~vWd~~   82 (313)
                      ....++++|++++|++...    ++.|..|.+...  +  .+.+.......-..++++|++++++++. .+|+|.++++.
T Consensus        38 ~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~  117 (345)
T PF10282_consen   38 NPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCHIAVDPDGRFLYVANYGGGSVSVFPLD  117 (345)
T ss_dssp             SECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCEEEEEECTTSSEEEEEETTTTEEEEEEEC
T ss_pred             CCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCcEEEEEecCCCEEEEEEccCCeEEEEEcc
Confidence            4567899999999999877    468888877654  3  3333432333445689999999888876 58999999997


Q ss_pred             C-CeEEEE---ec-----------CCCCeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEec-CCC
Q 021399           83 T-GAQLFT---FN-----------FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILK-GPQ  146 (313)
Q Consensus        83 ~-~~~~~~---~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~  146 (313)
                      . +.....   ..           .....+.+.+.|+++.+++..-.    ...+...++..  ....-.....+. ...
T Consensus       118 ~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG----~D~v~~~~~~~--~~~~l~~~~~~~~~~G  191 (345)
T PF10282_consen  118 DDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLG----ADRVYVYDIDD--DTGKLTPVDSIKVPPG  191 (345)
T ss_dssp             TTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETT----TTEEEEEEE-T--TS-TEEEEEEEECSTT
T ss_pred             CCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecC----CCEEEEEEEeC--CCceEEEeeccccccC
Confidence            6 433221   21           12346778888887766553211    11111222211  100001111122 122


Q ss_pred             CceEEEEEccCCCEE-EEeeCCCeEEEEECC--CCce--eeecccc-cC--ceeceEEEEECCCCCEEEEee-CCCcEEE
Q 021399          147 GRINRAVWGPLNRTI-ISAGEDAIVRIWDTE--TGKL--LKESDKE-TG--HKKTITSLAKAADGSHFLTGS-LDKSAKL  217 (313)
Q Consensus       147 ~~i~~~~~~~~~~~i-~t~~~d~~i~lwd~~--~~~~--~~~~~~~-~~--h~~~v~~~~~s~~~~~l~s~s-~dg~i~i  217 (313)
                      ..-..+.|+|+++++ ++...++.|.++++.  .+..  ++.+... .+  .......++++|||++|..+. ..+.|.+
T Consensus       192 ~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~v  271 (345)
T PF10282_consen  192 SGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISV  271 (345)
T ss_dssp             SSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEE
T ss_pred             CCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCCEEEE
Confidence            345678899998876 445567889999877  3322  2222111 01  122578899999999977766 4678999


Q ss_pred             EECC--CCc--EEEEEec-CCceeEEEeccCCCEEEEccccc
Q 021399          218 WDAR--TLE--LIKTYVT-ERPVNAVTMSPLLDHVVLGGGQD  254 (313)
Q Consensus       218 wd~~--~~~--~~~~~~~-~~~~~~~~~~p~~~~~~~~~~~~  254 (313)
                      |+++  +++  .+..+.. ....+.++++|+++.++++...+
T Consensus       272 f~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s  313 (345)
T PF10282_consen  272 FDLDPATGTLTLVQTVPTGGKFPRHFAFSPDGRYLYVANQDS  313 (345)
T ss_dssp             EEECTTTTTEEEEEEEEESSSSEEEEEE-TTSSEEEEEETTT
T ss_pred             EEEecCCCceEEEEEEeCCCCCccEEEEeCCCCEEEEEecCC
Confidence            9983  333  3333433 33478999999999999875443

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>KOG2139 consensus WD40 repeat protein [General function prediction only]

Probab=99.10  E-value=6.8e-09  Score=85.16  Aligned_cols=186  Identities=16%  Similarity=0.197  Sum_probs=117.3

Q ss_pred             ceEEEEECCCCCeEEEeeCCCcEEEEECCCCeEEEEecCCCCeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCC
Q 021399           54 AVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPAD  133 (313)
Q Consensus        54 ~V~~~~~~~~~~~l~s~s~D~~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  133 (313)
                      .+..++|++.-..|+.+..|-.|+++|-.+ ++..++..                                         
T Consensus       100 dlr~~aWhqH~~~fava~nddvVriy~kss-t~pt~Lks-----------------------------------------  137 (445)
T KOG2139|consen  100 DLRGVAWHQHIIAFAVATNDDVVRIYDKSS-TCPTKLKS-----------------------------------------  137 (445)
T ss_pred             ceeeEeechhhhhhhhhccCcEEEEeccCC-CCCceecc-----------------------------------------
Confidence            456688888656788888999999988554 21111100                                         


Q ss_pred             CCCceEEEecCCCCceEEEEEccCCC-EEEEeeCCCeEEEEECCCCceee-----------ecccccCceeceEEEEECC
Q 021399          134 QGGESVLILKGPQGRINRAVWGPLNR-TIISAGEDAIVRIWDTETGKLLK-----------ESDKETGHKKTITSLAKAA  201 (313)
Q Consensus       134 ~~~~~~~~~~~~~~~i~~~~~~~~~~-~i~t~~~d~~i~lwd~~~~~~~~-----------~~~~~~~h~~~v~~~~~s~  201 (313)
                                ..+..+.+++|-|.+. .++.|... -|.+|.....-...           .+....+| ..|+++.|.+
T Consensus       138 ----------~sQrnvtclawRPlsaselavgCr~-gIciW~~s~tln~~r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~  205 (445)
T KOG2139|consen  138 ----------VSQRNVTCLAWRPLSASELAVGCRA-GICIWSDSRTLNANRNIRMMSTHHLQVLQDPGH-NPVTSMQWNE  205 (445)
T ss_pred             ----------hhhcceeEEEeccCCcceeeeeecc-eeEEEEcCcccccccccccccccchhheeCCCC-ceeeEEEEcC
Confidence                      0123567777877653 45666654 48899753211111           11122344 6799999999


Q ss_pred             CCCEEEEeeC-CCcEEEEECCCCcEEEEE-ecCCceeEEEeccCCCEEEEcccccCceeEee-ccCCCceeeeeeehhhh
Q 021399          202 DGSHFLTGSL-DKSAKLWDARTLELIKTY-VTERPVNAVTMSPLLDHVVLGGGQDASAVTTT-DHRAGKFEAKFFDKILQ  278 (313)
Q Consensus       202 ~~~~l~s~s~-dg~i~iwd~~~~~~~~~~-~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~  278 (313)
                      ||..+++++. |..|.|||..++.++.-. .....+.-+-|+|+++.++++.-+ . .+.+| ..+       .|-.+. 
T Consensus       206 dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~glgg~slLkwSPdgd~lfaAt~d-a-vfrlw~e~q-------~wt~er-  275 (445)
T KOG2139|consen  206 DGTILVTASFGSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSPDGDVLFAATCD-A-VFRLWQENQ-------SWTKER-  275 (445)
T ss_pred             CCCEEeecccCcceEEEEcCCCCCcccccccCCCceeeEEEcCCCCEEEEeccc-c-eeeeehhcc-------cceecc-
Confidence            9999999986 567999999998876554 334456678999999998876432 2 22233 111       111110 


Q ss_pred             hhhccccccccceeEEEECCCCCeeEEEEE
Q 021399          279 EEIGGVKGHFGPINALAFNPDGKRYGFLLL  308 (313)
Q Consensus       279 ~~~~~~~~h~~~V~~~~fspdgk~~~~~~~  308 (313)
                         +.  .-++.|....|+|+|+.+-|-..
T Consensus       276 ---w~--lgsgrvqtacWspcGsfLLf~~s  300 (445)
T KOG2139|consen  276 ---WI--LGSGRVQTACWSPCGSFLLFACS  300 (445)
T ss_pred             ---ee--ccCCceeeeeecCCCCEEEEEEc
Confidence               11  12568999999999999766543

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=99.10  E-value=8.7e-09  Score=96.42  Aligned_cols=203  Identities=16%  Similarity=0.157  Sum_probs=127.1

Q ss_pred             CCcEEEEecCCCCceEEEEECCCC-CeEEEeeCCCcEEEEECCCCeEEEEecCCCCeeEEEeecCCeEEEEECCCceecc
Q 021399           41 NGERLGTYRGHNGAVWCCDVSRDS-MTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELN  119 (313)
Q Consensus        41 ~~~~~~~~~~H~~~V~~~~~~~~~-~~l~s~s~D~~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  119 (313)
                      .|..+..+..|+..|..++.++.. .+|+|||.||+||+||...-..-.    ......+                    
T Consensus      1037 ~G~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~----~s~rS~l-------------------- 1092 (1431)
T KOG1240|consen 1037 RGILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEG----GSARSEL-------------------- 1092 (1431)
T ss_pred             cceEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCc----ceeeeeE--------------------
Confidence            567888899999999999887654 899999999999999976422100    0000000                    


Q ss_pred             ccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEccCCCEEEEeeCCCeEEEEECCC--Cce-e--eecccccCcee-c
Q 021399          120 SAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTET--GKL-L--KESDKETGHKK-T  193 (313)
Q Consensus       120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~t~~~d~~i~lwd~~~--~~~-~--~~~~~~~~h~~-~  193 (313)
                                           ...--.+++..+...+.+..+|.++.||.|++.++..  ... .  +.........+ .
T Consensus      1093 ---------------------tys~~~sr~~~vt~~~~~~~~Av~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~v 1151 (1431)
T KOG1240|consen 1093 ---------------------TYSPEGSRVEKVTMCGNGDQFAVSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVV 1151 (1431)
T ss_pred             ---------------------EEeccCCceEEEEeccCCCeEEEEcCCCeEEEEEccccccccceeeeeecccccCCCce
Confidence                                 0000124556666777788999999999999998764  111 1  11111111122 2


Q ss_pred             eEEEEECC-CCC-EEEEeeCCCcEEEEECCCCcEEEEEe---cCCceeEEEeccCCCEEEEcccccCceeEeeccCCCce
Q 021399          194 ITSLAKAA-DGS-HFLTGSLDKSAKLWDARTLELIKTYV---TERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKF  268 (313)
Q Consensus       194 v~~~~~s~-~~~-~l~s~s~dg~i~iwd~~~~~~~~~~~---~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~  268 (313)
                      +...++.. .++ .++.+..-+.|..||+++......+.   .++.+.+++.+|.+..+++|..  .+.+..||.|.+..
T Consensus      1152 v~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~hG~vTSi~idp~~~WlviGts--~G~l~lWDLRF~~~ 1229 (1431)
T KOG1240|consen 1152 VSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQLRHGLVTSIVIDPWCNWLVIGTS--RGQLVLWDLRFRVP 1229 (1431)
T ss_pred             EEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcCccccceeEEEecCCceEEEEecC--CceEEEEEeecCce
Confidence            33334432 233 67788888899999999877665553   3457899999999997777543  34577888776543


Q ss_pred             eeeeeehhhhhhhccccccccceeEEEECCCCC
Q 021399          269 EAKFFDKILQEEIGGVKGHFGPINALAFNPDGK  301 (313)
Q Consensus       269 ~~~~~~~~~~~~~~~~~~h~~~V~~~~fspdgk  301 (313)
                       +..|..          .|..+|..+..+|--+
T Consensus      1230 -i~sw~~----------P~~~~i~~v~~~~~~~ 1251 (1431)
T KOG1240|consen 1230 -ILSWEH----------PARAPIRHVWLCPTYP 1251 (1431)
T ss_pred             -eecccC----------cccCCcceEEeeccCC
Confidence             344432          2335555555555433

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=99.09  E-value=1.2e-06  Score=74.88  Aligned_cols=108  Identities=19%  Similarity=0.171  Sum_probs=76.8

Q ss_pred             eeceEEEEECCCCCEEEEeeCCC-cEEEEECCCCcEEEEEecCCceeEEEeccCCCEEEEcccccCceeEeeccCCCcee
Q 021399          191 KKTITSLAKAADGSHFLTGSLDK-SAKLWDARTLELIKTYVTERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFE  269 (313)
Q Consensus       191 ~~~v~~~~~s~~~~~l~s~s~dg-~i~iwd~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~  269 (313)
                      .+.|+=..+..+++-++.|..|| .+-++|.++++..+....-..+.++..+|+|..++++-  +            +++
T Consensus       359 ~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~kr~e~~lg~I~av~vs~dGK~~vvaN--d------------r~e  424 (668)
T COG4946         359 KGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEVKRIEKDLGNIEAVKVSPDGKKVVVAN--D------------RFE  424 (668)
T ss_pred             CCceEEEEEccCCcceEEeccCCceEEEEecCCceEEEeeCCccceEEEEEcCCCcEEEEEc--C------------ceE
Confidence            33444445566666788899998 89999999988766555566799999999999877753  2            345


Q ss_pred             eeeeehhhhhhhccccccccceeEEEECCCCCeeEEEEEEEee
Q 021399          270 AKFFDKILQEEIGGVKGHFGPINALAFNPDGKRYGFLLLQINV  312 (313)
Q Consensus       270 ~~~~~~~~~~~~~~~~~h~~~V~~~~fspdgk~~~~~~~~~~~  312 (313)
                      +...|..+++...--+..-+-|+..+|||+++.+||-+--+|+
T Consensus       425 l~vididngnv~~idkS~~~lItdf~~~~nsr~iAYafP~gy~  467 (668)
T COG4946         425 LWVIDIDNGNVRLIDKSEYGLITDFDWHPNSRWIAYAFPEGYY  467 (668)
T ss_pred             EEEEEecCCCeeEecccccceeEEEEEcCCceeEEEecCccee
Confidence            5555555444322223345789999999999999998765543

>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=99.08  E-value=3.7e-10  Score=64.18  Aligned_cols=38  Identities=32%  Similarity=0.576  Sum_probs=36.4

Q ss_pred             cEEEEecCCCCceEEEEECCCCCeEEEeeCCCcEEEEE
Q 021399           43 ERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWN   80 (313)
Q Consensus        43 ~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~v~vWd   80 (313)
                      +++.++++|.++|++++|+|+++.|+|++.|++|++||
T Consensus         2 ~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd   39 (39)
T PF00400_consen    2 KCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD   39 (39)
T ss_dssp             EEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred             eEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence            57889999999999999999999999999999999997

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....

>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]

Probab=99.07  E-value=7.8e-08  Score=83.22  Aligned_cols=269  Identities=13%  Similarity=0.179  Sum_probs=155.9

Q ss_pred             ceeEEEEccCCCEEEEeeC-----------CCCeEEEeCCCCcEEEEecC--CCCceEE-EEECCCCCeEEEeeCCCcEE
Q 021399           12 PLTYLKYNKDGDLLFSCAK-----------DHTPTVWFADNGERLGTYRG--HNGAVWC-CDVSRDSMTLITGSADQTAK   77 (313)
Q Consensus        12 ~v~~~~fs~~g~~l~s~s~-----------d~~i~iw~~~~~~~~~~~~~--H~~~V~~-~~~~~~~~~l~s~s~D~~v~   77 (313)
                      .|..+.|||..++|+|=|.           ...++|||+.+|...+.|..  -...+|. ..||.|++++|--.. ..|.
T Consensus       251 ~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~-~sis  329 (698)
T KOG2314|consen  251 GVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIATGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTG-NSIS  329 (698)
T ss_pred             CceeeecCCccceEEEecCCccccCcccCCCceEEEEEccccchhcceeccCCCccccceEEeccCCceeEEecc-ceEE
Confidence            4788999999999999653           26789999999999888876  3344554 579999998875444 5788


Q ss_pred             EEECCCCeEEEEecC-CCCeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEcc
Q 021399           78 LWNVETGAQLFTFNF-DSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGP  156 (313)
Q Consensus        78 vWd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~  156 (313)
                      |++..+..+.-.... ...+..+.|+|.+.+++..+...........+..+..      ...+..-.-++-.=..+-|..
T Consensus       330 IyEtpsf~lld~Kslki~gIr~FswsP~~~llAYwtpe~~~~parvtL~evPs------~~~iRt~nlfnVsDckLhWQk  403 (698)
T KOG2314|consen  330 IYETPSFMLLDKKSLKISGIRDFSWSPTSNLLAYWTPETNNIPARVTLMEVPS------KREIRTKNLFNVSDCKLHWQK  403 (698)
T ss_pred             EEecCceeeecccccCCccccCcccCCCcceEEEEcccccCCcceEEEEecCc------cceeeeccceeeeccEEEecc
Confidence            998766443322222 3456778889988877765543221111111111111      111111111111112234566


Q ss_pred             CCCEEEE----------eeCCCeEEEEECCCCce-eeecccccCceeceEEEEECCCCCEEEEeeC---CCcEEEEECCC
Q 021399          157 LNRTIIS----------AGEDAIVRIWDTETGKL-LKESDKETGHKKTITSLAKAADGSHFLTGSL---DKSAKLWDART  222 (313)
Q Consensus       157 ~~~~i~t----------~~~d~~i~lwd~~~~~~-~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~---dg~i~iwd~~~  222 (313)
                      +|.+++.          .|.-..+.|+.++.+.. +..+    .-+..|.+.+|-|.|+.++.-+.   ..++.+|-+++
T Consensus       404 ~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKdIpve~v----elke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~  479 (698)
T KOG2314|consen  404 SGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKDIPVEVV----ELKESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVET  479 (698)
T ss_pred             CCcEEEEEEEeeccccccceEeeEEEEEeeccCCCceee----ecchheeeeeeccCCCeEEEEEccccccceeEEEeec
Confidence            6666553          12222355665543321 1111    23567899999999998776553   45688887774


Q ss_pred             C----cEEEEEecCCceeEEEeccCCCEEEEcccccCceeEeeccCCCceeeeeeehh--hhhhhccccccccceeEEEE
Q 021399          223 L----ELIKTYVTERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKI--LQEEIGGVKGHFGPINALAF  296 (313)
Q Consensus       223 ~----~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~h~~~V~~~~f  296 (313)
                      .    +++.++ .....+.+.|+|.|..+++++--.         +  .....|+|..  ..+..+.. .|. .-+.+.|
T Consensus       480 ~~~~~~lVk~~-dk~~~N~vfwsPkG~fvvva~l~s---------~--~g~l~F~D~~~a~~k~~~~~-eh~-~at~veW  545 (698)
T KOG2314|consen  480 NIKKPSLVKEL-DKKFANTVFWSPKGRFVVVAALVS---------R--RGDLEFYDTDYADLKDTASP-EHF-AATEVEW  545 (698)
T ss_pred             CCCchhhhhhh-cccccceEEEcCCCcEEEEEEecc---------c--ccceEEEecchhhhhhccCc-ccc-ccccceE
Confidence            2    233333 235688999999999888764211         1  1123455543  22222221 243 3478899


Q ss_pred             CCCCCeeEE
Q 021399          297 NPDGKRYGF  305 (313)
Q Consensus       297 spdgk~~~~  305 (313)
                      .|.||++.=
T Consensus       546 DPtGRYvvT  554 (698)
T KOG2314|consen  546 DPTGRYVVT  554 (698)
T ss_pred             CCCCCEEEE
Confidence            999999653

>KOG3881 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.04  E-value=1.1e-07  Score=78.78  Aligned_cols=228  Identities=14%  Similarity=0.126  Sum_probs=141.5

Q ss_pred             cceeEEEEccC--CCEEEEeeCCCCeEEEeCCCCcEEEE------ecCCCCceEEEEECCCCCeEEEeeCCCcEEEEECC
Q 021399           11 RPLTYLKYNKD--GDLLFSCAKDHTPTVWFADNGERLGT------YRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVE   82 (313)
Q Consensus        11 ~~v~~~~fs~~--g~~l~s~s~d~~i~iw~~~~~~~~~~------~~~H~~~V~~~~~~~~~~~l~s~s~D~~v~vWd~~   82 (313)
                      ..+..++|--+  .+.|..++.|..+.............      ....+++|-.+...  +..|++|-.+|.+++|...
T Consensus        56 ~ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~~s~~~~~~~~~l~~~~I~gl~~~--dg~Litc~~sG~l~~~~~k  133 (412)
T KOG3881|consen   56 DRISSLLFGVDGETEVLNARSADDDLPKFVIEEFEISSSLDDAKTVSLGTKSIKGLKLA--DGTLITCVSSGNLQVRHDK  133 (412)
T ss_pred             hhhhhheeecCCceeEeeccccCcccccccccCCccccccccccccccccccccchhhc--CCEEEEEecCCcEEEEecc
Confidence            34556667544  45777777888888777666554332      23445566655543  3478899999999999987


Q ss_pred             CCe----EEEEecCCCCeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCC---------Cce
Q 021399           83 TGA----QLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQ---------GRI  149 (313)
Q Consensus        83 ~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~i  149 (313)
                      .+.    ....+....+...+.-++....+++......  -....+|++...      ..+-.-+...         -.+
T Consensus       134 ~~d~hss~l~~la~g~g~~~~r~~~~~p~Iva~GGke~--~n~lkiwdle~~------~qiw~aKNvpnD~L~LrVPvW~  205 (412)
T KOG3881|consen  134 SGDLHSSKLIKLATGPGLYDVRQTDTDPYIVATGGKEN--INELKIWDLEQS------KQIWSAKNVPNDRLGLRVPVWI  205 (412)
T ss_pred             CCccccccceeeecCCceeeeccCCCCCceEecCchhc--ccceeeeecccc------eeeeeccCCCCccccceeeeee
Confidence            433    1222233334444444444333333222210  011122222111      0110000000         123


Q ss_pred             EEEEEccC--CCEEEEeeCCCeEEEEECCCC-ceeeecccccCceeceEEEEECCCCCEEEEeeCCCcEEEEECCCCcEE
Q 021399          150 NRAVWGPL--NRTIISAGEDAIVRIWDTETG-KLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELI  226 (313)
Q Consensus       150 ~~~~~~~~--~~~i~t~~~d~~i~lwd~~~~-~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~  226 (313)
                      ..+.|-+.  ...|++++.-+.+|+||++.+ +++..+..   -...++++...|.+++|++|..-+.+..||+++++..
T Consensus       206 tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~---~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~  282 (412)
T KOG3881|consen  206 TDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDF---LENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGGKLL  282 (412)
T ss_pred             ccceecCCCCCceEEEEecceeEEEecCcccCcceeEecc---ccCcceeeeecCCCcEEEEecccchhheecccCceee
Confidence            56667666  678999999999999998754 34555442   3568999999999999999999999999999999887


Q ss_pred             EEE-e-cCCceeEEEeccCCCEEEEcc
Q 021399          227 KTY-V-TERPVNAVTMSPLLDHVVLGG  251 (313)
Q Consensus       227 ~~~-~-~~~~~~~~~~~p~~~~~~~~~  251 (313)
                      ... . ..+.+..+-.+|....++.+|
T Consensus       283 g~~~kg~tGsirsih~hp~~~~las~G  309 (412)
T KOG3881|consen  283 GCGLKGITGSIRSIHCHPTHPVLASCG  309 (412)
T ss_pred             ccccCCccCCcceEEEcCCCceEEeec
Confidence            663 2 246788999999887766554

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=99.03  E-value=1.4e-06  Score=71.88  Aligned_cols=251  Identities=14%  Similarity=0.139  Sum_probs=146.4

Q ss_pred             ccccccccceeEEEEccCCCEEEEeeCC---CCeEEEeCCC--CcEE--EEecCCCCceEEEEECCCCCeEEEee-CCCc
Q 021399            4 ILMKGHERPLTYLKYNKDGDLLFSCAKD---HTPTVWFADN--GERL--GTYRGHNGAVWCCDVSRDSMTLITGS-ADQT   75 (313)
Q Consensus         4 ~~l~~h~~~v~~~~fs~~g~~l~s~s~d---~~i~iw~~~~--~~~~--~~~~~H~~~V~~~~~~~~~~~l~s~s-~D~~   75 (313)
                      +.+..+...++-++|+|+.++|+++-.+   |.|--|.++.  |++-  .....-..+-.-++++++|++++++. .-|.
T Consensus        33 ~~~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yvsvd~~g~~vf~AnY~~g~  112 (346)
T COG2706          33 LQLVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYVSVDEDGRFVFVANYHSGS  112 (346)
T ss_pred             hhhccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEEEECCCCCEEEEEEccCce
Confidence            3455667778899999999999998654   6677776664  5432  11111122236689999999988886 3477


Q ss_pred             EEEEECCC-CeEEEEecCCCCeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEE
Q 021399           76 AKLWNVET-GAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVW  154 (313)
Q Consensus        76 v~vWd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~  154 (313)
                      |.++-+.+ |.......      .+                             ....  .+ +...  --...+....+
T Consensus       113 v~v~p~~~dG~l~~~v~------~~-----------------------------~h~g--~~-p~~r--Q~~~h~H~a~~  152 (346)
T COG2706         113 VSVYPLQADGSLQPVVQ------VV-----------------------------KHTG--SG-PHER--QESPHVHSANF  152 (346)
T ss_pred             EEEEEcccCCcccccee------ee-----------------------------ecCC--CC-CCcc--ccCCccceeee
Confidence            77776643 22110000      00                             0000  00 0000  00123667889


Q ss_pred             ccCCCEEEEee-CCCeEEEEECCCCceeeecccccCceeceEEEEECCCCCEEEEeeC-CCcEEEEECCCC-c---EEEE
Q 021399          155 GPLNRTIISAG-EDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSL-DKSAKLWDARTL-E---LIKT  228 (313)
Q Consensus       155 ~~~~~~i~t~~-~d~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~-dg~i~iwd~~~~-~---~~~~  228 (313)
                      .|+++++++.. ..-+|.+|++..+++.........-....+.+.|+|++++...... +++|.+|..... .   .++.
T Consensus       153 tP~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~  232 (346)
T COG2706         153 TPDGRYLVVPDLGTDRIFLYDLDDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQT  232 (346)
T ss_pred             CCCCCEEEEeecCCceEEEEEcccCccccccccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeee
Confidence            99999888774 3346899999987754332222233566789999999999887774 899999987763 2   2222


Q ss_pred             Ee-------cCCceeEEEeccCCCEEEEcccc-cCceeEeeccCCCceeeeeeehhhhhhhccccccccceeEEEECCCC
Q 021399          229 YV-------TERPVNAVTMSPLLDHVVLGGGQ-DASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDG  300 (313)
Q Consensus       229 ~~-------~~~~~~~~~~~p~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~fspdg  300 (313)
                      +.       ......++.++|+|..++++-.. +...+..-|...+.++..-+-          ..+...--+..|+|+|
T Consensus       233 i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~----------~teg~~PR~F~i~~~g  302 (346)
T COG2706         233 IDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSIAVFSVDPDGGKLELVGIT----------PTEGQFPRDFNINPSG  302 (346)
T ss_pred             eccCccccCCCCceeEEEECCCCCEEEEecCCCCeEEEEEEcCCCCEEEEEEEe----------ccCCcCCccceeCCCC
Confidence            21       12346678899999998887432 222222223333333321111          1122223566788888


Q ss_pred             CeeE
Q 021399          301 KRYG  304 (313)
Q Consensus       301 k~~~  304 (313)
                      +.+.
T Consensus       303 ~~Li  306 (346)
T COG2706         303 RFLI  306 (346)
T ss_pred             CEEE
Confidence            7653

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=99.03  E-value=5.7e-08  Score=86.50  Aligned_cols=275  Identities=15%  Similarity=0.175  Sum_probs=169.2

Q ss_pred             ceeEEEEccCCCEEEEeeCCCCeEEEeCCCCcE---------------EEEecCCCCceEEEEECCCCCeEEEeeCCCcE
Q 021399           12 PLTYLKYNKDGDLLFSCAKDHTPTVWFADNGER---------------LGTYRGHNGAVWCCDVSRDSMTLITGSADQTA   76 (313)
Q Consensus        12 ~v~~~~fs~~g~~l~s~s~d~~i~iw~~~~~~~---------------~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~v   76 (313)
                      ...|+.|+.+..+|+.|+.||.++|-.+.+.+.               -.+++||.+.|..+.|+.+.+.|-|...+|.|
T Consensus        16 kL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt~GlI   95 (1189)
T KOG2041|consen   16 KLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSDTSGLI   95 (1189)
T ss_pred             eEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccccccccCCCceE
Confidence            468999999999999999999999996664321               13678999999999999999999999999999


Q ss_pred             EEEECCCCeEEE-Eec--CCCCeeEEEeec-CCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEE
Q 021399           77 KLWNVETGAQLF-TFN--FDSPARSVDFAV-GDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRA  152 (313)
Q Consensus        77 ~vWd~~~~~~~~-~~~--~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~  152 (313)
                      .+|-+-.+.=.. ..+  ..+.+.++.|.. +.+++++..++...+-. ..-.+++. .         .+++  .....+
T Consensus        96 iVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGs-vdGNRIwg-K---------eLkg--~~l~hv  162 (1189)
T KOG2041|consen   96 IVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGS-VDGNRIWG-K---------ELKG--QLLAHV  162 (1189)
T ss_pred             EEEeeecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEe-eccceecc-h---------hcch--heccce
Confidence            999874432100 001  112344555553 45555554443221110 01111110 0         0011  112357


Q ss_pred             EEccCCCEEEEeeCCCeEEEEECCCCcee-----eeccc---ccCceeceEEEEE--------CCCCCEEEEeeCCCcEE
Q 021399          153 VWGPLNRTIISAGEDAIVRIWDTETGKLL-----KESDK---ETGHKKTITSLAK--------AADGSHFLTGSLDKSAK  216 (313)
Q Consensus       153 ~~~~~~~~i~t~~~d~~i~lwd~~~~~~~-----~~~~~---~~~h~~~v~~~~~--------s~~~~~l~s~s~dg~i~  216 (313)
                      .|+++.+.++.+-..|.++++|.+-.-.+     +.+..   .+.....+..+.|        -||...++.+...|.+.
T Consensus       163 ~ws~D~~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~nGr~Q  242 (1189)
T KOG2041|consen  163 LWSEDLEQALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYANGRMQ  242 (1189)
T ss_pred             eecccHHHHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEEEEcCceeh
Confidence            79999888888888999999996532111     00110   0111112334443        36888899999999888


Q ss_pred             EEECCC-CcEEEEEecCCceeEEEeccCCCEEEEcccccCceeEeeccCCCceeeeeeehhhhhhhccccccccceeEEE
Q 021399          217 LWDART-LELIKTYVTERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALA  295 (313)
Q Consensus       217 iwd~~~-~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~  295 (313)
                      |-.-+. .+++. +..+..+..+.|++.|..++++|-+.+..     .......+.|+. .-+..++.++--..-|+++.
T Consensus       243 iMR~eND~~Pvv-~dtgm~~vgakWnh~G~vLAvcG~~~da~-----~~~d~n~v~Fys-p~G~i~gtlkvpg~~It~ls  315 (1189)
T KOG2041|consen  243 IMRSENDPEPVV-VDTGMKIVGAKWNHNGAVLAVCGNDSDAD-----EPTDSNKVHFYS-PYGHIVGTLKVPGSCITGLS  315 (1189)
T ss_pred             hhhhcCCCCCeE-EecccEeecceecCCCcEEEEccCccccc-----CccccceEEEec-cchhheEEEecCCceeeeeE
Confidence            764332 33322 22335677889999999888876443221     111112233432 34666666776678999999


Q ss_pred             ECCCCCeeEEE
Q 021399          296 FNPDGKRYGFL  306 (313)
Q Consensus       296 fspdgk~~~~~  306 (313)
                      |-..|-++|+-
T Consensus       316 WEg~gLriA~A  326 (1189)
T KOG2041|consen  316 WEGTGLRIAIA  326 (1189)
T ss_pred             EcCCceEEEEE
Confidence            99888888764

>KOG3914 consensus WD repeat protein WDR4 [Function unknown]

Probab=99.00  E-value=8.2e-09  Score=85.71  Aligned_cols=85  Identities=24%  Similarity=0.348  Sum_probs=68.4

Q ss_pred             cCCCCceEEEEEccCCCEEEEeeCCCeEEEEECCCCceeeecccccCceeceEEEEECCCCCEEEEeeCCCcEEEEECCC
Q 021399          143 KGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDART  222 (313)
Q Consensus       143 ~~~~~~i~~~~~~~~~~~i~t~~~d~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~dg~i~iwd~~~  222 (313)
                      -||-+-+..+.|+|++++|+++..|..||+-.......+..  ...||+.-|..++.-++ ..|+|+|-|+++++||.++
T Consensus       148 lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~Ies--fclGH~eFVS~isl~~~-~~LlS~sGD~tlr~Wd~~s  224 (390)
T KOG3914|consen  148 LGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIES--FCLGHKEFVSTISLTDN-YLLLSGSGDKTLRLWDITS  224 (390)
T ss_pred             hhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhh--hccccHhheeeeeeccC-ceeeecCCCCcEEEEeccc
Confidence            46777889999999999999999999999866543222222  23579999999998765 4599999999999999999


Q ss_pred             CcEEEEEe
Q 021399          223 LELIKTYV  230 (313)
Q Consensus       223 ~~~~~~~~  230 (313)
                      ++++.++.
T Consensus       225 gk~L~t~d  232 (390)
T KOG3914|consen  225 GKLLDTCD  232 (390)
T ss_pred             CCcccccc
Confidence            98876653

>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]

Probab=98.98  E-value=1.1e-09  Score=99.14  Aligned_cols=216  Identities=16%  Similarity=0.175  Sum_probs=143.7

Q ss_pred             cccccccceeEEEEccCCCEEEEeeCCCCeEEEeCCCCcEEEEecCCCCceEEEEECCCCCeEEEeeC--CCcEEEEECC
Q 021399            5 LMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSA--DQTAKLWNVE   82 (313)
Q Consensus         5 ~l~~h~~~v~~~~fs~~g~~l~s~s~d~~i~iw~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~--D~~v~vWd~~   82 (313)
                      +++.|....+|++|+.+.++|+.|+..|.|+++++.+|.......+|..+|+-+.=+.+|..+++.+.  .....+|++.
T Consensus      1096 ~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~PlsaLW~~~ 1175 (1516)
T KOG1832|consen 1096 SFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLSALWDAS 1175 (1516)
T ss_pred             hhhccccceeeEEeecCCceEEeeeccceEEEEEccCccccccccccccccccccccCCcceeeeeccccCchHHHhccc
Confidence            77889999999999999999999999999999999999988899999999998887778876655442  3356788875


Q ss_pred             CC-eEEEEecCCCCeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEccCCCEE
Q 021399           83 TG-AQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTI  161 (313)
Q Consensus        83 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i  161 (313)
                      +- .....+.                                                        .-..+.|+.....-
T Consensus      1176 s~~~~~Hsf~--------------------------------------------------------ed~~vkFsn~~q~r 1199 (1516)
T KOG1832|consen 1176 STGGPRHSFD--------------------------------------------------------EDKAVKFSNSLQFR 1199 (1516)
T ss_pred             cccCcccccc--------------------------------------------------------ccceeehhhhHHHH
Confidence            41 1111000                                                        00011122111111


Q ss_pred             EEeeCCCeEEEEECCCCceeeec-ccccCceeceEEEEECCCCCEEEEeeCCCcEEEEECCCCcEEEEEecCCceeEEEe
Q 021399          162 ISAGEDAIVRIWDTETGKLLKES-DKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTERPVNAVTM  240 (313)
Q Consensus       162 ~t~~~d~~i~lwd~~~~~~~~~~-~~~~~h~~~v~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~  240 (313)
                      +.|.......|||++++..+.+. ....+.+..-+...|+|+...|+   .||  .+||.+..+.+..+..-..-..-.|
T Consensus      1200 ~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D~LIl---ndG--vLWDvR~~~aIh~FD~ft~~~~G~F 1274 (1516)
T KOG1832|consen 1200 ALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCDTLIL---NDG--VLWDVRIPEAIHRFDQFTDYGGGGF 1274 (1516)
T ss_pred             HhcccccceEEEecccCcHHHHhcCcchhhhhhccccccCCCcceEe---eCc--eeeeeccHHHHhhhhhheecccccc
Confidence            22333355789999998877662 22222233346778999988776   344  3899998877766533222234568


Q ss_pred             ccCCCEEEEcccccCceeEeeccCCCceeeeeeehhhhhhhccccccccceeEEEECCCCCe
Q 021399          241 SPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKR  302 (313)
Q Consensus       241 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~fspdgk~  302 (313)
                      ||.+..+++-                   ..+||..+.+.++....  -.-..+.|+..|..
T Consensus      1275 HP~g~eVIIN-------------------SEIwD~RTF~lLh~VP~--Ldqc~VtFNstG~V 1315 (1516)
T KOG1832|consen 1275 HPSGNEVIIN-------------------SEIWDMRTFKLLHSVPS--LDQCAVTFNSTGDV 1315 (1516)
T ss_pred             cCCCceEEee-------------------chhhhhHHHHHHhcCcc--ccceEEEeccCccc
Confidence            9998888763                   24688888777654432  23367889888876

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=98.97  E-value=3.6e-06  Score=72.79  Aligned_cols=208  Identities=14%  Similarity=0.166  Sum_probs=123.4

Q ss_pred             eeEEEEccCCCEEEEee-CCCCeEEEeCCC-CcEEEE---ec----------CCCCceEEEEECCCCCeEEEee-CCCcE
Q 021399           13 LTYLKYNKDGDLLFSCA-KDHTPTVWFADN-GERLGT---YR----------GHNGAVWCCDVSRDSMTLITGS-ADQTA   76 (313)
Q Consensus        13 v~~~~fs~~g~~l~s~s-~d~~i~iw~~~~-~~~~~~---~~----------~H~~~V~~~~~~~~~~~l~s~s-~D~~v   76 (313)
                      .-.++++|++++|+++. .++.|.+++++. +.....   +.          .-.....++.++|++++++... ....|
T Consensus        89 p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v  168 (345)
T PF10282_consen   89 PCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRV  168 (345)
T ss_dssp             EEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEE
T ss_pred             cEEEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEE
Confidence            35689999999999987 489999999987 433221   21          1123467899999999777654 34579


Q ss_pred             EEEECCCCe--EEE----EecCCCCeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEec----CCC
Q 021399           77 KLWNVETGA--QLF----TFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILK----GPQ  146 (313)
Q Consensus        77 ~vWd~~~~~--~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~  146 (313)
                      .+|++....  ...    ........+.+.|+++.+.+.+....    ...+...++..  .......+....    +..
T Consensus       169 ~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~----s~~v~v~~~~~--~~g~~~~~~~~~~~~~~~~  242 (345)
T PF10282_consen  169 YVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNEL----SNTVSVFDYDP--SDGSLTEIQTISTLPEGFT  242 (345)
T ss_dssp             EEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETT----TTEEEEEEEET--TTTEEEEEEEEESCETTSC
T ss_pred             EEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCC----CCcEEEEeecc--cCCceeEEEEeeecccccc
Confidence            999987654  322    22345667888999988777665431    11111111110  000000111111    111


Q ss_pred             --CceEEEEEccCCCEEEEee-CCCeEEEEECC--CCceeeecccccCceeceEEEEECCCCCEEEEee-CCCcEEEEEC
Q 021399          147 --GRINRAVWGPLNRTIISAG-EDAIVRIWDTE--TGKLLKESDKETGHKKTITSLAKAADGSHFLTGS-LDKSAKLWDA  220 (313)
Q Consensus       147 --~~i~~~~~~~~~~~i~t~~-~d~~i~lwd~~--~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s-~dg~i~iwd~  220 (313)
                        .....+.++|+++++.++. ..+.|.+|++.  ++++ ..+..........+.++++|+|++|+++. .++.|.+|++
T Consensus       243 ~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l-~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~  321 (345)
T PF10282_consen  243 GENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTL-TLVQTVPTGGKFPRHFAFSPDGRYLYVANQDSNTVSVFDI  321 (345)
T ss_dssp             SSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTE-EEEEEEEESSSSEEEEEE-TTSSEEEEEETTTTEEEEEEE
T ss_pred             ccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCce-EEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCeEEEEEE
Confidence              2467888999999876654 56789999983  3333 22222112234578999999999999887 4678999865


Q ss_pred             --CCCcEEE
Q 021399          221 --RTLELIK  227 (313)
Q Consensus       221 --~~~~~~~  227 (313)
                        +++.+..
T Consensus       322 d~~tG~l~~  330 (345)
T PF10282_consen  322 DPDTGKLTP  330 (345)
T ss_dssp             ETTTTEEEE
T ss_pred             eCCCCcEEE
Confidence              5666543

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>PRK04043 tolB translocation protein TolB; Provisional

Probab=98.94  E-value=2e-06  Score=76.01  Aligned_cols=180  Identities=11%  Similarity=0.050  Sum_probs=109.9

Q ss_pred             ceeEEEEccCCCE-EEEeeCC---CCeEEEeCCCCcEEEEecCCCCceEEEEECCCCCeE-EEeeCCC--cEEEEECCCC
Q 021399           12 PLTYLKYNKDGDL-LFSCAKD---HTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTL-ITGSADQ--TAKLWNVETG   84 (313)
Q Consensus        12 ~v~~~~fs~~g~~-l~s~s~d---~~i~iw~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l-~s~s~D~--~v~vWd~~~~   84 (313)
                      ....-+|||||+. ++..+.+   ..|.++|+.+++..... ...+.+....|+|||+.+ ++.+.++  .|.++|+.++
T Consensus       189 ~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt-~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g  267 (419)
T PRK04043        189 LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIA-SSQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNTK  267 (419)
T ss_pred             CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEe-cCCCcEEeeEECCCCCEEEEEEccCCCcEEEEEECCCC
Confidence            5678999999985 6655544   45777788888654333 345566778899999754 4544443  3444455544


Q ss_pred             eEEEEecCCCCeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEccCCCEEEEe
Q 021399           85 AQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISA  164 (313)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~t~  164 (313)
                      +......                                                     +.+......|+|+|+.|+..
T Consensus       268 ~~~~LT~-----------------------------------------------------~~~~d~~p~~SPDG~~I~F~  294 (419)
T PRK04043        268 TLTQITN-----------------------------------------------------YPGIDVNGNFVEDDKRIVFV  294 (419)
T ss_pred             cEEEccc-----------------------------------------------------CCCccCccEECCCCCEEEEE
Confidence            3221100                                                     00011123588888877665


Q ss_pred             eC-CC--eEEEEECCCCceeeecccccCceeceEEEEECCCCCEEEEeeCC---------CcEEEEECCCCcEEEEEecC
Q 021399          165 GE-DA--IVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLD---------KSAKLWDARTLELIKTYVTE  232 (313)
Q Consensus       165 ~~-d~--~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d---------g~i~iwd~~~~~~~~~~~~~  232 (313)
                      ++ .+  .|.+.|+..++..+ +.. .+.  .  ...|+|||+.|+-.+..         ..|.+.|+++++. +.+...
T Consensus       295 Sdr~g~~~Iy~~dl~~g~~~r-lt~-~g~--~--~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~-~~LT~~  367 (419)
T PRK04043        295 SDRLGYPNIFMKKLNSGSVEQ-VVF-HGK--N--NSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYI-RRLTAN  367 (419)
T ss_pred             ECCCCCceEEEEECCCCCeEe-Ccc-CCC--c--CceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCe-EECCCC
Confidence            53 22  57888887766433 221 111  1  24899999998877654         2678889888765 444433


Q ss_pred             CceeEEEeccCCCEEEEccc
Q 021399          233 RPVNAVTMSPLLDHVVLGGG  252 (313)
Q Consensus       233 ~~~~~~~~~p~~~~~~~~~~  252 (313)
                      .......|+|++..++.+..
T Consensus       368 ~~~~~p~~SPDG~~I~f~~~  387 (419)
T PRK04043        368 GVNQFPRFSSDGGSIMFIKY  387 (419)
T ss_pred             CCcCCeEECCCCCEEEEEEc
Confidence            34446889999998877643

>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]

Probab=98.90  E-value=5.2e-07  Score=78.27  Aligned_cols=226  Identities=14%  Similarity=0.144  Sum_probs=138.0

Q ss_pred             eEEEEccCCCEEEEeeCCCCeEEEeCCCCcEEEEecCCCCceEEEEECCCCC--eEEE-----eeCCCcEEEEECCCCeE
Q 021399           14 TYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSM--TLIT-----GSADQTAKLWNVETGAQ   86 (313)
Q Consensus        14 ~~~~fs~~g~~l~s~s~d~~i~iw~~~~~~~~~~~~~H~~~V~~~~~~~~~~--~l~s-----~s~D~~v~vWd~~~~~~   86 (313)
                      ++..|++|..+ +.--..+.+.+|+....+.+ .-+-|...|..+.++|.++  .+++     .|.=..||||.+.....
T Consensus       129 W~~qfs~dEsl-~arlv~nev~f~~~~~f~~~-~~kl~~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~~~  206 (566)
T KOG2315|consen  129 WVPQFSIDESL-AARLVSNEVQFYDLGSFKTI-QHKLSVSGITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEEGQ  206 (566)
T ss_pred             cccccccchhh-hhhhhcceEEEEecCCccce-eeeeeccceeeEEecCCCCCceEEEEccCCCCCCcEEEEeccccccc
Confidence            57888887543 33334568899987763321 2223577888889998643  3333     45567799998763322


Q ss_pred             EEEe----cCCCCeeEEEeecCC-eEEEEE-CC--Cce-eccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEccC
Q 021399           87 LFTF----NFDSPARSVDFAVGD-KLAVIT-TD--PFM-ELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPL  157 (313)
Q Consensus        87 ~~~~----~~~~~~~~~~~~~~~-~~~~~~-~~--~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~  157 (313)
                      -...    .+..+-..+.|...+ .++++. ++  +.. ...+.-.++.+...     +..+.+--...++|+++.|+|+
T Consensus       207 ~~~~a~ksFFkadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~-----g~s~~V~L~k~GPVhdv~W~~s  281 (566)
T KOG2315|consen  207 HQPVANKSFFKADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQ-----GESVSVPLLKEGPVHDVTWSPS  281 (566)
T ss_pred             cchhhhccccccceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEec-----CceEEEecCCCCCceEEEECCC
Confidence            1111    123334445555533 333332 21  111 11111122222211     2233333334789999999999


Q ss_pred             CCEEEEee--CCCeEEEEECCCCceeeecccccCceeceEEEEECCCCCEEEEeeCC---CcEEEEECCCCcEEEEEecC
Q 021399          158 NRTIISAG--EDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLD---KSAKLWDARTLELIKTYVTE  232 (313)
Q Consensus       158 ~~~i~t~~--~d~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d---g~i~iwd~~~~~~~~~~~~~  232 (313)
                      ++.|+.+-  -=-++.++|++- .++..+     -.+.=+++.|+|.|++|+.++.+   |.+-+||+.+.+++..+...
T Consensus       282 ~~EF~VvyGfMPAkvtifnlr~-~~v~df-----~egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~K~i~~~~a~  355 (566)
T KOG2315|consen  282 GREFAVVYGFMPAKVTIFNLRG-KPVFDF-----PEGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPNRKLIAKFKAA  355 (566)
T ss_pred             CCEEEEEEecccceEEEEcCCC-CEeEeC-----CCCCccceEECCCCCEEEEeecCCCCCceEEEeccchhhccccccC
Confidence            98887764  234688999863 444333     24556788999999999998875   78999999998888776543


Q ss_pred             CceeEEEeccCCCEEEEcccc
Q 021399          233 RPVNAVTMSPLLDHVVLGGGQ  253 (313)
Q Consensus       233 ~~~~~~~~~p~~~~~~~~~~~  253 (313)
                       ...-.+|+|+|.+++++...
T Consensus       356 -~tt~~eW~PdGe~flTATTa  375 (566)
T KOG2315|consen  356 -NTTVFEWSPDGEYFLTATTA  375 (566)
T ss_pred             -CceEEEEcCCCcEEEEEecc
Confidence             24557899999999987543

>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]

Probab=98.89  E-value=7e-08  Score=78.84  Aligned_cols=200  Identities=20%  Similarity=0.316  Sum_probs=136.4

Q ss_pred             cceeEEEEccCCCEEEEeeCCCCeEEEeCC----CCcEEEEecCCCCceEEEEECCCCCeEEEeeCCCcEEEEECCCCeE
Q 021399           11 RPLTYLKYNKDGDLLFSCAKDHTPTVWFAD----NGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQ   86 (313)
Q Consensus        11 ~~v~~~~fs~~g~~l~s~s~d~~i~iw~~~----~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~v~vWd~~~~~~   86 (313)
                      .++.++.|.++...|+.|-..|++.-+.+.    ....++....|...|..+-|+...+.+++.+.|..+.-=-.+.+..
T Consensus        69 ~~~~~~~y~~e~~~L~vg~~ngtvtefs~sedfnkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~~  148 (404)
T KOG1409|consen   69 SPCSAMEYVSESRRLYVGQDNGTVTEFALSEDFNKMTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGNR  148 (404)
T ss_pred             CCceEeeeeccceEEEEEEecceEEEEEhhhhhhhcchhhhhhhhhcceeeEEecCCceeEEEeccccceEEEeeccCCc
Confidence            357889999999999999999999988544    3445666778999999999998888999999998774333333333


Q ss_pred             EEEecCCCCeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEccCCCEEEEeeC
Q 021399           87 LFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGE  166 (313)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~t~~~  166 (313)
                      +-.+.+..+.....+..+   .....+....    +...++.    .....++..+.+|.+.+.+..|.|....+.+|..
T Consensus       149 lg~Y~~~~~~t~~~~d~~---~~fvGd~~gq----vt~lr~~----~~~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~  217 (404)
T KOG1409|consen  149 LGGYNFETPASALQFDAL---YAFVGDHSGQ----ITMLKLE----QNGCQLITTFNGHTGEVTCLKWDPGQRLLFSGAS  217 (404)
T ss_pred             ccceEeeccCCCCceeeE---EEEecccccc----eEEEEEe----ecCCceEEEEcCcccceEEEEEcCCCcEEEeccc
Confidence            221111111100000000   1111111110    1111111    1223467788899999999999999999999999


Q ss_pred             CCeEEEEECCCCceeeecccccCceeceEEEEECCCCCEEEEeeCCCcEEEEECCCC
Q 021399          167 DAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTL  223 (313)
Q Consensus       167 d~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~dg~i~iwd~~~~  223 (313)
                      |..+-+||+--++-...  ...+|...|.++...+-...++|++.||.|-+||++..
T Consensus       218 d~~vi~wdigg~~g~~~--el~gh~~kV~~l~~~~~t~~l~S~~edg~i~~w~mn~~  272 (404)
T KOG1409|consen  218 DHSVIMWDIGGRKGTAY--ELQGHNDKVQALSYAQHTRQLISCGEDGGIVVWNMNVK  272 (404)
T ss_pred             cCceEEEeccCCcceee--eeccchhhhhhhhhhhhheeeeeccCCCeEEEEeccce
Confidence            99999999864443221  22478999999998888889999999999999998643

>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal

Probab=98.88  E-value=2.3e-06  Score=68.73  Aligned_cols=210  Identities=17%  Similarity=0.224  Sum_probs=121.4

Q ss_pred             EEEccCCCEEEEeeCCCCeEEEeCCCC--cEEEEecCCC---CceEEEEECCCCCeEEEeeCCCcEEEEECCCCeEEEEe
Q 021399           16 LKYNKDGDLLFSCAKDHTPTVWFADNG--ERLGTYRGHN---GAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTF   90 (313)
Q Consensus        16 ~~fs~~g~~l~s~s~d~~i~iw~~~~~--~~~~~~~~H~---~~V~~~~~~~~~~~l~s~s~D~~v~vWd~~~~~~~~~~   90 (313)
                      ++.+.+|+.||. -.|..|.|-..++.  ..++...-.+   .+=..++||||+.+||-+.+.|+|+++|+...+ ++.+
T Consensus         3 ~~~~~~Gk~lAi-~qd~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~g~~-lf~I   80 (282)
T PF15492_consen    3 LALSSDGKLLAI-LQDQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSPDCTLLAYAESTGTIRVFDLMGSE-LFVI   80 (282)
T ss_pred             eeecCCCcEEEE-EeccEEEEEeccCCchheeEEEecCCCCCchheEEEECCCCcEEEEEcCCCeEEEEecccce-eEEc
Confidence            556788988884 56777787766554  2223332222   234568999999999999999999999997643 3332


Q ss_pred             cC--------CCCeeEEEeecCC-------eEEEEECCCceeccccceeeeeeeCC-CCCCCceEEEecC-CCCceEEEE
Q 021399           91 NF--------DSPARSVDFAVGD-------KLAVITTDPFMELNSAIHVKRIARDP-ADQGGESVLILKG-PQGRINRAV  153 (313)
Q Consensus        91 ~~--------~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~~~i~~~~  153 (313)
                      ..        ...+..+.|.+..       .++++.-      .+.++...+.... ..........+.. +...|+.+.
T Consensus        81 ~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y------~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~v  154 (282)
T PF15492_consen   81 PPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINY------RGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAV  154 (282)
T ss_pred             CcccccCCccccceeeeEeeccccccccceeEEEEec------cceeeeEEEEcccCCcceeeEEEEecccCCCceeEEE
Confidence            21        1223333333211       1111110      1111111111100 0011112223333 356789999


Q ss_pred             EccCCCEEEEeeCC----C-------eEEEEECCCCceeee--------------------ccc------ccCceeceEE
Q 021399          154 WGPLNRTIISAGED----A-------IVRIWDTETGKLLKE--------------------SDK------ETGHKKTITS  196 (313)
Q Consensus       154 ~~~~~~~i~t~~~d----~-------~i~lwd~~~~~~~~~--------------------~~~------~~~h~~~v~~  196 (313)
                      ++|..+.++.||..    +       -+..|.+-++.+.-.                    +..      .......|..
T Consensus       155 y~p~h~LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~~Pyyk~v~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~~d~i~k  234 (282)
T PF15492_consen  155 YHPKHRLLLVGGCEQNQDGMSKASSCGLTAWRILSDSPYYKQVTSSEDDITASSKRRGLLRIPSFKFFSRQGQEQDGIFK  234 (282)
T ss_pred             EcCCCCEEEEeccCCCCCccccccccCceEEEEcCCCCcEEEccccCccccccccccceeeccceeeeeccccCCCceEE
Confidence            99998888877631    1       255665433322111                    000      0113467888


Q ss_pred             EEECCCCCEEEEeeCCCcEEEEECCCCcEEEEEecCC
Q 021399          197 LAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTER  233 (313)
Q Consensus       197 ~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~  233 (313)
                      +..||||..||+...+|.|.+|++.+..+.+.+..++
T Consensus       235 mSlSPdg~~La~ih~sG~lsLW~iPsL~~~~~W~~~e  271 (282)
T PF15492_consen  235 MSLSPDGSLLACIHFSGSLSLWEIPSLRLQRSWKQDE  271 (282)
T ss_pred             EEECCCCCEEEEEEcCCeEEEEecCcchhhcccchhh
Confidence            9999999999999999999999999988888776543

>PRK04043 tolB translocation protein TolB; Provisional

Probab=98.88  E-value=2.1e-06  Score=75.81  Aligned_cols=144  Identities=10%  Similarity=0.033  Sum_probs=80.8

Q ss_pred             EEEccCCCEEEEe-e--CCCeEEEEECCCCceeeecccccCceeceEEEEECCCCCEEEEeeC-CC--cEEEEECCCCcE
Q 021399          152 AVWGPLNRTIISA-G--EDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSL-DK--SAKLWDARTLEL  225 (313)
Q Consensus       152 ~~~~~~~~~i~t~-~--~d~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~-dg--~i~iwd~~~~~~  225 (313)
                      ..|+|+|+.++.. +  .+..|.++|+..+.. +.+..   +........|+|||+.|+-.+. .+  .|.+.|+++++.
T Consensus       238 ~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g~~-~~LT~---~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~  313 (419)
T PRK04043        238 SDVSKDGSKLLLTMAPKGQPDIYLYDTNTKTL-TQITN---YPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSV  313 (419)
T ss_pred             eEECCCCCEEEEEEccCCCcEEEEEECCCCcE-EEccc---CCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCe
Confidence            4577877766533 2  245688889877653 33322   2222334579999998776653 23  578889988776


Q ss_pred             EEEEecCCceeEEEeccCCCEEEEcccccCceeEeeccCCCceeeeeeehhhhhhhccccccccceeEEEECCCCCeeEE
Q 021399          226 IKTYVTERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKRYGF  305 (313)
Q Consensus       226 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~fspdgk~~~~  305 (313)
                      .+...... . ...|+|+++.++.........     ...+.+.+.+.|..++.. ..+.. .+......|+|||+.++|
T Consensus       314 ~rlt~~g~-~-~~~~SPDG~~Ia~~~~~~~~~-----~~~~~~~I~v~d~~~g~~-~~LT~-~~~~~~p~~SPDG~~I~f  384 (419)
T PRK04043        314 EQVVFHGK-N-NSSVSTYKNYIVYSSRETNNE-----FGKNTFNLYLISTNSDYI-RRLTA-NGVNQFPRFSSDGGSIMF  384 (419)
T ss_pred             EeCccCCC-c-CceECCCCCEEEEEEcCCCcc-----cCCCCcEEEEEECCCCCe-EECCC-CCCcCCeEECCCCCEEEE
Confidence            44332221 2 248999999988765432110     000112333444332221 11211 122335789999999998


Q ss_pred             EEE
Q 021399          306 LLL  308 (313)
Q Consensus       306 ~~~  308 (313)
                      ..-
T Consensus       385 ~~~  387 (419)
T PRK04043        385 IKY  387 (419)
T ss_pred             EEc
Confidence            753

>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation []

Probab=98.87  E-value=5.8e-06  Score=79.65  Aligned_cols=224  Identities=16%  Similarity=0.165  Sum_probs=129.2

Q ss_pred             ccceeEEEEccCCCEEEEeeCCCCeEEE----eCCCCc--EEEEecCCCCceEEEEECCCCCeEEEeeCCCcEEEEECCC
Q 021399           10 ERPLTYLKYNKDGDLLFSCAKDHTPTVW----FADNGE--RLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVET   83 (313)
Q Consensus        10 ~~~v~~~~fs~~g~~l~s~s~d~~i~iw----~~~~~~--~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~v~vWd~~~   83 (313)
                      .+.|.++.|-++...|+.+..+|.|.+.    +..+..  .+..+   +..|.+++||||+++++-...++++.+-+ .+
T Consensus        75 ~~~ivs~~yl~d~~~l~~~~~~Gdi~~~~~~~~~~~~~~E~VG~v---d~GI~a~~WSPD~Ella~vT~~~~l~~mt-~~  150 (928)
T PF04762_consen   75 NDKIVSFQYLADSESLCIALASGDIILVREDPDPDEDEIEIVGSV---DSGILAASWSPDEELLALVTGEGNLLLMT-RD  150 (928)
T ss_pred             CCcEEEEEeccCCCcEEEEECCceEEEEEccCCCCCceeEEEEEE---cCcEEEEEECCCcCEEEEEeCCCEEEEEe-cc
Confidence            4568889999999999999999999999    444332  33333   56899999999999999888888887764 21


Q ss_pred             CeEEEEec----------------------C---------------------------CCCeeEEEeecCCeEEEEECCC
Q 021399           84 GAQLFTFN----------------------F---------------------------DSPARSVDFAVGDKLAVITTDP  114 (313)
Q Consensus        84 ~~~~~~~~----------------------~---------------------------~~~~~~~~~~~~~~~~~~~~~~  114 (313)
                      .+.+....                      +                           +.....++|..++++.+++.-.
T Consensus       151 fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s~dd~~~~ISWRGDG~yFAVss~~  230 (928)
T PF04762_consen  151 FDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLSWDDGRVRISWRGDGEYFAVSSVE  230 (928)
T ss_pred             ceEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccccCCCceEEEECCCCcEEEEEEEE
Confidence            22111100                      0                           0012233344444433332110


Q ss_pred             ceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEccCCCEEEEeeC---CCeEEEEECCCCceeeecccc-cCc
Q 021399          115 FMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGE---DAIVRIWDTETGKLLKESDKE-TGH  190 (313)
Q Consensus       115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~t~~~---d~~i~lwd~~~~~~~~~~~~~-~~h  190 (313)
                      .  ..+..+.-++..    ..+......+.-.+--..++|.|.|+.||+...   ...|..|+.+ |-.-.++... ...
T Consensus       231 ~--~~~~~R~iRVy~----ReG~L~stSE~v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfErN-GLrhgeF~l~~~~~  303 (928)
T PF04762_consen  231 P--ETGSRRVIRVYS----REGELQSTSEPVDGLEGALSWRPSGNLIASSQRLPDRHDVVFFERN-GLRHGEFTLRFDPE  303 (928)
T ss_pred             c--CCCceeEEEEEC----CCceEEeccccCCCccCCccCCCCCCEEEEEEEcCCCcEEEEEecC-CcEeeeEecCCCCC
Confidence            0  000011111110    112222222211222346889999999998764   4557777743 3222233221 134


Q ss_pred             eeceEEEEECCCCCEEEEeeCCCcEEEEECCCCc--EEEEEe--cCCceeEEEeccCCC
Q 021399          191 KKTITSLAKAADGSHFLTGSLDKSAKLWDARTLE--LIKTYV--TERPVNAVTMSPLLD  245 (313)
Q Consensus       191 ~~~v~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~--~~~~~~--~~~~~~~~~~~p~~~  245 (313)
                      ...|..++|++|+..||....|. |.+|-.....  +.+++.  ....+..+.|+|...
T Consensus       304 ~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~NYHWYLKqei~~~~~~~~~~~~Wdpe~p  361 (928)
T PF04762_consen  304 EEKVIELAWNSDSEILAVWLEDR-VQLWTRSNYHWYLKQEIRFSSSESVNFVKWDPEKP  361 (928)
T ss_pred             CceeeEEEECCCCCEEEEEecCC-ceEEEeeCCEEEEEEEEEccCCCCCCceEECCCCC
Confidence            56789999999999999877665 9999876632  233333  233455688888644

>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]

Probab=98.86  E-value=3.9e-09  Score=85.94  Aligned_cols=80  Identities=28%  Similarity=0.457  Sum_probs=71.2

Q ss_pred             cccccccceeEEEEccCCCEEEEeeCCCCeEEEeCCCCc-EEEEecCCCCceEEEEECCCCCeEEEeeCCCcEEEEECCC
Q 021399            5 LMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGE-RLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVET   83 (313)
Q Consensus         5 ~l~~h~~~v~~~~fs~~g~~l~s~s~d~~i~iw~~~~~~-~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~v~vWd~~~   83 (313)
                      ++.+|.+.+.+++|.+....|+||..|..+.+||+.-.+ ....+.+|.+.|..+..-+--+.+.|++.||.|.+|+.+-
T Consensus       192 ~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~~~el~gh~~kV~~l~~~~~t~~l~S~~edg~i~~w~mn~  271 (404)
T KOG1409|consen  192 TFNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRKGTAYELQGHNDKVQALSYAQHTRQLISCGEDGGIVVWNMNV  271 (404)
T ss_pred             EEcCcccceEEEEEcCCCcEEEeccccCceEEEeccCCcceeeeeccchhhhhhhhhhhhheeeeeccCCCeEEEEeccc
Confidence            688999999999999999999999999999999987554 4567889999999988877778899999999999999864


Q ss_pred             C
Q 021399           84 G   84 (313)
Q Consensus        84 ~   84 (313)
                      .
T Consensus       272 ~  272 (404)
T KOG1409|consen  272 K  272 (404)
T ss_pred             e
Confidence            3

>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=98.85  E-value=5.6e-09  Score=59.24  Aligned_cols=35  Identities=29%  Similarity=0.539  Sum_probs=33.4

Q ss_pred             ccccccccceeEEEEccCCCEEEEeeCCCCeEEEe
Q 021399            4 ILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWF   38 (313)
Q Consensus         4 ~~l~~h~~~v~~~~fs~~g~~l~s~s~d~~i~iw~   38 (313)
                      .++++|.++|++++|+|++.+|++++.|+.|++||
T Consensus         5 ~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd   39 (39)
T PF00400_consen    5 RTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD   39 (39)
T ss_dssp             EEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred             EEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence            37899999999999999999999999999999997

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....

>KOG2695 consensus WD40 repeat protein [General function prediction only]

Probab=98.83  E-value=1.4e-08  Score=82.94  Aligned_cols=142  Identities=18%  Similarity=0.223  Sum_probs=97.3

Q ss_pred             ccceeEEEEccCCCEEEEeeCCCCeEEEeCCCCcE----EEEecCCCCceEEEEECC-CCCeEEEeeCCCcEEEEECCCC
Q 021399           10 ERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGER----LGTYRGHNGAVWCCDVSR-DSMTLITGSADQTAKLWNVETG   84 (313)
Q Consensus        10 ~~~v~~~~fs~~g~~l~s~s~d~~i~iw~~~~~~~----~~~~~~H~~~V~~~~~~~-~~~~l~s~s~D~~v~vWd~~~~   84 (313)
                      +..|.++.|...++.++.|...|.|-..|+....+    ...---|..+|+++..-. +++.|++.+.+|+|++||.+--
T Consensus       252 ksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rlyh~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~  331 (425)
T KOG2695|consen  252 KSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRLYHDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRAT  331 (425)
T ss_pred             chhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEEEEcCcchhhhhhhccccceEeeccCcCceeEeeehhh
Confidence            44577889998899999999999999999886521    112224888999987554 6789999999999999998643


Q ss_pred             eEEEEecCCCCeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEE--EEEccCCCEEE
Q 021399           85 AQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINR--AVWGPLNRTII  162 (313)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~--~~~~~~~~~i~  162 (313)
                      ++.                                                 ..++..+||-+.-..  +-..+....++
T Consensus       332 K~~-------------------------------------------------~~V~qYeGHvN~~a~l~~~v~~eeg~I~  362 (425)
T KOG2695|consen  332 KCK-------------------------------------------------KSVMQYEGHVNLSAYLPAHVKEEEGSIF  362 (425)
T ss_pred             hcc-------------------------------------------------cceeeeecccccccccccccccccceEE
Confidence            321                                                 112233333322211  22345667889


Q ss_pred             EeeCCCeEEEEECCCCceeeeccccc-CceeceEEEEEC
Q 021399          163 SAGEDAIVRIWDTETGKLLKESDKET-GHKKTITSLAKA  200 (313)
Q Consensus       163 t~~~d~~i~lwd~~~~~~~~~~~~~~-~h~~~v~~~~~s  200 (313)
                      ++|+|...|+|.++++.++++..... .-+..+.++++.
T Consensus       363 s~GdDcytRiWsl~~ghLl~tipf~~s~~e~d~~sv~~~  401 (425)
T KOG2695|consen  363 SVGDDCYTRIWSLDSGHLLCTIPFPYSASEVDIPSVAFD  401 (425)
T ss_pred             EccCeeEEEEEecccCceeeccCCCCccccccccceehh
Confidence            99999999999999999988764321 122345555553

>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]

Probab=98.81  E-value=3.9e-06  Score=72.98  Aligned_cols=262  Identities=16%  Similarity=0.211  Sum_probs=153.3

Q ss_pred             eEEEEccCCCEEEEeeCCCCeEEEeCCCCcEEEEecCCCCceEEEEECCCCCeEEEeeCC-----------CcEEEEECC
Q 021399           14 TYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSAD-----------QTAKLWNVE   82 (313)
Q Consensus        14 ~~~~fs~~g~~l~s~s~d~~i~iw~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D-----------~~v~vWd~~   82 (313)
                      +-++|||.|.+|+|--.-|. .+|-.++-..++.|- | ..|.-+.|||+.++|+|-|..           ..++|||+.
T Consensus       214 tyv~wSP~GTYL~t~Hk~GI-~lWGG~~f~r~~RF~-H-p~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~  290 (698)
T KOG2314|consen  214 TYVRWSPKGTYLVTFHKQGI-ALWGGESFDRIQRFY-H-PGVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIA  290 (698)
T ss_pred             eeEEecCCceEEEEEeccce-eeecCccHHHHHhcc-C-CCceeeecCCccceEEEecCCccccCcccCCCceEEEEEcc
Confidence            35899999999999887664 789766555544442 3 458889999999999996632           578999999


Q ss_pred             CCeEEEEecC--CC--CeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecC---CCCceEEEEEc
Q 021399           83 TGAQLFTFNF--DS--PARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKG---PQGRINRAVWG  155 (313)
Q Consensus        83 ~~~~~~~~~~--~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~i~~~~~~  155 (313)
                      +|.....+..  ..  .-..+.|+.+++.++-.....+.+.....               .+.+..   .-..|....|+
T Consensus       291 tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~~sisIyEtps---------------f~lld~Kslki~gIr~Fsws  355 (698)
T KOG2314|consen  291 TGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTGNSISIYETPS---------------FMLLDKKSLKISGIRDFSWS  355 (698)
T ss_pred             ccchhcceeccCCCccccceEEeccCCceeEEeccceEEEEecCc---------------eeeecccccCCccccCcccC
Confidence            9987765543  11  12345677788877665443222211110               001111   12456777888


Q ss_pred             cCCCEEEEeeC-----CCeEEEEECCCCceeeecccccCceeceEEEEECCCCCEEEEee----------CCCcEEEEEC
Q 021399          156 PLNRTIISAGE-----DAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGS----------LDKSAKLWDA  220 (313)
Q Consensus       156 ~~~~~i~t~~~-----d~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s----------~dg~i~iwd~  220 (313)
                      |.++.||-=..     -.++.|-.+.+++.++...   -|+-.-..+-|..+|++|..--          .=..+-|+.+
T Consensus       356 P~~~llAYwtpe~~~~parvtL~evPs~~~iRt~n---lfnVsDckLhWQk~gdyLcvkvdR~tK~~~~g~f~n~eIfri  432 (698)
T KOG2314|consen  356 PTSNLLAYWTPETNNIPARVTLMEVPSKREIRTKN---LFNVSDCKLHWQKSGDYLCVKVDRHTKSKVKGQFSNLEIFRI  432 (698)
T ss_pred             CCcceEEEEcccccCCcceEEEEecCccceeeecc---ceeeeccEEEeccCCcEEEEEEEeeccccccceEeeEEEEEe
Confidence            98776663211     1245666666666665443   2333334566778888765321          1112345554


Q ss_pred             CCC-cEEEEEecCCceeEEEeccCCCEEEEcccccCceeEeeccCCCceeeeeeehh----hhhhhccccccccceeEEE
Q 021399          221 RTL-ELIKTYVTERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKI----LQEEIGGVKGHFGPINALA  295 (313)
Q Consensus       221 ~~~-~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~h~~~V~~~~  295 (313)
                      +.. -++........+...+|-|.|+-.++-.|.+..           ..++++..+    ..+.+..+.  ...-+.+.
T Consensus       433 reKdIpve~velke~vi~FaWEP~gdkF~vi~g~~~k-----------~tvsfY~~e~~~~~~~lVk~~d--k~~~N~vf  499 (698)
T KOG2314|consen  433 REKDIPVEVVELKESVIAFAWEPHGDKFAVISGNTVK-----------NTVSFYAVETNIKKPSLVKELD--KKFANTVF  499 (698)
T ss_pred             eccCCCceeeecchheeeeeeccCCCeEEEEEccccc-----------cceeEEEeecCCCchhhhhhhc--ccccceEE
Confidence            432 233333345567888999999977665444321           122333222    112222222  23457789


Q ss_pred             ECCCCCeeEEEEEE
Q 021399          296 FNPDGKRYGFLLLQ  309 (313)
Q Consensus       296 fspdgk~~~~~~~~  309 (313)
                      |+|-|+-++..++-
T Consensus       500 wsPkG~fvvva~l~  513 (698)
T KOG2314|consen  500 WSPKGRFVVVAALV  513 (698)
T ss_pred             EcCCCcEEEEEEec
Confidence            99999988776653

>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]

Probab=98.79  E-value=4.4e-07  Score=72.73  Aligned_cols=109  Identities=17%  Similarity=0.197  Sum_probs=77.5

Q ss_pred             EecCCCCceEEEEEccCC-CEEEEeeCCCeEEEEECCCCceeeecccccCceeceEEEEECC-CCCEEEEeeCCCcEEEE
Q 021399          141 ILKGPQGRINRAVWGPLN-RTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAA-DGSHFLTGSLDKSAKLW  218 (313)
Q Consensus       141 ~~~~~~~~i~~~~~~~~~-~~i~t~~~d~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~-~~~~l~s~s~dg~i~iw  218 (313)
                      .++.|.-++..+.|+... +.+.+||+|+.+..||++..+... .....-|...|.++.-+| ++.+|++|+.|..|++|
T Consensus       160 ~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i-~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~  238 (339)
T KOG0280|consen  160 TWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFI-WHNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVL  238 (339)
T ss_pred             cccccceeeeeeecccCCCceEEecCCCceEEEEEecCCccee-eecceeeecceEEEecCCCCCceEEEeccccceeee
Confidence            445666666666665433 577899999999999998433211 111234778888886654 57799999999999999


Q ss_pred             ECC-CCcEEEEEecCCceeEEEeccCCCEEEEc
Q 021399          219 DAR-TLELIKTYVTERPVNAVTMSPLLDHVVLG  250 (313)
Q Consensus       219 d~~-~~~~~~~~~~~~~~~~~~~~p~~~~~~~~  250 (313)
                      |.| .++++..-...+.+=.+.++|...+.+.+
T Consensus       239 DtRnm~kPl~~~~v~GGVWRi~~~p~~~~~lL~  271 (339)
T KOG0280|consen  239 DTRNMGKPLFKAKVGGGVWRIKHHPEIFHRLLA  271 (339)
T ss_pred             ehhcccCccccCccccceEEEEecchhhhHHHH
Confidence            999 47887765555667778888876554443

>KOG4190 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.78  E-value=3.2e-08  Score=85.64  Aligned_cols=173  Identities=21%  Similarity=0.340  Sum_probs=113.6

Q ss_pred             EEEecCCCCceEEEEECCCCCeEEEeeCCCcEEEEECCCC-eEEEEecCCCCeeEEEeecCCeEEEEECCCceeccccce
Q 021399           45 LGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETG-AQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIH  123 (313)
Q Consensus        45 ~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~v~vWd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  123 (313)
                      +..+.||+..|.+++--.+.+-|++++.|++||+|+++.. ..+.+                                  
T Consensus       728 L~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~t----------------------------------  773 (1034)
T KOG4190|consen  728 LCNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGT----------------------------------  773 (1034)
T ss_pred             eecccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCcccc----------------------------------
Confidence            3467799999988876556678999999999999998632 11000                                  


Q ss_pred             eeeeeeCCCCCCCceEEEecCCCCceEEEEEccCCCEEEEeeCCCeEEEEECCCCceeeecccccCce--eceEEEEECC
Q 021399          124 VKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHK--KTITSLAKAA  201 (313)
Q Consensus       124 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~t~~~d~~i~lwd~~~~~~~~~~~~~~~h~--~~v~~~~~s~  201 (313)
                                  .........|..+|+++-|-.+-+++++  -|+.|++||..-++++........|.  ..|.++- +.
T Consensus       774 ------------saCQfTY~aHkk~i~~igfL~~lr~i~S--cD~giHlWDPFigr~Laq~~dapk~~a~~~ikcl~-nv  838 (1034)
T KOG4190|consen  774 ------------SACQFTYQAHKKPIHDIGFLADLRSIAS--CDGGIHLWDPFIGRLLAQMEDAPKEGAGGNIKCLE-NV  838 (1034)
T ss_pred             ------------ceeeeEhhhccCcccceeeeeccceeee--ccCcceeecccccchhHhhhcCcccCCCceeEecc-cC
Confidence                        0011123456677777777766666664  46889999998877766444333332  3344442 22


Q ss_pred             CCCEEEEe-eCCCcEEEEECCCCcEEEEEec------CCceeEEEeccCCCEEEEcccccCceeEeeccCCCce
Q 021399          202 DGSHFLTG-SLDKSAKLWDARTLELIKTYVT------ERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKF  268 (313)
Q Consensus       202 ~~~~l~s~-s~dg~i~iwd~~~~~~~~~~~~------~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~  268 (313)
                      +...++.| +...+++++|.+..+-..++..      ....++++..|.|+.++++-+  .+.+...|.|.|+.
T Consensus       839 ~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~iaVa~~GN~lAa~LS--nGci~~LDaR~G~v  910 (1034)
T KOG4190|consen  839 DRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAIAVADKGNKLAAALS--NGCIAILDARNGKV  910 (1034)
T ss_pred             cchheeeeccchhhheeeecccccceeeEEeccCCCCchheeEEEeccCcchhhHHhc--CCcEEEEecCCCce
Confidence            44444444 6789999999999877666642      134788999999887766543  33466778777653

>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]

Probab=98.77  E-value=3.4e-07  Score=73.35  Aligned_cols=154  Identities=17%  Similarity=0.208  Sum_probs=105.6

Q ss_pred             eEEEEccCCCEEEEeeCCCCeEEEeCCCCcEEE--EecCCCCceEEEEECCC-CCeEEEeeCCCcEEEEECCCCeEEEEe
Q 021399           14 TYLKYNKDGDLLFSCAKDHTPTVWFADNGERLG--TYRGHNGAVWCCDVSRD-SMTLITGSADQTAKLWNVETGAQLFTF   90 (313)
Q Consensus        14 ~~~~fs~~g~~l~s~s~d~~i~iw~~~~~~~~~--~~~~H~~~V~~~~~~~~-~~~l~s~s~D~~v~vWd~~~~~~~~~~   90 (313)
                      .++.|++.+..++++-.+|.+.+-+.......+  +.+.|+-+.|-..|+.. .++++|||.|+.+.-||++..+ .+.+
T Consensus       125 lslD~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~-~~i~  203 (339)
T KOG0280|consen  125 LSLDISTSGTKIFVSDSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPK-TFIW  203 (339)
T ss_pred             eEEEeeccCceEEEEcCCCcEEEEecceeeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCc-ceee
Confidence            467889999999999999999966655555544  78999999999999753 4699999999999999988432 1111


Q ss_pred             cCCCCeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEc-cCCCEEEEeeCCCe
Q 021399           91 NFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWG-PLNRTIISAGEDAI  169 (313)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~i~t~~~d~~  169 (313)
                      .. .                                                +-|...|.++.-+ |.+.+|+||+.|..
T Consensus       204 ~n-~------------------------------------------------kvH~~GV~SI~ss~~~~~~I~TGsYDe~  234 (339)
T KOG0280|consen  204 HN-S------------------------------------------------KVHTSGVVSIYSSPPKPTYIATGSYDEC  234 (339)
T ss_pred             ec-c------------------------------------------------eeeecceEEEecCCCCCceEEEeccccc
Confidence            00 0                                                0122334344333 34568999999999


Q ss_pred             EEEEECCC-CceeeecccccCceeceEEEEECCCCC--EEEEeeCCCcEEEEECCC
Q 021399          170 VRIWDTET-GKLLKESDKETGHKKTITSLAKAADGS--HFLTGSLDKSAKLWDART  222 (313)
Q Consensus       170 i~lwd~~~-~~~~~~~~~~~~h~~~v~~~~~s~~~~--~l~s~s~dg~i~iwd~~~  222 (313)
                      |++||.++ ++++..-    .-.+.|+.+..+|.-.  .++++-..| .+|-+...
T Consensus       235 i~~~DtRnm~kPl~~~----~v~GGVWRi~~~p~~~~~lL~~CMh~G-~ki~~~~~  285 (339)
T KOG0280|consen  235 IRVLDTRNMGKPLFKA----KVGGGVWRIKHHPEIFHRLLAACMHNG-AKILDSSD  285 (339)
T ss_pred             eeeeehhcccCccccC----ccccceEEEEecchhhhHHHHHHHhcC-ceEEEecc
Confidence            99999874 4444322    2457899999988643  244444444 46666544

>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]

Probab=98.77  E-value=5.3e-08  Score=94.55  Aligned_cols=190  Identities=16%  Similarity=0.184  Sum_probs=126.5

Q ss_pred             CCEEEEeeCCCCeEEEeCCCCcEEEEecCCCCceEEEEECCCCCeEEEeeCCCcEEEEECCCCeEEEEecCCC--CeeEE
Q 021399           22 GDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFNFDS--PARSV   99 (313)
Q Consensus        22 g~~l~s~s~d~~i~iw~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~v~vWd~~~~~~~~~~~~~~--~~~~~   99 (313)
                      ++.+.....++...-|..+-+..  .++-|-..|.++.-+|...+.+||++||.|++|.-..++.+..+....  .+...
T Consensus      2180 s~~~~~~n~~~~~~tq~~~~~~~--~~k~~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~ 2257 (2439)
T KOG1064|consen 2180 SNRFTPSNLPWLGSTQTSRGASV--MIKHPVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRS 2257 (2439)
T ss_pred             cccCCcccCCccccceeccccee--EeecccCceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeeccCcchhhhh
Confidence            34444444555555554332222  234455678888888888899999999999999988888777665432  33333


Q ss_pred             Eee-cCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEccCCCEEEEee---CCCeEEEEEC
Q 021399          100 DFA-VGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAG---EDAIVRIWDT  175 (313)
Q Consensus       100 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~t~~---~d~~i~lwd~  175 (313)
                      .|+ .|+++.++..++....+.      .       +.++....+.|.....+..|-.  ..+++++   +++.+.+||.
T Consensus      2258 ~f~~qGnk~~i~d~dg~l~l~q------~-------~pk~~~s~qchnk~~~Df~Fi~--s~~~tag~s~d~~n~~lwDt 2322 (2439)
T KOG1064|consen 2258 RFNHQGNKFGIVDGDGDLSLWQ------A-------SPKPYTSWQCHNKALSDFRFIG--SLLATAGRSSDNRNVCLWDT 2322 (2439)
T ss_pred             hhcccCCceeeeccCCceeecc------c-------CCcceeccccCCccccceeeee--hhhhccccCCCCCcccchhc
Confidence            444 366776665554332221      1       2345566677777777766654  3456654   5678999997


Q ss_pred             CCCceeeecccccCceeceEEEEECCCCCEEEEeeCCCcEEEEECCCCcEEEEEe
Q 021399          176 ETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYV  230 (313)
Q Consensus       176 ~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~  230 (313)
                      .......-+  +..|.+.++++++.|....|+||+.+|.|.+||++.-+++..++
T Consensus      2323 l~~~~~s~v--~~~H~~gaT~l~~~P~~qllisggr~G~v~l~D~rqrql~h~~~ 2375 (2439)
T KOG1064|consen 2323 LLPPMNSLV--HTCHDGGATVLAYAPKHQLLISGGRKGEVCLFDIRQRQLRHTFQ 2375 (2439)
T ss_pred             ccCccccee--eeecCCCceEEEEcCcceEEEecCCcCcEEEeehHHHHHHHHhh
Confidence            543332222  25799999999999999999999999999999998766655543

>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]

Probab=98.76  E-value=3.5e-06  Score=66.91  Aligned_cols=200  Identities=14%  Similarity=0.078  Sum_probs=120.5

Q ss_pred             CCCEEEEeeCCCCeEEEeCCCCc-EEEEecCCCCceEEEEECCC-CCeEEEeeCCCcEEEEECCCCeEEEEecC-CCCee
Q 021399           21 DGDLLFSCAKDHTPTVWFADNGE-RLGTYRGHNGAVWCCDVSRD-SMTLITGSADQTAKLWNVETGAQLFTFNF-DSPAR   97 (313)
Q Consensus        21 ~g~~l~s~s~d~~i~iw~~~~~~-~~~~~~~H~~~V~~~~~~~~-~~~l~s~s~D~~v~vWd~~~~~~~~~~~~-~~~~~   97 (313)
                      +..+|+.|+.-|...+|...+.+ ..+....|...|+-+.=.-+ .-.+.-++.|.++|+.+++.+......-. .....
T Consensus        83 kc~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s~~~~~h~~~~~~n  162 (344)
T KOG4532|consen   83 KCVTLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGDSNKFAVHNQNLTQN  162 (344)
T ss_pred             cccEEEeccccceeeeecccCcccceeeecccccchhhhhhhcccccceeeccCCcceeEEEEecCcccceeecccccee
Confidence            35689999999999999988654 44555666665532211111 22456678999999998875543322211 12356


Q ss_pred             EEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEE--EecCCCCceEEEEEccCCCEEEEeeCCCeEEEEEC
Q 021399           98 SVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVL--ILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDT  175 (313)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~i~~~~~~~~~~~i~t~~~d~~i~lwd~  175 (313)
                      ++.++++.+..+...+.          .++.....+...+...  ........-.+..|+.....+|++..||++.|||+
T Consensus       163 s~~~snd~~~~~~Vgds----------~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~~~FAv~~Qdg~~~I~DV  232 (344)
T KOG4532|consen  163 SLHYSNDPSWGSSVGDS----------RRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSENDLQFAVVFQDGTCAIYDV  232 (344)
T ss_pred             eeEEcCCCceEEEecCC----------CcceEEEeCCccceeeeeEecccCCCceeeeeccCcceEEEEecCCcEEEEEe
Confidence            67777777666554431          0111111111111111  11122223356778888889999999999999999


Q ss_pred             CCCc-eeeecc-cccCceeceEEEEECCCCCE--EEEeeCCCcEEEEECCCCcEEEEEe
Q 021399          176 ETGK-LLKESD-KETGHKKTITSLAKAADGSH--FLTGSLDKSAKLWDARTLELIKTYV  230 (313)
Q Consensus       176 ~~~~-~~~~~~-~~~~h~~~v~~~~~s~~~~~--l~s~s~dg~i~iwd~~~~~~~~~~~  230 (313)
                      +... ++.+.. ....|++.++.+.|++.|..  |.-.=.=+.+.+-|++++.-.+.+.
T Consensus       233 R~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q~I~  291 (344)
T KOG4532|consen  233 RNMATPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNHQVIV  291 (344)
T ss_pred             cccccchhhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCceeeEEe
Confidence            7643 333222 22458999999999986653  2222223578899999987665554

>KOG3914 consensus WD repeat protein WDR4 [Function unknown]

Probab=98.76  E-value=1.7e-08  Score=83.83  Aligned_cols=88  Identities=23%  Similarity=0.332  Sum_probs=74.3

Q ss_pred             CcccccccccceeEEEEccCCCEEEEeeCCCCeEEEeCCCCcEEEEe-cCCCCceEEEEECCCCCeEEEeeCCCcEEEEE
Q 021399            2 RPILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTY-RGHNGAVWCCDVSRDSMTLITGSADQTAKLWN   80 (313)
Q Consensus         2 ~~~~l~~h~~~v~~~~fs~~g~~l~s~s~d~~i~iw~~~~~~~~~~~-~~H~~~V~~~~~~~~~~~l~s~s~D~~v~vWd   80 (313)
                      +++...||-.-++.++++||+++|+++..|..|||-....--.+..| -||+..|..++.-+ ++.|+|+|.|+++++||
T Consensus       143 ~~~~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~-~~~LlS~sGD~tlr~Wd  221 (390)
T KOG3914|consen  143 RCEPILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTD-NYLLLSGSGDKTLRLWD  221 (390)
T ss_pred             CcchhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhccccHhheeeeeecc-CceeeecCCCCcEEEEe
Confidence            45677899999999999999999999999999998776655444444 58999999999875 56799999999999999


Q ss_pred             CCCCeEEEEe
Q 021399           81 VETGAQLFTF   90 (313)
Q Consensus        81 ~~~~~~~~~~   90 (313)
                      ++++++...+
T Consensus       222 ~~sgk~L~t~  231 (390)
T KOG3914|consen  222 ITSGKLLDTC  231 (390)
T ss_pred             cccCCccccc
Confidence            9999876444

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=98.75  E-value=1.9e-06  Score=84.33  Aligned_cols=181  Identities=14%  Similarity=0.161  Sum_probs=112.8

Q ss_pred             eeEEEEcc-CCCEEEEeeCCCCeEEEeCCCCcEEEEecC---------CC------CceEEEEECCCCC-eEEEeeCCCc
Q 021399           13 LTYLKYNK-DGDLLFSCAKDHTPTVWFADNGERLGTYRG---------HN------GAVWCCDVSRDSM-TLITGSADQT   75 (313)
Q Consensus        13 v~~~~fs~-~g~~l~s~s~d~~i~iw~~~~~~~~~~~~~---------H~------~~V~~~~~~~~~~-~l~s~s~D~~   75 (313)
                      .+.++|+| ++..+++.+.++.|++||..++... .+.+         +.      .....++++|+++ ++++-+.++.
T Consensus       685 P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~-~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~  763 (1057)
T PLN02919        685 PWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTR-VFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSS  763 (1057)
T ss_pred             CeEEEEecCCCeEEEEECCCCeEEEEECCCCeEE-EEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCe
Confidence            46899999 5667777788899999998877542 2211         11      1235689999987 5566667799


Q ss_pred             EEEEECCCCeEEEEecCCCCeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEc
Q 021399           76 AKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWG  155 (313)
Q Consensus        76 v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~  155 (313)
                      |++||+.++.......                    .++..... .....    +.......  ..+    ..-..++++
T Consensus       764 Irv~D~~tg~~~~~~g--------------------g~~~~~~~-l~~fG----~~dG~g~~--~~l----~~P~Gvavd  812 (1057)
T PLN02919        764 IRALDLKTGGSRLLAG--------------------GDPTFSDN-LFKFG----DHDGVGSE--VLL----QHPLGVLCA  812 (1057)
T ss_pred             EEEEECCCCcEEEEEe--------------------cccccCcc-ccccc----CCCCchhh--hhc----cCCceeeEe
Confidence            9999998764321110                    00000000 00000    00000000  001    112367788


Q ss_pred             cCCCEEEEeeCCCeEEEEECCCCceeeeccc----------ccCceeceEEEEECCCCCEEEEeeCCCcEEEEECCCCcE
Q 021399          156 PLNRTIISAGEDAIVRIWDTETGKLLKESDK----------ETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLEL  225 (313)
Q Consensus       156 ~~~~~i~t~~~d~~i~lwd~~~~~~~~~~~~----------~~~h~~~v~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~  225 (313)
                      ++|..+++-..+++|++||..++........          ..+.-.....++++++|+.+++-+.++.|++||+++++.
T Consensus       813 ~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvid~~~~~~  892 (1057)
T PLN02919        813 KDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSLIRYLDLNKGEA  892 (1057)
T ss_pred             CCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCCCEEEEEECCCCcc
Confidence            9999888888999999999987654322110          011223567899999999999999999999999998765

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=98.73  E-value=5.9e-05  Score=74.16  Aligned_cols=252  Identities=13%  Similarity=0.055  Sum_probs=137.8

Q ss_pred             cceeEEEEccC-CCEEEEeeCCCCeEEEeCCCCcEEEEecC-C-C------------CceEEEEECCCCCeEEEee-CCC
Q 021399           11 RPLTYLKYNKD-GDLLFSCAKDHTPTVWFADNGERLGTYRG-H-N------------GAVWCCDVSRDSMTLITGS-ADQ   74 (313)
Q Consensus        11 ~~v~~~~fs~~-g~~l~s~s~d~~i~iw~~~~~~~~~~~~~-H-~------------~~V~~~~~~~~~~~l~s~s-~D~   74 (313)
                      .....++++++ |..+++-+.++.|+++|.. +..+..+.+ . .            ..-..++++++++.++.+. ..+
T Consensus       568 ~~P~gvavd~~~g~lyVaDs~n~rI~v~d~~-G~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~n~  646 (1057)
T PLN02919        568 KFPGKLAIDLLNNRLFISDSNHNRIVVTDLD-GNFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTENH  646 (1057)
T ss_pred             CCCceEEEECCCCeEEEEECCCCeEEEEeCC-CCEEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCCCc
Confidence            44457889875 6677777888999999975 444444432 1 1            1236788988887655554 457


Q ss_pred             cEEEEECCCCeEEEEecC-----------------CCCeeEEEeec-CCeEEEEECC-Cc-eeccccc-eeeeeeeCC-C
Q 021399           75 TAKLWNVETGAQLFTFNF-----------------DSPARSVDFAV-GDKLAVITTD-PF-MELNSAI-HVKRIARDP-A  132 (313)
Q Consensus        75 ~v~vWd~~~~~~~~~~~~-----------------~~~~~~~~~~~-~~~~~~~~~~-~~-~~~~~~~-~~~~~~~~~-~  132 (313)
                      .|+++|+.++........                 -.....+.+.+ ++.+.+.... .. ...+... ....+..+- .
T Consensus       647 ~Ir~id~~~~~V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~~~~G~G~~  726 (1057)
T PLN02919        647 ALREIDFVNETVRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTRVFSGDGYE  726 (1057)
T ss_pred             eEEEEecCCCEEEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEEEEecCCcc
Confidence            899999877654322110                 01223556666 3444333221 11 1100000 000000000 0


Q ss_pred             -CCCCceEEEecCCCCceEEEEEccCCC-EEEEeeCCCeEEEEECCCCceeeecc----------c---cc-----Ccee
Q 021399          133 -DQGGESVLILKGPQGRINRAVWGPLNR-TIISAGEDAIVRIWDTETGKLLKESD----------K---ET-----GHKK  192 (313)
Q Consensus       133 -~~~~~~~~~~~~~~~~i~~~~~~~~~~-~i~t~~~d~~i~lwd~~~~~~~~~~~----------~---~~-----~h~~  192 (313)
                       ...+..  ...........++++|+++ .+++-+.++.|++||+.++.......          .   ..     ..-.
T Consensus       727 ~~~~g~~--~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~  804 (1057)
T PLN02919        727 RNLNGSS--GTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQ  804 (1057)
T ss_pred             ccCCCCc--cccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhcc
Confidence             000000  0000112345688999987 45556677999999988654211000          0   00     0112


Q ss_pred             ceEEEEECCCCCEEEEeeCCCcEEEEECCCCcEEEEEecC--------------CceeEEEeccCCCEEEEcccccCcee
Q 021399          193 TITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTE--------------RPVNAVTMSPLLDHVVLGGGQDASAV  258 (313)
Q Consensus       193 ~v~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~--------------~~~~~~~~~p~~~~~~~~~~~~~~~~  258 (313)
                      ....++++++|+.+++-+.++.|++||.+++.........              .....+++++++. ++++.. ..+.+
T Consensus       805 ~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~-lyVaDt-~Nn~I  882 (1057)
T PLN02919        805 HPLGVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGR-LFVADT-NNSLI  882 (1057)
T ss_pred             CCceeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCC-EEEEEC-CCCEE
Confidence            3468899999999999999999999999887665332111              1356788888886 455432 33456


Q ss_pred             EeeccCCCc
Q 021399          259 TTTDHRAGK  267 (313)
Q Consensus       259 ~~~~~~~~~  267 (313)
                      ..+|...+.
T Consensus       883 rvid~~~~~  891 (1057)
T PLN02919        883 RYLDLNKGE  891 (1057)
T ss_pred             EEEECCCCc
Confidence            666665554

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=98.72  E-value=8.6e-05  Score=61.03  Aligned_cols=225  Identities=15%  Similarity=0.075  Sum_probs=132.8

Q ss_pred             eEEEEcc-CCCEEEEeeCCCCeEEEeCCCCcEEEEecCCCCceEEEEEC-CCCCeEEEeeCCCcEEEEECCCCeEEEEec
Q 021399           14 TYLKYNK-DGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVS-RDSMTLITGSADQTAKLWNVETGAQLFTFN   91 (313)
Q Consensus        14 ~~~~fs~-~g~~l~s~s~d~~i~iw~~~~~~~~~~~~~H~~~V~~~~~~-~~~~~l~s~s~D~~v~vWd~~~~~~~~~~~   91 (313)
                      .+..|.+ ++.++++--..+.|..|+.++++... +....  ...+.+. +++. ++.+..++. .++|+.+++......
T Consensus         3 Egp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~-~~~~~--~~G~~~~~~~g~-l~v~~~~~~-~~~d~~~g~~~~~~~   77 (246)
T PF08450_consen    3 EGPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEV-IDLPG--PNGMAFDRPDGR-LYVADSGGI-AVVDPDTGKVTVLAD   77 (246)
T ss_dssp             EEEEEETTTTEEEEEETTTTEEEEEETTTTEEEE-EESSS--EEEEEEECTTSE-EEEEETTCE-EEEETTTTEEEEEEE
T ss_pred             cceEEECCCCEEEEEEcCCCEEEEEECCCCeEEE-EecCC--CceEEEEccCCE-EEEEEcCce-EEEecCCCcEEEEee
Confidence            4578888 67777777778999999988876532 22222  5566676 6655 445555544 555998886554433


Q ss_pred             C------CCCeeEEEeecCCeEEEEECCCceeccc-cceeeeeeeCCCCCCCceEEEecCCCCceEEEEEccCCCEEE-E
Q 021399           92 F------DSPARSVDFAVGDKLAVITTDPFMELNS-AIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTII-S  163 (313)
Q Consensus        92 ~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~-t  163 (313)
                      .      ......+.+.+++.+.+........... ...++.+..+     +. +..+.......+.++|+|+++.+. +
T Consensus        78 ~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-----~~-~~~~~~~~~~pNGi~~s~dg~~lyv~  151 (246)
T PF08450_consen   78 LPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-----GK-VTVVADGLGFPNGIAFSPDGKTLYVA  151 (246)
T ss_dssp             EETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-----SE-EEEEEEEESSEEEEEEETTSSEEEEE
T ss_pred             ccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-----Ce-EEEEecCcccccceEECCcchheeec
Confidence            2      1234566677776655544321110000 0222222211     11 122222234567899999998664 5


Q ss_pred             eeCCCeEEEEECCCCce-ee---ecccccCceeceEEEEECCCCCEEEEeeCCCcEEEEECCCCcEEEEEecC-CceeEE
Q 021399          164 AGEDAIVRIWDTETGKL-LK---ESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTE-RPVNAV  238 (313)
Q Consensus       164 ~~~d~~i~lwd~~~~~~-~~---~~~~~~~h~~~v~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~-~~~~~~  238 (313)
                      -+..+.|..+++..... +.   .+..........-.+++..+|+..++....+.|.++|.+ ++.+..+..+ ..+.++
T Consensus       152 ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~-G~~~~~i~~p~~~~t~~  230 (246)
T PF08450_consen  152 DSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPD-GKLLREIELPVPRPTNC  230 (246)
T ss_dssp             ETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETT-SCEEEEEE-SSSSEEEE
T ss_pred             ccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCC-ccEEEEEcCCCCCEEEE
Confidence            67788899998753221 21   111111112346779999999988887788999999988 8888887654 567788


Q ss_pred             Ee-ccCCCEEEEc
Q 021399          239 TM-SPLLDHVVLG  250 (313)
Q Consensus       239 ~~-~p~~~~~~~~  250 (313)
                      +| .|+.+.++++
T Consensus       231 ~fgg~~~~~L~vT  243 (246)
T PF08450_consen  231 AFGGPDGKTLYVT  243 (246)
T ss_dssp             EEESTTSSEEEEE
T ss_pred             EEECCCCCEEEEE
Confidence            88 4666666664

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=98.72  E-value=1.1e-07  Score=80.37  Aligned_cols=215  Identities=18%  Similarity=0.207  Sum_probs=141.2

Q ss_pred             ccccceeEEEEccCCCEEEEeeCCCCeEEEeCCC---CcEEEEecCCCCceEEEEECCCCCeEEEeeC-CCcEEEEECCC
Q 021399            8 GHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADN---GERLGTYRGHNGAVWCCDVSRDSMTLITGSA-DQTAKLWNVET   83 (313)
Q Consensus         8 ~h~~~v~~~~fs~~g~~l~s~s~d~~i~iw~~~~---~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~-D~~v~vWd~~~   83 (313)
                      .|.+.|+.+. ....+++.+++.||.++.|--..   -+-++.+.+|-+.|.+++.+.++.++.|.+. |..+|++|+++
T Consensus         7 mhrd~i~hv~-~tka~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn   85 (558)
T KOG0882|consen    7 MHRDVITHVF-PTKAKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVEN   85 (558)
T ss_pred             cccceeeeEe-eehhheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEeec
Confidence            4777777764 34578999999999999995433   1345677899999999999999999999777 99999999987


Q ss_pred             CeEEEEecC--CCCeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEccCCCEE
Q 021399           84 GAQLFTFNF--DSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTI  161 (313)
Q Consensus        84 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i  161 (313)
                      -..+..+..  -.....+..++++....+.....  -.+.+.+.    +......+....-.-|.++|....+.+.+..+
T Consensus        86 ~DminmiKL~~lPg~a~wv~skGd~~s~IAVs~~--~sg~i~Vv----D~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds~  159 (558)
T KOG0882|consen   86 FDMINMIKLVDLPGFAEWVTSKGDKISLIAVSLF--KSGKIFVV----DGFGDFCQDGYFKKLHFSPVKKIRYNQAGDSA  159 (558)
T ss_pred             cchhhhcccccCCCceEEecCCCCeeeeEEeecc--cCCCcEEE----CCcCCcCccceecccccCceEEEEeeccccce
Confidence            554322222  12222333344544333221100  00111111    11111112223334578899999999999999


Q ss_pred             EEeeCCCeEEEEECCC-Cceeee-cccc----------cCceeceEEEEECCCCCEEEEeeCCCcEEEEECCCCcEEEEE
Q 021399          162 ISAGEDAIVRIWDTET-GKLLKE-SDKE----------TGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTY  229 (313)
Q Consensus       162 ~t~~~d~~i~lwd~~~-~~~~~~-~~~~----------~~h~~~v~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~  229 (313)
                      ++....|.|.-|..+- -+..+. +...          .-......++.++|+|..+.+-+.|..|++++.++++.++.+
T Consensus       160 vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGklvqei  239 (558)
T KOG0882|consen  160 VSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKLVQEI  239 (558)
T ss_pred             eeccccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccCcccEEEEEEeccchhhhhh
Confidence            9999999999998762 110000 1100          112456788999999999999999999999999999776554

>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=98.69  E-value=3.4e-07  Score=74.05  Aligned_cols=245  Identities=17%  Similarity=0.173  Sum_probs=137.6

Q ss_pred             ccceeEEEEccCCCEEEEeeCCCCeEEEeCCCCc-----EEEEecCCCC------------ceEEEEECCCCC--eEEEe
Q 021399           10 ERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGE-----RLGTYRGHNG------------AVWCCDVSRDSM--TLITG   70 (313)
Q Consensus        10 ~~~v~~~~fs~~g~~l~s~s~d~~i~iw~~~~~~-----~~~~~~~H~~------------~V~~~~~~~~~~--~l~s~   70 (313)
                      .+.|+++.|...|.+|++|...|+|.++.-+...     ....|++|+.            .|..+.|-.+++  .|+-.
T Consensus        26 ad~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLls  105 (460)
T COG5170          26 ADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLLS  105 (460)
T ss_pred             cceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEEe
Confidence            4468899999999999999999999999655432     2345677764            377788765432  56667


Q ss_pred             eCCCcEEEEECCCCeEEEEecCCCCeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEe-cCCCCce
Q 021399           71 SADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLIL-KGPQGRI  149 (313)
Q Consensus        71 s~D~~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i  149 (313)
                      +.|++||+|.+.+......... .-..++.+.-++.+.   +.....+....+-..+.      ...+..+. ..|.-.|
T Consensus       106 tNdktiKlWKiyeknlk~va~n-nls~~~~~~~~g~~~---s~~~l~lprls~hd~ii------aa~p~rvyaNaH~yhi  175 (460)
T COG5170         106 TNDKTIKLWKIYEKNLKVVAEN-NLSDSFHSPMGGPLT---STKELLLPRLSEHDEII------AAKPCRVYANAHPYHI  175 (460)
T ss_pred             cCCceeeeeeeecccchhhhcc-ccccccccccCCCcC---CHHHhhcccccccceEE------EeccceeccccceeEe
Confidence            8999999999876532211110 000001000011000   00000000000000000      00111111 3466678


Q ss_pred             EEEEEccCCCEEEEeeCCCeEEEEECCCCce-eeecccccCc-----eeceEEEEECCCCC-EEEEeeCCCcEEEEECCC
Q 021399          150 NRAVWGPLNRTIISAGEDAIVRIWDTETGKL-LKESDKETGH-----KKTITSLAKAADGS-HFLTGSLDKSAKLWDART  222 (313)
Q Consensus       150 ~~~~~~~~~~~i~t~~~d~~i~lwd~~~~~~-~~~~~~~~~h-----~~~v~~~~~s~~~~-~l~s~s~dg~i~iwd~~~  222 (313)
                      +++.++.+.+.++++. |-+|.+|++.-... ...+. ..+|     ...|++..|+|... .+.-.++.|.|++-|+|.
T Consensus       176 NSiS~NsD~et~lSaD-dLrINLWnl~i~D~sFnIVD-iKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq  253 (460)
T COG5170         176 NSISFNSDKETLLSAD-DLRINLWNLEIIDGSFNIVD-IKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQ  253 (460)
T ss_pred             eeeeecCchheeeecc-ceeeeeccccccCCceEEEe-ccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhh
Confidence            8999998888777654 78899998753221 11111 1122     24577888988654 455667789999999984


Q ss_pred             CcEE------EEEe-c----------CCceeEEEeccCCCEEEEcccccCceeEeeccCCCcee
Q 021399          223 LELI------KTYV-T----------ERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFE  269 (313)
Q Consensus       223 ~~~~------~~~~-~----------~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~  269 (313)
                      ..+.      .... .          -..+..+.|++.+.+++.   -+...+.+||.+..+..
T Consensus       254 ~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIls---RdyltvkiwDvnm~k~p  314 (460)
T COG5170         254 SALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILS---RDYLTVKIWDVNMAKNP  314 (460)
T ss_pred             hhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEE---eccceEEEEecccccCC
Confidence            3211      1100 0          124667889999887764   24566777777655443

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=98.69  E-value=1.7e-06  Score=77.46  Aligned_cols=237  Identities=11%  Similarity=0.123  Sum_probs=138.6

Q ss_pred             ccccccccceeEEEEccCCCEEEEeeCCCCeEEEeCCCCcEEEEec--CCCCceEEEEECCCCCeEEEeeCCCcEEEEEC
Q 021399            4 ILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYR--GHNGAVWCCDVSRDSMTLITGSADQTAKLWNV   81 (313)
Q Consensus         4 ~~l~~h~~~v~~~~fs~~g~~l~s~s~d~~i~iw~~~~~~~~~~~~--~H~~~V~~~~~~~~~~~l~s~s~D~~v~vWd~   81 (313)
                      ++|.||++.|.-+.|+.+.+.|-|...+|.|.||-+-.+.-.....  ...+-|.+++|+.||+.+...-.||.|.+=.+
T Consensus        65 QtLeGH~~sV~vvTWNe~~QKLTtSDt~GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsv  144 (1189)
T KOG2041|consen   65 QTLEGHNASVMVVTWNENNQKLTTSDTSGLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSV  144 (1189)
T ss_pred             hhhccCcceEEEEEeccccccccccCCCceEEEEeeecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEee
Confidence            5899999999999999999999999999999999876664332222  23455789999999998888888888877665


Q ss_pred             CCCeEEEEecCC-CCeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCC-CCce-E---EEecCCCCceEEEEE-
Q 021399           82 ETGAQLFTFNFD-SPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQ-GGES-V---LILKGPQGRINRAVW-  154 (313)
Q Consensus        82 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~---~~~~~~~~~i~~~~~-  154 (313)
                      +. ..++-.... .....+.|+++...++..-     .++..++++...+.... ..+. +   ..+..-.-+|..+.| 
T Consensus       145 dG-NRIwgKeLkg~~l~hv~ws~D~~~~Lf~~-----ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~  218 (1189)
T KOG2041|consen  145 DG-NRIWGKELKGQLLAHVLWSEDLEQALFKK-----ANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWN  218 (1189)
T ss_pred             cc-ceecchhcchheccceeecccHHHHHhhh-----cCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeec
Confidence            43 333322211 1122344555544332211     11122222111111000 0000 0   001101112333333 


Q ss_pred             -------ccCCCEEEEeeCCCeEEEEECCCCceeeecccccCceeceEEEEECCCCCEEEEeeCCC---------cEEEE
Q 021399          155 -------GPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDK---------SAKLW  218 (313)
Q Consensus       155 -------~~~~~~i~t~~~d~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~dg---------~i~iw  218 (313)
                             .|+.+.++.+-..|.+.|..-.+....-.+.    -...+....|+++|..|+.++.|.         .|.++
T Consensus       219 ~g~~~~v~pdrP~lavcy~nGr~QiMR~eND~~Pvv~d----tgm~~vgakWnh~G~vLAvcG~~~da~~~~d~n~v~Fy  294 (1189)
T KOG2041|consen  219 TGPYQPVPPDRPRLAVCYANGRMQIMRSENDPEPVVVD----TGMKIVGAKWNHNGAVLAVCGNDSDADEPTDSNKVHFY  294 (1189)
T ss_pred             cCccccCCCCCCEEEEEEcCceehhhhhcCCCCCeEEe----cccEeecceecCCCcEEEEccCcccccCccccceEEEe
Confidence                   3577899999999998887543322111111    124677788999999999988652         34444


Q ss_pred             ECCCCcEEEEEec-CCceeEEEeccCCCEEEEcc
Q 021399          219 DARTLELIKTYVT-ERPVNAVTMSPLLDHVVLGG  251 (313)
Q Consensus       219 d~~~~~~~~~~~~-~~~~~~~~~~p~~~~~~~~~  251 (313)
                      .. -|+.+.++.. ...+..++|-..+-.++++.
T Consensus       295 sp-~G~i~gtlkvpg~~It~lsWEg~gLriA~Av  327 (1189)
T KOG2041|consen  295 SP-YGHIVGTLKVPGSCITGLSWEGTGLRIAIAV  327 (1189)
T ss_pred             cc-chhheEEEecCCceeeeeEEcCCceEEEEEe
Confidence            32 3556666654 45688888877665555543

>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]

Probab=98.65  E-value=2.5e-05  Score=67.48  Aligned_cols=101  Identities=12%  Similarity=0.123  Sum_probs=71.0

Q ss_pred             CCCCceEEEEEccCCCEEEEee--CCCeEEEEECCCCceeeecccccCceeceEEEEECCCCCEEEEeeCC---CcEEEE
Q 021399          144 GPQGRINRAVWGPLNRTIISAG--EDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLD---KSAKLW  218 (313)
Q Consensus       144 ~~~~~i~~~~~~~~~~~i~t~~--~d~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d---g~i~iw  218 (313)
                      +..++|...+|.|.++.|++.+  ..-.+.++|++..  ++-..    -...=.-+.|+|.+.+++.++.|   |.+-+|
T Consensus       272 ~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N--l~~~~----Pe~~rNT~~fsp~~r~il~agF~nl~gni~i~  345 (561)
T COG5354         272 DLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN--LRFYF----PEQKRNTIFFSPHERYILFAGFDNLQGNIEIF  345 (561)
T ss_pred             cccccceeeeecccCCceeEEecccccceeecccccc--eEEec----CCcccccccccCcccEEEEecCCccccceEEe
Confidence            5578999999999999887765  5667888998754  22221    12334556799999999998876   568999


Q ss_pred             ECCCCcEEE-EEecCCceeEEEeccCCCEEEEcc
Q 021399          219 DARTLELIK-TYVTERPVNAVTMSPLLDHVVLGG  251 (313)
Q Consensus       219 d~~~~~~~~-~~~~~~~~~~~~~~p~~~~~~~~~  251 (313)
                      |....-.+. .+.. ....-+.|+|+++.+.++.
T Consensus       346 ~~~~rf~~~~~~~~-~n~s~~~wspd~qF~~~~~  378 (561)
T COG5354         346 DPAGRFKVAGAFNG-LNTSYCDWSPDGQFYDTDT  378 (561)
T ss_pred             ccCCceEEEEEeec-CCceEeeccCCceEEEecC
Confidence            987644333 4332 2344567999998877653

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=98.63  E-value=4.3e-05  Score=67.05  Aligned_cols=71  Identities=17%  Similarity=0.210  Sum_probs=52.9

Q ss_pred             CCCEEEEeeCCCCeEEEeCCCCcEEEEecCCCCceEEEEECCCCCeEEEeeCCCcEEEEECCCCeEEEEecCC
Q 021399           21 DGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFNFD   93 (313)
Q Consensus        21 ~g~~l~s~s~d~~i~iw~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~v~vWd~~~~~~~~~~~~~   93 (313)
                      .+.+++.++.++.+.-+|.++|+.+...+-..........  ++..++.++.|+.+..+|..+++.++.....
T Consensus        64 ~~~~v~v~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~p~v--~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~  134 (377)
T TIGR03300        64 AGGKVYAADADGTVVALDAETGKRLWRVDLDERLSGGVGA--DGGLVFVGTEKGEVIALDAEDGKELWRAKLS  134 (377)
T ss_pred             ECCEEEEECCCCeEEEEEccCCcEeeeecCCCCcccceEE--cCCEEEEEcCCCEEEEEECCCCcEeeeeccC
Confidence            3668888999999999999999998776644332222332  3557778888999999999999988766543

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.56  E-value=4.5e-06  Score=69.88  Aligned_cols=80  Identities=11%  Similarity=0.233  Sum_probs=71.6

Q ss_pred             cccccccceeEEEEccCCC-EEEEeeCCCCeEEEeCCCCcEEEEecCCCCceEEEEECCCC-CeEEEeeCCCcEEEEECC
Q 021399            5 LMKGHERPLTYLKYNKDGD-LLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDS-MTLITGSADQTAKLWNVE   82 (313)
Q Consensus         5 ~l~~h~~~v~~~~fs~~g~-~l~s~s~d~~i~iw~~~~~~~~~~~~~H~~~V~~~~~~~~~-~~l~s~s~D~~v~vWd~~   82 (313)
                      .+.+|...|..++|||..+ +|..++.+..|+|.|+++..++.++..| ..+|+++|.-|. +.+..|...|.|.|+|++
T Consensus       188 ~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~-~~~wSC~wDlde~h~IYaGl~nG~VlvyD~R  266 (463)
T KOG1645|consen  188 ILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAY-NQIWSCCWDLDERHVIYAGLQNGMVLVYDMR  266 (463)
T ss_pred             cccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheecc-CCceeeeeccCCcceeEEeccCceEEEEEcc
Confidence            6778889999999999988 7888999999999999999999999998 789999998765 478888899999999997


Q ss_pred             CCe
Q 021399           83 TGA   85 (313)
Q Consensus        83 ~~~   85 (313)
                      ..+
T Consensus       267 ~~~  269 (463)
T KOG1645|consen  267 QPE  269 (463)
T ss_pred             CCC
Confidence            654

>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation []

Probab=98.56  E-value=0.00011  Score=71.15  Aligned_cols=258  Identities=16%  Similarity=0.188  Sum_probs=143.7

Q ss_pred             ceeEEEEccCCCEEEEeeC--CC--CeEEEeCCCCc---EEEEec-----CCCCceEEEEECCCCCeEEEeeCCCcEEEE
Q 021399           12 PLTYLKYNKDGDLLFSCAK--DH--TPTVWFADNGE---RLGTYR-----GHNGAVWCCDVSRDSMTLITGSADQTAKLW   79 (313)
Q Consensus        12 ~v~~~~fs~~g~~l~s~s~--d~--~i~iw~~~~~~---~~~~~~-----~H~~~V~~~~~~~~~~~l~s~s~D~~v~vW   79 (313)
                      .+...+|++....++....  ..  .|.+.......   .+..+.     ...+.|.++.+-++.+.++.+..+|.|.+.
T Consensus        23 ~~~~~~~d~~sd~i~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~~~~~~~~~~ivs~~yl~d~~~l~~~~~~Gdi~~~  102 (928)
T PF04762_consen   23 PITATAFDSDSDSIYFVLGPNEIDYVIELDRFSQDGSVEVLASWDAPLPDDPNDKIVSFQYLADSESLCIALASGDIILV  102 (928)
T ss_pred             ccceEEEecCCCeEEEEECCCCcceEEEEEeeccCCceeEEEeccccCCcCCCCcEEEEEeccCCCcEEEEECCceEEEE
Confidence            4566777776654443332  22  23333322222   233333     234678999999998888888999999999


Q ss_pred             ----ECCCCeEEEEecCCCCeeEEEeecCCeEEEEECCC--ceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEE
Q 021399           80 ----NVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDP--FMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAV  153 (313)
Q Consensus        80 ----d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~  153 (313)
                          +..+.........+..+.++.|+|++.++++.+..  ...+...                        -..+....
T Consensus       103 ~~~~~~~~~~~E~VG~vd~GI~a~~WSPD~Ella~vT~~~~l~~mt~~------------------------fd~i~E~~  158 (928)
T PF04762_consen  103 REDPDPDEDEIEIVGSVDSGILAASWSPDEELLALVTGEGNLLLMTRD------------------------FDPISEVP  158 (928)
T ss_pred             EccCCCCCceeEEEEEEcCcEEEEEECCCcCEEEEEeCCCEEEEEecc------------------------ceEEEEee
Confidence                77776666666778899999999988777765532  1111111                        11111111


Q ss_pred             EccC---CCEEEEeeCCCeEEEEECCCCce----ee-----ec--ccccCceeceEEEEECCCCCEEEEeeC---C---C
Q 021399          154 WGPL---NRTIISAGEDAIVRIWDTETGKL----LK-----ES--DKETGHKKTITSLAKAADGSHFLTGSL---D---K  213 (313)
Q Consensus       154 ~~~~---~~~i~t~~~d~~i~lwd~~~~~~----~~-----~~--~~~~~h~~~v~~~~~s~~~~~l~s~s~---d---g  213 (313)
                      +.++   ....++.|...+=.-|-=.-++.    ++     +.  .... +...-..++|-.||.++|+.+.   .   .
T Consensus       159 l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s-~dd~~~~ISWRGDG~yFAVss~~~~~~~~R  237 (928)
T PF04762_consen  159 LDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLS-WDDGRVRISWRGDGEYFAVSSVEPETGSRR  237 (928)
T ss_pred             cCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccc-cCCCceEEEECCCCcEEEEEEEEcCCCcee
Confidence            1111   11233333322211111000110    00     00  0111 3445678899999999998885   3   4


Q ss_pred             cEEEEECCCCcEEEEEe-cCCceeEEEeccCCCEEEEcccc-cCceeEeecc---CCCceeeeeeehhhhhhhccccccc
Q 021399          214 SAKLWDARTLELIKTYV-TERPVNAVTMSPLLDHVVLGGGQ-DASAVTTTDH---RAGKFEAKFFDKILQEEIGGVKGHF  288 (313)
Q Consensus       214 ~i~iwd~~~~~~~~~~~-~~~~~~~~~~~p~~~~~~~~~~~-~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~h~  288 (313)
                      .+|+|+-+ |++-.+-. .++--.+++|.|.|+.++.+-.. +...+..+..   |-+.|.+++            ....
T Consensus       238 ~iRVy~Re-G~L~stSE~v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfErNGLrhgeF~l~~------------~~~~  304 (928)
T PF04762_consen  238 VIRVYSRE-GELQSTSEPVDGLEGALSWRPSGNLIASSQRLPDRHDVVFFERNGLRHGEFTLRF------------DPEE  304 (928)
T ss_pred             EEEEECCC-ceEEeccccCCCccCCccCCCCCCEEEEEEEcCCCcEEEEEecCCcEeeeEecCC------------CCCC
Confidence            79999876 55433322 23345679999999866654321 1222333321   222232222            1235


Q ss_pred             cceeEEEECCCCCeeEEEE
Q 021399          289 GPINALAFNPDGKRYGFLL  307 (313)
Q Consensus       289 ~~V~~~~fspdgk~~~~~~  307 (313)
                      ..|..|+||+|+..+|...
T Consensus       305 ~~v~~l~Wn~ds~iLAv~~  323 (928)
T PF04762_consen  305 EKVIELAWNSDSEILAVWL  323 (928)
T ss_pred             ceeeEEEECCCCCEEEEEe
Confidence            6889999999999999865

>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=98.55  E-value=2.7e-06  Score=69.84  Aligned_cols=182  Identities=15%  Similarity=0.209  Sum_probs=114.9

Q ss_pred             ccccccceeEEEEccCCCEEEEeeCCCCeEEEeCCCCcEEE---EecCCC-----CceEEEEECCC-CCeEEEeeCCCcE
Q 021399            6 MKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLG---TYRGHN-----GAVWCCDVSRD-SMTLITGSADQTA   76 (313)
Q Consensus         6 l~~h~~~v~~~~fs~~g~~l~s~s~d~~i~iw~~~~~~~~~---~~~~H~-----~~V~~~~~~~~-~~~l~s~s~D~~v   76 (313)
                      -.+|+-.|.+++++.|.+.++|+. |=.|.+|+++-...--   -++-|.     .-|++..|+|. .+.|+=.++.|+|
T Consensus       160 aNaHtyhiNSIS~NsD~Et~lSAD-dLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtI  238 (433)
T KOG1354|consen  160 ANAHTYHINSISVNSDKETFLSAD-DLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTI  238 (433)
T ss_pred             cccceeEeeeeeecCccceEeecc-ceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcE
Confidence            356888999999999999999764 6788999887433211   223332     24688899986 3577777889999


Q ss_pred             EEEECCCCeEEEEecCCCCeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEcc
Q 021399           77 KLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGP  156 (313)
Q Consensus        77 ~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~  156 (313)
                      ++-|++.....-...                                  .+..++.++.  ....+..--..|..+.|+.
T Consensus       239 rLcDmR~~aLCd~hs----------------------------------KlfEepedp~--~rsffseiIsSISDvKFs~  282 (433)
T KOG1354|consen  239 RLCDMRQSALCDAHS----------------------------------KLFEEPEDPS--SRSFFSEIISSISDVKFSH  282 (433)
T ss_pred             EEeechhhhhhcchh----------------------------------hhhccccCCc--chhhHHHHhhhhhceEEcc
Confidence            999998543210000                                  0000011100  0000111123567889999


Q ss_pred             CCCEEEEeeCCCeEEEEECCC-CceeeecccccC---------ceece---EEEEECCCCCEEEEeeCCCcEEEEECCCC
Q 021399          157 LNRTIISAGEDAIVRIWDTET-GKLLKESDKETG---------HKKTI---TSLAKAADGSHFLTGSLDKSAKLWDARTL  223 (313)
Q Consensus       157 ~~~~i~t~~~d~~i~lwd~~~-~~~~~~~~~~~~---------h~~~v---~~~~~s~~~~~l~s~s~dg~i~iwd~~~~  223 (313)
                      .|+++++-.. -+|+|||+.. .+++.+...+.-         .+..|   ..++|+.++.+++|||..+..+++++..+
T Consensus       283 sGryilsRDy-ltvk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~IfdKFec~~sg~~~~v~TGsy~n~frvf~~~~g  361 (433)
T KOG1354|consen  283 SGRYILSRDY-LTVKLWDLNMEAKPVETYPVHEYLRSKLCSLYENDAIFDKFECSWSGNDSYVMTGSYNNVFRVFNLARG  361 (433)
T ss_pred             CCcEEEEecc-ceeEEEeccccCCcceEEeehHhHHHHHHHHhhccchhheeEEEEcCCcceEecccccceEEEecCCCC
Confidence            9999997654 6899999843 333333221100         12223   45789999999999999999999997765


Q ss_pred             cE
Q 021399          224 EL  225 (313)
Q Consensus       224 ~~  225 (313)
                      ..
T Consensus       362 sk  363 (433)
T KOG1354|consen  362 SK  363 (433)
T ss_pred             cc
Confidence            43

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=98.52  E-value=8e-05  Score=64.01  Aligned_cols=169  Identities=15%  Similarity=0.180  Sum_probs=115.1

Q ss_pred             CCCEEEEeeCCCCeEEEeCCCCcEEEEecCCCCceEEEEECCCCCeEEEeeCCC-cEEEEECCCCeEEEEecCCCCeeEE
Q 021399           21 DGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQ-TAKLWNVETGAQLFTFNFDSPARSV   99 (313)
Q Consensus        21 ~g~~l~s~s~d~~i~iw~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~-~v~vWd~~~~~~~~~~~~~~~~~~~   99 (313)
                      +|++++..|. |.+-|.+.-.+-.+  --+|.+.|.-..+..+++-++.|..|| .+-|+|.++++..            
T Consensus       331 ~Gd~ia~VSR-GkaFi~~~~~~~~i--qv~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~k------------  395 (668)
T COG4946         331 NGDYIALVSR-GKAFIMRPWDGYSI--QVGKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEVK------------  395 (668)
T ss_pred             CCcEEEEEec-CcEEEECCCCCeeE--EcCCCCceEEEEEccCCcceEEeccCCceEEEEecCCceEE------------
Confidence            5777777665 45555554444332  235666777667776777777888887 7778887765432            


Q ss_pred             EeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEccCCCEEEEeeCCCeEEEEECCCCc
Q 021399          100 DFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGK  179 (313)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~t~~~d~~i~lwd~~~~~  179 (313)
                                                               ..+..-+.|..+..+|+|+.++.+.....|-+.|+.++.
T Consensus       396 -----------------------------------------r~e~~lg~I~av~vs~dGK~~vvaNdr~el~vididngn  434 (668)
T COG4946         396 -----------------------------------------RIEKDLGNIEAVKVSPDGKKVVVANDRFELWVIDIDNGN  434 (668)
T ss_pred             -----------------------------------------EeeCCccceEEEEEcCCCcEEEEEcCceEEEEEEecCCC
Confidence                                                     122234567778889999999988888888888998886


Q ss_pred             eeeecccccCceeceEEEEECCCCCEEEEeeCCC----cEEEEECCCCcEEEEEecCCceeEEEeccCCCEEE
Q 021399          180 LLKESDKETGHKKTITSLAKAADGSHFLTGSLDK----SAKLWDARTLELIKTYVTERPVNAVTMSPLLDHVV  248 (313)
Q Consensus       180 ~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~dg----~i~iwd~~~~~~~~~~~~~~~~~~~~~~p~~~~~~  248 (313)
                      . +.+..  +..+.|+.++|+|++.+||-+--+|    .|+++|+..++..........-.+-+|.|++.++.
T Consensus       435 v-~~idk--S~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~Kiy~vTT~ta~DfsPaFD~d~ryLY  504 (668)
T COG4946         435 V-RLIDK--SEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKIYDVTTPTAYDFSPAFDPDGRYLY  504 (668)
T ss_pred             e-eEecc--cccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCeEEEecCCcccccCcccCCCCcEEE
Confidence            4 23332  3567899999999999999765554    68999999888765544333344555666666554

>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.51  E-value=4.8e-06  Score=75.48  Aligned_cols=158  Identities=11%  Similarity=0.106  Sum_probs=109.3

Q ss_pred             cceeEEEEccCCCEEEEeeCCCCeEEEeCCCCcEEEEecCCCCceEEEEECCCCCeEEEeeCCCcEEEEECCCCeEEEEe
Q 021399           11 RPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTF   90 (313)
Q Consensus        11 ~~v~~~~fs~~g~~l~s~s~d~~i~iw~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~v~vWd~~~~~~~~~~   90 (313)
                      +.+.|++++  +++|+-|.-+|.|++.+.. +.. ++...|+..      ..+|++++|||.||+|.|-.+.+.+.....
T Consensus        40 D~is~~av~--~~~~~~GtH~g~v~~~~~~-~~~-~~~~~~s~~------~~~Gey~asCS~DGkv~I~sl~~~~~~~~~  109 (846)
T KOG2066|consen   40 DAISCCAVH--DKFFALGTHRGAVYLTTCQ-GNP-KTNFDHSSS------ILEGEYVASCSDDGKVVIGSLFTDDEITQY  109 (846)
T ss_pred             hHHHHHHhh--cceeeeccccceEEEEecC-Ccc-ccccccccc------ccCCceEEEecCCCcEEEeeccCCccceeE
Confidence            345666665  6799999999999999864 333 455556554      567999999999999999998888777777


Q ss_pred             cCCCCeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEccCCCEEEEeeCCCeE
Q 021399           91 NFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIV  170 (313)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~t~~~d~~i  170 (313)
                      .+..++.++.+.|+=.                                                -...+.+++||.-| +
T Consensus       110 df~rpiksial~Pd~~------------------------------------------------~~~sk~fv~GG~ag-l  140 (846)
T KOG2066|consen  110 DFKRPIKSIALHPDFS------------------------------------------------RQQSKQFVSGGMAG-L  140 (846)
T ss_pred             ecCCcceeEEeccchh------------------------------------------------hhhhhheeecCcce-E
Confidence            7766666665554200                                                00135688888888 7


Q ss_pred             EEEECCCCceeeecccccCceeceEEEEECCCCCEEEEeeCCCcEEEEECCCCcEEEEEec
Q 021399          171 RIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVT  231 (313)
Q Consensus       171 ~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~  231 (313)
                      .++..+--.....+ ....-.+.|.++.|.  |++||=++.+| |++||+.+.+.+..+..
T Consensus       141 vL~er~wlgnk~~v-~l~~~eG~I~~i~W~--g~lIAWand~G-v~vyd~~~~~~l~~i~~  197 (846)
T KOG2066|consen  141 VLSERNWLGNKDSV-VLSEGEGPIHSIKWR--GNLIAWANDDG-VKVYDTPTRQRLTNIPP  197 (846)
T ss_pred             EEehhhhhcCccce-eeecCccceEEEEec--CcEEEEecCCC-cEEEeccccceeeccCC
Confidence            77764321111111 112346789999996  77888887666 79999999888776653

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=98.47  E-value=0.00021  Score=59.44  Aligned_cols=207  Identities=14%  Similarity=0.212  Sum_probs=128.5

Q ss_pred             eEEEEccCCCEEEEeeC-CCCeEEEeCCC-CcEEE--EecCCCCc----------eEEEEECCCCCeEEEeeC-CCcEEE
Q 021399           14 TYLKYNKDGDLLFSCAK-DHTPTVWFADN-GERLG--TYRGHNGA----------VWCCDVSRDSMTLITGSA-DQTAKL   78 (313)
Q Consensus        14 ~~~~fs~~g~~l~s~s~-d~~i~iw~~~~-~~~~~--~~~~H~~~----------V~~~~~~~~~~~l~s~s~-D~~v~v   78 (313)
                      ..++++++|++++++.- -|.|.++-+.+ |.+..  .+..|.++          +.+..+.|+++++++.+- -..|.+
T Consensus        92 ~yvsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~  171 (346)
T COG2706          92 CYVSVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFL  171 (346)
T ss_pred             eEEEECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEE
Confidence            66899999999999875 58899997754 43321  22335444          788899999999888752 346889


Q ss_pred             EECCCCeEEEE----ecCCCCeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCC---ceEEEec---CCCCc
Q 021399           79 WNVETGAQLFT----FNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGG---ESVLILK---GPQGR  148 (313)
Q Consensus        79 Wd~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~---~~~~~  148 (313)
                      +++++++....    +......+.+.|+|..+++.+.+.    +++.+.++....  ....-   +.+..+.   .....
T Consensus       172 y~~~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~E----L~stV~v~~y~~--~~g~~~~lQ~i~tlP~dF~g~~~  245 (346)
T COG2706         172 YDLDDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNE----LNSTVDVLEYNP--AVGKFEELQTIDTLPEDFTGTNW  245 (346)
T ss_pred             EEcccCccccccccccCCCCCcceEEEcCCCcEEEEEec----cCCEEEEEEEcC--CCceEEEeeeeccCccccCCCCc
Confidence            99998765322    123456778899999999887653    222222222111  00000   0111111   11234


Q ss_pred             eEEEEEccCCCEEEEeeC-CCeEEEEECCC-CceeeecccccCceeceEEEEECCCCCEEEEeeCC-CcEEEEE--CCCC
Q 021399          149 INRAVWGPLNRTIISAGE-DAIVRIWDTET-GKLLKESDKETGHKKTITSLAKAADGSHFLTGSLD-KSAKLWD--ARTL  223 (313)
Q Consensus       149 i~~~~~~~~~~~i~t~~~-d~~i~lwd~~~-~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d-g~i~iwd--~~~~  223 (313)
                      ...+-++++|+++..+.+ ...|-++.+.. +..+..+.....+....+.+.+++.|++|+++..| ..|.+|.  -+||
T Consensus       246 ~aaIhis~dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g~~Liaa~q~sd~i~vf~~d~~TG  325 (346)
T COG2706         246 AAAIHISPDGRFLYASNRGHDSIAVFSVDPDGGKLELVGITPTEGQFPRDFNINPSGRFLIAANQKSDNITVFERDKETG  325 (346)
T ss_pred             eeEEEECCCCCEEEEecCCCCeEEEEEEcCCCCEEEEEEEeccCCcCCccceeCCCCCEEEEEccCCCcEEEEEEcCCCc
Confidence            556778899998776643 23566766532 23344333334456678999999999999998864 4588885  4455


Q ss_pred             cEE
Q 021399          224 ELI  226 (313)
Q Consensus       224 ~~~  226 (313)
                      ++-
T Consensus       326 ~L~  328 (346)
T COG2706         326 RLT  328 (346)
T ss_pred             eEE
Confidence            553

>KOG2695 consensus WD40 repeat protein [General function prediction only]

Probab=98.45  E-value=9.7e-07  Score=72.39  Aligned_cols=168  Identities=9%  Similarity=0.095  Sum_probs=109.3

Q ss_pred             EEEccCC-CEEEEeeCCCCeEEEeCCCCcEEEEecCCCCceEEEEECCCCCeEEEeeCCCcEEEEECCCCeEEEEecCCC
Q 021399           16 LKYNKDG-DLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFNFDS   94 (313)
Q Consensus        16 ~~fs~~g-~~l~s~s~d~~i~iw~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~v~vWd~~~~~~~~~~~~~~   94 (313)
                      ++|+-+- .+-++.+.+-.|-+-+++++-.. .|. -.+.|+++.|...++++..|.+.|.|...|++...+-      .
T Consensus       217 CawSlni~gyhfs~G~sqqv~L~nvetg~~q-sf~-sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG------~  288 (425)
T KOG2695|consen  217 CAWSLNIMGYHFSVGLSQQVLLTNVETGHQQ-SFQ-SKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQG------N  288 (425)
T ss_pred             hhhhhccceeeecccccceeEEEEeeccccc-ccc-cchhHHHHHhcccCCeeEecccCCcEEEEEeeecccC------C
Confidence            3566432 23366777777788888877543 333 4678999999888889999999999999999865210      0


Q ss_pred             CeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEcc-CCCEEEEeeCCCeEEEE
Q 021399           95 PARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGP-LNRTIISAGEDAIVRIW  173 (313)
Q Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~i~t~~~d~~i~lw  173 (313)
                      .-                                         .. ..-.|.+.+++++.-. ++.+++..+-+|+|+||
T Consensus       289 ~~-----------------------------------------~a-~rlyh~Ssvtslq~Lq~s~q~LmaS~M~gkikLy  326 (425)
T KOG2695|consen  289 GW-----------------------------------------CA-QRLYHDSSVTSLQILQFSQQKLMASDMTGKIKLY  326 (425)
T ss_pred             Cc-----------------------------------------ce-EEEEcCcchhhhhhhccccceEeeccCcCceeEe
Confidence            00                                         00 0011334444444332 45678888999999999


Q ss_pred             ECCCCceeeecccccCceece--EEEEECCCCCEEEEeeCCCcEEEEECCCCcEEEEEecCC
Q 021399          174 DTETGKLLKESDKETGHKKTI--TSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTER  233 (313)
Q Consensus       174 d~~~~~~~~~~~~~~~h~~~v--~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~  233 (313)
                      |.+.-++-..+..-.||...-  .-+-..+....|++++.|-..|||.++.+.++.++..+.
T Consensus       327 D~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~ghLl~tipf~~  388 (425)
T KOG2695|consen  327 DLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDSGHLLCTIPFPY  388 (425)
T ss_pred             eehhhhcccceeeeecccccccccccccccccceEEEccCeeEEEEEecccCceeeccCCCC
Confidence            987655511122223453322  222345566679999999999999999999998886543

>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]

Probab=98.43  E-value=1.7e-06  Score=79.28  Aligned_cols=144  Identities=17%  Similarity=0.206  Sum_probs=100.4

Q ss_pred             cCCCEEEEeeCCCCeEEEeCCCCcEEEEecCCCCceEEEEECCCCCeEEEeeC---------CCcEEEEECCCCeEEEEe
Q 021399           20 KDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSA---------DQTAKLWNVETGAQLFTF   90 (313)
Q Consensus        20 ~~g~~l~s~s~d~~i~iw~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~---------D~~v~vWd~~~~~~~~~~   90 (313)
                      .++++|++|...|+|.+-|..+-+.++++.+|.+.|....  -.|++|+|||.         |..|+|||++....+..+
T Consensus       185 ~Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siSDfD--v~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI  262 (1118)
T KOG1275|consen  185 YNNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSISDFD--VQGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPI  262 (1118)
T ss_pred             ecCcEEEeecccceEEeecCCcCceeeeeeccccceeeee--ccCCeEEEeecccccccccccchhhhhhhhhhhccCCc
Confidence            4688999999999999999999999999999999996555  45889999984         566889998875543222


Q ss_pred             cCCCCeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEccC-CCEEEEeeCCCe
Q 021399           91 NFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPL-NRTIISAGEDAI  169 (313)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~i~t~~~d~~  169 (313)
                      .+.-...                                                     -+.|+|. ...+++++..|.
T Consensus       263 ~~~~~P~-----------------------------------------------------flrf~Psl~t~~~V~S~sGq  289 (1118)
T KOG1275|consen  263 QFPYGPQ-----------------------------------------------------FLRFHPSLTTRLAVTSQSGQ  289 (1118)
T ss_pred             ccccCch-----------------------------------------------------hhhhcccccceEEEEecccc
Confidence            1111000                                                     0112222 235677777788


Q ss_pred             EEEEECCC-Cce-eeecccccCceeceEEEEECCCCCEEEEeeCCCcEEEEE
Q 021399          170 VRIWDTET-GKL-LKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWD  219 (313)
Q Consensus       170 i~lwd~~~-~~~-~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~dg~i~iwd  219 (313)
                      ..+.|... ..+ ..... .......+.+++++++++.++-|..+|.|.+|-
T Consensus       290 ~q~vd~~~lsNP~~~~~~-v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa  340 (1118)
T KOG1275|consen  290 FQFVDTATLSNPPAGVKM-VNPNGSGISAFDISSNGDALAFGDHEGHVNLWA  340 (1118)
T ss_pred             eeeccccccCCCccceeE-EccCCCcceeEEecCCCceEEEecccCcEeeec
Confidence            88887321 111 11111 112345589999999999999999999999996

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=98.39  E-value=0.0002  Score=62.79  Aligned_cols=187  Identities=16%  Similarity=0.180  Sum_probs=103.0

Q ss_pred             CCEEEEeeCCCCeEEEeCCCCcEEEEecCCCCceE-----EEEECCCCCeEEEeeCCCcEEEEECCCCeEEEEecCCCCe
Q 021399           22 GDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVW-----CCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFNFDSPA   96 (313)
Q Consensus        22 g~~l~s~s~d~~i~iw~~~~~~~~~~~~~H~~~V~-----~~~~~~~~~~l~s~s~D~~v~vWd~~~~~~~~~~~~~~~~   96 (313)
                      +..++.++.|+.+..||.++++.+.+++.......     +....  +..++.+..++.+..+|+.+++.++......+.
T Consensus       145 ~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~~--~~~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~  222 (377)
T TIGR03300       145 NGLVVVRTNDGRLTALDAATGERLWTYSRVTPALTLRGSASPVIA--DGGVLVGFAGGKLVALDLQTGQPLWEQRVALPK  222 (377)
T ss_pred             CCEEEEECCCCeEEEEEcCCCceeeEEccCCCceeecCCCCCEEE--CCEEEEECCCCEEEEEEccCCCEeeeeccccCC
Confidence            44566677788888889888888777654332211     11111  236677788899999999998877654321110


Q ss_pred             ------------eEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEccCCCEEEEe
Q 021399           97 ------------RSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISA  164 (313)
Q Consensus        97 ------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~t~  164 (313)
                                  ... ...++.+.+...+...      ...+.      ..++.+-..+.  ......  ...+..+..+
T Consensus       223 g~~~~~~~~~~~~~p-~~~~~~vy~~~~~g~l------~a~d~------~tG~~~W~~~~--~~~~~p--~~~~~~vyv~  285 (377)
T TIGR03300       223 GRTELERLVDVDGDP-VVDGGQVYAVSYQGRV------AALDL------RSGRVLWKRDA--SSYQGP--AVDDNRLYVT  285 (377)
T ss_pred             CCCchhhhhccCCcc-EEECCEEEEEEcCCEE------EEEEC------CCCcEEEeecc--CCccCc--eEeCCEEEEE
Confidence                        000 0112333333222111      00000      01111111110  000111  1235667778


Q ss_pred             eCCCeEEEEECCCCceeeecccccCceeceEEEEECCCCCEEEEeeCCCcEEEEECCCCcEEEEEec
Q 021399          165 GEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVT  231 (313)
Q Consensus       165 ~~d~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~  231 (313)
                      +.+|.|..+|..+++.+-+......  ....+...  .+..++.++.||.+.++|.++++.+.++..
T Consensus       286 ~~~G~l~~~d~~tG~~~W~~~~~~~--~~~ssp~i--~g~~l~~~~~~G~l~~~d~~tG~~~~~~~~  348 (377)
T TIGR03300       286 DADGVVVALDRRSGSELWKNDELKY--RQLTAPAV--VGGYLVVGDFEGYLHWLSREDGSFVARLKT  348 (377)
T ss_pred             CCCCeEEEEECCCCcEEEccccccC--CccccCEE--ECCEEEEEeCCCEEEEEECCCCCEEEEEEc
Confidence            8899999999998876533321111  11122122  356899999999999999999999887753

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=98.39  E-value=0.00066  Score=55.32  Aligned_cols=218  Identities=19%  Similarity=0.154  Sum_probs=115.8

Q ss_pred             CCCeEEEeCCCCcEEEEecC---CCCceEEEEECCCCCeEEEeeCCCcEEEEECCCCeEEEEecCCCCeeEEEeecCCeE
Q 021399           31 DHTPTVWFADNGERLGTYRG---HNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKL  107 (313)
Q Consensus        31 d~~i~iw~~~~~~~~~~~~~---H~~~V~~~~~~~~~~~l~s~s~D~~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~  107 (313)
                      ++.|..||..+++.+.+..-   ..+.+. ..+ +++..+++++.++.+..||..+++.++......+........++.+
T Consensus         2 ~g~l~~~d~~tG~~~W~~~~~~~~~~~~~-~~~-~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~v   79 (238)
T PF13360_consen    2 DGTLSALDPRTGKELWSYDLGPGIGGPVA-TAV-PDGGRVYVASGDGNLYALDAKTGKVLWRFDLPGPISGAPVVDGGRV   79 (238)
T ss_dssp             TSEEEEEETTTTEEEEEEECSSSCSSEEE-TEE-EETTEEEEEETTSEEEEEETTTSEEEEEEECSSCGGSGEEEETTEE
T ss_pred             CCEEEEEECCCCCEEEEEECCCCCCCccc-eEE-EeCCEEEEEcCCCEEEEEECCCCCEEEEeeccccccceeeeccccc
Confidence            68899999999998887753   223231 122 2455677778999999999999999988776443322223445555


Q ss_pred             EEEECCC-ceecc--ccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEccCCCEEEEeeCCCeEEEEECCCCceeeec
Q 021399          108 AVITTDP-FMELN--SAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKES  184 (313)
Q Consensus       108 ~~~~~~~-~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~t~~~d~~i~lwd~~~~~~~~~~  184 (313)
                      .+...+. ...++  .....|.......           ..............+..++.+..++.|..+|+++++.+-..
T Consensus        80 ~v~~~~~~l~~~d~~tG~~~W~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~  148 (238)
T PF13360_consen   80 YVGTSDGSLYALDAKTGKVLWSIYLTSS-----------PPAGVRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKY  148 (238)
T ss_dssp             EEEETTSEEEEEETTTSCEEEEEEE-SS-----------CTCSTB--SEEEEETTEEEEEETCSEEEEEETTTTEEEEEE
T ss_pred             ccccceeeeEecccCCcceeeeeccccc-----------cccccccccCceEecCEEEEEeccCcEEEEecCCCcEEEEe
Confidence            5554332 11111  1111121100000           00000111112223667888888999999999999876544


Q ss_pred             ccccCce-------eceEEEEECCCCCEEEEeeCCCcEEEEECCCCcEEEEEecCCceeEEEeccCCCEEEEcccccCce
Q 021399          185 DKETGHK-------KTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTERPVNAVTMSPLLDHVVLGGGQDASA  257 (313)
Q Consensus       185 ~~~~~h~-------~~v~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~  257 (313)
                      .......       ..+..-....++ .+..++.++.+.-+|+++++.+-+.. ...... ...+.++.++++. . ...
T Consensus       149 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~g~~~~~d~~tg~~~w~~~-~~~~~~-~~~~~~~~l~~~~-~-~~~  223 (238)
T PF13360_consen  149 PVGEPRGSSPISSFSDINGSPVISDG-RVYVSSGDGRVVAVDLATGEKLWSKP-ISGIYS-LPSVDGGTLYVTS-S-DGR  223 (238)
T ss_dssp             ESSTT-SS--EEEETTEEEEEECCTT-EEEEECCTSSEEEEETTTTEEEEEEC-SS-ECE-CEECCCTEEEEEE-T-TTE
T ss_pred             ecCCCCCCcceeeecccccceEEECC-EEEEEcCCCeEEEEECCCCCEEEEec-CCCccC-CceeeCCEEEEEe-C-CCE
Confidence            3221111       112222233344 67777777754334999998654322 222222 1345566666654 2 233


Q ss_pred             eEeeccCCC
Q 021399          258 VTTTDHRAG  266 (313)
Q Consensus       258 ~~~~~~~~~  266 (313)
                      ++.+|.+++
T Consensus       224 l~~~d~~tG  232 (238)
T PF13360_consen  224 LYALDLKTG  232 (238)
T ss_dssp             EEEEETTTT
T ss_pred             EEEEECCCC
Confidence            444444443

...

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=98.39  E-value=0.00016  Score=59.88  Aligned_cols=183  Identities=20%  Similarity=0.254  Sum_probs=108.3

Q ss_pred             EEEEccCCCEEEEeeC-----CCCeEEEeCC-CCcEEEEecCCCCceEEEEECCCCCeEEEe--eC-----CCcEEE---
Q 021399           15 YLKYNKDGDLLFSCAK-----DHTPTVWFAD-NGERLGTYRGHNGAVWCCDVSRDSMTLITG--SA-----DQTAKL---   78 (313)
Q Consensus        15 ~~~fs~~g~~l~s~s~-----d~~i~iw~~~-~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~--s~-----D~~v~v---   78 (313)
                      .-.||+||++|++.-.     .|.|-|||.. ..+.+.++..|.=.=..+.+.|||+.|+.+  |-     .|..|+   
T Consensus        55 Hg~fs~dG~~LytTEnd~~~g~G~IgVyd~~~~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~  134 (305)
T PF07433_consen   55 HGVFSPDGRLLYTTENDYETGRGVIGVYDAARGYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLD  134 (305)
T ss_pred             CEEEcCCCCEEEEeccccCCCcEEEEEEECcCCcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChh
Confidence            3689999999999755     4789999999 667788888765444456788999665553  21     134443   


Q ss_pred             --------EECCCCeEEEEecC-----CCCeeEEEeecCCeEEEEECCCc--eeccccceeeeeeeCCCCCCCceEEEec
Q 021399           79 --------WNVETGAQLFTFNF-----DSPARSVDFAVGDKLAVITTDPF--MELNSAIHVKRIARDPADQGGESVLILK  143 (313)
Q Consensus        79 --------Wd~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~  143 (313)
                              -|..+++.+.....     ..++..+.+..++.++......-  ......+...     .   .+.....+.
T Consensus       135 tM~psL~~ld~~sG~ll~q~~Lp~~~~~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~-----~---~g~~~~~~~  206 (305)
T PF07433_consen  135 TMQPSLVYLDARSGALLEQVELPPDLHQLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALH-----R---RGGALRLLP  206 (305)
T ss_pred             hcCCceEEEecCCCceeeeeecCccccccceeeEEecCCCcEEEEEecCCCCCccCCeEEEE-----c---CCCcceecc
Confidence                    23344444433222     22455555666655554432100  0000000000     0   011111111


Q ss_pred             -------CCCCceEEEEEccCCCEE-EEeeCCCeEEEEECCCCceeeecccccCceeceEEEEECCCCCEEEEeeC
Q 021399          144 -------GPQGRINRAVWGPLNRTI-ISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSL  211 (313)
Q Consensus       144 -------~~~~~i~~~~~~~~~~~i-~t~~~d~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~  211 (313)
                             .-.+.+-++++++++..+ +|+=..+.+.+||..++..+....     -..++.++..+++ +++|.+.
T Consensus       207 ~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~~tg~~~~~~~-----l~D~cGva~~~~~-f~~ssG~  276 (305)
T PF07433_consen  207 APEEQWRRLNGYIGSIAADRDGRLIAVTSPRGGRVAVWDAATGRLLGSVP-----LPDACGVAPTDDG-FLVSSGQ  276 (305)
T ss_pred             CChHHHHhhCCceEEEEEeCCCCEEEEECCCCCEEEEEECCCCCEeeccc-----cCceeeeeecCCc-eEEeCCC
Confidence                   223568899999998877 555578899999999998776542     3467888887777 6666654

>KOG1912 consensus WD40 repeat protein [General function prediction only]

Probab=98.38  E-value=4.1e-05  Score=69.47  Aligned_cols=211  Identities=12%  Similarity=0.098  Sum_probs=135.8

Q ss_pred             ccccccccceeEEEEccC------------CCEEEEeeCCCCeEEEeCCCCcEEEEecCCCCceEEEEECC---CC-CeE
Q 021399            4 ILMKGHERPLTYLKYNKD------------GDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSR---DS-MTL   67 (313)
Q Consensus         4 ~~l~~h~~~v~~~~fs~~------------g~~l~s~s~d~~i~iw~~~~~~~~~~~~~H~~~V~~~~~~~---~~-~~l   67 (313)
                      +.+.-|...|+.++|.|-            -..|+++.-.|.|.+||+..+..+..+..|.++|..++|-+   +. ..|
T Consensus        49 qsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d~~~~s~~~~l~~~~~~~qdl~W~~~rd~Srd~L  128 (1062)
T KOG1912|consen   49 QSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVDFVLASVINWLSHSNDSVQDLCWVPARDDSRDVL  128 (1062)
T ss_pred             hccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEEEehhhhhhhhhcCCCcchhheeeeeccCcchhee
Confidence            356668888999999764            23567777789999999999999989999999999998854   33 356


Q ss_pred             EEeeCCCcEEEEECCCCeEEEEecCCCCee-EEEeec--CCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecC
Q 021399           68 ITGSADQTAKLWNVETGAQLFTFNFDSPAR-SVDFAV--GDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKG  144 (313)
Q Consensus        68 ~s~s~D~~v~vWd~~~~~~~~~~~~~~~~~-~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  144 (313)
                      +.-..-.++-+|+..+|+..+.......+. ++.+.|  ...+++.+..++......     +...+.+..++....-..
T Consensus       129 laIh~ss~lvLwntdtG~k~Wk~~ys~~iLs~f~~DPfd~rh~~~l~s~g~vl~~~~-----l~~sep~~pgk~~qI~sd  203 (1062)
T KOG1912|consen  129 LAIHGSSTLVLWNTDTGEKFWKYDYSHEILSCFRVDPFDSRHFCVLGSKGFVLSCKD-----LGLSEPDVPGKEFQITSD  203 (1062)
T ss_pred             EEecCCcEEEEEEccCCceeeccccCCcceeeeeeCCCCcceEEEEccCceEEEEec-----cCCCCCCCCceeEEEecC
Confidence            666677899999999999988887654443 355555  344555444333211110     011111111111111111


Q ss_pred             CCC--------------------c-----eEEEEEccCCCEEEEeeCCCeEEEEECCCCceeeecccccCceeceEEEEE
Q 021399          145 PQG--------------------R-----INRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAK  199 (313)
Q Consensus       145 ~~~--------------------~-----i~~~~~~~~~~~i~t~~~d~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~  199 (313)
                      |..                    .     ....+|+|..+.++....-..+.++|++-..++..+..   .++.+.-+.+
T Consensus       204 ~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~~rn~lfi~~prellv~dle~~~~l~vvpi---er~~akfv~v  280 (1062)
T KOG1912|consen  204 HSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPHWRNILFITFPRELLVFDLEYECCLAVVPI---ERGGAKFVDV  280 (1062)
T ss_pred             ccchhhhhhhhhccccccCCCcchhHHHHHHhhhcChhhhceEEEEeccceEEEcchhhceeEEEEe---ccCCcceeEe
Confidence            110                    0     11355788877777777788899999988777766543   2333444444


Q ss_pred             CC--CCCEEEEeeCCCcEEEEECCC
Q 021399          200 AA--DGSHFLTGSLDKSAKLWDART  222 (313)
Q Consensus       200 s~--~~~~l~s~s~dg~i~iwd~~~  222 (313)
                      -|  +...|.+.-.||.+.+|-.+.
T Consensus       281 lP~~~rd~LfclH~nG~ltirvrk~  305 (1062)
T KOG1912|consen  281 LPDPRRDALFCLHSNGRLTIRVRKE  305 (1062)
T ss_pred             ccCCCcceEEEEecCCeEEEEEeec
Confidence            44  455699999999999996554

>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]

Probab=98.31  E-value=7e-05  Score=59.76  Aligned_cols=156  Identities=11%  Similarity=0.022  Sum_probs=99.7

Q ss_pred             cccc--eeEEEEccCCCEEEEeeCCCCeEEEeCCCCcE--EE-EecCCCCceEEEEECCCCCeEEEeeCCCcEEEEECCC
Q 021399            9 HERP--LTYLKYNKDGDLLFSCAKDHTPTVWFADNGER--LG-TYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVET   83 (313)
Q Consensus         9 h~~~--v~~~~fs~~g~~l~s~s~d~~i~iw~~~~~~~--~~-~~~~H~~~V~~~~~~~~~~~l~s~s~D~~v~vWd~~~   83 (313)
                      |...  +..+.+++|++++++.+....|-.|.+++...  +. ....-++.=++.+|+..+..||++.+||++.|||++.
T Consensus       155 h~~~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~  234 (344)
T KOG4532|consen  155 HNQNLTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSENDLQFAVVFQDGTCAIYDVRN  234 (344)
T ss_pred             eccccceeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeeccCcceEEEEecCCcEEEEEecc
Confidence            4443  67899999999999999989999997775432  23 2333445567889999999999999999999999986


Q ss_pred             CeEEEEecCCCCeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEccCC--CEE
Q 021399           84 GAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLN--RTI  161 (313)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--~~i  161 (313)
                      .......                                               ....-..|.+.+..+.|++.|  ..+
T Consensus       235 ~~tpm~~-----------------------------------------------~sstrp~hnGa~R~c~Fsl~g~lDLL  267 (344)
T KOG4532|consen  235 MATPMAE-----------------------------------------------ISSTRPHHNGAFRVCRFSLYGLLDLL  267 (344)
T ss_pred             cccchhh-----------------------------------------------hcccCCCCCCceEEEEecCCCcceEE
Confidence            4321000                                               000112366777777777654  245


Q ss_pred             EEeeCCCeEEEEECCCCceeeeccccc----Cce-eceEEEEECCCCCEEEEeeC
Q 021399          162 ISAGEDAIVRIWDTETGKLLKESDKET----GHK-KTITSLAKAADGSHFLTGSL  211 (313)
Q Consensus       162 ~t~~~d~~i~lwd~~~~~~~~~~~~~~----~h~-~~v~~~~~s~~~~~l~s~s~  211 (313)
                      +..-.-+.+++.|+++.+..+.+....    .|. ..+..-.|+.++..+.+.+.
T Consensus       268 f~sEhfs~~hv~D~R~~~~~q~I~i~~d~~~~~~tq~ifgt~f~~~n~s~~v~~e  322 (344)
T KOG4532|consen  268 FISEHFSRVHVVDTRNYVNHQVIVIPDDVERKHNTQHIFGTNFNNENESNDVKNE  322 (344)
T ss_pred             EEecCcceEEEEEcccCceeeEEecCccccccccccccccccccCCCcccccccc
Confidence            555566889999998876544332111    121 23555555555554444443

>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=98.29  E-value=1.9e-06  Score=77.41  Aligned_cols=172  Identities=17%  Similarity=0.310  Sum_probs=96.2

Q ss_pred             cccccccceeEEEEccCC-CEEEEeeCCCCeEEEeCCCC-----------------------------------------
Q 021399            5 LMKGHERPLTYLKYNKDG-DLLFSCAKDHTPTVWFADNG-----------------------------------------   42 (313)
Q Consensus         5 ~l~~h~~~v~~~~fs~~g-~~l~s~s~d~~i~iw~~~~~-----------------------------------------   42 (313)
                      +|.||...|+.+.|+|.- ..|++++.|..+..||....                                         
T Consensus       109 ~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s~asqVkwnyk~p~vlasshg~~i~vwd~r  188 (1081)
T KOG0309|consen  109 VLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSWRSAASQVKWNYKDPNVLASSHGNDIFVWDLR  188 (1081)
T ss_pred             EEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeeecccccCceeeecccCcchhhhccCCceEEEecc
Confidence            577788788877777654 47777777777777765532                                         


Q ss_pred             ---cEEEEecCCCCceEEEEECCC-CCeEEEeeCCCcEEEEECCCCeE--EEEecCCCCeeEEEeec-CCeEEEEECCCc
Q 021399           43 ---ERLGTYRGHNGAVWCCDVSRD-SMTLITGSADQTAKLWNVETGAQ--LFTFNFDSPARSVDFAV-GDKLAVITTDPF  115 (313)
Q Consensus        43 ---~~~~~~~~H~~~V~~~~~~~~-~~~l~s~s~D~~v~vWd~~~~~~--~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~  115 (313)
                         .++..+++|...|..++|+.- -..+++++.|++|+.||.+....  ........++--..+.| ++..+.....+.
T Consensus       189 ~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e~~~~vtt~~piw~~r~~Pfg~g~~~mp~~G~  268 (1081)
T KOG0309|consen  189 KGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTESKRTVTTNFPIWRGRYLPFGEGYCIMPMVGG  268 (1081)
T ss_pred             CCCcceEEecccceeeehHHHhhhhhhhhcccCCCCceeeecccccccccceeccccCcceeccccccCceeEeccccCC
Confidence               234455677777777777642 23688999999999999864321  12222222222222222 221111110000


Q ss_pred             eeccccc-eeeeeeeCCCCCCCceEEEecCCCCceEEEEEccC----------CCEEEEeeCCCeEEEEECCC
Q 021399          116 MELNSAI-HVKRIARDPADQGGESVLILKGPQGRINRAVWGPL----------NRTIISAGEDAIVRIWDTET  177 (313)
Q Consensus       116 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~----------~~~i~t~~~d~~i~lwd~~~  177 (313)
                      ..+.... ...+..+ ..-....++..+.||...|....|-..          +-.++|=+.|..+|+|.+.+
T Consensus       269 n~v~~~~c~n~d~e~-n~~~~~~pVh~F~GH~D~V~eFlWR~r~e~~~d~d~rdfQLVTWSkD~~lrlWpI~~  340 (1081)
T KOG0309|consen  269 NMVPQLRCENSDLEW-NVFDLNTPVHTFVGHDDVVLEFLWRKRKECDGDYDSRDFQLVTWSKDQTLRLWPIDS  340 (1081)
T ss_pred             eeeeeccccchhhhh-ccccCCcceeeecCcchHHHHHhhhhcccccCCCCccceeEEEeecCCceEeeeccH
Confidence            0000000 0000000 001134678889999988776666422          23689999999999998754

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.29  E-value=0.00038  Score=64.15  Aligned_cols=203  Identities=13%  Similarity=0.089  Sum_probs=118.5

Q ss_pred             EEccCCCEEEEeeCCCCeEEEeCCCCc-EEEEecCCCCc-eEEEEECCCCCeEEEeeCCC-----cEEEEECCCCeEEEE
Q 021399           17 KYNKDGDLLFSCAKDHTPTVWFADNGE-RLGTYRGHNGA-VWCCDVSRDSMTLITGSADQ-----TAKLWNVETGAQLFT   89 (313)
Q Consensus        17 ~fs~~g~~l~s~s~d~~i~iw~~~~~~-~~~~~~~H~~~-V~~~~~~~~~~~l~s~s~D~-----~v~vWd~~~~~~~~~   89 (313)
                      +|++.+..++-|+.||.|.+.+  .+- .++.|++|... |..+..-.+.++|++-+.|+     .++|||++..+.   
T Consensus        30 c~~s~~~~vvigt~~G~V~~Ln--~s~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~---  104 (933)
T KOG2114|consen   30 CCSSSTGSVVIGTADGRVVILN--SSFQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDK---  104 (933)
T ss_pred             EEcCCCceEEEeeccccEEEec--ccceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCC---
Confidence            3588899999999999988775  333 34788888887 55554443335788877765     489999864320   


Q ss_pred             ecCCCCeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEccCCCEEEEeeCCCe
Q 021399           90 FNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAI  169 (313)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~t~~~d~~  169 (313)
                         +.++..+.                       ..++....          ......++..++.+.+-..+|+|=.+|.
T Consensus       105 ---n~sP~c~~-----------------------~~ri~~~~----------np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~  148 (933)
T KOG2114|consen  105 ---NNSPQCLY-----------------------EHRIFTIK----------NPTNPSPASSLAVSEDLKTIVCGFTNGL  148 (933)
T ss_pred             ---CCCcceee-----------------------eeeeeccC----------CCCCCCcceEEEEEccccEEEEEecCcE
Confidence               00000000                       00000000          0001235566677777778999999999


Q ss_pred             EEEEE--C-CCCceeeecccccCceeceEEEEECCCCCEEEEeeCCCcEEEEECCCCcEEEE-Ee-cCCceeEEEeccCC
Q 021399          170 VRIWD--T-ETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKT-YV-TERPVNAVTMSPLL  244 (313)
Q Consensus       170 i~lwd--~-~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~-~~-~~~~~~~~~~~p~~  244 (313)
                      |..+.  + +... . +......-+..|+.+++..++..++-...-..|.+|.+....+... +. +..+++|.++++..
T Consensus       149 V~~~~GDi~RDrg-s-r~~~~~~~~~pITgL~~~~d~~s~lFv~Tt~~V~~y~l~gr~p~~~~ld~~G~~lnCss~~~~t  226 (933)
T KOG2114|consen  149 VICYKGDILRDRG-S-RQDYSHRGKEPITGLALRSDGKSVLFVATTEQVMLYSLSGRTPSLKVLDNNGISLNCSSFSDGT  226 (933)
T ss_pred             EEEEcCcchhccc-c-ceeeeccCCCCceeeEEecCCceeEEEEecceeEEEEecCCCcceeeeccCCccceeeecCCCC
Confidence            98874  1 1111 1 1122223467899999998888722222235688998874332333 32 35578999998877


Q ss_pred             CEEEEcccccCceeEeecc
Q 021399          245 DHVVLGGGQDASAVTTTDH  263 (313)
Q Consensus       245 ~~~~~~~~~~~~~~~~~~~  263 (313)
                      .+++.++ +....++..|.
T Consensus       227 ~qfIca~-~e~l~fY~sd~  244 (933)
T KOG2114|consen  227 YQFICAG-SEFLYFYDSDG  244 (933)
T ss_pred             ccEEEec-CceEEEEcCCC
Confidence            7655554 33333444443

>KOG4714 consensus Nucleoporin [Nuclear structure]

Probab=98.19  E-value=1.2e-05  Score=63.69  Aligned_cols=72  Identities=21%  Similarity=0.315  Sum_probs=60.0

Q ss_pred             ceeEEEEccCC-CEEEEeeCCCCeEEEeCCCCc-EEEEecCCCCceEEEEECCC-CCeEEEeeCCCcEEEEECCC
Q 021399           12 PLTYLKYNKDG-DLLFSCAKDHTPTVWFADNGE-RLGTYRGHNGAVWCCDVSRD-SMTLITGSADQTAKLWNVET   83 (313)
Q Consensus        12 ~v~~~~fs~~g-~~l~s~s~d~~i~iw~~~~~~-~~~~~~~H~~~V~~~~~~~~-~~~l~s~s~D~~v~vWd~~~   83 (313)
                      .|.+++-+|.- +.+++|+.||.+-+||..... ....+++|+.+++-+-|+|. ++.|++++.||.+--||..+
T Consensus       181 ~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wdas~  255 (319)
T KOG4714|consen  181 AVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDAST  255 (319)
T ss_pred             cchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEecCCCcEEEEcCCC
Confidence            48888888865 466677889999999988774 34567899999999999985 56899999999999999765

>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats

Probab=98.17  E-value=1.1e-05  Score=71.12  Aligned_cols=74  Identities=11%  Similarity=0.066  Sum_probs=62.0

Q ss_pred             cccceeEEEEccCCCEEEEeeCCCCeEEEeCCCCcEEEEecCCCCceEEEEECCCCCeEEEeeCCCcEEEEECCCC
Q 021399            9 HERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETG   84 (313)
Q Consensus         9 h~~~v~~~~fs~~g~~l~s~s~d~~i~iw~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~v~vWd~~~~   84 (313)
                      ....|.|++++|+.+.|+.|..||.|.+||...+...  +.-+.-..+.++|+|+|..++.|+.-|.+++||+.-+
T Consensus       258 L~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t~--~~ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~ALs  331 (545)
T PF11768_consen  258 LPSQVICCARSPSEDKLVLGCEDGSIILYDTTRGVTL--LAKAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMALS  331 (545)
T ss_pred             cCCcceEEecCcccceEEEEecCCeEEEEEcCCCeee--eeeecccceEEEEcCCCcEEEEEcCCceEEEEEeecC
Confidence            4567899999999999999999999999998776443  2233445678999999999999999999999997643

>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats

Probab=98.15  E-value=0.00014  Score=64.26  Aligned_cols=74  Identities=20%  Similarity=0.246  Sum_probs=61.2

Q ss_pred             CCCceEEEEEccCCCEEEEeeCCCeEEEEECCCCceeeecccccCceeceEEEEECCCCCEEEEeeCCCcEEEEECCCC
Q 021399          145 PQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTL  223 (313)
Q Consensus       145 ~~~~i~~~~~~~~~~~i~t~~~d~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~dg~i~iwd~~~~  223 (313)
                      ..+.+.+++++|++..++.|..||.|.+||...+.....     ...-..+.++|+|+|..+++|+.-|.+.+||+.-.
T Consensus       258 L~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t~~~-----ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~ALs  331 (545)
T PF11768_consen  258 LPSQVICCARSPSEDKLVLGCEDGSIILYDTTRGVTLLA-----KAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMALS  331 (545)
T ss_pred             cCCcceEEecCcccceEEEEecCCeEEEEEcCCCeeeee-----eecccceEEEEcCCCcEEEEEcCCceEEEEEeecC
Confidence            356788999999999999999999999999876543221     13445788999999999999999999999998643

>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=98.13  E-value=5.2e-05  Score=61.72  Aligned_cols=135  Identities=19%  Similarity=0.265  Sum_probs=82.4

Q ss_pred             CCCCceEEEEECCCCCeEEEeeCCCcEEEEECCCCeEEEEecCCCCeeEEEeecCCeEEEEECCCceeccccceeeeeee
Q 021399           50 GHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIAR  129 (313)
Q Consensus        50 ~H~~~V~~~~~~~~~~~l~s~s~D~~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  129 (313)
                      +|..-+.+++|+.|.+.++| +.|-.|-+|+++-....+.        .+++.|.                         
T Consensus       170 aH~yhiNSiS~NsD~et~lS-aDdLrINLWnl~i~D~sFn--------IVDiKP~-------------------------  215 (460)
T COG5170         170 AHPYHINSISFNSDKETLLS-ADDLRINLWNLEIIDGSFN--------IVDIKPH-------------------------  215 (460)
T ss_pred             cceeEeeeeeecCchheeee-ccceeeeeccccccCCceE--------EEeccCc-------------------------
Confidence            56677888999988888777 4577888998764221110        0000000                         


Q ss_pred             CCCCCCCceEEEecCCCCceEEEEEccCC-CEEEEeeCCCeEEEEECCCCceeee----ccc---c------cCceeceE
Q 021399          130 DPADQGGESVLILKGPQGRINRAVWGPLN-RTIISAGEDAIVRIWDTETGKLLKE----SDK---E------TGHKKTIT  195 (313)
Q Consensus       130 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~i~t~~~d~~i~lwd~~~~~~~~~----~~~---~------~~h~~~v~  195 (313)
                                 .++.-...|++..|+|.. ..+.-.+..|.|+|.|+++..+...    +..   .      .+-...|.
T Consensus       216 -----------nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn~~klfe~~~D~v~~~ff~eivsSIS  284 (460)
T COG5170         216 -----------NMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDNSKKLFELTIDGVDVDFFEEIVSSIS  284 (460)
T ss_pred             -----------cHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhccCchhhhhhccCcccchhHHHHhhhhc
Confidence                       000001235566677764 3455667789999999985432211    000   0      11224577


Q ss_pred             EEEECCCCCEEEEeeCCCcEEEEECCC-CcEEEEEe
Q 021399          196 SLAKAADGSHFLTGSLDKSAKLWDART-LELIKTYV  230 (313)
Q Consensus       196 ~~~~s~~~~~l~s~s~dg~i~iwd~~~-~~~~~~~~  230 (313)
                      .+.|+++|.+|++-+. -++++||.+. ..|+.++.
T Consensus       285 D~kFs~ngryIlsRdy-ltvkiwDvnm~k~pikTi~  319 (460)
T COG5170         285 DFKFSDNGRYILSRDY-LTVKIWDVNMAKNPIKTIP  319 (460)
T ss_pred             ceEEcCCCcEEEEecc-ceEEEEecccccCCceeec
Confidence            8899999999987765 5799999987 46777773

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=98.12  E-value=0.0014  Score=53.42  Aligned_cols=192  Identities=21%  Similarity=0.242  Sum_probs=102.8

Q ss_pred             cCCCEEEEeeCCCCeEEEeCCCCcEEEEecCCCCceEEEEECCCCCeEEEeeCCCcEEEEECCCCeEEEEe-cCCCC---
Q 021399           20 KDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTF-NFDSP---   95 (313)
Q Consensus        20 ~~g~~l~s~s~d~~i~iw~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~v~vWd~~~~~~~~~~-~~~~~---   95 (313)
                      +++.+++.++.++.+..||..+|+.+.++.. .+.+...-.. ++..++.+..|+.+..+|..+++.++.. ....+   
T Consensus        34 ~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~-~~~~~~~~~~-~~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~  111 (238)
T PF13360_consen   34 PDGGRVYVASGDGNLYALDAKTGKVLWRFDL-PGPISGAPVV-DGGRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAG  111 (238)
T ss_dssp             EETTEEEEEETTSEEEEEETTTSEEEEEEEC-SSCGGSGEEE-ETTEEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCS
T ss_pred             EeCCEEEEEcCCCEEEEEECCCCCEEEEeec-cccccceeee-cccccccccceeeeEecccCCcceeeeeccccccccc
Confidence            3677888889999999999999999887765 2222111111 2345666678889999999999998874 32211   


Q ss_pred             ---eeEEEeecCCeEEEEECCC-ceeccc--cceeeeeeeCCCCCCCceEEEecCCCCceEEEEEccCCCEEEEeeCCCe
Q 021399           96 ---ARSVDFAVGDKLAVITTDP-FMELNS--AIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAI  169 (313)
Q Consensus        96 ---~~~~~~~~~~~~~~~~~~~-~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~t~~~d~~  169 (313)
                         .....+. ++.+++...+. ...++.  ....+..... ..........+    ..+..-.....+ .+..++.++.
T Consensus       112 ~~~~~~~~~~-~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~-~~~~~~~~~~~----~~~~~~~~~~~~-~v~~~~~~g~  184 (238)
T PF13360_consen  112 VRSSSSPAVD-GDRLYVGTSSGKLVALDPKTGKLLWKYPVG-EPRGSSPISSF----SDINGSPVISDG-RVYVSSGDGR  184 (238)
T ss_dssp             TB--SEEEEE-TTEEEEEETCSEEEEEETTTTEEEEEEESS-TT-SS--EEEE----TTEEEEEECCTT-EEEEECCTSS
T ss_pred             cccccCceEe-cCEEEEEeccCcEEEEecCCCcEEEEeecC-CCCCCcceeee----cccccceEEECC-EEEEEcCCCe
Confidence               1111111 44444444222 111111  1111111110 00000000000    011122222234 5666666664


Q ss_pred             -EEEEECCCCceeeecccccCceeceEEEEECCCCCEEEEeeCCCcEEEEECCCCcEEE
Q 021399          170 -VRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIK  227 (313)
Q Consensus       170 -i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~  227 (313)
                       +.+ |..+++.+-...  . +  ....+ ...++..++.++.++.+..||+++++.+-
T Consensus       185 ~~~~-d~~tg~~~w~~~--~-~--~~~~~-~~~~~~~l~~~~~~~~l~~~d~~tG~~~W  236 (238)
T PF13360_consen  185 VVAV-DLATGEKLWSKP--I-S--GIYSL-PSVDGGTLYVTSSDGRLYALDLKTGKVVW  236 (238)
T ss_dssp             EEEE-ETTTTEEEEEEC--S-S---ECEC-EECCCTEEEEEETTTEEEEEETTTTEEEE
T ss_pred             EEEE-ECCCCCEEEEec--C-C--CccCC-ceeeCCEEEEEeCCCEEEEEECCCCCEEe
Confidence             556 999987442111  1 1  12221 34667788888899999999999998764

...

>smart00320 WD40 WD40 repeats

Probab=98.09  E-value=1.2e-05  Score=44.35  Aligned_cols=38  Identities=42%  Similarity=0.601  Sum_probs=34.2

Q ss_pred             cEEEEecCCCCceEEEEECCCCCeEEEeeCCCcEEEEE
Q 021399           43 ERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWN   80 (313)
Q Consensus        43 ~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~v~vWd   80 (313)
                      +....+.+|...|.++.|+++++.+++++.|+.+++|+
T Consensus         3 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~   40 (40)
T smart00320        3 ELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD   40 (40)
T ss_pred             EEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence            45667788999999999999989999999999999996

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.

>KOG4714 consensus Nucleoporin [Nuclear structure]

Probab=98.08  E-value=3.2e-05  Score=61.35  Aligned_cols=72  Identities=25%  Similarity=0.351  Sum_probs=56.3

Q ss_pred             eEEEEEccCCC-EEEEeeCCCeEEEEECCCCceeeecccccCceeceEEEEECC-CCCEEEEeeCCCcEEEEECCC
Q 021399          149 INRAVWGPLNR-TIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAA-DGSHFLTGSLDKSAKLWDART  222 (313)
Q Consensus       149 i~~~~~~~~~~-~i~t~~~d~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~-~~~~l~s~s~dg~i~iwd~~~  222 (313)
                      +..++-+|..+ .+++|++||.+-|||.+.....  ......|+..+..+-|+| ++..|++++.||.+..||..+
T Consensus       182 v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p--~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wdas~  255 (319)
T KOG4714|consen  182 VTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMP--VSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDAST  255 (319)
T ss_pred             chhhhCCcccccEEEEecCCCeEEEEEcccccch--HHHHHHhhhhhhheeccCCCchheeEecCCCcEEEEcCCC
Confidence            66666677654 5677889999999999876432  122346999999999987 577899999999999999874

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=98.07  E-value=0.0046  Score=51.42  Aligned_cols=232  Identities=13%  Similarity=0.061  Sum_probs=131.1

Q ss_pred             EEEEccC-CCEEEEeeCC-CCeEEEeCCCCcEEEEecCCCCceE--EEEECCCCCeEEEe-----eCCCcEEEEECC-CC
Q 021399           15 YLKYNKD-GDLLFSCAKD-HTPTVWFADNGERLGTYRGHNGAVW--CCDVSRDSMTLITG-----SADQTAKLWNVE-TG   84 (313)
Q Consensus        15 ~~~fs~~-g~~l~s~s~d-~~i~iw~~~~~~~~~~~~~H~~~V~--~~~~~~~~~~l~s~-----s~D~~v~vWd~~-~~   84 (313)
                      .++.+|+ +..++-+--- ....+||..+++....+..-.+.-+  -..|++||++|++.     ...|.|-|||.. +-
T Consensus         9 ~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd~~~~~   88 (305)
T PF07433_consen    9 GVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSPDGRLLYTTENDYETGRGVIGVYDAARGY   88 (305)
T ss_pred             ceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcCCCCEEEEeccccCCCcEEEEEEECcCCc
Confidence            4667884 4445545443 4467889999988877654443332  25799999998884     345889999998 33


Q ss_pred             eEEEEec-CCCCeeEEEeecCCeEEEEECCCce--------eccccceeeeeeeCCCCCCCceEEE--e--cCCCCceEE
Q 021399           85 AQLFTFN-FDSPARSVDFAVGDKLAVITTDPFM--------ELNSAIHVKRIARDPADQGGESVLI--L--KGPQGRINR  151 (313)
Q Consensus        85 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~--~--~~~~~~i~~  151 (313)
                      +.+-.+. +.-..+.+.+.++++.+++.+....        +++....--.+.+ ....+++.+..  +  ..|+..|.-
T Consensus        89 ~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~-ld~~sG~ll~q~~Lp~~~~~lSiRH  167 (305)
T PF07433_consen   89 RRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVY-LDARSGALLEQVELPPDLHQLSIRH  167 (305)
T ss_pred             EEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEE-EecCCCceeeeeecCccccccceee
Confidence            4444443 3345667777887744444332211        1111000000110 00122333332  3  346677888


Q ss_pred             EEEccCCCEEEEeeCCCe-------EEEEECCCCceeeeccc----ccCceeceEEEEECCCCCEEEE-eeCCCcEEEEE
Q 021399          152 AVWGPLNRTIISAGEDAI-------VRIWDTETGKLLKESDK----ETGHKKTITSLAKAADGSHFLT-GSLDKSAKLWD  219 (313)
Q Consensus       152 ~~~~~~~~~i~t~~~d~~-------i~lwd~~~~~~~~~~~~----~~~h~~~v~~~~~s~~~~~l~s-~s~dg~i~iwd  219 (313)
                      +++.++|..++..-..+.       |-+++...  .+..+..    ...-...+-++++++++..++. +=.-+.+.+||
T Consensus       168 La~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g~--~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d  245 (305)
T PF07433_consen  168 LAVDGDGTVAFAMQYQGDPGDAPPLVALHRRGG--ALRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPRGGRVAVWD  245 (305)
T ss_pred             EEecCCCcEEEEEecCCCCCccCCeEEEEcCCC--cceeccCChHHHHhhCCceEEEEEeCCCCEEEEECCCCCEEEEEE
Confidence            888888775554433332       44444332  1111111    0123467899999999987754 44688899999


Q ss_pred             CCCCcEEEEEecCCceeEEEeccCCCEEEEccc
Q 021399          220 ARTLELIKTYVTERPVNAVTMSPLLDHVVLGGG  252 (313)
Q Consensus       220 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~  252 (313)
                      .++++.+...... .+..++-.+.+  ++++.|
T Consensus       246 ~~tg~~~~~~~l~-D~cGva~~~~~--f~~ssG  275 (305)
T PF07433_consen  246 AATGRLLGSVPLP-DACGVAPTDDG--FLVSSG  275 (305)
T ss_pred             CCCCCEeeccccC-ceeeeeecCCc--eEEeCC
Confidence            9999998765432 34555544444  444444

>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=98.07  E-value=6.1e-05  Score=64.24  Aligned_cols=222  Identities=18%  Similarity=0.130  Sum_probs=126.6

Q ss_pred             ccccccceeEEEEccCCCEEEEeeC-CCCeEEEeCCCCcEEEEecC--CCCceEEEEECCCC----CeEEEeeCCCcEEE
Q 021399            6 MKGHERPLTYLKYNKDGDLLFSCAK-DHTPTVWFADNGERLGTYRG--HNGAVWCCDVSRDS----MTLITGSADQTAKL   78 (313)
Q Consensus         6 l~~h~~~v~~~~fs~~g~~l~s~s~-d~~i~iw~~~~~~~~~~~~~--H~~~V~~~~~~~~~----~~l~s~s~D~~v~v   78 (313)
                      ++.|...+.+++.+-+|-++.|.+. |+.+|++|+++-..+.-++-  -.+.+..  +...|    .+.++.-.++.+.+
T Consensus        49 FraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn~DminmiKL~~lPg~a~w--v~skGd~~s~IAVs~~~sg~i~V  126 (558)
T KOG0882|consen   49 FRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVENFDMINMIKLVDLPGFAEW--VTSKGDKISLIAVSLFKSGKIFV  126 (558)
T ss_pred             hHHHHHHHHhhhccccceeEeeccCcccceeEEEeeccchhhhcccccCCCceEE--ecCCCCeeeeEEeecccCCCcEE
Confidence            4567777888888999999999777 99999999887655432221  1222221  11122    22333346788999


Q ss_pred             EECCCCeE-E--EEecCCCCeeEEEeecC-CeEEEEECCCceeccccceeeeeeeC---CCCCCCceEEEecCCCCceEE
Q 021399           79 WNVETGAQ-L--FTFNFDSPARSVDFAVG-DKLAVITTDPFMELNSAIHVKRIARD---PADQGGESVLILKGPQGRINR  151 (313)
Q Consensus        79 Wd~~~~~~-~--~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~i~~  151 (313)
                      +|-....+ .  ....+..++..+.+.+- +..+.....+....+.........+.   .......-+..+.-......+
T Consensus       127 vD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts  206 (558)
T KOG0882|consen  127 VDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDSAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTS  206 (558)
T ss_pred             ECCcCCcCccceecccccCceEEEEeeccccceeeccccceeEeecCCCcccCccccccccccccchhhcccccccCccc
Confidence            98755432 1  12223456665555542 22221111111111111000000000   000000001111112345578


Q ss_pred             EEEccCCCEEEEeeCCCeEEEEECCCCceeeeccccc-----------------------------Ccee-ceEEEEECC
Q 021399          152 AVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKET-----------------------------GHKK-TITSLAKAA  201 (313)
Q Consensus       152 ~~~~~~~~~i~t~~~d~~i~lwd~~~~~~~~~~~~~~-----------------------------~h~~-~v~~~~~s~  201 (313)
                      +.++|.+..+.+-+.|.+|++++.+++++++.+....                             -|.. .-+.+.|..
T Consensus       207 ~Efsp~g~qistl~~DrkVR~F~~KtGklvqeiDE~~t~~~~q~ks~y~l~~VelgRRmaverelek~~~~~~~~~~fde  286 (558)
T KOG0882|consen  207 FEFSPDGAQISTLNPDRKVRGFVFKTGKLVQEIDEVLTDAQYQPKSPYGLMHVELGRRMAVERELEKHGSTVGTNAVFDE  286 (558)
T ss_pred             eEEccccCcccccCcccEEEEEEeccchhhhhhhccchhhhhccccccccceeehhhhhhHHhhHhhhcCcccceeEEcC
Confidence            8999999999999999999999999998777554211                             0111 123456888


Q ss_pred             CCCEEEEeeCCCcEEEEECCCCcEEEEEe
Q 021399          202 DGSHFLTGSLDKSAKLWDARTLELIKTYV  230 (313)
Q Consensus       202 ~~~~l~s~s~dg~i~iwd~~~~~~~~~~~  230 (313)
                      .|++|+-|+.=| |++.++.++.+++.+-
T Consensus       287 s~~flly~t~~g-ikvin~~tn~v~ri~g  314 (558)
T KOG0882|consen  287 SGNFLLYGTILG-IKVINLDTNTVVRILG  314 (558)
T ss_pred             CCCEEEeeccee-EEEEEeecCeEEEEec
Confidence            899999888765 8999999999988874

>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.00  E-value=0.00052  Score=62.80  Aligned_cols=160  Identities=18%  Similarity=0.262  Sum_probs=105.0

Q ss_pred             cccccccceeEEEEccC-------------CCEEEEeeCCCCeEEEeCCCCcEEEEecCCCCceEEEEECCC-----CCe
Q 021399            5 LMKGHERPLTYLKYNKD-------------GDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRD-----SMT   66 (313)
Q Consensus         5 ~l~~h~~~v~~~~fs~~-------------g~~l~s~s~d~~i~iw~~~~~~~~~~~~~H~~~V~~~~~~~~-----~~~   66 (313)
                      .|..|.+.|.-..+.-+             |++++|||.||+|.|-..-+.+...++.- ..++.+++++|+     .+.
T Consensus        53 ~~GtH~g~v~~~~~~~~~~~~~~~s~~~~~Gey~asCS~DGkv~I~sl~~~~~~~~~df-~rpiksial~Pd~~~~~sk~  131 (846)
T KOG2066|consen   53 ALGTHRGAVYLTTCQGNPKTNFDHSSSILEGEYVASCSDDGKVVIGSLFTDDEITQYDF-KRPIKSIALHPDFSRQQSKQ  131 (846)
T ss_pred             eeccccceEEEEecCCcccccccccccccCCceEEEecCCCcEEEeeccCCccceeEec-CCcceeEEeccchhhhhhhh
Confidence            35567777766665555             99999999999999998888877666654 457899999997     457


Q ss_pred             EEEeeCCCcEEEEECCCCeEEEEecCCCCeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCC
Q 021399           67 LITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQ  146 (313)
Q Consensus        67 l~s~s~D~~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  146 (313)
                      |++||.-| +.+..-. .       ++.                                         ...+ .+....
T Consensus       132 fv~GG~ag-lvL~er~-w-------lgn-----------------------------------------k~~v-~l~~~e  160 (846)
T KOG2066|consen  132 FVSGGMAG-LVLSERN-W-------LGN-----------------------------------------KDSV-VLSEGE  160 (846)
T ss_pred             eeecCcce-EEEehhh-h-------hcC-----------------------------------------ccce-eeecCc
Confidence            88988877 5444311 0       000                                         0000 223345


Q ss_pred             CceEEEEEccCCCEEEEeeCCCeEEEEECCCCceeeecccccC---ceeceEEEEECCCCCEEEEeeCCCcEEEEECC
Q 021399          147 GRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETG---HKKTITSLAKAADGSHFLTGSLDKSAKLWDAR  221 (313)
Q Consensus       147 ~~i~~~~~~~~~~~i~t~~~d~~i~lwd~~~~~~~~~~~~~~~---h~~~v~~~~~s~~~~~l~s~s~dg~i~iwd~~  221 (313)
                      ++|.++.|.  |++||=++++| |+++|+.+++.+..+.....   -..-...+.|.++. .++-| ...+|++..++
T Consensus       161 G~I~~i~W~--g~lIAWand~G-v~vyd~~~~~~l~~i~~p~~~~R~e~fpphl~W~~~~-~LVIG-W~d~v~i~~I~  233 (846)
T KOG2066|consen  161 GPIHSIKWR--GNLIAWANDDG-VKVYDTPTRQRLTNIPPPSQSVRPELFPPHLHWQDED-RLVIG-WGDSVKICSIK  233 (846)
T ss_pred             cceEEEEec--CcEEEEecCCC-cEEEeccccceeeccCCCCCCCCcccCCCceEecCCC-eEEEe-cCCeEEEEEEe
Confidence            788889886  56888888877 79999988877655543211   01123456787654 45544 34468888776

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=97.98  E-value=0.0063  Score=49.94  Aligned_cols=184  Identities=15%  Similarity=0.098  Sum_probs=104.9

Q ss_pred             eeEEEEc-cCCCEEEEeeCCCCeEEEeCCCCcEEEEecC-----CCCceEEEEECCCCCeEEEeeCC--------CcEEE
Q 021399           13 LTYLKYN-KDGDLLFSCAKDHTPTVWFADNGERLGTYRG-----HNGAVWCCDVSRDSMTLITGSAD--------QTAKL   78 (313)
Q Consensus        13 v~~~~fs-~~g~~l~s~s~d~~i~iw~~~~~~~~~~~~~-----H~~~V~~~~~~~~~~~l~s~s~D--------~~v~v   78 (313)
                      ...+.+. ++|.+++ +..++ +.++|.++++....+..     .....+.+++.++|++.++....        |.+..
T Consensus        42 ~~G~~~~~~~g~l~v-~~~~~-~~~~d~~~g~~~~~~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~  119 (246)
T PF08450_consen   42 PNGMAFDRPDGRLYV-ADSGG-IAVVDPDTGKVTVLADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYR  119 (246)
T ss_dssp             EEEEEEECTTSEEEE-EETTC-EEEEETTTTEEEEEEEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEE
T ss_pred             CceEEEEccCCEEEE-EEcCc-eEEEecCCCcEEEEeeccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEE
Confidence            5667777 6655544 55544 45569888864333221     23456889999999988876544        45667


Q ss_pred             EECCCCeEEEEecCCCCeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCC--C-CceEEEecCCCCceEEEEEc
Q 021399           79 WNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQ--G-GESVLILKGPQGRINRAVWG  155 (313)
Q Consensus        79 Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-~~~~~~~~~~~~~i~~~~~~  155 (313)
                      ++.. ++.......-.....+.|+++++.+.+....      ...++....+....  . ......+....+..-.+++.
T Consensus       120 ~~~~-~~~~~~~~~~~~pNGi~~s~dg~~lyv~ds~------~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD  192 (246)
T PF08450_consen  120 IDPD-GKVTVVADGLGFPNGIAFSPDGKTLYVADSF------NGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVD  192 (246)
T ss_dssp             EETT-SEEEEEEEEESSEEEEEEETTSSEEEEEETT------TTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEB
T ss_pred             ECCC-CeEEEEecCcccccceEECCcchheeecccc------cceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEc
Confidence            7776 5544433333456778888877655433211      11122221111110  0 01112222223346778899


Q ss_pred             cCCCEEEEeeCCCeEEEEECCCCceeeecccccCceeceEEEEE-CCCCCEEEEe
Q 021399          156 PLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAK-AADGSHFLTG  209 (313)
Q Consensus       156 ~~~~~i~t~~~d~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~-s~~~~~l~s~  209 (313)
                      .+|+.+++....+.|.++|.. ++.+..+...   ...+++++| .++.+.|...
T Consensus       193 ~~G~l~va~~~~~~I~~~~p~-G~~~~~i~~p---~~~~t~~~fgg~~~~~L~vT  243 (246)
T PF08450_consen  193 SDGNLWVADWGGGRIVVFDPD-GKLLREIELP---VPRPTNCAFGGPDGKTLYVT  243 (246)
T ss_dssp             TTS-EEEEEETTTEEEEEETT-SCEEEEEE-S---SSSEEEEEEESTTSSEEEEE
T ss_pred             CCCCEEEEEcCCCEEEEECCC-ccEEEEEcCC---CCCEEEEEEECCCCCEEEEE
Confidence            999988887788999999987 7777665432   237888888 4665655443

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]

Probab=97.94  E-value=0.00016  Score=66.99  Aligned_cols=137  Identities=17%  Similarity=0.209  Sum_probs=92.2

Q ss_pred             CCCEEEEeeCCCeEEEEECCCCceeeecccccCceeceEEEEECCCCCEEEEeeC---------CCcEEEEECCCCcEEE
Q 021399          157 LNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSL---------DKSAKLWDARTLELIK  227 (313)
Q Consensus       157 ~~~~i~t~~~d~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~---------dg~i~iwd~~~~~~~~  227 (313)
                      +++.+.+|...|+|-|-|+++.+.+.++.   .|++.+.++.  -.|+.|++++.         |..|++||+|+.+.+.
T Consensus       186 Nnr~lf~G~t~G~V~LrD~~s~~~iht~~---aHs~siSDfD--v~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~  260 (1118)
T KOG1275|consen  186 NNRNLFCGDTRGTVFLRDPNSFETIHTFD---AHSGSISDFD--VQGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALS  260 (1118)
T ss_pred             cCcEEEeecccceEEeecCCcCceeeeee---ccccceeeee--ccCCeEEEeecccccccccccchhhhhhhhhhhccC
Confidence            45678889999999999999888777664   6888888755  56889999875         5678999999988877


Q ss_pred             EEecCCceeEEEeccCCCEEEEcccccC-ceeE----eeccCCCceeeeeeehhhhhhhccccccccceeEEEECCCCCe
Q 021399          228 TYVTERPVNAVTMSPLLDHVVLGGGQDA-SAVT----TTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKR  302 (313)
Q Consensus       228 ~~~~~~~~~~~~~~p~~~~~~~~~~~~~-~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~fspdgk~  302 (313)
                      .+..+.....+-|+|.....++..+..+ ..+.    +.+++.+.+   ..+           -..+.+.++.+|++|.-
T Consensus       261 PI~~~~~P~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsNP~~~~~---~v~-----------p~~s~i~~fDiSsn~~a  326 (1118)
T KOG1275|consen  261 PIQFPYGPQFLRFHPSLTTRLAVTSQSGQFQFVDTATLSNPPAGVK---MVN-----------PNGSGISAFDISSNGDA  326 (1118)
T ss_pred             CcccccCchhhhhcccccceEEEEecccceeeccccccCCCcccee---EEc-----------cCCCcceeEEecCCCce
Confidence            7665544566778887654433222221 1111    112222111   111           12345899999999999


Q ss_pred             eEEEEEEEee
Q 021399          303 YGFLLLQINV  312 (313)
Q Consensus       303 ~~~~~~~~~~  312 (313)
                      +||...-++|
T Consensus       327 lafgd~~g~v  336 (1118)
T KOG1275|consen  327 LAFGDHEGHV  336 (1118)
T ss_pred             EEEecccCcE
Confidence            9998876554

>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]

Probab=97.93  E-value=0.019  Score=55.46  Aligned_cols=193  Identities=15%  Similarity=0.140  Sum_probs=119.0

Q ss_pred             CCceEEEEECCCCCeEEEeeCCCcEEEEECCCCeEEEEecCCCCeeEEEeecCCeEEEEECC-Cceecccc----ceeee
Q 021399           52 NGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTD-PFMELNSA----IHVKR  126 (313)
Q Consensus        52 ~~~V~~~~~~~~~~~l~s~s~D~~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~----~~~~~  126 (313)
                      .+.|.++.|..+.+.++.+..+|.|.+-|+++............+..+.|+|+++.++..+. ....+-..    +....
T Consensus        68 d~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~eivg~vd~GI~aaswS~Dee~l~liT~~~tll~mT~~f~~i~E~~  147 (1265)
T KOG1920|consen   68 DDEIVSVQFLADTNSICVITALGDIILVDPETLELEIVGNVDNGISAASWSPDEELLALITGRQTLLFMTKDFEPIAEKP  147 (1265)
T ss_pred             CcceEEEEEecccceEEEEecCCcEEEEcccccceeeeeeccCceEEEeecCCCcEEEEEeCCcEEEEEeccccchhccc
Confidence            46899999998888888888899999999998877777777888999999998777665543 21111000    00000


Q ss_pred             -------------eeeCCCC-----CCC-----ceEEEec--C---CCCceEEEEEccCCCEEEE-----eeCCCeEEEE
Q 021399          127 -------------IARDPAD-----QGG-----ESVLILK--G---PQGRINRAVWGPLNRTIIS-----AGEDAIVRIW  173 (313)
Q Consensus       127 -------------~~~~~~~-----~~~-----~~~~~~~--~---~~~~i~~~~~~~~~~~i~t-----~~~d~~i~lw  173 (313)
                                   +.+....     ..+     +.....+  +   -.+.=.++.|--+|.++++     ..+...|++|
T Consensus       148 L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~~~RkirV~  227 (1265)
T KOG1920|consen  148 LDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVESETGTRKIRVY  227 (1265)
T ss_pred             cccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccCCcEEEEEEEeccCCceeEEEe
Confidence                         1111000     000     0000000  0   0111245889999999888     3334799999


Q ss_pred             ECCCCceeeecccccCceeceEEEEECCCCCEEEEee---CCCcEEEEECCCCcEEEEE----e-cCCceeEEEeccCCC
Q 021399          174 DTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGS---LDKSAKLWDARTLELIKTY----V-TERPVNAVTMSPLLD  245 (313)
Q Consensus       174 d~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s---~dg~i~iwd~~~~~~~~~~----~-~~~~~~~~~~~p~~~  245 (313)
                      |.+ +.+-..-.   .....-.+++|-|.|..+++-.   .|+.|.++.... ..-..+    . ...++..++|+.+++
T Consensus       228 drE-g~Lns~se---~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErNG-L~hg~f~l~~p~de~~ve~L~Wns~sd  302 (1265)
T KOG1920|consen  228 DRE-GALNSTSE---PVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERNG-LRHGEFVLPFPLDEKEVEELAWNSNSD  302 (1265)
T ss_pred             ccc-chhhcccC---cccccccceeecCCCCeEeeeeecCCCCcEEEEecCC-ccccccccCCcccccchheeeecCCCC
Confidence            987 54322211   2234557899999999988753   466899997543 222222    2 233488999999998


Q ss_pred             EEEE
Q 021399          246 HVVL  249 (313)
Q Consensus       246 ~~~~  249 (313)
                      .+++
T Consensus       303 iLAv  306 (1265)
T KOG1920|consen  303 ILAV  306 (1265)
T ss_pred             ceee
Confidence            7766

>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal

Probab=97.90  E-value=0.0082  Score=48.72  Aligned_cols=168  Identities=14%  Similarity=0.109  Sum_probs=97.8

Q ss_pred             eEEEEccCCCEEEEeeCCCCeEEEeCCCCcEEEEecC-C------CCceEEEEECCC------CCeEEEeeCCCcEEEEE
Q 021399           14 TYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRG-H------NGAVWCCDVSRD------SMTLITGSADQTAKLWN   80 (313)
Q Consensus        14 ~~~~fs~~g~~l~s~s~d~~i~iw~~~~~~~~~~~~~-H------~~~V~~~~~~~~------~~~l~s~s~D~~v~vWd   80 (313)
                      .-++||||+..||.+...|+|+++|+...+. ..+.. +      ..+|-.+.|-+-      ...|+.-..+|.++-+-
T Consensus        47 Rkl~WSpD~tlLa~a~S~G~i~vfdl~g~~l-f~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~  125 (282)
T PF15492_consen   47 RKLAWSPDCTLLAYAESTGTIRVFDLMGSEL-FVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYL  125 (282)
T ss_pred             eEEEECCCCcEEEEEcCCCeEEEEeccccee-EEcCcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEE
Confidence            4689999999999999999999999875433 23321 1      245555555332      12455556777777665


Q ss_pred             CCCC-----eEEEEec----CCCCeeEEEeecCCeEEEEECCCceec------cccceeeeeeeCCC----------CCC
Q 021399           81 VETG-----AQLFTFN----FDSPARSVDFAVGDKLAVITTDPFMEL------NSAIHVKRIARDPA----------DQG  135 (313)
Q Consensus        81 ~~~~-----~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~----------~~~  135 (313)
                      +..+     +....+.    +...+..+.++++..++++........      ...+..|++..+..          ...
T Consensus       126 vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h~LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~~Pyyk~v~~~~~~~~  205 (282)
T PF15492_consen  126 VSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKHRLLLVGGCEQNQDGMSKASSCGLTAWRILSDSPYYKQVTSSEDDIT  205 (282)
T ss_pred             EEcccCCcceeeEEEEecccCCCceeEEEEcCCCCEEEEeccCCCCCccccccccCceEEEEcCCCCcEEEccccCcccc
Confidence            4221     1222332    245677777888766665554321110      11222333322111          000


Q ss_pred             --C-----ceEE---Ee---cCCCCceEEEEEccCCCEEEEeeCCCeEEEEECCCCceee
Q 021399          136 --G-----ESVL---IL---KGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLK  182 (313)
Q Consensus       136 --~-----~~~~---~~---~~~~~~i~~~~~~~~~~~i~t~~~d~~i~lwd~~~~~~~~  182 (313)
                        .     ..+.   .+   ...+..|..+..+|++..+|+..-+|.|.||++.+-++.+
T Consensus       206 ~~~~~~~~~~~~~~~~fs~~~~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL~~~~  265 (282)
T PF15492_consen  206 ASSKRRGLLRIPSFKFFSRQGQEQDGIFKMSLSPDGSLLACIHFSGSLSLWEIPSLRLQR  265 (282)
T ss_pred             ccccccceeeccceeeeeccccCCCceEEEEECCCCCEEEEEEcCCeEEEEecCcchhhc
Confidence              0     0000   00   1134568899999999999999999999999987644433

>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]

Probab=97.89  E-value=2.2e-05  Score=72.29  Aligned_cols=146  Identities=18%  Similarity=0.233  Sum_probs=96.3

Q ss_pred             EEEEecCCCCceEEEEECCCCCeEEEeeCCCcEEEEECCCCeEEEEecCCCCeeEEEeecCCeEEEEECCCceeccccce
Q 021399           44 RLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIH  123 (313)
Q Consensus        44 ~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  123 (313)
                      ..++|+.|...-+|++|+-+.+.++.|+..|.|+++++.+|.....                                  
T Consensus      1093 ~w~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s---------------------------------- 1138 (1516)
T KOG1832|consen 1093 SWRSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEES---------------------------------- 1138 (1516)
T ss_pred             cchhhhccccceeeEEeecCCceEEeeeccceEEEEEccCcccccc----------------------------------
Confidence            3457888998999999999999999999999999999988753211                                  


Q ss_pred             eeeeeeCCCCCCCceEEEecCCCCceEEEEEccCCCEEEEeeC--CCeEEEEECCCCceeeecccccCce-eceEEEEEC
Q 021399          124 VKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGE--DAIVRIWDTETGKLLKESDKETGHK-KTITSLAKA  200 (313)
Q Consensus       124 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~t~~~--d~~i~lwd~~~~~~~~~~~~~~~h~-~~v~~~~~s  200 (313)
                                        ..+|++.++-+.-+.+|...++.+.  ..-..+|++.+-  ...     .|+ ..-.++.|+
T Consensus      1139 ------------------~ncH~SavT~vePs~dgs~~Ltsss~S~PlsaLW~~~s~--~~~-----~Hsf~ed~~vkFs 1193 (1516)
T KOG1832|consen 1139 ------------------VNCHQSAVTLVEPSVDGSTQLTSSSSSSPLSALWDASST--GGP-----RHSFDEDKAVKFS 1193 (1516)
T ss_pred             ------------------ccccccccccccccCCcceeeeeccccCchHHHhccccc--cCc-----cccccccceeehh
Confidence                              1235555555555555665555443  234678997641  111     132 234566776


Q ss_pred             CCCCEEEEeeCCCcEEEEECCCCcEEEEEec-----CCceeEEEeccCCCEEE
Q 021399          201 ADGSHFLTGSLDKSAKLWDARTLELIKTYVT-----ERPVNAVTMSPLLDHVV  248 (313)
Q Consensus       201 ~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~-----~~~~~~~~~~p~~~~~~  248 (313)
                      .....-+.|..-....+||++|+.++.++..     ...-+++.|+|...-++
T Consensus      1194 n~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D~LIl 1246 (1516)
T KOG1832|consen 1194 NSLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCDTLIL 1246 (1516)
T ss_pred             hhHHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhccccccCCCcceEe
Confidence            5544444555545688999999988777532     22357788999876544

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=97.85  E-value=0.0073  Score=53.39  Aligned_cols=189  Identities=13%  Similarity=0.142  Sum_probs=100.4

Q ss_pred             CCEEEEeeCCCCeEEEeCCCCcEEEEecCCCCceEE-EEECCCCCeEEEeeCCCcEEEEECCCCeEEEEecCCCCeeEEE
Q 021399           22 GDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWC-CDVSRDSMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVD  100 (313)
Q Consensus        22 g~~l~s~s~d~~i~iw~~~~~~~~~~~~~H~~~V~~-~~~~~~~~~l~s~s~D~~v~vWd~~~~~~~~~~~~~~~~~~~~  100 (313)
                      +..++.++.++.+.-+|.++|+.+.+.+... .+.+ ..+.  +..++.+..++.+..+|.++++.++......+.....
T Consensus       120 ~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~-~~~ssP~v~--~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~  196 (394)
T PRK11138        120 GGKVYIGSEKGQVYALNAEDGEVAWQTKVAG-EALSRPVVS--DGLVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLR  196 (394)
T ss_pred             CCEEEEEcCCCEEEEEECCCCCCcccccCCC-ceecCCEEE--CCEEEEECCCCEEEEEEccCCCEeeeecCCCCccccc
Confidence            4566778888999999999999887776433 2221 1222  3356667788999999999999988775432211000


Q ss_pred             -----eecCCeEEEEECCCce-ec--cccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEcc--CCCEEEEeeCCCeE
Q 021399          101 -----FAVGDKLAVITTDPFM-EL--NSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGP--LNRTIISAGEDAIV  170 (313)
Q Consensus       101 -----~~~~~~~~~~~~~~~~-~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~~~i~t~~~d~~i  170 (313)
                           ...++.+.+...+... .+  ......|........ .....       .+...+.-+|  .+..+..++.++.+
T Consensus       197 ~~~sP~v~~~~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~-~~~~~-------~~~~~~~~sP~v~~~~vy~~~~~g~l  268 (394)
T PRK11138        197 GESAPATAFGGAIVGGDNGRVSAVLMEQGQLIWQQRISQPT-GATEI-------DRLVDVDTTPVVVGGVVYALAYNGNL  268 (394)
T ss_pred             CCCCCEEECCEEEEEcCCCEEEEEEccCChhhheeccccCC-Cccch-------hcccccCCCcEEECCEEEEEEcCCeE
Confidence                 0012233332222111 00  000011111000000 00000       0000000011  24456667788999


Q ss_pred             EEEECCCCceeeecccccCceeceEEEEECCCCCEEEEeeCCCcEEEEECCCCcEEEE
Q 021399          171 RIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKT  228 (313)
Q Consensus       171 ~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~  228 (313)
                      ..+|..+++.+=+...  +   ....+.  ..+..++.++.||.+..+|.++++.+-.
T Consensus       269 ~ald~~tG~~~W~~~~--~---~~~~~~--~~~~~vy~~~~~g~l~ald~~tG~~~W~  319 (394)
T PRK11138        269 VALDLRSGQIVWKREY--G---SVNDFA--VDGGRIYLVDQNDRVYALDTRGGVELWS  319 (394)
T ss_pred             EEEECCCCCEEEeecC--C---CccCcE--EECCEEEEEcCCCeEEEEECCCCcEEEc
Confidence            9999999876432221  1   111122  2456788888999999999999887544

>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=97.85  E-value=0.00013  Score=64.84  Aligned_cols=92  Identities=20%  Similarity=0.185  Sum_probs=76.4

Q ss_pred             ccceeEEEEccCCCEEEEeeCCCCeEEEeCCCCcEEEEecCCCCceE-EEEECCCCCeEEEeeCCCcEEEEECCCCeEEE
Q 021399           10 ERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVW-CCDVSRDSMTLITGSADQTAKLWNVETGAQLF   88 (313)
Q Consensus        10 ~~~v~~~~fs~~g~~l~s~s~d~~i~iw~~~~~~~~~~~~~H~~~V~-~~~~~~~~~~l~s~s~D~~v~vWd~~~~~~~~   88 (313)
                      ...+.-+.|+|.-+.||.+..+|.+.++.+. -..+.++.-|...|+ +++|.|||++++.|=.||+|++-|++++..+.
T Consensus        20 ~~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l~   98 (665)
T KOG4640|consen   20 PINIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRLV   98 (665)
T ss_pred             ccceEEEEEcCccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCcee
Confidence            3456789999999999999999999999987 667888988888887 99999999999999999999999999987776


Q ss_pred             E--ecCCCCeeEEEee
Q 021399           89 T--FNFDSPARSVDFA  102 (313)
Q Consensus        89 ~--~~~~~~~~~~~~~  102 (313)
                      .  +....++....|.
T Consensus        99 ~~~~s~e~~is~~~w~  114 (665)
T KOG4640|consen   99 SFLFSVETDISKGIWD  114 (665)
T ss_pred             ccccccccchheeecc
Confidence            5  3334445555443

>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.84  E-value=0.00084  Score=56.70  Aligned_cols=80  Identities=15%  Similarity=0.165  Sum_probs=57.9

Q ss_pred             EecCCCCceEEEEECCCCC-eEEEeeCCCcEEEEECCCCeEEEEecCCCCeeEEEeecCCeEEEEECCCceeccccceee
Q 021399           47 TYRGHNGAVWCCDVSRDSM-TLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVK  125 (313)
Q Consensus        47 ~~~~H~~~V~~~~~~~~~~-~l~s~s~D~~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  125 (313)
                      -+.+|...|..++|+|.++ ++..++.+.+|+|.|+++...+..+...                                
T Consensus       188 ~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~--------------------------------  235 (463)
T KOG1645|consen  188 ILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAY--------------------------------  235 (463)
T ss_pred             cccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheecc--------------------------------
Confidence            3456777899999999887 7888999999999999886544322211                                


Q ss_pred             eeeeCCCCCCCceEEEecCCCCceEEEEEccCC-CEEEEeeCCCeEEEEECCCCc
Q 021399          126 RIARDPADQGGESVLILKGPQGRINRAVWGPLN-RTIISAGEDAIVRIWDTETGK  179 (313)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~i~t~~~d~~i~lwd~~~~~  179 (313)
                                           ..+.+++|..++ .+|..|...|.|.++|++..+
T Consensus       236 ---------------------~~~wSC~wDlde~h~IYaGl~nG~VlvyD~R~~~  269 (463)
T KOG1645|consen  236 ---------------------NQIWSCCWDLDERHVIYAGLQNGMVLVYDMRQPE  269 (463)
T ss_pred             ---------------------CCceeeeeccCCcceeEEeccCceEEEEEccCCC
Confidence                                 344556666544 355667788999999987654

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=97.76  E-value=0.0033  Score=55.69  Aligned_cols=188  Identities=14%  Similarity=0.153  Sum_probs=108.3

Q ss_pred             cccccceeEEEEccCCCEEEEeeC---C-CCeEEEeCCCCcEEE--EecCCCCceEEEEECCCCCe-EEEeeCCCcEEEE
Q 021399            7 KGHERPLTYLKYNKDGDLLFSCAK---D-HTPTVWFADNGERLG--TYRGHNGAVWCCDVSRDSMT-LITGSADQTAKLW   79 (313)
Q Consensus         7 ~~h~~~v~~~~fs~~g~~l~s~s~---d-~~i~iw~~~~~~~~~--~~~~H~~~V~~~~~~~~~~~-l~s~s~D~~v~vW   79 (313)
                      ..-...+..-+|+|+++.++--+.   . ..+.++++++++...  .+.++.   ...+|+|||+. +++...||...||
T Consensus       189 ~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~~~g~~---~~P~fspDG~~l~f~~~rdg~~~iy  265 (425)
T COG0823         189 TDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILNFNGNN---GAPAFSPDGSKLAFSSSRDGSPDIY  265 (425)
T ss_pred             cccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeeccCCcc---CCccCCCCCCEEEEEECCCCCccEE
Confidence            333445566789999988776532   2 358888998886543  344443   44689999975 4566678877666


Q ss_pred             EC--CCCeEEEEecCCCCeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEccC
Q 021399           80 NV--ETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPL  157 (313)
Q Consensus        80 d~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~  157 (313)
                      -+  .++.... +.                                                    ...+.-..-.|+|+
T Consensus       266 ~~dl~~~~~~~-Lt----------------------------------------------------~~~gi~~~Ps~spd  292 (425)
T COG0823         266 LMDLDGKNLPR-LT----------------------------------------------------NGFGINTSPSWSPD  292 (425)
T ss_pred             EEcCCCCccee-cc----------------------------------------------------cCCccccCccCCCC
Confidence            43  3322110 00                                                    00011113447888


Q ss_pred             CCEEEEee-CCCe--EEEEECCCCceeeecccccCceeceEEEEECCCCCEEEEeeCC-Cc--EEEEECCCCcEEEEEec
Q 021399          158 NRTIISAG-EDAI--VRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLD-KS--AKLWDARTLELIKTYVT  231 (313)
Q Consensus       158 ~~~i~t~~-~d~~--i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d-g~--i~iwd~~~~~~~~~~~~  231 (313)
                      |+.|+-.+ ..|.  |.+.|.+.+.. .++....+  .. ..-.++|||++|+..+.. |.  |-+.|+.++.-++.+..
T Consensus       293 G~~ivf~Sdr~G~p~I~~~~~~g~~~-~riT~~~~--~~-~~p~~SpdG~~i~~~~~~~g~~~i~~~~~~~~~~~~~lt~  368 (425)
T COG0823         293 GSKIVFTSDRGGRPQIYLYDLEGSQV-TRLTFSGG--GN-SNPVWSPDGDKIVFESSSGGQWDIDKNDLASGGKIRILTS  368 (425)
T ss_pred             CCEEEEEeCCCCCcceEEECCCCCce-eEeeccCC--CC-cCccCCCCCCEEEEEeccCCceeeEEeccCCCCcEEEccc
Confidence            88877654 3343  55666665443 22222111  11 155799999999887753 44  56666766554455444


Q ss_pred             CCceeEEEeccCCCEEEEccccc
Q 021399          232 ERPVNAVTMSPLLDHVVLGGGQD  254 (313)
Q Consensus       232 ~~~~~~~~~~p~~~~~~~~~~~~  254 (313)
                      ......-++.|++..++..++..
T Consensus       369 ~~~~e~ps~~~ng~~i~~~s~~~  391 (425)
T COG0823         369 TYLNESPSWAPNGRMIMFSSGQG  391 (425)
T ss_pred             cccCCCCCcCCCCceEEEeccCC
Confidence            44445566778887776655443

>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=97.73  E-value=0.00021  Score=63.64  Aligned_cols=92  Identities=20%  Similarity=0.205  Sum_probs=72.1

Q ss_pred             CceEEEEEccCCCEEEEeeCCCeEEEEECCCCceeeecccccCceeceE-EEEECCCCCEEEEeeCCCcEEEEECCCCcE
Q 021399          147 GRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTIT-SLAKAADGSHFLTGSLDKSAKLWDARTLEL  225 (313)
Q Consensus       147 ~~i~~~~~~~~~~~i~t~~~d~~i~lwd~~~~~~~~~~~~~~~h~~~v~-~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~  225 (313)
                      ..+..+.|+|.-..||.+..+|.|-+..+...+.. .+.   -++..++ +++|.|||+.||.|-.||+|++-|.+++..
T Consensus        21 ~~i~~~ewnP~~dLiA~~t~~gelli~R~n~qRlw-tip---~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~   96 (665)
T KOG4640|consen   21 INIKRIEWNPKMDLIATRTEKGELLIHRLNWQRLW-TIP---IPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGR   96 (665)
T ss_pred             cceEEEEEcCccchhheeccCCcEEEEEeccceeE-ecc---CCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCc
Confidence            35677889999999999999999988887743332 222   1445555 999999999999999999999999999988


Q ss_pred             EEE--EecCCceeEEEecc
Q 021399          226 IKT--YVTERPVNAVTMSP  242 (313)
Q Consensus       226 ~~~--~~~~~~~~~~~~~p  242 (313)
                      +..  +..+.++..+-|.|
T Consensus        97 l~~~~~s~e~~is~~~w~~  115 (665)
T KOG4640|consen   97 LVSFLFSVETDISKGIWDR  115 (665)
T ss_pred             eeccccccccchheeeccc
Confidence            877  33455677777754

>KOG1912 consensus WD40 repeat protein [General function prediction only]

Probab=97.73  E-value=0.0064  Score=55.87  Aligned_cols=217  Identities=11%  Similarity=0.053  Sum_probs=122.6

Q ss_pred             eeEEEEccCCCEEEEeeCCCCeEEEeCCCCcEEEEecCCCCceEEEEECCCC------------CeEEEeeCCCcEEEEE
Q 021399           13 LTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDS------------MTLITGSADQTAKLWN   80 (313)
Q Consensus        13 v~~~~fs~~g~~l~s~s~d~~i~iw~~~~~~~~~~~~~H~~~V~~~~~~~~~------------~~l~s~s~D~~v~vWd   80 (313)
                      -.++.|+|.| +|+-|+. ..|.+-|..+.+.+.+++-|...|+.+.|.|..            -+++++...|.|.+||
T Consensus        18 ~~A~Dw~~~G-LiAygsh-slV~VVDs~s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d   95 (1062)
T KOG1912|consen   18 RNAADWSPSG-LIAYGSH-SLVSVVDSRSLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVD   95 (1062)
T ss_pred             ccccccCccc-eEEEecC-ceEEEEehhhhhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEEE
Confidence            4578889877 6665654 577888999999999999999999999997621            2577788889999999


Q ss_pred             CCCCeEEEEecC-CCCeeEEEeec---CC-eE-EEEECCCceeccc---cceeeeeeeCCCCCCCceEEEecCCCCceEE
Q 021399           81 VETGAQLFTFNF-DSPARSVDFAV---GD-KL-AVITTDPFMELNS---AIHVKRIARDPADQGGESVLILKGPQGRINR  151 (313)
Q Consensus        81 ~~~~~~~~~~~~-~~~~~~~~~~~---~~-~~-~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~  151 (313)
                      ...+..+..+.. ..++..+.|.+   +. .+ +++....+..+++   ...+|..               ........+
T Consensus        96 ~~~~s~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~---------------~ys~~iLs~  160 (1062)
T KOG1912|consen   96 FVLASVINWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKY---------------DYSHEILSC  160 (1062)
T ss_pred             ehhhhhhhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeecc---------------ccCCcceee
Confidence            988766655543 34555555543   22 22 2222222222221   1111111               111122233


Q ss_pred             EEEccC-CCEEEEeeCCCeEEEEECC-CCc---eeeecccccCcee----------------c---------eEEEEECC
Q 021399          152 AVWGPL-NRTIISAGEDAIVRIWDTE-TGK---LLKESDKETGHKK----------------T---------ITSLAKAA  201 (313)
Q Consensus       152 ~~~~~~-~~~i~t~~~d~~i~lwd~~-~~~---~~~~~~~~~~h~~----------------~---------v~~~~~s~  201 (313)
                      ..+.|= .+.+..-+..|.+.+.+.- ...   .-+++...+.|+.                .         ...++|+|
T Consensus       161 f~~DPfd~rh~~~l~s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p  240 (1062)
T KOG1912|consen  161 FRVDPFDSRHFCVLGSKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSP  240 (1062)
T ss_pred             eeeCCCCcceEEEEccCceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcCh
Confidence            344432 2344444445655555421 100   0111111111111                1         11234677


Q ss_pred             CCCEEEEeeCCCcEEEEECCCCcEEEEEecC-CceeEEEeccCCCE
Q 021399          202 DGSHFLTGSLDKSAKLWDARTLELIKTYVTE-RPVNAVTMSPLLDH  246 (313)
Q Consensus       202 ~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~-~~~~~~~~~p~~~~  246 (313)
                      .-+.++-...-..+.++|++-..++....-+ ..+..+.+-|+.+.
T Consensus       241 ~~rn~lfi~~prellv~dle~~~~l~vvpier~~akfv~vlP~~~r  286 (1062)
T KOG1912|consen  241 HWRNILFITFPRELLVFDLEYECCLAVVPIERGGAKFVDVLPDPRR  286 (1062)
T ss_pred             hhhceEEEEeccceEEEcchhhceeEEEEeccCCcceeEeccCCCc
Confidence            6666666667788999999988888776543 34566777776543

>smart00320 WD40 WD40 repeats

Probab=97.72  E-value=5.5e-05  Score=41.47  Aligned_cols=34  Identities=35%  Similarity=0.643  Sum_probs=31.2

Q ss_pred             cccccccceeEEEEccCCCEEEEeeCCCCeEEEe
Q 021399            5 LMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWF   38 (313)
Q Consensus         5 ~l~~h~~~v~~~~fs~~g~~l~s~s~d~~i~iw~   38 (313)
                      .+..|...|.+++|++++..+++++.|+.+++|+
T Consensus         7 ~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~   40 (40)
T smart00320        7 TLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD   40 (40)
T ss_pred             EEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence            4667899999999999999999999999999995

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.

>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]

Probab=97.71  E-value=0.023  Score=54.92  Aligned_cols=203  Identities=13%  Similarity=0.098  Sum_probs=112.9

Q ss_pred             cceeEEEEccCCCEEEEeeCCCCeEEEeCCCCcEEEEecCCCCceEEEEECCCCCeEEEeeCCCcEEEEEC----CCCeE
Q 021399           11 RPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNV----ETGAQ   86 (313)
Q Consensus        11 ~~v~~~~fs~~g~~l~s~s~d~~i~iw~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~v~vWd~----~~~~~   86 (313)
                      +.|.++.|-.+..-|+.+..+|.|.+-|.++.... ....-...|.+++|+||.++++-...++++.+-..    -..+.
T Consensus        69 ~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~e-ivg~vd~GI~aaswS~Dee~l~liT~~~tll~mT~~f~~i~E~~  147 (1265)
T KOG1920|consen   69 DEIVSVQFLADTNSICVITALGDIILVDPETLELE-IVGNVDNGISAASWSPDEELLALITGRQTLLFMTKDFEPIAEKP  147 (1265)
T ss_pred             cceEEEEEecccceEEEEecCCcEEEEccccccee-eeeeccCceEEEeecCCCcEEEEEeCCcEEEEEeccccchhccc
Confidence            57899999999999999999999999977765431 11223578999999999999988888888765432    11111


Q ss_pred             E----------EEec-------C------------------------CCCeeEEEeecCCeEEEEECCCceeccccceee
Q 021399           87 L----------FTFN-------F------------------------DSPARSVDFAVGDKLAVITTDPFMELNSAIHVK  125 (313)
Q Consensus        87 ~----------~~~~-------~------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  125 (313)
                      +          ....       +                        .....++.|..++++.+++.-........+.++
T Consensus       148 L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~~~RkirV~  227 (1265)
T KOG1920|consen  148 LDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVESETGTRKIRVY  227 (1265)
T ss_pred             cccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccCCcEEEEEEEeccCCceeEEEe
Confidence            1          0000       0                        001123445444433333210000000111111


Q ss_pred             eeeeCCCCCCCceEEEecCCCCceEEEEEccCCCEEEEe---eCCCeEEEEECCCCceeeecccccCc-eeceEEEEECC
Q 021399          126 RIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISA---GEDAIVRIWDTETGKLLKESDKETGH-KKTITSLAKAA  201 (313)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~t~---~~d~~i~lwd~~~~~~~~~~~~~~~h-~~~v~~~~~s~  201 (313)
                      +-. ...+...++      ..+--.++.|-|.|..+++-   +.|+.|.++..+ |-.-..+.....- ...+..++|..
T Consensus       228 drE-g~Lns~se~------~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErN-GL~hg~f~l~~p~de~~ve~L~Wns  299 (1265)
T KOG1920|consen  228 DRE-GALNSTSEP------VEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERN-GLRHGEFVLPFPLDEKEVEELAWNS  299 (1265)
T ss_pred             ccc-chhhcccCc------ccccccceeecCCCCeEeeeeecCCCCcEEEEecC-CccccccccCCcccccchheeeecC
Confidence            100 000000000      01122468899999988875   356678898854 2211111111112 23389999999


Q ss_pred             CCCEEEE---eeCCCcEEEEECCC
Q 021399          202 DGSHFLT---GSLDKSAKLWDART  222 (313)
Q Consensus       202 ~~~~l~s---~s~dg~i~iwd~~~  222 (313)
                      +++.|+.   ......|++|-+..
T Consensus       300 ~sdiLAv~~~~~e~~~v~lwt~~N  323 (1265)
T KOG1920|consen  300 NSDILAVVTSNLENSLVQLWTTGN  323 (1265)
T ss_pred             CCCceeeeecccccceEEEEEecC
Confidence            9998887   44455599998765

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=97.63  E-value=0.039  Score=48.78  Aligned_cols=187  Identities=13%  Similarity=0.095  Sum_probs=99.7

Q ss_pred             CCEEEEeeCCCCeEEEeCCCCcEEEEecCCCCce-----EEEEECCCCCeEEEeeCCCcEEEEECCCCeEEEEecCCCCe
Q 021399           22 GDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAV-----WCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFNFDSPA   96 (313)
Q Consensus        22 g~~l~s~s~d~~i~iw~~~~~~~~~~~~~H~~~V-----~~~~~~~~~~~l~s~s~D~~v~vWd~~~~~~~~~~~~~~~~   96 (313)
                      +..++.+..++.+.-+|.++|+.+..+.......     .+...  .+..++.++.++.+...|..+++.++......+.
T Consensus       160 ~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP~v--~~~~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~  237 (394)
T PRK11138        160 DGLVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLRGESAPAT--AFGGAIVGGDNGRVSAVLMEQGQLIWQQRISQPT  237 (394)
T ss_pred             CCEEEEECCCCEEEEEEccCCCEeeeecCCCCcccccCCCCCEE--ECCEEEEEcCCCEEEEEEccCChhhheeccccCC
Confidence            3456667778899999999999988776432111     01111  1234666778899999999998877655322110


Q ss_pred             e--------EEEe---ecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEccCCCEEEEee
Q 021399           97 R--------SVDF---AVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAG  165 (313)
Q Consensus        97 ~--------~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~t~~  165 (313)
                      .        .+..   ..++.+.+...+.....      .+.      ..++.+-...  .+.....  ...+..+..++
T Consensus       238 ~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~a------ld~------~tG~~~W~~~--~~~~~~~--~~~~~~vy~~~  301 (394)
T PRK11138        238 GATEIDRLVDVDTTPVVVGGVVYALAYNGNLVA------LDL------RSGQIVWKRE--YGSVNDF--AVDGGRIYLVD  301 (394)
T ss_pred             CccchhcccccCCCcEEECCEEEEEEcCCeEEE------EEC------CCCCEEEeec--CCCccCc--EEECCEEEEEc
Confidence            0        0000   11333333332211100      000      0011110000  0000011  11345677788


Q ss_pred             CCCeEEEEECCCCceeeecccccCceeceEEEEECCCCCEEEEeeCCCcEEEEECCCCcEEEEEe
Q 021399          166 EDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYV  230 (313)
Q Consensus       166 ~d~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~  230 (313)
                      .++.+..+|..+++.+=+.... .+ ....+...  .+.+++.++.||.+...|.++++.+....
T Consensus       302 ~~g~l~ald~~tG~~~W~~~~~-~~-~~~~sp~v--~~g~l~v~~~~G~l~~ld~~tG~~~~~~~  362 (394)
T PRK11138        302 QNDRVYALDTRGGVELWSQSDL-LH-RLLTAPVL--YNGYLVVGDSEGYLHWINREDGRFVAQQK  362 (394)
T ss_pred             CCCeEEEEECCCCcEEEccccc-CC-CcccCCEE--ECCEEEEEeCCCEEEEEECCCCCEEEEEE
Confidence            8999999999888754222111 11 11111112  24678889999999999999999887764

>PRK02888 nitrous-oxide reductase; Validated

Probab=97.60  E-value=0.044  Score=50.20  Aligned_cols=53  Identities=15%  Similarity=0.100  Sum_probs=41.1

Q ss_pred             CCCCCEEEEeeCCCcEEEEECCC-----CcEEEEEecCCceeEEEeccCCCEEEEccccc
Q 021399          200 AADGSHFLTGSLDKSAKLWDART-----LELIKTYVTERPVNAVTMSPLLDHVVLGGGQD  254 (313)
Q Consensus       200 s~~~~~l~s~s~dg~i~iwd~~~-----~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~  254 (313)
                      .++|++...  .+++|.+.|.++     .+.+..+........+.++|++.+++++++-+
T Consensus       285 vkdGK~~~V--~gn~V~VID~~t~~~~~~~v~~yIPVGKsPHGV~vSPDGkylyVanklS  342 (635)
T PRK02888        285 VKAGKFKTI--GGSKVPVVDGRKAANAGSALTRYVPVPKNPHGVNTSPDGKYFIANGKLS  342 (635)
T ss_pred             hhCCCEEEE--CCCEEEEEECCccccCCcceEEEEECCCCccceEECCCCCEEEEeCCCC
Confidence            456665554  257899999998     46677777777889999999999999987644

>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=97.50  E-value=0.055  Score=47.06  Aligned_cols=253  Identities=13%  Similarity=0.091  Sum_probs=121.8

Q ss_pred             ccCCCEEEEe---------eCCCCeEEEeCCCCcEEEEecCCCCceEEEEECCCCCeEEEeeCCCcEEEEECCCCeEEEE
Q 021399           19 NKDGDLLFSC---------AKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFT   89 (313)
Q Consensus        19 s~~g~~l~s~---------s~d~~i~iw~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~v~vWd~~~~~~~~~   89 (313)
                      |||+++++..         +..+...|+|+++++....... ...+....|+|+|+.++-. .++.|.+++..+++..+.
T Consensus         1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~~~l~~~-~~~~~~~~~sP~g~~~~~v-~~~nly~~~~~~~~~~~l   78 (353)
T PF00930_consen    1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGEITPLTPP-PPKLQDAKWSPDGKYIAFV-RDNNLYLRDLATGQETQL   78 (353)
T ss_dssp             -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEEEESS-E-ETTBSEEEE-SSSTEEEEE-ETTEEEEESSTTSEEEES
T ss_pred             CCCCCeEEEEECcEEeeeeccceeEEEEecCCCceEECcCC-ccccccceeecCCCeeEEE-ecCceEEEECCCCCeEEe
Confidence            6788877763         2346788999999865433333 5677788999999977665 467899999877754432


Q ss_pred             ecCC------------------CCeeEEEeecCCeEEEEEC-CCceeccccceeeeeeeCCCCCCCceEEEecCCCC---
Q 021399           90 FNFD------------------SPARSVDFAVGDKLAVITT-DPFMELNSAIHVKRIARDPADQGGESVLILKGPQG---  147 (313)
Q Consensus        90 ~~~~------------------~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---  147 (313)
                      ....                  .....+.|+|+++.++... +.     .......+.            ......+   
T Consensus        79 T~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~d~-----~~v~~~~~~------------~~~~~~~~yp  141 (353)
T PF00930_consen   79 TTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRFDE-----REVPEYPLP------------DYSPPDSQYP  141 (353)
T ss_dssp             ES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEEE------TTS-EEEEE------------EESSSTESS-
T ss_pred             ccccceeEEcCccceeccccccccccceEECCCCCEEEEEEECC-----cCCceEEee------------ccCCccccCC
Confidence            2111                  1123455666655444321 10     000000000            0000000   


Q ss_pred             ceEEEEEccCCCEEEEeeCCC--eEEEEECCCCceeee--cccccCceeceEEEEECCCCCEEEEe--eCCC---cEEEE
Q 021399          148 RINRAVWGPLNRTIISAGEDA--IVRIWDTETGKLLKE--SDKETGHKKTITSLAKAADGSHFLTG--SLDK---SAKLW  218 (313)
Q Consensus       148 ~i~~~~~~~~~~~i~t~~~d~--~i~lwd~~~~~~~~~--~~~~~~h~~~v~~~~~s~~~~~l~s~--s~dg---~i~iw  218 (313)
                      .+..+.....      |....  .+.++|+.+++....  ......-...+..+.|.+++..|+..  ..+.   .+.+.
T Consensus       142 ~~~~~~YPk~------G~~np~v~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~  215 (353)
T PF00930_consen  142 EVESIRYPKA------GDPNPRVSLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLC  215 (353)
T ss_dssp             EEEEEE--BT------TS---EEEEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEETTEEEEEEEEETTSTEEEEEEE
T ss_pred             cccccccCCC------CCcCCceEEEEEECCCCcEEEeeeccccCCCccCcccceecCCCcEEEEEEcccCCCEEEEEEE
Confidence            1222222111      22223  355678877654211  10112235678899999999844433  3333   35566


Q ss_pred             ECCCCcEEEEEec--CCc---eeEEEec-cCCCEEEEcccccCceeEeeccCCCceeeeeeehhhhhhhccccccccce-
Q 021399          219 DARTLELIKTYVT--ERP---VNAVTMS-PLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPI-  291 (313)
Q Consensus       219 d~~~~~~~~~~~~--~~~---~~~~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V-  291 (313)
                      |..++++-.....  +.-   -....+. +++..+          +...+ +.|-.++..++...+... .+....-.| 
T Consensus       216 d~~tg~~~~~~~e~~~~Wv~~~~~~~~~~~~~~~~----------l~~s~-~~G~~hly~~~~~~~~~~-~lT~G~~~V~  283 (353)
T PF00930_consen  216 DASTGETRVVLEETSDGWVDVYDPPHFLGPDGNEF----------LWISE-RDGYRHLYLYDLDGGKPR-QLTSGDWEVT  283 (353)
T ss_dssp             EECTTTCEEEEEEESSSSSSSSSEEEE-TTTSSEE----------EEEEE-TTSSEEEEEEETTSSEEE-ESS-SSS-EE
T ss_pred             ECCCCceeEEEEecCCcceeeecccccccCCCCEE----------EEEEE-cCCCcEEEEEccccccee-ccccCceeec
Confidence            8877655333221  111   1122222 333333          33333 444445555554433321 122123344 


Q ss_pred             eEEEECCCCCeeEEEEE
Q 021399          292 NALAFNPDGKRYGFLLL  308 (313)
Q Consensus       292 ~~~~fspdgk~~~~~~~  308 (313)
                      .-+.++++++.+-|++.
T Consensus       284 ~i~~~d~~~~~iyf~a~  300 (353)
T PF00930_consen  284 SILGWDEDNNRIYFTAN  300 (353)
T ss_dssp             EEEEEECTSSEEEEEES
T ss_pred             ccceEcCCCCEEEEEec
Confidence            45888999998888764

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....

>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=97.49  E-value=0.065  Score=47.54  Aligned_cols=213  Identities=13%  Similarity=0.106  Sum_probs=104.2

Q ss_pred             EEEccCCCEEEEeeCC----------C-CeEEEeCCCCcEEEEecCCCCceEEEEECCCCCeEEEeeCCCcEEEEECCCC
Q 021399           16 LKYNKDGDLLFSCAKD----------H-TPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETG   84 (313)
Q Consensus        16 ~~fs~~g~~l~s~s~d----------~-~i~iw~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~v~vWd~~~~   84 (313)
                      ++.+|.|-.||....+          . .|+||+. .|+.+.++.--.+.+.++.|..+. .|+.-..||+++++|+...
T Consensus        34 va~a~~gGpIAi~~d~~k~~~~~~~~p~~I~iys~-sG~ll~~i~w~~~~iv~~~wt~~e-~LvvV~~dG~v~vy~~~G~  111 (410)
T PF04841_consen   34 VAVAPYGGPIAIIRDESKLVPVGSAKPNSIQIYSS-SGKLLSSIPWDSGRIVGMGWTDDE-ELVVVQSDGTVRVYDLFGE  111 (410)
T ss_pred             EEEcCCCceEEEEecCcccccccCCCCcEEEEECC-CCCEeEEEEECCCCEEEEEECCCC-eEEEEEcCCEEEEEeCCCc
Confidence            4556666666655443          1 4788874 566666654333889999998754 5556689999999998643


Q ss_pred             eEEEEecC---CCCeeEE-----EeecCCeEEEEECC-CceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEc
Q 021399           85 AQLFTFNF---DSPARSV-----DFAVGDKLAVITTD-PFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWG  155 (313)
Q Consensus        85 ~~~~~~~~---~~~~~~~-----~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~  155 (313)
                      . ......   ...+...     .+...+ +++...+ .+..+............+....  .......+........+.
T Consensus       112 ~-~fsl~~~i~~~~v~e~~i~~~~~~~~G-ivvLt~~~~~~~v~n~~~~~~~~~~~~~p~--~~~~~~~~~~~~~i~~l~  187 (410)
T PF04841_consen  112 F-QFSLGEEIEEEKVLECRIFAIWFYKNG-IVVLTGNNRFYVVNNIDEPVKLRRLPEIPG--LWTKFHWWPSWTVIPLLS  187 (410)
T ss_pred             e-eechhhhccccCcccccccccccCCCC-EEEECCCCeEEEEeCccccchhhccccCCC--cccccccccccccceEee
Confidence            3 211110   0111111     111122 3332222 2221111110000000000000  000000011000002233


Q ss_pred             cCCCEEEEeeCCCeEEEEECCCCceeeecccccCceeceEEEEECCCCCEEEEeeCCCcEEEEECCCCcEEEEEecC--C
Q 021399          156 PLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTE--R  233 (313)
Q Consensus       156 ~~~~~i~t~~~d~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~--~  233 (313)
                      .+....+....++.+.+.+....+.   +    ...+.+..++.||+|+++|.-..+|.+.+.+.+-.+.+.++...  .
T Consensus       188 ~~~~~~i~~~~g~~i~~i~~~~~~~---i----~~~~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~~~~~e~~~~~~~  260 (410)
T PF04841_consen  188 SDRVVEILLANGETIYIIDENSFKQ---I----DSDGPIIKIAVSPNGKFIALFTDSGNLWVVSSDFSEKLCEFDTDSKS  260 (410)
T ss_pred             cCcceEEEEecCCEEEEEEcccccc---c----cCCCCeEEEEECCCCCEEEEEECCCCEEEEECcccceeEEeecCcCC
Confidence            3444444455556666444322111   1    12357999999999999999999999999876656665555432  3


Q ss_pred             ceeEEEec
Q 021399          234 PVNAVTMS  241 (313)
Q Consensus       234 ~~~~~~~~  241 (313)
                      ....++|.
T Consensus       261 ~p~~~~WC  268 (410)
T PF04841_consen  261 PPKQMAWC  268 (410)
T ss_pred             CCcEEEEE
Confidence            34444443

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=97.39  E-value=0.015  Score=51.54  Aligned_cols=96  Identities=18%  Similarity=0.165  Sum_probs=59.2

Q ss_pred             EEEccCCCEEEEe-eCCC--eEEEEECCCCceeeecccccCceeceEEEEECCCCCEEEEeeC-CCc--EEEEECCCCcE
Q 021399          152 AVWGPLNRTIISA-GEDA--IVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSL-DKS--AKLWDARTLEL  225 (313)
Q Consensus       152 ~~~~~~~~~i~t~-~~d~--~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~-dg~--i~iwd~~~~~~  225 (313)
                      ..|+|+|+.++-+ ..|+  .|++.|+..+... ++....+.   -..=.|+|||+.|+-.+. .|.  |.+.|++....
T Consensus       243 P~fspDG~~l~f~~~rdg~~~iy~~dl~~~~~~-~Lt~~~gi---~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~  318 (425)
T COG0823         243 PAFSPDGSKLAFSSSRDGSPDIYLMDLDGKNLP-RLTNGFGI---NTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQV  318 (425)
T ss_pred             ccCCCCCCEEEEEECCCCCccEEEEcCCCCcce-ecccCCcc---ccCccCCCCCCEEEEEeCCCCCcceEEECCCCCce
Confidence            4588988877654 3444  4667788766632 23322222   225579999999886654 443  66667776665


Q ss_pred             EEEEecCCceeEEEeccCCCEEEEcc
Q 021399          226 IKTYVTERPVNAVTMSPLLDHVVLGG  251 (313)
Q Consensus       226 ~~~~~~~~~~~~~~~~p~~~~~~~~~  251 (313)
                      .+.......-..-.|+|+++.+++..
T Consensus       319 ~riT~~~~~~~~p~~SpdG~~i~~~~  344 (425)
T COG0823         319 TRLTFSGGGNSNPVWSPDGDKIVFES  344 (425)
T ss_pred             eEeeccCCCCcCccCCCCCCEEEEEe
Confidence            33322222222677899999988876

>PRK02888 nitrous-oxide reductase; Validated

Probab=97.36  E-value=0.029  Score=51.34  Aligned_cols=182  Identities=12%  Similarity=0.166  Sum_probs=103.0

Q ss_pred             eEEEEccCCCEEEEeeCCCCeEEEeCCCCcEEEEecCCCCceEEEEE--------CCCCCeEEEeeCCCcEEEEECCC--
Q 021399           14 TYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDV--------SRDSMTLITGSADQTAKLWNVET--   83 (313)
Q Consensus        14 ~~~~fs~~g~~l~s~s~d~~i~iw~~~~~~~~~~~~~H~~~V~~~~~--------~~~~~~l~s~s~D~~v~vWd~~~--   83 (313)
                      ..+.++|+|+++++.+.+       .+.+..+..+..-+.. ..+.|        .++|+....  .+++|.+.|..+  
T Consensus       238 d~v~~spdGk~afvTsyN-------sE~G~tl~em~a~e~d-~~vvfni~~iea~vkdGK~~~V--~gn~V~VID~~t~~  307 (635)
T PRK02888        238 DNVDTDYDGKYAFSTCYN-------SEEGVTLAEMMAAERD-WVVVFNIARIEEAVKAGKFKTI--GGSKVPVVDGRKAA  307 (635)
T ss_pred             ccceECCCCCEEEEeccC-------cccCcceeeeccccCc-eEEEEchHHHHHhhhCCCEEEE--CCCEEEEEECCccc
Confidence            457788888888887642       2223233333221111 22333        346665544  367899999988  


Q ss_pred             ---CeEEEEecCCCCeeEEEeecCCeEEEEECCCceeccccceeeeeee------CCCCCCCceEEEecCCCCceEEEEE
Q 021399           84 ---GAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIAR------DPADQGGESVLILKGPQGRINRAVW  154 (313)
Q Consensus        84 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~i~~~~~  154 (313)
                         .+.+..+........+.++|+++.+++....    +....+.++..      +..+.....+...+-..++. ...|
T Consensus       308 ~~~~~v~~yIPVGKsPHGV~vSPDGkylyVankl----S~tVSVIDv~k~k~~~~~~~~~~~~vvaevevGlGPL-HTaF  382 (635)
T PRK02888        308 NAGSALTRYVPVPKNPHGVNTSPDGKYFIANGKL----SPTVTVIDVRKLDDLFDGKIKPRDAVVAEPELGLGPL-HTAF  382 (635)
T ss_pred             cCCcceEEEEECCCCccceEECCCCCEEEEeCCC----CCcEEEEEChhhhhhhhccCCccceEEEeeccCCCcc-eEEE
Confidence               4566666777788889999998887776531    11112222111      11111111222222233333 3557


Q ss_pred             ccCCCEEEEeeCCCeEEEEECCC----------Cceeeec--ccccCceeceEEEEECCCCCEEEEee
Q 021399          155 GPLNRTIISAGEDAIVRIWDTET----------GKLLKES--DKETGHKKTITSLAKAADGSHFLTGS  210 (313)
Q Consensus       155 ~~~~~~i~t~~~d~~i~lwd~~~----------~~~~~~~--~~~~~h~~~v~~~~~s~~~~~l~s~s  210 (313)
                      .++|+.+.|---|..|-.||+..          ...+.++  ....+|......-.-.+||++|++..
T Consensus       383 Dg~G~aytslf~dsqv~kwn~~~a~~~~~g~~~~~v~~k~dV~y~pgh~~~~~g~t~~~dgk~l~~~n  450 (635)
T PRK02888        383 DGRGNAYTTLFLDSQIVKWNIEAAIRAYKGEKVDPIVQKLDVHYQPGHNHASMGETKEADGKWLVSLN  450 (635)
T ss_pred             CCCCCEEEeEeecceeEEEehHHHHHHhccccCCcceecccCCCccceeeecCCCcCCCCCCEEEEcc
Confidence            88888888888999999999875          2233332  22345655544445678888888764

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=97.28  E-value=0.033  Score=49.69  Aligned_cols=79  Identities=14%  Similarity=0.129  Sum_probs=45.4

Q ss_pred             CCEEEEeeCCCeEEEEECCCCceeeecccccCceeceEEEEECCCCCEEEEeeCCCcEEEEECCCC-----------cEE
Q 021399          158 NRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTL-----------ELI  226 (313)
Q Consensus       158 ~~~i~t~~~d~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~dg~i~iwd~~~~-----------~~~  226 (313)
                      |..++..+. +.|.+||..+++.++++..    . .|..+.|+++|++++-.+.+ .+.+++.+..           ..+
T Consensus       117 G~LL~~~~~-~~i~~yDw~~~~~i~~i~v----~-~vk~V~Ws~~g~~val~t~~-~i~il~~~~~~~~~~~~~g~e~~f  189 (443)
T PF04053_consen  117 GNLLGVKSS-DFICFYDWETGKLIRRIDV----S-AVKYVIWSDDGELVALVTKD-SIYILKYNLEAVAAIPEEGVEDAF  189 (443)
T ss_dssp             SSSEEEEET-TEEEEE-TTT--EEEEESS------E-EEEEE-TTSSEEEEE-S--SEEEEEE-HHHHHHBTTTB-GGGE
T ss_pred             CcEEEEECC-CCEEEEEhhHcceeeEEec----C-CCcEEEEECCCCEEEEEeCC-eEEEEEecchhcccccccCchhce
Confidence            455555554 4899999999999888752    2 38999999999999988866 5667654332           022


Q ss_pred             EEEec-CCceeEEEeccC
Q 021399          227 KTYVT-ERPVNAVTMSPL  243 (313)
Q Consensus       227 ~~~~~-~~~~~~~~~~p~  243 (313)
                      ..+.. ...|.+.+|.-+
T Consensus       190 ~~~~E~~~~IkSg~W~~d  207 (443)
T PF04053_consen  190 ELIHEISERIKSGCWVED  207 (443)
T ss_dssp             EEEEEE-S--SEEEEETT
T ss_pred             EEEEEecceeEEEEEEcC
Confidence            22222 456778887654

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2

Probab=97.26  E-value=0.076  Score=43.39  Aligned_cols=186  Identities=13%  Similarity=0.048  Sum_probs=110.5

Q ss_pred             ccceeEEEEccCCCEEEEeeCCC--CeEEEeCCCCcEEEEecCCC-CceEEEEECCCCCeEEEeeCCCcEEEEECCCCeE
Q 021399           10 ERPLTYLKYNKDGDLLFSCAKDH--TPTVWFADNGERLGTYRGHN-GAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQ   86 (313)
Q Consensus        10 ~~~v~~~~fs~~g~~l~s~s~d~--~i~iw~~~~~~~~~~~~~H~-~~V~~~~~~~~~~~l~s~s~D~~v~vWd~~~~~~   86 (313)
                      ....+.+.|..+|.++-|.+.-|  .|+.+|+++++......-.. -.=..++.. ++++..-.=.+++..+||..+-+.
T Consensus        44 ~aFTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~-~d~l~qLTWk~~~~f~yd~~tl~~  122 (264)
T PF05096_consen   44 TAFTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITIL-GDKLYQLTWKEGTGFVYDPNTLKK  122 (264)
T ss_dssp             T-EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEE-TTEEEEEESSSSEEEEEETTTTEE
T ss_pred             cccCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEE-CCEEEEEEecCCeEEEEccccceE
Confidence            34466899988899999998776  68889999998765443211 111223333 233333345678888999988776


Q ss_pred             EEEecCCCCeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEccCCCEEEEeeC
Q 021399           87 LFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGE  166 (313)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~t~~~  166 (313)
                      +..+.+....                            |-                         ++  .++..++....
T Consensus       123 ~~~~~y~~EG----------------------------WG-------------------------Lt--~dg~~Li~SDG  147 (264)
T PF05096_consen  123 IGTFPYPGEG----------------------------WG-------------------------LT--SDGKRLIMSDG  147 (264)
T ss_dssp             EEEEE-SSS------------------------------E-------------------------EE--ECSSCEEEE-S
T ss_pred             EEEEecCCcc----------------------------eE-------------------------EE--cCCCEEEEECC
Confidence            6554332111                            00                         11  12344666666


Q ss_pred             CCeEEEEECCCCceeeecccccCc--eeceEEEEECCCCCEEEEeeCCCcEEEEECCCCcEEEEEec-------------
Q 021399          167 DAIVRIWDTETGKLLKESDKETGH--KKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVT-------------  231 (313)
Q Consensus       167 d~~i~lwd~~~~~~~~~~~~~~~h--~~~v~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~-------------  231 (313)
                      ...|+.+|.++.+..+++......  -..++.+.+- +|...|-.=....|...|.++|+.+..+..             
T Consensus       148 S~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i-~G~IyANVW~td~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~  226 (264)
T PF05096_consen  148 SSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYI-NGKIYANVWQTDRIVRIDPETGKVVGWIDLSGLRPEVGRDKSR  226 (264)
T ss_dssp             SSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEE-TTEEEEEETTSSEEEEEETTT-BEEEEEE-HHHHHHHTSTTST
T ss_pred             ccceEEECCcccceEEEEEEEECCEECCCcEeEEEE-cCEEEEEeCCCCeEEEEeCCCCeEEEEEEhhHhhhcccccccc
Confidence            778999998877766655432111  1235556664 565555555566788889999998876621             


Q ss_pred             ---CCceeEEEeccCCCEEEEccc
Q 021399          232 ---ERPVNAVTMSPLLDHVVLGGG  252 (313)
Q Consensus       232 ---~~~~~~~~~~p~~~~~~~~~~  252 (313)
                         ....|.+|+.|..+.++++|.
T Consensus       227 ~~~~dVLNGIAyd~~~~~l~vTGK  250 (264)
T PF05096_consen  227 QPDDDVLNGIAYDPETDRLFVTGK  250 (264)
T ss_dssp             --TTS-EEEEEEETTTTEEEEEET
T ss_pred             cccCCeeEeEeEeCCCCEEEEEeC
Confidence               124789999999999998875

3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.

>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain

Probab=97.24  E-value=0.0011  Score=38.64  Aligned_cols=36  Identities=17%  Similarity=0.146  Sum_probs=30.6

Q ss_pred             cccccceeEEEEccCCCEEEEeeCCCCeEEEeCCCCc
Q 021399            7 KGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGE   43 (313)
Q Consensus         7 ~~h~~~v~~~~fs~~g~~l~s~s~d~~i~iw~~~~~~   43 (313)
                      +.-...|.+++|+|+.++||.+..||.|.++.+ +++
T Consensus         8 k~l~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~q   43 (47)
T PF12894_consen    8 KNLPSRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQ   43 (47)
T ss_pred             cCCCCcEEEEEECCCCCEEEEEECCCeEEEEEC-CCc
Confidence            444557999999999999999999999999988 443

>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins

Probab=97.18  E-value=0.011  Score=55.81  Aligned_cols=92  Identities=16%  Similarity=0.150  Sum_probs=62.6

Q ss_pred             EEEeeCCCeEEEEECCCCc--eeeecccccCceeceEEEEECCCCCEEEEeeCCCcEEEEECCCCcEEEEE-e-cCCcee
Q 021399          161 IISAGEDAIVRIWDTETGK--LLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTY-V-TERPVN  236 (313)
Q Consensus       161 i~t~~~d~~i~lwd~~~~~--~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~-~-~~~~~~  236 (313)
                      .+.|-.+..|..||++-..  ++......-.......|++-+.+| +||.|+.+|.||+||- .+...++. . ...+|.
T Consensus       545 tflGls~n~lfriDpR~~~~k~v~~~~k~Y~~~~~Fs~~aTt~~G-~iavgs~~G~IRLyd~-~g~~AKT~lp~lG~pI~  622 (794)
T PF08553_consen  545 TFLGLSDNSLFRIDPRLSGNKLVDSQSKQYSSKNNFSCFATTEDG-YIAVGSNKGDIRLYDR-LGKRAKTALPGLGDPII  622 (794)
T ss_pred             eEEEECCCceEEeccCCCCCceeeccccccccCCCceEEEecCCc-eEEEEeCCCcEEeecc-cchhhhhcCCCCCCCee
Confidence            3456677888999987532  222111111234567888888777 5999999999999994 34333332 2 256899


Q ss_pred             EEEeccCCCEEEEccccc
Q 021399          237 AVTMSPLLDHVVLGGGQD  254 (313)
Q Consensus       237 ~~~~~p~~~~~~~~~~~~  254 (313)
                      .+..+.+|..+++++...
T Consensus       623 ~iDvt~DGkwilaTc~ty  640 (794)
T PF08553_consen  623 GIDVTADGKWILATCKTY  640 (794)
T ss_pred             EEEecCCCcEEEEeecce
Confidence            999999999999887544

Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=97.12  E-value=0.11  Score=42.50  Aligned_cols=202  Identities=13%  Similarity=0.142  Sum_probs=99.7

Q ss_pred             cccccccceeEEEEccCCCEEEEee-CCCCeEEEeCCCCcEEEEecCC-CCceEEEEECCCCCeEEEeeCCCcEEEEECC
Q 021399            5 LMKGHERPLTYLKYNKDGDLLFSCA-KDHTPTVWFADNGERLGTYRGH-NGAVWCCDVSRDSMTLITGSADQTAKLWNVE   82 (313)
Q Consensus         5 ~l~~h~~~v~~~~fs~~g~~l~s~s-~d~~i~iw~~~~~~~~~~~~~H-~~~V~~~~~~~~~~~l~s~s~D~~v~vWd~~   82 (313)
                      .|.+=.+.+..++|+|+.+.|++.. ..+.|...+. +|+.+..+.-. -+..-.+++.-++.++++--+++.+.+.++.
T Consensus        16 ~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~-~G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~~   94 (248)
T PF06977_consen   16 PLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSL-DGKVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIFTID   94 (248)
T ss_dssp             E-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEET-T--EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEEEE-
T ss_pred             ECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcC-CCCEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEEEEe
Confidence            4556666799999999877666554 4566655664 57776665432 2456778887777776665568888887764


Q ss_pred             CCeEEEEecCCCCeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEccCCCEEE
Q 021399           83 TGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTII  162 (313)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~  162 (313)
                      .....      .....+                         ..+...          ....++..+-.++|.|.++.++
T Consensus        95 ~~~~~------~~~~~~-------------------------~~~~l~----------~~~~~N~G~EGla~D~~~~~L~  133 (248)
T PF06977_consen   95 DDTTS------LDRADV-------------------------QKISLG----------FPNKGNKGFEGLAYDPKTNRLF  133 (248)
T ss_dssp             ---TT--------EEEE-------------------------EEEE-------------S---SS--EEEEEETTTTEEE
T ss_pred             ccccc------cchhhc-------------------------eEEecc----------cccCCCcceEEEEEcCCCCEEE
Confidence            32100      000000                         000000          0001223355677888777777


Q ss_pred             EeeCCCeEEEEECCC---Cceeee-----cccccCceeceEEEEECCCCC-EEEEeeCCCcEEEEECCCCcEEEEEecC-
Q 021399          163 SAGEDAIVRIWDTET---GKLLKE-----SDKETGHKKTITSLAKAADGS-HFLTGSLDKSAKLWDARTLELIKTYVTE-  232 (313)
Q Consensus       163 t~~~d~~i~lwd~~~---~~~~~~-----~~~~~~h~~~v~~~~~s~~~~-~l~s~s~dg~i~iwd~~~~~~~~~~~~~-  232 (313)
                      .+-+..-.+|+.+..   ...+..     .......-..+.+++++|... .++....+..|..+| .+++++..+.-. 
T Consensus       134 v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~S~l~~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~  212 (248)
T PF06977_consen  134 VAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDLSGLSYDPRTGHLLILSDESRLLLELD-RQGRVVSSLSLDR  212 (248)
T ss_dssp             EEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS---EEEEETTTTEEEEEETTTTEEEEE--TT--EEEEEE-ST
T ss_pred             EEeCCCChhhEEEccccCccceeeccccccccccceeccccceEEcCCCCeEEEEECCCCeEEEEC-CCCCEEEEEEeCC
Confidence            776665555665432   111110     000111334578888888755 455555677788888 567776665422 


Q ss_pred             ---------CceeEEEeccCCCEEEE
Q 021399          233 ---------RPVNAVTMSPLLDHVVL  249 (313)
Q Consensus       233 ---------~~~~~~~~~p~~~~~~~  249 (313)
                               .+...++|.++|...++
T Consensus       213 g~~gl~~~~~QpEGIa~d~~G~LYIv  238 (248)
T PF06977_consen  213 GFHGLSKDIPQPEGIAFDPDGNLYIV  238 (248)
T ss_dssp             TGGG-SS---SEEEEEE-TT--EEEE
T ss_pred             cccCcccccCCccEEEECCCCCEEEE
Confidence                     25788999998865444

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]

Probab=97.11  E-value=0.0067  Score=55.06  Aligned_cols=123  Identities=13%  Similarity=0.130  Sum_probs=86.8

Q ss_pred             cccceeEEEEccCCCEEEEeeCCCCeEEEeCCCCcE-EEEecCCCCceEEEEECCCCCeEEEeeCCCcEEEEECCCCeEE
Q 021399            9 HERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGER-LGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQL   87 (313)
Q Consensus         9 h~~~v~~~~fs~~g~~l~s~s~d~~i~iw~~~~~~~-~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~v~vWd~~~~~~~   87 (313)
                      |...|.--+++..+++|+-|+.-|.+.+|+-..+.. +....+-.+.+..+.++++..++|.|+..|.|-++-+..+.. 
T Consensus        32 ~~~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p-  110 (726)
T KOG3621|consen   32 FPARVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELP-  110 (726)
T ss_pred             CcceEEEEEeecCCceEEEecccceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCC-
Confidence            444566677888999999999999999998777764 334455566677788898888888888888888876654211 


Q ss_pred             EEecCCCCeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEccCCCEEEEeeCC
Q 021399           88 FTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGED  167 (313)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~t~~~d  167 (313)
                                      .+.+.+..                             ..+.|..+|+.+.|++++..+.+|...
T Consensus       111 ----------------~~~~~~t~-----------------------------~d~~~~~rVTal~Ws~~~~k~ysGD~~  145 (726)
T KOG3621|consen  111 ----------------RDLDYVTP-----------------------------CDKSHKCRVTALEWSKNGMKLYSGDSQ  145 (726)
T ss_pred             ----------------Ccceeecc-----------------------------ccccCCceEEEEEecccccEEeecCCC
Confidence                            01111100                             001256678888899888888888888


Q ss_pred             CeEEEEECCC
Q 021399          168 AIVRIWDTET  177 (313)
Q Consensus       168 ~~i~lwd~~~  177 (313)
                      |+|.+-.+.+
T Consensus       146 Gkv~~~~L~s  155 (726)
T KOG3621|consen  146 GKVVLTELDS  155 (726)
T ss_pred             ceEEEEEech
Confidence            8887776655

>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases

Probab=97.10  E-value=0.21  Score=45.49  Aligned_cols=71  Identities=18%  Similarity=0.164  Sum_probs=50.6

Q ss_pred             CCEEEEeeCCCCeEEEeCCCCcEEEEecCCCC------ceE--EEEECCCCCeEEEeeCCCcEEEEECCCCeEEEEecCC
Q 021399           22 GDLLFSCAKDHTPTVWFADNGERLGTYRGHNG------AVW--CCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFNFD   93 (313)
Q Consensus        22 g~~l~s~s~d~~i~iw~~~~~~~~~~~~~H~~------~V~--~~~~~~~~~~l~s~s~D~~v~vWd~~~~~~~~~~~~~   93 (313)
                      +..++.++.++.+.-.|.++++.+.+++-...      .+.  .+++. ++..++.++.|+.|.-+|.++++.++.....
T Consensus        61 ~g~vy~~~~~g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~-~~~~V~v~~~~g~v~AlD~~TG~~~W~~~~~  139 (488)
T cd00216          61 DGDMYFTTSHSALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYW-DPRKVFFGTFDGRLVALDAETGKQVWKFGNN  139 (488)
T ss_pred             CCEEEEeCCCCcEEEEECCCChhhceeCCCCCccccccccccCCcEEc-cCCeEEEecCCCeEEEEECCCCCEeeeecCC
Confidence            45677788889999999999998877754332      111  11111 2256777888999999999999999887654

The alignment model contains an 8-bladed beta-propeller.

>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A

Probab=97.09  E-value=0.16  Score=43.91  Aligned_cols=232  Identities=16%  Similarity=0.136  Sum_probs=89.9

Q ss_pred             EEEEccCCCEEEE-eeCCCCeEEE--eCCCCcEEEEecCCCC-ceEEEEECCCCCeEEEeeCCCcEEEEECCCCeEEEEe
Q 021399           15 YLKYNKDGDLLFS-CAKDHTPTVW--FADNGERLGTYRGHNG-AVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTF   90 (313)
Q Consensus        15 ~~~fs~~g~~l~s-~s~d~~i~iw--~~~~~~~~~~~~~H~~-~V~~~~~~~~~~~l~s~s~D~~v~vWd~~~~~~~~~~   90 (313)
                      .=+|.+||++|+- +..|+.-.+|  |+++++.. +|..+.+ ......++|+++.++=......++--|+.+.+....+
T Consensus        40 ~~~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~-QLTdg~g~~~~g~~~s~~~~~~~Yv~~~~~l~~vdL~T~e~~~vy  118 (386)
T PF14583_consen   40 QNCFTDDGRKLLFASDFDGNRNLYLLDLATGEIT-QLTDGPGDNTFGGFLSPDDRALYYVKNGRSLRRVDLDTLEERVVY  118 (386)
T ss_dssp             S--B-TTS-EEEEEE-TTSS-EEEEEETTT-EEE-E---SS-B-TTT-EE-TTSSEEEEEETTTEEEEEETTT--EEEEE
T ss_pred             CCCcCCCCCEEEEEeccCCCcceEEEEcccCEEE-ECccCCCCCccceEEecCCCeEEEEECCCeEEEEECCcCcEEEEE
Confidence            3478999965544 4456665555  77777543 4443332 2234556677776543444567777899888776665


Q ss_pred             cCCCCee-EEEee--cCCeEEEEEC-CCc-e-ecccccee---------eeeeeCCCCCCCceEEEecCCCCceEEEEEc
Q 021399           91 NFDSPAR-SVDFA--VGDKLAVITT-DPF-M-ELNSAIHV---------KRIARDPADQGGESVLILKGPQGRINRAVWG  155 (313)
Q Consensus        91 ~~~~~~~-~~~~~--~~~~~~~~~~-~~~-~-~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~  155 (313)
                      .....-. +..+.  .+...++... ... . .+......         ..+..- ....++....+. -...+.-+.++
T Consensus       119 ~~p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~i-dl~tG~~~~v~~-~~~wlgH~~fs  196 (386)
T PF14583_consen  119 EVPDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTI-DLKTGERKVVFE-DTDWLGHVQFS  196 (386)
T ss_dssp             E--TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEE-ETTT--EEEEEE-ESS-EEEEEEE
T ss_pred             ECCcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEE-ECCCCceeEEEe-cCccccCcccC
Confidence            5443322 23332  2333333221 000 0 00000000         000000 001122222222 12344567788


Q ss_pred             cCCCEEE-Eee---CCCe-EEEEECC-CCceeeecccccCceeceEEEEECCCCCEEEEee-----CCCcEEEEECCCCc
Q 021399          156 PLNRTII-SAG---EDAI-VRIWDTE-TGKLLKESDKETGHKKTITSLAKAADGSHFLTGS-----LDKSAKLWDARTLE  224 (313)
Q Consensus       156 ~~~~~i~-t~~---~d~~-i~lwd~~-~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s-----~dg~i~iwd~~~~~  224 (313)
                      |....++ -|-   .+.. -|+|-++ .+...+.+.... ....+.-=.|.+||+.|.--+     .+..|.-+|+++++
T Consensus       197 P~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~-~~e~~gHEfw~~DG~~i~y~~~~~~~~~~~i~~~d~~t~~  275 (386)
T PF14583_consen  197 PTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRM-EGESVGHEFWVPDGSTIWYDSYTPGGQDFWIAGYDPDTGE  275 (386)
T ss_dssp             TTEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS----TTEEEEEEEE-TTSS-EEEEEEETTT--EEEEEE-TTT--
T ss_pred             CCCCCEEEEeccCCcceeceEEEEEEcCCCcceeeecCC-CCcccccccccCCCCEEEEEeecCCCCceEEEeeCCCCCC
Confidence            7665443 443   2221 3566543 233333333222 234455567999999765432     24456777888876


Q ss_pred             EEEEEecCCceeEEEeccCCCEEEEccc
Q 021399          225 LIKTYVTERPVNAVTMSPLLDHVVLGGG  252 (313)
Q Consensus       225 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~  252 (313)
                      .......+.. .-.--++++. ++++-|
T Consensus       276 ~~~~~~~p~~-~H~~ss~Dg~-L~vGDG  301 (386)
T PF14583_consen  276 RRRLMEMPWC-SHFMSSPDGK-LFVGDG  301 (386)
T ss_dssp             EEEEEEE-SE-EEEEE-TTSS-EEEEEE
T ss_pred             ceEEEeCCce-eeeEEcCCCC-EEEecC
Confidence            5432223321 1222355555 344433

>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.05  E-value=0.014  Score=51.55  Aligned_cols=146  Identities=20%  Similarity=0.290  Sum_probs=85.2

Q ss_pred             eEEEeeCCCcEEEEECCCCeEEEEecCCCCeeEEEeecCCeEEEEECCC-ceeccccceeeeee-eCCCCCCCceEEEec
Q 021399           66 TLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDP-FMELNSAIHVKRIA-RDPADQGGESVLILK  143 (313)
Q Consensus        66 ~l~s~s~D~~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~  143 (313)
                      +|.++..-..++--|++.|+.+....+...+.-+++.|+.+..-..... +..++.    ..+. .++...+...+...+
T Consensus       348 il~~~~~~~~l~klDIE~GKIVeEWk~~~di~mv~~t~d~K~~Ql~~e~TlvGLs~----n~vfriDpRv~~~~kl~~~q  423 (644)
T KOG2395|consen  348 ILMDGGEQDKLYKLDIERGKIVEEWKFEDDINMVDITPDFKFAQLTSEQTLVGLSD----NSVFRIDPRVQGKNKLAVVQ  423 (644)
T ss_pred             EeeCCCCcCcceeeecccceeeeEeeccCCcceeeccCCcchhcccccccEEeecC----CceEEecccccCcceeeeee
Confidence            5566666677777899999998888777666666676654443222111 111111    1111 122222222333334


Q ss_pred             CCCC----ceEEEEEccCCCEEEEeeCCCeEEEEECCCCceeeecccccCceeceEEEEECCCCCEEEEeeCCCcEEEEE
Q 021399          144 GPQG----RINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWD  219 (313)
Q Consensus       144 ~~~~----~i~~~~~~~~~~~i~t~~~d~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~dg~i~iwd  219 (313)
                      +|+-    ...+.+-. ...+|+.||.+|.|||||. .+...++.  .++-...|..+..+.+|++|+..+ +..+.+.|
T Consensus       424 ~kqy~~k~nFsc~aTT-~sG~IvvgS~~GdIRLYdr-i~~~AKTA--lPgLG~~I~hVdvtadGKwil~Tc-~tyLlLi~  498 (644)
T KOG2395|consen  424 SKQYSTKNNFSCFATT-ESGYIVVGSLKGDIRLYDR-IGRRAKTA--LPGLGDAIKHVDVTADGKWILATC-KTYLLLID  498 (644)
T ss_pred             ccccccccccceeeec-CCceEEEeecCCcEEeehh-hhhhhhhc--ccccCCceeeEEeeccCcEEEEec-ccEEEEEE
Confidence            4431    12222222 3457999999999999997 33333332  246778999999999999887665 45566665


Q ss_pred             C
Q 021399          220 A  220 (313)
Q Consensus       220 ~  220 (313)
                      +
T Consensus       499 t  499 (644)
T KOG2395|consen  499 T  499 (644)
T ss_pred             E
Confidence            4

>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1

Probab=97.03  E-value=0.16  Score=43.02  Aligned_cols=254  Identities=15%  Similarity=0.119  Sum_probs=128.2

Q ss_pred             CCeEEEeCCCCcEEEEecCCCCceEEEEECCCCCeEEEee----------CCCcEEEEECCCCeEEEEecCCC-------
Q 021399           32 HTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGS----------ADQTAKLWNVETGAQLFTFNFDS-------   94 (313)
Q Consensus        32 ~~i~iw~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s----------~D~~v~vWd~~~~~~~~~~~~~~-------   94 (313)
                      +++.|.|.++++.+..+.+-  ..-.+.++|+++.+++++          +.-.|.+||..+-+....+....       
T Consensus        17 ~rv~viD~d~~k~lGmi~~g--~~~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~~~   94 (342)
T PF06433_consen   17 SRVYVIDADSGKLLGMIDTG--FLGNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQVV   94 (342)
T ss_dssp             EEEEEEETTTTEEEEEEEEE--SSEEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B--BS
T ss_pred             ceEEEEECCCCcEEEEeecc--cCCceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchheec
Confidence            47899999999998888642  222356789999887743          44569999999877665443322       


Q ss_pred             -CeeEEEeecCCeEEEEEC-CCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEccCCCEEEEeeCCCeEEE
Q 021399           95 -PARSVDFAVGDKLAVITT-DPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRI  172 (313)
Q Consensus        95 -~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~t~~~d~~i~l  172 (313)
                       ......++++++.+.+.+ .+...    +.+-++.      ..+.+..+.-+  .+..+.-.+ .+.|.+-+.||.+.-
T Consensus        95 ~~~~~~~ls~dgk~~~V~N~TPa~S----VtVVDl~------~~kvv~ei~~P--GC~~iyP~~-~~~F~~lC~DGsl~~  161 (342)
T PF06433_consen   95 PYKNMFALSADGKFLYVQNFTPATS----VTVVDLA------AKKVVGEIDTP--GCWLIYPSG-NRGFSMLCGDGSLLT  161 (342)
T ss_dssp             --GGGEEE-TTSSEEEEEEESSSEE----EEEEETT------TTEEEEEEEGT--SEEEEEEEE-TTEEEEEETTSCEEE
T ss_pred             ccccceEEccCCcEEEEEccCCCCe----EEEEECC------CCceeeeecCC--CEEEEEecC-CCceEEEecCCceEE
Confidence             122334555555554421 11111    1111110      11111111110  111111112 245777788898888


Q ss_pred             EECC-CCceeeeccc--ccCceeceEEEEECCCCCEEEEeeCCCcEEEEECCCCcEE--EEEecC-----------Ccee
Q 021399          173 WDTE-TGKLLKESDK--ETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELI--KTYVTE-----------RPVN  236 (313)
Q Consensus       173 wd~~-~~~~~~~~~~--~~~h~~~v~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~--~~~~~~-----------~~~~  236 (313)
                      ..+. .|+..++...  ..........-++...+..++=-+.+|.|+--|+......  ..+..-           .-..
T Consensus       162 v~Ld~~Gk~~~~~t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q  241 (342)
T PF06433_consen  162 VTLDADGKEAQKSTKVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQ  241 (342)
T ss_dssp             EEETSTSSEEEEEEEESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS
T ss_pred             EEECCCCCEeEeeccccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCccee
Confidence            8775 4444322110  1111112223334445555555778888888887665432  222110           0122


Q ss_pred             EEEeccCCCEEEEcccccCceeEeeccCCCceeeeeeehhhhhhhccccccccceeEEEECCCCCeeEE
Q 021399          237 AVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKRYGF  305 (313)
Q Consensus       237 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~fspdgk~~~~  305 (313)
                      -+++++..+.+++.-- .+   .-+-+....-|++.+|..+.+++..+.. ..++.+|+.+.|.|=+-|
T Consensus       242 ~~A~~~~~~rlyvLMh-~g---~~gsHKdpgteVWv~D~~t~krv~Ri~l-~~~~~Si~Vsqd~~P~L~  305 (342)
T PF06433_consen  242 LIAYHAASGRLYVLMH-QG---GEGSHKDPGTEVWVYDLKTHKRVARIPL-EHPIDSIAVSQDDKPLLY  305 (342)
T ss_dssp             -EEEETTTTEEEEEEE-E-----TT-TTS-EEEEEEEETTTTEEEEEEEE-EEEESEEEEESSSS-EEE
T ss_pred             eeeeccccCeEEEEec-CC---CCCCccCCceEEEEEECCCCeEEEEEeC-CCccceEEEccCCCcEEE
Confidence            3455554444443210 00   0123444556788899988888877652 457889999999875444

4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=97.01  E-value=0.0079  Score=55.93  Aligned_cols=113  Identities=12%  Similarity=0.169  Sum_probs=79.7

Q ss_pred             ccceeEEEEccCCCEEEEee----CCCCeEEEeCCCCcEEEEecCCCCceEEEEECCCCCeEEEeeCCCcEEEEECCCCe
Q 021399           10 ERPLTYLKYNKDGDLLFSCA----KDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGA   85 (313)
Q Consensus        10 ~~~v~~~~fs~~g~~l~s~s----~d~~i~iw~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~v~vWd~~~~~   85 (313)
                      .+..+-.+|+|.-++++.++    ..|.|.|+ .++|++..... ..-.+++++|+|..-.|++|-.-|.+.+|...+.+
T Consensus        15 davsti~SWHPsePlfAVA~fS~er~GSVtIf-adtGEPqr~Vt-~P~hatSLCWHpe~~vLa~gwe~g~~~v~~~~~~e   92 (1416)
T KOG3617|consen   15 DAVSTISSWHPSEPLFAVASFSPERGGSVTIF-ADTGEPQRDVT-YPVHATSLCWHPEEFVLAQGWEMGVSDVQKTNTTE   92 (1416)
T ss_pred             cccccccccCCCCceeEEEEecCCCCceEEEE-ecCCCCCcccc-cceehhhhccChHHHHHhhccccceeEEEecCCce
Confidence            33445678999999999886    36888888 46666422111 11124679999988788888888889999865433


Q ss_pred             EEEEecCCCCeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEccCCCEEEEee
Q 021399           86 QLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAG  165 (313)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~t~~  165 (313)
                      .-                                                    .....|..+|..+.|+++|..++|+.
T Consensus        93 ~h----------------------------------------------------tv~~th~a~i~~l~wS~~G~~l~t~d  120 (1416)
T KOG3617|consen   93 TH----------------------------------------------------TVVETHPAPIQGLDWSHDGTVLMTLD  120 (1416)
T ss_pred             ee----------------------------------------------------eeccCCCCCceeEEecCCCCeEEEcC
Confidence            21                                                    11134667788888999999999999


Q ss_pred             CCCeEEEEECC
Q 021399          166 EDAIVRIWDTE  176 (313)
Q Consensus       166 ~d~~i~lwd~~  176 (313)
                      .=|.+.+|...
T Consensus       121 ~~g~v~lwr~d  131 (1416)
T KOG3617|consen  121 NPGSVHLWRYD  131 (1416)
T ss_pred             CCceeEEEEee
Confidence            99999999754

>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=96.97  E-value=0.00075  Score=60.38  Aligned_cols=208  Identities=15%  Similarity=0.145  Sum_probs=116.0

Q ss_pred             CCceEEEEECCCCC--eEEEeeCCCcEEEEECCCCe---EEEEecCCCCeeEEEeecCCeEEEEECCCceeccccceeee
Q 021399           52 NGAVWCCDVSRDSM--TLITGSADQTAKLWNVETGA---QLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKR  126 (313)
Q Consensus        52 ~~~V~~~~~~~~~~--~l~s~s~D~~v~vWd~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  126 (313)
                      ...+.|+++..+.+  .++.|..+|.|-+-..+...   -..+..+..+..+++|.+.+.-.++..-...........|+
T Consensus        56 tqy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwd  135 (783)
T KOG1008|consen   56 TQYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWD  135 (783)
T ss_pred             CCCceeehhhcCCchhhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCcccee
Confidence            34577787765543  67778889999887765322   11222234455566666543222221111111222233343


Q ss_pred             eeeCCCCCCCceEEEecCCCCceEEEEEccCCCEEEEeeCCCeEEEEECCCCceeeecccccCceeceEEEEECC-CCCE
Q 021399          127 IARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAA-DGSH  205 (313)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~t~~~d~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~-~~~~  205 (313)
                      +...-..+.......- +.....++++|-.+.+.+++|.....++++|++.... +...   -....+..+..+| .+++
T Consensus       136 i~s~ltvPke~~~fs~-~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~-~~~s---vnTk~vqG~tVdp~~~nY  210 (783)
T KOG1008|consen  136 INSLLTVPKESPLFSS-STLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLD-SVSS---VNTKYVQGITVDPFSPNY  210 (783)
T ss_pred             cccccCCCcccccccc-ccccCccccccccCcchhhcccccchhhhhhhhhhhh-hhhh---hhhhhcccceecCCCCCc
Confidence            3321111111111111 1223345788887778888888888999999874321 1111   1234566677777 6777


Q ss_pred             EEEeeCCCcEEEEE-CCC-CcEEEEEecC-----CceeEEEeccCCCEEEEcccccCceeEeeccCC
Q 021399          206 FLTGSLDKSAKLWD-ART-LELIKTYVTE-----RPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRA  265 (313)
Q Consensus       206 l~s~s~dg~i~iwd-~~~-~~~~~~~~~~-----~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~  265 (313)
                      +++.+ ||.|-+|| .+. ..++..+.+.     ..+..++|.|....+++...-+...++.+|.+.
T Consensus       211 ~cs~~-dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~~  276 (783)
T KOG1008|consen  211 FCSNS-DGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDICV  276 (783)
T ss_pred             eeccc-cCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEecccc
Confidence            76666 99999999 332 2334443322     248899999998777777666777777777543

>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=96.94  E-value=0.23  Score=43.17  Aligned_cols=261  Identities=15%  Similarity=0.124  Sum_probs=119.7

Q ss_pred             ccceeEEEEccCCCEEEEeeCCCCeEEEeCCCCcEEE-EecCCCC-----------------ceEEEEECCCCCeEEEee
Q 021399           10 ERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLG-TYRGHNG-----------------AVWCCDVSRDSMTLITGS   71 (313)
Q Consensus        10 ~~~v~~~~fs~~g~~l~s~s~d~~i~iw~~~~~~~~~-~~~~H~~-----------------~V~~~~~~~~~~~l~s~s   71 (313)
                      ...+....|||+|+.++-.. ++.|.+++..++.... +..| ..                 .-.++.||||++.|+...
T Consensus        42 ~~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~~~~~lT~dg-~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~  119 (353)
T PF00930_consen   42 PPKLQDAKWSPDGKYIAFVR-DNNLYLRDLATGQETQLTTDG-EPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLR  119 (353)
T ss_dssp             ETTBSEEEE-SSSTEEEEEE-TTEEEEESSTTSEEEESES---TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEE
T ss_pred             ccccccceeecCCCeeEEEe-cCceEEEECCCCCeEEecccc-ceeEEcCccceeccccccccccceEECCCCCEEEEEE
Confidence            45678899999999999876 5789999887774332 2222 11                 114577999999887765


Q ss_pred             C-CCcEEEEECC---CC-e---EEEEecCCCCeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEe-
Q 021399           72 A-DQTAKLWNVE---TG-A---QLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLIL-  142 (313)
Q Consensus        72 ~-D~~v~vWd~~---~~-~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  142 (313)
                      . +..|+.+.+.   .. .   ....+...        .+|+....+          .+.+.++...    ....+... 
T Consensus       120 ~d~~~v~~~~~~~~~~~~~~yp~~~~~~YP--------k~G~~np~v----------~l~v~~~~~~----~~~~~~~~~  177 (353)
T PF00930_consen  120 FDEREVPEYPLPDYSPPDSQYPEVESIRYP--------KAGDPNPRV----------SLFVVDLASG----KTTELDPPN  177 (353)
T ss_dssp             EE-TTS-EEEEEEESSSTESS-EEEEEE----------BTTS---EE----------EEEEEESSST----CCCEE---H
T ss_pred             ECCcCCceEEeeccCCccccCCcccccccC--------CCCCcCCce----------EEEEEECCCC----cEEEeeecc
Confidence            3 3444444321   11 0   11111110        012211000          0000111000    00011111 


Q ss_pred             --cCCCCceEEEEEccCCCEEEEe--eC---CCeEEEEECCCCceeeecc-cccCceeceEEEEEC-CCCCE-EEEeeCC
Q 021399          143 --KGPQGRINRAVWGPLNRTIISA--GE---DAIVRIWDTETGKLLKESD-KETGHKKTITSLAKA-ADGSH-FLTGSLD  212 (313)
Q Consensus       143 --~~~~~~i~~~~~~~~~~~i~t~--~~---d~~i~lwd~~~~~~~~~~~-~~~~h~~~v~~~~~s-~~~~~-l~s~s~d  212 (313)
                        ......+..+.|.+++..++..  ..   ...+.++|..++..-.... ...+.-..-....+. +++.. +.....|
T Consensus       178 ~~~~~~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~~~~~~~~~~~~~~~l~~s~~~  257 (353)
T PF00930_consen  178 SLNPQDYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLEETSDGWVDVYDPPHFLGPDGNEFLWISERD  257 (353)
T ss_dssp             HHHTSSEEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEEEESSSSSSSSSEEEE-TTTSSEEEEEEETT
T ss_pred             ccCCCccCcccceecCCCcEEEEEEcccCCCEEEEEEEECCCCceeEEEEecCCcceeeecccccccCCCCEEEEEEEcC
Confidence              1123356788899988844443  22   2346778887654321111 111111111233343 55554 4444567


Q ss_pred             CcE--EEEECCCCcEEEEEe-cCCce-eEEEeccCCCEEEEcccccC---ceeEeeccCCCceeeeeeehhhhhhhcccc
Q 021399          213 KSA--KLWDARTLELIKTYV-TERPV-NAVTMSPLLDHVVLGGGQDA---SAVTTTDHRAGKFEAKFFDKILQEEIGGVK  285 (313)
Q Consensus       213 g~i--~iwd~~~~~~~~~~~-~~~~~-~~~~~~p~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  285 (313)
                      |.-  .+.+...+.. +.+. ..-.+ ..+.+++.++.++..+..+.   ..++..+..            .+..+..+.
T Consensus       258 G~~hly~~~~~~~~~-~~lT~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~------------~~~~~~~LT  324 (353)
T PF00930_consen  258 GYRHLYLYDLDGGKP-RQLTSGDWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLD------------SGGEPKCLT  324 (353)
T ss_dssp             SSEEEEEEETTSSEE-EESS-SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETT------------ETTEEEESS
T ss_pred             CCcEEEEEcccccce-eccccCceeecccceEcCCCCEEEEEecCCCCCceEEEEEEeC------------CCCCeEecc
Confidence            754  4456665554 3433 33345 34778888887766544321   223222222            011112222


Q ss_pred             ccccceeEEEECCCCCeeEEEE
Q 021399          286 GHFGPINALAFNPDGKRYGFLL  307 (313)
Q Consensus       286 ~h~~~V~~~~fspdgk~~~~~~  307 (313)
                      ...+.-..++|||||+++..-.
T Consensus       325 ~~~~~~~~~~~Spdg~y~v~~~  346 (353)
T PF00930_consen  325 CEDGDHYSASFSPDGKYYVDTY  346 (353)
T ss_dssp             TTSSTTEEEEE-TTSSEEEEEE
T ss_pred             CCCCCceEEEECCCCCEEEEEE
Confidence            2222227999999999987543

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....

>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals

Probab=96.93  E-value=0.25  Score=43.51  Aligned_cols=242  Identities=11%  Similarity=0.078  Sum_probs=120.2

Q ss_pred             ceeEEEEccCCCEEEEeeCCCCeEEEeCCCCcEE-------------------------------------------EEe
Q 021399           12 PLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERL-------------------------------------------GTY   48 (313)
Q Consensus        12 ~v~~~~fs~~g~~l~s~s~d~~i~iw~~~~~~~~-------------------------------------------~~~   48 (313)
                      .|..+.|+++..-|+.|-..|.|-||.....+..                                           .-+
T Consensus         3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l~   82 (395)
T PF08596_consen    3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTLL   82 (395)
T ss_dssp             -EEEEEEETTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEEE
T ss_pred             eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhhe
Confidence            5788999999888888999999999854322110                                           012


Q ss_pred             cCCCCceEEEEECCCCCeEEEeeCCCcEEEEECCCCeEEEEecCCC---------CeeEEEeec-----CC---eEEEEE
Q 021399           49 RGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFNFDS---------PARSVDFAV-----GD---KLAVIT  111 (313)
Q Consensus        49 ~~H~~~V~~~~~~~~~~~l~s~s~D~~v~vWd~~~~~~~~~~~~~~---------~~~~~~~~~-----~~---~~~~~~  111 (313)
                      ....++|++++.|.-| +++.|..+|.+.|-|++....++......         .+..+.|..     +.   ..+++.
T Consensus        83 ~~~~g~vtal~~S~iG-Fvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~vG  161 (395)
T PF08596_consen   83 DAKQGPVTALKNSDIG-FVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLLVG  161 (395)
T ss_dssp             ---S-SEEEEEE-BTS-EEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEEEE
T ss_pred             eccCCcEeEEecCCCc-EEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEEEEE
Confidence            3446789999998555 78888999999999999888887643222         344555542     11   122222


Q ss_pred             CCCceeccccceeeeeeeCC-CCCCCceEEEecCCCCceEEEE-EccC---------------------CCEEEEeeCCC
Q 021399          112 TDPFMELNSAIHVKRIARDP-ADQGGESVLILKGPQGRINRAV-WGPL---------------------NRTIISAGEDA  168 (313)
Q Consensus       112 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~i~~~~-~~~~---------------------~~~i~t~~~d~  168 (313)
                      ++.     +......+.... .............+.+++..+. ++.+                     ..+++.++ +.
T Consensus       162 Tn~-----G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvS-e~  235 (395)
T PF08596_consen  162 TNS-----GNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVS-ES  235 (395)
T ss_dssp             ETT-----SEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE--SS
T ss_pred             eCC-----CCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEc-cc
Confidence            221     001111111000 0000000111112223332222 1111                     01344444 67


Q ss_pred             eEEEEECCCCceeeecccccCceeceEEEEE-----CCCCCEEEEeeCCCcEEEEECCCCcEEEEEecCC-----ceeEE
Q 021399          169 IVRIWDTETGKLLKESDKETGHKKTITSLAK-----AADGSHFLTGSLDKSAKLWDARTLELIKTYVTER-----PVNAV  238 (313)
Q Consensus       169 ~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~-----s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~-----~~~~~  238 (313)
                      .+|++...+.+...+...   .......+.+     ...+..|++-..+|.|+++.+-..+.+.......     .....
T Consensus       236 ~irv~~~~~~k~~~K~~~---~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lkei~~~~l~~~~d~~~~~~s  312 (395)
T PF08596_consen  236 DIRVFKPPKSKGAHKSFD---DPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKEIKSVSLPPPLDSRRLSSS  312 (395)
T ss_dssp             EEEEE-TT---EEEEE-S---S-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--EEEEEE-SS---HHHHTT-
T ss_pred             ceEEEeCCCCcccceeec---cccccceEEEEeecccCCceEEEEEECCCcEEEEECCCchHhhcccCCCcccccccccc
Confidence            799999877665443321   1112222233     2356678888999999999999988887775432     24567


Q ss_pred             EeccCCCEEEEcccccCceeEeecc
Q 021399          239 TMSPLLDHVVLGGGQDASAVTTTDH  263 (313)
Q Consensus       239 ~~~p~~~~~~~~~~~~~~~~~~~~~  263 (313)
                      ++.++|+.++..+..+...+.++..
T Consensus       313 sis~~Gdi~~~~gpsE~~l~sv~~~  337 (395)
T PF08596_consen  313 SISRNGDIFYWTGPSEIQLFSVWGE  337 (395)
T ss_dssp             EE-TTS-EEEE-SSSEEEEEEEES-
T ss_pred             EECCCCCEEEEeCcccEEEEEEEcc
Confidence            7789999877776555544544443

The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.

>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins

Probab=96.89  E-value=0.055  Score=51.30  Aligned_cols=137  Identities=15%  Similarity=0.140  Sum_probs=82.2

Q ss_pred             CCCCeEEEeCCCCcEEEEecCCCCc-eEEEEECCC-------CCeEEEeeCCCcEEEEECCCCeEEEEecCCCCeeEEEe
Q 021399           30 KDHTPTVWFADNGERLGTYRGHNGA-VWCCDVSRD-------SMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDF  101 (313)
Q Consensus        30 ~d~~i~iw~~~~~~~~~~~~~H~~~-V~~~~~~~~-------~~~l~s~s~D~~v~vWd~~~~~~~~~~~~~~~~~~~~~  101 (313)
                      ....++-.|++.|+.+...+.|... |..+  .|+       ++..+.|-.+..+..||++-........ .    ...+
T Consensus       502 ~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~--~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~-~----~k~Y  574 (794)
T PF08553_consen  502 NPNKLYKMDLERGKVVEEWKVHDDIPVVDI--APDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDS-Q----SKQY  574 (794)
T ss_pred             CCCceEEEecCCCcEEEEeecCCCcceeEe--cccccccccCCCceEEEECCCceEEeccCCCCCceeec-c----cccc
Confidence            3466777788899988888887654 5443  332       2334556777788888876421000000 0    0000


Q ss_pred             ecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEccCCCEEEEeeCCCeEEEEECCCCcee
Q 021399          102 AVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLL  181 (313)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~t~~~d~~i~lwd~~~~~~~  181 (313)
                                                                .......+++-..+ .+||+|+.+|.|||||.. ++..
T Consensus       575 ------------------------------------------~~~~~Fs~~aTt~~-G~iavgs~~G~IRLyd~~-g~~A  610 (794)
T PF08553_consen  575 ------------------------------------------SSKNNFSCFATTED-GYIAVGSNKGDIRLYDRL-GKRA  610 (794)
T ss_pred             ------------------------------------------ccCCCceEEEecCC-ceEEEEeCCCcEEeeccc-chhh
Confidence                                                      00112223333333 469999999999999943 3322


Q ss_pred             eecccccCceeceEEEEECCCCCEEEEeeCCCcEEEEEC
Q 021399          182 KESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDA  220 (313)
Q Consensus       182 ~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~dg~i~iwd~  220 (313)
                      ++  ...+-..+|..+..+.||++|++.+. ..+.+++.
T Consensus       611 KT--~lp~lG~pI~~iDvt~DGkwilaTc~-tyLlLi~t  646 (794)
T PF08553_consen  611 KT--ALPGLGDPIIGIDVTADGKWILATCK-TYLLLIDT  646 (794)
T ss_pred             hh--cCCCCCCCeeEEEecCCCcEEEEeec-ceEEEEEE
Confidence            22  22356789999999999999887764 45667764

Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].

>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=96.84  E-value=0.32  Score=43.32  Aligned_cols=229  Identities=11%  Similarity=0.021  Sum_probs=103.1

Q ss_pred             eeEEEEccCCCEEEEe-eCCCC----eEEEeCCCCcEEE-EecCCCCceEEEEECCCCCeEEEeeCCC-----------c
Q 021399           13 LTYLKYNKDGDLLFSC-AKDHT----PTVWFADNGERLG-TYRGHNGAVWCCDVSRDSMTLITGSADQ-----------T   75 (313)
Q Consensus        13 v~~~~fs~~g~~l~s~-s~d~~----i~iw~~~~~~~~~-~~~~H~~~V~~~~~~~~~~~l~s~s~D~-----------~   75 (313)
                      +...++||||++++-+ +.+|.    +++.|+++++.+. .+..-.  -..+.|.++++.|+-...|.           .
T Consensus       126 ~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~~~--~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~  203 (414)
T PF02897_consen  126 LGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIENPK--FSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQ  203 (414)
T ss_dssp             EEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEEEE--SEEEEECTTSSEEEEEECSTTTSS-CCGCCEE
T ss_pred             eeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCcccccc--cceEEEeCCCCEEEEEEeCcccccccCCCCcE
Confidence            3467899999988854 44444    9999999997654 223211  12389999988665444332           3


Q ss_pred             EEEEECCCCeE--EEEecCC--CC-eeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceE
Q 021399           76 AKLWNVETGAQ--LFTFNFD--SP-ARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRIN  150 (313)
Q Consensus        76 v~vWd~~~~~~--~~~~~~~--~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  150 (313)
                      |+.|.+.+...  ...+.-.  .- ...+..+.+++.+++....... .....+.+..... ............-.+...
T Consensus       204 v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~-~s~v~~~d~~~~~-~~~~~~~~l~~~~~~~~~  281 (414)
T PF02897_consen  204 VYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTS-ESEVYLLDLDDGG-SPDAKPKLLSPREDGVEY  281 (414)
T ss_dssp             EEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSS-EEEEEEEECCCTT-TSS-SEEEEEESSSS-EE
T ss_pred             EEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEcccc-CCeEEEEeccccC-CCcCCcEEEeCCCCceEE
Confidence            78888876532  2333321  22 3355566666655543221110 0111111111100 011122222222222222


Q ss_pred             EEEEccCCCEEEEee---CCCeEEEEECCCCce--eeecccccCcee--ceEEEEECCCCCEEEE-eeCCC--cEEEEEC
Q 021399          151 RAVWGPLNRTIISAG---EDAIVRIWDTETGKL--LKESDKETGHKK--TITSLAKAADGSHFLT-GSLDK--SAKLWDA  220 (313)
Q Consensus       151 ~~~~~~~~~~i~t~~---~d~~i~lwd~~~~~~--~~~~~~~~~h~~--~v~~~~~s~~~~~l~s-~s~dg--~i~iwd~  220 (313)
                      .+... .+.+++...   ..+.|...++.+...  .....  ..+..  .+..+..  .+++|+. ...++  .|+++|+
T Consensus       282 ~v~~~-~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l--~~~~~~~~l~~~~~--~~~~Lvl~~~~~~~~~l~v~~~  356 (414)
T PF02897_consen  282 YVDHH-GDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVL--IPEDEDVSLEDVSL--FKDYLVLSYRENGSSRLRVYDL  356 (414)
T ss_dssp             EEEEE-TTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEE--E--SSSEEEEEEEE--ETTEEEEEEEETTEEEEEEEET
T ss_pred             EEEcc-CCEEEEeeCCCCCCcEEEEecccccccccceeEE--cCCCCceeEEEEEE--ECCEEEEEEEECCccEEEEEEC
Confidence            23222 333333332   235666667665542  11111  12333  3444443  3444444 44444  4788999


Q ss_pred             CCCcEEEEEecC--CceeEEEeccCCCEEEEc
Q 021399          221 RTLELIKTYVTE--RPVNAVTMSPLLDHVVLG  250 (313)
Q Consensus       221 ~~~~~~~~~~~~--~~~~~~~~~p~~~~~~~~  250 (313)
                      ..+.....+...  ..+..+...+..+.+.+.
T Consensus       357 ~~~~~~~~~~~p~~g~v~~~~~~~~~~~~~~~  388 (414)
T PF02897_consen  357 DDGKESREIPLPEAGSVSGVSGDFDSDELRFS  388 (414)
T ss_dssp             T-TEEEEEEESSSSSEEEEEES-TT-SEEEEE
T ss_pred             CCCcEEeeecCCcceEEeccCCCCCCCEEEEE
Confidence            834444444332  223444445555555544

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=96.83  E-value=0.07  Score=47.61  Aligned_cols=133  Identities=16%  Similarity=0.145  Sum_probs=69.7

Q ss_pred             CCCeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEccCCCEEEEeeCCCeEEE
Q 021399           93 DSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRI  172 (313)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~t~~~d~~i~l  172 (313)
                      ...+..+.++|.+.++++..+....+.......+..                 .+.....+|.+ .+.+|+-.....|.+
T Consensus        32 ~~~p~~ls~npngr~v~V~g~geY~iyt~~~~r~k~-----------------~G~g~~~vw~~-~n~yAv~~~~~~I~I   93 (443)
T PF04053_consen   32 EIYPQSLSHNPNGRFVLVCGDGEYEIYTALAWRNKA-----------------FGSGLSFVWSS-RNRYAVLESSSTIKI   93 (443)
T ss_dssp             SS--SEEEE-TTSSEEEEEETTEEEEEETTTTEEEE-----------------EEE-SEEEE-T-SSEEEEE-TTS-EEE
T ss_pred             CcCCeeEEECCCCCEEEEEcCCEEEEEEccCCcccc-----------------cCceeEEEEec-CccEEEEECCCeEEE
Confidence            344667788887777776555444332211111110                 13345678888 455788887889999


Q ss_pred             EECCCCceeeecccccCceeceEEEEECCCCCEEEEeeCCCcEEEEECCCCcEEEEEecCCceeEEEeccCCCEEEEccc
Q 021399          173 WDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTERPVNAVTMSPLLDHVVLGGG  252 (313)
Q Consensus       173 wd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~  252 (313)
                      +.-.+....+.+..    ...+..+..   |..|...+. +.|.+||..+++.++.+... ++..+.|+++++.+++.+.
T Consensus        94 ~kn~~~~~~k~i~~----~~~~~~If~---G~LL~~~~~-~~i~~yDw~~~~~i~~i~v~-~vk~V~Ws~~g~~val~t~  164 (443)
T PF04053_consen   94 YKNFKNEVVKSIKL----PFSVEKIFG---GNLLGVKSS-DFICFYDWETGKLIRRIDVS-AVKYVIWSDDGELVALVTK  164 (443)
T ss_dssp             EETTEE-TT---------SS-EEEEE----SSSEEEEET-TEEEEE-TTT--EEEEESS--E-EEEEE-TTSSEEEEE-S
T ss_pred             EEcCccccceEEcC----CcccceEEc---CcEEEEECC-CCEEEEEhhHcceeeEEecC-CCcEEEEECCCCEEEEEeC
Confidence            74222221112211    112344432   776666654 48999999999999998654 3899999999999888753

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>PRK13616 lipoprotein LpqB; Provisional

Probab=96.59  E-value=0.36  Score=44.93  Aligned_cols=189  Identities=11%  Similarity=0.132  Sum_probs=93.7

Q ss_pred             cceeEEEEccCCCEEEEee------CCCCeEEEeCCCCcEEEE-ecCCCCceEEEEECCCCCeEEEeeCC-CcEEEE---
Q 021399           11 RPLTYLKYNKDGDLLFSCA------KDHTPTVWFADNGERLGT-YRGHNGAVWCCDVSRDSMTLITGSAD-QTAKLW---   79 (313)
Q Consensus        11 ~~v~~~~fs~~g~~l~s~s------~d~~i~iw~~~~~~~~~~-~~~H~~~V~~~~~~~~~~~l~s~s~D-~~v~vW---   79 (313)
                      ..+...++||||+.++...      .|..-.||-...+..... ..+.  ....-.|+|+|+.+++.+.. ..+++.   
T Consensus       350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg~~~~lt~g~--~~t~PsWspDG~~lw~v~dg~~~~~v~~~~  427 (591)
T PRK13616        350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGGVAVQVLEGH--SLTRPSWSLDADAVWVVVDGNTVVRVIRDP  427 (591)
T ss_pred             cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCCCcceeeecCC--CCCCceECCCCCceEEEecCcceEEEeccC
Confidence            3567889999999888766      355556664432222222 2332  37788999998877666432 222222   


Q ss_pred             --------ECCCCeEEEEecCCCCeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCC-C-CceEEEecCCCCce
Q 021399           80 --------NVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQ-G-GESVLILKGPQGRI  149 (313)
Q Consensus        80 --------d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~i  149 (313)
                              +++.++...  .....+..+.|+++++.++.....      .+.+-.+.+..... . ........+-...+
T Consensus       428 ~~gql~~~~vd~ge~~~--~~~g~Issl~wSpDG~RiA~i~~g------~v~Va~Vvr~~~G~~~l~~~~~l~~~l~~~~  499 (591)
T PRK13616        428 ATGQLARTPVDASAVAS--RVPGPISELQLSRDGVRAAMIIGG------KVYLAVVEQTEDGQYALTNPREVGPGLGDTA  499 (591)
T ss_pred             CCceEEEEeccCchhhh--ccCCCcCeEEECCCCCEEEEEECC------EEEEEEEEeCCCCceeecccEEeecccCCcc
Confidence                    333332222  334568888999877655543321      22222222211110 0 00111112222335


Q ss_pred             EEEEEccCCCEEEEeeCCCeEEEEECCC-CceeeecccccCceeceEEEEECCCCCEEEEeeCCC
Q 021399          150 NRAVWGPLNRTIISAGEDAIVRIWDTET-GKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDK  213 (313)
Q Consensus       150 ~~~~~~~~~~~i~t~~~d~~i~lwd~~~-~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~dg  213 (313)
                      .++.|..++.. +++..++.-.+|.+.- +... ...........+.+++-+++  .++....++
T Consensus       500 ~~l~W~~~~~L-~V~~~~~~~~v~~v~vDG~~~-~~~~~~n~~~~v~~vaa~~~--~iyv~~~~g  560 (591)
T PRK13616        500 VSLDWRTGDSL-VVGRSDPEHPVWYVNLDGSNS-DALPSRNLSAPVVAVAASPS--TVYVTDARA  560 (591)
T ss_pred             ccceEecCCEE-EEEecCCCCceEEEecCCccc-cccCCCCccCceEEEecCCc--eEEEEcCCc
Confidence            67889988874 4555555445555422 2211 11011112445666666542  344444454

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=96.45  E-value=0.57  Score=41.23  Aligned_cols=219  Identities=17%  Similarity=0.139  Sum_probs=129.3

Q ss_pred             eEEEEccCCC-EEEEeeCCCCeEEEeCCCCcEEEEecCCCCceEEEEECCCCCeEEEeeC---CCcEEEEECCCCeEEEE
Q 021399           14 TYLKYNKDGD-LLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSA---DQTAKLWNVETGAQLFT   89 (313)
Q Consensus        14 ~~~~fs~~g~-~l~s~s~d~~i~iw~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~---D~~v~vWd~~~~~~~~~   89 (313)
                      ..+.+++.++ ..+....+..|.+.|.++.+..+...--. .-..++++++++.+..+..   ++++-+-|..+.+.+..
T Consensus        77 ~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~vG~-~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~  155 (381)
T COG3391          77 AGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIPVGL-GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTAT  155 (381)
T ss_pred             cceeeCCCCCeEEEecCCCCeEEEEcCcccceeeEeeecc-CCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEE
Confidence            4677888887 44445556899999988777665543211 4456889999876655544   68888888888887776


Q ss_pred             ecCCCCeeEEEeecCCeEEEEEC--CCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEccCCCEEEEee-C
Q 021399           90 FNFDSPARSVDFAVGDKLAVITT--DPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAG-E  166 (313)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~t~~-~  166 (313)
                      .........+.+.+++..+....  +....... .....+.+ ..  ....+    .....-..+.+.|++.++.... .
T Consensus       156 ~~vG~~P~~~a~~p~g~~vyv~~~~~~~v~vi~-~~~~~v~~-~~--~~~~~----~~~~~P~~i~v~~~g~~~yV~~~~  227 (381)
T COG3391         156 IPVGNTPTGVAVDPDGNKVYVTNSDDNTVSVID-TSGNSVVR-GS--VGSLV----GVGTGPAGIAVDPDGNRVYVANDG  227 (381)
T ss_pred             EecCCCcceEEECCCCCeEEEEecCCCeEEEEe-CCCcceec-cc--ccccc----ccCCCCceEEECCCCCEEEEEecc
Confidence            54443336677777666444433  11111100 00000000 00  00000    0111224577888888554433 3


Q ss_pred             C--CeEEEEECCCCceeeecccccCceeceEEEEECCCCCEEEEeeC-CCcEEEEECCCCcEEEEEecCC----ceeEEE
Q 021399          167 D--AIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSL-DKSAKLWDARTLELIKTYVTER----PVNAVT  239 (313)
Q Consensus       167 d--~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~-dg~i~iwd~~~~~~~~~~~~~~----~~~~~~  239 (313)
                      +  +.+...|..++........ .+-. ....++..|+|+.+..... .+.+.+-|..+......+....    ....++
T Consensus       228 ~~~~~v~~id~~~~~v~~~~~~-~~~~-~~~~v~~~p~g~~~yv~~~~~~~V~vid~~~~~v~~~~~~~~~~~~~~~~~~  305 (381)
T COG3391         228 SGSNNVLKIDTATGNVTATDLP-VGSG-APRGVAVDPAGKAAYVANSQGGTVSVIDGATDRVVKTGPTGNEALGEPVSIA  305 (381)
T ss_pred             CCCceEEEEeCCCceEEEeccc-cccC-CCCceeECCCCCEEEEEecCCCeEEEEeCCCCceeeeecccccccccceecc
Confidence            2  5899999888776554221 1122 5667889999999888754 4889999999888776654322    244455


Q ss_pred             eccC
Q 021399          240 MSPL  243 (313)
Q Consensus       240 ~~p~  243 (313)
                      +.+.
T Consensus       306 ~~~~  309 (381)
T COG3391         306 ISPL  309 (381)
T ss_pred             ceee
Confidence            5443

>PRK13616 lipoprotein LpqB; Provisional

Probab=96.33  E-value=0.04  Score=51.08  Aligned_cols=109  Identities=17%  Similarity=0.126  Sum_probs=62.0

Q ss_pred             eceEEEEECCCCCEEEEee------CCCcEEEE--ECCCCcEEEEEecCCceeEEEeccCCCEEEEcccccCceeEeecc
Q 021399          192 KTITSLAKAADGSHFLTGS------LDKSAKLW--DARTLELIKTYVTERPVNAVTMSPLLDHVVLGGGQDASAVTTTDH  263 (313)
Q Consensus       192 ~~v~~~~~s~~~~~l~s~s------~dg~i~iw--d~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~  263 (313)
                      ..+.+.+.+|+|+.++..-      .|+.-.||  +.. +.. +.+........-.|+|+++.+.+....+. ...+.+.
T Consensus       350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~g-g~~-~~lt~g~~~t~PsWspDG~~lw~v~dg~~-~~~v~~~  426 (591)
T PRK13616        350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLG-GVA-VQVLEGHSLTRPSWSLDADAVWVVVDGNT-VVRVIRD  426 (591)
T ss_pred             cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCC-Ccc-eeeecCCCCCCceECCCCCceEEEecCcc-eEEEecc
Confidence            4678889999999887665      24443444  542 222 44433334677889999887766532111 1112211


Q ss_pred             CCCceeeeeeehhhhhhhccccccccceeEEEECCCCCeeEEEE
Q 021399          264 RAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKRYGFLL  307 (313)
Q Consensus       264 ~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~fspdgk~~~~~~  307 (313)
                       .+..++...+...+....   ...+.|.+++|||||+++||+.
T Consensus       427 -~~~gql~~~~vd~ge~~~---~~~g~Issl~wSpDG~RiA~i~  466 (591)
T PRK13616        427 -PATGQLARTPVDASAVAS---RVPGPISELQLSRDGVRAAMII  466 (591)
T ss_pred             -CCCceEEEEeccCchhhh---ccCCCcCeEEECCCCCEEEEEE
Confidence             111222222332222211   2356799999999999999975

>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]

Probab=96.27  E-value=0.038  Score=50.41  Aligned_cols=120  Identities=16%  Similarity=0.151  Sum_probs=80.6

Q ss_pred             CCceEEEEECCCCCeEEEeeCCCcEEEEECCCCeEEEEecCCCCeeEEEeecCCeEEEEECCCceeccccceeeeeeeCC
Q 021399           52 NGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDP  131 (313)
Q Consensus        52 ~~~V~~~~~~~~~~~l~s~s~D~~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  131 (313)
                      ...|.--+++..+++++-|++-|.+.+++-..++... ...                                       
T Consensus        33 ~~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~-~~~---------------------------------------   72 (726)
T KOG3621|consen   33 PARVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRK-LKN---------------------------------------   72 (726)
T ss_pred             cceEEEEEeecCCceEEEecccceEEEEecCchhhhc-ccc---------------------------------------
Confidence            3344334455667899999999999999865543211 000                                       


Q ss_pred             CCCCCceEEEecCCCCceEEEEEccCCCEEEEeeCCCeEEEEECCCCceeee--c-ccccCceeceEEEEECCCCCEEEE
Q 021399          132 ADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKE--S-DKETGHKKTITSLAKAADGSHFLT  208 (313)
Q Consensus       132 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~t~~~d~~i~lwd~~~~~~~~~--~-~~~~~h~~~v~~~~~s~~~~~l~s  208 (313)
                                 .+..+.+.....++.+.++|.|+..|.|.++-++...+-..  + .....|...|++++|++|+..+.+
T Consensus        73 -----------~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~~~~~~t~~d~~~~~rVTal~Ws~~~~k~ys  141 (726)
T KOG3621|consen   73 -----------EGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPRDLDYVTPCDKSHKCRVTALEWSKNGMKLYS  141 (726)
T ss_pred             -----------cCccceEEEEEecchhHhhhhhcCCceEEeehhhccCCCcceeeccccccCCceEEEEEecccccEEee
Confidence                       00122334455677778888899999998887665322110  1 111237889999999999999999


Q ss_pred             eeCCCcEEEEECCC
Q 021399          209 GSLDKSAKLWDART  222 (313)
Q Consensus       209 ~s~dg~i~iwd~~~  222 (313)
                      |..-|+|..-.+.+
T Consensus       142 GD~~Gkv~~~~L~s  155 (726)
T KOG3621|consen  142 GDSQGKVVLTELDS  155 (726)
T ss_pred             cCCCceEEEEEech
Confidence            99999998877665

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=96.23  E-value=0.0053  Score=57.02  Aligned_cols=70  Identities=19%  Similarity=0.163  Sum_probs=63.2

Q ss_pred             eeEEEEccCCCEEEEeeCCCCeEEEeCCCCcEEEEecCCCCceEEEEECCCCCeEEEeeCCCcEEEEECC
Q 021399           13 LTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVE   82 (313)
Q Consensus        13 v~~~~fs~~g~~l~s~s~d~~i~iw~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~v~vWd~~   82 (313)
                      +.++||+|..-.|++|=.-|.+.+|...+.+.-.....|..+|..+.||++|..++|+..-|.+.+|...
T Consensus        62 atSLCWHpe~~vLa~gwe~g~~~v~~~~~~e~htv~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d  131 (1416)
T KOG3617|consen   62 ATSLCWHPEEFVLAQGWEMGVSDVQKTNTTETHTVVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYD  131 (1416)
T ss_pred             hhhhccChHHHHHhhccccceeEEEecCCceeeeeccCCCCCceeEEecCCCCeEEEcCCCceeEEEEee
Confidence            4569999999999999999999999988877766677899999999999999999999999999999875

>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation

Probab=96.19  E-value=0.085  Score=43.51  Aligned_cols=105  Identities=24%  Similarity=0.234  Sum_probs=57.1

Q ss_pred             ceEEEEECCCCCEEEEee-CCCcEEEEECCCCcEEEEEecCCceeEEEeccCCCEEEEcccccCceeEeeccCCCceeee
Q 021399          193 TITSLAKAADGSHFLTGS-LDKSAKLWDARTLELIKTYVTERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAK  271 (313)
Q Consensus       193 ~v~~~~~s~~~~~l~s~s-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  271 (313)
                      .+.+.+.+++++.++... .++.-.+|-.+.+...........+..-+|.+++....+..+.. ......+...+.....
T Consensus        25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~~~~~~~g~~l~~PS~d~~g~~W~v~~~~~-~~~~~~~~~~g~~~~~  103 (253)
T PF10647_consen   25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGPVRPVLTGGSLTRPSWDPDGWVWTVDDGSG-GVRVVRDSASGTGEPV  103 (253)
T ss_pred             cccceEECCCCCeEEEEEEcCCCCEEEEEcCCCcceeeccCCccccccccCCCCEEEEEcCCC-ceEEEEecCCCcceeE
Confidence            688899999999887766 22333444434444333333334566778888854433333222 2221111111111111


Q ss_pred             eeehhhhhhhccccccccceeEEEECCCCCeeEEEE
Q 021399          272 FFDKILQEEIGGVKGHFGPINALAFNPDGKRYGFLL  307 (313)
Q Consensus       272 ~~~~~~~~~~~~~~~h~~~V~~~~fspdgk~~~~~~  307 (313)
                      ..+.         ..-.+.|.++++||||+++|++.
T Consensus       104 ~v~~---------~~~~~~I~~l~vSpDG~RvA~v~  130 (253)
T PF10647_consen  104 EVDW---------PGLRGRITALRVSPDGTRVAVVV  130 (253)
T ss_pred             Eecc---------cccCCceEEEEECCCCcEEEEEE
Confidence            1111         11112899999999999999987

It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.

>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region

Probab=96.17  E-value=0.26  Score=34.49  Aligned_cols=83  Identities=17%  Similarity=0.153  Sum_probs=54.0

Q ss_pred             eeEEEEc---cCC-CEEEEeeCCCCeEEEeCCCCcEEEEecCCCCceEEEEECCCCCeEEEeeCCCcEEEEECCCCeEEE
Q 021399           13 LTYLKYN---KDG-DLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLF   88 (313)
Q Consensus        13 v~~~~fs---~~g-~~l~s~s~d~~i~iw~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~v~vWd~~~~~~~~   88 (313)
                      |.++++.   .|| +-|+.||.|..||+|+-  .+.+.++..+ +.|.++.-... ..|+-+-.+|+|-+|+-  .+..+
T Consensus         2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~--~e~~~Ei~e~-~~v~~L~~~~~-~~F~Y~l~NGTVGvY~~--~~RlW   75 (111)
T PF14783_consen    2 VTALCLFDFDGDGENELLVGSDDFEIRVFKG--DEIVAEITET-DKVTSLCSLGG-GRFAYALANGTVGVYDR--SQRLW   75 (111)
T ss_pred             eeEEEEEecCCCCcceEEEecCCcEEEEEeC--CcEEEEEecc-cceEEEEEcCC-CEEEEEecCCEEEEEeC--cceee
Confidence            4555543   344 58888999999999963  4666677664 45666665544 56888899999998874  33444


Q ss_pred             EecCCCCeeEEEe
Q 021399           89 TFNFDSPARSVDF  101 (313)
Q Consensus        89 ~~~~~~~~~~~~~  101 (313)
                      .......+.++.+
T Consensus        76 RiKSK~~~~~~~~   88 (111)
T PF14783_consen   76 RIKSKNQVTSMAF   88 (111)
T ss_pred             eeccCCCeEEEEE
Confidence            4444333444443

>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain

Probab=96.17  E-value=0.02  Score=33.38  Aligned_cols=33  Identities=6%  Similarity=0.121  Sum_probs=29.0

Q ss_pred             eeceEEEEECCCCCEEEEeeCCCcEEEEECCCCc
Q 021399          191 KKTITSLAKAADGSHFLTGSLDKSAKLWDARTLE  224 (313)
Q Consensus       191 ~~~v~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~  224 (313)
                      ...|..++|+|..+.||.++.||.|.++.+ +++
T Consensus        11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~q   43 (47)
T PF12894_consen   11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQ   43 (47)
T ss_pred             CCcEEEEEECCCCCEEEEEECCCeEEEEEC-CCc
Confidence            356889999999999999999999999998 444

>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.16  E-value=0.02  Score=54.73  Aligned_cols=70  Identities=24%  Similarity=0.447  Sum_probs=56.1

Q ss_pred             ccceeEEEEccCCCEEEEeeCCCCeEEEeCCCCcEEEEecCCCCceEEE---EECCCCCeEEEeeCCCcEEEEEC
Q 021399           10 ERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCC---DVSRDSMTLITGSADQTAKLWNV   81 (313)
Q Consensus        10 ~~~v~~~~fs~~g~~l~s~s~d~~i~iw~~~~~~~~~~~~~H~~~V~~~---~~~~~~~~l~s~s~D~~v~vWd~   81 (313)
                      ..+|.+++|+.+|..++.|-.+|.|.+||...+..++.+..|..++.++   .+..++..++++..-|.  +|.+
T Consensus       130 ~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap~t~vi~v~~t~~nS~llt~D~~Gs--f~~l  202 (1206)
T KOG2079|consen  130 QGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEHGAPVTGVIFVGRTSQNSKLLTSDTGGS--FWKL  202 (1206)
T ss_pred             CCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeeecCCccceEEEEEEeCCCcEEEEccCCCc--eEEE
Confidence            3479999999999999999999999999999999988888776665443   33344557888887776  6765

>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit

Probab=96.14  E-value=0.74  Score=39.41  Aligned_cols=194  Identities=14%  Similarity=0.146  Sum_probs=99.9

Q ss_pred             CeEEEeCCCCcEEEEecCCC-CceEEEE---ECCC----CCeEEEeeC----------CCcEEEEECCCC-----eE--E
Q 021399           33 TPTVWFADNGERLGTYRGHN-GAVWCCD---VSRD----SMTLITGSA----------DQTAKLWNVETG-----AQ--L   87 (313)
Q Consensus        33 ~i~iw~~~~~~~~~~~~~H~-~~V~~~~---~~~~----~~~l~s~s~----------D~~v~vWd~~~~-----~~--~   87 (313)
                      .|++.|..+.+.+.++.-.. ..+.+++   +..+    .++++.|..          .|.+.++++.+.     +.  +
T Consensus         3 ~i~l~d~~~~~~~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~i   82 (321)
T PF03178_consen    3 SIRLVDPTTFEVLDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKLI   82 (321)
T ss_dssp             EEEEEETTTSSEEEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEEE
T ss_pred             EEEEEeCCCCeEEEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEEEE
Confidence            56778877777665554322 2334433   3322    346665542          288999999884     22  2


Q ss_pred             EEecCCCCeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEccCCCEEEEeeCC
Q 021399           88 FTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGED  167 (313)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~t~~~d  167 (313)
                      .......++.++... ++.++++....       +.++++....   .-........+ ..+.++.  ..+++|+.|..-
T Consensus        83 ~~~~~~g~V~ai~~~-~~~lv~~~g~~-------l~v~~l~~~~---~l~~~~~~~~~-~~i~sl~--~~~~~I~vgD~~  148 (321)
T PF03178_consen   83 HSTEVKGPVTAICSF-NGRLVVAVGNK-------LYVYDLDNSK---TLLKKAFYDSP-FYITSLS--VFKNYILVGDAM  148 (321)
T ss_dssp             EEEEESS-EEEEEEE-TTEEEEEETTE-------EEEEEEETTS---SEEEEEEE-BS-SSEEEEE--EETTEEEEEESS
T ss_pred             EEEeecCcceEhhhh-CCEEEEeecCE-------EEEEEccCcc---cchhhheecce-EEEEEEe--ccccEEEEEEcc
Confidence            233456677766554 44455544332       2223322211   01111122211 2333333  335689999877


Q ss_pred             CeEEEE--ECCCCceeeecccccCceeceEEEEECCCCCEEEEeeCCCcEEEEECCC-----------CcEEEEEecCCc
Q 021399          168 AIVRIW--DTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDART-----------LELIKTYVTERP  234 (313)
Q Consensus       168 ~~i~lw--d~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~dg~i~iwd~~~-----------~~~~~~~~~~~~  234 (313)
                      ..+.++  +....+ +..+.. ......++++.+-++++.++.+..+|.+.++....           ...+..+.....
T Consensus       149 ~sv~~~~~~~~~~~-l~~va~-d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~~~~~~~~~~~~~L~~~~~f~lg~~  226 (321)
T PF03178_consen  149 KSVSLLRYDEENNK-LILVAR-DYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYNPEIPNSRDGDPKLERISSFHLGDI  226 (321)
T ss_dssp             SSEEEEEEETTTE--EEEEEE-ESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-SS-SSTTTTTTBEEEEEEEE-SS-
T ss_pred             cCEEEEEEEccCCE-EEEEEe-cCCCccEEEEEEecCCcEEEEEcCCCeEEEEEECCCCcccccccccceeEEEEECCCc
Confidence            777766  543322 222222 12355688888876667999999999999987552           123444555666


Q ss_pred             eeEE---Eecc
Q 021399          235 VNAV---TMSP  242 (313)
Q Consensus       235 ~~~~---~~~p  242 (313)
                      ++++   ++.|
T Consensus       227 v~~~~~~~l~~  237 (321)
T PF03178_consen  227 VNSFRRGSLIP  237 (321)
T ss_dssp             EEEEEE--SS-
T ss_pred             cceEEEEEeee
Confidence            7776   5555

CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=95.99  E-value=1  Score=39.68  Aligned_cols=229  Identities=12%  Similarity=0.072  Sum_probs=128.2

Q ss_pred             eeEEEEccCCCEEEEeeCC-CCeEEEeCCCCcEEEEecCCCCceEEEEECCCCC-eEEEeeCCCcEEEEECCCCeEEEEe
Q 021399           13 LTYLKYNKDGDLLFSCAKD-HTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSM-TLITGSADQTAKLWNVETGAQLFTF   90 (313)
Q Consensus        13 v~~~~fs~~g~~l~s~s~d-~~i~iw~~~~~~~~~~~~~H~~~V~~~~~~~~~~-~l~s~s~D~~v~vWd~~~~~~~~~~   90 (313)
                      ...+.+.+++..+.....- ..+..-+............-...-..+++++.++ .+++...++.|.+-|..+.......
T Consensus        33 ~~~v~~~~~g~~~~v~~~~~~~~~~~~~~~n~~~~~~~~g~~~p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~  112 (381)
T COG3391          33 PGGVAVNPDGTQVYVANSGSNDVSVIDATSNTVTQSLSVGGVYPAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSI  112 (381)
T ss_pred             CceeEEcCccCEEEEEeecCceeeecccccceeeeeccCCCccccceeeCCCCCeEEEecCCCCeEEEEcCcccceeeEe
Confidence            3456777888544444322 2344444331111111111001223567888776 5566666799999998777776666


Q ss_pred             cCCCCeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEccCCCEEEEe-eCCCe
Q 021399           91 NFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISA-GEDAI  169 (313)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~t~-~~d~~  169 (313)
                      ........+.+.++.+.+.+.....  .+....  .+.    ...............+ ..+++.|+++.+..+ ..++.
T Consensus       113 ~vG~~P~~~~~~~~~~~vYV~n~~~--~~~~vs--vid----~~t~~~~~~~~vG~~P-~~~a~~p~g~~vyv~~~~~~~  183 (381)
T COG3391         113 PVGLGPVGLAVDPDGKYVYVANAGN--GNNTVS--VID----AATNKVTATIPVGNTP-TGVAVDPDGNKVYVTNSDDNT  183 (381)
T ss_pred             eeccCCceEEECCCCCEEEEEeccc--CCceEE--EEe----CCCCeEEEEEecCCCc-ceEEECCCCCeEEEEecCCCe
Confidence            6555666777777665554433211  000000  000    0111122222111123 678899999866555 47899


Q ss_pred             EEEEECCCCceee-ecccccCceeceEEEEECCCCCEEEEeeCC---CcEEEEECCCCcEEEEE-ecCC-ceeEEEeccC
Q 021399          170 VRIWDTETGKLLK-ESDKETGHKKTITSLAKAADGSHFLTGSLD---KSAKLWDARTLELIKTY-VTER-PVNAVTMSPL  243 (313)
Q Consensus       170 i~lwd~~~~~~~~-~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d---g~i~iwd~~~~~~~~~~-~~~~-~~~~~~~~p~  243 (313)
                      |.+.|.......+ .......-......++++++|+++......   +.+...|.+++...... .... ....+..+|.
T Consensus       184 v~vi~~~~~~v~~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~v~~~p~  263 (381)
T COG3391         184 VSVIDTSGNSVVRGSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNVTATDLPVGSGAPRGVAVDPA  263 (381)
T ss_pred             EEEEeCCCcceeccccccccccCCCCceEEECCCCCEEEEEeccCCCceEEEEeCCCceEEEeccccccCCCCceeECCC
Confidence            9999977655442 100011223345677899999976655443   58999999988877652 2222 3566788899


Q ss_pred             CCEEEEc
Q 021399          244 LDHVVLG  250 (313)
Q Consensus       244 ~~~~~~~  250 (313)
                      +..+.+.
T Consensus       264 g~~~yv~  270 (381)
T COG3391         264 GKAAYVA  270 (381)
T ss_pred             CCEEEEE
Confidence            8887776

>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases

Probab=95.87  E-value=1.4  Score=40.29  Aligned_cols=68  Identities=19%  Similarity=0.270  Sum_probs=46.8

Q ss_pred             CEEEEeeCCCCeEEEeCCCCcEEEEecCCCCc-----eE-EEEECCCCCeEEEee---------CCCcEEEEECCCCeEE
Q 021399           23 DLLFSCAKDHTPTVWFADNGERLGTYRGHNGA-----VW-CCDVSRDSMTLITGS---------ADQTAKLWNVETGAQL   87 (313)
Q Consensus        23 ~~l~s~s~d~~i~iw~~~~~~~~~~~~~H~~~-----V~-~~~~~~~~~~l~s~s---------~D~~v~vWd~~~~~~~   87 (313)
                      ..++.++.|+.|.-+|.++|+.+..++.....     +. +..+. + ..++.++         .++.+...|..+++.+
T Consensus       111 ~~V~v~~~~g~v~AlD~~TG~~~W~~~~~~~~~~~~~i~ssP~v~-~-~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~  188 (488)
T cd00216         111 RKVFFGTFDGRLVALDAETGKQVWKFGNNDQVPPGYTMTGAPTIV-K-KLVIIGSSGAEFFACGVRGALRAYDVETGKLL  188 (488)
T ss_pred             CeEEEecCCCeEEEEECCCCCEeeeecCCCCcCcceEecCCCEEE-C-CEEEEeccccccccCCCCcEEEEEECCCCcee
Confidence            67777888999999999999998877643221     11 11222 2 3444443         3678899999999998


Q ss_pred             EEecC
Q 021399           88 FTFNF   92 (313)
Q Consensus        88 ~~~~~   92 (313)
                      +....
T Consensus       189 W~~~~  193 (488)
T cd00216         189 WRFYT  193 (488)
T ss_pred             eEeec
Confidence            87754

The alignment model contains an 8-bladed beta-propeller.

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=95.80  E-value=1  Score=38.23  Aligned_cols=225  Identities=12%  Similarity=0.117  Sum_probs=115.2

Q ss_pred             EEccCCC-EEEEeeCCCCeEEEeCCCCcEEEEecCCCCceEEEE-ECCCCCeEEEeeCCCcEEEEECCCCeEEEEec-C-
Q 021399           17 KYNKDGD-LLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCD-VSRDSMTLITGSADQTAKLWNVETGAQLFTFN-F-   92 (313)
Q Consensus        17 ~fs~~g~-~l~s~s~d~~i~iw~~~~~~~~~~~~~H~~~V~~~~-~~~~~~~l~s~s~D~~v~vWd~~~~~~~~~~~-~-   92 (313)
                      .|.++.. ++.+--..+.|.-|+..+++. ..+.... .+.++. ....+ .|+++.  .-+.+++++++..+..+. . 
T Consensus        31 ~w~~~~~~L~w~DI~~~~i~r~~~~~g~~-~~~~~p~-~~~~~~~~d~~g-~Lv~~~--~g~~~~~~~~~~~~t~~~~~~  105 (307)
T COG3386          31 VWDPDRGALLWVDILGGRIHRLDPETGKK-RVFPSPG-GFSSGALIDAGG-RLIACE--HGVRLLDPDTGGKITLLAEPE  105 (307)
T ss_pred             cCcCCCCEEEEEeCCCCeEEEecCCcCce-EEEECCC-CcccceeecCCC-eEEEEc--cccEEEeccCCceeEEecccc
Confidence            4666665 455555667777777765643 2333322 233333 44444 444433  235567776555432221 1 


Q ss_pred             ----CCCeeEEEeecCCeEEEEECCC----ceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEccCCCEEEEe
Q 021399           93 ----DSPARSVDFAVGDKLAVITTDP----FMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISA  164 (313)
Q Consensus        93 ----~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~t~  164 (313)
                          ....+...+.+++.+.+.....    .........++++.     ..+..+.....+-..-+.++|+|+++.+..+
T Consensus       106 ~~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~-----p~g~~~~l~~~~~~~~NGla~SpDg~tly~a  180 (307)
T COG3386         106 DGLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVD-----PDGGVVRLLDDDLTIPNGLAFSPDGKTLYVA  180 (307)
T ss_pred             CCCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEc-----CCCCEEEeecCcEEecCceEECCCCCEEEEE
Confidence                1122344444555554443220    00000001122211     1122333333333445789999999777666


Q ss_pred             e-CCCeEEEEECCC--Cceeee--cccccCceeceEEEEECCCCCEEEEeeCCC-cEEEEECCCCcEEEEEecC-CceeE
Q 021399          165 G-EDAIVRIWDTET--GKLLKE--SDKETGHKKTITSLAKAADGSHFLTGSLDK-SAKLWDARTLELIKTYVTE-RPVNA  237 (313)
Q Consensus       165 ~-~d~~i~lwd~~~--~~~~~~--~~~~~~h~~~v~~~~~s~~~~~l~s~s~dg-~i~iwd~~~~~~~~~~~~~-~~~~~  237 (313)
                      . ..+.|.-|+...  +..-..  ........+..-.++...+|++-+++..+| .|..|+.+ ++++..+..+ ..+.+
T Consensus       181 DT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd-G~l~~~i~lP~~~~t~  259 (307)
T COG3386         181 DTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD-GKLLGEIKLPVKRPTN  259 (307)
T ss_pred             eCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCC-CcEEEEEECCCCCCcc
Confidence            4 447788887652  111000  001111234455566778888776555554 89999998 8988888765 45566


Q ss_pred             EEe-ccCCCEEEEccc
Q 021399          238 VTM-SPLLDHVVLGGG  252 (313)
Q Consensus       238 ~~~-~p~~~~~~~~~~  252 (313)
                      ++| .|..+.+++++.
T Consensus       260 ~~FgG~~~~~L~iTs~  275 (307)
T COG3386         260 PAFGGPDLNTLYITSA  275 (307)
T ss_pred             ceEeCCCcCEEEEEec
Confidence            665 555666666543

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=95.80  E-value=1.4  Score=41.83  Aligned_cols=174  Identities=12%  Similarity=0.129  Sum_probs=97.0

Q ss_pred             ccccccc-eeEEEEccCCCEEEEeeCCCC-----eEEEeCCCC------cEEE--EecCC-----CCceEEEEECCCCCe
Q 021399            6 MKGHERP-LTYLKYNKDGDLLFSCAKDHT-----PTVWFADNG------ERLG--TYRGH-----NGAVWCCDVSRDSMT   66 (313)
Q Consensus         6 l~~h~~~-v~~~~fs~~g~~l~s~s~d~~-----i~iw~~~~~------~~~~--~~~~H-----~~~V~~~~~~~~~~~   66 (313)
                      ++.+..+ |..+-...+-.+|++-+.|+.     ++||+++..      .+++  .+-.|     ..++.+++++.+-+.
T Consensus        60 fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~  139 (933)
T KOG2114|consen   60 FQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNNSPQCLYEHRIFTIKNPTNPSPASSLAVSEDLKT  139 (933)
T ss_pred             heecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCCCCcceeeeeeeeccCCCCCCCcceEEEEEccccE
Confidence            3445555 444433333368888887755     899988743      1221  12222     345677888877667


Q ss_pred             EEEeeCCCcEEEEECCCCeEEEEecCCCCeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCC
Q 021399           67 LITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQ  146 (313)
Q Consensus        67 l~s~s~D~~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  146 (313)
                      +|.|=.+|.|..+.   |...                                         +++.    ..........
T Consensus       140 Iv~Gf~nG~V~~~~---GDi~-----------------------------------------RDrg----sr~~~~~~~~  171 (933)
T KOG2114|consen  140 IVCGFTNGLVICYK---GDIL-----------------------------------------RDRG----SRQDYSHRGK  171 (933)
T ss_pred             EEEEecCcEEEEEc---Ccch-----------------------------------------hccc----cceeeeccCC
Confidence            77766777766542   1110                                         0000    0000111123


Q ss_pred             CceEEEEEccCCCEEEEeeCCCeEEEEECCCCceeeecccccCceeceEEEEECCCCCEEEEeeCCCcEEEEECCCCcEE
Q 021399          147 GRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELI  226 (313)
Q Consensus       147 ~~i~~~~~~~~~~~i~t~~~d~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~  226 (313)
                      .+|+.+.+..++...+.+.....|.+|.+....+...  ....|...+.|..+++....+++++. ..+.+||.....+-
T Consensus       172 ~pITgL~~~~d~~s~lFv~Tt~~V~~y~l~gr~p~~~--~ld~~G~~lnCss~~~~t~qfIca~~-e~l~fY~sd~~~~c  248 (933)
T KOG2114|consen  172 EPITGLALRSDGKSVLFVATTEQVMLYSLSGRTPSLK--VLDNNGISLNCSSFSDGTYQFICAGS-EFLYFYDSDGRGPC  248 (933)
T ss_pred             CCceeeEEecCCceeEEEEecceeEEEEecCCCccee--eeccCCccceeeecCCCCccEEEecC-ceEEEEcCCCccee
Confidence            4677777766655533333346688888874432221  22457778899888876664666654 46899998765555


Q ss_pred             EEEe
Q 021399          227 KTYV  230 (313)
Q Consensus       227 ~~~~  230 (313)
                      ..+.
T Consensus       249 faf~  252 (933)
T KOG2114|consen  249 FAFE  252 (933)
T ss_pred             eeec
Confidence            5554

>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region

Probab=95.55  E-value=0.52  Score=33.04  Aligned_cols=55  Identities=15%  Similarity=0.356  Sum_probs=42.3

Q ss_pred             CEEEEeeCCCeEEEEECCCCceeeecccccCceeceEEEEECCCCCEEEEeeCCCcEEEEEC
Q 021399          159 RTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDA  220 (313)
Q Consensus       159 ~~i~t~~~d~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~dg~i~iwd~  220 (313)
                      +.++.|++|..||+|+-.  ..+.++.    ....|++++-... ..++-+..+|+|-+|+-
T Consensus        16 ~eLlvGs~D~~IRvf~~~--e~~~Ei~----e~~~v~~L~~~~~-~~F~Y~l~NGTVGvY~~   70 (111)
T PF14783_consen   16 NELLVGSDDFEIRVFKGD--EIVAEIT----ETDKVTSLCSLGG-GRFAYALANGTVGVYDR   70 (111)
T ss_pred             ceEEEecCCcEEEEEeCC--cEEEEEe----cccceEEEEEcCC-CEEEEEecCCEEEEEeC
Confidence            578999999999999854  3444442    4567888887766 56899999999998875

>PF15390 DUF4613: Domain of unknown function (DUF4613)

Probab=95.51  E-value=1.9  Score=39.31  Aligned_cols=150  Identities=15%  Similarity=0.238  Sum_probs=84.5

Q ss_pred             ceeEEEEccCCCEEEEee---CCCCeEEEeCCCCcEEEEecCCCCceEEEEECCCC----CeEEEeeCCCcEEEEECC--
Q 021399           12 PLTYLKYNKDGDLLFSCA---KDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDS----MTLITGSADQTAKLWNVE--   82 (313)
Q Consensus        12 ~v~~~~fs~~g~~l~s~s---~d~~i~iw~~~~~~~~~~~~~H~~~V~~~~~~~~~----~~l~s~s~D~~v~vWd~~--   82 (313)
                      ++..++|. ||+.++-..   .+|.++.   .+.+.++.|+    .|..++|.|-+    -.++.....+.|.||-+.  
T Consensus        21 PvhGlaWT-DGkqVvLT~L~l~~gE~kf---Gds~viGqFE----hV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s   92 (671)
T PF15390_consen   21 PVHGLAWT-DGKQVVLTDLQLHNGEPKF---GDSKVIGQFE----HVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPS   92 (671)
T ss_pred             cccceEec-CCCEEEEEeeeeeCCcccc---CCccEeeccc----eeeeeeecCcccCCCCceEEEeccceEEEEEeccC
Confidence            57788997 676655443   2444442   3344555554    47889998753    245556778899999874  


Q ss_pred             ---CCeEE--EEecCC----CCeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEE
Q 021399           83 ---TGAQL--FTFNFD----SPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAV  153 (313)
Q Consensus        83 ---~~~~~--~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~  153 (313)
                         .++..  ++....    --...+-|+|...++++.+..-..+....+          .....+..--..++.|++.+
T Consensus        93 ~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dvSV~~sV~----------~d~srVkaDi~~~G~IhCAC  162 (671)
T PF15390_consen   93 TTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDVSVLPSVH----------CDSSRVKADIKTSGLIHCAC  162 (671)
T ss_pred             ccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCceeEeeeee----------eCCceEEEeccCCceEEEEE
Confidence               22222  222222    123345577766655554332111111111          01222333334578899999


Q ss_pred             EccCCCEEEEeeC-CCeEEEEECCCCc
Q 021399          154 WGPLNRTIISAGE-DAIVRIWDTETGK  179 (313)
Q Consensus       154 ~~~~~~~i~t~~~-d~~i~lwd~~~~~  179 (313)
                      |.++|++++.+-. .=.-++||-..+.
T Consensus       163 WT~DG~RLVVAvGSsLHSyiWd~~qKt  189 (671)
T PF15390_consen  163 WTKDGQRLVVAVGSSLHSYIWDSAQKT  189 (671)
T ss_pred             ecCcCCEEEEEeCCeEEEEEecCchhh
Confidence            9999998877643 3345799965543

>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=95.41  E-value=1.3  Score=36.66  Aligned_cols=56  Identities=25%  Similarity=0.397  Sum_probs=43.4

Q ss_pred             EEEccCCCEEEEeeCC-----CCeEEEeCCCC-cEEEEecCCCCceEEEEECCCCCeEEEee
Q 021399           16 LKYNKDGDLLFSCAKD-----HTPTVWFADNG-ERLGTYRGHNGAVWCCDVSRDSMTLITGS   71 (313)
Q Consensus        16 ~~fs~~g~~l~s~s~d-----~~i~iw~~~~~-~~~~~~~~H~~~V~~~~~~~~~~~l~s~s   71 (313)
                      =.|||||.+|+..-.|     |.|-|||...+ ..+.++..|.-.-..+.+.+||+.++.+.
T Consensus       119 Gvfs~dG~~LYATEndfd~~rGViGvYd~r~~fqrvgE~~t~GiGpHev~lm~DGrtlvvan  180 (366)
T COG3490         119 GVFSPDGRLLYATENDFDPNRGVIGVYDAREGFQRVGEFSTHGIGPHEVTLMADGRTLVVAN  180 (366)
T ss_pred             cccCCCCcEEEeecCCCCCCCceEEEEecccccceecccccCCcCcceeEEecCCcEEEEeC
Confidence            4699999999987665     67889998755 34677888776666788999999887654

>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]

Probab=95.26  E-value=2.6  Score=39.31  Aligned_cols=224  Identities=16%  Similarity=0.141  Sum_probs=98.7

Q ss_pred             CCCEEEEeeCCC------CeEEEeCCCCcEEE--EecCCCCceEEEEECCCCCeEEEeeCC------CcEEEEECCCCeE
Q 021399           21 DGDLLFSCAKDH------TPTVWFADNGERLG--TYRGHNGAVWCCDVSRDSMTLITGSAD------QTAKLWNVETGAQ   86 (313)
Q Consensus        21 ~g~~l~s~s~d~------~i~iw~~~~~~~~~--~~~~H~~~V~~~~~~~~~~~l~s~s~D------~~v~vWd~~~~~~   86 (313)
                      .+..++.||.++      .+..+|..+++-..  .+..... -.++++. ++.+.++||.|      .++..||+...+=
T Consensus       284 ~~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~~~r~-~~~~~~~-~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W  361 (571)
T KOG4441|consen  284 SGKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMPSPRC-RVGVAVL-NGKLYVVGGYDSGSDRLSSVERYDPRTNQW  361 (571)
T ss_pred             CCeEEEECCCCCCCcccceeEEecCCcCcEeecCCCCcccc-cccEEEE-CCEEEEEccccCCCcccceEEEecCCCCce
Confidence            455666777663      56677877764322  2222222 2233333 46788999999      4566777776551


Q ss_pred             EEEecCCCCeeEEE--eecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEccCCCEEEEe
Q 021399           87 LFTFNFDSPARSVD--FAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISA  164 (313)
Q Consensus        87 ~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~t~  164 (313)
                      ........+...+.  ...+-..+++..+....+. .+..++...+...    .+..+.  ..+-...+-.-.+..++.|
T Consensus       362 ~~~a~M~~~R~~~~v~~l~g~iYavGG~dg~~~l~-svE~YDp~~~~W~----~va~m~--~~r~~~gv~~~~g~iYi~G  434 (571)
T KOG4441|consen  362 TPVAPMNTKRSDFGVAVLDGKLYAVGGFDGEKSLN-SVECYDPVTNKWT----PVAPML--TRRSGHGVAVLGGKLYIIG  434 (571)
T ss_pred             eccCCccCccccceeEEECCEEEEEeccccccccc-cEEEecCCCCccc----ccCCCC--cceeeeEEEEECCEEEEEc
Confidence            11111222222222  2223333333333221111 1111111110000    000000  0011111112345667777


Q ss_pred             eCCC------eEEEEECCCCceeeecccccCceeceEEEEECCCCCEEEEeeCCCc-----EEEEECCCCcEEEEEecCC
Q 021399          165 GEDA------IVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKS-----AKLWDARTLELIKTYVTER  233 (313)
Q Consensus       165 ~~d~------~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~dg~-----i~iwd~~~~~~~~~~~~~~  233 (313)
                      |.++      .+..+|+.+.+= .....-.--..... ++ .-++...+.|+.|+.     |..+|.++.+-...-....
T Consensus       435 G~~~~~~~l~sve~YDP~t~~W-~~~~~M~~~R~~~g-~a-~~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~~m~~  511 (571)
T KOG4441|consen  435 GGDGSSNCLNSVECYDPETNTW-TLIAPMNTRRSGFG-VA-VLNGKIYVVGGFDGTSALSSVERYDPETNQWTMVAPMTS  511 (571)
T ss_pred             CcCCCccccceEEEEcCCCCce-eecCCcccccccce-EE-EECCEEEEECCccCCCccceEEEEcCCCCceeEcccCcc
Confidence            7554      467888776541 11111000011111 22 235778888888873     6678887754322211122


Q ss_pred             ceeEEEeccCCCEEEEcccccCc
Q 021399          234 PVNAVTMSPLLDHVVLGGGQDAS  256 (313)
Q Consensus       234 ~~~~~~~~p~~~~~~~~~~~~~~  256 (313)
                      +...+.....++.+++.||.++.
T Consensus       512 ~rs~~g~~~~~~~ly~vGG~~~~  534 (571)
T KOG4441|consen  512 PRSAVGVVVLGGKLYAVGGFDGN  534 (571)
T ss_pred             ccccccEEEECCEEEEEecccCc
Confidence            22333334455677777776553

>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals

Probab=95.20  E-value=1  Score=39.78  Aligned_cols=155  Identities=14%  Similarity=0.155  Sum_probs=79.3

Q ss_pred             ceEEEEECCCCCeEEEeeCCCcEEEEECCCCeEEEEecCCCCeeEEEeecCCeEEEEECCCceeccccceeeeeee---C
Q 021399           54 AVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIAR---D  130 (313)
Q Consensus        54 ~V~~~~~~~~~~~l~s~s~D~~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~  130 (313)
                      .|..++|+++...|+.|-..|-|-||.....+.-.. ....+.....+.+           +...+....+.++..   .
T Consensus         3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~-~~~~~~~~~~~~~-----------~~~~~~~~~l~di~~r~~~   70 (395)
T PF08596_consen    3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGN-REQPPDLDYNFRR-----------FSLNNSPGKLTDISDRAPP   70 (395)
T ss_dssp             -EEEEEEETTTTEEEEEETTS-EEEEEEEE-------------------S-------------GGGSS-SEEE-GGG--T
T ss_pred             eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCc-cCCCcccCccccc-----------ccccCCCcceEEehhhCCc
Confidence            578899999888899999999999887543221100 0000000000000           000011111111111   0


Q ss_pred             CCCCCCceEEEecCCCCceEEEEEccCCCEEEEeeCCCeEEEEECCCCceeeecccc-----cCceeceEEEEEC-----
Q 021399          131 PADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKE-----TGHKKTITSLAKA-----  200 (313)
Q Consensus       131 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~t~~~d~~i~lwd~~~~~~~~~~~~~-----~~h~~~v~~~~~s-----  200 (313)
                      ....+-.+...+...+++|..++.+. -.+++.|.++|.+.|.|++....+......     ......++++.|+     
T Consensus        71 ~~~~gf~P~~l~~~~~g~vtal~~S~-iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~  149 (395)
T PF08596_consen   71 SLKEGFLPLTLLDAKQGPVTALKNSD-IGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLG  149 (395)
T ss_dssp             T-SEEEEEEEEE---S-SEEEEEE-B-TSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-T
T ss_pred             ccccccCchhheeccCCcEeEEecCC-CcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecC
Confidence            00112234455556688999998874 457899999999999999876655442111     1234457777664     


Q ss_pred             CCC---CEEEEeeCCCcEEEEECC
Q 021399          201 ADG---SHFLTGSLDKSAKLWDAR  221 (313)
Q Consensus       201 ~~~---~~l~s~s~dg~i~iwd~~  221 (313)
                      .|+   -.++.|...|.+.+|.+-
T Consensus       150 ~D~ySSi~L~vGTn~G~v~~fkIl  173 (395)
T PF08596_consen  150 GDGYSSICLLVGTNSGNVLTFKIL  173 (395)
T ss_dssp             TSSSEEEEEEEEETTSEEEEEEEE
T ss_pred             CCcccceEEEEEeCCCCEEEEEEe
Confidence            233   368889999999999764

The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.

>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]

Probab=95.19  E-value=0.0066  Score=56.77  Aligned_cols=67  Identities=12%  Similarity=0.133  Sum_probs=46.3

Q ss_pred             eEEEEccCCCEEEEeeCCCCeEEEeCCCCcEEEEecCCCCceEEEE-----------ECCCCCeEEEeeCCCcEEEEEC
Q 021399           14 TYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCD-----------VSRDSMTLITGSADQTAKLWNV   81 (313)
Q Consensus        14 ~~~~fs~~g~~l~s~s~d~~i~iw~~~~~~~~~~~~~H~~~V~~~~-----------~~~~~~~l~s~s~D~~v~vWd~   81 (313)
                      ..+-|-++.-++..+-.++.+++...++... .-+++|...+..++           ++|||+.|+++..||.++.|.+
T Consensus       187 ~wcp~~~~~~~ic~~~~~~~i~lL~~~ra~~-~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Qi  264 (1283)
T KOG1916|consen  187 SWCPIAVNKVYICYGLKGGEIRLLNINRALR-SLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGSVGFYQI  264 (1283)
T ss_pred             eecccccccceeeeccCCCceeEeeechHHH-HHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCccceeee
Confidence            3344455566777777888988876655433 45667876554433           5888888888888998888864

>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]

Probab=95.16  E-value=1.4  Score=35.83  Aligned_cols=69  Identities=13%  Similarity=0.081  Sum_probs=54.7

Q ss_pred             CCEEEEeeCCCCeEEEeCCCCcEEEEecCCCCceE-EEEECCCCCeEEEeeCCCcEEEEECCCCeEEEEec
Q 021399           22 GDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVW-CCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFN   91 (313)
Q Consensus        22 g~~l~s~s~d~~i~iw~~~~~~~~~~~~~H~~~V~-~~~~~~~~~~l~s~s~D~~v~vWd~~~~~~~~~~~   91 (313)
                      |++++-|...|.+++-+.++|.++..+..-+ .|. .....+++.++.-++.|++...-|+.+..++....
T Consensus        63 gdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~-~vk~~a~~d~~~glIycgshd~~~yalD~~~~~cVyksk  132 (354)
T KOG4649|consen   63 GDFVVLGCYSGGLYFLCVKTGSQIWNFVILE-TVKVRAQCDFDGGLIYCGSHDGNFYALDPKTYGCVYKSK  132 (354)
T ss_pred             CCEEEEEEccCcEEEEEecchhheeeeeehh-hhccceEEcCCCceEEEecCCCcEEEecccccceEEecc
Confidence            6778889999999999999998887776532 332 23456788999999999999999999888877654

>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=95.14  E-value=0.0087  Score=53.87  Aligned_cols=117  Identities=18%  Similarity=0.256  Sum_probs=70.7

Q ss_pred             cCCCCceEEEEEccCCCEEEEee-----CCCeEEEEECCCC--ceeeecccccCceeceEEEEECCCCCEEEEeeCCCcE
Q 021399          143 KGPQGRINRAVWGPLNRTIISAG-----EDAIVRIWDTETG--KLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSA  215 (313)
Q Consensus       143 ~~~~~~i~~~~~~~~~~~i~t~~-----~d~~i~lwd~~~~--~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~dg~i  215 (313)
                      .++....++++|++.+..++.+|     .|..+.|||+.++  .+........+......+++|..+.+.+.+|.....+
T Consensus        99 p~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi~s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~  178 (783)
T KOG1008|consen   99 PGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDINSLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSV  178 (783)
T ss_pred             ccccccccccccccccHHHHHhhhhhhcccCCccceecccccCCCccccccccccccCccccccccCcchhhcccccchh
Confidence            44566778899988754444444     3557999998876  2222111111233455688999999999999999999


Q ss_pred             EEEECCCCcEEEEEecCCceeEEEeccC-CCEEEEcccccCceeEeec
Q 021399          216 KLWDARTLELIKTYVTERPVNAVTMSPL-LDHVVLGGGQDASAVTTTD  262 (313)
Q Consensus       216 ~iwd~~~~~~~~~~~~~~~~~~~~~~p~-~~~~~~~~~~~~~~~~~~~  262 (313)
                      .++|++-...-........+..+...|. .++++.. .  ...+..||
T Consensus       179 ~ifdlRqs~~~~~svnTk~vqG~tVdp~~~nY~cs~-~--dg~iAiwD  223 (783)
T KOG1008|consen  179 HIFDLRQSLDSVSSVNTKYVQGITVDPFSPNYFCSN-S--DGDIAIWD  223 (783)
T ss_pred             hhhhhhhhhhhhhhhhhhhcccceecCCCCCceecc-c--cCceeecc
Confidence            9999983221111112234556777784 4444322 2  34455555

>KOG2444 consensus WD40 repeat protein [General function prediction only]

Probab=95.08  E-value=0.046  Score=43.18  Aligned_cols=63  Identities=27%  Similarity=0.173  Sum_probs=45.4

Q ss_pred             CCCEEEEeeCCCCeEEEeCCCCcEEEEecCCC-CceEEEEECCCCCeEEEe--eCCCcEEEEECCC
Q 021399           21 DGDLLFSCAKDHTPTVWFADNGERLGTYRGHN-GAVWCCDVSRDSMTLITG--SADQTAKLWNVET   83 (313)
Q Consensus        21 ~g~~l~s~s~d~~i~iw~~~~~~~~~~~~~H~-~~V~~~~~~~~~~~l~s~--s~D~~v~vWd~~~   83 (313)
                      ++.+..++..|+.||.|+.+.++.+.....|. .++.....+..++.++.+  |.|..++.|++..
T Consensus       113 ~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve~  178 (238)
T KOG2444|consen  113 DSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFESGEELIVVGSDEFLKIADTSHDRVLKKWNVEK  178 (238)
T ss_pred             ccceeEEeccCCceeeeccccCceeeeeccccCCCcceeEEecCCceEEeeccccchhhhhcchhh
Confidence            34578888999999999999999988888887 455444444455556666  6666666666643

>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family

Probab=95.07  E-value=2.8  Score=38.69  Aligned_cols=70  Identities=11%  Similarity=0.044  Sum_probs=45.4

Q ss_pred             CCEEEEeeCCCCeEEEeCCCCcEEEEecC--CCC--ceEE-EEECCCCCeEEEee-----CCCcEEEEECCCCeEEEEec
Q 021399           22 GDLLFSCAKDHTPTVWFADNGERLGTYRG--HNG--AVWC-CDVSRDSMTLITGS-----ADQTAKLWNVETGAQLFTFN   91 (313)
Q Consensus        22 g~~l~s~s~d~~i~iw~~~~~~~~~~~~~--H~~--~V~~-~~~~~~~~~l~s~s-----~D~~v~vWd~~~~~~~~~~~   91 (313)
                      +.+++.++.|+.+.-.|.++|+.+.....  +..  .+.+ ..+. ++.+++..+     .+|.|...|.++++.++...
T Consensus       120 ~~~v~v~t~dg~l~ALDa~TGk~~W~~~~~~~~~~~~~tssP~v~-~g~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~  198 (527)
T TIGR03075       120 DGKVFFGTLDARLVALDAKTGKVVWSKKNGDYKAGYTITAAPLVV-KGKVITGISGGEFGVRGYVTAYDAKTGKLVWRRY  198 (527)
T ss_pred             CCEEEEEcCCCEEEEEECCCCCEEeecccccccccccccCCcEEE-CCEEEEeecccccCCCcEEEEEECCCCceeEecc
Confidence            34677788899999999999999876652  221  1211 1111 344443322     37899999999999988765


Q ss_pred             C
Q 021399           92 F   92 (313)
Q Consensus        92 ~   92 (313)
                      .
T Consensus       199 ~  199 (527)
T TIGR03075       199 T  199 (527)
T ss_pred             C
Confidence            3

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.

>PHA02713 hypothetical protein; Provisional

Probab=94.85  E-value=3.3  Score=38.56  Aligned_cols=63  Identities=6%  Similarity=0.091  Sum_probs=33.6

Q ss_pred             CCEEEEeeCC------CeEEEEECCCCceeeecccccCceeceEEEEECCCCCEEEEeeCCC--cEEEEECCC
Q 021399          158 NRTIISAGED------AIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDK--SAKLWDART  222 (313)
Q Consensus       158 ~~~i~t~~~d------~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~dg--~i~iwd~~~  222 (313)
                      +..++.||.+      ..+..||+.+......+............+++  ++...+.|+.|+  .+-.||..+
T Consensus       464 ~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~~~~~~~--~~~iyv~Gg~~~~~~~e~yd~~~  534 (557)
T PHA02713        464 DDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLSALHTILH--DNTIMMLHCYESYMLQDTFNVYT  534 (557)
T ss_pred             CEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcccccceeEEE--CCEEEEEeeecceeehhhcCccc
Confidence            4556667654      24678998762122222221112223333333  678888999888  445555544

>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit

Probab=94.74  E-value=2.4  Score=36.29  Aligned_cols=122  Identities=14%  Similarity=0.178  Sum_probs=65.0

Q ss_pred             CeEEEEECCCC----ceeeecccccCceeceEEEEECCCCCEEEEeeCCCcEEEEECCCCc-EEEEEecCCceeEEEecc
Q 021399          168 AIVRIWDTETG----KLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLE-LIKTYVTERPVNAVTMSP  242 (313)
Q Consensus       168 ~~i~lwd~~~~----~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~-~~~~~~~~~~~~~~~~~p  242 (313)
                      |.|.++++...    ..+..+.. ....+.|++++.- ++. |+.+. .+.|.+|++...+ ....-....+...++...
T Consensus        62 Gri~v~~i~~~~~~~~~l~~i~~-~~~~g~V~ai~~~-~~~-lv~~~-g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~  137 (321)
T PF03178_consen   62 GRILVFEISESPENNFKLKLIHS-TEVKGPVTAICSF-NGR-LVVAV-GNKLYVYDLDNSKTLLKKAFYDSPFYITSLSV  137 (321)
T ss_dssp             EEEEEEEECSS-----EEEEEEE-EEESS-EEEEEEE-TTE-EEEEE-TTEEEEEEEETTSSEEEEEEE-BSSSEEEEEE
T ss_pred             cEEEEEEEEcccccceEEEEEEE-EeecCcceEhhhh-CCE-EEEee-cCEEEEEEccCcccchhhheecceEEEEEEec
Confidence            88999988763    22222211 2346789998765 444 44443 4789999998877 544444444445556666


Q ss_pred             CCCEEEEcccccCceeEeeccCCCceeeeeeehhhhhhhccccccccceeEEEECCCCCeeE
Q 021399          243 LLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKRYG  304 (313)
Q Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~fspdgk~~~  304 (313)
                      .++.++++....+..+..++.....+..-          .. ......++++.|=+|++.+.
T Consensus       138 ~~~~I~vgD~~~sv~~~~~~~~~~~l~~v----------a~-d~~~~~v~~~~~l~d~~~~i  188 (321)
T PF03178_consen  138 FKNYILVGDAMKSVSLLRYDEENNKLILV----------AR-DYQPRWVTAAEFLVDEDTII  188 (321)
T ss_dssp             ETTEEEEEESSSSEEEEEEETTTE-EEEE----------EE-ESS-BEEEEEEEE-SSSEEE
T ss_pred             cccEEEEEEcccCEEEEEEEccCCEEEEE----------Ee-cCCCccEEEEEEecCCcEEE
Confidence            67777776555554444444322222110          00 01244677777776665333

CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....

>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]

Probab=94.66  E-value=2  Score=35.03  Aligned_cols=73  Identities=12%  Similarity=0.028  Sum_probs=54.1

Q ss_pred             CCEEEEeeCCCeEEEEECCCCceeeecccccCceeceEEEEECCCCCEEEEeeCCCcEEEEECCCCcEEEEEecCC
Q 021399          158 NRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTER  233 (313)
Q Consensus       158 ~~~i~t~~~d~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~  233 (313)
                      +++++.|...|.++..+.+++..+..+...  ..-.+.+ ...+++..|..|+.|++...-|.++..++.+.+...
T Consensus        63 gdfVV~GCy~g~lYfl~~~tGs~~w~f~~~--~~vk~~a-~~d~~~glIycgshd~~~yalD~~~~~cVykskcgG  135 (354)
T KOG4649|consen   63 GDFVVLGCYSGGLYFLCVKTGSQIWNFVIL--ETVKVRA-QCDFDGGLIYCGSHDGNFYALDPKTYGCVYKSKCGG  135 (354)
T ss_pred             CCEEEEEEccCcEEEEEecchhheeeeeeh--hhhccce-EEcCCCceEEEecCCCcEEEecccccceEEecccCC
Confidence            456888999999999999998665544321  1112222 356788999999999999999999999988765433

>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]

Probab=94.26  E-value=0.22  Score=48.07  Aligned_cols=73  Identities=19%  Similarity=0.378  Sum_probs=54.7

Q ss_pred             CCCceEEEEEccCCCEEEEeeCCCeEEEEECCCCceeeecccccCceeceEEEEECCCCCEEEEeeCCCcEEEEE
Q 021399          145 PQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWD  219 (313)
Q Consensus       145 ~~~~i~~~~~~~~~~~i~t~~~d~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~dg~i~iwd  219 (313)
                      .++++.+++|+.+|..++.|-.+|.|.+||+..++.++.+.....-...+.-+.+..+++.++++..-|.  +|.
T Consensus       129 v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap~t~vi~v~~t~~nS~llt~D~~Gs--f~~  201 (1206)
T KOG2079|consen  129 VQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEHGAPVTGVIFVGRTSQNSKLLTSDTGGS--FWK  201 (1206)
T ss_pred             cCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeeecCCccceEEEEEEeCCCcEEEEccCCCc--eEE
Confidence            3578999999999999999999999999999988887766432222233444556667777888887775  554

>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus

Probab=94.24  E-value=0.77  Score=40.58  Aligned_cols=86  Identities=14%  Similarity=0.189  Sum_probs=60.4

Q ss_pred             ccccccceeEEEEccCCCEEEEeeCCCCeEEEeCCCCcEEEEecCCCCce-EEEEE-CCCC---------------C--e
Q 021399            6 MKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAV-WCCDV-SRDS---------------M--T   66 (313)
Q Consensus         6 l~~h~~~v~~~~fs~~g~~l~s~s~d~~i~iw~~~~~~~~~~~~~H~~~V-~~~~~-~~~~---------------~--~   66 (313)
                      |......+.+++.+|++.+.+....=|+|.++|+.++..++..+|.+++= .-+.. .+..               .  +
T Consensus       303 l~D~~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~~~l~L  382 (415)
T PF14655_consen  303 LPDSKREGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSSSRFALFL  382 (415)
T ss_pred             eccCCceEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhccCccceEEEEEeecccccccccccccCCCCcceEEE
Confidence            34455567889999999988888777999999999999988888876532 11111 1111               1  2


Q ss_pred             EEEeeCCCcEEEEECCCCeEEEEec
Q 021399           67 LITGSADQTAKLWNVETGAQLFTFN   91 (313)
Q Consensus        67 l~s~s~D~~v~vWd~~~~~~~~~~~   91 (313)
                      ++=+-.-|.|.||.+..+..+..+.
T Consensus       383 vIyaprRg~lEvW~~~~g~Rv~a~~  407 (415)
T PF14655_consen  383 VIYAPRRGILEVWSMRQGPRVAAFN  407 (415)
T ss_pred             EEEeccCCeEEEEecCCCCEEEEEE
Confidence            2335678999999999887765544

>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length

Probab=93.99  E-value=2  Score=40.05  Aligned_cols=96  Identities=21%  Similarity=0.259  Sum_probs=63.1

Q ss_pred             EEeeCCCeEEEEECCCCceeeecccccCceeceEEEEE--CCCCCEEEEeeCCCcEEEEECC---------CCcEEEEEe
Q 021399          162 ISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAK--AADGSHFLTGSLDKSAKLWDAR---------TLELIKTYV  230 (313)
Q Consensus       162 ~t~~~d~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~--s~~~~~l~s~s~dg~i~iwd~~---------~~~~~~~~~  230 (313)
                      ++-+....+.|||.+.+.+-.+.  .....+.|.++.|  .|+|+.|++.+..+.|.++.-.         +..+++++.
T Consensus        45 ~V~~~~~~LtIWD~~~~~lE~~~--~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~~~~p~w~~i~~i~  122 (631)
T PF12234_consen   45 VVDSSRSELTIWDTRSGVLEYEE--SFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYTNKGPSWAPIRKID  122 (631)
T ss_pred             EEECCCCEEEEEEcCCcEEEEee--eecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhhcCCcccceeEEEE
Confidence            33444567999999877643322  1234678999887  4789999999999999998531         224455542


Q ss_pred             ----cCCceeEEEeccCCCEEEEcccccCceeEeecc
Q 021399          231 ----TERPVNAVTMSPLLDHVVLGGGQDASAVTTTDH  263 (313)
Q Consensus       231 ----~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~  263 (313)
                          .+.+|...+|.++|.-++.+|    +.+.++|.
T Consensus       123 i~~~T~h~Igds~Wl~~G~LvV~sG----Nqlfv~dk  155 (631)
T PF12234_consen  123 ISSHTPHPIGDSIWLKDGTLVVGSG----NQLFVFDK  155 (631)
T ss_pred             eecCCCCCccceeEecCCeEEEEeC----CEEEEECC
Confidence                246788899988876554443    33455554

This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.

>KOG2444 consensus WD40 repeat protein [General function prediction only]

Probab=93.97  E-value=0.24  Score=39.30  Aligned_cols=63  Identities=16%  Similarity=0.241  Sum_probs=41.4

Q ss_pred             CEEEEeeCCCeEEEEECCCCceeeecccccCce-eceEEEEECCCCCEEEEe--eCCCcEEEEECCCCc
Q 021399          159 RTIISAGEDAIVRIWDTETGKLLKESDKETGHK-KTITSLAKAADGSHFLTG--SLDKSAKLWDARTLE  224 (313)
Q Consensus       159 ~~i~t~~~d~~i~lwd~~~~~~~~~~~~~~~h~-~~v~~~~~s~~~~~l~s~--s~dg~i~iwd~~~~~  224 (313)
                      ....++..|+.||.|+.+-.+.+....   .|+ ..+..+..+..+.+++++  |.|..++.|+++...
T Consensus       115 ~~~c~~~~dg~ir~~n~~p~k~~g~~g---~h~~~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve~~~  180 (238)
T KOG2444|consen  115 SLGCVGAQDGRIRACNIKPNKVLGYVG---QHNFESGEELIVVGSDEFLKIADTSHDRVLKKWNVEKIK  180 (238)
T ss_pred             ceeEEeccCCceeeeccccCceeeeec---cccCCCcceeEEecCCceEEeeccccchhhhhcchhhhh
Confidence            356788999999999987666554333   344 344444444555667776  777777777776433

>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length

Probab=93.91  E-value=4.5  Score=37.87  Aligned_cols=115  Identities=14%  Similarity=0.289  Sum_probs=60.3

Q ss_pred             EEECCCCCeEEEeeCCCcEEEEECCCCeEEEEecC--CCCeeEEEeec---CCeEEEEECCCceeccccceeeeeeeCCC
Q 021399           58 CDVSRDSMTLITGSADQTAKLWNVETGAQLFTFNF--DSPARSVDFAV---GDKLAVITTDPFMELNSAIHVKRIARDPA  132 (313)
Q Consensus        58 ~~~~~~~~~l~s~s~D~~v~vWd~~~~~~~~~~~~--~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  132 (313)
                      +.-+.-++..+.-+....+.|||...+.......+  ..++..++|..   +..++.+.......+....+.......+.
T Consensus        35 i~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~~~~p~  114 (631)
T PF12234_consen   35 ISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYTNKGPS  114 (631)
T ss_pred             EeecccCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhhcCCcc
Confidence            33344455444444556799999998876655444  66788887753   33444444443333222221111111110


Q ss_pred             CCCCceEEEecCCC-CceEEEEEccCCCEEEEeeCCCeEEEEEC
Q 021399          133 DQGGESVLILKGPQ-GRINRAVWGPLNRTIISAGEDAIVRIWDT  175 (313)
Q Consensus       133 ~~~~~~~~~~~~~~-~~i~~~~~~~~~~~i~t~~~d~~i~lwd~  175 (313)
                      -. ......+.++. .+|.+..|-++|..++.+|  +.+.|+|-
T Consensus       115 w~-~i~~i~i~~~T~h~Igds~Wl~~G~LvV~sG--Nqlfv~dk  155 (631)
T PF12234_consen  115 WA-PIRKIDISSHTPHPIGDSIWLKDGTLVVGSG--NQLFVFDK  155 (631)
T ss_pred             cc-eeEEEEeecCCCCCccceeEecCCeEEEEeC--CEEEEECC
Confidence            00 01111223333 5788999999987655444  56788874

This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.

>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A

Probab=93.44  E-value=4.3  Score=34.40  Aligned_cols=159  Identities=11%  Similarity=0.122  Sum_probs=72.3

Q ss_pred             cccceeEEEEccCCCEEEEeeCCCCeEEEeCCCCcEEEEecCCCCceEEEEECCCCCeEEEeeCCCcEEEEECCCCeEEE
Q 021399            9 HERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLF   88 (313)
Q Consensus         9 h~~~v~~~~fs~~g~~l~s~s~d~~i~iw~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~v~vWd~~~~~~~~   88 (313)
                      -...+..+.-++||++++.++......-||--...-....+.-...|.++.|.|++.+.+.+ +.|.++.=+.......+
T Consensus       143 ~~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~lw~~~-~Gg~~~~s~~~~~~~~w  221 (302)
T PF14870_consen  143 TSGSINDITRSSDGRYVAVSSRGNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGNLWMLA-RGGQIQFSDDPDDGETW  221 (302)
T ss_dssp             ----EEEEEE-TTS-EEEEETTSSEEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS-EEEEE-TTTEEEEEE-TTEEEEE
T ss_pred             CcceeEeEEECCCCcEEEEECcccEEEEecCCCccceEEccCccceehhceecCCCCEEEEe-CCcEEEEccCCCCcccc
Confidence            34567788889999988877665555667533222222233345789999999998765543 66766654311110000


Q ss_pred             EecCCCCeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEccCCCEEEEeeCCC
Q 021399           89 TFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDA  168 (313)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~t~~~d~  168 (313)
                      ...                       ..              +.          ....-.+..++|.+..+..++|+. |
T Consensus       222 ~~~-----------------------~~--------------~~----------~~~~~~~ld~a~~~~~~~wa~gg~-G  253 (302)
T PF14870_consen  222 SEP-----------------------II--------------PI----------KTNGYGILDLAYRPPNEIWAVGGS-G  253 (302)
T ss_dssp             --------------------------B---------------TT----------SS--S-EEEEEESSSS-EEEEEST-T
T ss_pred             ccc-----------------------cC--------------Cc----------ccCceeeEEEEecCCCCEEEEeCC-c
Confidence            000                       00              00          000113566778877776665554 4


Q ss_pred             eEEEEECCCCceeeecccccCceeceEEEEECCCCCEEEEeeCCCcEEEE
Q 021399          169 IVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLW  218 (313)
Q Consensus       169 ~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~dg~i~iw  218 (313)
                      .+ +.....++..++......-......+.|..+.+-++ -+.+|.+.-|
T Consensus       254 ~l-~~S~DgGktW~~~~~~~~~~~n~~~i~f~~~~~gf~-lG~~G~ll~~  301 (302)
T PF14870_consen  254 TL-LVSTDGGKTWQKDRVGENVPSNLYRIVFVNPDKGFV-LGQDGVLLRY  301 (302)
T ss_dssp             -E-EEESSTTSS-EE-GGGTTSSS---EEEEEETTEEEE-E-STTEEEEE
T ss_pred             cE-EEeCCCCccceECccccCCCCceEEEEEcCCCceEE-ECCCcEEEEe
Confidence            43 344555665554433223345677777765544444 4557766544

>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea

Probab=93.34  E-value=5.4  Score=35.31  Aligned_cols=135  Identities=15%  Similarity=0.099  Sum_probs=58.1

Q ss_pred             eEEEEECCCCceeeecccccCceeceEEEEECCCCCEEEEee--------------------CCCcEEEEECCCCcEEEE
Q 021399          169 IVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGS--------------------LDKSAKLWDARTLELIKT  228 (313)
Q Consensus       169 ~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s--------------------~dg~i~iwd~~~~~~~~~  228 (313)
                      -+-+.|-++.....+-....+...--..+-+.|..+.++|..                    .-.++.+||+++.+.+++
T Consensus       158 gf~llD~~tf~v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~  237 (461)
T PF05694_consen  158 GFVLLDGETFEVKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQT  237 (461)
T ss_dssp             EEEEE-TTT--EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEE
T ss_pred             cEEEEcCccccccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeE
Confidence            455666655444433322112223345566667767666653                    346799999999999999


Q ss_pred             EecCC---ceeE--EEeccCCCEEEEcccccCceeEeeccCCCceeee-eeehhhh--------hhhccccccccceeEE
Q 021399          229 YVTER---PVNA--VTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAK-FFDKILQ--------EEIGGVKGHFGPINAL  294 (313)
Q Consensus       229 ~~~~~---~~~~--~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~--------~~~~~~~~h~~~V~~~  294 (313)
                      +....   ..-.  -++.|...+-++++.-....+.++....+.+..+ ..+....        ..+..+.+-..-|++|
T Consensus       238 idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI  317 (461)
T PF05694_consen  238 IDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDI  317 (461)
T ss_dssp             EES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE------E
T ss_pred             EecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCCCceEeE
Confidence            86432   1222  3347777766666543333344444344554332 2222111        1223344446778999


Q ss_pred             EECCCCCee
Q 021399          295 AFNPDGKRY  303 (313)
Q Consensus       295 ~fspdgk~~  303 (313)
                      .+|.|.|.|
T Consensus       318 ~iSlDDrfL  326 (461)
T PF05694_consen  318 LISLDDRFL  326 (461)
T ss_dssp             EE-TTS-EE
T ss_pred             EEccCCCEE
Confidence            999999875

The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.

>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]

Probab=93.25  E-value=7  Score=36.50  Aligned_cols=63  Identities=11%  Similarity=0.082  Sum_probs=36.4

Q ss_pred             CCCEEEEeeCC------CCeEEEeCCCCcEEE--EecCCCCceEEEEECCCCCeEEEeeCCCc-----EEEEECCCCe
Q 021399           21 DGDLLFSCAKD------HTPTVWFADNGERLG--TYRGHNGAVWCCDVSRDSMTLITGSADQT-----AKLWNVETGA   85 (313)
Q Consensus        21 ~g~~l~s~s~d------~~i~iw~~~~~~~~~--~~~~H~~~V~~~~~~~~~~~l~s~s~D~~-----v~vWd~~~~~   85 (313)
                      +|...++||.|      ..+..||..+.+-..  .+...+.......  -+|.+.+.||.||.     +..||+.+.+
T Consensus       332 ~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~a~M~~~R~~~~v~~--l~g~iYavGG~dg~~~l~svE~YDp~~~~  407 (571)
T KOG4441|consen  332 NGKLYVVGGYDSGSDRLSSVERYDPRTNQWTPVAPMNTKRSDFGVAV--LDGKLYAVGGFDGEKSLNSVECYDPVTNK  407 (571)
T ss_pred             CCEEEEEccccCCCcccceEEEecCCCCceeccCCccCccccceeEE--ECCEEEEEeccccccccccEEEecCCCCc
Confidence            57788888888      234566666655221  1111111111111  25788899999854     7788877654

>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea

Probab=93.20  E-value=5.7  Score=35.17  Aligned_cols=152  Identities=15%  Similarity=0.144  Sum_probs=67.4

Q ss_pred             ccCCCEEEEee--CC----CCeEEEeCCCCcEEEEecCCCC---ceEEEEECCCCCeEEEeeC-----------------
Q 021399           19 NKDGDLLFSCA--KD----HTPTVWFADNGERLGTYRGHNG---AVWCCDVSRDSMTLITGSA-----------------   72 (313)
Q Consensus        19 s~~g~~l~s~s--~d----~~i~iw~~~~~~~~~~~~~H~~---~V~~~~~~~~~~~l~s~s~-----------------   72 (313)
                      -|+|+.++|+=  .+    |-+.+.|-++-+.+...+...+   .-....|.|..+.++|...                 
T Consensus       138 lp~G~imIS~lGd~~G~g~Ggf~llD~~tf~v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~  217 (461)
T PF05694_consen  138 LPDGRIMISALGDADGNGPGGFVLLDGETFEVKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEA  217 (461)
T ss_dssp             -SS--EEEEEEEETTS-S--EEEEE-TTT--EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---TTTHHH
T ss_pred             cCCccEEEEeccCCCCCCCCcEEEEcCccccccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhc
Confidence            47899998853  22    3456778777777666654322   2234556676666666442                 


Q ss_pred             ---CCcEEEEECCCCeEEEEecCCCC---eeEEEeecC--CeEEEE---ECCCceeccc-cceeeeeeeCCCCCCCceEE
Q 021399           73 ---DQTAKLWNVETGAQLFTFNFDSP---ARSVDFAVG--DKLAVI---TTDPFMELNS-AIHVKRIARDPADQGGESVL  140 (313)
Q Consensus        73 ---D~~v~vWd~~~~~~~~~~~~~~~---~~~~~~~~~--~~~~~~---~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~  140 (313)
                         -.++.+||..+.+.++++.....   ...+.|..+  .....+   .+...+.... ....|.         .+.+.
T Consensus       218 ~~yG~~l~vWD~~~r~~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~---------a~kVi  288 (461)
T PF05694_consen  218 GKYGHSLHVWDWSTRKLLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWA---------AEKVI  288 (461)
T ss_dssp             H-S--EEEEEETTTTEEEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEE---------EEEEE
T ss_pred             ccccCeEEEEECCCCcEeeEEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCee---------eeEEE
Confidence               36799999999999988876532   334444432  221111   1111111111 000010         01111


Q ss_pred             EecC--------C---------CCceEEEEEccCCCEE-EEeeCCCeEEEEECCCCc
Q 021399          141 ILKG--------P---------QGRINRAVWGPLNRTI-ISAGEDAIVRIWDTETGK  179 (313)
Q Consensus       141 ~~~~--------~---------~~~i~~~~~~~~~~~i-~t~~~d~~i~lwd~~~~~  179 (313)
                      .+..        +         ..-|+.+.++.+++++ +++-.+|.||.||+....
T Consensus       289 ~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP~  345 (461)
T PF05694_consen  289 DIPAKKVEGWILPEMLKPFGAVPPLITDILISLDDRFLYVSNWLHGDVRQYDISDPF  345 (461)
T ss_dssp             EE--EE--SS---GGGGGG-EE------EEE-TTS-EEEEEETTTTEEEEEE-SSTT
T ss_pred             ECCCcccCcccccccccccccCCCceEeEEEccCCCEEEEEcccCCcEEEEecCCCC
Confidence            1110        0         2346788899988876 566789999999987643

The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.

>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=93.18  E-value=0.13  Score=28.42  Aligned_cols=22  Identities=32%  Similarity=0.336  Sum_probs=16.6

Q ss_pred             ccceeEEEECCCCCeeEEEEEE
Q 021399          288 FGPINALAFNPDGKRYGFLLLQ  309 (313)
Q Consensus       288 ~~~V~~~~fspdgk~~~~~~~~  309 (313)
                      .+.-...+||||||+++|..-+
T Consensus         8 ~~~~~~p~~SpDGk~i~f~s~~   29 (39)
T PF07676_consen    8 PGDDGSPAWSPDGKYIYFTSNR   29 (39)
T ss_dssp             SSSEEEEEE-TTSSEEEEEEEC
T ss_pred             CccccCEEEecCCCEEEEEecC
Confidence            4456778999999999998653

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....

>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins

Probab=92.92  E-value=0.56  Score=26.56  Aligned_cols=31  Identities=16%  Similarity=0.210  Sum_probs=25.7

Q ss_pred             cceeEEEEccC-C--CEEEEeeCCCCeEEEeCCC
Q 021399           11 RPLTYLKYNKD-G--DLLFSCAKDHTPTVWFADN   41 (313)
Q Consensus        11 ~~v~~~~fs~~-g--~~l~s~s~d~~i~iw~~~~   41 (313)
                      +.|.++.|||+ +  ++|+-+-.-+.|.|+|+.+
T Consensus         1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~   34 (43)
T PF10313_consen    1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS   34 (43)
T ss_pred             CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence            46899999975 4  5888888889999999874

It contains a characteristic DLL sequence motif.

>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates

Probab=92.89  E-value=0.82  Score=42.42  Aligned_cols=73  Identities=18%  Similarity=0.237  Sum_probs=43.5

Q ss_pred             CCCEEEEeeCCCeEEEEECCC----Cceeeeccccc-------------------CceeceEEEEECC----CCCEEEEe
Q 021399          157 LNRTIISAGEDAIVRIWDTET----GKLLKESDKET-------------------GHKKTITSLAKAA----DGSHFLTG  209 (313)
Q Consensus       157 ~~~~i~t~~~d~~i~lwd~~~----~~~~~~~~~~~-------------------~h~~~v~~~~~s~----~~~~l~s~  209 (313)
                      +...++.+..||.+.......    +..........                   .-.....+++.+.    +..++++.
T Consensus       157 ~~~~l~v~~~dG~ll~l~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~tl  236 (547)
T PF11715_consen  157 SEANLVVSLQDGGLLRLKRSSGDSDGSVWSEELFNDSSWLRSLSGLFPWSYRGDNSSSSVAASLAVSSSEINDDTFLFTL  236 (547)
T ss_dssp             SSSBEEEEESSS-EEEEEES----SSS-EE----STHHHHHCCTTTS-TT---SSSS---EEEEEE-----ETTTEEEEE
T ss_pred             CCCEEEEEECCCCeEEEECCcccCCCCeeEEEEeCCCchhhhhhCcCCcccccCCCCCCccceEEEecceeCCCCEEEEE
Confidence            455677778888877766543    22222111100                   0123455566666    77899999


Q ss_pred             eCCCcEEEEECCCCcEEEEE
Q 021399          210 SLDKSAKLWDARTLELIKTY  229 (313)
Q Consensus       210 s~dg~i~iwd~~~~~~~~~~  229 (313)
                      +.|+++|+||+++++++.+.
T Consensus       237 ~~D~~LRiW~l~t~~~~~~~  256 (547)
T PF11715_consen  237 SRDHTLRIWSLETGQCLATI  256 (547)
T ss_dssp             ETTSEEEEEETTTTCEEEEE
T ss_pred             eCCCeEEEEECCCCeEEEEe
Confidence            99999999999999997765

The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.

>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=92.81  E-value=7.2  Score=35.27  Aligned_cols=32  Identities=19%  Similarity=0.477  Sum_probs=24.3

Q ss_pred             eEEEEEccCC---CEEEEeeCCCeEEEEECCCCce
Q 021399          149 INRAVWGPLN---RTIISAGEDAIVRIWDTETGKL  180 (313)
Q Consensus       149 i~~~~~~~~~---~~i~t~~~d~~i~lwd~~~~~~  180 (313)
                      +..+.|+|++   ..++.-+.|..||+||......
T Consensus       168 l~Qa~WHP~S~~D~hL~iL~sdnviRiy~lS~~te  202 (741)
T KOG4460|consen  168 LKQAAWHPSSILDPHLVLLTSDNVIRIYSLSEPTE  202 (741)
T ss_pred             eeeccccCCccCCceEEEEecCcEEEEEecCCcch
Confidence            4567788875   5777788899999999866443

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=92.77  E-value=5.5  Score=33.86  Aligned_cols=70  Identities=14%  Similarity=0.128  Sum_probs=43.5

Q ss_pred             eeEEEEccCCCEEEEeeC---------CCCeEEEeCC-CCcEEEEecCCCCceEEEEECCCCCeEEEeeC-CCcEEEEEC
Q 021399           13 LTYLKYNKDGDLLFSCAK---------DHTPTVWFAD-NGERLGTYRGHNGAVWCCDVSRDSMTLITGSA-DQTAKLWNV   81 (313)
Q Consensus        13 v~~~~fs~~g~~l~s~s~---------d~~i~iw~~~-~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~-D~~v~vWd~   81 (313)
                      .+.+...|+|.+-++...         -..-+||.+. .+..+..+..|-..-+.++||||++.|+.+.. .+.|.-|++
T Consensus       113 ~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p~g~~~~l~~~~~~~~NGla~SpDg~tly~aDT~~~~i~r~~~  192 (307)
T COG3386         113 PNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDPDGGVVRLLDDDLTIPNGLAFSPDGKTLYVADTPANRIHRYDL  192 (307)
T ss_pred             CCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcCCCCEEEeecCcEEecCceEECCCCCEEEEEeCCCCeEEEEec
Confidence            456777888887776544         1112466555 45555555555444477999999987766654 356665555


Q ss_pred             C
Q 021399           82 E   82 (313)
Q Consensus        82 ~   82 (313)
                      .
T Consensus       193 d  193 (307)
T COG3386         193 D  193 (307)
T ss_pred             C
Confidence            4

>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases

Probab=92.75  E-value=5.9  Score=34.13  Aligned_cols=104  Identities=13%  Similarity=0.170  Sum_probs=54.2

Q ss_pred             eEEEEEccCCCEEEEeeCCCeEEEEECCCCce---eeec-ccccCceeceEEEEECCC----CCEEEEeeCC--------
Q 021399          149 INRAVWGPLNRTIISAGEDAIVRIWDTETGKL---LKES-DKETGHKKTITSLAKAAD----GSHFLTGSLD--------  212 (313)
Q Consensus       149 i~~~~~~~~~~~i~t~~~d~~i~lwd~~~~~~---~~~~-~~~~~h~~~v~~~~~s~~----~~~l~s~s~d--------  212 (313)
                      -..++|.|+++.++ +...|.|++++ ..+..   +... ............++++|+    +...++.+..        
T Consensus         4 P~~~a~~pdG~l~v-~e~~G~i~~~~-~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~~~~   81 (331)
T PF07995_consen    4 PRSMAFLPDGRLLV-AERSGRIWVVD-KDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGGDND   81 (331)
T ss_dssp             EEEEEEETTSCEEE-EETTTEEEEEE-TTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSSSEE
T ss_pred             ceEEEEeCCCcEEE-EeCCceEEEEe-CCCcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCCCCcc
Confidence            35678899987655 56699999999 33332   2222 112234567899999984    4444444421        


Q ss_pred             CcEEEEECCCC-------c-EEEEEec----CCceeEEEeccCCCEEEEcccccC
Q 021399          213 KSAKLWDARTL-------E-LIKTYVT----ERPVNAVTMSPLLDHVVLGGGQDA  255 (313)
Q Consensus       213 g~i~iwd~~~~-------~-~~~~~~~----~~~~~~~~~~p~~~~~~~~~~~~~  255 (313)
                      ..|.=|.....       + .+..+..    .+....++|.|++ .++++.|+..
T Consensus        82 ~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG-~LYvs~G~~~  135 (331)
T PF07995_consen   82 NRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDG-KLYVSVGDGG  135 (331)
T ss_dssp             EEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTS-EEEEEEB-TT
T ss_pred             eeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCC-cEEEEeCCCC
Confidence            12332333222       1 1112222    2346779999998 6666655443

The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....

>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family

Probab=92.59  E-value=11  Score=36.64  Aligned_cols=71  Identities=18%  Similarity=0.253  Sum_probs=48.5

Q ss_pred             CCEEEEeeCCCCeEEEeCCCCcEEEEecCCCCceE-------------EEEECC--CCCeEEEeeC----------CCcE
Q 021399           22 GDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVW-------------CCDVSR--DSMTLITGSA----------DQTA   76 (313)
Q Consensus        22 g~~l~s~s~d~~i~iw~~~~~~~~~~~~~H~~~V~-------------~~~~~~--~~~~l~s~s~----------D~~v   76 (313)
                      +.+++.++.|+.+.-.|.++|+.+..|.. .+.|.             ...-.|  .+..++.|+.          +|.|
T Consensus       260 ~~rV~~~T~Dg~LiALDA~TGk~~W~fg~-~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I  338 (764)
T TIGR03074       260 ARRIILPTSDARLIALDADTGKLCEDFGN-NGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVI  338 (764)
T ss_pred             CCEEEEecCCCeEEEEECCCCCEEEEecC-CCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEE
Confidence            45788888999999999999999877642 22221             111112  1335555543          6889


Q ss_pred             EEEECCCCeEEEEecCC
Q 021399           77 KLWNVETGAQLFTFNFD   93 (313)
Q Consensus        77 ~vWd~~~~~~~~~~~~~   93 (313)
                      +-+|.++++.++.+...
T Consensus       339 ~A~Da~TGkl~W~~~~g  355 (764)
T TIGR03074       339 RAFDVNTGALVWAWDPG  355 (764)
T ss_pred             EEEECCCCcEeeEEecC
Confidence            99999999999887643

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.

>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat

Probab=92.45  E-value=1  Score=25.03  Aligned_cols=39  Identities=18%  Similarity=0.170  Sum_probs=26.5

Q ss_pred             CCCCEEEEee-CCCcEEEEECCCCcEEEEEecCCceeEEE
Q 021399          201 ADGSHFLTGS-LDKSAKLWDARTLELIKTYVTERPVNAVT  239 (313)
Q Consensus       201 ~~~~~l~s~s-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~  239 (313)
                      |++++|+.+. .+++|.++|..+++.+..+........++
T Consensus         1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~vg~~P~~i~   40 (42)
T TIGR02276         1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIPVGGYPFGVA   40 (42)
T ss_pred             CCCCEEEEEeCCCCEEEEEECCCCeEEEEEECCCCCceEE
Confidence            4667665554 57899999999988887776543333333

This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).

>PF15390 DUF4613: Domain of unknown function (DUF4613)

Probab=92.44  E-value=8.7  Score=35.31  Aligned_cols=116  Identities=11%  Similarity=0.088  Sum_probs=68.2

Q ss_pred             CceEEEEEccCC----CEEEEeeCCCeEEEEECC-----CCceeeecccccCceec--eEEEEECCCCCEEEEeeCCCcE
Q 021399          147 GRINRAVWGPLN----RTIISAGEDAIVRIWDTE-----TGKLLKESDKETGHKKT--ITSLAKAADGSHFLTGSLDKSA  215 (313)
Q Consensus       147 ~~i~~~~~~~~~----~~i~t~~~d~~i~lwd~~-----~~~~~~~~~~~~~h~~~--v~~~~~s~~~~~l~s~s~dg~i  215 (313)
                      ..+..+.|.|.+    ..++.......|.+|-+.     .++.+.......+....  ...+.|+|....|+.-.....=
T Consensus        57 EhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dvS  136 (671)
T PF15390_consen   57 EHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDVS  136 (671)
T ss_pred             ceeeeeeecCcccCCCCceEEEeccceEEEEEeccCccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCcee
Confidence            467888898763    345556667889999754     22222211111111111  2235588888776655544433


Q ss_pred             EEEECCC--CcEEEEEecCCceeEEEeccCCCEEEEcccccCceeEeecc
Q 021399          216 KLWDART--LELIKTYVTERPVNAVTMSPLLDHVVLGGGQDASAVTTTDH  263 (313)
Q Consensus       216 ~iwd~~~--~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~  263 (313)
                      .+.+++.  ......+...+.|.|.+|.++|+.++++.|+. ..-|+||.
T Consensus       137 V~~sV~~d~srVkaDi~~~G~IhCACWT~DG~RLVVAvGSs-LHSyiWd~  185 (671)
T PF15390_consen  137 VLPSVHCDSSRVKADIKTSGLIHCACWTKDGQRLVVAVGSS-LHSYIWDS  185 (671)
T ss_pred             EeeeeeeCCceEEEeccCCceEEEEEecCcCCEEEEEeCCe-EEEEEecC
Confidence            4555543  23334455677899999999999999987763 23344443

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=92.39  E-value=5.3  Score=32.76  Aligned_cols=119  Identities=10%  Similarity=0.161  Sum_probs=70.9

Q ss_pred             ecCCCCceEEEEEccCCC-EEEEeeCCCeEEEEECCCCceeeecccccCceeceEEEEECCCCCEEEEeeCCCcEEEEEC
Q 021399          142 LKGPQGRINRAVWGPLNR-TIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDA  220 (313)
Q Consensus       142 ~~~~~~~i~~~~~~~~~~-~i~t~~~d~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~dg~i~iwd~  220 (313)
                      +.+-...+..+.|.|+.+ .+++..+.+.|...+. +++.++++.. .+ -+..-.+++..++.++++--.++.+.++++
T Consensus        17 l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~-~G~vlr~i~l-~g-~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~   93 (248)
T PF06977_consen   17 LPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSL-DGKVLRRIPL-DG-FGDYEGITYLGNGRYVLSEERDQRLYIFTI   93 (248)
T ss_dssp             -TT--S-EEEEEEETTTTEEEEEETTTTEEEEEET-T--EEEEEE--SS--SSEEEEEE-STTEEEEEETTTTEEEEEEE
T ss_pred             CCCccCCccccEEcCCCCeEEEEECCCCEEEEEcC-CCCEEEEEeC-CC-CCCceeEEEECCCEEEEEEcCCCcEEEEEE
Confidence            344455688999999755 5666777888888886 4777776542 22 457788888888877776666899999987


Q ss_pred             CCC--c----EEEEEe------cCCceeEEEeccCCCEEEEcccccCceeEeecc
Q 021399          221 RTL--E----LIKTYV------TERPVNAVTMSPLLDHVVLGGGQDASAVTTTDH  263 (313)
Q Consensus       221 ~~~--~----~~~~~~------~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~  263 (313)
                      ...  .    ....+.      .......++|.|..+.++++--.+-..++..+.
T Consensus        94 ~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~  148 (248)
T PF06977_consen   94 DDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNG  148 (248)
T ss_dssp             ----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEES
T ss_pred             eccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEcc
Confidence            331  1    112222      123478899999999888874333333444443

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=92.23  E-value=8.1  Score=34.46  Aligned_cols=59  Identities=15%  Similarity=0.227  Sum_probs=42.2

Q ss_pred             CCceEEEEECCCCCeEEEeeCCCcEEEEECCCCeEEEEecCC--CCeeEEEeecCCeEEEE
Q 021399           52 NGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFNFD--SPARSVDFAVGDKLAVI  110 (313)
Q Consensus        52 ~~~V~~~~~~~~~~~l~s~s~D~~v~vWd~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~  110 (313)
                      .+++..+++||+++.++--..+|.+.+.+.+-.+....+...  ..+..+.|+-.+.+++.
T Consensus       216 ~~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~~~~~e~~~~~~~~p~~~~WCG~dav~l~  276 (410)
T PF04841_consen  216 DGPIIKIAVSPNGKFIALFTDSGNLWVVSSDFSEKLCEFDTDSKSPPKQMAWCGNDAVVLS  276 (410)
T ss_pred             CCCeEEEEECCCCCEEEEEECCCCEEEEECcccceeEEeecCcCCCCcEEEEECCCcEEEE
Confidence            367999999999999988888999988876555554444433  45566777766555444

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=92.13  E-value=6.2  Score=32.92  Aligned_cols=190  Identities=13%  Similarity=0.166  Sum_probs=101.0

Q ss_pred             cCCCCceEEEEECCCCCeEEEeeCCCcEEEEECCCCeEEEEecCC--CCeeEEEeecCCeEEEEECCC----ceeccccc
Q 021399           49 RGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFNFD--SPARSVDFAVGDKLAVITTDP----FMELNSAI  122 (313)
Q Consensus        49 ~~H~~~V~~~~~~~~~~~l~s~s~D~~v~vWd~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~  122 (313)
                      .+-...|.++.|+|+.+.|++......-.||=..+|+.+.++...  ...-.+.+..++++++.....    .+.+....
T Consensus        82 ~g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~~t  161 (316)
T COG3204          82 LGETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQFVIVDERDRALYLFTVDADT  161 (316)
T ss_pred             ccccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEecCCEEEEEehhcceEEEEEEcCCc
Confidence            444455999999999988888777778888877888888776532  233344455555555443211    00111110


Q ss_pred             eeeeeeeCCCCCCCceEEEec--CC-CCceEEEEEccCCCEEEEeeCCCeEEEEECCCCc-eeeecccccCc-------e
Q 021399          123 HVKRIARDPADQGGESVLILK--GP-QGRINRAVWGPLNRTIISAGEDAIVRIWDTETGK-LLKESDKETGH-------K  191 (313)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~~~--~~-~~~i~~~~~~~~~~~i~t~~~d~~i~lwd~~~~~-~~~~~~~~~~h-------~  191 (313)
                      .....        ......+.  .+ +...-.++|.|.+..+..+-+-.-+.|+..+... .+. ......+       -
T Consensus       162 ~~~~~--------~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~-~~~~~~~~~~~~~f~  232 (316)
T COG3204         162 TVISA--------KVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLS-VHASLDPTADRDLFV  232 (316)
T ss_pred             cEEec--------cceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcccc-cccccCcccccceEe
Confidence            00000        00011111  11 2234578899999999999888878888765332 111 1001111       2


Q ss_pred             eceEEEEECCCCCE-EEEeeCCCcEEEEECCCCcEEEEEec----------CCceeEEEeccCCCEEE
Q 021399          192 KTITSLAKAADGSH-FLTGSLDKSAKLWDARTLELIKTYVT----------ERPVNAVTMSPLLDHVV  248 (313)
Q Consensus       192 ~~v~~~~~s~~~~~-l~s~s~dg~i~iwd~~~~~~~~~~~~----------~~~~~~~~~~p~~~~~~  248 (313)
                      ..+.++.|.+..+. ++-+-.++.+.-.|.+ ++++..+..          -.....+++.+.+...+
T Consensus       233 ~DvSgl~~~~~~~~LLVLS~ESr~l~Evd~~-G~~~~~lsL~~g~~gL~~dipqaEGiamDd~g~lYI  299 (316)
T COG3204         233 LDVSGLEFNAITNSLLVLSDESRRLLEVDLS-GEVIELLSLTKGNHGLSSDIPQAEGIAMDDDGNLYI  299 (316)
T ss_pred             eccccceecCCCCcEEEEecCCceEEEEecC-CCeeeeEEeccCCCCCcccCCCcceeEECCCCCEEE
Confidence            34666777765444 4455556666666654 444433321          11345566666554433

>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain

Probab=92.08  E-value=6.3  Score=34.52  Aligned_cols=96  Identities=17%  Similarity=0.143  Sum_probs=48.1

Q ss_pred             EEEEEccCCCEEEEee-----------CCC-eEEEEECCC--Cceee-ecccccCceeceEEEEECCCCCEEEEeeCCCc
Q 021399          150 NRAVWGPLNRTIISAG-----------EDA-IVRIWDTET--GKLLK-ESDKETGHKKTITSLAKAADGSHFLTGSLDKS  214 (313)
Q Consensus       150 ~~~~~~~~~~~i~t~~-----------~d~-~i~lwd~~~--~~~~~-~~~~~~~h~~~v~~~~~s~~~~~l~s~s~dg~  214 (313)
                      ..++|.++|+.+++-.           ..+ .|.+++-.+  ++.-+ ++. .. .-...+.+++.++| .+++ ....-
T Consensus        17 ~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vf-a~-~l~~p~Gi~~~~~G-lyV~-~~~~i   92 (367)
T TIGR02604        17 IAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVF-AE-ELSMVTGLAVAVGG-VYVA-TPPDI   92 (367)
T ss_pred             ceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEe-ec-CCCCccceeEecCC-EEEe-CCCeE
Confidence            4567788888666542           223 677776432  32211 111 11 12345788888888 4444 44433


Q ss_pred             EEEEECCC-------CcEEEE-Eec-----CCceeEEEeccCCCEEEE
Q 021399          215 AKLWDART-------LELIKT-YVT-----ERPVNAVTMSPLLDHVVL  249 (313)
Q Consensus       215 i~iwd~~~-------~~~~~~-~~~-----~~~~~~~~~~p~~~~~~~  249 (313)
                      .++.|...       .+.+.+ +..     ....+.++|.|++...+.
T Consensus        93 ~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~  140 (367)
T TIGR02604        93 LFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFN  140 (367)
T ss_pred             EEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEe
Confidence            33434421       112222 211     234678999998764443

All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.

>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]

Probab=91.85  E-value=0.21  Score=47.37  Aligned_cols=137  Identities=16%  Similarity=0.126  Sum_probs=68.4

Q ss_pred             cCCCEEEEeeCCCeEEEEECCCCceeeecccccCceeceEEEE-----------ECCCCCEEEEeeCCCcEEEEECC---
Q 021399          156 PLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLA-----------KAADGSHFLTGSLDKSAKLWDAR---  221 (313)
Q Consensus       156 ~~~~~i~t~~~d~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~-----------~s~~~~~l~s~s~dg~i~iwd~~---  221 (313)
                      +..-++..+-.++.|++........ ..+   .+|...+..++           .||||..++.++.||.++.|.+-   
T Consensus       193 ~~~~~ic~~~~~~~i~lL~~~ra~~-~l~---rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Qiyi~g  268 (1283)
T KOG1916|consen  193 VNKVYICYGLKGGEIRLLNINRALR-SLF---RSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGSVGFYQIYITG  268 (1283)
T ss_pred             cccceeeeccCCCceeEeeechHHH-HHH---HhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCccceeeeeeec
Confidence            4445566666777777654332110 111   23555544433           68999999999999999888543   


Q ss_pred             --CCcEEEEEecCCceeEEEeccCCC-EEEEcccccCceeEeeccCCCceeeeeeehhhhhhhccccccccceeEEEECC
Q 021399          222 --TLELIKTYVTERPVNAVTMSPLLD-HVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNP  298 (313)
Q Consensus       222 --~~~~~~~~~~~~~~~~~~~~p~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~fsp  298 (313)
                        ...|+.....+..-..+||..+.+ ...+.-+..-..+...|   ..-++++|.....+++-.+  -...|..++ -+
T Consensus       269 ~~~~rclhewkphd~~p~vC~lc~~~~~~~v~i~~w~~~Itttd---~nre~k~w~~a~w~Cll~~--~~d~v~iV~-p~  342 (1283)
T KOG1916|consen  269 KIVHRCLHEWKPHDKHPRVCWLCHKQEILVVSIGKWVLRITTTD---VNREEKFWAEAPWQCLLDK--LIDGVQIVG-PH  342 (1283)
T ss_pred             cccHhhhhccCCCCCCCceeeeeccccccCCccceeEEEEeccc---CCcceeEeeccchhhhhhh--cccceEeec-CC
Confidence              223444443221111223322111 11122121111122222   2336788987777665222  244566666 66


Q ss_pred             CCCe
Q 021399          299 DGKR  302 (313)
Q Consensus       299 dgk~  302 (313)
                      ||+.
T Consensus       343 ~~~v  346 (1283)
T KOG1916|consen  343 DGEV  346 (1283)
T ss_pred             Cccc
Confidence            6665

>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]

Probab=91.74  E-value=2.2  Score=38.31  Aligned_cols=123  Identities=20%  Similarity=0.257  Sum_probs=72.1

Q ss_pred             EEeeCCCeEEEEECCCCceeeecccccCceeceEEEEECCCCCE-------EEEeeCCCcEEEEECCCCcE--EEEEec-
Q 021399          162 ISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSH-------FLTGSLDKSAKLWDARTLEL--IKTYVT-  231 (313)
Q Consensus       162 ~t~~~d~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~-------l~s~s~dg~i~iwd~~~~~~--~~~~~~-  231 (313)
                      .++.....|+-.|++.|+.+.+-..    ...|+-+.+.|+.+.       -+.|-.|+.|.=||+|-...  +..-.. 
T Consensus       350 ~~~~~~~~l~klDIE~GKIVeEWk~----~~di~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~q~k  425 (644)
T KOG2395|consen  350 MDGGEQDKLYKLDIERGKIVEEWKF----EDDINMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVVQSK  425 (644)
T ss_pred             eCCCCcCcceeeecccceeeeEeec----cCCcceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeeeecc
Confidence            4455666788889999887766432    233777777776553       34566788898999884322  111111 


Q ss_pred             ----CCceeEEEeccCCCEEEEcccccCceeEeeccCCCceeeeeeehhhhhhhccccccccceeEEEECCCCCee
Q 021399          232 ----ERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKRY  303 (313)
Q Consensus       232 ----~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~fspdgk~~  303 (313)
                          ...-.|.+-..+ .++++++ .             ...+|+||..-.+...-+.+-..+|..|..+.|||.+
T Consensus       426 qy~~k~nFsc~aTT~s-G~IvvgS-~-------------~GdIRLYdri~~~AKTAlPgLG~~I~hVdvtadGKwi  486 (644)
T KOG2395|consen  426 QYSTKNNFSCFATTES-GYIVVGS-L-------------KGDIRLYDRIGRRAKTALPGLGDAIKHVDVTADGKWI  486 (644)
T ss_pred             ccccccccceeeecCC-ceEEEee-c-------------CCcEEeehhhhhhhhhcccccCCceeeEEeeccCcEE
Confidence                111122222222 2333322 1             1246777764344444567788999999999999983

>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin

Probab=91.43  E-value=2.1  Score=34.45  Aligned_cols=64  Identities=13%  Similarity=0.292  Sum_probs=46.3

Q ss_pred             EccCCCEEEEeeCCCCeEEEeCCCCcEEEE-------ec-------CCCCceEEEEECCCCCeEEEeeCCCcEEEEECC
Q 021399           18 YNKDGDLLFSCAKDHTPTVWFADNGERLGT-------YR-------GHNGAVWCCDVSRDSMTLITGSADQTAKLWNVE   82 (313)
Q Consensus        18 fs~~g~~l~s~s~d~~i~iw~~~~~~~~~~-------~~-------~H~~~V~~~~~~~~~~~l~s~s~D~~v~vWd~~   82 (313)
                      +..++++|+.-..+|.+++||+.+++.+..       +.       .....|..+.++.+|.-+++=+ +|....|+..
T Consensus        18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ls-ng~~y~y~~~   95 (219)
T PF07569_consen   18 LECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLS-NGDSYSYSPD   95 (219)
T ss_pred             EEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEe-CCCEEEeccc
Confidence            456789999999999999999998876422       11       3456677788887777665543 4677777754

These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin

Probab=91.39  E-value=1.9  Score=34.63  Aligned_cols=67  Identities=13%  Similarity=0.216  Sum_probs=47.1

Q ss_pred             EccCCCEEEEeeCCCeEEEEECCCCceeeeccc----cc-------CceeceEEEEECCCCCEEEEeeCCCcEEEEECC
Q 021399          154 WGPLNRTIISAGEDAIVRIWDTETGKLLKESDK----ET-------GHKKTITSLAKAADGSHFLTGSLDKSAKLWDAR  221 (313)
Q Consensus       154 ~~~~~~~i~t~~~d~~i~lwd~~~~~~~~~~~~----~~-------~h~~~v~~~~~s~~~~~l~s~s~dg~i~iwd~~  221 (313)
                      +...+.++++-+.+|.+++||+.+++.+-....    ..       .....|..+..+.+|.-|++-+ +|..+.||..
T Consensus        18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ls-ng~~y~y~~~   95 (219)
T PF07569_consen   18 LECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLS-NGDSYSYSPD   95 (219)
T ss_pred             EEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEe-CCCEEEeccc
Confidence            344567888899999999999998775432200    11       2456788888888887666654 5788888765

These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]

Probab=90.91  E-value=4.3  Score=36.49  Aligned_cols=60  Identities=22%  Similarity=0.270  Sum_probs=43.2

Q ss_pred             CCEEEEeeCCCeEEEEECCCCceeeecccccCceeceEEEEECCCCCEEEEeeCCCcEEEEECC
Q 021399          158 NRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDAR  221 (313)
Q Consensus       158 ~~~i~t~~~d~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~dg~i~iwd~~  221 (313)
                      ..+|+.+++.|.|+|||.-... .++  ..++....|..+..+.+|+++++.+. ..+.+-|++
T Consensus       573 sGyIa~as~kGDirLyDRig~r-AKt--alP~lG~aIk~idvta~Gk~ilaTCk-~yllL~d~~  632 (776)
T COG5167         573 SGYIAAASRKGDIRLYDRIGKR-AKT--ALPGLGDAIKHIDVTANGKHILATCK-NYLLLTDVP  632 (776)
T ss_pred             CceEEEecCCCceeeehhhcch-hhh--cCcccccceeeeEeecCCcEEEEeec-ceEEEEecc
Confidence            4689999999999999953221 111  12356778999999999999887775 456677754

>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins

Probab=90.72  E-value=1.6  Score=24.76  Aligned_cols=30  Identities=7%  Similarity=0.086  Sum_probs=24.4

Q ss_pred             ceEEEEECCCCC---EEEEeeCCCcEEEEECCC
Q 021399          193 TITSLAKAADGS---HFLTGSLDKSAKLWDART  222 (313)
Q Consensus       193 ~v~~~~~s~~~~---~l~s~s~dg~i~iwd~~~  222 (313)
                      .++++.|+|+..   .|+-+=.-|.|.++|+++
T Consensus         2 AvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~   34 (43)
T PF10313_consen    2 AVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS   34 (43)
T ss_pred             CeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence            588999997544   777777788999999995

It contains a characteristic DLL sequence motif.

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=90.54  E-value=13  Score=35.80  Aligned_cols=33  Identities=18%  Similarity=0.453  Sum_probs=27.1

Q ss_pred             CCceEEEEEccC---CCEEEEeeCCCeEEEEECCCC
Q 021399          146 QGRINRAVWGPL---NRTIISAGEDAIVRIWDTETG  178 (313)
Q Consensus       146 ~~~i~~~~~~~~---~~~i~t~~~d~~i~lwd~~~~  178 (313)
                      ...|..+.|+|.   +..++.-..|+++|+||+...
T Consensus       146 ~~~i~qv~WhP~s~~~~~l~vLtsdn~lR~y~~~~~  181 (717)
T PF10168_consen  146 SLEIKQVRWHPWSESDSHLVVLTSDNTLRLYDISDP  181 (717)
T ss_pred             CceEEEEEEcCCCCCCCeEEEEecCCEEEEEecCCC
Confidence            346788899987   478899999999999998653

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates

Probab=90.51  E-value=1.5  Score=40.67  Aligned_cols=72  Identities=25%  Similarity=0.268  Sum_probs=43.0

Q ss_pred             cCCCEEEEeeCCCCeEEEeCCC----CcEEEEe-----------cC-----------CCCceEEEEECC----CCCeEEE
Q 021399           20 KDGDLLFSCAKDHTPTVWFADN----GERLGTY-----------RG-----------HNGAVWCCDVSR----DSMTLIT   69 (313)
Q Consensus        20 ~~g~~l~s~s~d~~i~iw~~~~----~~~~~~~-----------~~-----------H~~~V~~~~~~~----~~~~l~s   69 (313)
                      ++...++.+..||.+.......    +......           .+           -.+.+.+++++.    +..++++
T Consensus       156 ~~~~~l~v~~~dG~ll~l~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t  235 (547)
T PF11715_consen  156 DSEANLVVSLQDGGLLRLKRSSGDSDGSVWSEELFNDSSWLRSLSGLFPWSYRGDNSSSSVAASLAVSSSEINDDTFLFT  235 (547)
T ss_dssp             -SSSBEEEEESSS-EEEEEES----SSS-EE----STHHHHHCCTTTS-TT---SSSS---EEEEEE-----ETTTEEEE
T ss_pred             cCCCEEEEEECCCCeEEEECCcccCCCCeeEEEEeCCCchhhhhhCcCCcccccCCCCCCccceEEEecceeCCCCEEEE
Confidence            3666777777888877665543    2221111           10           012345566665    5678999


Q ss_pred             eeCCCcEEEEECCCCeEEEEec
Q 021399           70 GSADQTAKLWNVETGAQLFTFN   91 (313)
Q Consensus        70 ~s~D~~v~vWd~~~~~~~~~~~   91 (313)
                      -+.|+++|+||+.+++++....
T Consensus       236 l~~D~~LRiW~l~t~~~~~~~~  257 (547)
T PF11715_consen  236 LSRDHTLRIWSLETGQCLATID  257 (547)
T ss_dssp             EETTSEEEEEETTTTCEEEEEE
T ss_pred             EeCCCeEEEEECCCCeEEEEec
Confidence            9999999999999999866553

The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.

>KOG2377 consensus Uncharacterized conserved protein [Function unknown]

Probab=89.01  E-value=14  Score=32.94  Aligned_cols=139  Identities=13%  Similarity=0.152  Sum_probs=78.1

Q ss_pred             eEEEEccCCCEEEEeeCCCCeEEEeCCC---CcEEEEecCCCCceEEEEECCCCCeEEEeeCCCcEEEEECCCCeEEEEe
Q 021399           14 TYLKYNKDGDLLFSCAKDHTPTVWFADN---GERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTF   90 (313)
Q Consensus        14 ~~~~fs~~g~~l~s~s~d~~i~iw~~~~---~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~v~vWd~~~~~~~~~~   90 (313)
                      +.+-|+..++.|++.-. |-+.=|.++.   ..++..-..-+++|.++.|++|++.++.--.|.+|.+.+....+.....
T Consensus        26 ngvFfDDaNkqlfavrS-ggatgvvvkgpndDVpiSfdm~d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~  104 (657)
T KOG2377|consen   26 NGVFFDDANKQLFAVRS-GGATGVVVKGPNDDVPISFDMDDKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEY  104 (657)
T ss_pred             cceeeccCcceEEEEec-CCeeEEEEeCCCCCCCceeeecCCCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHH
Confidence            45777766666665443 3334454332   2233333456789999999999999999999999999987433322211


Q ss_pred             c----C-CCCeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEccCCCEEEEee
Q 021399           91 N----F-DSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAG  165 (313)
Q Consensus        91 ~----~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~t~~  165 (313)
                      .    . ...+..+-|.....++.+...+       +.+...  .   .....+...+.+.-.|+...|.++.+.++-++
T Consensus       105 ~~~ck~k~~~IlGF~W~~s~e~A~i~~~G-------~e~y~v--~---pekrslRlVks~~~nvnWy~yc~et~v~LL~t  172 (657)
T KOG2377|consen  105 TQECKTKNANILGFCWTSSTEIAFITDQG-------IEFYQV--L---PEKRSLRLVKSHNLNVNWYMYCPETAVILLST  172 (657)
T ss_pred             HHHhccCcceeEEEEEecCeeEEEEecCC-------eEEEEE--c---hhhhhhhhhhhcccCccEEEEccccceEeeec
Confidence            1    1 1224444455544444443322       111111  1   11223334456677788888888877655443

>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus

Probab=88.98  E-value=5.1  Score=35.54  Aligned_cols=99  Identities=11%  Similarity=0.016  Sum_probs=61.3

Q ss_pred             eceEEEEECCCCCEEEEeeCCCcEEEEECCCCcEEEEEecCCc--eeEEEeccCCCE-E-----EEcccccCceeEeecc
Q 021399          192 KTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTERP--VNAVTMSPLLDH-V-----VLGGGQDASAVTTTDH  263 (313)
Q Consensus       192 ~~v~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~--~~~~~~~p~~~~-~-----~~~~~~~~~~~~~~~~  263 (313)
                      -.+.+++.+|++.+.|+...=|.|.++|+.++..++.++.-+.  +.++......+. .     .-........+.++-.
T Consensus       308 R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~~~l~LvIyap  387 (415)
T PF14655_consen  308 REGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSSSRFALFLVIYAP  387 (415)
T ss_pred             ceEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhccCccceEEEEEeecccccccccccccCCCCcceEEEEEEec
Confidence            4578889999999888887789999999999999988875433  333333222211 0     0000111234556666


Q ss_pred             CCCceeeeeeehhhhhhhccccccccceeEEEECCCCCe
Q 021399          264 RAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKR  302 (313)
Q Consensus       264 ~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~fspdgk~  302 (313)
                      |.+..|  +|...          |...|.+....+++|.
T Consensus       388 rRg~lE--vW~~~----------~g~Rv~a~~v~k~~rL  414 (415)
T PF14655_consen  388 RRGILE--VWSMR----------QGPRVAAFNVGKGCRL  414 (415)
T ss_pred             cCCeEE--EEecC----------CCCEEEEEEeCCCcEE
Confidence            666655  46543          3456777777666664

>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2

Probab=88.49  E-value=13  Score=30.73  Aligned_cols=189  Identities=16%  Similarity=0.171  Sum_probs=100.3

Q ss_pred             CceEEEEECCCCCeEEEeeCCC--cEEEEECCCCeEEEEecCCCCeeEEEeecCCeEEEEECCCceeccccceeeeeeeC
Q 021399           53 GAVWCCDVSRDSMTLITGSADQ--TAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARD  130 (313)
Q Consensus        53 ~~V~~~~~~~~~~~l~s~s~D~--~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  130 (313)
                      .....+.|..+|.++-|.|.-|  .|+.+|+.+++.......+...          +                       
T Consensus        45 aFTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~----------F-----------------------   91 (264)
T PF05096_consen   45 AFTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRY----------F-----------------------   91 (264)
T ss_dssp             -EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT-----------------------------------
T ss_pred             ccCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccc----------c-----------------------
Confidence            4456788877888888888765  7999999998766543322110          0                       


Q ss_pred             CCCCCCceEEEecCCCCceEEEEEccCCCEEEEeeCCCeEEEEECCCCceeeecccccCceeceEEEEECCCCCEEEEee
Q 021399          131 PADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGS  210 (313)
Q Consensus       131 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~t~~~d~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s  210 (313)
                           ++-+..+   ...           .+.-.-.++...+||..+-+.+.++..    ...=+.++  .|++.|+...
T Consensus        92 -----gEGit~~---~d~-----------l~qLTWk~~~~f~yd~~tl~~~~~~~y----~~EGWGLt--~dg~~Li~SD  146 (264)
T PF05096_consen   92 -----GEGITIL---GDK-----------LYQLTWKEGTGFVYDPNTLKKIGTFPY----PGEGWGLT--SDGKRLIMSD  146 (264)
T ss_dssp             -----EEEEEEE---TTE-----------EEEEESSSSEEEEEETTTTEEEEEEE-----SSS--EEE--ECSSCEEEE-
T ss_pred             -----ceeEEEE---CCE-----------EEEEEecCCeEEEEccccceEEEEEec----CCcceEEE--cCCCEEEEEC
Confidence                 0001111   112           233345678889999998887777643    23445555  4556666665


Q ss_pred             CCCcEEEEECCCCcEEEEEec---CC---ceeEEEeccCCCEEEEcccccCceeEeeccCCCceeeeeeehhhhhh-hcc
Q 021399          211 LDKSAKLWDARTLELIKTYVT---ER---PVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEE-IGG  283 (313)
Q Consensus       211 ~dg~i~iwd~~~~~~~~~~~~---~~---~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~  283 (313)
                      -..+++++|.++.+..+.+..   ..   .+|.+++-  ...+++-.-.. ..+..-|..+|...- .+|...-.. ...
T Consensus       147 GS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i--~G~IyANVW~t-d~I~~Idp~tG~V~~-~iDls~L~~~~~~  222 (264)
T PF05096_consen  147 GSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYI--NGKIYANVWQT-DRIVRIDPETGKVVG-WIDLSGLRPEVGR  222 (264)
T ss_dssp             SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEE--TTEEEEEETTS-SEEEEEETTT-BEEE-EEE-HHHHHHHTS
T ss_pred             CccceEEECCcccceEEEEEEEECCEECCCcEeEEEE--cCEEEEEeCCC-CeEEEEeCCCCeEEE-EEEhhHhhhcccc
Confidence            567899999999888777642   12   35667765  23444432221 223333444444332 223321111 110


Q ss_pred             c---cccccceeEEEECCCCCee
Q 021399          284 V---KGHFGPINALAFNPDGKRY  303 (313)
Q Consensus       284 ~---~~h~~~V~~~~fspdgk~~  303 (313)
                      -   ..-....+.||++|+.++|
T Consensus       223 ~~~~~~~~dVLNGIAyd~~~~~l  245 (264)
T PF05096_consen  223 DKSRQPDDDVLNGIAYDPETDRL  245 (264)
T ss_dssp             TTST--TTS-EEEEEEETTTTEE
T ss_pred             cccccccCCeeEeEeEeCCCCEE
Confidence            0   1114567999999998764

3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.

>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=88.32  E-value=9.2  Score=31.95  Aligned_cols=104  Identities=10%  Similarity=0.186  Sum_probs=72.3

Q ss_pred             CCceEEEEEccCCCEEEEeeCCCeEEEEECCCCceeeecccccCceeceEEEEECCCCCEEEEeeCCCcEEEEECCCCcE
Q 021399          146 QGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLEL  225 (313)
Q Consensus       146 ~~~i~~~~~~~~~~~i~t~~~d~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~  225 (313)
                      .+.+..+.|+|+.+.+++..+...--+|=...|+.++++... + -...-.+.+..+|.+.++-=.++++.++.++...-
T Consensus        85 ~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~-g-~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~~t~  162 (316)
T COG3204          85 TANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLT-G-FSDPETIEYIGGNQFVIVDERDRALYLFTVDADTT  162 (316)
T ss_pred             cccccceeeCCCcceEEEecCCCceEEEEecCCceEEEeccc-c-cCChhHeEEecCCEEEEEehhcceEEEEEEcCCcc
Confidence            345788999999999998888887777777788888876432 2 23455677888888877777888888887665421


Q ss_pred             EE-----EEe-----c-CCceeEEEeccCCCEEEEcc
Q 021399          226 IK-----TYV-----T-ERPVNAVTMSPLLDHVVLGG  251 (313)
Q Consensus       226 ~~-----~~~-----~-~~~~~~~~~~p~~~~~~~~~  251 (313)
                      +.     ++.     . ..--..++|.|....++++-
T Consensus       163 ~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aK  199 (316)
T COG3204         163 VISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAK  199 (316)
T ss_pred             EEeccceEEeccccCCCCcCceeeecCCCCceEEEEE
Confidence            11     111     1 22345799999888877763

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=87.69  E-value=20  Score=34.49  Aligned_cols=76  Identities=13%  Similarity=0.155  Sum_probs=51.9

Q ss_pred             CCceEEEEEccCCCEEEEeeCCCeEEEEECC----------CCc--eeee-c-----ccccCceeceEEEEECCC---CC
Q 021399          146 QGRINRAVWGPLNRTIISAGEDAIVRIWDTE----------TGK--LLKE-S-----DKETGHKKTITSLAKAAD---GS  204 (313)
Q Consensus       146 ~~~i~~~~~~~~~~~i~t~~~d~~i~lwd~~----------~~~--~~~~-~-----~~~~~h~~~v~~~~~s~~---~~  204 (313)
                      ...|..+.++|+|..++..|..+. .|-.+.          .++  ..++ .     .........|..+.|+|.   +.
T Consensus        84 ~f~v~~i~~n~~g~~lal~G~~~v-~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~  162 (717)
T PF10168_consen   84 LFEVHQISLNPTGSLLALVGPRGV-VVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDS  162 (717)
T ss_pred             ceeEEEEEECCCCCEEEEEcCCcE-EEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCC
Confidence            456888999999999988887664 333321          111  1111 1     111234567889999986   58


Q ss_pred             EEEEeeCCCcEEEEECCC
Q 021399          205 HFLTGSLDKSAKLWDART  222 (313)
Q Consensus       205 ~l~s~s~dg~i~iwd~~~  222 (313)
                      +|+.=..|+++|+||+..
T Consensus       163 ~l~vLtsdn~lR~y~~~~  180 (717)
T PF10168_consen  163 HLVVLTSDNTLRLYDISD  180 (717)
T ss_pred             eEEEEecCCEEEEEecCC
Confidence            899999999999999875

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1

Probab=87.69  E-value=17  Score=31.23  Aligned_cols=243  Identities=12%  Similarity=0.129  Sum_probs=115.1

Q ss_pred             EEEEccCCCEEEEee----------CCCCeEEEeCCCCcEEEEec--C-CCCce----EEEEECCCCCeEEEe--eCCCc
Q 021399           15 YLKYNKDGDLLFSCA----------KDHTPTVWFADNGERLGTYR--G-HNGAV----WCCDVSRDSMTLITG--SADQT   75 (313)
Q Consensus        15 ~~~fs~~g~~l~s~s----------~d~~i~iw~~~~~~~~~~~~--~-H~~~V----~~~~~~~~~~~l~s~--s~D~~   75 (313)
                      .+..|||++.+++++          -...|.+||.++-.....+.  . |+..+    ...+++.|+++++..  +--..
T Consensus        40 ~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~~~~~~~~~~ls~dgk~~~V~N~TPa~S  119 (342)
T PF06433_consen   40 NVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQVVPYKNMFALSADGKFLYVQNFTPATS  119 (342)
T ss_dssp             EEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B--BS--GGGEEE-TTSSEEEEEEESSSEE
T ss_pred             ceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchheecccccceEEccCCcEEEEEccCCCCe
Confidence            356799999999854          23458899999987766543  2 22221    234667777755442  34455


Q ss_pred             EEEEECCCCeEEEEecCCCCeeEEEe-ecCCeEEEEECCCceeccccceeeeeeeCCCCCCC-ceEEEecCCCCce-EEE
Q 021399           76 AKLWNVETGAQLFTFNFDSPARSVDF-AVGDKLAVITTDPFMELNSAIHVKRIARDPADQGG-ESVLILKGPQGRI-NRA  152 (313)
Q Consensus        76 v~vWd~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~i-~~~  152 (313)
                      |-|-|+..++.+..+..  |.+...+ ...+.+.....++.+.        .+..+...... .....+.....++ ..-
T Consensus       120 VtVVDl~~~kvv~ei~~--PGC~~iyP~~~~~F~~lC~DGsl~--------~v~Ld~~Gk~~~~~t~~F~~~~dp~f~~~  189 (342)
T PF06433_consen  120 VTVVDLAAKKVVGEIDT--PGCWLIYPSGNRGFSMLCGDGSLL--------TVTLDADGKEAQKSTKVFDPDDDPLFEHP  189 (342)
T ss_dssp             EEEEETTTTEEEEEEEG--TSEEEEEEEETTEEEEEETTSCEE--------EEEETSTSSEEEEEEEESSTTTS-B-S--
T ss_pred             EEEEECCCCceeeeecC--CCEEEEEecCCCceEEEecCCceE--------EEEECCCCCEeEeeccccCCCCccccccc
Confidence            66777777766554432  2222222 1223343333333221        11111100000 0001111111111 122


Q ss_pred             EEccCCCEEEEeeCCCeEEEEECCCCce--eeeccccc------Cc-eeceEEEEECCCCCEEEEeeC--------CC--
Q 021399          153 VWGPLNRTIISAGEDAIVRIWDTETGKL--LKESDKET------GH-KKTITSLAKAADGSHFLTGSL--------DK--  213 (313)
Q Consensus       153 ~~~~~~~~i~t~~~d~~i~lwd~~~~~~--~~~~~~~~------~h-~~~v~~~~~s~~~~~l~s~s~--------dg--  213 (313)
                      ++...+..++--+.+|.|+--|+.....  ........      +- .+.---+++++..+.|..--.        |+  
T Consensus       190 ~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgt  269 (342)
T PF06433_consen  190 AYSRDGGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGT  269 (342)
T ss_dssp             EEETTTTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE--TT-TTS-EE
T ss_pred             ceECCCCeEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccccCeEEEEecCCCCCCccCCce
Confidence            3333344455567777777777654331  11111000      00 111223566666655554321        22  


Q ss_pred             cEEEEECCCCcEEEEEecCCceeEEEeccCCCEEEEcccccCceeEeeccCCCc
Q 021399          214 SAKLWDARTLELIKTYVTERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGK  267 (313)
Q Consensus       214 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~  267 (313)
                      .|-++|+++++.+..+..+.++.+++.+-+..=++.+.......+.++|..+++
T Consensus       270 eVWv~D~~t~krv~Ri~l~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk  323 (342)
T PF06433_consen  270 EVWVYDLKTHKRVARIPLEHPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGK  323 (342)
T ss_dssp             EEEEEETTTTEEEEEEEEEEEESEEEEESSSS-EEEEEETTTTEEEEEETTT--
T ss_pred             EEEEEECCCCeEEEEEeCCCccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCc
Confidence            355669999999999987778889998877664443322223345555555543

4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....

>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase

Probab=87.30  E-value=16  Score=30.34  Aligned_cols=206  Identities=16%  Similarity=0.128  Sum_probs=103.0

Q ss_pred             ceeEEEEccCCCEEEEeeCCCCeEEEeCCCCcEEEEe--------------cCCCCceEEEE--ECCCCCeEEEeeCCCc
Q 021399           12 PLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTY--------------RGHNGAVWCCD--VSRDSMTLITGSADQT   75 (313)
Q Consensus        12 ~v~~~~fs~~g~~l~s~s~d~~i~iw~~~~~~~~~~~--------------~~H~~~V~~~~--~~~~~~~l~s~s~D~~   75 (313)
                      +|..+..-|+-+.|+.-+ |+.+.++++..-.....-              ......+...+  -.+.+...+.....++
T Consensus        37 ~I~ql~vl~~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~  115 (275)
T PF00780_consen   37 SITQLSVLPELNLLLVLS-DGQLYVYDLDSLEPVSTSAPLAFPKSRSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKK  115 (275)
T ss_pred             eEEEEEEecccCEEEEEc-CCccEEEEchhhccccccccccccccccccccccccCCeeEEeeccccccceEEEEEECCE
Confidence            377788888777777554 599999988755433211              11122343333  1233444445556668


Q ss_pred             EEEEECCCC-----eEEEEecCCCCeeEEEeecCCeEEEEECCCceecccc-ceeeeeeeCCCCCCCceEEEecCCCCce
Q 021399           76 AKLWNVETG-----AQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSA-IHVKRIARDPADQGGESVLILKGPQGRI  149 (313)
Q Consensus        76 v~vWd~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i  149 (313)
                      +.+|.....     +....+.....+..+.|. ++.++++..+.+..++.. .....+... .... ...........++
T Consensus       116 i~i~~~~~~~~~f~~~~ke~~lp~~~~~i~~~-~~~i~v~~~~~f~~idl~~~~~~~l~~~-~~~~-~~~~~~~~~~~~~  192 (275)
T PF00780_consen  116 ILIYEWNDPRNSFSKLLKEISLPDPPSSIAFL-GNKICVGTSKGFYLIDLNTGSPSELLDP-SDSS-SSFKSRNSSSKPL  192 (275)
T ss_pred             EEEEEEECCcccccceeEEEEcCCCcEEEEEe-CCEEEEEeCCceEEEecCCCCceEEeCc-cCCc-chhhhcccCCCce
Confidence            888887553     344455566777788777 566666655544333222 111111110 0000 0000000011122


Q ss_pred             EEEEEccCCCEEEEeeCCCeEEEEECCCCceee--ecccccCceeceEEEEECCCCCEEEEeeCCCcEEEEECCCCcEEE
Q 021399          150 NRAVWGPLNRTIISAGEDAIVRIWDTETGKLLK--ESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIK  227 (313)
Q Consensus       150 ~~~~~~~~~~~i~t~~~d~~i~lwd~~~~~~~~--~~~~~~~h~~~v~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~  227 (313)
                      ..... +++++++ +.++ .-...|. .|+..+  .+.    -.....++++.  ..+|+.-+. +.|.+|++.++++++
T Consensus       193 ~~~~~-~~~e~Ll-~~~~-~g~fv~~-~G~~~r~~~i~----W~~~p~~~~~~--~pyli~~~~-~~iEV~~~~~~~lvQ  261 (275)
T PF00780_consen  193 GIFQL-SDNEFLL-CYDN-IGVFVNK-NGEPSRKSTIQ----WSSAPQSVAYS--SPYLIAFSS-NSIEVRSLETGELVQ  261 (275)
T ss_pred             EEEEe-CCceEEE-Eecc-eEEEEcC-CCCcCcccEEE----cCCchhEEEEE--CCEEEEECC-CEEEEEECcCCcEEE
Confidence            22222 2334444 3322 2222333 343332  122    22355666664  356766655 559999999999998


Q ss_pred             EEecC
Q 021399          228 TYVTE  232 (313)
Q Consensus       228 ~~~~~  232 (313)
                      ++..+
T Consensus       262 ~i~~~  266 (275)
T PF00780_consen  262 TIPLP  266 (275)
T ss_pred             EEECC
Confidence            87643

These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity

>PHA02713 hypothetical protein; Provisional

Probab=87.16  E-value=26  Score=32.75  Aligned_cols=23  Identities=22%  Similarity=0.312  Sum_probs=15.8

Q ss_pred             CCCeEEEeeCC------CcEEEEECCCCe
Q 021399           63 DSMTLITGSAD------QTAKLWNVETGA   85 (313)
Q Consensus        63 ~~~~l~s~s~D------~~v~vWd~~~~~   85 (313)
                      ++.+++.||.+      ..+..||+.+..
T Consensus       303 ~~~IYviGG~~~~~~~~~~v~~Yd~~~n~  331 (557)
T PHA02713        303 DNEIIIAGGYNFNNPSLNKVYKINIENKI  331 (557)
T ss_pred             CCEEEEEcCCCCCCCccceEEEEECCCCe
Confidence            56788888864      346778877654

>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]

Probab=86.32  E-value=31  Score=32.84  Aligned_cols=182  Identities=11%  Similarity=0.089  Sum_probs=86.4

Q ss_pred             CCeEEEeCCCCcEEEEecCCCCceEEEEECCCCCeEEEeeCCCcEEEEECCCCeEEE-Ee---cCCCCeeEEEeecCCeE
Q 021399           32 HTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLF-TF---NFDSPARSVDFAVGDKL  107 (313)
Q Consensus        32 ~~i~iw~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~v~vWd~~~~~~~~-~~---~~~~~~~~~~~~~~~~~  107 (313)
                      -.|+|++. .|..++.+--..+.+-.+.|+.+. .|+.-..||++.++++....... ..   .....+..+.+...+..
T Consensus        64 ~~I~If~~-sG~lL~~~~w~~~~lI~mgWs~~e-eLI~v~k~g~v~Vy~~~ge~ie~~svg~e~~~~~I~ec~~f~~GVa  141 (829)
T KOG2280|consen   64 PYIRIFNI-SGQLLGRILWKHGELIGMGWSDDE-ELICVQKDGTVHVYGLLGEFIESNSVGFESQMSDIVECRFFHNGVA  141 (829)
T ss_pred             eeEEEEec-cccchHHHHhcCCCeeeecccCCc-eEEEEeccceEEEeecchhhhcccccccccccCceeEEEEecCceE
Confidence            34666664 566665555545588889999765 45566899999999975322111 01   12234555555544444


Q ss_pred             EEEECCCceecccccee--eeeeeCCCCCCCceEEEecCCCCceEEEEEccCCCEEEEeeCCCe--EEEEEC--CCCcee
Q 021399          108 AVITTDPFMELNSAIHV--KRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAI--VRIWDT--ETGKLL  181 (313)
Q Consensus       108 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~t~~~d~~--i~lwd~--~~~~~~  181 (313)
                      +....+.+...++....  +....-+.....           .....++.|......--.-+-.  ..++-.  ...+..
T Consensus       142 vlt~~g~v~~i~~~~~~~~~~~~diP~~~~~-----------~~~Wt~~~~~~~~~~ll~v~~~v~~~~~q~~~~~~q~~  210 (829)
T KOG2280|consen  142 VLTVSGQVILINGVEEPKLRKMPDIPYNELP-----------KSCWTVFQPHRQSTILLDVDVAVGLHICQVEESRVQLH  210 (829)
T ss_pred             EEecCCcEEEEcCCCcchhhhCCCCCCccCC-----------CcceeEecCCCcceeEEeechhhhhcccceeccccccc
Confidence            44433333333222111  111110110000           0111111121110000000100  011111  111111


Q ss_pred             eecccccCceeceEEEEECCCCCEEEEeeCCCcEEEEECCCCcEEEEEe
Q 021399          182 KESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYV  230 (313)
Q Consensus       182 ~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~  230 (313)
                       .+.  .. ...+..+..||+..+|+--..+|.|.+-+.+..++.-++.
T Consensus       211 -~~~--~~-~~~~~ki~VS~n~~~laLyt~~G~i~~vs~D~~~~lce~~  255 (829)
T KOG2280|consen  211 -ALS--WP-NSSVVKISVSPNRRFLALYTETGKIWVVSIDLSQILCEFN  255 (829)
T ss_pred             -ccC--CC-CceEEEEEEcCCcceEEEEecCCcEEEEecchhhhhhccC
Confidence             111  11 2457778899999999999999999888777666555543

>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase

Probab=85.58  E-value=19  Score=29.77  Aligned_cols=63  Identities=13%  Similarity=0.074  Sum_probs=42.3

Q ss_pred             cCCCEEEEeeCCCCeEEEeCCCCcEEEEecCCCCceEEEEECCCCCeEEEeeCCCcEEEEECCCCe
Q 021399           20 KDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGA   85 (313)
Q Consensus        20 ~~g~~l~s~s~d~~i~iw~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~v~vWd~~~~~   85 (313)
                      ..++.|+.|..+| +.+++........... +...|..+..-|+-+.++.= .|+++.++++..-.
T Consensus         5 ~~~~~L~vGt~~G-l~~~~~~~~~~~~~i~-~~~~I~ql~vl~~~~~llvL-sd~~l~~~~L~~l~   67 (275)
T PF00780_consen    5 SWGDRLLVGTEDG-LYVYDLSDPSKPTRIL-KLSSITQLSVLPELNLLLVL-SDGQLYVYDLDSLE   67 (275)
T ss_pred             cCCCEEEEEECCC-EEEEEecCCccceeEe-ecceEEEEEEecccCEEEEE-cCCccEEEEchhhc
Confidence            4578999999998 8888883332222222 23349999988876655543 45999999986543

These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity

>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation

Probab=85.51  E-value=19  Score=29.65  Aligned_cols=150  Identities=9%  Similarity=0.130  Sum_probs=80.7

Q ss_pred             ceeEEEEccCCCEEEEee-CCCCeEEEeCCCCcEEEEe-cCCCCceEEEEECCCCCeEEEeeCCCcEEEEE-CCCCeEE-
Q 021399           12 PLTYLKYNKDGDLLFSCA-KDHTPTVWFADNGERLGTY-RGHNGAVWCCDVSRDSMTLITGSADQTAKLWN-VETGAQL-   87 (313)
Q Consensus        12 ~v~~~~fs~~g~~l~s~s-~d~~i~iw~~~~~~~~~~~-~~H~~~V~~~~~~~~~~~l~s~s~D~~v~vWd-~~~~~~~-   87 (313)
                      .+...+.+++|+.++... .++.-.+|-...+...... .+  ..+...+|++++...+....+...+++. ..++... 
T Consensus        25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~~~~~~~g--~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~~~  102 (253)
T PF10647_consen   25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGPVRPVLTG--GSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTGEP  102 (253)
T ss_pred             cccceEECCCCCeEEEEEEcCCCCEEEEEcCCCcceeeccC--CccccccccCCCCEEEEEcCCCceEEEEecCCCccee
Confidence            577899999999887765 2334455544444433333 33  3678889999977666656666667763 3333222 


Q ss_pred             EEecC---CCCeeEEEeecCCeEEEEEC-CCceeccccceeeeeeeCCCC---CCCceEEEecCCCCceEEEEEccCCCE
Q 021399           88 FTFNF---DSPARSVDFAVGDKLAVITT-DPFMELNSAIHVKRIARDPAD---QGGESVLILKGPQGRINRAVWGPLNRT  160 (313)
Q Consensus        88 ~~~~~---~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~i~~~~~~~~~~~  160 (313)
                      .....   ...+..+.+++++.-+++.. ..-   ...+.+-.+.++...   .-.............+..+.|.+++..
T Consensus       103 ~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~---~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~~~L  179 (253)
T PF10647_consen  103 VEVDWPGLRGRITALRVSPDGTRVAVVVEDGG---GGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSDDSTL  179 (253)
T ss_pred             EEecccccCCceEEEEECCCCcEEEEEEecCC---CCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeecCCCEE
Confidence            11111   12678888998765544432 110   011222223332221   001112222233457889999998886


Q ss_pred             EEEeeC
Q 021399          161 IISAGE  166 (313)
Q Consensus       161 i~t~~~  166 (313)
                      ++.+..
T Consensus       180 ~V~~~~  185 (253)
T PF10647_consen  180 VVLGRS  185 (253)
T ss_pred             EEEeCC
Confidence            665543

It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.

>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family

Probab=85.46  E-value=31  Score=32.00  Aligned_cols=74  Identities=15%  Similarity=0.199  Sum_probs=49.9

Q ss_pred             EEEEccCCCEEEEeeCC-----C-----------CeEEEeCCCCcEEEEecCCCCceEE---------EEECCCCC---e
Q 021399           15 YLKYNKDGDLLFSCAKD-----H-----------TPTVWFADNGERLGTYRGHNGAVWC---------CDVSRDSM---T   66 (313)
Q Consensus        15 ~~~fs~~g~~l~s~s~d-----~-----------~i~iw~~~~~~~~~~~~~H~~~V~~---------~~~~~~~~---~   66 (313)
                      ..+++|+..+++-+...     +           .|.--|.++|+....++.....++.         +.+..+|+   .
T Consensus       238 ~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~~TG~~~W~~Q~~~~D~wD~d~~~~p~l~d~~~~G~~~~~  317 (527)
T TIGR03075       238 TGSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARDPDTGKIKWHYQTTPHDEWDYDGVNEMILFDLKKDGKPRKL  317 (527)
T ss_pred             ceeEcCCCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEccccCCEEEeeeCCCCCCccccCCCCcEEEEeccCCcEEEE
Confidence            35778777766665522     2           3444588899988887753333332         22334665   7


Q ss_pred             EEEeeCCCcEEEEECCCCeEEE
Q 021399           67 LITGSADQTAKLWNVETGAQLF   88 (313)
Q Consensus        67 l~s~s~D~~v~vWd~~~~~~~~   88 (313)
                      ++.+..+|.+.+.|-++++.+.
T Consensus       318 v~~~~K~G~~~vlDr~tG~~i~  339 (527)
T TIGR03075       318 LAHADRNGFFYVLDRTNGKLLS  339 (527)
T ss_pred             EEEeCCCceEEEEECCCCceec
Confidence            7889999999999999998764

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.

>PHA03098 kelch-like protein; Provisional

Probab=83.51  E-value=37  Score=31.40  Aligned_cols=64  Identities=6%  Similarity=-0.002  Sum_probs=33.3

Q ss_pred             cCCCEEEEeeCCC------CeEEEeCCCCcEEE--EecCCCCceEEEEECCCCCeEEEeeCC-----CcEEEEECCCCe
Q 021399           20 KDGDLLFSCAKDH------TPTVWFADNGERLG--TYRGHNGAVWCCDVSRDSMTLITGSAD-----QTAKLWNVETGA   85 (313)
Q Consensus        20 ~~g~~l~s~s~d~------~i~iw~~~~~~~~~--~~~~H~~~V~~~~~~~~~~~l~s~s~D-----~~v~vWd~~~~~   85 (313)
                      .++..++.||.++      .+..||..+.+-..  .+.........+.  -++++++.||.+     ..+..||+.+.+
T Consensus       293 ~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~R~~~~~~~--~~~~lyv~GG~~~~~~~~~v~~yd~~~~~  369 (534)
T PHA03098        293 LNNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPRKNPGVTV--FNNRIYVIGGIYNSISLNTVESWKPGESK  369 (534)
T ss_pred             ECCEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCcccccceEEE--ECCEEEEEeCCCCCEecceEEEEcCCCCc
Confidence            3456666666543      45567766655321  1111111112222  256777888865     347778877654

>smart00564 PQQ beta-propeller repeat

Probab=81.15  E-value=4.2  Score=21.01  Aligned_cols=25  Identities=32%  Similarity=0.292  Sum_probs=20.5

Q ss_pred             EEEEeeCCCCeEEEeCCCCcEEEEe
Q 021399           24 LLFSCAKDHTPTVWFADNGERLGTY   48 (313)
Q Consensus        24 ~l~s~s~d~~i~iw~~~~~~~~~~~   48 (313)
                      .++.++.++.+...|.++|+.+.++
T Consensus         8 ~v~~~~~~g~l~a~d~~~G~~~W~~   32 (33)
T smart00564        8 TVYVGSTDGTLYALDAKTGEILWTY   32 (33)
T ss_pred             EEEEEcCCCEEEEEEcccCcEEEEc
Confidence            6777888999999999998877654

Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.

>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases

Probab=80.84  E-value=36  Score=29.35  Aligned_cols=59  Identities=12%  Similarity=0.150  Sum_probs=36.0

Q ss_pred             CCEEEEeeCCCeEEEEECCCCceee-ecccccCceeceEEEEECCCCCEEEEeeCCCcEE
Q 021399          158 NRTIISAGEDAIVRIWDTETGKLLK-ESDKETGHKKTITSLAKAADGSHFLTGSLDKSAK  216 (313)
Q Consensus       158 ~~~i~t~~~d~~i~lwd~~~~~~~~-~~~~~~~h~~~v~~~~~s~~~~~l~s~s~dg~i~  216 (313)
                      +.+|+..-..+.|...++.....+. ...........+..++..|||...++-..+|+|.
T Consensus       271 g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~r~~~v~~~pDG~Lyv~~d~~G~iy  330 (331)
T PF07995_consen  271 GDLFVADYGGGRIWRLDLDEDGSVTEEEEFLGGFGGRPRDVAQGPDGALYVSDDSDGKIY  330 (331)
T ss_dssp             TEEEEEETTTTEEEEEEEETTEEEEEEEEECTTSSS-EEEEEEETTSEEEEEE-TTTTEE
T ss_pred             CcEEEecCCCCEEEEEeeecCCCccceEEccccCCCCceEEEEcCCCeEEEEECCCCeEe
Confidence            4455555556677777765433222 2111223445789999999999888888888763

The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....

>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=80.61  E-value=7.2  Score=21.16  Aligned_cols=30  Identities=13%  Similarity=0.121  Sum_probs=18.7

Q ss_pred             CCCCceEEEEECCCCCeE-EEeeCC--CcEEEE
Q 021399           50 GHNGAVWCCDVSRDSMTL-ITGSAD--QTAKLW   79 (313)
Q Consensus        50 ~H~~~V~~~~~~~~~~~l-~s~s~D--~~v~vW   79 (313)
                      ...+.-....|+|||+.| .++..+  |.-.||
T Consensus         6 ~~~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy   38 (39)
T PF07676_consen    6 NSPGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY   38 (39)
T ss_dssp             -SSSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred             cCCccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence            344556778999999855 455555  666665

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....

>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]

Probab=80.55  E-value=63  Score=31.98  Aligned_cols=74  Identities=12%  Similarity=0.043  Sum_probs=46.2

Q ss_pred             ccccceeEEEEccCC--C----EEEEeeCCCCeEEEe-CCCCcEEEEe--cC--CCCceEEEEECCCCCeEEEeeCCCcE
Q 021399            8 GHERPLTYLKYNKDG--D----LLFSCAKDHTPTVWF-ADNGERLGTY--RG--HNGAVWCCDVSRDSMTLITGSADQTA   76 (313)
Q Consensus         8 ~h~~~v~~~~fs~~g--~----~l~s~s~d~~i~iw~-~~~~~~~~~~--~~--H~~~V~~~~~~~~~~~l~s~s~D~~v   76 (313)
                      .-+..|.|+.++|-|  +    +++.|..+..+.+-- ..+...+...  .+  =..+|.-..+-.|..+|..+..||.+
T Consensus       528 ~~e~evaCLDisp~~d~~~~s~~~aVG~Ws~~~~~l~~~pd~~~~~~~~l~~~~iPRSIl~~~~e~d~~yLlvalgdG~l  607 (1096)
T KOG1897|consen  528 EFEYEVACLDISPLGDAPNKSRLLAVGLWSDISMILTFLPDLILITHEQLSGEIIPRSILLTTFEGDIHYLLVALGDGAL  607 (1096)
T ss_pred             eecceeEEEecccCCCCCCcceEEEEEeecceEEEEEECCCcceeeeeccCCCccchheeeEEeeccceEEEEEcCCceE
Confidence            345578899999752  2    688888776666543 3333333222  11  11245555666667899999999998


Q ss_pred             EEEEC
Q 021399           77 KLWNV   81 (313)
Q Consensus        77 ~vWd~   81 (313)
                      .-+.+
T Consensus       608 ~~fv~  612 (1096)
T KOG1897|consen  608 LYFVL  612 (1096)
T ss_pred             EEEEE
Confidence            86654

>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast [])

Probab=80.45  E-value=14  Score=28.32  Aligned_cols=30  Identities=13%  Similarity=0.055  Sum_probs=21.8

Q ss_pred             ceEEEEECCCC------CeEEEeeCCCcEEEEECCC
Q 021399           54 AVWCCDVSRDS------MTLITGSADQTAKLWNVET   83 (313)
Q Consensus        54 ~V~~~~~~~~~------~~l~s~s~D~~v~vWd~~~   83 (313)
                      .|.+++|||.|      -+|+.-..++.+.||....
T Consensus        87 ~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~  122 (173)
T PF12657_consen   87 QVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPG  122 (173)
T ss_pred             cEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence            57788888854      2567777888888887653

The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].

>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=80.29  E-value=42  Score=29.81  Aligned_cols=124  Identities=18%  Similarity=0.121  Sum_probs=61.5

Q ss_pred             eEEEEECCCCCeEEE-eeCC----CcEEEEECCCCeEEEEecCCCCeeEEEeecCCeEE-EEECCCceeccccceeeeee
Q 021399           55 VWCCDVSRDSMTLIT-GSAD----QTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLA-VITTDPFMELNSAIHVKRIA  128 (313)
Q Consensus        55 V~~~~~~~~~~~l~s-~s~D----~~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~  128 (313)
                      +....++|++++++- -+..    .++++.|+.+++.+...-.......+.|.++++.. ....+.............+.
T Consensus       126 ~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~~~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v~  205 (414)
T PF02897_consen  126 LGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIENPKFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQVY  205 (414)
T ss_dssp             EEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEEEESEEEEECTTSSEEEEEECSTTTSS-CCGCCEEEE
T ss_pred             eeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCcccccccceEEEeCCCCEEEEEEeCcccccccCCCCcEEE
Confidence            346788999997653 2333    44999999999765432111112237788775444 33333211100000111111


Q ss_pred             eCCCC-CCCceEEEecCCCCc--eEEEEEccCCCEEEEee---CC-CeEEEEECCCC
Q 021399          129 RDPAD-QGGESVLILKGPQGR--INRAVWGPLNRTIISAG---ED-AIVRIWDTETG  178 (313)
Q Consensus       129 ~~~~~-~~~~~~~~~~~~~~~--i~~~~~~~~~~~i~t~~---~d-~~i~lwd~~~~  178 (313)
                      ..... ...+-.+.++.....  ...+..++++++++...   .+ ..+.+.|....
T Consensus       206 ~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~  262 (414)
T PF02897_consen  206 RHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDG  262 (414)
T ss_dssp             EEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCT
T ss_pred             EEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEecccc
Confidence            11111 112223444443333  56777889998876432   23 45888888764

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	313
3zwl_B	369	Structure Of Eukaryotic Translation Initiation Fact		9e-60
2ymu_A	577	Structure Of A Highly Repetitive Propeller Structur		1e-18
2ovp_B	445	Structure Of The Skp1-Fbw7 Complex Length = 445		2e-18
3n0e_A	315	Crystal Structure Of Wdr5 Mutant (W330y) Length = 3		1e-16
3n0e_A	315	Crystal Structure Of Wdr5 Mutant (W330y) Length = 3		2e-05
3n0d_A	315	Crystal Structure Of Wdr5 Mutant (W330f) Length = 3		1e-16
3n0d_A	315	Crystal Structure Of Wdr5 Mutant (W330f) Length = 3		2e-05
2cnx_A	315	Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.		1e-16
2cnx_A	315	Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.		6e-05
3emh_A	318	Structural Basis Of Wdr5-Mll Interaction Length = 3		1e-16
3emh_A	318	Structural Basis Of Wdr5-Mll Interaction Length = 3		2e-05
2g9a_A	311	Structural Basis For The Specific Recognition Of Me		1e-16
2g9a_A	311	Structural Basis For The Specific Recognition Of Me		2e-05
3mxx_A	315	Crystal Structure Of Wdr5 Mutant (S62a) Length = 31		1e-16
3mxx_A	315	Crystal Structure Of Wdr5 Mutant (S62a) Length = 31		4e-05
4a7j_A	318	Symmetric Dimethylation Of H3 Arginine 2 Is A Novel		1e-16
4a7j_A	318	Symmetric Dimethylation Of H3 Arginine 2 Is A Novel		2e-05
2h9l_A	329	Wdr5delta23 Length = 329		1e-16
2h9l_A	329	Wdr5delta23 Length = 329		2e-05
2g99_A	308	Structural Basis For The Specific Recognition Of Me		1e-16
2g99_A	308	Structural Basis For The Specific Recognition Of Me		2e-05
3smr_A	312	Crystal Structure Of Human Wd Repeat Domain 5 With		1e-16
3smr_A	312	Crystal Structure Of Human Wd Repeat Domain 5 With		2e-05
3psl_A	318	Fine-Tuning The Stimulation Of Mll1 Methyltransfera		2e-16
3psl_A	318	Fine-Tuning The Stimulation Of Mll1 Methyltransfera		2e-05
2h13_A	317	Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length		2e-16
2h13_A	317	Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length		2e-05
2h9m_A	313	Wdr5 In Complex With Unmodified H3k4 Peptide Length		2e-16
2h9m_A	313	Wdr5 In Complex With Unmodified H3k4 Peptide Length		2e-05
2h68_A	312	Histone H3 Recognition And Presentation By The Wdr5		2e-16
2h68_A	312	Histone H3 Recognition And Presentation By The Wdr5		2e-05
2gnq_A	336	Structure Of Wdr5 Length = 336		2e-16
2gnq_A	336	Structure Of Wdr5 Length = 336		2e-05
2xl2_A	334	Wdr5 In Complex With An Rbbp5 Peptide Recruited To		2e-16
2xl2_A	334	Wdr5 In Complex With An Rbbp5 Peptide Recruited To		2e-05
2co0_A	315	Wdr5 And Unmodified Histone H3 Complex At 2.25 Angs		2e-16
2co0_A	315	Wdr5 And Unmodified Histone H3 Complex At 2.25 Angs		6e-05
3iza_B	1263	Structure Of An Apoptosome-Procaspase-9 Card Comple		1e-13
3iza_B	1263	Structure Of An Apoptosome-Procaspase-9 Card Comple		4e-07
3shf_A	1256	Crystal Structure Of The R265s Mutant Of Full-Lengt		9e-13
3shf_A	1256	Crystal Structure Of The R265s Mutant Of Full-Lengt		8e-08
3sfz_A	1249	Crystal Structure Of Full-Length Murine Apaf-1 Leng		1e-12
3sfz_A	1249	Crystal Structure Of Full-Length Murine Apaf-1 Leng		8e-08
1erj_A	393	Crystal Structure Of The C-Terminal Wd40 Domain Of		2e-12
1erj_A	393	Crystal Structure Of The C-Terminal Wd40 Domain Of		4e-09
1gxr_A	337	Wd40 Region Of Human Groucho/tle1 Length = 337		4e-12
3mks_B	464	Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH		2e-10
3zey_7	318	High-resolution Cryo-electron Microscopy Structure		2e-10
3zey_7	318	High-resolution Cryo-electron Microscopy Structure		7e-05
1nex_B	464	Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Comp		3e-10
1vyh_C	410	Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410		5e-10
1vyh_C	410	Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410		1e-06
1p22_A	435	Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex		3e-09
2pbi_B	354	The Multifunctional Nature Of Gbeta5RGS9 REVEALED F		5e-09
2pbi_B	354	The Multifunctional Nature Of Gbeta5RGS9 REVEALED F		9e-07
3rfh_A	319	Crystal Structure Of The Yeast Rack1 Dimer In Space		1e-08
3iz6_a	380	Localization Of The Small Subunit Ribosomal Protein		2e-08
1trj_A	314	Homology Model Of Yeast Rack1 Protein Fitted Into 1		2e-08
3izb_a	319	Localization Of The Small Subunit Ribosomal Protein		2e-08
3jyv_R	313	Structure Of The 40s Rrna And Proteins And PE TRNA		2e-08
3rfg_A	319	Crystal Structure Of The Yeast Rack1 Dimer In Space		2e-08
2xzm_R	343	Crystal Structure Of The Eukaryotic 40s Ribosomal S		8e-08
4aow_A	340	Crystal Structure Of The Human Rack1 Protein At A R		9e-08
2zkq_a	317	Structure Of A Mammalian Ribosomal 40s Subunit With		1e-07
2yno_A	310	Yeast Betaprime Cop 1-304h6 Length = 310		1e-07
2ynn_A	304	Yeast Betaprime Cop 1-304 With Ktktn Motif Length =		1e-07
3frx_A	319	Crystal Structure Of The Yeast Orthologue Of Rack1,		2e-07
2ynp_A	604	Yeast Betaprime Cop 1-604 With Ktktn Motif Length =		3e-07
3fm0_A	345	Crystal Structure Of Wd40 Protein Ciao1 Length = 34		5e-07
3mkq_A	814	Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subco		7e-07
3odt_A	313	Crystal Structure Of Wd40 Beta Propeller Domain Of		4e-06
1got_B	340	Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimer		4e-06
1a0r_B	340	Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-		4e-06
2bcj_B	340	Crystal Structure Of G Protein-coupled Receptor Kin		4e-06
1gg2_B	340	G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Bet		4e-06
3sn6_B	351	Crystal Structure Of The Beta2 Adrenergic Receptor-		4e-06
4gga_A	420	Structural Analysis Of Human Cdc20 Supports Multi-S		2e-05
4ggd_A	431	Structural Analysis Of Human Cdc20 Supports Multisi		2e-05
4ggc_A	318	Structural Analysis Of Human Cdc20 Supports Multi-S		2e-05
2aq5_A	402	Crystal Structure Of Murine Coronin-1 Length = 402		4e-05
2b4e_A	402	Crystal Structure Of Murine Coronin-1: Monoclinic F		5e-05
1nr0_A	611	Two Seven-Bladed Beta-Propeller Domains Revealed By		7e-05
4a11_B	408	Structure Of The Hsddb1-Hscsa Complex Length = 408		7e-05
4a11_B	408	Structure Of The Hsddb1-Hscsa Complex Length = 408		9e-05
4g56_B	357	Crystal Structure Of Full Length Prmt5/mep50 Comple		8e-05
3dm0_A	694	Maltose Binding Protein Fusion With Rack1 From A. T		9e-05
3vl1_A	420	Crystal Structure Of Yeast Rpn14 Length = 420		1e-04
3vl1_A	420	Crystal Structure Of Yeast Rpn14 Length = 420		5e-04
3acp_A	417	Crystal Structure Of Yeast Rpn14, A Chaperone Of Th		1e-04
3acp_A	417	Crystal Structure Of Yeast Rpn14, A Chaperone Of Th		5e-04
1r5m_A	425	Crystal Structure Of The C-Terminal Wd40 Domain Of		2e-04
1k8k_C	372	Crystal Structure Of Arp23 COMPLEX Length = 372		3e-04
4aez_A	401	Crystal Structure Of Mitotic Checkpoint Complex Len		3e-04
3ow8_A	321	Crystal Structure Of The Wd Repeat-Containing Prote		3e-04
3dxk_C	372	Structure Of Bos Taurus Arp23 COMPLEX WITH BOUND IN		3e-04
3cfs_B	414	Structural Basis Of The Interaction Of Rbap46RBAP48		9e-04

>pdb|3ZWL|B Chain B, Structure Of Eukaryotic Translation Initiation Factor Eif3i Complex With Eif3b C-Terminus (655-700) Length = 369

Iteration: 1
 Score =  226 bits (577), Expect = 9e-60,   Method: Compositional matrix adjust.
 Identities = 123/324 (37%), Positives = 185/324 (57%), Gaps = 19/324 (5%)
Query: 1   MRPILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDV 60
           M+ I + GHERPLT +KYNK+GDLLFSC+KD + +VW++ NGERLGT  GH G +W  DV
Sbjct: 23  MKAIKLTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSIDV 82
Query: 61  SRDSMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNS 120
              +   +TGSAD + KLW+V  G  + T+    P + V+F+      +   D  M+   
Sbjct: 83  DCFTKYCVTGSADYSIKLWDVSNGQCVATWKSPVPVKRVEFSPCGNYFLAILDNVMKNPG 142
Query: 121 AIHVKRIARDPADQGGESVLILKGPQGRI---------NRAVWGPLNRTIISAGEDAIVR 171
           +I++  I RD A    E   + + P  +I           A W    + II+  +D  + 
Sbjct: 143 SINIYEIERDSATH--ELTKVSEEPIHKIITHEGLDAATVAGWSTKGKYIIAGHKDGKIS 200
Query: 172 IWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVT 231
            +D       +  D    H+K+I+ +  + D ++F+T S D ++ L D  TL+++K Y T
Sbjct: 201 KYDVSNN--YEYVDSIDLHEKSISDMQFSPDLTYFITSSRDTNSFLVDVSTLQVLKKYET 258
Query: 232 ERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPI 291
           + P+N   ++PL + ++LGGGQ+A  VTTT    GKFEA+F+ KI +EEIG V+GHFGP+
Sbjct: 259 DCPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEEEIGRVQGHFGPL 318
Query: 292 NALAFNPDGKRY------GFLLLQ 309
           N +A +P G  Y      GF+ L 
Sbjct: 319 NTVAISPQGTSYASGGEDGFIRLH 342

>pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure Length = 577

Iteration: 1
 Score = 90.5 bits (223), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 82/299 (27%), Positives = 133/299 (44%), Gaps = 38/299 (12%)
Query: 6   MKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSM 65
           ++ H   +  + ++ DG  + S + D T  +W   NG+ L T  GH+ +VW    S D  
Sbjct: 12  LEAHSSSVRGVAFSPDGQTIASASDDKTVKLW-NRNGQLLQTLTGHSSSVWGVAFSPDGQ 70
Query: 66  TLITGSADQTAKLWNVETGAQLFTFN-FDSPARSVDFAV-GDKLAVITTDPFMELNSAIH 123
           T+ + S D+T KLWN   G  L T     S  R V F+  G  +A  + D  ++L     
Sbjct: 71  TIASASDDKTVKLWN-RNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKL----- 124
Query: 124 VKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKE 183
                    ++ G+ +  L G    +    + P  +TI SA +D  V++W+   G+LL+ 
Sbjct: 125 --------WNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQT 175
Query: 184 SDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVT-ERPVNAVTMSP 242
               TGH  ++  +A + DG    + S DK+ KLW+ R  +L++T       V  V  SP
Sbjct: 176 ---LTGHSSSVWGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVRGVAFSP 231
Query: 243 LLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGK 301
             D   +    D   V   +            ++LQ     + GH   +N +AF PDG+
Sbjct: 232 --DGQTIASASDDKTVKLWNRNG---------QLLQT----LTGHSSSVNGVAFRPDGQ 275

>pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex Length = 445

Iteration: 1
 Score = 89.4 bits (220), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 83/307 (27%), Positives = 135/307 (43%), Gaps = 54/307 (17%)
Query: 3   PILMKGHE-RPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVS 61
           P ++KGH+   +T L++   G+ + S + D+T  VW A  G+ L T  GH G VW   + 
Sbjct: 111 PKVLKGHDDHVITCLQFC--GNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQM- 167
Query: 62  RDSMTLITGSADQTAKLWNVETGAQLFT-FNFDSPARSVDFAVGDKLAVITTDPFMELNS 120
           RD++ +I+GS D+T K+WN ETG  + T +   S  R +                     
Sbjct: 168 RDNI-IISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMH-------------------- 206
Query: 121 AIHVKRIARDPAD--------QGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRI 172
            +H KR+     D        + G+ + +L G    +    +    R ++S   D +V++
Sbjct: 207 -LHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYD--GRRVVSGAYDFMVKV 263
Query: 173 WDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTE 232
           WD ET   L       GH   + SL    DG H ++GSLD S ++WD  T   I T    
Sbjct: 264 WDPETETCLHTLQ---GHTNRVYSL--QFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGH 318
Query: 233 RPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPIN 292
           + + +     L D++++ G  D S V   D + G+           + + G   H   + 
Sbjct: 319 QSLTS--GMELKDNILVSGNAD-STVKIWDIKTGQ---------CLQTLQGPNKHQSAVT 366
Query: 293 ALAFNPD 299
            L FN +
Sbjct: 367 CLQFNKN 373

>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y) Length = 315

Iteration: 1
 Score = 84.0 bits (206), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 57/223 (25%), Positives = 109/223 (48%), Gaps = 11/223 (4%)
Query: 6   MKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSM 65
           + GH+  ++ + ++ D +LL S + D T  +W   +G+ L T +GH+  V+CC+ +  S 
Sbjct: 64  ISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSN 123
Query: 66  TLITGSADQTAKLWNVETGAQLFTFNFDS-PARSVDFAVGDKLAVITTDPFMELNSAIHV 124
            +++GS D++ ++W+V+TG  L T    S P  +V F     L V +        S   +
Sbjct: 124 LIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSS--------SYDGL 175
Query: 125 KRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKES 184
            RI    + Q  ++++    P   ++   + P  + I++A  D  +++WD   GK LK  
Sbjct: 176 CRIWDTASGQCLKTLIDDDNPP--VSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTY 233
Query: 185 DKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIK 227
                 K  I +      G   ++GS D    +W+ +T E+++
Sbjct: 234 TGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQ 276

>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y) Length = 315

Iteration: 1
 Score = 47.0 bits (110), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 39/162 (24%), Positives = 71/162 (43%), Gaps = 18/162 (11%)
Query: 140 LILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAK 199
             L G    ++   + P    + S+  D +++IW    GK  K     +GHK  I+ +A 
Sbjct: 20  FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTI---SGHKLGISDVAW 76
Query: 200 AADGSHFLTGSLDKSAKLWDARTLELIKTYV-TERPVNAVTMSPLLDHVVLGGGQDASAV 258
           ++D +  ++ S DK+ K+WD  + + +KT       V     +P  + +V G   +  +V
Sbjct: 77  SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDE--SV 134
Query: 259 TTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDG 300
              D + GK             +  +  H  P++A+ FN DG
Sbjct: 135 RIWDVKTGKC------------LKTLPAHSDPVSAVHFNRDG 164

>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f) Length = 315

Iteration: 1
 Score = 84.0 bits (206), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 57/223 (25%), Positives = 109/223 (48%), Gaps = 11/223 (4%)
Query: 6   MKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSM 65
           + GH+  ++ + ++ D +LL S + D T  +W   +G+ L T +GH+  V+CC+ +  S 
Sbjct: 64  ISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSN 123
Query: 66  TLITGSADQTAKLWNVETGAQLFTFNFDS-PARSVDFAVGDKLAVITTDPFMELNSAIHV 124
            +++GS D++ ++W+V+TG  L T    S P  +V F     L V +        S   +
Sbjct: 124 LIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSS--------SYDGL 175
Query: 125 KRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKES 184
            RI    + Q  ++++    P   ++   + P  + I++A  D  +++WD   GK LK  
Sbjct: 176 CRIWDTASGQCLKTLIDDDNPP--VSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTY 233
Query: 185 DKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIK 227
                 K  I +      G   ++GS D    +W+ +T E+++
Sbjct: 234 TGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQ 276

>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f) Length = 315

Iteration: 1
 Score = 46.6 bits (109), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 39/162 (24%), Positives = 71/162 (43%), Gaps = 18/162 (11%)
Query: 140 LILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAK 199
             L G    ++   + P    + S+  D +++IW    GK  K     +GHK  I+ +A 
Sbjct: 20  FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTI---SGHKLGISDVAW 76
Query: 200 AADGSHFLTGSLDKSAKLWDARTLELIKTYV-TERPVNAVTMSPLLDHVVLGGGQDASAV 258
           ++D +  ++ S DK+ K+WD  + + +KT       V     +P  + +V G   +  +V
Sbjct: 77  SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDE--SV 134
Query: 259 TTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDG 300
              D + GK             +  +  H  P++A+ FN DG
Sbjct: 135 RIWDVKTGKC------------LKTLPAHSDPVSAVHFNRDG 164

>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1 Angstrom Length = 315

Iteration: 1
 Score = 84.0 bits (206), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 57/223 (25%), Positives = 109/223 (48%), Gaps = 11/223 (4%)
Query: 6   MKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSM 65
           + GH+  ++ + ++ D +LL S + D T  +W   +G+ L T +GH+  V+CC+ +  S 
Sbjct: 64  ISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSN 123
Query: 66  TLITGSADQTAKLWNVETGAQLFTFNFDS-PARSVDFAVGDKLAVITTDPFMELNSAIHV 124
            +++GS D++ ++W+V+TG  L T    S P  +V F     L V +        S   +
Sbjct: 124 LIVSGSFDESVRIWDVKTGMCLKTLPAHSDPVSAVHFNRDGSLIVSS--------SYDGL 175
Query: 125 KRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKES 184
            RI    + Q  ++++    P   ++   + P  + I++A  D  +++WD   GK LK  
Sbjct: 176 CRIWDTASGQCLKTLIDDDNPP--VSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTY 233
Query: 185 DKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIK 227
                 K  I +      G   ++GS D    +W+ +T E+++
Sbjct: 234 TGHKNEKYCIFANFSVTGGKWIVSGSEDNMVYIWNLQTKEIVQ 276

>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1 Angstrom Length = 315

Iteration: 1
 Score = 45.1 bits (105), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 36/163 (22%), Positives = 70/163 (42%), Gaps = 18/163 (11%)
Query: 139 VLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLA 198
           +  L G    ++   + P    + S+  D +++IW    GK  K     +GHK  I+ +A
Sbjct: 19  MFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTI---SGHKLGISDVA 75
Query: 199 KAADGSHFLTGSLDKSAKLWDARTLELIKTYV-TERPVNAVTMSPLLDHVVLGGGQDASA 257
            ++D +  ++ S DK+ K+WD  + + +KT       V     +P  + +V G   ++  
Sbjct: 76  WSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDES-- 133
Query: 258 VTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDG 300
                        + +D      +  +  H  P++A+ FN DG
Sbjct: 134 ------------VRIWDVKTGMCLKTLPAHSDPVSAVHFNRDG 164

>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction Length = 318

Iteration: 1
 Score = 83.6 bits (205), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 57/223 (25%), Positives = 109/223 (48%), Gaps = 11/223 (4%)
Query: 6   MKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSM 65
           + GH+  ++ + ++ D +LL S + D T  +W   +G+ L T +GH+  V+CC+ +  S 
Sbjct: 67  ISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSN 126
Query: 66  TLITGSADQTAKLWNVETGAQLFTFNFDS-PARSVDFAVGDKLAVITTDPFMELNSAIHV 124
            +++GS D++ ++W+V+TG  L T    S P  +V F     L V +        S   +
Sbjct: 127 LIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSS--------SYDGL 178
Query: 125 KRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKES 184
            RI    + Q  ++++    P   ++   + P  + I++A  D  +++WD   GK LK  
Sbjct: 179 CRIWDTASGQCLKTLIDDDNPP--VSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTY 236
Query: 185 DKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIK 227
                 K  I +      G   ++GS D    +W+ +T E+++
Sbjct: 237 TGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQ 279

>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction Length = 318

Iteration: 1
 Score = 46.6 bits (109), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 39/162 (24%), Positives = 71/162 (43%), Gaps = 18/162 (11%)
Query: 140 LILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAK 199
             L G    ++   + P    + S+  D +++IW    GK  K     +GHK  I+ +A 
Sbjct: 23  FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTI---SGHKLGISDVAW 79
Query: 200 AADGSHFLTGSLDKSAKLWDARTLELIKTYV-TERPVNAVTMSPLLDHVVLGGGQDASAV 258
           ++D +  ++ S DK+ K+WD  + + +KT       V     +P  + +V G   +  +V
Sbjct: 80  SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDE--SV 137
Query: 259 TTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDG 300
              D + GK             +  +  H  P++A+ FN DG
Sbjct: 138 RIWDVKTGKC------------LKTLPAHSDPVSAVHFNRDG 167

>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 311

Iteration: 1
 Score = 83.6 bits (205), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 57/223 (25%), Positives = 109/223 (48%), Gaps = 11/223 (4%)
Query: 6   MKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSM 65
           + GH+  ++ + ++ D +LL S + D T  +W   +G+ L T +GH+  V+CC+ +  S 
Sbjct: 60  ISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSN 119
Query: 66  TLITGSADQTAKLWNVETGAQLFTFNFDS-PARSVDFAVGDKLAVITTDPFMELNSAIHV 124
            +++GS D++ ++W+V+TG  L T    S P  +V F     L V +        S   +
Sbjct: 120 LIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSS--------SYDGL 171
Query: 125 KRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKES 184
            RI    + Q  ++++    P   ++   + P  + I++A  D  +++WD   GK LK  
Sbjct: 172 CRIWDTASGQCLKTLIDDDNPP--VSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTY 229
Query: 185 DKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIK 227
                 K  I +      G   ++GS D    +W+ +T E+++
Sbjct: 230 TGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQ 272

>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 311

Iteration: 1
 Score = 46.6 bits (109), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 39/160 (24%), Positives = 71/160 (44%), Gaps = 18/160 (11%)
Query: 142 LKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAA 201
           L G    ++   + P    + S+  D +++IW    GK  K     +GHK  I+ +A ++
Sbjct: 18  LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTI---SGHKLGISDVAWSS 74
Query: 202 DGSHFLTGSLDKSAKLWDARTLELIKTYV-TERPVNAVTMSPLLDHVVLGGGQDASAVTT 260
           D +  ++ S DK+ K+WD  + + +KT       V     +P  + +V G   +  +V  
Sbjct: 75  DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDE--SVRI 132
Query: 261 TDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDG 300
            D + GK             +  +  H  P++A+ FN DG
Sbjct: 133 WDVKTGKC------------LKTLPAHSDPVSAVHFNRDG 160

>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a) Length = 315

Iteration: 1
 Score = 83.6 bits (205), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 57/223 (25%), Positives = 109/223 (48%), Gaps = 11/223 (4%)
Query: 6   MKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSM 65
           + GH+  ++ + ++ D +LL S + D T  +W   +G+ L T +GH+  V+CC+ +  S 
Sbjct: 64  ISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSN 123
Query: 66  TLITGSADQTAKLWNVETGAQLFTFNFDS-PARSVDFAVGDKLAVITTDPFMELNSAIHV 124
            +++GS D++ ++W+V+TG  L T    S P  +V F     L V +        S   +
Sbjct: 124 LIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSS--------SYDGL 175
Query: 125 KRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKES 184
            RI    + Q  ++++    P   ++   + P  + I++A  D  +++WD   GK LK  
Sbjct: 176 CRIWDTASGQCLKTLIDDDNPP--VSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTY 233
Query: 185 DKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIK 227
                 K  I +      G   ++GS D    +W+ +T E+++
Sbjct: 234 TGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQ 276

>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a) Length = 315

Iteration: 1
 Score = 45.4 bits (106), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 38/162 (23%), Positives = 71/162 (43%), Gaps = 18/162 (11%)
Query: 140 LILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAK 199
             L G    ++   + P    + ++  D +++IW    GK  K     +GHK  I+ +A 
Sbjct: 20  FTLAGHTKAVSSVKFSPNGEWLAASSADKLIKIWGAYDGKFEKTI---SGHKLGISDVAW 76
Query: 200 AADGSHFLTGSLDKSAKLWDARTLELIKTYV-TERPVNAVTMSPLLDHVVLGGGQDASAV 258
           ++D +  ++ S DK+ K+WD  + + +KT       V     +P  + +V G   +  +V
Sbjct: 77  SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDE--SV 134
Query: 259 TTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDG 300
              D + GK             +  +  H  P++A+ FN DG
Sbjct: 135 RIWDVKTGKC------------LKTLPAHSDPVSAVHFNRDG 164

>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel Histone Mark That Supports Euchromatin Maintenance Length = 318

Iteration: 1
 Score = 83.6 bits (205), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 59/228 (25%), Positives = 104/228 (45%), Gaps = 54/228 (23%)
Query: 6   MKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSM 65
           + GH+  ++ + ++ D +LL S + D T  +W   +G+ L T +GH+  V+CC+ +  S 
Sbjct: 67  ISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSN 126
Query: 66  TLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVK 125
            +++GS D++ ++W+V+TG  L T     PA S              DP     SA+H  
Sbjct: 127 LIVSGSFDESVRIWDVKTGKCLKTL----PAHS--------------DPV----SAVHFN 164
Query: 126 RIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESD 185
           R                    G +           I+S+  D + RIWDT +G+ LK   
Sbjct: 165 R-------------------DGSL-----------IVSSSYDGLCRIWDTASGQCLKTLI 194
Query: 186 KETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTER 233
            +      ++ +  + +G + L  +LD + KLWD    + +KTY   +
Sbjct: 195 DD--DNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHK 240

>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel Histone Mark That Supports Euchromatin Maintenance Length = 318

Iteration: 1
 Score = 46.6 bits (109), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 39/162 (24%), Positives = 71/162 (43%), Gaps = 18/162 (11%)
Query: 140 LILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAK 199
             L G    ++   + P    + S+  D +++IW    GK  K     +GHK  I+ +A 
Sbjct: 23  FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTI---SGHKLGISDVAW 79
Query: 200 AADGSHFLTGSLDKSAKLWDARTLELIKTYV-TERPVNAVTMSPLLDHVVLGGGQDASAV 258
           ++D +  ++ S DK+ K+WD  + + +KT       V     +P  + +V G   +  +V
Sbjct: 80  SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDE--SV 137
Query: 259 TTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDG 300
              D + GK             +  +  H  P++A+ FN DG
Sbjct: 138 RIWDVKTGKC------------LKTLPAHSDPVSAVHFNRDG 167

>pdb|2H9L|A Chain A, Wdr5delta23 Length = 329

Iteration: 1
 Score = 83.6 bits (205), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 57/223 (25%), Positives = 109/223 (48%), Gaps = 11/223 (4%)
Query: 6   MKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSM 65
           + GH+  ++ + ++ D +LL S + D T  +W   +G+ L T +GH+  V+CC+ +  S 
Sbjct: 78  ISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSN 137
Query: 66  TLITGSADQTAKLWNVETGAQLFTFNFDS-PARSVDFAVGDKLAVITTDPFMELNSAIHV 124
            +++GS D++ ++W+V+TG  L T    S P  +V F     L V +        S   +
Sbjct: 138 LIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSS--------SYDGL 189
Query: 125 KRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKES 184
            RI    + Q  ++++    P   ++   + P  + I++A  D  +++WD   GK LK  
Sbjct: 190 CRIWDTASGQCLKTLIDDDNPP--VSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTY 247
Query: 185 DKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIK 227
                 K  I +      G   ++GS D    +W+ +T E+++
Sbjct: 248 TGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQ 290

>pdb|2H9L|A Chain A, Wdr5delta23 Length = 329

Iteration: 1
 Score = 46.6 bits (109), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 39/162 (24%), Positives = 71/162 (43%), Gaps = 18/162 (11%)
Query: 140 LILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAK 199
             L G    ++   + P    + S+  D +++IW    GK  K     +GHK  I+ +A 
Sbjct: 34  FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTI---SGHKLGISDVAW 90
Query: 200 AADGSHFLTGSLDKSAKLWDARTLELIKTYV-TERPVNAVTMSPLLDHVVLGGGQDASAV 258
           ++D +  ++ S DK+ K+WD  + + +KT       V     +P  + +V G   +  +V
Sbjct: 91  SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDE--SV 148
Query: 259 TTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDG 300
              D + GK             +  +  H  P++A+ FN DG
Sbjct: 149 RIWDVKTGKC------------LKTLPAHSDPVSAVHFNRDG 178

>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 308

Iteration: 1
 Score = 83.6 bits (205), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 57/223 (25%), Positives = 109/223 (48%), Gaps = 11/223 (4%)
Query: 6   MKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSM 65
           + GH+  ++ + ++ D +LL S + D T  +W   +G+ L T +GH+  V+CC+ +  S 
Sbjct: 57  ISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSN 116
Query: 66  TLITGSADQTAKLWNVETGAQLFTFNFDS-PARSVDFAVGDKLAVITTDPFMELNSAIHV 124
            +++GS D++ ++W+V+TG  L T    S P  +V F     L V +        S   +
Sbjct: 117 LIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSS--------SYDGL 168
Query: 125 KRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKES 184
            RI    + Q  ++++    P   ++   + P  + I++A  D  +++WD   GK LK  
Sbjct: 169 CRIWDTASGQCLKTLIDDDNPP--VSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTY 226
Query: 185 DKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIK 227
                 K  I +      G   ++GS D    +W+ +T E+++
Sbjct: 227 TGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQ 269

>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 308

Iteration: 1
 Score = 46.6 bits (109), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 39/160 (24%), Positives = 71/160 (44%), Gaps = 18/160 (11%)
Query: 142 LKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAA 201
           L G    ++   + P    + S+  D +++IW    GK  K     +GHK  I+ +A ++
Sbjct: 15  LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTI---SGHKLGISDVAWSS 71
Query: 202 DGSHFLTGSLDKSAKLWDARTLELIKTYV-TERPVNAVTMSPLLDHVVLGGGQDASAVTT 260
           D +  ++ S DK+ K+WD  + + +KT       V     +P  + +V G   +  +V  
Sbjct: 72  DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDE--SVRI 129
Query: 261 TDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDG 300
            D + GK             +  +  H  P++A+ FN DG
Sbjct: 130 WDVKTGKC------------LKTLPAHSDPVSAVHFNRDG 157

>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With Compound Length = 312

Iteration: 1
 Score = 83.6 bits (205), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 57/223 (25%), Positives = 109/223 (48%), Gaps = 11/223 (4%)
Query: 6   MKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSM 65
           + GH+  ++ + ++ D +LL S + D T  +W   +G+ L T +GH+  V+CC+ +  S 
Sbjct: 61  ISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSN 120
Query: 66  TLITGSADQTAKLWNVETGAQLFTFNFDS-PARSVDFAVGDKLAVITTDPFMELNSAIHV 124
            +++GS D++ ++W+V+TG  L T    S P  +V F     L V +        S   +
Sbjct: 121 LIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSS--------SYDGL 172
Query: 125 KRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKES 184
            RI    + Q  ++++    P   ++   + P  + I++A  D  +++WD   GK LK  
Sbjct: 173 CRIWDTASGQCLKTLIDDDNPP--VSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTY 230
Query: 185 DKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIK 227
                 K  I +      G   ++GS D    +W+ +T E+++
Sbjct: 231 TGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQ 273

>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With Compound Length = 312

Iteration: 1
 Score = 46.6 bits (109), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 39/162 (24%), Positives = 71/162 (43%), Gaps = 18/162 (11%)
Query: 140 LILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAK 199
             L G    ++   + P    + S+  D +++IW    GK  K     +GHK  I+ +A 
Sbjct: 17  FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTI---SGHKLGISDVAW 73
Query: 200 AADGSHFLTGSLDKSAKLWDARTLELIKTYV-TERPVNAVTMSPLLDHVVLGGGQDASAV 258
           ++D +  ++ S DK+ K+WD  + + +KT       V     +P  + +V G   +  +V
Sbjct: 74  SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDE--SV 131
Query: 259 TTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDG 300
              D + GK             +  +  H  P++A+ FN DG
Sbjct: 132 RIWDVKTGKC------------LKTLPAHSDPVSAVHFNRDG 161

>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase Activity By A Histone H3 Based Peptide Mimetic Length = 318

Iteration: 1
 Score = 83.2 bits (204), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 59/228 (25%), Positives = 104/228 (45%), Gaps = 54/228 (23%)
Query: 6   MKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSM 65
           + GH+  ++ + ++ D +LL S + D T  +W   +G+ L T +GH+  V+CC+ +  S 
Sbjct: 67  ISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSN 126
Query: 66  TLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVK 125
            +++GS D++ ++W+V+TG  L T     PA S              DP     SA+H  
Sbjct: 127 LIVSGSFDESVRIWDVKTGKCLKTL----PAHS--------------DPV----SAVHFN 164
Query: 126 RIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESD 185
           R                    G +           I+S+  D + RIWDT +G+ LK   
Sbjct: 165 R-------------------DGSL-----------IVSSSYDGLCRIWDTASGQCLKTLI 194
Query: 186 KETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTER 233
            +      ++ +  + +G + L  +LD + KLWD    + +KTY   +
Sbjct: 195 DD--DNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHK 240

>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase Activity By A Histone H3 Based Peptide Mimetic Length = 318

Iteration: 1
 Score = 46.6 bits (109), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 39/162 (24%), Positives = 71/162 (43%), Gaps = 18/162 (11%)
Query: 140 LILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAK 199
             L G    ++   + P    + S+  D +++IW    GK  K     +GHK  I+ +A 
Sbjct: 23  FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTI---SGHKLGISDVAW 79
Query: 200 AADGSHFLTGSLDKSAKLWDARTLELIKTYV-TERPVNAVTMSPLLDHVVLGGGQDASAV 258
           ++D +  ++ S DK+ K+WD  + + +KT       V     +P  + +V G   +  +V
Sbjct: 80  SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDE--SV 137
Query: 259 TTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDG 300
              D + GK             +  +  H  P++A+ FN DG
Sbjct: 138 RIWDVKTGKC------------LKTLPAHSDPVSAVHFNRDG 167

>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length = 317

Iteration: 1
 Score = 83.2 bits (204), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 57/223 (25%), Positives = 109/223 (48%), Gaps = 11/223 (4%)
Query: 6   MKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSM 65
           + GH+  ++ + ++ D +LL S + D T  +W   +G+ L T +GH+  V+CC+ +  S 
Sbjct: 66  ISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSN 125
Query: 66  TLITGSADQTAKLWNVETGAQLFTFNFDS-PARSVDFAVGDKLAVITTDPFMELNSAIHV 124
            +++GS D++ ++W+V+TG  L T    S P  +V F     L V +        S   +
Sbjct: 126 LIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSS--------SYDGL 177
Query: 125 KRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKES 184
            RI    + Q  ++++    P   ++   + P  + I++A  D  +++WD   GK LK  
Sbjct: 178 CRIWDTASGQCLKTLIDDDNPP--VSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTY 235
Query: 185 DKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIK 227
                 K  I +      G   ++GS D    +W+ +T E+++
Sbjct: 236 TGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQ 278

>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length = 317

Iteration: 1
 Score = 46.6 bits (109), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 39/162 (24%), Positives = 71/162 (43%), Gaps = 18/162 (11%)
Query: 140 LILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAK 199
             L G    ++   + P    + S+  D +++IW    GK  K     +GHK  I+ +A 
Sbjct: 22  FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTI---SGHKLGISDVAW 78
Query: 200 AADGSHFLTGSLDKSAKLWDARTLELIKTYV-TERPVNAVTMSPLLDHVVLGGGQDASAV 258
           ++D +  ++ S DK+ K+WD  + + +KT       V     +P  + +V G   +  +V
Sbjct: 79  SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDE--SV 136
Query: 259 TTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDG 300
              D + GK             +  +  H  P++A+ FN DG
Sbjct: 137 RIWDVKTGKC------------LKTLPAHSDPVSAVHFNRDG 166

>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide Length = 313

Iteration: 1
 Score = 83.2 bits (204), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 57/223 (25%), Positives = 109/223 (48%), Gaps = 11/223 (4%)
Query: 6   MKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSM 65
           + GH+  ++ + ++ D +LL S + D T  +W   +G+ L T +GH+  V+CC+ +  S 
Sbjct: 62  ISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSN 121
Query: 66  TLITGSADQTAKLWNVETGAQLFTFNFDS-PARSVDFAVGDKLAVITTDPFMELNSAIHV 124
            +++GS D++ ++W+V+TG  L T    S P  +V F     L V +        S   +
Sbjct: 122 LIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSS--------SYDGL 173
Query: 125 KRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKES 184
            RI    + Q  ++++    P   ++   + P  + I++A  D  +++WD   GK LK  
Sbjct: 174 CRIWDTASGQCLKTLIDDDNPP--VSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTY 231
Query: 185 DKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIK 227
                 K  I +      G   ++GS D    +W+ +T E+++
Sbjct: 232 TGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQ 274

>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide Length = 313

Iteration: 1
 Score = 46.6 bits (109), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 39/162 (24%), Positives = 71/162 (43%), Gaps = 18/162 (11%)
Query: 140 LILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAK 199
             L G    ++   + P    + S+  D +++IW    GK  K     +GHK  I+ +A 
Sbjct: 18  FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTI---SGHKLGISDVAW 74
Query: 200 AADGSHFLTGSLDKSAKLWDARTLELIKTYV-TERPVNAVTMSPLLDHVVLGGGQDASAV 258
           ++D +  ++ S DK+ K+WD  + + +KT       V     +P  + +V G   +  +V
Sbjct: 75  SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDE--SV 132
Query: 259 TTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDG 300
              D + GK             +  +  H  P++A+ FN DG
Sbjct: 133 RIWDVKTGKC------------LKTLPAHSDPVSAVHFNRDG 162

>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module Of The Mll1 Complex Length = 312

Iteration: 1
 Score = 83.2 bits (204), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 57/223 (25%), Positives = 109/223 (48%), Gaps = 11/223 (4%)
Query: 6   MKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSM 65
           + GH+  ++ + ++ D +LL S + D T  +W   +G+ L T +GH+  V+CC+ +  S 
Sbjct: 61  ISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSN 120
Query: 66  TLITGSADQTAKLWNVETGAQLFTFNFDS-PARSVDFAVGDKLAVITTDPFMELNSAIHV 124
            +++GS D++ ++W+V+TG  L T    S P  +V F     L V +        S   +
Sbjct: 121 LIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSS--------SYDGL 172
Query: 125 KRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKES 184
            RI    + Q  ++++    P   ++   + P  + I++A  D  +++WD   GK LK  
Sbjct: 173 CRIWDTASGQCLKTLIDDDNPP--VSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTY 230
Query: 185 DKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIK 227
                 K  I +      G   ++GS D    +W+ +T E+++
Sbjct: 231 TGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQ 273

>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module Of The Mll1 Complex Length = 312

Iteration: 1
 Score = 46.6 bits (109), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 39/162 (24%), Positives = 71/162 (43%), Gaps = 18/162 (11%)
Query: 140 LILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAK 199
             L G    ++   + P    + S+  D +++IW    GK  K     +GHK  I+ +A 
Sbjct: 17  FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTI---SGHKLGISDVAW 73
Query: 200 AADGSHFLTGSLDKSAKLWDARTLELIKTYV-TERPVNAVTMSPLLDHVVLGGGQDASAV 258
           ++D +  ++ S DK+ K+WD  + + +KT       V     +P  + +V G   +  +V
Sbjct: 74  SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDE--SV 131
Query: 259 TTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDG 300
              D + GK             +  +  H  P++A+ FN DG
Sbjct: 132 RIWDVKTGKC------------LKTLPAHSDPVSAVHFNRDG 161

>pdb|2GNQ|A Chain A, Structure Of Wdr5 Length = 336

Iteration: 1
 Score = 83.2 bits (204), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 59/228 (25%), Positives = 104/228 (45%), Gaps = 54/228 (23%)
Query: 6   MKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSM 65
           + GH+  ++ + ++ D +LL S + D T  +W   +G+ L T +GH+  V+CC+ +  S 
Sbjct: 85  ISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSN 144
Query: 66  TLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVK 125
            +++GS D++ ++W+V+TG  L T     PA S              DP     SA+H  
Sbjct: 145 LIVSGSFDESVRIWDVKTGKCLKTL----PAHS--------------DPV----SAVHFN 182
Query: 126 RIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESD 185
           R                    G +           I+S+  D + RIWDT +G+ LK   
Sbjct: 183 R-------------------DGSL-----------IVSSSYDGLCRIWDTASGQCLKTLI 212
Query: 186 KETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTER 233
            +      ++ +  + +G + L  +LD + KLWD    + +KTY   +
Sbjct: 213 DD--DNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHK 258

>pdb|2GNQ|A Chain A, Structure Of Wdr5 Length = 336

Iteration: 1
 Score = 46.2 bits (108), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 39/162 (24%), Positives = 71/162 (43%), Gaps = 18/162 (11%)
Query: 140 LILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAK 199
             L G    ++   + P    + S+  D +++IW    GK  K     +GHK  I+ +A 
Sbjct: 41  FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTI---SGHKLGISDVAW 97
Query: 200 AADGSHFLTGSLDKSAKLWDARTLELIKTYV-TERPVNAVTMSPLLDHVVLGGGQDASAV 258
           ++D +  ++ S DK+ K+WD  + + +KT       V     +P  + +V G   +  +V
Sbjct: 98  SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDE--SV 155
Query: 259 TTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDG 300
              D + GK             +  +  H  P++A+ FN DG
Sbjct: 156 RIWDVKTGKC------------LKTLPAHSDPVSAVHFNRDG 185

>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel Site Length = 334

Iteration: 1
 Score = 83.2 bits (204), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 59/228 (25%), Positives = 104/228 (45%), Gaps = 54/228 (23%)
Query: 6   MKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSM 65
           + GH+  ++ + ++ D +LL S + D T  +W   +G+ L T +GH+  V+CC+ +  S 
Sbjct: 83  ISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSN 142
Query: 66  TLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVK 125
            +++GS D++ ++W+V+TG  L T     PA S              DP     SA+H  
Sbjct: 143 LIVSGSFDESVRIWDVKTGKCLKTL----PAHS--------------DPV----SAVHFN 180
Query: 126 RIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESD 185
           R                    G +           I+S+  D + RIWDT +G+ LK   
Sbjct: 181 R-------------------DGSL-----------IVSSSYDGLCRIWDTASGQCLKTLI 210
Query: 186 KETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTER 233
            +      ++ +  + +G + L  +LD + KLWD    + +KTY   +
Sbjct: 211 DDDN--PPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHK 256

>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel Site Length = 334

Iteration: 1
 Score = 46.6 bits (109), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 39/162 (24%), Positives = 71/162 (43%), Gaps = 18/162 (11%)
Query: 140 LILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAK 199
             L G    ++   + P    + S+  D +++IW    GK  K     +GHK  I+ +A 
Sbjct: 39  FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTI---SGHKLGISDVAW 95
Query: 200 AADGSHFLTGSLDKSAKLWDARTLELIKTYV-TERPVNAVTMSPLLDHVVLGGGQDASAV 258
           ++D +  ++ S DK+ K+WD  + + +KT       V     +P  + +V G   +  +V
Sbjct: 96  SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDE--SV 153
Query: 259 TTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDG 300
              D + GK             +  +  H  P++A+ FN DG
Sbjct: 154 RIWDVKTGKC------------LKTLPAHSDPVSAVHFNRDG 183

>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom Length = 315

Iteration: 1
 Score = 82.8 bits (203), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 57/223 (25%), Positives = 109/223 (48%), Gaps = 11/223 (4%)
Query: 6   MKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSM 65
           + GH+  ++ + ++ D +LL S + D T  +W   +G+ L T +GH+  V+CC+ +  S 
Sbjct: 64  ISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSN 123
Query: 66  TLITGSADQTAKLWNVETGAQLFTFNFDS-PARSVDFAVGDKLAVITTDPFMELNSAIHV 124
            +++GS D++ ++W+V+TG  L T    S P  +V F     L V +        S   +
Sbjct: 124 LIVSGSFDESVRIWDVKTGMCLKTLPAHSDPVSAVHFNRDGSLIVSS--------SYDGL 175
Query: 125 KRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKES 184
            RI    + Q  ++++    P   ++   + P  + I++A  D  +++WD   GK LK  
Sbjct: 176 CRIWDTASGQCLKTLIDDDNPP--VSFVKFSPNGKYILAATLDNDLKLWDYSKGKCLKTY 233
Query: 185 DKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIK 227
                 K  I +      G   ++GS D    +W+ +T E+++
Sbjct: 234 TGHKNEKYCIFANFSVTGGKWIVSGSEDNMVYIWNLQTKEIVQ 276

>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom Length = 315

Iteration: 1
 Score = 45.1 bits (105), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 36/163 (22%), Positives = 70/163 (42%), Gaps = 18/163 (11%)
Query: 139 VLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLA 198
           +  L G    ++   + P    + S+  D +++IW    GK  K     +GHK  I+ +A
Sbjct: 19  MFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTI---SGHKLGISDVA 75
Query: 199 KAADGSHFLTGSLDKSAKLWDARTLELIKTYV-TERPVNAVTMSPLLDHVVLGGGQDASA 257
            ++D +  ++ S DK+ K+WD  + + +KT       V     +P  + +V G   ++  
Sbjct: 76  WSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDES-- 133
Query: 258 VTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDG 300
                        + +D      +  +  H  P++A+ FN DG
Sbjct: 134 ------------VRIWDVKTGMCLKTLPAHSDPVSAVHFNRDG 164

>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length Murine Apaf-1 Length = 1256

Iteration: 1
 Score = 70.9 bits (172), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 65/316 (20%), Positives = 120/316 (37%), Gaps = 43/316 (13%)
Query: 4   ILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRD 63
           ++++ H   + +  +++DG  + SC  D T  V+ A+ GE+L   + H   V CC  S D
Sbjct: 616 LVVRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSD 675
Query: 64  SMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDK----LAVITTDPFMELN 119
              + T SAD+  K+W+  TG  + T++  S   +            LA  + D F++L 
Sbjct: 676 DSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKL- 734
Query: 120 SAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGK 179
                     D   +   + +   G    +N   + P +  + S   D  +R+WD  +  
Sbjct: 735 ---------WDLNQKECRNTMF--GHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSAN 783
Query: 180 ----------LLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTY 229
                      L   D     +  +   + +ADG   +  + +K   L+D  T  L+   
Sbjct: 784 ERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNK-VLLFDIHTSGLLAEI 842
Query: 230 VT--ERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGH 287
            T     +     SP     V+   Q    +   D R               ++   +GH
Sbjct: 843 HTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRL--------------KVADCRGH 888
Query: 288 FGPINALAFNPDGKRY 303
              ++ + F+PDG  +
Sbjct: 889 LSWVHGVMFSPDGSSF 904

>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length Murine Apaf-1 Length = 1256

Iteration: 1
 Score = 54.3 bits (129), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 41/163 (25%), Positives = 72/163 (44%), Gaps = 16/163 (9%)
Query: 138 SVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSL 197
           S L+++     +  A +    + I S G D  ++++  ETG+ L +      H+  +   
Sbjct: 614 SRLVVRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDI---KAHEDEVLCC 670
Query: 198 AKAADGSHFLTGSLDKSAKLWDARTLELIKTY-VTERPVNAVTMSPLLDHVVLGGGQDAS 256
           A ++D S+  T S DK  K+WD+ T +L+ TY      VN    +   +H++L  G    
Sbjct: 671 AFSSDDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATG---- 726
Query: 257 AVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPD 299
                   +  F  K +D   +E    + GH   +N   F+PD
Sbjct: 727 --------SNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPD 761

>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1 Length = 1249

Iteration: 1
 Score = 70.5 bits (171), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 65/316 (20%), Positives = 120/316 (37%), Gaps = 43/316 (13%)
Query: 4   ILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRD 63
           ++++ H   + +  +++DG  + SC  D T  V+ A+ GE+L   + H   V CC  S D
Sbjct: 609 LVVRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSD 668
Query: 64  SMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDK----LAVITTDPFMELN 119
              + T SAD+  K+W+  TG  + T++  S   +            LA  + D F++L 
Sbjct: 669 DSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKL- 727
Query: 120 SAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGK 179
                     D   +   + +   G    +N   + P +  + S   D  +R+WD  +  
Sbjct: 728 ---------WDLNQKECRNTMF--GHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSAN 776
Query: 180 ----------LLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTY 229
                      L   D     +  +   + +ADG   +  + +K   L+D  T  L+   
Sbjct: 777 ERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNK-VLLFDIHTSGLLAEI 835
Query: 230 VT--ERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGH 287
            T     +     SP     V+   Q    +   D R               ++   +GH
Sbjct: 836 HTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRL--------------KVADCRGH 881
Query: 288 FGPINALAFNPDGKRY 303
              ++ + F+PDG  +
Sbjct: 882 LSWVHGVMFSPDGSSF 897

>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1 Length = 1249

Iteration: 1
 Score = 54.3 bits (129), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 41/163 (25%), Positives = 72/163 (44%), Gaps = 16/163 (9%)
Query: 138 SVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSL 197
           S L+++     +  A +    + I S G D  ++++  ETG+ L +      H+  +   
Sbjct: 607 SRLVVRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDI---KAHEDEVLCC 663
Query: 198 AKAADGSHFLTGSLDKSAKLWDARTLELIKTY-VTERPVNAVTMSPLLDHVVLGGGQDAS 256
           A ++D S+  T S DK  K+WD+ T +L+ TY      VN    +   +H++L  G    
Sbjct: 664 AFSSDDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATG---- 719
Query: 257 AVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPD 299
                   +  F  K +D   +E    + GH   +N   F+PD
Sbjct: 720 --------SNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPD 754

>pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1 Length = 393

Iteration: 1
 Score = 47.4 bits (111), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 48/230 (20%), Positives = 89/230 (38%), Gaps = 58/230 (25%)
Query: 4   ILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRD 63
           ++++GHE+ +  L Y   GD L S + D T  +W    G+   T    +G         D
Sbjct: 159 MILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGD 218
Query: 64  SMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIH 123
              +  GS D+  ++W+ ETG                              F+       
Sbjct: 219 GKYIAAGSLDRAVRVWDSETG------------------------------FL------- 241
Query: 124 VKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKE 183
           V+R+  D  ++ G       G +  +   V+    ++++S   D  V++W+ +      +
Sbjct: 242 VERL--DSENESG------TGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNAN--NK 291
Query: 184 SDKET-----------GHKKTITSLAKAADGSHFLTGSLDKSAKLWDART 222
           SD +T           GHK  + S+A   +  + L+GS D+    WD ++
Sbjct: 292 SDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKS 341

>pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1 Length = 393

Iteration: 1
 Score = 58.9 bits (141), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 59/253 (23%), Positives = 95/253 (37%), Gaps = 48/253 (18%)
Query: 51  HNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVI 110
           H   V C   S D   L TG  ++T +++ V  G+ +   + DS A              
Sbjct: 63  HTSVVCCVKFSNDGEYLATG-CNKTTQVYRVSDGSLVARLSDDSAAN------------- 108
Query: 111 TTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQG--RINRAVWGPLNRTIISAGEDA 168
                             +DP     E++     P     I    + P  + + +  ED 
Sbjct: 109 ------------------KDP-----ENLNTSSSPSSDLYIRSVCFSPDGKFLATGAEDR 145
Query: 169 IVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKT 228
           ++RIWD E  K++       GH++ I SL     G   ++GS D++ ++WD RT +   T
Sbjct: 146 LIRIWDIENRKIVM---ILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLT 202
Query: 229 YVTERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHF 288
              E  V  V +SP     +  G  D +       R    E  F  + L  E     GH 
Sbjct: 203 LSIEDGVTTVAVSPGDGKYIAAGSLDRAV------RVWDSETGFLVERLDSENESGTGHK 256
Query: 289 GPINALAFNPDGK 301
             + ++ F  DG+
Sbjct: 257 DSVYSVVFTRDGQ 269

>pdb|1GXR|A Chain A, Wd40 Region Of Human Groucho/tle1 Length = 337

Iteration: 1
 Score = 68.6 bits (166), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 55/210 (26%), Positives = 91/210 (43%), Gaps = 19/210 (9%)
Query: 12  PLTY-LKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITG 70
           P  Y L  + D  + FSC  D    VW   N   +  ++GH     C D+S D   L TG
Sbjct: 142 PACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTG 201
Query: 71  SADQTAKLWNVETGAQLFTFNFDSPARSVDFA-VGDKLAVITTDPFMELNSAIHVKRIAR 129
             D T + W++  G QL   +F S   S+ +   G+ LAV      +E+   +HV +  +
Sbjct: 202 GLDNTVRSWDLREGRQLQQHDFTSQIFSLGYCPTGEWLAVGMESSNVEV---LHVNKPDK 258
Query: 130 DPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETG 189
                    VL LK          +    +  +S G+D ++  W T  G  + +S + + 
Sbjct: 259 YQLHLHESCVLSLK----------FAYCGKWFVSTGKDNLLNAWRTPYGASIFQSKESS- 307
Query: 190 HKKTITSLAKAADGSHFLTGSLDKSAKLWD 219
              ++ S   + D  + +TGS DK A +++
Sbjct: 308 ---SVLSCDISVDDKYIVTGSGDKKATVYE 334

>pdb|3MKS|B Chain B, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN ALLOSTERIC Inhibitor Scf-I2 Length = 464

Iteration: 1
 Score = 63.2 bits (152), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 66/278 (23%), Positives = 117/278 (42%), Gaps = 26/278 (9%)
Query: 6   MKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDV--SRD 63
           + GH+  +  LKY   G +L S + D T  VW    G     + GHN  V C D+   ++
Sbjct: 158 LSGHDGGVWALKY-AHGGILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKN 216
Query: 64  SMTLITGSADQTAKLWNVETGAQL--------FTFNFDSPARSVDFA---VGDKLAVITT 112
              ++TGS D T  +W +   + +        +   F +P  +  F     G   +V T 
Sbjct: 217 IKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTV 276
Query: 113 DPF--MELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIV 170
                + ++ +     I  D A    + + IL G   RI   ++    +  ISA  D  +
Sbjct: 277 SGHGNIVVSGSYDNTLIVWDVAQM--KCLYILSGHTDRIYSTIYDHERKRCISASMDTTI 334
Query: 171 RIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYV 230
           RIWD E G+L+      T     +  L + +D    ++ + D S + WDA       +Y 
Sbjct: 335 RIWDLENGELMYTLQGHTA----LVGLLRLSD-KFLVSAAADGSIRGWDANDYSRKFSY- 388
Query: 231 TERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKF 268
               ++A+T   + D++++ G ++   +     R+GK 
Sbjct: 389 HHTNLSAITTFYVSDNILVSGSENQFNIYNL--RSGKL 424

>pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The Trypanosoma Brucei Ribosome Length = 318

Iteration: 1
 Score = 62.8 bits (151), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 52/237 (21%), Positives = 95/237 (40%), Gaps = 52/237 (21%)
Query: 6   MKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSM 65
           ++GH   ++ +  + +G+   S + DH+  +W   NG+    + GH   V     S D+ 
Sbjct: 63  LEGHSAFVSDVALSNNGNFAVSASWDHSLRLWNLQNGQCQYKFLGHTKDVLSVAFSPDNR 122
Query: 66  TLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVK 125
            +++G  D   ++WNV+ G  + T +          A  D ++ +   P ++        
Sbjct: 123 QIVSGGRDNALRVWNVK-GECMHTLSRG--------AHTDWVSCVRFSPSLD-------- 165
Query: 126 RIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESD 185
                                         P+   I+S G D +V++WD  TG+L+ +  
Sbjct: 166 -----------------------------APV---IVSGGWDNLVKVWDLATGRLVTD-- 191
Query: 186 KETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTERPVNAVTMSP 242
              GH   +TS+  + DGS   +   D  A+LWD    E +       P+N +  SP
Sbjct: 192 -LKGHTNYVTSVTVSPDGSLCASSDKDGVARLWDLTKGEALSEMAAGAPINQICFSP 247

>pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The Trypanosoma Brucei Ribosome Length = 318

Iteration: 1
 Score = 44.7 bits (104), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 34/143 (23%), Positives = 62/143 (43%), Gaps = 19/143 (13%)
Query: 162 ISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDAR 221
           +SA  D  +R+W+ + G+      K  GH K + S+A + D    ++G  D + ++W+ +
Sbjct: 83  VSASWDHSLRLWNLQNGQCQY---KFLGHTKDVLSVAFSPDNRQIVSGGRDNALRVWNVK 139
Query: 222 --TLELIKTYVTERPVNAVTMSPLLDH-VVLGGGQDASAVTTTDHRAGKFEAKFFDKILQ 278
              +  +        V+ V  SP LD  V++ GG D                K +D    
Sbjct: 140 GECMHTLSRGAHTDWVSCVRFSPSLDAPVIVSGGWDN-------------LVKVWDLATG 186
Query: 279 EEIGGVKGHFGPINALAFNPDGK 301
             +  +KGH   + ++  +PDG 
Sbjct: 187 RLVTDLKGHTNYVTSVTVSPDGS 209

>pdb|1NEX|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex Length = 464

Iteration: 1
 Score = 62.4 bits (150), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 66/278 (23%), Positives = 116/278 (41%), Gaps = 26/278 (9%)
Query: 6   MKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDV--SRD 63
           + GH+  +  LKY   G +L S + D T  VW    G     + GHN  V C D+   ++
Sbjct: 158 LSGHDGGVWALKY-AHGGILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKN 216
Query: 64  SMTLITGSADQTAKLWNVETGAQL--------FTFNFDSPARSVDFA---VGDKLAVITT 112
              ++TGS D T  +W +   + +        +   F +P  +  F     G   +V T 
Sbjct: 217 IKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHXASVRTV 276
Query: 113 DPF--MELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIV 170
                + ++ +     I  D A    + + IL G   RI   ++    +  ISA  D  +
Sbjct: 277 SGHGNIVVSGSYDNTLIVWDVAQX--KCLYILSGHTDRIYSTIYDHERKRCISASXDTTI 334
Query: 171 RIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYV 230
           RIWD E G+L       T     +  L + +D    ++ + D S + WDA       +Y 
Sbjct: 335 RIWDLENGELXYTLQGHTA----LVGLLRLSD-KFLVSAAADGSIRGWDANDYSRKFSY- 388
Query: 231 TERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKF 268
               ++A+T   + D++++ G ++   +     R+GK 
Sbjct: 389 HHTNLSAITTFYVSDNILVSGSENQFNIYNL--RSGKL 424

>pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410

Iteration: 1
 Score = 62.0 bits (149), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 52/228 (22%), Positives = 99/228 (43%), Gaps = 17/228 (7%)
Query: 6   MKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSM 65
           M GH+  ++ +    +GD + S ++D T  +W    G  + T+ GH   V     ++D  
Sbjct: 188 MHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGT 247
Query: 66  TLITGSADQTAKLWNVETG------------AQLFTFNFDSPARSVDFAVGDKLAVITTD 113
            + + S DQT ++W V T              +  ++  +S   S+  A G +    +  
Sbjct: 248 LIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKK-SGK 306
Query: 114 PFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIW 173
           P   L S    K I       G   ++ L G    +   ++    + I+S  +D  +R+W
Sbjct: 307 PGPFLLSGSRDKTIKMWDVSTGM-CLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVW 365
Query: 174 DTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDAR 221
           D +  + +K  +    H+  +TSL       + +TGS+D++ K+W+ R
Sbjct: 366 DYKNKRCMKTLN---AHEHFVTSLDFHKTAPYVVTGSVDQTVKVWECR 410

>pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410

Iteration: 1
 Score = 50.1 bits (118), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 31/131 (23%), Positives = 55/131 (41%), Gaps = 39/131 (29%)
Query: 142 LKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETG----------------------K 179
           L G +  + R ++ P+   ++SA EDA +++WD ETG                      K
Sbjct: 104 LSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGK 163
Query: 180 LLKESDKET-----------------GHKKTITSLAKAADGSHFLTGSLDKSAKLWDART 222
           LL     +                  GH   ++S++   +G H ++ S DK+ K+W+ +T
Sbjct: 164 LLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQT 223
Query: 223 LELIKTYVTER 233
              +KT+   R
Sbjct: 224 GYCVKTFTGHR 234

>pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex: Destruction Motif Binding And Lysine Specificity On The Scfbeta-Trcp1 Ubiquitin Ligase Length = 435

Iteration: 1
 Score = 50.1 bits (118), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 56/242 (23%), Positives = 101/242 (41%), Gaps = 25/242 (10%)
Query: 5   LMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDS 64
           ++ GH   +  L+Y  D  ++ + + D T  VW  + GE L T   H  AV    +  ++
Sbjct: 168 ILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAV--LHLRFNN 223
Query: 65  MTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHV 124
             ++T S D++  +W++ +         D   R V   VG + AV   D   +   +   
Sbjct: 224 GMMVTCSKDRSIAVWDMASPT-------DITLRRV--LVGHRAAVNVVDFDDKYIVSASG 274
Query: 125 KRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKES 184
            R  +       E V  L G +  I  A     +R ++S   D  +R+WD E G  L+  
Sbjct: 275 DRTIKVWNTSTCEFVRTLNGHKRGI--ACLQYRDRLVVSGSSDNTIRLWDIECGACLRVL 332
Query: 185 DKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTERPVNAVTMSPLL 244
           +   GH++ +  +    D    ++G+ D   K+WD     L+       P   + +  L+
Sbjct: 333 E---GHEELVRCI--RFDNKRIVSGAYDGKIKVWD-----LVAALDPRAPAGTLCLRTLV 382
Query: 245 DH 246
           +H
Sbjct: 383 EH 384

>pdb|2PBI|B Chain B, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS CRYSTAL Structure Length = 354

Iteration: 1
 Score = 58.5 bits (140), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 49/214 (22%), Positives = 95/214 (44%), Gaps = 17/214 (7%)
Query: 9   HERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDV--SRDSMT 66
           H   L+   +      + + + D T  +W  ++G+ L ++ GH   V C D+  S    T
Sbjct: 153 HTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNT 212
Query: 67  LITGSADQTAKLWNVETGAQLFTFN-FDSPARSVD-FAVGDKLAVITTDPFMELNSAIHV 124
            ++G  D+ A +W++ +G  +  F   +S   SV  +  GD  A  + D    L    + 
Sbjct: 213 FVSGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRL----YD 268
Query: 125 KRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKES 184
            R  R+ A    ES++        ++ ++ G   R + +   D  + +WD   G  +   
Sbjct: 269 LRADREVAIYSKESIIF---GASSVDFSLSG---RLLFAGYNDYTINVWDVLKGSRVS-- 320
Query: 185 DKETGHKKTITSLAKAADGSHFLTGSLDKSAKLW 218
               GH+  +++L  + DG+ F +GS D + ++W
Sbjct: 321 -ILFGHENRVSTLRVSPDGTAFCSGSWDHTLRVW 353

>pdb|2PBI|B Chain B, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS CRYSTAL Structure Length = 354

Iteration: 1
 Score = 42.0 bits (97), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 51/254 (20%), Positives = 88/254 (34%), Gaps = 66/254 (25%)
Query: 51  HNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVI 110
           H   +  C  +   M ++T S D T  LW+VE+G  L +F+            G    V+
Sbjct: 153 HTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQSFH------------GHGADVL 200
Query: 111 TTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIV 170
             D                 P++ G                        T +S G D   
Sbjct: 201 CLDLA---------------PSETG-----------------------NTFVSGGCDKKA 222
Query: 171 RIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYV 230
            +WD  +G+ ++  +    H+  + S+     G  F +GS D + +L+D R    +  Y 
Sbjct: 223 MVWDMRSGQCVQAFET---HESDVNSVRYYPSGDAFASGSDDATCRLYDLRADREVAIYS 279
Query: 231 TERPV-NAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFG 289
            E  +  A ++   L   +L  G +   +   D   G   +  F            GH  
Sbjct: 280 KESIIFGASSVDFSLSGRLLFAGYNDYTINVWDVLKGSRVSILF------------GHEN 327
Query: 290 PINALAFNPDGKRY 303
            ++ L  +PDG  +
Sbjct: 328 RVSTLRVSPDGTAF 341

>pdb|3RFH|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group P21 Length = 319

Iteration: 1
 Score = 57.4 bits (137), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 74/310 (23%), Positives = 133/310 (42%), Gaps = 37/310 (11%)
Query: 6   MKGHERPLTYLKYNK-DGDLLFSCAKDHTPTVW-FADNGERLG----TYRGHNGAVWCCD 59
           ++GH   +T L  +    +LL S ++D T   W    + ++ G    +++GH+  V  C 
Sbjct: 13  LEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCT 72
Query: 60  VSRDSMTLITGSADQTAKLWNVETGAQLFTF-NFDSPARSVDFAVGDKLAVITTDPFMEL 118
           ++ D    ++ S D+T +LW+V TG     F    S   SVD  +  K ++I +      
Sbjct: 73  LTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVD--IDKKASMIISG---SR 127
Query: 119 NSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNR------TIISAGEDAIVRI 172
           +  I V  I        G+ +  L G    +++    P  +      TIISAG D +V+ 
Sbjct: 128 DKTIKVWTIK-------GQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKA 180
Query: 173 WDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTE 232
           W+    ++  E+D   GH   I +L  + DG+   +   D    LW+    + + T   +
Sbjct: 181 WNLNQFQI--EAD-FIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQ 237
Query: 233 RPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGP-I 291
             V ++  SP  +   L      +A T T  +    + ++    L+ E  G      P  
Sbjct: 238 DEVFSLAFSP--NRYWL------AAATATGIKVFSLDPQYLVDDLRPEFAGYSAAAEPHA 289
Query: 292 NALAFNPDGK 301
            +LA++ DG+
Sbjct: 290 VSLAWSADGQ 299

>pdb|3IZ6|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s Ribosome Length = 380

Iteration: 1
 Score = 56.2 bits (134), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 59/229 (25%), Positives = 98/229 (42%), Gaps = 17/229 (7%)
Query: 47  TYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFNFDSP-ARSVDFAV-G 104
           T +GH+G V+  D + +   +++ S D    +WN  T  +        P      FA  G
Sbjct: 61  TLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKLHCPWVMECAFAPNG 120
Query: 105 DKLAVITTDPFMELNSAIHVKRIARDPADQGGESV-LILKGPQGRINRAVWGPLNRT-II 162
             +A         L+SA  +  ++      G   V  +L G +G  +   + P   T +I
Sbjct: 121 QSVAC------GGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLI 174
Query: 163 SAGEDAIVRIWDTETGKLLK--ESDKETGHKKTITSLA-KAADGSHFLTGSLDKSAKLWD 219
           +   D    +WD  TG+ +    S+  +GH   + SL+  + + + F++GS D + +LWD
Sbjct: 175 TGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDTTVRLWD 234
Query: 220 AR-TLELIKTYV-TERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAG 266
            R T   ++TY   E  +N+V   P  D    G G D       D R G
Sbjct: 235 LRITSRAVRTYHGHEGDINSVKFFP--DGQRFGTGSDDGTCRLFDMRTG 281

>pdb|1TRJ|A Chain A, Homology Model Of Yeast Rack1 Protein Fitted Into 11.7a Cryo-em Map Of Yeast 80s Ribosome Length = 314

Iteration: 1
 Score = 56.6 bits (135), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 74/310 (23%), Positives = 133/310 (42%), Gaps = 37/310 (11%)
Query: 6   MKGHERPLTYLKYNK-DGDLLFSCAKDHTPTVW-FADNGERLG----TYRGHNGAVWCCD 59
           ++GH   +T L  +    +LL S ++D T   W    + ++ G    +++GH+  V  C 
Sbjct: 13  LEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCT 72
Query: 60  VSRDSMTLITGSADQTAKLWNVETGAQLFTF-NFDSPARSVDFAVGDKLAVITTDPFMEL 118
           ++ D    ++ S D+T +LW+V TG     F    S   SVD  +  K ++I +      
Sbjct: 73  LTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVD--IDKKASMIISG---SR 127
Query: 119 NSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNR------TIISAGEDAIVRI 172
           +  I V  I        G+ +  L G    +++    P  +      TIISAG D +V+ 
Sbjct: 128 DKTIKVWTIK-------GQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKA 180
Query: 173 WDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTE 232
           W+    ++  E+D   GH   I +L  + DG+   +   D    LW+    + + T   +
Sbjct: 181 WNLNQFQI--EAD-FIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQ 237
Query: 233 RPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGP-I 291
             V ++  SP  +   L      +A T T  +    + ++    L+ E  G      P  
Sbjct: 238 DEVFSLAFSP--NRYWL------AAATATGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHA 289
Query: 292 NALAFNPDGK 301
            +LA++ DG+
Sbjct: 290 VSLAWSADGQ 299

>pdb|3IZB|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae Translating 80s Ribosome Length = 319

Iteration: 1
 Score = 56.6 bits (135), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 74/310 (23%), Positives = 133/310 (42%), Gaps = 37/310 (11%)
Query: 6   MKGHERPLTYLKYNK-DGDLLFSCAKDHTPTVW-FADNGERLG----TYRGHNGAVWCCD 59
           ++GH   +T L  +    +LL S ++D T   W    + ++ G    +++GH+  V  C 
Sbjct: 13  LEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCT 72
Query: 60  VSRDSMTLITGSADQTAKLWNVETGAQLFTF-NFDSPARSVDFAVGDKLAVITTDPFMEL 118
           ++ D    ++ S D+T +LW+V TG     F    S   SVD  +  K ++I +      
Sbjct: 73  LTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVD--IDKKASMIISG---SR 127
Query: 119 NSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNR------TIISAGEDAIVRI 172
           +  I V  I        G+ +  L G    +++    P  +      TIISAG D +V+ 
Sbjct: 128 DKTIKVWTIK-------GQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKA 180
Query: 173 WDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTE 232
           W+    ++  E+D   GH   I +L  + DG+   +   D    LW+    + + T   +
Sbjct: 181 WNLNQFQI--EAD-FIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQ 237
Query: 233 RPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGP-I 291
             V ++  SP  +   L      +A T T  +    + ++    L+ E  G      P  
Sbjct: 238 DEVFSLAFSP--NRYWL------AAATATGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHA 289
Query: 292 NALAFNPDGK 301
            +LA++ DG+
Sbjct: 290 VSLAWSADGQ 299

>pdb|3JYV|R Chain R, Structure Of The 40s Rrna And Proteins And PE TRNA FOR EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces Lanuginosus Ribosome At 8.9a Resolution Length = 313

Iteration: 1
 Score = 56.6 bits (135), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 74/310 (23%), Positives = 133/310 (42%), Gaps = 37/310 (11%)
Query: 6   MKGHERPLTYLKYNK-DGDLLFSCAKDHTPTVW-FADNGERLG----TYRGHNGAVWCCD 59
           ++GH   +T L  +    +LL S ++D T   W    + ++ G    +++GH+  V  C 
Sbjct: 7   LEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCT 66
Query: 60  VSRDSMTLITGSADQTAKLWNVETGAQLFTF-NFDSPARSVDFAVGDKLAVITTDPFMEL 118
           ++ D    ++ S D+T +LW+V TG     F    S   SVD  +  K ++I +      
Sbjct: 67  LTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVD--IDKKASMIISG---SR 121
Query: 119 NSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNR------TIISAGEDAIVRI 172
           +  I V  I        G+ +  L G    +++    P  +      TIISAG D +V+ 
Sbjct: 122 DKTIKVWTIK-------GQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKA 174
Query: 173 WDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTE 232
           W+    ++  E+D   GH   I +L  + DG+   +   D    LW+    + + T   +
Sbjct: 175 WNLNQFQI--EAD-FIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQ 231
Query: 233 RPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGP-I 291
             V ++  SP  +   L      +A T T  +    + ++    L+ E  G      P  
Sbjct: 232 DEVFSLAFSP--NRYWL------AAATATGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHA 283
Query: 292 NALAFNPDGK 301
            +LA++ DG+
Sbjct: 284 VSLAWSADGQ 293

>pdb|3RFG|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group P63 Length = 319

Iteration: 1
 Score = 56.2 bits (134), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 74/310 (23%), Positives = 133/310 (42%), Gaps = 37/310 (11%)
Query: 6   MKGHERPLTYLKYNK-DGDLLFSCAKDHTPTVW-FADNGERLG----TYRGHNGAVWCCD 59
           ++GH   +T L  +    +LL S ++D T   W    + ++ G    +++GH+  V  C 
Sbjct: 13  LEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCT 72
Query: 60  VSRDSMTLITGSADQTAKLWNVETGAQLFTF-NFDSPARSVDFAVGDKLAVITTDPFMEL 118
           ++ D    ++ S D+T +LW+V TG     F    S   SVD  +  K ++I +      
Sbjct: 73  LTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVD--IDKKASMIISG---SR 127
Query: 119 NSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNR------TIISAGEDAIVRI 172
           +  I V  I        G+ +  L G    +++    P  +      TIISAG D +V+ 
Sbjct: 128 DKTIKVWTIK-------GQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKA 180
Query: 173 WDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTE 232
           W+    ++  E+D   GH   I +L  + DG+   +   D    LW+    + + T   +
Sbjct: 181 WNLNQFQI--EAD-FIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQ 237
Query: 233 RPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGP-I 291
             V ++  SP  +   L      +A T T  +    + ++    L+ E  G      P  
Sbjct: 238 DEVFSLAFSP--NRYWL------AAATATGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHA 289
Query: 292 NALAFNPDGK 301
            +LA++ DG+
Sbjct: 290 VSLAWSADGQ 299

>pdb|2XZM|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit In Complex With Initiation Factor 1. This File Contains The 40s Subunit And Initiation Factor For Molecule 1 Length = 343

Iteration: 1
 Score = 54.3 bits (129), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 69/316 (21%), Positives = 123/316 (38%), Gaps = 26/316 (8%)
Query: 5   LMKGHERPLTYL------KYNKDGDLLFSCAKDHTPTVWFADNGERLGTY-------RGH 51
           +++GH   +T +      K N+D  +L S ++D T  +W     E+ G +        GH
Sbjct: 16  ILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGH 75
Query: 52  NGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTF-NFDSPARSVDFAVGDKLAVI 110
           N  V    +S+++   I+ S D+T +LW++ TG     F    S   SV F+  D   ++
Sbjct: 76  NHFVSDLALSQENCFAISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFS-PDNRQIL 134
Query: 111 TTDPFMEL---NSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGED 167
           +     E+   N     K  + +  +       +   P  +    V  P      S G D
Sbjct: 135 SAGAEREIKLWNILGECKFSSAEKENHSDWVSCVRYSPIMKSANKV-QPFAPYFASVGWD 193
Query: 168 AIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLEL-I 226
             +++W+T      +       H+  +  L+ + +G +  TG  DK   +WD   L    
Sbjct: 194 GRLKVWNTN----FQIRYTFKAHESNVNHLSISPNGKYIATGGKDKKLLIWDILNLTYPQ 249
Query: 227 KTYVTERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKG 286
           + +     +N +  +P L  V +G  Q                    + I + E  G KG
Sbjct: 250 REFDAGSTINQIAFNPKLQWVAVGTDQGVKIFNLMTQSKAPVCTIEAEPITKAE--GQKG 307
Query: 287 HFGPINALAFNPDGKR 302
                 +LA+N  GK+
Sbjct: 308 KNPQCTSLAWNALGKK 323

>pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A Resolution Of 2.45 Angstrom Length = 340

Iteration: 1
 Score = 54.3 bits (129), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 72/306 (23%), Positives = 120/306 (39%), Gaps = 30/306 (9%)
Query: 6   MKGHERPLTYLKYNKD-GDLLFSCAKDHTPTVW-----FADNGERLGTYRGHNGAVWCCD 59
           +KGH   +T +       D++ S ++D T  +W       + G      RGH+  V    
Sbjct: 34  LKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVV 93
Query: 60  VSRDSMTLITGSADQTAKLWNVETGAQLFTF-NFDSPARSVDFAVGDKLAVI-TTDPFME 117
           +S D    ++GS D T +LW++ TG     F        SV F+  ++  V  + D  ++
Sbjct: 94  ISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIK 153
Query: 118 LNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTET 177
           L + + V +              +   P            N  I+S G D +V++W+   
Sbjct: 154 LWNTLGVCKYTVQDESHSEWVSCVRFSPNSS---------NPIIVSCGWDKLVKVWNLAN 204
Query: 178 GKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTERPVNA 237
            KL       TG+  T+T    + DGS   +G  D  A LWD    + + T      +NA
Sbjct: 205 CKLKTNHIGHTGYLNTVTV---SPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGGDIINA 261
Query: 238 VTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGP--INALA 295
           +  SP  +   L       A T    +    E K     L++E+        P    +LA
Sbjct: 262 LCFSP--NRYWL------CAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLA 313
Query: 296 FNPDGK 301
           ++ DG+
Sbjct: 314 WSADGQ 319

>pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An 80s Complex Obtained By Docking Homology Models Of The Rna And Proteins Into An 8.7 A Cryo-Em Map Length = 317

Iteration: 1
 Score = 53.9 bits (128), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 72/306 (23%), Positives = 120/306 (39%), Gaps = 30/306 (9%)
Query: 6   MKGHERPLTYLKYNKD-GDLLFSCAKDHTPTVW-----FADNGERLGTYRGHNGAVWCCD 59
           +KGH   +T +       D++ S ++D T  +W       + G      RGH+  V    
Sbjct: 11  LKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVV 70
Query: 60  VSRDSMTLITGSADQTAKLWNVETGAQLFTF-NFDSPARSVDFAVGDKLAVI-TTDPFME 117
           +S D    ++GS D T +LW++ TG     F        SV F+  ++  V  + D  ++
Sbjct: 71  ISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIK 130
Query: 118 LNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTET 177
           L + + V +              +   P            N  I+S G D +V++W+   
Sbjct: 131 LWNTLGVCKYTVQDESHSEWVSCVRFSPNSS---------NPIIVSCGWDKLVKVWNLAN 181
Query: 178 GKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTERPVNA 237
            KL       TG+  T+T    + DGS   +G  D  A LWD    + + T      +NA
Sbjct: 182 CKLKTNHIGHTGYLNTVTV---SPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGGDIINA 238
Query: 238 VTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGP--INALA 295
           +  SP  +   L       A T    +    E K     L++E+        P    +LA
Sbjct: 239 LCFSP--NRYWL------CAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLA 290
Query: 296 FNPDGK 301
           ++ DG+
Sbjct: 291 WSADGQ 296

>pdb|2YNO|A Chain A, Yeast Betaprime Cop 1-304h6 Length = 310

Iteration: 1
 Score = 53.5 bits (127), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 52/227 (22%), Positives = 91/227 (40%), Gaps = 29/227 (12%)
Query: 76  AKLWNVETGAQLFTFNF-DSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQ 134
            +LWN ET  ++ +    ++P R+  F       ++ +D F          RI R     
Sbjct: 37  VELWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDF----------RI-RVFNYN 85
Query: 135 GGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTI 194
            GE V+  +     I      P    ++S  +D  V++W+ E    L+++ +  GH+  +
Sbjct: 86  TGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFE--GHEHFV 143
Query: 195 TSLA-KAADGSHFLTGSLDKSAKLWD--ARTLELIKTYVTERPVNAVTMSPLLDHVVLGG 251
             +A    D S F +G LD++ K+W     T     T   ER VN V   PL D   +  
Sbjct: 144 MCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMIT 203
Query: 252 GQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNP 298
             D   +            K +D   +  +  ++GH   ++   F+P
Sbjct: 204 ASDDLTI------------KIWDYQTKSCVATLEGHMSNVSFAVFHP 238

>pdb|2YNN|A Chain A, Yeast Betaprime Cop 1-304 With Ktktn Motif Length = 304

Iteration: 1
 Score = 53.5 bits (127), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 52/227 (22%), Positives = 91/227 (40%), Gaps = 29/227 (12%)
Query: 76  AKLWNVETGAQLFTFNF-DSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQ 134
            +LWN ET  ++ +    ++P R+  F       ++ +D F          RI R     
Sbjct: 37  VELWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDF----------RI-RVFNYN 85
Query: 135 GGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTI 194
            GE V+  +     I      P    ++S  +D  V++W+ E    L+++ +  GH+  +
Sbjct: 86  TGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFE--GHEHFV 143
Query: 195 TSLA-KAADGSHFLTGSLDKSAKLWD--ARTLELIKTYVTERPVNAVTMSPLLDHVVLGG 251
             +A    D S F +G LD++ K+W     T     T   ER VN V   PL D   +  
Sbjct: 144 MCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMIT 203
Query: 252 GQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNP 298
             D   +            K +D   +  +  ++GH   ++   F+P
Sbjct: 204 ASDDLTI------------KIWDYQTKSCVATLEGHMSNVSFAVFHP 238

>pdb|3FRX|A Chain A, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1. Length = 319

Iteration: 1
 Score = 53.5 bits (127), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 74/310 (23%), Positives = 130/310 (41%), Gaps = 37/310 (11%)
Query: 6   MKGHERPLTYLKYNK-DGDLLFSCAKDHTPTVW-FADNGERLG----TYRGHNGAVWCCD 59
           ++GH   +T L  +    +LL S ++D T   W    + ++ G    +++GH+  V  C 
Sbjct: 13  LEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCT 72
Query: 60  VSRDSMTLITGSADQTAKLWNVETGAQLFTF-NFDSPARSVDFAVGDKLAVITTDPFMEL 118
           ++ D    ++ S D+T +LW+V TG     F    S   SVD  +  K + I +      
Sbjct: 73  LTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVXSVD--IDKKASXIISG---SR 127
Query: 119 NSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNR------TIISAGEDAIVRI 172
           +  I V  I        G+ +  L G    +++    P  +      TIISAG D  V+ 
Sbjct: 128 DKTIKVWTIK-------GQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKXVKA 180
Query: 173 WDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTE 232
           W+    ++  E+D   GH   I +L  + DG+   +   D    LW+    +   T   +
Sbjct: 181 WNLNQFQI--EAD-FIGHNSNINTLTASPDGTLIASAGKDGEIXLWNLAAKKAXYTLSAQ 237
Query: 233 RPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGP-I 291
             V ++  SP  +   L      +A T T  +    + ++    L+ E  G      P  
Sbjct: 238 DEVFSLAFSP--NRYWL------AAATATGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHA 289
Query: 292 NALAFNPDGK 301
            +LA++ DG+
Sbjct: 290 VSLAWSADGQ 299

>pdb|2YNP|A Chain A, Yeast Betaprime Cop 1-604 With Ktktn Motif Length = 604

Iteration: 1
 Score = 52.8 bits (125), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 53/227 (23%), Positives = 93/227 (40%), Gaps = 29/227 (12%)
Query: 76  AKLWNVETGAQLFTFNF-DSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQ 134
            +LWN ET  ++ +    ++P R+  F       ++ +D F          RI R     
Sbjct: 37  VELWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDF----------RI-RVFNYN 85
Query: 135 GGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTI 194
            GE V+  +     I      P    ++S  +D  V++W+ E    L+++ +  GH+  +
Sbjct: 86  TGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFE--GHEHFV 143
Query: 195 TSLA-KAADGSHFLTGSLDKSAKLWD--ARTLELIKTYVTERPVNAVTMSPLLDHVVLGG 251
             +A    D S F +G LD++ K+W     T     T   ER VN V   PL D   +  
Sbjct: 144 MCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYM-- 201
Query: 252 GQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNP 298
                 +T +D        K +D   +  +  ++GH   ++   F+P
Sbjct: 202 ------ITASD----DLTIKIWDYQTKSCVATLEGHMSNVSFAVFHP 238

>pdb|3FM0|A Chain A, Crystal Structure Of Wd40 Protein Ciao1 Length = 345

Iteration: 1
 Score = 51.6 bits (122), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 41/163 (25%), Positives = 70/163 (42%), Gaps = 9/163 (5%)
Query: 140 LILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAK 199
           ++ +G Q  + +  W P    + SA  DA   IW          +  E GH+  + S+A 
Sbjct: 55  VLSEGHQRTVRKVAWSPCGNYLASASFDATTCIWKKNQDDFECVTTLE-GHENEVKSVAW 113
Query: 200 AADGSHFLTGSLDKSAKLWDARTLELIKTYVTERPVNAVTMSPLLDHVVLGGGQDASAVT 259
           A  G+   T S DKS  +W+   ++    Y     +N+ T    + HVV    Q+  A  
Sbjct: 114 APSGNLLATCSRDKSVWVWE---VDEEDEYECVSVLNSHTQD--VKHVVWHPSQELLASA 168
Query: 260 TTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKR 302
           + D     +  +  D +       ++GH   + +LAF+P G+R
Sbjct: 169 SYDDTVKLYREEEDDWVC---CATLEGHESTVWSLAFDPSGQR 208

>pdb|3MKQ|A Chain A, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex Of The Copi Vesicular Coat Length = 814

Iteration: 1
 Score = 51.2 bits (121), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 52/227 (22%), Positives = 93/227 (40%), Gaps = 29/227 (12%)
Query: 76  AKLWNVETGAQLFTFNF-DSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQ 134
            ++WN ET  ++ +    ++P R+  F       ++ +D F          RI R     
Sbjct: 37  VEIWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDF----------RI-RVFNYN 85
Query: 135 GGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTI 194
            GE V+  +     I      P    ++S  +D  V++W+ E    L+++ +  GH+  +
Sbjct: 86  TGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFE--GHEHFV 143
Query: 195 TSLA-KAADGSHFLTGSLDKSAKLWD--ARTLELIKTYVTERPVNAVTMSPLLDHVVLGG 251
             +A    D S F +G LD++ K+W     T     T   ER VN V   PL D   +  
Sbjct: 144 MCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYM-- 201
Query: 252 GQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNP 298
                 +T +D        K +D   +  +  ++GH   ++   F+P
Sbjct: 202 ------ITASD----DLTIKIWDYQTKSCVATLEGHMSNVSFAVFHP 238

>pdb|3ODT|A Chain A, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1 Length = 313

Iteration: 1
 Score = 48.9 bits (115), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 49/178 (27%), Positives = 77/178 (43%), Gaps = 22/178 (12%)
Query: 6   MKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDV-SRDS 64
           + GH+  +  L + +DG ++ S + D T  VW    G  +   + HN +VW   V S   
Sbjct: 100 LIGHQGNVCSLSF-QDG-VVISGSWDKTAKVW--KEGSLVYNLQAHNASVWDAKVVSFSE 155
Query: 65  MTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHV 124
              +T SAD+T KLW  +   + F+   +   R         LAV+    F+  ++   +
Sbjct: 156 NKFLTASADKTIKLWQNDKVIKTFSGIHNDVVR--------HLAVVDDGHFISCSNDGLI 207
Query: 125 KRIARDPADQGGESVLILKGPQGRINRAVWGPL--NRTIISAGEDAIVRIWDTETGKL 180
           K +     D       +L+  +G  +      L  N  I+S GED  VRIW  E G L
Sbjct: 208 KLVDXHTGD-------VLRTYEGHESFVYCIKLLPNGDIVSCGEDRTVRIWSKENGSL 258

>pdb|1GOT|B Chain B, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And The Gt-Beta-Gamma Subunits Length = 340

Iteration: 1
 Score = 48.9 bits (115), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 35/148 (23%), Positives = 60/148 (40%), Gaps = 18/148 (12%)
Query: 155 GPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKS 214
            P  R  +S   DA  ++WD   G   +     TGH+  I ++    +G+ F TGS D +
Sbjct: 193 APDTRLFVSGACDASAKLWDVREGMCRQTF---TGHESDINAICFFPNGNAFATGSDDAT 249
Query: 215 AKLWDARTLELIKTYVTERPVNAVTMSPLLD--HVVLGGGQDASAVTTTDHRAGKFEAKF 272
            +L+D R  + + TY  +  +  +T         ++L G  D             F    
Sbjct: 250 CRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDD-------------FNCNV 296
Query: 273 FDKILQEEIGGVKGHFGPINALAFNPDG 300
           +D +  +  G + GH   ++ L    DG
Sbjct: 297 WDALKADRAGVLAGHDNRVSCLGVTDDG 324

>pdb|1A0R|B Chain B, Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-Gamma Length = 340

Iteration: 1
 Score = 48.9 bits (115), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 35/148 (23%), Positives = 60/148 (40%), Gaps = 18/148 (12%)
Query: 155 GPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKS 214
            P  R  +S   DA  ++WD   G   +     TGH+  I ++    +G+ F TGS D +
Sbjct: 193 APDTRLFVSGACDASAKLWDVREGMCRQTF---TGHESDINAICFFPNGNAFATGSDDAT 249
Query: 215 AKLWDARTLELIKTYVTERPVNAVTMSPLLD--HVVLGGGQDASAVTTTDHRAGKFEAKF 272
            +L+D R  + + TY  +  +  +T         ++L G  D             F    
Sbjct: 250 CRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDD-------------FNCNV 296
Query: 273 FDKILQEEIGGVKGHFGPINALAFNPDG 300
           +D +  +  G + GH   ++ L    DG
Sbjct: 297 WDALKADRAGVLAGHDNRVSCLGVTDDG 324

>pdb|2BCJ|B Chain B, Crystal Structure Of G Protein-coupled Receptor Kinase 2 In Complex With Galpha-q And Gbetagamma Subunits Length = 340

Iteration: 1
 Score = 48.9 bits (115), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 35/148 (23%), Positives = 60/148 (40%), Gaps = 18/148 (12%)
Query: 155 GPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKS 214
            P  R  +S   DA  ++WD   G   +     TGH+  I ++    +G+ F TGS D +
Sbjct: 193 APDTRLFVSGACDASAKLWDVREGMCRQTF---TGHESDINAICFFPNGNAFATGSDDAT 249
Query: 215 AKLWDARTLELIKTYVTERPVNAVTMSPLLD--HVVLGGGQDASAVTTTDHRAGKFEAKF 272
            +L+D R  + + TY  +  +  +T         ++L G  D             F    
Sbjct: 250 CRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDD-------------FNCNV 296
Query: 273 FDKILQEEIGGVKGHFGPINALAFNPDG 300
           +D +  +  G + GH   ++ L    DG
Sbjct: 297 WDALKADRAGVLAGHDNRVSCLGVTDDG 324

>pdb|1GG2|B Chain B, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1 Gamma_2 With Gdp Bound Length = 340

Iteration: 1
 Score = 48.9 bits (115), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 35/148 (23%), Positives = 60/148 (40%), Gaps = 18/148 (12%)
Query: 155 GPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKS 214
            P  R  +S   DA  ++WD   G   +     TGH+  I ++    +G+ F TGS D +
Sbjct: 193 APDTRLFVSGACDASAKLWDVREGMCRQTF---TGHESDINAICFFPNGNAFATGSDDAT 249
Query: 215 AKLWDARTLELIKTYVTERPVNAVTMSPLLD--HVVLGGGQDASAVTTTDHRAGKFEAKF 272
            +L+D R  + + TY  +  +  +T         ++L G  D             F    
Sbjct: 250 CRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDD-------------FNCNV 296
Query: 273 FDKILQEEIGGVKGHFGPINALAFNPDG 300
           +D +  +  G + GH   ++ L    DG
Sbjct: 297 WDALKADRAGVLAGHDNRVSCLGVTDDG 324

>pdb|3SN6|B Chain B, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs Protein Complex Length = 351

Iteration: 1
 Score = 48.5 bits (114), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 35/148 (23%), Positives = 60/148 (40%), Gaps = 18/148 (12%)
Query: 155 GPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKS 214
            P  R  +S   DA  ++WD   G   +     TGH+  I ++    +G+ F TGS D +
Sbjct: 204 APDTRLFVSGACDASAKLWDVREGMCRQTF---TGHESDINAICFFPNGNAFATGSDDAT 260
Query: 215 AKLWDARTLELIKTYVTERPVNAVTMSPLLD--HVVLGGGQDASAVTTTDHRAGKFEAKF 272
            +L+D R  + + TY  +  +  +T         ++L G  D             F    
Sbjct: 261 CRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDD-------------FNCNV 307
Query: 273 FDKILQEEIGGVKGHFGPINALAFNPDG 300
           +D +  +  G + GH   ++ L    DG
Sbjct: 308 WDALKADRAGVLAGHDNRVSCLGVTDDG 335

>pdb|4GGA|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site Degron Recognition By ApcC Length = 420

Iteration: 1
 Score = 46.6 bits (109), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 51/178 (28%), Positives = 78/178 (43%), Gaps = 22/178 (12%)
Query: 6   MKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGE----RLGTYRGHNGAV----WC 57
           + GH + +  L++  DG  L S   D+   VW +  GE     L T+  H GAV    WC
Sbjct: 226 LSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWC 285
Query: 58  CDVSRDSMTLITG--SADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPF 115
                 S  L TG  ++D+  ++WNV +GA L   +  S   S+ ++   K  +I+   F
Sbjct: 286 ---PWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSILWSPHYK-ELISGHGF 341
Query: 116 MELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIW 173
            + N  +    I + P       V  LKG   R+      P   T+ SA  D  +R+W
Sbjct: 342 AQ-NQLV----IWKYPT---MAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLW 391

>pdb|4GGD|A Chain A, Structural Analysis Of Human Cdc20 Supports Multisite Degron Recognition By ApcC. Length = 431

Iteration: 1
 Score = 46.6 bits (109), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 51/178 (28%), Positives = 78/178 (43%), Gaps = 22/178 (12%)
Query: 6   MKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGE----RLGTYRGHNGAV----WC 57
           + GH + +  L++  DG  L S   D+   VW +  GE     L T+  H GAV    WC
Sbjct: 237 LSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWC 296
Query: 58  CDVSRDSMTLITG--SADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPF 115
                 S  L TG  ++D+  ++WNV +GA L   +  S   S+ ++   K  +I+   F
Sbjct: 297 ---PWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSILWSPHYK-ELISGHGF 352
Query: 116 MELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIW 173
            + N  +    I + P       V  LKG   R+      P   T+ SA  D  +R+W
Sbjct: 353 AQ-NQLV----IWKYPT---MAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLW 402

>pdb|4GGC|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site Degron Recognition By ApcC Length = 318

Iteration: 1
 Score = 46.2 bits (108), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 51/178 (28%), Positives = 78/178 (43%), Gaps = 22/178 (12%)
Query: 6   MKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGE----RLGTYRGHNGAV----WC 57
           + GH + +  L++  DG  L S   D+   VW +  GE     L T+  H GAV    WC
Sbjct: 146 LSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWC 205
Query: 58  CDVSRDSMTLITG--SADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPF 115
                 S  L TG  ++D+  ++WNV +GA L   +  S   S+ ++   K  +I+   F
Sbjct: 206 ---PWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSILWSPHYK-ELISGHGF 261
Query: 116 MELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIW 173
            + N  +    I + P       V  LKG   R+      P   T+ SA  D  +R+W
Sbjct: 262 AQ-NQLV----IWKYPT---MAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLW 311

>pdb|2AQ5|A Chain A, Crystal Structure Of Murine Coronin-1 Length = 402

Iteration: 1
 Score = 45.4 bits (106), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 31/110 (28%), Positives = 54/110 (49%), Gaps = 6/110 (5%)
Query: 137 ESVLILKGPQGRINRAVWGPLNRTII-SAGEDAIVRIWDTETGKLLKESDKETGHKKTIT 195
           E V+ L+G   R+    W P  + ++ SAG D ++ +WD  TG  +     +  H  TI 
Sbjct: 122 EPVITLEGHTKRVGIVAWHPTAQNVLLSAGXDNVILVWDVGTGAAVLTLGPDV-HPDTIY 180
Query: 196 SLAKAADGSHFLTGSLDKSAKLWDARTLELI----KTYVTERPVNAVTMS 241
           S+  + DG+   T   DK  ++ + R   ++    + +   RPV+AV +S
Sbjct: 181 SVDWSRDGALICTSCRDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVS 230

>pdb|2B4E|A Chain A, Crystal Structure Of Murine Coronin-1: Monoclinic Form Length = 402

Iteration: 1
 Score = 45.1 bits (105), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 31/110 (28%), Positives = 54/110 (49%), Gaps = 6/110 (5%)
Query: 137 ESVLILKGPQGRINRAVWGPLNRTII-SAGEDAIVRIWDTETGKLLKESDKETGHKKTIT 195
           E V+ L+G   R+    W P  + ++ SAG D ++ +WD  TG  +     +  H  TI 
Sbjct: 122 EPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDV-HPDTIY 180
Query: 196 SLAKAADGSHFLTGSLDKSAKLWDARTLELI----KTYVTERPVNAVTMS 241
           S+  + DG+   T   DK  ++ + R   ++    + +   RPV+AV +S
Sbjct: 181 SVDWSRDGALICTSCRDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVS 230

>pdb|1NR0|A Chain A, Two Seven-Bladed Beta-Propeller Domains Revealed By The Structure Of A C. Elegans Homologue Of Yeast Actin Interacting Protein 1 (Aip1). Length = 611

Iteration: 1
 Score = 44.7 bits (104), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 25/82 (30%), Positives = 41/82 (50%), Gaps = 7/82 (8%)
Query: 9   HERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYR-------GHNGAVWCCDVS 61
           H + +  ++YN DG L  S   D T  ++   +G + G +         H+G+V+    S
Sbjct: 189 HTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWS 248
Query: 62  RDSMTLITGSADQTAKLWNVET 83
            D   + + SAD+T K+WNV T
Sbjct: 249 PDGTKIASASADKTIKIWNVAT 270

>pdb|4A11|B Chain B, Structure Of The Hsddb1-Hscsa Complex Length = 408

Iteration: 1
 Score = 44.7 bits (104), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 47/180 (26%), Positives = 73/180 (40%), Gaps = 30/180 (16%)
Query: 63  DSMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFA-VGDK---LAVITTDPFMEL 118
           D+    + S D+T K+W+  T      FNF+    S   + V  K   +AV T  P ++L
Sbjct: 111 DTGMFTSSSFDKTLKVWDTNTLQTADVFNFEETVYSHHMSPVSTKHCLVAVGTRGPKVQL 170
Query: 119 NSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTII-SAGEDAIVRIWDTE- 176
                          + G    IL+G +  I    W P    I+ +A  D+ V++WD   
Sbjct: 171 CDL------------KSGSCSHILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRR 218
Query: 177 -TGKLL-------KESDK----ETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLE 224
            +G L+       K+S       T H   +  L   +DG H LT   D   +LW++   E
Sbjct: 219 ASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSSNGE 278

>pdb|4A11|B Chain B, Structure Of The Hsddb1-Hscsa Complex Length = 408

Iteration: 1
 Score = 44.3 bits (103), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 51/204 (25%), Positives = 86/204 (42%), Gaps = 43/204 (21%)
Query: 116 MELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDT 175
           +ELN    V+RI       GG + L ++  +GR            ++S G D ++ ++D 
Sbjct: 30  LELNKDRDVERI-----HGGGINTLDIEPVEGRY-----------MLSGGSDGVIVLYDL 73
Query: 176 E--------TGKLLKE--SDKETGHKKTITSLA-KAADGSHFLTGSLDKSAKLWDARTLE 224
           E        T K +     D    H+ ++ ++     D   F + S DK+ K+WD  TL+
Sbjct: 74  ENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQ 133
Query: 225 LIKTYVTERPVNAVTMSPL-LDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGG 283
               +  E  V +  MSP+   H ++  G     V   D ++G         ILQ     
Sbjct: 134 TADVFNFEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCS-----HILQ----- 183
Query: 284 VKGHFGPINALAFNPDGKRYGFLL 307
             GH   I A++++P   RY ++L
Sbjct: 184 --GHRQEILAVSWSP---RYDYIL 202

>pdb|4G56|B Chain B, Crystal Structure Of Full Length Prmt5/mep50 Complexes From Xenopus Laevis Length = 357

Iteration: 1
 Score = 44.3 bits (103), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 34/135 (25%), Positives = 58/135 (42%), Gaps = 16/135 (11%)
Query: 136 GESVLILKGPQGRINRAVWGPLNRT--------------IISAGEDAIVRIWDT-ETGKL 180
           G S+ + K P+G  N ++     +T              I+ A +   V +W+  E   L
Sbjct: 69  GGSIWVFKDPEGAPNESLCTAGVQTEAGVTDVAWVSEKGILVASDSGAVELWEILEKESL 128
Query: 181 LKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTY-VTERPVNAVT 239
           L     +  H   + +L+  +DG+  ++G  D S K+WD     ++K+Y      VN V 
Sbjct: 129 LVNKFAKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCVA 188
Query: 240 MSPLLDHVVLGGGQD 254
             P  D + L  G+D
Sbjct: 189 ACPGKDTIFLSCGED 203

>pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana Length = 694

Iteration: 1
 Score = 44.3 bits (103), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 56/247 (22%), Positives = 106/247 (42%), Gaps = 22/247 (8%)
Query: 6   MKGHERPLTYLKYNKD-GDLLFSCAKDHTPTVW-FADNGERLGTYR----GHNGAVWCCD 59
           M+ H   +T +    D  D++ S ++D +  +W    + +  G  +    GH+  V    
Sbjct: 378 MRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVV 437
Query: 60  VSRDSMTLITGSADQTAKLWNVETGAQLFTF-NFDSPARSVDFAVGDKLAVITT-DPFME 117
           +S D    ++GS D   +LW++  G     F        SV F++ ++  V  + D  ++
Sbjct: 438 LSSDGQFALSGSWDGELRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIK 497
Query: 118 LNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGP--LNRTIISAGEDAIVRIWDT 175
           L + +   +       +GGE      G +  ++   + P  L  TI+SA  D  V++W+ 
Sbjct: 498 LWNTLGECKYT---ISEGGE------GHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNL 548
Query: 176 ETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTERPV 235
              KL        GH   ++++A + DGS   +G  D    LWD    + + +      +
Sbjct: 549 SNCKL---RSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYSLEANSVI 605
Query: 236 NAVTMSP 242
           +A+  SP
Sbjct: 606 HALCFSP 612

>pdb|3VL1|A Chain A, Crystal Structure Of Yeast Rpn14 Length = 420

Iteration: 1
 Score = 43.5 bits (101), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 24/85 (28%), Positives = 38/85 (44%)
Query: 7   KGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMT 66
           + H   +T LK+   G+ L S ++D    +W   +G    T  GH   V    +      
Sbjct: 136 QAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRN 195
Query: 67  LITGSADQTAKLWNVETGAQLFTFN 91
           +++ S D T +LW   TG  + TFN
Sbjct: 196 VLSASLDGTIRLWECGTGTTIHTFN 220

>pdb|3VL1|A Chain A, Crystal Structure Of Yeast Rpn14 Length = 420

Iteration: 1
 Score = 41.6 bits (96), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 29/100 (29%), Positives = 48/100 (48%), Gaps = 8/100 (8%)
Query: 148 RINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKET--GHKKTITSLAKAADGSH 205
            I +  + P    +IS+ +D  ++IW  + G     S+  T  GH+ T+T +A    G +
Sbjct: 141 EITKLKFFPSGEALISSSQDMQLKIWSVKDG-----SNPRTLIGHRATVTDIAIIDRGRN 195
Query: 206 FLTGSLDKSAKLWDARTLELIKTY-VTERPVNAVTMSPLL 244
            L+ SLD + +LW+  T   I T+   E P + V    L 
Sbjct: 196 VLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALF 235

>pdb|3ACP|A Chain A, Crystal Structure Of Yeast Rpn14, A Chaperone Of The 19s Reg Particle Of The Proteasome Length = 417

Iteration: 1
 Score = 43.5 bits (101), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 24/85 (28%), Positives = 38/85 (44%)
Query: 7   KGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMT 66
           + H   +T LK+   G+ L S ++D    +W   +G    T  GH   V    +      
Sbjct: 133 QAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRN 192
Query: 67  LITGSADQTAKLWNVETGAQLFTFN 91
           +++ S D T +LW   TG  + TFN
Sbjct: 193 VLSASLDGTIRLWECGTGTTIHTFN 217

>pdb|3ACP|A Chain A, Crystal Structure Of Yeast Rpn14, A Chaperone Of The 19s Reg Particle Of The Proteasome Length = 417

Iteration: 1
 Score = 41.6 bits (96), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 25/84 (29%), Positives = 43/84 (51%), Gaps = 7/84 (8%)
Query: 148 RINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKET--GHKKTITSLAKAADGSH 205
            I +  + P    +IS+ +D  ++IW  + G     S+  T  GH+ T+T +A    G +
Sbjct: 138 EITKLKFFPSGEALISSSQDMQLKIWSVKDG-----SNPRTLIGHRATVTDIAIIDRGRN 192
Query: 206 FLTGSLDKSAKLWDARTLELIKTY 229
            L+ SLD + +LW+  T   I T+
Sbjct: 193 VLSASLDGTIRLWECGTGTTIHTF 216

>pdb|1R5M|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Sif2 Length = 425

Iteration: 1
 Score = 42.7 bits (99), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 22/80 (27%), Positives = 39/80 (48%), Gaps = 1/80 (1%)
Query: 8   GHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTL 67
           GH  P++ L++N    LL S + D T  +W   NG     + GH+ ++       D   +
Sbjct: 245 GHHGPISVLEFNDTNKLLLSASDDGTLRIWHGGNGNSQNCFYGHSQSIVSASWVGDD-KV 303
Query: 68  ITGSADQTAKLWNVETGAQL 87
           I+ S D + +LW+++    L
Sbjct: 304 ISCSMDGSVRLWSLKQNTLL 323

>pdb|1K8K|C Chain C, Crystal Structure Of Arp23 COMPLEX Length = 372

Iteration: 1
 Score = 42.4 bits (98), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 70/282 (24%), Positives = 111/282 (39%), Gaps = 37/282 (13%)
Query: 12  PLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTY--RGHNGAVWCCDVSRDSMTLIT 69
           P++   +NKD   +  C  +H   ++     + +  +  + HNG V   D + DS  ++T
Sbjct: 10  PISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVT 69
Query: 70  GSADQTAKLWNVE---TGAQLFTFNFDSPARSV-------DFAVGDKLAVITTDPFMELN 119
              D+ A +W ++       L     +  AR V        FAVG    VI+   F + N
Sbjct: 70  CGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQEN 129
Query: 120 S---AIHVKRIARDPA---DQGGESVLILKGP---QGRINRAVWGPLNRTIISAGEDAIV 170
                 H+K+  R      D    SVL+  G    + RI  A        I    E    
Sbjct: 130 DWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAY-------IKEVEERPAP 182
Query: 171 RIWDTET--GKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKT 228
             W ++   G+L+ ES    G    +  +  +A+GS     S D +  L DA     + T
Sbjct: 183 TPWGSKMPFGELMFESSSSCGW---VHGVCFSANGSRVAWVSHDSTVCLADADKKMAVAT 239
Query: 229 YVTER-PVNAVTMSPLLDHVVLGGGQDASAVT-TTDHRAGKF 268
             +E  P+ AVT   + +  ++  G D   V  T D  AGK 
Sbjct: 240 LASETLPLLAVTF--ITESSLVAAGHDCFPVLFTYDSAAGKL 279

>pdb|4AEZ|A Chain A, Crystal Structure Of Mitotic Checkpoint Complex Length = 401

Iteration: 1
 Score = 42.4 bits (98), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 54/243 (22%), Positives = 103/243 (42%), Gaps = 22/243 (9%)
Query: 6   MKGHERPLTYLKYNKDGDLLFSCAKD---HTPTVWFADNGERLGTYRGHNGAVWCCDVSR 62
           M GH+  +  L +N+   +L S ++    H   V  A++  ++GT +GH+  V       
Sbjct: 172 MAGHQARVGCLSWNRH--VLSSGSRSGAIHHHDVRIANH--QIGTLQGHSSEVCGLAWRS 227
Query: 63  DSMTLITGSADQTAKLWNVETGAQLFT-FNFDSPARSVDFAVGDKLAVITTDPFMELNSA 121
           D + L +G  D   ++W+  +    FT  N ++  ++V +       + T    M+    
Sbjct: 228 DGLQLASGGNDNVVQIWDARSSIPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMD---- 283
Query: 122 IHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAG--EDAIVRIWDTETGK 179
              K+I    A  G     +  G Q  +   +W P ++ I+S     D  + IW   +  
Sbjct: 284 ---KQIHFWNAATGARVNTVDAGSQ--VTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSG 338
Query: 180 LLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIK--TYVTERPVNA 237
           L K+ D    H   +   A + DG    T + D++ K W     + +K    +T+ P ++
Sbjct: 339 LTKQVDIP-AHDTRVLYSALSPDGRILSTAASDENLKFWRVYDGDHVKRPIPITKTPSSS 397
Query: 238 VTM 240
           +T+
Sbjct: 398 ITI 400

>pdb|3OW8|A Chain A, Crystal Structure Of The Wd Repeat-Containing Protein 61 Length = 321

Iteration: 1
 Score = 42.4 bits (98), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 53/233 (22%), Positives = 103/233 (44%), Gaps = 23/233 (9%)
Query: 6   MKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSM 65
           ++GH+  +  +  +    +  S + D    +W  +NG+++ +        W    S DS 
Sbjct: 76  LEGHQLGVVSVDISHTLPIAASSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQ 135
Query: 66  TLITGSADQTAKLWNVETGAQLFTFN-----FDSPARSVDFAVGDKLAVITTDPFMELNS 120
            L TG+      ++ VE+G + ++ +       S A S D   G  LA    D       
Sbjct: 136 YLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPD---GKYLASGAIDGI----- 187
Query: 121 AIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKL 180
            I++  IA       G+ +  L+G    I    + P ++ +++A +D  ++I+D +   L
Sbjct: 188 -INIFDIAT------GKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANL 240
Query: 181 LKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTER 233
              +   +GH   + ++A   D +HF++ S DKS K+WD  T   + T+   +
Sbjct: 241 ---AGTLSGHASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCVHTFFDHQ 290

>pdb|3DXK|C Chain C, Structure Of Bos Taurus Arp23 COMPLEX WITH BOUND INHIBITOR Ck0944636 Length = 372

Iteration: 1
 Score = 42.4 bits (98), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 70/282 (24%), Positives = 111/282 (39%), Gaps = 37/282 (13%)
Query: 12  PLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTY--RGHNGAVWCCDVSRDSMTLIT 69
           P++   +NKD   +  C  +H   ++     + +  +  + HNG V   D + DS  ++T
Sbjct: 10  PISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGIDWAPDSNRIVT 69
Query: 70  GSADQTAKLWNVE---TGAQLFTFNFDSPARSV-------DFAVGDKLAVITTDPFMELN 119
              D+ A +W ++       L     +  AR V        FAVG    VI+   F + N
Sbjct: 70  CGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQEN 129
Query: 120 S---AIHVKRIARDPA---DQGGESVLILKGP---QGRINRAVWGPLNRTIISAGEDAIV 170
                 H+K+  R      D    SVL+  G    + RI  A        I    E    
Sbjct: 130 DWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAY-------IKEVEERPAP 182
Query: 171 RIWDTET--GKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKT 228
             W ++   G+L+ ES    G    +  +  +A+GS     S D +  L DA     + T
Sbjct: 183 TPWGSKMPFGELMFESSSSCGW---VHGVCFSANGSRVAWVSHDSTVCLADADKKMAVAT 239
Query: 229 YVTER-PVNAVTMSPLLDHVVLGGGQDASAVT-TTDHRAGKF 268
             +E  P+ AVT   + +  ++  G D   V  T D  AGK 
Sbjct: 240 LASETLPLLAVTF--ITESSLVAAGHDCFPVLFTYDSAAGKL 279

>pdb|3CFS|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH Histone H4 Length = 414

Iteration: 1
 Score = 40.8 bits (94), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 32/118 (27%), Positives = 51/118 (43%), Gaps = 4/118 (3%)
Query: 141 ILKGPQGRINRAVWGPLNRTII-SAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAK 199
           I  G    +    W  L+ ++  S  +D  + IWDT +    K S     H   +  L+ 
Sbjct: 224 IFTGHSAVVEDVAWHLLHESLFGSVADDQKLMIWDTRSNTTSKPSHLVDAHTAEVNCLSF 283
Query: 200 AADGSHFL-TGSLDKSAKLWDARTLEL-IKTYVTER-PVNAVTMSPLLDHVVLGGGQD 254
                  L TGS DK+  LWD R L+L + T+ + +  +  V  SP  + ++   G D
Sbjct: 284 NPYSEFILATGSADKTVALWDLRNLKLKLHTFESHKDEIFQVHWSPHNETILASSGTD 341

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	313
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	100.0
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	100.0
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	100.0
3ow8_A	321	WD repeat-containing protein 61; structural genomi	100.0
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	100.0
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	100.0
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	100.0
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	100.0
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	100.0
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	100.0
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	100.0
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	100.0
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	100.0
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	100.0
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	100.0
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	100.0
2pm7_B	297	Protein transport protein SEC13, protein transport	100.0
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	100.0
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	100.0
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	100.0
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	100.0
3ow8_A	321	WD repeat-containing protein 61; structural genomi	100.0
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	100.0
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	100.0
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	100.0
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	100.0
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	100.0
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	100.0
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	100.0
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	100.0
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	100.0
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	100.0
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	100.0
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	100.0
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	100.0
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	100.0
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	100.0
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	100.0
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	100.0
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	100.0
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	100.0
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	100.0
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	100.0
3jrp_A	379	Fusion protein of protein transport protein SEC13	100.0
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	100.0
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	100.0
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	100.0
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	100.0
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	100.0
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	100.0
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	100.0
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	100.0
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	100.0
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	100.0
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	100.0
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	100.0
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	100.0
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	100.0
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	100.0
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	100.0
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	100.0
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	100.0
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	100.0
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	100.0
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	100.0
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	100.0
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	100.0
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	100.0
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	100.0
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	100.0
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	100.0
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	100.0
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	100.0
3jro_A	753	Fusion protein of protein transport protein SEC13	100.0
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	100.0
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	100.0
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	100.0
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	100.0
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	100.0
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	100.0
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	100.0
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	100.0
2pm7_B	297	Protein transport protein SEC13, protein transport	100.0
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	100.0
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	100.0
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	100.0
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	100.0
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	100.0
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	100.0
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	99.98
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	99.98
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	99.98
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	99.98
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	99.98
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	99.98
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	99.97
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	99.97
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	99.97
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	99.97
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	99.97
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	99.97
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	99.97
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	99.97
3jrp_A	379	Fusion protein of protein transport protein SEC13	99.97
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	99.97
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	99.97
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	99.97
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	99.97
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	99.97
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	99.97
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	99.97
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	99.97
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	99.97
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	99.96
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	99.96
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	99.96
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	99.96
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	99.96
3jro_A	753	Fusion protein of protein transport protein SEC13	99.96
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	99.96
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	99.96
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	99.96
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	99.96
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	99.95
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	99.95
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	99.95
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	99.94
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	99.93
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	99.93
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	99.92
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	99.92
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	99.92
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	99.92
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	99.91
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	99.91
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	99.9
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	99.9
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	99.89
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	99.89
1k32_A	1045	Tricorn protease; protein degradation, substrate g	99.88
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	99.88
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	99.88
1k32_A	1045	Tricorn protease; protein degradation, substrate g	99.88
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	99.88
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	99.88
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	99.88
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	99.87
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	99.86
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	99.86
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	99.85
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	99.85
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	99.84
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	99.84
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	99.84
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	99.84
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	99.83
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	99.8
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	99.79
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	99.79
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	99.78
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	99.77
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	99.77
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	99.76
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	99.76
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	99.75
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	99.72
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	99.72
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	99.71
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	99.7
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	99.7
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	99.7
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	99.69
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	99.69
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	99.68
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	99.66
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	99.65
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	99.65
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	99.63
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	99.62
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	99.62
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	99.6
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	99.56
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	99.56
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	99.55
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	99.54
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	99.54
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	99.54
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	99.52
1xip_A	388	Nucleoporin NUP159; beta-propeller, transport prot	99.5
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	99.5
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	99.49
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	99.49
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	99.48
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	99.46
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	99.43
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	99.4
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	99.39
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	99.39
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	99.38
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	99.37
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	99.36
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	99.36
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	99.35
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	99.34
1xip_A	388	Nucleoporin NUP159; beta-propeller, transport prot	99.34
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	99.31
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	99.29
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	99.28
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	99.27
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	99.25
2qe8_A	343	Uncharacterized protein; structural genomics, join	99.24
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	99.24
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	99.23
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	99.2
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	99.18
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	99.16
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	99.13
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	99.12
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	99.12
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	99.11
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	99.1
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	99.1
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	99.09
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	99.07
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	99.04
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	99.03
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	98.99
2ece_A	462	462AA long hypothetical selenium-binding protein;	98.97
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	98.96
2qe8_A	343	Uncharacterized protein; structural genomics, join	98.96
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	98.96
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	98.88
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	98.75
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	98.74
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	98.71
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	98.71
2ece_A	462	462AA long hypothetical selenium-binding protein;	98.7
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	98.69
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	98.64
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	98.63
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	98.56
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	98.5
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	98.5
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	98.45
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	98.44
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	98.43
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	98.4
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	98.38
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	98.35
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	98.33
2xe4_A	751	Oligopeptidase B; hydrolase-inhibitor complex, hyd	98.31
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	98.28
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	98.28
2p4o_A	306	Hypothetical protein; putative lactonase, structur	98.25
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	98.23
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	98.21
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	98.14
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	98.05
4a2l_A	795	BT_4663, two-component system sensor histidine kin	98.03
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	97.98
4a2l_A	795	BT_4663, two-component system sensor histidine kin	97.98
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	97.93
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	97.87
2xe4_A	751	Oligopeptidase B; hydrolase-inhibitor complex, hyd	97.83
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	97.73
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	97.7
3amr_A	355	3-phytase; beta-propeller, phytate, MYO-inositol h	97.58
2p4o_A	306	Hypothetical protein; putative lactonase, structur	97.53
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	97.4
3v9f_A	781	Two-component system sensor histidine kinase/RESP	97.35
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	97.16
3amr_A	355	3-phytase; beta-propeller, phytate, MYO-inositol h	97.05
3v65_B	386	Low-density lipoprotein receptor-related protein;	97.02
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	96.85
2xbg_A	327	YCF48-like protein; photosynthesis, photosystem II	96.85
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	96.78
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	96.77
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	96.73
2ism_A	352	Putative oxidoreductase; BL41XU spring-8, bladed b	96.72
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	96.68
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	96.64
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	96.47
3kya_A	496	Putative phosphatase; structural genomics, joint c	96.45
3v9f_A	781	Two-component system sensor histidine kinase/RESP	96.44
3a9g_A	354	Putative uncharacterized protein; PQQ dependent de	96.41
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	96.41
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	96.19
2xbg_A	327	YCF48-like protein; photosynthesis, photosystem II	96.18
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	96.12
3v65_B	386	Low-density lipoprotein receptor-related protein;	96.0
3kya_A	496	Putative phosphatase; structural genomics, joint c	95.96
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	95.82
3das_A	347	Putative oxidoreductase; aldose sugar dehydrogenas	95.72
2xzh_A	365	Clathrin heavy chain 1; endocytosis, endocytosis i	95.42
2g8s_A	353	Glucose/sorbosone dehydrogenases; bladed beta-prop	95.36
2ism_A	352	Putative oxidoreductase; BL41XU spring-8, bladed b	95.3
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	95.22
3sre_A	355	PON1, serum paraoxonase; directed evolution, 6-bla	94.38
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	94.35
1bpo_A	494	Protein (clathrin); clathrin endocytosis beta-prop	94.34
1tl2_A	236	L10, protein (tachylectin-2); animal lectin, horse	94.15
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	93.72
3pbp_A	452	Nucleoporin NUP82; beta-propeller, mRNA export, mR	93.68
3pbp_A	452	Nucleoporin NUP82; beta-propeller, mRNA export, mR	93.32
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	93.1
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	92.85
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	92.52
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	92.06
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	91.78
1cru_A	454	Protein (soluble quinoprotein glucose dehydrogena;	91.6
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	91.27
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	91.21
2be1_A	339	Serine/threonine-protein kinase/endoribonuclease;	90.96
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	90.88
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	90.47
2xzh_A	365	Clathrin heavy chain 1; endocytosis, endocytosis i	90.41
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	90.2
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	89.74
1cru_A	454	Protein (soluble quinoprotein glucose dehydrogena;	88.68
1bpo_A	494	Protein (clathrin); clathrin endocytosis beta-prop	87.37
2be1_A	339	Serine/threonine-protein kinase/endoribonuclease;	86.79
2wg3_C	463	Hedgehog-interacting protein; lipoprotein, develop	86.38
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	86.23
3das_A	347	Putative oxidoreductase; aldose sugar dehydrogenas	84.99
3sre_A	355	PON1, serum paraoxonase; directed evolution, 6-bla	84.98
2uvk_A	357	YJHT; unknown function, hypothetical protein, sial	84.67
4gq2_M	950	Nucleoporin NUP120; beta propeller alpha helical,	84.03
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	83.9
2g8s_A	353	Glucose/sorbosone dehydrogenases; bladed beta-prop	82.95
1tl2_A	236	L10, protein (tachylectin-2); animal lectin, horse	82.81
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	81.37
4gq2_M	950	Nucleoporin NUP120; beta propeller alpha helical,	81.13
3ei3_A	1158	DNA damage-binding protein 1; UV-damage, DDB, nucl	80.24

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=100.00  E-value=1.7e-42  Score=297.81  Aligned_cols=274  Identities=19%  Similarity=0.319  Sum_probs=230.7

Q ss_pred             ccccccccceeEEEEccCCCEEEEeeCCCCeEEEeCCCCcEEEEecCCCCceEEEEECCCCCeEEEeeCCCcEEEEECCC
Q 021399            4 ILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVET   83 (313)
Q Consensus         4 ~~l~~h~~~v~~~~fs~~g~~l~s~s~d~~i~iw~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~v~vWd~~~   83 (313)
                      .+|++|.+.|++++|+|++++|++|+.|+.|+|||..+++.+..+..|...|.+++|+|+++++++|+.|+.|++||+.+
T Consensus        49 ~~l~gH~~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iw~~~~  128 (340)
T 1got_B           49 RTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKT  128 (340)
T ss_dssp             EEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECSSSCEEEEEECTTSSEEEEEETTCEEEEEETTT
T ss_pred             eeecCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCCcceEeecCCccEEEEEECCCCCEEEEEeCCCeEEEEECcc
Confidence            36899999999999999999999999999999999999999999999999999999999999999999999999999976


Q ss_pred             Ce----EEEEe-cCCCCeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEccCC
Q 021399           84 GA----QLFTF-NFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLN  158 (313)
Q Consensus        84 ~~----~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~  158 (313)
                      .+    ....+ .+...+..+.|.+++.++....+...      .+|++      ..+..+..+.+|.+.|.++.|+|++
T Consensus       129 ~~~~~~~~~~~~~h~~~v~~~~~~~~~~l~s~s~d~~i------~~wd~------~~~~~~~~~~~h~~~v~~~~~~~~~  196 (340)
T 1got_B          129 REGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTC------ALWDI------ETGQQTTTFTGHTGDVMSLSLAPDT  196 (340)
T ss_dssp             CSBSCEEEEEEECCSSCEEEEEEEETTEEEEEETTSCE------EEEET------TTTEEEEEECCCSSCEEEEEECTTS
T ss_pred             CCCcceeEEEecCCCccEEEEEECCCCcEEEEECCCcE------EEEEC------CCCcEEEEEcCCCCceEEEEECCCC
Confidence            53    22222 34567788888888887766655433      33332      2345667788999999999999999


Q ss_pred             CEEEEeeCCCeEEEEECCCCceeeecccccCceeceEEEEECCCCCEEEEeeCCCcEEEEECCCCcEEEEEecC---Cce
Q 021399          159 RTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTE---RPV  235 (313)
Q Consensus       159 ~~i~t~~~d~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~---~~~  235 (313)
                      +++++|+.|+.|++||++++.++..+.   +|...|++++|+|++++|++|+.||+|++||+++++.+..+.+.   ..+
T Consensus       197 ~~l~sg~~d~~v~~wd~~~~~~~~~~~---~h~~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~~~~v  273 (340)
T 1got_B          197 RLFVSGACDASAKLWDVREGMCRQTFT---GHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGI  273 (340)
T ss_dssp             SEEEEEETTSCEEEEETTTCSEEEEEC---CCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCE
T ss_pred             CEEEEEeCCCcEEEEECCCCeeEEEEc---CCcCCEEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEccCCcccce
Confidence            999999999999999999888776553   68899999999999999999999999999999999888777543   368


Q ss_pred             eEEEeccCCCEEEEcccccCceeEeeccCCCceeeeeeehhhhhhhccccccccceeEEEECCCCCeeEEE
Q 021399          236 NAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKRYGFL  306 (313)
Q Consensus       236 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~fspdgk~~~~~  306 (313)
                      .+++|+|++..+++++. + .            .+++||..+.+.+..+.+|.++|++++|+|||+.++..
T Consensus       274 ~~~~~s~~g~~l~~g~~-d-~------------~i~vwd~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~  330 (340)
T 1got_B          274 TSVSFSKSGRLLLAGYD-D-F------------NCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATG  330 (340)
T ss_dssp             EEEEECTTSSEEEEEET-T-S------------EEEEEETTTCCEEEEEECCSSCEEEEEECTTSSCEEEE
T ss_pred             EEEEECCCCCEEEEECC-C-C------------eEEEEEcccCcEeeEeecCCCcEEEEEEcCCCCEEEEE
Confidence            99999999988776543 2 2            34567766666667788999999999999999998754

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=100.00  E-value=4.8e-42  Score=302.30  Aligned_cols=274  Identities=22%  Similarity=0.286  Sum_probs=232.4

Q ss_pred             ccccccccceeEEEEccCCCEEEEeeCCCCeEEEeCCCCcEEEEecCCCCceEEEEECCCCCeEEEeeCCCcEEEEECCC
Q 021399            4 ILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVET   83 (313)
Q Consensus         4 ~~l~~h~~~v~~~~fs~~g~~l~s~s~d~~i~iw~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~v~vWd~~~   83 (313)
                      ..|.+|..+|++++|+|++++|++|+.|+.|+|||..+++...++++|.+.|.+++|+|++++|++|+.|++|++||+.+
T Consensus       102 ~~l~gh~~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~~~~~l~~h~~~V~~v~~~~~~~~l~sgs~D~~i~iwd~~~  181 (410)
T 1vyh_C          102 YALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQG  181 (410)
T ss_dssp             CEEECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEETTS
T ss_pred             EeecccCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEEeccCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCC
Confidence            36789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CeEEEEec-CCCCeeEEEeecCCeEE-EEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEccCCCEE
Q 021399           84 GAQLFTFN-FDSPARSVDFAVGDKLA-VITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTI  161 (313)
Q Consensus        84 ~~~~~~~~-~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i  161 (313)
                      ++++..+. +...+.++.|.|++..+ .++.+.      .+.+|++.      .+..+..+.+|...+..+.++|++.++
T Consensus       182 ~~~~~~~~~h~~~V~~v~~~p~~~~l~s~s~D~------~i~~wd~~------~~~~~~~~~~h~~~v~~~~~~~~g~~l  249 (410)
T 1vyh_C          182 FECIRTMHGHDHNVSSVSIMPNGDHIVSASRDK------TIKMWEVQ------TGYCVKTFTGHREWVRMVRPNQDGTLI  249 (410)
T ss_dssp             SCEEECCCCCSSCEEEEEECSSSSEEEEEETTS------EEEEEETT------TCCEEEEEECCSSCEEEEEECTTSSEE
T ss_pred             CceeEEEcCCCCCEEEEEEeCCCCEEEEEeCCC------eEEEEECC------CCcEEEEEeCCCccEEEEEECCCCCEE
Confidence            88876654 45678899999876544 444443      23344332      245667788999999999999999999


Q ss_pred             EEeeCCCeEEEEECCCCceeeecccccCceeceEEEEECCC--------------------CCEEEEeeCCCcEEEEECC
Q 021399          162 ISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAAD--------------------GSHFLTGSLDKSAKLWDAR  221 (313)
Q Consensus       162 ~t~~~d~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~--------------------~~~l~s~s~dg~i~iwd~~  221 (313)
                      ++|+.|+.|++||+.++.+...+.   +|...|.+++|+|+                    +.+|++|+.|++|++||++
T Consensus       250 ~s~s~D~~v~vwd~~~~~~~~~~~---~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~  326 (410)
T 1vyh_C          250 ASCSNDQTVRVWVVATKECKAELR---EHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVS  326 (410)
T ss_dssp             EEEETTSCEEEEETTTCCEEEEEC---CCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETT
T ss_pred             EEEcCCCeEEEEECCCCceeeEec---CCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEEECC
Confidence            999999999999999887766553   68899999999996                    6789999999999999999


Q ss_pred             CCcEEEEEe-cCCceeEEEeccCCCEEEEcccccCceeEeeccCCCceeeeeeehhhhhhhccccccccceeEEEECCCC
Q 021399          222 TLELIKTYV-TERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDG  300 (313)
Q Consensus       222 ~~~~~~~~~-~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~fspdg  300 (313)
                      +++++.++. +...+.+++|+|++..+++++. |+             .+++||..+++.+..+.+|...|++++|+|++
T Consensus       327 ~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~-D~-------------~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~  392 (410)
T 1vyh_C          327 TGMCLMTLVGHDNWVRGVLFHSGGKFILSCAD-DK-------------TLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTA  392 (410)
T ss_dssp             TTEEEEEEECCSSCEEEEEECSSSSCEEEEET-TT-------------EEEEECCTTSCCCEEEECCSSCEEEEEECSSS
T ss_pred             CCceEEEEECCCCcEEEEEEcCCCCEEEEEeC-CC-------------eEEEEECCCCceEEEEcCCCCcEEEEEEcCCC
Confidence            999998886 4567999999999988776543 32             35667776677777788999999999999999


Q ss_pred             CeeEEE
Q 021399          301 KRYGFL  306 (313)
Q Consensus       301 k~~~~~  306 (313)
                      +.++..
T Consensus       393 ~~l~sg  398 (410)
T 1vyh_C          393 PYVVTG  398 (410)
T ss_dssp             SCEEEE
T ss_pred             CEEEEE
Confidence            987653

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.7e-41  Score=293.16  Aligned_cols=302  Identities=39%  Similarity=0.689  Sum_probs=246.8

Q ss_pred             CcccccccccceeEEEEccCCCEEEEeeCCCCeEEEeCCCCcEEEEecCCCCceEEEEECCCCCeEEEeeCCCcEEEEEC
Q 021399            2 RPILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNV   81 (313)
Q Consensus         2 ~~~~l~~h~~~v~~~~fs~~g~~l~s~s~d~~i~iw~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~v~vWd~   81 (313)
                      +++.|.+|.+.|.+++|+|++++|++++.|+.|++||+.+++.+.++.+|.+.|.+++|+|++++|++++.|++|++||+
T Consensus        24 ~~~~l~~h~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~  103 (369)
T 3zwl_B           24 KAIKLTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSIDVDCFTKYCVTGSADYSIKLWDV  103 (369)
T ss_dssp             EEEEEECCSSCEEEEEECTTSCEEEEEESSSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEET
T ss_pred             ccEEEEEeeceEEEEEEcCCCCEEEEEeCCCEEEEEeCCCchhhhhhhhcCCcEEEEEEcCCCCEEEEEeCCCeEEEEEC
Confidence            57789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCeEEEEecCCCCeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCC-----CCceEEEecCCCC--ceEEEEE
Q 021399           82 ETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQ-----GGESVLILKGPQG--RINRAVW  154 (313)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~--~i~~~~~  154 (313)
                      .+++.+..+....++..+.|.+++..++............+.++++.......     .......+..|.+  .+..+.|
T Consensus       104 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  183 (369)
T 3zwl_B          104 SNGQCVATWKSPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAATVAGW  183 (369)
T ss_dssp             TTCCEEEEEECSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCEEEEEE
T ss_pred             CCCcEEEEeecCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCCcCccceeEEEE
Confidence            99998888888888999999998777666544321222334445544322111     1122334445555  8999999


Q ss_pred             ccCCCEEEEeeCCCeEEEEECCC-CceeeecccccCceeceEEEEECCCCCEEEEeeCCCcEEEEECCCCcEEEEEecCC
Q 021399          155 GPLNRTIISAGEDAIVRIWDTET-GKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTER  233 (313)
Q Consensus       155 ~~~~~~i~t~~~d~~i~lwd~~~-~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~  233 (313)
                      +|+++.+++++.|+.|++||+.+ .+.+..+.   .|...|.+++|+|++.+|++++.|+.|++||+++++++..+....
T Consensus       184 ~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~---~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~  260 (369)
T 3zwl_B          184 STKGKYIIAGHKDGKISKYDVSNNYEYVDSID---LHEKSISDMQFSPDLTYFITSSRDTNSFLVDVSTLQVLKKYETDC  260 (369)
T ss_dssp             CGGGCEEEEEETTSEEEEEETTTTTEEEEEEE---CCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSS
T ss_pred             cCCCCEEEEEcCCCEEEEEECCCCcEeEEEEe---cCCCceeEEEECCCCCEEEEecCCceEEEEECCCCceeeeecCCC
Confidence            99999999999999999999988 55555443   588899999999999999999999999999999999999998888


Q ss_pred             ceeEEEeccCCCEEEEcccccCceeEeeccCCCceeeeeeehhhhhhhccccccccceeEEEECCCCCeeEEE
Q 021399          234 PVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKRYGFL  306 (313)
Q Consensus       234 ~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~fspdgk~~~~~  306 (313)
                      .+..++|+|++..++++++++...+...+...+...+++||..+++.+..+.+|.+.|++++|+|||+.++..
T Consensus       261 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~  333 (369)
T 3zwl_B          261 PLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEEEIGRVQGHFGPLNTVAISPQGTSYASG  333 (369)
T ss_dssp             CEEEEEECSSSSEEEEEECCC-------------CEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEE
T ss_pred             CceeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEecCCCcchhheecccCcEEEEEECCCCCEEEEE
Confidence            9999999999999999887776667667777777789999999888888999999999999999999988765

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=100.00  E-value=1.7e-41  Score=289.29  Aligned_cols=274  Identities=21%  Similarity=0.291  Sum_probs=226.1

Q ss_pred             cccccccceeEEEEccC----CCEEEEeeCCCCeEEEeCCCCcE--EEEecCCCCceEEEEECCCCCeEEEeeCCCcEEE
Q 021399            5 LMKGHERPLTYLKYNKD----GDLLFSCAKDHTPTVWFADNGER--LGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKL   78 (313)
Q Consensus         5 ~l~~h~~~v~~~~fs~~----g~~l~s~s~d~~i~iw~~~~~~~--~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~v~v   78 (313)
                      .+++|.+.|++++|+|+    +++|+||+.|++|+||+..+++.  ...+++|...|.+++|++++.+++|++.|++|++
T Consensus        27 ~~~~H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~~~~~~l~gh~~~v~~~~~~~~~~~l~s~s~D~~i~l  106 (321)
T 3ow8_A           27 QEQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDISHTLPIAASSSLDAHIRL  106 (321)
T ss_dssp             ETTSSSSCEEEEEEC-------CEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECSSSSEEEEEETTSEEEE
T ss_pred             ecccCCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCeeeeeeeccCCCCEEEEEECCCCCEEEEEeCCCcEEE
Confidence            46799999999999985    67999999999999999887753  5578999999999999999999999999999999


Q ss_pred             EECCCCeEEEEecC-CCCeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEccC
Q 021399           79 WNVETGAQLFTFNF-DSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPL  157 (313)
Q Consensus        79 Wd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~  157 (313)
                      ||+.+++.+..+.. ...+..+.|+|++..++....     .+.+.++++      ..+.....+..+...+.+++|+|+
T Consensus       107 Wd~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~g~~-----dg~v~i~~~------~~~~~~~~~~~~~~~v~~~~~spd  175 (321)
T 3ow8_A          107 WDLENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTH-----VGKVNIFGV------ESGKKEYSLDTRGKFILSIAYSPD  175 (321)
T ss_dssp             EETTTTEEEEEEECCTTCCCCEEECTTSSEEEEECT-----TSEEEEEET------TTCSEEEEEECSSSCEEEEEECTT
T ss_pred             EECCCCCEEEEEeCCCccEEEEEECCCCCEEEEEcC-----CCcEEEEEc------CCCceeEEecCCCceEEEEEECCC
Confidence            99999988776653 446677889987766655432     122233332      123455667778888999999999


Q ss_pred             CCEEEEeeCCCeEEEEECCCCceeeecccccCceeceEEEEECCCCCEEEEeeCCCcEEEEECCCCcEEEEEe-cCCcee
Q 021399          158 NRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYV-TERPVN  236 (313)
Q Consensus       158 ~~~i~t~~~d~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~-~~~~~~  236 (313)
                      ++++++|+.|+.|++||+.+++++..+.   +|...|.+++|+|++.+|++|+.|++|++||+++++++.++. +...+.
T Consensus       176 g~~lasg~~dg~i~iwd~~~~~~~~~~~---~h~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~  252 (321)
T 3ow8_A          176 GKYLASGAIDGIINIFDIATGKLLHTLE---GHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHASWVL  252 (321)
T ss_dssp             SSEEEEEETTSCEEEEETTTTEEEEEEC---CCSSCCCEEEECTTSCEEEEECTTSCEEEEETTTCCEEEEECCCSSCEE
T ss_pred             CCEEEEEcCCCeEEEEECCCCcEEEEEc---ccCCceeEEEEcCCCCEEEEEcCCCeEEEEECCCcceeEEEcCCCCceE
Confidence            9999999999999999999988776653   688999999999999999999999999999999999888876 456799


Q ss_pred             EEEeccCCCEEEEcccccCceeEeeccCCCceeeeeeehhhhhhhccccccccceeEEEECCCCCeeEEE
Q 021399          237 AVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKRYGFL  306 (313)
Q Consensus       237 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~fspdgk~~~~~  306 (313)
                      +++|+|++..+++++. |+             .+++||..+++++..+.+|.+.|++++|+|||++++..
T Consensus       253 ~~~~sp~~~~l~s~s~-D~-------------~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~s~  308 (321)
T 3ow8_A          253 NVAFCPDDTHFVSSSS-DK-------------SVKVWDVGTRTCVHTFFDHQDQVWGVKYNGNGSKIVSV  308 (321)
T ss_dssp             EEEECTTSSEEEEEET-TS-------------CEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEE
T ss_pred             EEEECCCCCEEEEEeC-CC-------------cEEEEeCCCCEEEEEEcCCCCcEEEEEECCCCCEEEEE
Confidence            9999999988766543 32             35678877777888888999999999999999987754

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=100.00  E-value=1.6e-41  Score=287.20  Aligned_cols=272  Identities=15%  Similarity=0.208  Sum_probs=225.9

Q ss_pred             ccccccccceeEEEEccCCCEEEEeeCCCCeEEEeCCCCcEEEEecCCCCceEEEEECCCCCeEEEeeCCCcEEEEECCC
Q 021399            4 ILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVET   83 (313)
Q Consensus         4 ~~l~~h~~~v~~~~fs~~g~~l~s~s~d~~i~iw~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~v~vWd~~~   83 (313)
                      .++.+|.+.|.+++|+|++++|++++.|+.|++||+++++.+..+.+|..+|.+++|+|+++++++|+.|++|++||+.+
T Consensus         7 ~~~~~h~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~vwd~~~   86 (304)
T 2ynn_A            7 KTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNT   86 (304)
T ss_dssp             EEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTT
T ss_pred             EeecCCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCceeEEeeccCCcEEEEEEeCCCCEEEEECCCCEEEEEECCC
Confidence            47899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CeEEEEec-CCCCeeEEEeecCCeEEEE-ECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEcc-CCCE
Q 021399           84 GAQLFTFN-FDSPARSVDFAVGDKLAVI-TTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGP-LNRT  160 (313)
Q Consensus        84 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~  160 (313)
                      ++.+..+. +...+.++.|+|++..++. +.+.      .+++|++..     .......+.+|...|.+++|+| ++..
T Consensus        87 ~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~------~v~lWd~~~-----~~~~~~~~~~h~~~v~~v~~~p~~~~~  155 (304)
T 2ynn_A           87 GEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDL------TVKLWNWEN-----NWALEQTFEGHEHFVMCVAFNPKDPST  155 (304)
T ss_dssp             CCEEEEEECCSSCEEEEEECSSSSEEEEEETTS------CEEEEEGGG-----TTEEEEEECCCCSCEEEEEECTTCTTE
T ss_pred             CcEEEEEeCCCCcEEEEEEcCCCCEEEEECCCC------eEEEEECCC-----CcchhhhhcccCCcEEEEEECCCCCCE
Confidence            98877665 4667899999997765544 3333      334444321     1234456789999999999999 5689


Q ss_pred             EEEeeCCCeEEEEECCCCceeeecccccCceeceEEEEECC--CCCEEEEeeCCCcEEEEECCCCcEEEEEe-cCCceeE
Q 021399          161 IISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAA--DGSHFLTGSLDKSAKLWDARTLELIKTYV-TERPVNA  237 (313)
Q Consensus       161 i~t~~~d~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~--~~~~l~s~s~dg~i~iwd~~~~~~~~~~~-~~~~~~~  237 (313)
                      +++|+.|+.|++||+.+......+.  .+|...+..++++|  ++.+|++|+.|++|++||+++++++.++. +...+.+
T Consensus       156 l~sgs~D~~v~iwd~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~h~~~v~~  233 (304)
T 2ynn_A          156 FASGCLDRTVKVWSLGQSTPNFTLT--TGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSF  233 (304)
T ss_dssp             EEEEETTSEEEEEETTCSSCSEEEE--CCCTTCEEEEEECCSTTCCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEE
T ss_pred             EEEEeCCCeEEEEECCCCCccceec--cCCcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCCccceeeCCCCCCEEE
Confidence            9999999999999998766543332  34667788888876  77899999999999999999999998886 4567999


Q ss_pred             EEeccCCCEEEEcccccCceeEeeccCCCceeeeeeehhhhhhhccccccccceeEEEECCCCCe
Q 021399          238 VTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKR  302 (313)
Q Consensus       238 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~fspdgk~  302 (313)
                      ++|+|+++.+++++ .|+             .+++||..+++.+..+..|.+.|++++|+|+|+.
T Consensus       234 ~~~~p~~~~l~s~s-~Dg-------------~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  284 (304)
T 2ynn_A          234 AVFHPTLPIIISGS-EDG-------------TLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRK  284 (304)
T ss_dssp             EEECSSSSEEEEEE-TTS-------------CEEEEETTTCCEEEEECCSSSSEEEEEECTTCGG
T ss_pred             EEECCCCCEEEEEc-CCC-------------eEEEEECCCCceeeeccCCCccEEEEEECCCCCc
Confidence            99999998766543 332             3567777777777788889999999999999874

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=100.00  E-value=2.2e-40  Score=286.24  Aligned_cols=274  Identities=18%  Similarity=0.270  Sum_probs=224.8

Q ss_pred             ccccccccceeEEEEccCCCEEEEeeCCCCeEEEeCCCCcEEEEecCCCCceEEEEECCCCCeEEEeeCCCcEEEEECCC
Q 021399            4 ILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVET   83 (313)
Q Consensus         4 ~~l~~h~~~v~~~~fs~~g~~l~s~s~d~~i~iw~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~v~vWd~~~   83 (313)
                      .+|.+|.+.|++++|+|++++|+||+.|++|+|||..+++....+..|...|.+++|+|+++.+++|+.|+++++|++..
T Consensus        58 ~~l~gH~~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~~~~v~~~~~sp~g~~lasg~~d~~i~v~~~~~  137 (354)
T 2pbi_B           58 RTLKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPSGCAIACGGLDNKCSVYPLTF  137 (354)
T ss_dssp             EEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCEEEECTTSSEEEEESTTSEEEEEECCC
T ss_pred             EEecCCCCeEEEEEECCCCCEEEEEeCCCeEEEEECCCCCcceEEecCCCCEEEEEECCCCCEEEEeeCCCCEEEEEEec
Confidence            47899999999999999999999999999999999999999999999999999999999999999999999999999864


Q ss_pred             Ce-------EEEEecCCCCeeEEEeecCCe-EEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEc
Q 021399           84 GA-------QLFTFNFDSPARSVDFAVGDK-LAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWG  155 (313)
Q Consensus        84 ~~-------~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~  155 (313)
                      ..       ......+...+..+.|.+++. ++.++.+.      .+.+|++      ..+..+..+.+|...+..+.++
T Consensus       138 ~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~D~------~v~lwd~------~~~~~~~~~~~h~~~v~~~~~~  205 (354)
T 2pbi_B          138 DKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDG------TCALWDV------ESGQLLQSFHGHGADVLCLDLA  205 (354)
T ss_dssp             CTTCCSGGGCEEEEECSSCEEEEEECSSSSEEEEEETTS------EEEEEET------TTCCEEEEEECCSSCEEEEEEC
T ss_pred             cccccccccceeeeccCCcEEEEEEeCCCCEEEEEeCCC------cEEEEeC------CCCeEEEEEcCCCCCeEEEEEE
Confidence            31       112223556778888888664 44444443      3344443      2345677888999999999998


Q ss_pred             c--CCCEEEEeeCCCeEEEEECCCCceeeecccccCceeceEEEEECCCCCEEEEeeCCCcEEEEECCCCcEEEEEecC-
Q 021399          156 P--LNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTE-  232 (313)
Q Consensus       156 ~--~~~~i~t~~~d~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~-  232 (313)
                      |  +++.|++|+.|+.|++||+++++++..+.   +|...|.+++|+|++++|++|+.|++|++||+++.+.+..+... 
T Consensus       206 ~~~~g~~l~sgs~Dg~v~~wd~~~~~~~~~~~---~h~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~~~  282 (354)
T 2pbi_B          206 PSETGNTFVSGGCDKKAMVWDMRSGQCVQAFE---THESDVNSVRYYPSGDAFASGSDDATCRLYDLRADREVAIYSKES  282 (354)
T ss_dssp             CCSSCCEEEEEETTSCEEEEETTTCCEEEEEC---CCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTT
T ss_pred             eCCCCCEEEEEeCCCeEEEEECCCCcEEEEec---CCCCCeEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCC
Confidence            7  46899999999999999999988776653   68899999999999999999999999999999998877766432 


Q ss_pred             --CceeEEEeccCCCEEEEcccccCceeEeeccCCCceeeeeeehhhhhhhccccccccceeEEEECCCCCeeEEE
Q 021399          233 --RPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKRYGFL  306 (313)
Q Consensus       233 --~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~fspdgk~~~~~  306 (313)
                        ..+.+++|+|++..+++++. |+             .+++||..+++.+..+.+|.++|++++|+|||+.|+..
T Consensus       283 ~~~~~~~~~~s~~g~~l~~g~~-d~-------------~i~vwd~~~~~~~~~l~~h~~~v~~l~~spdg~~l~sg  344 (354)
T 2pbi_B          283 IIFGASSVDFSLSGRLLFAGYN-DY-------------TINVWDVLKGSRVSILFGHENRVSTLRVSPDGTAFCSG  344 (354)
T ss_dssp             CCSCEEEEEECTTSSEEEEEET-TS-------------CEEEEETTTCSEEEEECCCSSCEEEEEECTTSSCEEEE
T ss_pred             cccceeEEEEeCCCCEEEEEEC-CC-------------cEEEEECCCCceEEEEECCCCcEEEEEECCCCCEEEEE
Confidence              35789999999987776543 22             35667766666667788999999999999999998764

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=100.00  E-value=2.5e-40  Score=281.81  Aligned_cols=279  Identities=24%  Similarity=0.339  Sum_probs=219.8

Q ss_pred             cccccccceeEEEEccCC-CEEEEeeCCCCeEEEeCCC-----CcEEEEecCCCCceEEEEECCCCCeEEEeeCCCcEEE
Q 021399            5 LMKGHERPLTYLKYNKDG-DLLFSCAKDHTPTVWFADN-----GERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKL   78 (313)
Q Consensus         5 ~l~~h~~~v~~~~fs~~g-~~l~s~s~d~~i~iw~~~~-----~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~v~v   78 (313)
                      +|.+|.+.|.+++|+|++ ++|+||+.|++|++|++..     +..+.++++|...|.+++|+|++++++||+.|++|++
T Consensus        12 ~l~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~v~~   91 (319)
T 3frx_A           12 TLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRL   91 (319)
T ss_dssp             EECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEE
T ss_pred             EEccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCccccccceEEeCCcccEEEEEECCCCCEEEEEeCCCEEEE
Confidence            688999999999999965 8999999999999998764     3457789999999999999999999999999999999


Q ss_pred             EECCCCeEEEEec-CCCCeeEEEeecCCeEEEE-ECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEcc
Q 021399           79 WNVETGAQLFTFN-FDSPARSVDFAVGDKLAVI-TTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGP  156 (313)
Q Consensus        79 Wd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~  156 (313)
                      ||+.+++.+..+. +..++.++.|.++...++. +.+..      +++|++       .+..+..+.+|...+..+.+.|
T Consensus        92 wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~------i~vwd~-------~~~~~~~~~~h~~~v~~~~~~~  158 (319)
T 3frx_A           92 WDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKT------IKVWTI-------KGQCLATLLGHNDWVSQVRVVP  158 (319)
T ss_dssp             EETTTTEEEEEEECCSSCEEEEEECTTSCEEEEEETTSC------EEEEET-------TSCEEEEECCCSSCEEEEEECC
T ss_pred             EECCCCCeeEEEccCCCcEEEEEEcCCCCEEEEEeCCCe------EEEEEC-------CCCeEEEEeccCCcEEEEEEcc
Confidence            9999998877664 5678889999987655444 33433      334433       1345667788999999999998


Q ss_pred             CC------CEEEEeeCCCeEEEEECCCCceeeecccccCceeceEEEEECCCCCEEEEeeCCCcEEEEECCCCcEEEEEe
Q 021399          157 LN------RTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYV  230 (313)
Q Consensus       157 ~~------~~i~t~~~d~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~  230 (313)
                      ..      ..+++++.|+.|++||+++.+....+   .+|...|.+++|+|++.+|++|+.||+|++||+++++++.++.
T Consensus       159 ~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~---~~h~~~v~~~~~sp~g~~l~s~~~dg~i~iwd~~~~~~~~~~~  235 (319)
T 3frx_A          159 NEKADDDSVTIISAGNDKMVKAWNLNQFQIEADF---IGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLS  235 (319)
T ss_dssp             C------CCEEEEEETTSCEEEEETTTTEEEEEE---CCCCSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEE
T ss_pred             CCCCCCCccEEEEEeCCCEEEEEECCcchhheee---cCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEec
Confidence            54      48999999999999999987766554   3699999999999999999999999999999999999999988


Q ss_pred             cCCceeEEEeccCCCEEEEcccccCceeEeeccCCCceeeeeeehhhhhhhccccccccceeEEEECCCCCeeEEE
Q 021399          231 TERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKRYGFL  306 (313)
Q Consensus       231 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~fspdgk~~~~~  306 (313)
                      ....+.+++|+|++..++++.. ++  +.+|+...+... ..+   ..........|...|.+++|||||++++.-
T Consensus       236 ~~~~v~~~~~sp~~~~la~~~~-~~--i~v~~~~~~~~~-~~~---~~~~~~~~~~~~~~v~~~~~spdg~~l~sg  304 (319)
T 3frx_A          236 AQDEVFSLAFSPNRYWLAAATA-TG--IKVFSLDPQYLV-DDL---RPEFAGYSKAAEPHAVSLAWSADGQTLFAG  304 (319)
T ss_dssp             CCSCEEEEEECSSSSEEEEEET-TE--EEEEEETTEEEE-EEE---CCCCTTCCGGGCCCEEEEEECTTSSEEEEE
T ss_pred             CCCcEEEEEEcCCCCEEEEEcC-CC--cEEEEeCcCeee-ecc---CccccccccCcCcceeEEEECCCCCEEEEe
Confidence            8888999999999987766543 22  333333221110 000   011111234577889999999999998753

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=100.00  E-value=6e-39  Score=272.17  Aligned_cols=275  Identities=23%  Similarity=0.358  Sum_probs=224.6

Q ss_pred             cccccccceeEEEEccCCCEEEEeeCCCCeEEEeCCCCcEEEEecCCCCceEEEEECCCCCeEEEeeCCCcEEEEECCCC
Q 021399            5 LMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETG   84 (313)
Q Consensus         5 ~l~~h~~~v~~~~fs~~g~~l~s~s~d~~i~iw~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~v~vWd~~~~   84 (313)
                      .+.+|.++|.+++|+|++++|++++.|+.|++|+..+++....+.+|...|.+++|+|++++|++++.|++|++||+.++
T Consensus        18 ~~~gh~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~   97 (312)
T 4ery_A           18 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSG   97 (312)
T ss_dssp             EECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTC
T ss_pred             EEcccCCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcccchhhccCCCceEEEEEcCCCCEEEEECCCCEEEEEECCCC
Confidence            67899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eEEEEec-CCCCeeEEEeecCCeEEEE-ECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEccCCCEEE
Q 021399           85 AQLFTFN-FDSPARSVDFAVGDKLAVI-TTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTII  162 (313)
Q Consensus        85 ~~~~~~~-~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~  162 (313)
                      +.+..+. +...+..+.|.+++..++. ..+.      .+.++++.      .+..+..+..|...+..+.|+|++++++
T Consensus        98 ~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~------~i~iwd~~------~~~~~~~~~~~~~~v~~~~~~~~~~~l~  165 (312)
T 4ery_A           98 KCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDE------SVRIWDVK------TGKCLKTLPAHSDPVSAVHFNRDGSLIV  165 (312)
T ss_dssp             CEEEEEECCSSCEEEEEECSSSSEEEEEETTS------CEEEEETT------TCCEEEEECCCSSCEEEEEECTTSSEEE
T ss_pred             cEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCC------cEEEEECC------CCEEEEEecCCCCcEEEEEEcCCCCEEE
Confidence            8877665 4567888899987655544 3333      23344332      2345667788999999999999999999


Q ss_pred             EeeCCCeEEEEECCCCceeeecccccCceeceEEEEECCCCCEEEEeeCCCcEEEEECCCCcEEEEEecCC-c--eeEEE
Q 021399          163 SAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTER-P--VNAVT  239 (313)
Q Consensus       163 t~~~d~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~-~--~~~~~  239 (313)
                      +++.|+.|++||+.+++.+..+.  ..+...+..++|+|++++|++++.|+.|++||+++++++..+.... .  .....
T Consensus       166 ~~~~d~~i~~wd~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~  243 (312)
T 4ery_A          166 SSSYDGLCRIWDTASGQCLKTLI--DDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFAN  243 (312)
T ss_dssp             EEETTSCEEEEETTTCCEEEEEC--CSSCCCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEECSSCCSSSCCCEE
T ss_pred             EEeCCCcEEEEECCCCceeeEEe--ccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEEecCCceEEEEEE
Confidence            99999999999999888766543  2466789999999999999999999999999999999988875322 1  22344


Q ss_pred             eccCCCEEEEcccccCceeEeeccCCCceeeeeeehhhhhhhccccccccceeEEEECCCCCeeEEE
Q 021399          240 MSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKRYGFL  306 (313)
Q Consensus       240 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~fspdgk~~~~~  306 (313)
                      +++.....+++++.|+             .+++||..+++.+..+.+|...|.+++|+|+++.++..
T Consensus       244 ~~~~~~~~l~sg~~dg-------------~i~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~  297 (312)
T 4ery_A          244 FSVTGGKWIVSGSEDN-------------LVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASA  297 (312)
T ss_dssp             EECSSSCEEEECCTTS-------------CEEEEETTTCCEEEEECCCSSCEEEEEECSSSSEEEEE
T ss_pred             EEeCCCcEEEEECCCC-------------EEEEEECCCchhhhhhhccCCcEEEEeecCcCCceEEE
Confidence            5544444455555443             35667777777777888999999999999999998765

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=100.00  E-value=1.4e-40  Score=290.18  Aligned_cols=273  Identities=22%  Similarity=0.319  Sum_probs=210.0

Q ss_pred             ccccccccceeEEEEccCCCEEEEeeCCCCeEEEeCCCCcEEEEecCCCCceEEEEECCCCCeEEEeeCCCcEEEEECCC
Q 021399            4 ILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVET   83 (313)
Q Consensus         4 ~~l~~h~~~v~~~~fs~~g~~l~s~s~d~~i~iw~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~v~vWd~~~   83 (313)
                      .+|++|.+.|++++|+|++++|+||+.|++|+|||..+++...++++|...|.+++|+|+++++++|+.|+++++||+.+
T Consensus        60 ~~l~gH~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~h~~~v~~~~~s~~g~~las~~~d~~v~iw~~~~  139 (380)
T 3iz6_a           60 RTLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKLHCPWVMECAFAPNGQSVACGGLDSACSIFNLSS  139 (380)
T ss_dssp             EEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECCCTTCCCCEECTTSSEEEECCSSSCCEEEECCC
T ss_pred             ecccccccEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCccceEEecCCCCEEEEEECCCCCEEEEeeCCCcEEEEECCC
Confidence            36899999999999999999999999999999999999999999999999999999999999999999999999999865


Q ss_pred             CeE-------EEEe-cCCCCeeEEEeecC--CeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEe-----cCCCCc
Q 021399           84 GAQ-------LFTF-NFDSPARSVDFAVG--DKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLIL-----KGPQGR  148 (313)
Q Consensus        84 ~~~-------~~~~-~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~  148 (313)
                      ...       ...+ .+...+..+.|.+.  ..++.++.+...      .+|++.      .+..+..+     .+|...
T Consensus       140 ~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i------~~wd~~------~~~~~~~~~~~~~~~h~~~  207 (380)
T 3iz6_a          140 QADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTC------VLWDVT------TGQRISIFGSEFPSGHTAD  207 (380)
T ss_dssp             CSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCE------EEECTT------TCCEEEEECCCSSSSCCSC
T ss_pred             CccccCCccceeeccCCCcceEEEEEecCCCCEEEEECCCCcE------EEEEcC------CCcEEEEeecccCCCCccC
Confidence            321       1111 12334555666663  234444444333      333321      22333333     578889


Q ss_pred             eEEEEEcc-CCCEEEEeeCCCeEEEEECCC-CceeeecccccCceeceEEEEECCCCCEEEEeeCCCcEEEEECCCCcEE
Q 021399          149 INRAVWGP-LNRTIISAGEDAIVRIWDTET-GKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELI  226 (313)
Q Consensus       149 i~~~~~~~-~~~~i~t~~~d~~i~lwd~~~-~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~  226 (313)
                      +.++.+++ +++.+++|+.|+.|++||++. +..+..+   .+|...|.+++|+|++++|++|+.||+|++||+++++++
T Consensus       208 v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~~~~~~~---~~h~~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~~~~  284 (380)
T 3iz6_a          208 VLSLSINSLNANMFISGSCDTTVRLWDLRITSRAVRTY---HGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQL  284 (380)
T ss_dssp             EEEEEECSSSCCEEEEEETTSCEEEEETTTTCCCCEEE---CCCSSCCCEEEECTTSSEEEEECSSSCEEEEETTTTEEE
T ss_pred             eEEEEeecCCCCEEEEEECCCeEEEEECCCCCcceEEE---CCcCCCeEEEEEecCCCeEEEEcCCCeEEEEECCCCcEE
Confidence            99999976 788999999999999999974 3444443   369999999999999999999999999999999999988


Q ss_pred             EEEecC--------CceeEEEeccCCCEEEEcccccCceeEeeccCCCceeeeeeehhhhhhhccc----cccccceeEE
Q 021399          227 KTYVTE--------RPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGV----KGHFGPINAL  294 (313)
Q Consensus       227 ~~~~~~--------~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~h~~~V~~~  294 (313)
                      ..+...        ..+.+++|+|++..+++++. + +.+.+||            ...++.+..+    .+|.++|+++
T Consensus       285 ~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~-d-g~i~vwd------------~~~~~~~~~~~~~~~~h~~~v~~l  350 (380)
T 3iz6_a          285 QVYNREPDRNDNELPIVTSVAFSISGRLLFAGYS-N-GDCYVWD------------TLLAEMVLNLGTLQNSHEGRISCL  350 (380)
T ss_dssp             EEECCCCSSSCCSSCSCSEEEECSSSSEEEEECT-T-SCEEEEE------------TTTCCEEEEECCSCSSCCCCCCEE
T ss_pred             EEecccccccccccCceEEEEECCCCCEEEEEEC-C-CCEEEEE------------CCCCceEEEEecccCCCCCceEEE
Confidence            877532        13789999999998776543 2 3344444            4333332222    5899999999


Q ss_pred             EECCCCCeeEE
Q 021399          295 AFNPDGKRYGF  305 (313)
Q Consensus       295 ~fspdgk~~~~  305 (313)
                      +|+|||+.++.
T Consensus       351 ~~s~dg~~l~s  361 (380)
T 3iz6_a          351 GLSSDGSALCT  361 (380)
T ss_dssp             EECSSSSEEEE
T ss_pred             EECCCCCEEEE
Confidence            99999998765

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=100.00  E-value=2.5e-38  Score=272.07  Aligned_cols=282  Identities=22%  Similarity=0.304  Sum_probs=211.1

Q ss_pred             cccccccceeEEEE-----cc-CCCEEEEeeCCCCeEEEeCCCC-------cEEEEecCCCCceEEEEECCCCCeEEEee
Q 021399            5 LMKGHERPLTYLKY-----NK-DGDLLFSCAKDHTPTVWFADNG-------ERLGTYRGHNGAVWCCDVSRDSMTLITGS   71 (313)
Q Consensus         5 ~l~~h~~~v~~~~f-----s~-~g~~l~s~s~d~~i~iw~~~~~-------~~~~~~~~H~~~V~~~~~~~~~~~l~s~s   71 (313)
                      +|++|.+.|++++|     ++ ++++|+||+.|++|++||+.+.       .....+.+|...|.+++|+|++++++||+
T Consensus        16 ~l~gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~l~s~s   95 (343)
T 2xzm_R           16 ILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCFAISSS   95 (343)
T ss_dssp             EEECCSSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSSTTEEEEEE
T ss_pred             eeccchhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEECCCCCEEEEEc
Confidence            68999999999999     76 9999999999999999998753       45678999999999999999999999999


Q ss_pred             CCCcEEEEECCCCeEEEEec-CCCCeeEEEeecCCeEEE-EECCCceeccccceeeeeeeCCCCCCCceEEEe---cCCC
Q 021399           72 ADQTAKLWNVETGAQLFTFN-FDSPARSVDFAVGDKLAV-ITTDPFMELNSAIHVKRIARDPADQGGESVLIL---KGPQ  146 (313)
Q Consensus        72 ~D~~v~vWd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~  146 (313)
                      .|++|++||+++++.+..+. +...+.++.|+|++..++ +..+..      +.+|++.       +......   .+|.
T Consensus        96 ~D~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~d~~------i~~wd~~-------~~~~~~~~~~~~~~  162 (343)
T 2xzm_R           96 WDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAERE------IKLWNIL-------GECKFSSAEKENHS  162 (343)
T ss_dssp             TTSEEEEEETTSSCEEEEEECCCSCEEEEEECSSTTEEEEEETTSC------EEEEESS-------SCEEEECCTTTSCS
T ss_pred             CCCcEEEEECCCCcEEEEEcCCCCcEEEEEECCCCCEEEEEcCCCE------EEEEecc-------CCceeeeecccCCC
Confidence            99999999999998876664 567889999998765444 444433      3334331       1111122   2677


Q ss_pred             CceEEEEEccCC----------CEEEEeeCCCeEEEEECCCCceeeecccccCceeceEEEEECCCCCEEEEeeCCCcEE
Q 021399          147 GRINRAVWGPLN----------RTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAK  216 (313)
Q Consensus       147 ~~i~~~~~~~~~----------~~i~t~~~d~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~dg~i~  216 (313)
                      ..+.++.|+|.+          .++++++.|+.|++||.. ......+   .+|...|.+++|+|+|++|++|+.||+|+
T Consensus       163 ~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~-~~~~~~~---~~h~~~v~~~~~s~~g~~l~sgs~dg~v~  238 (343)
T 2xzm_R          163 DWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNTN-FQIRYTF---KAHESNVNHLSISPNGKYIATGGKDKKLL  238 (343)
T ss_dssp             SCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEETT-TEEEEEE---ECCSSCEEEEEECTTSSEEEEEETTCEEE
T ss_pred             ceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEcCC-CceeEEE---cCccccceEEEECCCCCEEEEEcCCCeEE
Confidence            889999999886          789999999999999954 3333333   36889999999999999999999999999


Q ss_pred             EEECC-CCcEEEEEecCCceeEEEeccCCCEEEEcccccCceeEeeccCCCceee-eeeehhhhhhhccccccccceeEE
Q 021399          217 LWDAR-TLELIKTYVTERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEA-KFFDKILQEEIGGVKGHFGPINAL  294 (313)
Q Consensus       217 iwd~~-~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~h~~~V~~~  294 (313)
                      +||++ ...+...+.....+.+++|+|++..++ ++ .+. .+.+|+...+.... ..+............+|...|+++
T Consensus       239 iwd~~~~~~~~~~~~~~~~v~~v~~sp~~~~la-~~-~d~-~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~  315 (343)
T 2xzm_R          239 IWDILNLTYPQREFDAGSTINQIAFNPKLQWVA-VG-TDQ-GVKIFNLMTQSKAPVCTIEAEPITKAEGQKGKNPQCTSL  315 (343)
T ss_dssp             EEESSCCSSCSEEEECSSCEEEEEECSSSCEEE-EE-ESS-CEEEEESSSCCSCSEEECCCCSGGGBTTBCCSCCCEEEE
T ss_pred             EEECCCCcccceeecCCCcEEEEEECCCCCEEE-EE-CCC-CEEEEEeCCCCCCceEEeecCcchhhhhhcCCCCceEEE
Confidence            99994 444555555566799999999987554 33 332 35566654432211 011111111122345799999999


Q ss_pred             EECCCCCeeEEE
Q 021399          295 AFNPDGKRYGFL  306 (313)
Q Consensus       295 ~fspdgk~~~~~  306 (313)
                      +|+|||+.++..
T Consensus       316 ~~sp~g~~l~sg  327 (343)
T 2xzm_R          316 AWNALGKKLFAG  327 (343)
T ss_dssp             EECSSSCCEEEE
T ss_pred             EECCCCCeEEEe
Confidence            999999988653

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=100.00  E-value=1.5e-38  Score=293.67  Aligned_cols=287  Identities=18%  Similarity=0.169  Sum_probs=226.9

Q ss_pred             cccccccceeEEEEccCCCEEEEeeCCCCeEEEeCCCCcEEEEecCCCCceEEEEECCCCCeEEEeeCCCcEEEEECCCC
Q 021399            5 LMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETG   84 (313)
Q Consensus         5 ~l~~h~~~v~~~~fs~~g~~l~s~s~d~~i~iw~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~v~vWd~~~~   84 (313)
                      ....+.+.+.+++|+|||++|++++ ++.|++|++.+++...++.+|.+.|++++|+|+|++++||+.|++|+|||+.++
T Consensus        13 ~~~~~~g~~~~~~~spdg~~l~~~~-~~~v~l~~~~~~~~~~~~~~h~~~v~~~~~spdg~~lasg~~d~~v~lWd~~~~   91 (611)
T 1nr0_A           13 LPRTARGTAVVLGNTPAGDKIQYCN-GTSVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQT   91 (611)
T ss_dssp             CCCCCTTCCCCCEECTTSSEEEEEE-TTEEEEEETTCSSCCEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSST
T ss_pred             CCCcccCceeEEeeCCCCCEEEeCC-CCEEEEecCCCcccCeEecCCCCceEEEEECCCCcEEEEEeCCCCEEEeECCCC
Confidence            4445677788999999999999998 569999999999999999999999999999999999999999999999999654


Q ss_pred             e--EEEEe-cCCCCeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEccCCC-E
Q 021399           85 A--QLFTF-NFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNR-T  160 (313)
Q Consensus        85 ~--~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~  160 (313)
                      +  ....+ .+..++..+.|+|+++.++....... ....+..++        .+.....+.+|...|.++.|+|++. .
T Consensus        92 ~~~~~~~~~~~~~~v~~v~fs~dg~~l~~~~~~~~-~~~~v~~wd--------~~~~~~~l~gh~~~v~~v~f~p~~~~~  162 (611)
T 1nr0_A           92 THILKTTIPVFSGPVKDISWDSESKRIAAVGEGRE-RFGHVFLFD--------TGTSNGNLTGQARAMNSVDFKPSRPFR  162 (611)
T ss_dssp             TCCEEEEEECSSSCEEEEEECTTSCEEEEEECCSS-CSEEEEETT--------TCCBCBCCCCCSSCEEEEEECSSSSCE
T ss_pred             cceeeEeecccCCceEEEEECCCCCEEEEEECCCC-ceeEEEEee--------CCCCcceecCCCCCceEEEECCCCCeE
Confidence            3  23333 35678999999998776655432100 001111221        1122334678999999999999986 5


Q ss_pred             EEEeeCCCeEEEEECCCCceeeecccccCceeceEEEEECCCCCEEEEeeCCCcEEEEECCCCcEEEEEe--------cC
Q 021399          161 IISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYV--------TE  232 (313)
Q Consensus       161 i~t~~~d~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~--------~~  232 (313)
                      +++|+.|++|++||...+++...+   .+|...|.+++|+|+|++|++++.|++|++||+++++++..+.        +.
T Consensus       163 l~s~s~D~~v~lwd~~~~~~~~~l---~~H~~~V~~v~fspdg~~las~s~D~~i~lwd~~~g~~~~~~~~~~~~~~~h~  239 (611)
T 1nr0_A          163 IISGSDDNTVAIFEGPPFKFKSTF---GEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHS  239 (611)
T ss_dssp             EEEEETTSCEEEEETTTBEEEEEE---CCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSS
T ss_pred             EEEEeCCCeEEEEECCCCeEeeee---ccccCceEEEEECCCCCEEEEEECCCcEEEEECCCCcEeeeeccccccccccC
Confidence            999999999999999887766554   3799999999999999999999999999999999999988773        55


Q ss_pred             CceeEEEeccCCCEEEEcccccCceeEeeccCCCce-------------------------------eeeeeehhhhhhh
Q 021399          233 RPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKF-------------------------------EAKFFDKILQEEI  281 (313)
Q Consensus       233 ~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------------------~~~~~~~~~~~~~  281 (313)
                      ..+.+++|+|++..+++++.  +..+.+||.+.++.                               .+++|+...++..
T Consensus       240 ~~V~~v~~spdg~~l~s~s~--D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~  317 (611)
T 1nr0_A          240 GSVFGLTWSPDGTKIASASA--DKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPELGSID  317 (611)
T ss_dssp             SCEEEEEECTTSSEEEEEET--TSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETTTTEEE
T ss_pred             CCEEEEEECCCCCEEEEEeC--CCeEEEEeCCCCceeeeecCCCCccceeEEEEEcCCEEEEEeCCCcEEEEeCCCCCcc
Confidence            67999999999988776543  34577788665432                               2456776665566


Q ss_pred             ccccccccceeEEEECCCCCeeEEE
Q 021399          282 GGVKGHFGPINALAFNPDGKRYGFL  306 (313)
Q Consensus       282 ~~~~~h~~~V~~~~fspdgk~~~~~  306 (313)
                      ..+.+|..+|++++|+|||++++..
T Consensus       318 ~~~~gh~~~v~~l~~spdg~~l~s~  342 (611)
T 1nr0_A          318 QVRYGHNKAITALSSSADGKTLFSA  342 (611)
T ss_dssp             EEECCCSSCEEEEEECTTSSEEEEE
T ss_pred             eEEcCCCCCEEEEEEeCCCCEEEEE
Confidence            6778999999999999999988753

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=100.00  E-value=8.7e-38  Score=288.55  Aligned_cols=288  Identities=15%  Similarity=0.156  Sum_probs=218.4

Q ss_pred             cccccccceeEEEEccCCC-EEEEeeCCCCeEEEeCCCCcEEEEecCCCCceEEEEECCCCCeEEEeeCCCcEEEEECCC
Q 021399            5 LMKGHERPLTYLKYNKDGD-LLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVET   83 (313)
Q Consensus         5 ~l~~h~~~v~~~~fs~~g~-~l~s~s~d~~i~iw~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~v~vWd~~~   83 (313)
                      .+.+|.+.|.+++|+|+++ .|++|+.|++|++||..+++.+.++.+|.+.|.+++|+|++++|+||+.|++|++||+.+
T Consensus       142 ~l~gh~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~~~~~~l~~H~~~V~~v~fspdg~~las~s~D~~i~lwd~~~  221 (611)
T 1nr0_A          142 NLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVD  221 (611)
T ss_dssp             CCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTT
T ss_pred             eecCCCCCceEEEECCCCCeEEEEEeCCCeEEEEECCCCeEeeeeccccCceEEEEECCCCCEEEEEECCCcEEEEECCC
Confidence            5789999999999999997 699999999999999999999999999999999999999999999999999999999999


Q ss_pred             CeEEEEe--------cCCCCeeEEEeecCCeEE-EEECCCceeccccc---eeeeeeeC-------------C-------
Q 021399           84 GAQLFTF--------NFDSPARSVDFAVGDKLA-VITTDPFMELNSAI---HVKRIARD-------------P-------  131 (313)
Q Consensus        84 ~~~~~~~--------~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~---~~~~~~~~-------------~-------  131 (313)
                      ++.+..+        .+...+..+.|+|++..+ .++.+....++...   ....+...             .       
T Consensus       222 g~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s  301 (611)
T 1nr0_A          222 GTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSIS  301 (611)
T ss_dssp             CCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEE
T ss_pred             CcEeeeeccccccccccCCCEEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeecCCCCccceeEEEEEcCCEEEEEe
Confidence            8887766        355678899999876544 44445443332211   00000000             0       


Q ss_pred             --------CCCCCceEEEecCCCCceEEEEEccCCCEEEEeeCCCeEEEEECCCCceeeeccc-----------------
Q 021399          132 --------ADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDK-----------------  186 (313)
Q Consensus       132 --------~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~t~~~d~~i~lwd~~~~~~~~~~~~-----------------  186 (313)
                              ....+.....+.+|...|.+++|+|+++++++++.|+.|++||+.++.....+..                 
T Consensus       302 ~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg~~l~s~s~D~~v~~Wd~~~~~~~~~~~~~h~~~v~~~~~s~~~~l  381 (611)
T 1nr0_A          302 ANGFINFVNPELGSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDL  381 (611)
T ss_dssp             TTCCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTSCE
T ss_pred             CCCcEEEEeCCCCCcceEEcCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeeecccCCcceEEEEEECCCCcE
Confidence                    0011234456678999999999999999999999999999999987654322100                 


Q ss_pred             ---------------------------------------cc-----------------------CceeceEEEEECCCCC
Q 021399          187 ---------------------------------------ET-----------------------GHKKTITSLAKAADGS  204 (313)
Q Consensus       187 ---------------------------------------~~-----------------------~h~~~v~~~~~s~~~~  204 (313)
                                                             ..                       .|...+.+++|+|||+
T Consensus       382 ~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~va~spdg~  461 (611)
T 1nr0_A          382 FTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEVPISYNSSCVALSNDKQ  461 (611)
T ss_dssp             EEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTEEEEEECSSCEEEEEECTTSC
T ss_pred             EEEEcCCceEEeecCCccccccceeeeecCCCCcEEEEeCCCcEEEEEeCceEEEEeCCceeeeecCCCceEEEEeCCCC
Confidence                                                   00                       0223467899999999


Q ss_pred             EEEEeeCCCcEEEEECCCCcE--EEEEecCCceeEEEeccCCCEEEEcccccCceeEeeccCCCceeeeeeehhh-hhhh
Q 021399          205 HFLTGSLDKSAKLWDARTLEL--IKTYVTERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKIL-QEEI  281 (313)
Q Consensus       205 ~l~s~s~dg~i~iwd~~~~~~--~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~  281 (313)
                      +|++|+.|++|++||++++..  +....+...+.+++|+|++..+++++. |.             .+++|+..+ ++.+
T Consensus       462 ~lasgs~D~~v~lwd~~~~~~~~~~~~~h~~~v~~v~fspdg~~las~s~-d~-------------~v~~w~~~~~~~~~  527 (611)
T 1nr0_A          462 FVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAFLVATDQ-SR-------------KVIPYSVANNFELA  527 (611)
T ss_dssp             EEEEEETTSEEEEEEEETTEEEEEEEEECSSCEEEEEECTTSSEEEEEET-TS-------------CEEEEEGGGTTEES
T ss_pred             EEEEeCCCCeEEEEEccCCceeeeeccCCCCceEEEEECCCCCEEEEEcC-CC-------------CEEEEEcCCCCcee
Confidence            999999999999999987643  334446678999999999998776543 22             245666654 3333


Q ss_pred             cc--ccccccceeEEEECCCCCeeEEE
Q 021399          282 GG--VKGHFGPINALAFNPDGKRYGFL  306 (313)
Q Consensus       282 ~~--~~~h~~~V~~~~fspdgk~~~~~  306 (313)
                      ..  +.+|...|++++|||||++|+.-
T Consensus       528 ~~~~~~~H~~~V~~v~fspdg~~lasg  554 (611)
T 1nr0_A          528 HTNSWTFHTAKVACVSWSPDNVRLATG  554 (611)
T ss_dssp             CCCCCCCCSSCEEEEEECTTSSEEEEE
T ss_pred             eeeeeeecccceeEEEECCCCCEEEEE
Confidence            32  34599999999999999998763

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=100.00  E-value=9.1e-39  Score=274.75  Aligned_cols=228  Identities=18%  Similarity=0.227  Sum_probs=184.0

Q ss_pred             ccccceeEEEEccCCCEEEEeeCCCCeEEEeCCCCcEEE----EecCCCCceEEEEECCCCCeEEEeeCCCcEEEEECCC
Q 021399            8 GHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLG----TYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVET   83 (313)
Q Consensus         8 ~h~~~v~~~~fs~~g~~l~s~s~d~~i~iw~~~~~~~~~----~~~~H~~~V~~~~~~~~~~~l~s~s~D~~v~vWd~~~   83 (313)
                      .|...|.+++|+|++ .|++|+.||.|+|||+++++.+.    .+.+|.+.|++++|+|++++|+||+.|++|++||+++
T Consensus        80 ~~~~~v~~~~~s~d~-~l~~~s~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~~  158 (344)
T 4gqb_B           80 QTEAGVADLTWVGER-GILVASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQ  158 (344)
T ss_dssp             EESSCEEEEEEETTT-EEEEEETTSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTT
T ss_pred             ccCCCEEEEEEeCCC-eEEEEECCCEEEEEeccCCCceeEeeccccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCC
Confidence            456789999999985 78899999999999999887544    3458999999999999999999999999999999987


Q ss_pred             CeEEEEecCCCCeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEccCCC-EEE
Q 021399           84 GAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNR-TII  162 (313)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~i~  162 (313)
                      ++.+.                                                    .+.+|.+.|.++.|+|++. .++
T Consensus       159 ~~~~~----------------------------------------------------~~~~h~~~V~~~~~~~~~~~~l~  186 (344)
T 4gqb_B          159 QVVLS----------------------------------------------------SYRAHAAQVTCVAASPHKDSVFL  186 (344)
T ss_dssp             TEEEE----------------------------------------------------EECCCSSCEEEEEECSSCTTEEE
T ss_pred             CcEEE----------------------------------------------------EEcCcCCceEEEEecCCCCCcee
Confidence            75432                                                    3356788899999999874 689


Q ss_pred             EeeCCCeEEEEECCCCceeeecccccCceeceEEEEECCC-CCEEEEeeCCCcEEEEECCCCcEEEEEe-cCCceeEEEe
Q 021399          163 SAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAAD-GSHFLTGSLDKSAKLWDARTLELIKTYV-TERPVNAVTM  240 (313)
Q Consensus       163 t~~~d~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~-~~~l~s~s~dg~i~iwd~~~~~~~~~~~-~~~~~~~~~~  240 (313)
                      +++.|+.|++||+++++....+.. ..|...+.+++|+|+ +.+|++|+.||+|++||+++++++.++. +...+.+++|
T Consensus       187 s~s~D~~v~iwd~~~~~~~~~~~~-~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~~~~~~~~~h~~~v~~v~f  265 (344)
T 4gqb_B          187 SCSEDNRILLWDTRCPKPASQIGC-SAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKSTSCVLSSAVHSQCVTGLVF  265 (344)
T ss_dssp             EEETTSCEEEEETTSSSCEEECC-----CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC--CCEEEECCSSCEEEEEE
T ss_pred             eeccccccccccccccceeeeeec-ceeeccceeeeecCCCCcceEEeccCCcEEEEECCCCcEEEEEcCCCCCEEEEEE
Confidence            999999999999999887766532 346678999999985 5688999999999999999999988886 4668999999


Q ss_pred             ccCCCEEEEcccccCceeEeeccCCCceeeeeeehhhhhhhccccccccceeEEEECCCCCee
Q 021399          241 SPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKRY  303 (313)
Q Consensus       241 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~fspdgk~~  303 (313)
                      +|++..++++++.|. .            +++||..+++. ..+.+|.+.|++++|||+|+.+
T Consensus       266 sp~g~~~lasgs~D~-~------------i~vwd~~~~~~-~~~~~H~~~V~~v~~sp~~~~l  314 (344)
T 4gqb_B          266 SPHSVPFLASLSEDC-S------------LAVLDSSLSEL-FRSQAHRDFVRDATWSPLNHSL  314 (344)
T ss_dssp             CSSSSCCEEEEETTS-C------------EEEECTTCCEE-EEECCCSSCEEEEEECSSSTTE
T ss_pred             ccCCCeEEEEEeCCC-e------------EEEEECCCCcE-EEEcCCCCCEEEEEEeCCCCeE
Confidence            999876666665553 2            34555544433 3467899999999999999863

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=100.00  E-value=7.3e-38  Score=269.45  Aligned_cols=286  Identities=21%  Similarity=0.310  Sum_probs=210.8

Q ss_pred             ccccccc-ceeEEEEccCCCEEEEeeCCCCeEEEeCCCCcEE--E-EecCCCCceEEEEECCCCCeEEEeeCCCcEEEEE
Q 021399            5 LMKGHER-PLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERL--G-TYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWN   80 (313)
Q Consensus         5 ~l~~h~~-~v~~~~fs~~g~~l~s~s~d~~i~iw~~~~~~~~--~-~~~~H~~~V~~~~~~~~~~~l~s~s~D~~v~vWd   80 (313)
                      .|.+|.+ .|++++|+|+|++|++|+.|+.|+|||.+++...  . ...+|...|.+++|+|++++|++|+.|+++++||
T Consensus        10 ~~~~h~~~~v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~s~D~~v~iw~   89 (345)
T 3fm0_A           10 RVPAHPDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFDATTCIWK   89 (345)
T ss_dssp             EECCSTTSCEEEEEECTTSSCEEEEETTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred             eecCCCCCcEEEEEECCCCCEEEEEcCCCeEEEEEcCCCcceeeeeeccccCCcEEEEEECCCCCEEEEEECCCcEEEEE
Confidence            6789988 8999999999999999999999999999887643  2 2368999999999999999999999999999999


Q ss_pred             CCCCe--EEEEec-CCCCeeEEEeecCCeEEEE-ECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEcc
Q 021399           81 VETGA--QLFTFN-FDSPARSVDFAVGDKLAVI-TTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGP  156 (313)
Q Consensus        81 ~~~~~--~~~~~~-~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~  156 (313)
                      +.++.  .+..+. +..++.++.|+|++..++. +.+.      .+.+|++...   .....+..+.+|...|..+.|+|
T Consensus        90 ~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~s~D~------~v~iwd~~~~---~~~~~~~~~~~h~~~v~~~~~~p  160 (345)
T 3fm0_A           90 KNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDK------SVWVWEVDEE---DEYECVSVLNSHTQDVKHVVWHP  160 (345)
T ss_dssp             ECCC-EEEEEEECCCSSCEEEEEECTTSSEEEEEETTS------CEEEEEECTT---SCEEEEEEECCCCSCEEEEEECS
T ss_pred             ccCCCeEEEEEccCCCCCceEEEEeCCCCEEEEEECCC------eEEEEECCCC---CCeEEEEEecCcCCCeEEEEECC
Confidence            98764  333443 4568899999987665544 3333      3444444321   11234556788999999999999


Q ss_pred             CCCEEEEeeCCCeEEEEECCCCceeeecccccCceeceEEEEECCCCCEEEEeeCCCcEEEEECCCC-------------
Q 021399          157 LNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTL-------------  223 (313)
Q Consensus       157 ~~~~i~t~~~d~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~dg~i~iwd~~~~-------------  223 (313)
                      +++++++++.|+.|++||...+..... ....+|...|++++|+|+|++|++++.|++|++||....             
T Consensus       161 ~~~~l~s~s~d~~i~~w~~~~~~~~~~-~~~~~h~~~v~~l~~sp~g~~l~s~s~D~~v~iW~~~~~~~~~~~~~~~~~~  239 (345)
T 3fm0_A          161 SQELLASASYDDTVKLYREEEDDWVCC-ATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQGVACSGSDP  239 (345)
T ss_dssp             SSSCEEEEETTSCEEEEEEETTEEEEE-EEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEEECTTCTTCCCCC---C
T ss_pred             CCCEEEEEeCCCcEEEEEecCCCEEEE-EEecCCCCceEEEEECCCCCEEEEEeCCCeEEEeccccCCCCccceeeccCC
Confidence            999999999999999999877653221 122479999999999999999999999999999996321             


Q ss_pred             --cEEEEEe--cCCceeEEEeccCCCEEEEcccccCceeEeeccCCCceee-eeeehhhhhhhccccccccceeEEEECC
Q 021399          224 --ELIKTYV--TERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEA-KFFDKILQEEIGGVKGHFGPINALAFNP  298 (313)
Q Consensus       224 --~~~~~~~--~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~h~~~V~~~~fsp  298 (313)
                        +++.++.  +...+.+++|+|++..+++++++.  .+.+|+...+.... ..+    ........+|.+.|++++|+|
T Consensus       240 ~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~--~i~vw~~~~~~~~~~~~~----~~~~~~~~~h~~~V~~v~~~p  313 (345)
T 3fm0_A          240 SWKCICTLSGFHSRTIYDIAWCQLTGALATACGDD--AIRVFQEDPNSDPQQPTF----SLTAHLHQAHSQDVNCVAWNP  313 (345)
T ss_dssp             EEEEEEEECSSCSSCEEEEEECTTTCCEEEEETTS--CEEEEEECTTSCTTSCCE----EEEEEETTSSSSCEEEEEECS
T ss_pred             ccceeEEecCCCCCcEEEEEEecCCCEEEEEeCCC--eEEEEEeCCCCCcceeeE----EEEeeecccccCcEeEeEEeC
Confidence              2333332  456799999999999887765543  23333322111000 000    000122458999999999999


Q ss_pred             CCC-eeEEE
Q 021399          299 DGK-RYGFL  306 (313)
Q Consensus       299 dgk-~~~~~  306 (313)
                      ++. .||..
T Consensus       314 ~~~~~laS~  322 (345)
T 3fm0_A          314 KEPGLLASC  322 (345)
T ss_dssp             SSTTEEEEE
T ss_pred             CCceEEEEc
Confidence            985 66654

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=100.00  E-value=3.7e-37  Score=263.49  Aligned_cols=281  Identities=21%  Similarity=0.282  Sum_probs=212.8

Q ss_pred             cccccccceeEEEEccC-CCEEEEeeCCCCeEEEeCCCCc-----EEEEecCCCCceEEEEECCCCCeEEEeeCCCcEEE
Q 021399            5 LMKGHERPLTYLKYNKD-GDLLFSCAKDHTPTVWFADNGE-----RLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKL   78 (313)
Q Consensus         5 ~l~~h~~~v~~~~fs~~-g~~l~s~s~d~~i~iw~~~~~~-----~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~v~v   78 (313)
                      +|+||.+.|++|+|+|+ +++|+|||.|++|+|||+.+.+     ...++++|...|.+++|+|+++++++++.|+.|++
T Consensus        33 tL~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~dg~~l~s~~~d~~i~~  112 (340)
T 4aow_A           33 TLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWDGTLRL  112 (340)
T ss_dssp             EECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEE
T ss_pred             EECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECCCCCEEEEEcccccceE
Confidence            68999999999999998 6899999999999999987653     56788999999999999999999999999999999


Q ss_pred             EECCCCeEEEEecC-CCCeeEEEeecCCe-EEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEcc
Q 021399           79 WNVETGAQLFTFNF-DSPARSVDFAVGDK-LAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGP  156 (313)
Q Consensus        79 Wd~~~~~~~~~~~~-~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~  156 (313)
                      |+............ ........+.+... ++.+..+....      +++..     ..........+|...+..+.|++
T Consensus       113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~~~------~~d~~-----~~~~~~~~~~~~~~~v~~~~~~~  181 (340)
T 4aow_A          113 WDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIK------LWNTL-----GVCKYTVQDESHSEWVSCVRFSP  181 (340)
T ss_dssp             EETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEE------EECTT-----SCEEEEECSSSCSSCEEEEEECS
T ss_pred             EeecccceeeeecCCCCceeEEEEeecCccceeecCCCeEE------EEEeC-----CCceEEEEeccccCcccceEEcc
Confidence            99998876655543 34455555665444 44444433322      22111     11223344567888899999987


Q ss_pred             CC--CEEEEeeCCCeEEEEECCCCceeeecccccCceeceEEEEECCCCCEEEEeeCCCcEEEEECCCCcEEEEEecCCc
Q 021399          157 LN--RTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTERP  234 (313)
Q Consensus       157 ~~--~~i~t~~~d~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~  234 (313)
                      .+  ..+++++.|+.|++||+.+++.+..+.   +|...|++++|+|++++|++|+.|+.|++||+++.+++..+.....
T Consensus       182 ~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~---~h~~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~  258 (340)
T 4aow_A          182 NSSNPIIVSCGWDKLVKVWNLANCKLKTNHI---GHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGGDI  258 (340)
T ss_dssp             CSSSCEEEEEETTSCEEEEETTTTEEEEEEC---CCSSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEECSSC
T ss_pred             CCCCcEEEEEcCCCEEEEEECCCCceeeEec---CCCCcEEEEEECCCCCEEEEEeCCCeEEEEEeccCceeeeecCCce
Confidence            64  578899999999999999988776553   6889999999999999999999999999999999999999988889


Q ss_pred             eeEEEeccCCCEEEEcccccCceeEeeccCCCceeeeeeehhhhhhhccccccccceeEEEECCCCCeeEE
Q 021399          235 VNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKRYGF  305 (313)
Q Consensus       235 ~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~fspdgk~~~~  305 (313)
                      +.+++|+|.+..+ +++ . +..+.+||.+.+.....+   ..........+|...|++++|+|||+.++-
T Consensus       259 v~~~~~~~~~~~~-~~~-~-d~~i~iwd~~~~~~~~~~---~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s  323 (340)
T 4aow_A          259 INALCFSPNRYWL-CAA-T-GPSIKIWDLEGKIIVDEL---KQEVISTSSKAEPPQCTSLAWSADGQTLFA  323 (340)
T ss_dssp             EEEEEECSSSSEE-EEE-E-TTEEEEEETTTTEEEEEE---CCC-------CCCCCEEEEEECTTSSEEEE
T ss_pred             EEeeecCCCCcee-ecc-C-CCEEEEEECCCCeEEEec---cccceeeeccCCCCCEEEEEECCCCCEEEE
Confidence            9999999987543 332 2 345666776554432221   111122345689999999999999998764

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=100.00  E-value=8.9e-39  Score=276.42  Aligned_cols=275  Identities=16%  Similarity=0.198  Sum_probs=204.8

Q ss_pred             ccccccccceeEEEEccCCCEEEEeeC------CCCeEEEeCCCCcEE----EEecCCCCceEEEEECCCCCeEEEeeCC
Q 021399            4 ILMKGHERPLTYLKYNKDGDLLFSCAK------DHTPTVWFADNGERL----GTYRGHNGAVWCCDVSRDSMTLITGSAD   73 (313)
Q Consensus         4 ~~l~~h~~~v~~~~fs~~g~~l~s~s~------d~~i~iw~~~~~~~~----~~~~~H~~~V~~~~~~~~~~~l~s~s~D   73 (313)
                      ....+|++.|++++|||||++|++||.      |+.|++|+..++...    ....+|...|.+++|+|+++ +++++.|
T Consensus        36 ~~p~~H~~~V~~v~fSpDG~~las~s~d~~~~wd~~v~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~d~~-~l~~s~d  114 (357)
T 4g56_B           36 TAPACMEVQIGAVRYRRDGALLLAASSLSSRTWGGSIWVFKDPEGAPNESLCTAGVQTEAGVTDVAWVSEKG-ILVASDS  114 (357)
T ss_dssp             ----CCCSEEEEEEECSSSCEEEEEECSSSSSCCEEEEEESSCC---CGGGCSEEEECSSCEEEEEEETTTE-EEEEETT
T ss_pred             CCcccccCCEEEEEECCCCCEEEEEcCCCCccccCeEEEEECCCCCcceeEecccCCCCCCEEEEEEcCCCC-EEEEECC
Confidence            345689999999999999999999998      678999988776543    34467999999999999875 5678899


Q ss_pred             CcEEEEECCCCeEEEEe-----cCCCCeeEEEeecCCeEEEE-ECCCceeccccceeeeeeeCCCCCCCceEEEecCCCC
Q 021399           74 QTAKLWNVETGAQLFTF-----NFDSPARSVDFAVGDKLAVI-TTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQG  147 (313)
Q Consensus        74 ~~v~vWd~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  147 (313)
                      |+|++||+.+++.....     .+...+.++.|+|++..++. ..+..      +.+|++      ..+..+..+.+|.+
T Consensus       115 g~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~sgs~dg~------v~iwd~------~~~~~~~~~~~h~~  182 (357)
T 4g56_B          115 GAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGTQAVSGGKDFS------VKVWDL------SQKAVLKSYNAHSS  182 (357)
T ss_dssp             SCEEEC--------CCCCEEECCCSSCEEEEEECSSSSEEEEEETTSC------EEEEET------TTTEEEEEECCCSS
T ss_pred             CEEEEeeccccceeEEEeeccCCCCCCEEEEEECCCCCEEEEEeCCCe------EEEEEC------CCCcEEEEEcCCCC
Confidence            99999999887654322     34567889999987665544 33332      333332      23556778889999


Q ss_pred             ceEEEEEccCCC-EEEEeeCCCeEEEEECCCCceeeecccccCceeceEEEEECCC-CCEEEEeeCCCcEEEEECCCCcE
Q 021399          148 RINRAVWGPLNR-TIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAAD-GSHFLTGSLDKSAKLWDARTLEL  225 (313)
Q Consensus       148 ~i~~~~~~~~~~-~i~t~~~d~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~-~~~l~s~s~dg~i~iwd~~~~~~  225 (313)
                      .|.+++|+|+++ .+++++.|+.|++||++++++...... ..|...+.+++|+|+ +.+|++|+.|+.|++||++++++
T Consensus       183 ~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~~~-~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~~  261 (357)
T 4g56_B          183 EVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATRIDF-CASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPDS  261 (357)
T ss_dssp             CEEEEEECTTCSSCEEEEETTSCEEECCTTSSSCBCBCCC-TTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSCGGG
T ss_pred             CEEEEEEccCCCceeeeeccCCceEEEECCCCceeeeeee-ccccccccchhhhhcccceEEEeecccceeEEECCCCcE
Confidence            999999999875 789999999999999998876654432 346778999999997 56889999999999999999998


Q ss_pred             EEEEe-cCCceeEEEeccCCCEEEEcccccCceeEeeccCCCceeeeeeehhhhhhhccccccccceeEEEECC-CCCee
Q 021399          226 IKTYV-TERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNP-DGKRY  303 (313)
Q Consensus       226 ~~~~~-~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~fsp-dgk~~  303 (313)
                      +.++. +...+.+++|+|++..++++++.|+ .            +++||..+++.+.. .+|.++|++|+||| |+++|
T Consensus       262 ~~~~~~~~~~v~~l~~sp~~~~~lasgs~D~-~------------i~iwd~~~~~~~~~-~~H~~~V~~vafsP~d~~~l  327 (357)
T 4g56_B          262 AQTSAVHSQNITGLAYSYHSSPFLASISEDC-T------------VAVLDADFSEVFRD-LSHRDFVTGVAWSPLDHSKF  327 (357)
T ss_dssp             CEEECCCSSCEEEEEECSSSSCCEEEEETTS-C------------EEEECTTSCEEEEE-CCCSSCEEEEEECSSSTTEE
T ss_pred             eEEEeccceeEEEEEEcCCCCCEEEEEeCCC-E------------EEEEECCCCcEeEE-CCCCCCEEEEEEeCCCCCEE
Confidence            88875 4668999999999876666655543 2            45566555554443 47999999999999 89988


Q ss_pred             EEE
Q 021399          304 GFL  306 (313)
Q Consensus       304 ~~~  306 (313)
                      +-.
T Consensus       328 ~s~  330 (357)
T 4g56_B          328 TTV  330 (357)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            754

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=100.00  E-value=6.4e-38  Score=264.26  Aligned_cols=244  Identities=17%  Similarity=0.248  Sum_probs=187.1

Q ss_pred             ccccccccceeEEEEccCCCEEEEeeCCCCeEEEeCCCC--cEEEEecCCCCceEEEEECCC--CCeEEEeeCCCcEEEE
Q 021399            4 ILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNG--ERLGTYRGHNGAVWCCDVSRD--SMTLITGSADQTAKLW   79 (313)
Q Consensus         4 ~~l~~h~~~v~~~~fs~~g~~l~s~s~d~~i~iw~~~~~--~~~~~~~~H~~~V~~~~~~~~--~~~l~s~s~D~~v~vW   79 (313)
                      .++.+|.+.|.+++|+|+|++|++|+.|++|+|||+++.  +.+.++.+|.++|++++|+++  +++|+||+.|++|++|
T Consensus         3 ~~~~~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~iW   82 (297)
T 2pm7_B            3 VIANAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMIW   82 (297)
T ss_dssp             EECCSCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTTEEEEE
T ss_pred             eeccCCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCCcEEEEEEccccCCeEEEEecCCCcCCEEEEEcCCCEEEEE
Confidence            468899999999999999999999999999999998753  677899999999999999864  7899999999999999


Q ss_pred             ECCCCeEEEEecCCCCeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEccC--
Q 021399           80 NVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPL--  157 (313)
Q Consensus        80 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--  157 (313)
                      |+++++..                                                  .+..+.+|...|.++.|+|+  
T Consensus        83 d~~~~~~~--------------------------------------------------~~~~~~~h~~~v~~v~~~p~~~  112 (297)
T 2pm7_B           83 KEENGRWS--------------------------------------------------QIAVHAVHSASVNSVQWAPHEY  112 (297)
T ss_dssp             EBSSSCBC--------------------------------------------------CCEEECCCSSCEEEEEECCGGG
T ss_pred             EcCCCceE--------------------------------------------------EEEEeecCCCceeEEEeCcCCC
Confidence            98764210                                                  11223457788999999997  


Q ss_pred             CCEEEEeeCCCeEEEEECCCCceeeecccccCceeceEEEEECCC-------------CCEEEEeeCCCcEEEEECCCCc
Q 021399          158 NRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAAD-------------GSHFLTGSLDKSAKLWDARTLE  224 (313)
Q Consensus       158 ~~~i~t~~~d~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~-------------~~~l~s~s~dg~i~iwd~~~~~  224 (313)
                      +.++++++.|+.|++||++.+..... ....+|...|.+++|+|+             +.+|++|+.|++|++||+++++
T Consensus       113 g~~l~s~s~d~~v~~wd~~~~~~~~~-~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~  191 (297)
T 2pm7_B          113 GPMLLVASSDGKVSVVEFKENGTTSP-IIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDA  191 (297)
T ss_dssp             CSEEEEEETTSEEEEEEBCSSSCBCC-EEEECCSSCEEEEEECCCC------------CCEEEEEETTSCEEEEEEETTT
T ss_pred             CcEEEEEECCCcEEEEEecCCCceee-eeeecccCccceEeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCC
Confidence            78999999999999999976532211 112468899999999997             5699999999999999998765


Q ss_pred             ----EEEEEe-cCCceeEEEeccCC--CEEEEcccccCceeEeeccCCCceeeeeeehhhhhhhccccccccceeEEEEC
Q 021399          225 ----LIKTYV-TERPVNAVTMSPLL--DHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFN  297 (313)
Q Consensus       225 ----~~~~~~-~~~~~~~~~~~p~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~fs  297 (313)
                          +..++. +...+.+++|+|++  ...+++++.|. .+.+||.+......       ...+....+|...|++++|+
T Consensus       192 ~~~~~~~~l~~H~~~V~~v~~sp~~~~~~~las~s~D~-~v~iWd~~~~~~~~-------~~~~~~~~~~~~~v~~~~~s  263 (297)
T 2pm7_B          192 QTYVLESTLEGHSDWVRDVAWSPTVLLRSYMASVSQDR-TCIIWTQDNEQGPW-------KKTLLKEEKFPDVLWRASWS  263 (297)
T ss_dssp             TEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTS-CEEEEEESSTTSCC-------EEEESSSSCCSSCEEEEEEC
T ss_pred             ceEEEEEEecCCCCceEEEEECCCCCCceEEEEEECCC-cEEEEEeCCCCCcc-------ceeeeecccCCCcEEEEEEC
Confidence                445554 45679999999986  45555555543 34444432211000       00011124688999999999


Q ss_pred             CCCCeeEEE
Q 021399          298 PDGKRYGFL  306 (313)
Q Consensus       298 pdgk~~~~~  306 (313)
                      |||+.+|..
T Consensus       264 ~~g~~las~  272 (297)
T 2pm7_B          264 LSGNVLALS  272 (297)
T ss_dssp             SSSCCEEEE
T ss_pred             CCCCEEEEE
Confidence            999998764

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=100.00  E-value=7.3e-38  Score=277.70  Aligned_cols=287  Identities=14%  Similarity=0.174  Sum_probs=216.1

Q ss_pred             cccccccceeEEEEcc-CCCEEEEeeCCCCeEEEeCCCCcE--EEEecCCCCceEEEEECC-CCCeEEEeeCCCcEEEEE
Q 021399            5 LMKGHERPLTYLKYNK-DGDLLFSCAKDHTPTVWFADNGER--LGTYRGHNGAVWCCDVSR-DSMTLITGSADQTAKLWN   80 (313)
Q Consensus         5 ~l~~h~~~v~~~~fs~-~g~~l~s~s~d~~i~iw~~~~~~~--~~~~~~H~~~V~~~~~~~-~~~~l~s~s~D~~v~vWd   80 (313)
                      ...+|...|+||+|+| ++.+||+|+.||.|+|||+.+++.  ...+.+|.+.|++++|+| ++++|+|||.|++|++||
T Consensus       114 ~~~~~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~iwd  193 (435)
T 4e54_B          114 KAAPFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQD  193 (435)
T ss_dssp             EEEECSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTTEEEEECSSSCEEEEE
T ss_pred             cCCCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEee
Confidence            3457888999999999 467999999999999999987754  445678999999999998 678999999999999999


Q ss_pred             CCCCeEEEEecC---CCCeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEccC
Q 021399           81 VETGAQLFTFNF---DSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPL  157 (313)
Q Consensus        81 ~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~  157 (313)
                      ++++........   .....++.|.+++..++....     ++.+.++++.       +..+..+.+|...|.++.|+|.
T Consensus       194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~-----dg~i~~wd~~-------~~~~~~~~~h~~~v~~v~~~p~  261 (435)
T 4e54_B          194 FKGNILRVFASSDTINIWFCSLDVSASSRMVVTGDN-----VGNVILLNMD-------GKELWNLRMHKKKVTHVALNPC  261 (435)
T ss_dssp             TTSCEEEEEECCSSCSCCCCCEEEETTTTEEEEECS-----SSBEEEEESS-------SCBCCCSBCCSSCEEEEEECTT
T ss_pred             ccCCceeEEeccCCCCccEEEEEECCCCCEEEEEeC-----CCcEeeeccC-------cceeEEEecccceEEeeeecCC
Confidence            987655443332   234567888887766555432     2223344331       2234456789999999999998


Q ss_pred             CC-EEEEeeCCCeEEEEECCCCceeeecccccCceeceEEEEECCCCCEEEEeeCCCcEEEEECCCCcEEEEEecC----
Q 021399          158 NR-TIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTE----  232 (313)
Q Consensus       158 ~~-~i~t~~~d~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~----  232 (313)
                      ++ .+++|+.|+.|++||+++.+....+....+|...|++++|+|+|.+|++++.||+|++||++++.+...+...    
T Consensus       262 ~~~~~~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~  341 (435)
T 4e54_B          262 CDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSASQWDCPLGLIPHPHRH  341 (435)
T ss_dssp             CSSEEEEEETTSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSEEEEEESSSCEEEEESSSSSSEEEECCCCCCC
T ss_pred             CceEEEEecCcceeeEEecccccccceEEEeeeccccccceeECCCCCeeEEEcCCCEEEEEECCCCccceEEecccccc
Confidence            76 6789999999999999887655555445679999999999999999999999999999999998877665321    


Q ss_pred             ---CceeEEEeccCCCEEEEcccccCceeEeeccCCCceeeeeeehhhhhhhccc-cccccceeEE-EECCCCCeeEE
Q 021399          233 ---RPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGV-KGHFGPINAL-AFNPDGKRYGF  305 (313)
Q Consensus       233 ---~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~h~~~V~~~-~fspdgk~~~~  305 (313)
                         .....+.|+|.+..++++...+...+.......  ..+++||..+++.+..+ .+|...|.++ +|||||+.+|.
T Consensus       342 ~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~--~~i~iwd~~~g~~~~~l~~~~~~~v~s~~~fspdg~~las  417 (435)
T 4e54_B          342 FQHLTPIKAAWHPRYNLIVVGRYPDPNFKSCTPYEL--RTIDVFDGNSGKMMCQLYDPESSGISSLNEFNPMGDTLAS  417 (435)
T ss_dssp             CSSSCCCBCEECSSSSCEEEECCCCTTSCCSSTTCC--CCEEEECSSSCCEEEEECCSSCCCCCCEEEECTTSSCEEE
T ss_pred             cccceeEEEEEcCCCCEEEEEEcCCCCeEEEEecCC--CEEEEEECCCCcEEEEEeCCCCCcEEEEEEECCCCCEEEE
Confidence               123456788988888877655544332221111  13677887777766554 4788999887 79999998874

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=100.00  E-value=2.4e-36  Score=276.76  Aligned_cols=280  Identities=28%  Similarity=0.489  Sum_probs=213.9

Q ss_pred             cccccccceeEEEEccCCCEEEEeeCCCCeEEEeCCCCcEEEEecCCCCceEEEEECCCCCeEEEeeCCCcEEEEECCCC
Q 021399            5 LMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETG   84 (313)
Q Consensus         5 ~l~~h~~~v~~~~fs~~g~~l~s~s~d~~i~iw~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~v~vWd~~~~   84 (313)
                      .|+||++.|++++|||||++|++|+.|+.|+||| .+++++.++.+|.+.|++++|+|++++|+|++.|++|++||++ +
T Consensus        11 ~L~GH~~~V~~~a~spdg~~las~~~d~~v~iWd-~~~~~~~~l~gh~~~V~~l~fspdg~~las~~~d~~i~vWd~~-~   88 (577)
T 2ymu_A           11 RLEAHSSSVRGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRN-G   88 (577)
T ss_dssp             EECCCSSCEEEEEECTTSSCEEEEETTSEEEEEC-TTSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETT-S
T ss_pred             EECCCCCcEEEEEECCCCCEEEEEeCCCEEEEEE-CCCCEEEEEeCCCCCEEEEEECCCCCEEEEEeCCCEEEEEECC-C
Confidence            4899999999999999999999999999999999 4788999999999999999999999999999999999999975 4


Q ss_pred             eEEEEec-CCCCeeEEEeecCCeEEEEE-CCCceeccccc------------eeeeeeeCCC----------------CC
Q 021399           85 AQLFTFN-FDSPARSVDFAVGDKLAVIT-TDPFMELNSAI------------HVKRIARDPA----------------DQ  134 (313)
Q Consensus        85 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~------------~~~~~~~~~~----------------~~  134 (313)
                      +.+..+. +..++..+.|+|++..++.. .+.........            .+......+.                ..
T Consensus        89 ~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~  168 (577)
T 2ymu_A           89 QLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNR  168 (577)
T ss_dssp             CEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEECT
T ss_pred             CEEEEEECCCCCEEEEEECCCCCEEEEEcCCCceeecccccceeeeccCCCCceeeeeeecCCccceecccccceecccc
Confidence            5555554 56788899999876655443 33222111100            0000000000                01


Q ss_pred             CCceEEEecCCCCceEEEEEccCCCEEEEeeCCCeEEEEECCCCceeeecccccCceeceEEEEECCCCCEEEEeeCCCc
Q 021399          135 GGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKS  214 (313)
Q Consensus       135 ~~~~~~~~~~~~~~i~~~~~~~~~~~i~t~~~d~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~dg~  214 (313)
                      ..........+...+..+.++|+++++++++.|+.|++||.. ++.+..+   .+|...|.+++|+|++.+|++++.|+.
T Consensus       169 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~w~~~-~~~~~~~---~~~~~~v~~~~~s~dg~~l~~~~~d~~  244 (577)
T 2ymu_A          169 NGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRN-GQLLQTL---TGHSSSVRGVAFSPDGQTIASASDDKT  244 (577)
T ss_dssp             TSCEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECTT-SCEEEEE---ECCSSCEEEEEECTTSSCEEEEETTSC
T ss_pred             ceeeeeeccCCCcceeeeeecCCCCEEEEEcCCCEEEEEeCC-CcEEEEE---ecCCCCEEEEEECCCCCEEEEEeCCCE
Confidence            123344456677889999999999999999999999999964 4555544   368899999999999999999999999


Q ss_pred             EEEEECCCCcEEEEEe-cCCceeEEEeccCCCEEEEcccccCceeEeeccCCCceeeeeeehhhhhhhccccccccceeE
Q 021399          215 AKLWDARTLELIKTYV-TERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINA  293 (313)
Q Consensus       215 i~iwd~~~~~~~~~~~-~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~  293 (313)
                      |++||.. ++++..+. +...+.+++|+|++..+++++. + ..            +++|+. .++.+..+.+|...|++
T Consensus       245 i~~w~~~-~~~~~~~~~~~~~v~~v~~~~d~~~l~~~~~-d-~~------------i~~w~~-~~~~~~~~~~h~~~v~~  308 (577)
T 2ymu_A          245 VKLWNRN-GQLLQTLTGHSSSVNGVAFRPDGQTIASASD-D-KT------------VKLWNR-NGQLLQTLTGHSSSVWG  308 (577)
T ss_dssp             EEEECTT-SCEEEEECCCSSCEEEEEECTTSSEEEEEET-T-SC------------EEEEET-TSCEEEEECCCSSCEEE
T ss_pred             EEEEeCC-CCEEEEEecCCCCEEEEEEcCCCCEEEEEeC-C-CE------------EEEEeC-CCcEEEEEecCCCCeEE
Confidence            9999964 56666664 4668999999999988776543 2 22            345553 23344567789999999


Q ss_pred             EEECCCCCeeEEE
Q 021399          294 LAFNPDGKRYGFL  306 (313)
Q Consensus       294 ~~fspdgk~~~~~  306 (313)
                      ++|+||++.++..
T Consensus       309 ~~~~~~~~~l~t~  321 (577)
T 2ymu_A          309 VAFSPDGQTIASA  321 (577)
T ss_dssp             EEECTTSSEEEEE
T ss_pred             EEECCCCCEEEEE
Confidence            9999999998754

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=100.00  E-value=5.8e-38  Score=266.84  Aligned_cols=244  Identities=16%  Similarity=0.228  Sum_probs=181.5

Q ss_pred             ccccccccceeEEEEccCCCEEEEeeCCCCeEEEeCCCCc--EEEEecCCCCceEEEEECC--CCCeEEEeeCCCcEEEE
Q 021399            4 ILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGE--RLGTYRGHNGAVWCCDVSR--DSMTLITGSADQTAKLW   79 (313)
Q Consensus         4 ~~l~~h~~~v~~~~fs~~g~~l~s~s~d~~i~iw~~~~~~--~~~~~~~H~~~V~~~~~~~--~~~~l~s~s~D~~v~vW   79 (313)
                      .++.+|.+.|++++|+|+|++|++|+.|++|+|||+.+++  .+.++++|.+.|++++|++  ++++|+||+.|++|++|
T Consensus         7 ~~~~~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iW   86 (316)
T 3bg1_A            7 TVDTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIW   86 (316)
T ss_dssp             -------CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEEEEEEEEECCSSCEEEEEECCGGGSSCEEEEETTSCEEEE
T ss_pred             eecccccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEEEEE
Confidence            4678999999999999999999999999999999998875  4678999999999999986  48899999999999999


Q ss_pred             ECCCCeEEEEecCCCCeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEccC--
Q 021399           80 NVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPL--  157 (313)
Q Consensus        80 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--  157 (313)
                      |+++++.                                                  .....+.+|...|.+++|+|+  
T Consensus        87 d~~~~~~--------------------------------------------------~~~~~~~~h~~~V~~v~~~p~~~  116 (316)
T 3bg1_A           87 REENGTW--------------------------------------------------EKSHEHAGHDSSVNSVCWAPHDY  116 (316)
T ss_dssp             CCSSSCC--------------------------------------------------CEEEEECCCSSCCCEEEECCTTT
T ss_pred             ECCCCcc--------------------------------------------------eEEEEccCCCCceEEEEECCCCC
Confidence            9876421                                                  012234567888999999997  


Q ss_pred             CCEEEEeeCCCeEEEEECCCCceeeecccccCceeceEEEEECCC-----------------CCEEEEeeCCCcEEEEEC
Q 021399          158 NRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAAD-----------------GSHFLTGSLDKSAKLWDA  220 (313)
Q Consensus       158 ~~~i~t~~~d~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~-----------------~~~l~s~s~dg~i~iwd~  220 (313)
                      +.++++|+.|+.|++||+..+..........+|...+.+++|+|+                 +.+|++|+.|++|++||+
T Consensus       117 g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~  196 (316)
T 3bg1_A          117 GLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKE  196 (316)
T ss_dssp             CSCEEEECSSSCEEEEEECSSSCEEECCBTTSSSSCBCCCEECCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEE
T ss_pred             CcEEEEEcCCCCEEEEecCCCCCcceeeeeccccCCcceEEEccccCCccccccccccCccccceEEEecCCCeEEEEEe
Confidence            789999999999999999875432222233578889999999997                 468999999999999999


Q ss_pred             CCC---cEEEEEe-cCCceeEEEeccCC---CEEEEcccccCceeEeeccCCCceeeeeeehhhhhhhccccccccceeE
Q 021399          221 RTL---ELIKTYV-TERPVNAVTMSPLL---DHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINA  293 (313)
Q Consensus       221 ~~~---~~~~~~~-~~~~~~~~~~~p~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~  293 (313)
                      ++.   +++.++. +...+.+++|+|++   ...+++++.|+ .+.+|+.+.....        ......+.+|...|++
T Consensus       197 ~~~~~~~~~~~l~~h~~~V~~v~~sp~~~~~~~~las~s~D~-~v~iw~~~~~~~~--------~~~~~~~~~~~~~v~~  267 (316)
T 3bg1_A          197 EEDGQWKEEQKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDG-RVFIWTCDDASSN--------TWSPKLLHKFNDVVWH  267 (316)
T ss_dssp             CTTSCEEEEECCBCCSSCEEEEECCCCSSCSCCEEEEEETTC-EEEEEECSSTTCC--------CCBCCEEEECSSCEEE
T ss_pred             CCCCccceeeecccCCCceEEEEecCCCCCCCceEEEEcCCC-eEEEEEccCcccc--------chhhhhhhcCCCcEEE
Confidence            865   3555554 45679999999986   23445545443 3344443221000        0011234568999999


Q ss_pred             EEECCCCCeeEEE
Q 021399          294 LAFNPDGKRYGFL  306 (313)
Q Consensus       294 ~~fspdgk~~~~~  306 (313)
                      ++|+|||+++|..
T Consensus       268 v~~sp~g~~las~  280 (316)
T 3bg1_A          268 VSWSITANILAVS  280 (316)
T ss_dssp             EEECTTTCCEEEE
T ss_pred             EEEcCCCCEEEEE
Confidence            9999999998764

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.6e-36  Score=258.21  Aligned_cols=278  Identities=15%  Similarity=0.189  Sum_probs=200.0

Q ss_pred             ccccccccceeEEEEccCCCEEEEeeCCCCeEEEeCCCC--cEEEEe-cC-CCCceEEEEECCCCCeEEEeeCCCcEEEE
Q 021399            4 ILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNG--ERLGTY-RG-HNGAVWCCDVSRDSMTLITGSADQTAKLW   79 (313)
Q Consensus         4 ~~l~~h~~~v~~~~fs~~g~~l~s~s~d~~i~iw~~~~~--~~~~~~-~~-H~~~V~~~~~~~~~~~l~s~s~D~~v~vW   79 (313)
                      ..|.+|.++|++++|+|+  +|++|+.|+.|++||+.++  +.+..+ .+ |.+.|.+++|+|++++|++|+.|++|++|
T Consensus         8 ~~~~~h~~~v~~~~~s~~--~las~~~D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~v~iw   85 (330)
T 2hes_X            8 KSLKLYKEKIWSFDFSQG--ILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTSLLAAGSFDSTVSIW   85 (330)
T ss_dssp             EEEECCSSCEEEEEEETT--EEEEEESSSCEEEEECSSSCCEEEEEECTTCCCSCEEEEEECTTSSEEEEEETTSCEEEE
T ss_pred             eeeccCCCceeeeccCCC--EEEEEcCCCEEEEEEecCCCeEEEEEEecCCccCCEEEEEECCCCCEEEEEeCCCcEEEE
Confidence            368899999999999987  9999999999999999875  455666 45 99999999999999999999999999999


Q ss_pred             ECCCC-------eEEEEe-cCCCCeeEEEeecCCeEEEE-ECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceE
Q 021399           80 NVETG-------AQLFTF-NFDSPARSVDFAVGDKLAVI-TTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRIN  150 (313)
Q Consensus        80 d~~~~-------~~~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  150 (313)
                      |++..       +.+..+ .+...+.++.|+|++..++. +.+.      .+.+|++..  .....+.+..+.+|...|.
T Consensus        86 ~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~~las~s~D~------~v~iwd~~~--~~~~~~~~~~~~~h~~~v~  157 (330)
T 2hes_X           86 AKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDK------SVWIWETDE--SGEEYECISVLQEHSQDVK  157 (330)
T ss_dssp             EC-------CCCEEEEEEC----CEEEEEECTTSCEEEEEETTS------CEEEEECCT--TCCCCEEEEEECCCSSCEE
T ss_pred             EcccCcCccccceeEEEEcCCCCcEEEEEECCCCCEEEEEeCCC------EEEEEeccC--CCCCeEEEEEeccCCCceE
Confidence            98532       333333 34567889999987665544 3333      334444321  1112245667889999999


Q ss_pred             EEEEccCCCEEEEeeCCCeEEEEECCCC--ceeeecccccCceeceEEEEECCC--CCEEEEeeCCCcEEEEECCCC---
Q 021399          151 RAVWGPLNRTIISAGEDAIVRIWDTETG--KLLKESDKETGHKKTITSLAKAAD--GSHFLTGSLDKSAKLWDARTL---  223 (313)
Q Consensus       151 ~~~~~~~~~~i~t~~~d~~i~lwd~~~~--~~~~~~~~~~~h~~~v~~~~~s~~--~~~l~s~s~dg~i~iwd~~~~---  223 (313)
                      ++.|+|++++|++|+.|++|++||...+  +++..+   .+|...|.+++|+|+  +.+|++|+.|++|++||++++   
T Consensus       158 ~v~~~p~~~~l~s~s~D~~i~iW~~~~~~~~~~~~~---~~h~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~  234 (330)
T 2hes_X          158 HVIWHPSEALLASSSYDDTVRIWKDYDDDWECVAVL---NGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGDDED  234 (330)
T ss_dssp             EEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEE---CCCSSCEEEEEECCSSSSCEEEEEETTSCEEEEEEEEECTT
T ss_pred             EEEECCCCCEEEEEcCCCeEEEEECCCCCeeEEEEc---cCCCCcEEEEEecCCCCeeEEEEEeCCCeEEEEEecCCCcc
Confidence            9999999999999999999999998665  344433   479999999999998  778999999999999998764   


Q ss_pred             -----cEEEEEe--cCCceeEEEeccCCCEEEEcccccCceeEeeccCCCceeeeeeehhhhhhhcccccccc-ceeEEE
Q 021399          224 -----ELIKTYV--TERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFG-PINALA  295 (313)
Q Consensus       224 -----~~~~~~~--~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~-~V~~~~  295 (313)
                           .+...+.  +...+.+++|+|.+ . +++++.|+ .+.+|+...+..+.         ....+.+|.. .|++++
T Consensus       235 ~~~~~~~~~~~~~~h~~~v~~v~~s~~~-~-l~s~~~dg-~v~iw~~~~~~~~~---------~~~~~~~h~~~~v~~v~  302 (330)
T 2hes_X          235 DQQEWVCEAILPDVHKRQVYNVAWGFNG-L-IASVGADG-VLAVYEEVDGEWKV---------FAKRALCHGVYEINVVK  302 (330)
T ss_dssp             SCEEEEEEEECCSCCSSCEEEEEECTTS-C-EEEEETTS-CEEEEEEETTEEEE---------EEEESCTTTTSCEEEEE
T ss_pred             ccceeEEeeecccccccceEEEEEcCCC-E-EEEEeCCC-EEEEEEcCCCceEE---------EeccccccccceEEEEE
Confidence                 3444443  45679999999754 3 44444443 34444433222110         0112357887 999999


Q ss_pred             ECC--CCCeeEEE
Q 021399          296 FNP--DGKRYGFL  306 (313)
Q Consensus       296 fsp--dgk~~~~~  306 (313)
                      |+|  |++.++.-
T Consensus       303 ~~~~~~~~~las~  315 (330)
T 2hes_X          303 WLELNGKTILATG  315 (330)
T ss_dssp             EC-----CCEEEE
T ss_pred             EecCCCceEEEEe
Confidence            999  78887653

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=100.00  E-value=2.6e-36  Score=257.25  Aligned_cols=233  Identities=21%  Similarity=0.354  Sum_probs=201.9

Q ss_pred             cccccccceeEEEEccCCCEEEEeeCCCCeEEEeCCCCcEEEEecCCCCceEEEEECCCCCeEEEeeCCCcEEEEECCCC
Q 021399            5 LMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETG   84 (313)
Q Consensus         5 ~l~~h~~~v~~~~fs~~g~~l~s~s~d~~i~iw~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~v~vWd~~~~   84 (313)
                      .+.+|...|.+++|+++++++++++.|+.|++||+.+++.+..+..|...+.+++|+|++++|++++.|++|++||++++
T Consensus        75 ~l~gh~~~v~~~~~~~~~~~l~s~s~D~~i~lWd~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~g~~dg~v~i~~~~~~  154 (321)
T 3ow8_A           75 SLEGHQLGVVSVDISHTLPIAASSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESG  154 (321)
T ss_dssp             EECCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCCCCEEECTTSSEEEEECTTSEEEEEETTTC
T ss_pred             eeccCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCCEEEEEeCCCccEEEEEECCCCCEEEEEcCCCcEEEEEcCCC
Confidence            57899999999999999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             eEEEEecC-CCCeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEccCCCEEEE
Q 021399           85 AQLFTFNF-DSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIIS  163 (313)
Q Consensus        85 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~t  163 (313)
                      +....+.. ...+..+.|+|+++.++....     ++.+.++++      ..++.+..+.+|..+|.+++|+|++++|++
T Consensus       155 ~~~~~~~~~~~~v~~~~~spdg~~lasg~~-----dg~i~iwd~------~~~~~~~~~~~h~~~v~~l~~spd~~~l~s  223 (321)
T 3ow8_A          155 KKEYSLDTRGKFILSIAYSPDGKYLASGAI-----DGIINIFDI------ATGKLLHTLEGHAMPIRSLTFSPDSQLLVT  223 (321)
T ss_dssp             SEEEEEECSSSCEEEEEECTTSSEEEEEET-----TSCEEEEET------TTTEEEEEECCCSSCCCEEEECTTSCEEEE
T ss_pred             ceeEEecCCCceEEEEEECCCCCEEEEEcC-----CCeEEEEEC------CCCcEEEEEcccCCceeEEEEcCCCCEEEE
Confidence            87766643 456888999997766554332     223334433      234567778899999999999999999999


Q ss_pred             eeCCCeEEEEECCCCceeeecccccCceeceEEEEECCCCCEEEEeeCCCcEEEEECCCCcEEEEEe-cCCceeEEEecc
Q 021399          164 AGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYV-TERPVNAVTMSP  242 (313)
Q Consensus       164 ~~~d~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~-~~~~~~~~~~~p  242 (313)
                      |+.|+.|++||+++++....+   .+|...|.+++|+|++.+|++++.|++|++||+++++++.++. +...+.+++|+|
T Consensus       224 ~s~dg~i~iwd~~~~~~~~~~---~~h~~~v~~~~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~  300 (321)
T 3ow8_A          224 ASDDGYIKIYDVQHANLAGTL---SGHASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCVHTFFDHQDQVWGVKYNG  300 (321)
T ss_dssp             ECTTSCEEEEETTTCCEEEEE---CCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECT
T ss_pred             EcCCCeEEEEECCCcceeEEE---cCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCEEEEEEcCCCCcEEEEEECC
Confidence            999999999999988776655   3689999999999999999999999999999999999998885 456899999999


Q ss_pred             CCCEEEEcc
Q 021399          243 LLDHVVLGG  251 (313)
Q Consensus       243 ~~~~~~~~~  251 (313)
                      ++..+++++
T Consensus       301 ~g~~l~s~~  309 (321)
T 3ow8_A          301 NGSKIVSVG  309 (321)
T ss_dssp             TSSEEEEEE
T ss_pred             CCCEEEEEe
Confidence            998876654

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=100.00  E-value=9.9e-36  Score=272.65  Aligned_cols=266  Identities=27%  Similarity=0.500  Sum_probs=216.5

Q ss_pred             cccccccceeEEEEccCCCEEEEeeCCCCeEEEeCCCCcEEEEecCCCCceEEEEECCCCCeEEEeeCCCcEEEEECCCC
Q 021399            5 LMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETG   84 (313)
Q Consensus         5 ~l~~h~~~v~~~~fs~~g~~l~s~s~d~~i~iw~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~v~vWd~~~~   84 (313)
                      .+.+|...|.+++|+|++++|++++.|+.|++||.. +..+..+.+|...|.+++|+|+++.+++++.|+++++||... 
T Consensus       298 ~~~~h~~~v~~~~~~~~~~~l~t~~~d~~i~~w~~~-~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~~~~~~~-  375 (577)
T 2ymu_A          298 TLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRN-GQHLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNG-  375 (577)
T ss_dssp             EECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETT-SCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTC-
T ss_pred             EEecCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCC-CCeeEEEeCCCCCEEEEEECCCCCEEEEEeCCCEEEEEcCCC-
Confidence            578999999999999999999999999999999975 455678899999999999999999999999999999999654 


Q ss_pred             eEEEEe-cCCCCeeEEEeecCCeEEEE-ECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEccCCCEEE
Q 021399           85 AQLFTF-NFDSPARSVDFAVGDKLAVI-TTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTII  162 (313)
Q Consensus        85 ~~~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~  162 (313)
                      +.+..+ .+...+..+.|+++++.++. ..+...      .+++       ..++.+..+.+|...|..++|+|++++++
T Consensus       376 ~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~d~~v------~~~~-------~~~~~~~~~~~~~~~v~~~~~s~d~~~l~  442 (577)
T 2ymu_A          376 QLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTV------KLWN-------RNGQLLQTLTGHSSSVWGVAFSPDDQTIA  442 (577)
T ss_dssp             CEEEEEECCSSCEEEEEECTTSSCEEEEETTSEE------EEEC-------TTCCEEEEEECCSSCEEEEEECTTSSEEE
T ss_pred             CEEEEecCCCCCeEEEEECCCCCEEEEEeCCCEE------EEEe-------CCCCEEEEecCCCCCeEEEEECCCCCEEE
Confidence            444444 35677889999987665544 333322      2222       12456677889999999999999999999


Q ss_pred             EeeCCCeEEEEECCCCceeeecccccCceeceEEEEECCCCCEEEEeeCCCcEEEEECCCCcEEEEEe-cCCceeEEEec
Q 021399          163 SAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYV-TERPVNAVTMS  241 (313)
Q Consensus       163 t~~~d~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~-~~~~~~~~~~~  241 (313)
                      +++.|+.|++||.. ++.+..+   .+|...|++++|+|++++|++++.|++|++||. +++++..+. +...+.+++|+
T Consensus       443 ~~~~d~~v~~w~~~-~~~~~~~---~~~~~~v~~~~~spd~~~las~~~d~~i~iw~~-~~~~~~~~~~h~~~v~~l~~s  517 (577)
T 2ymu_A          443 SASDDKTVKLWNRN-GQLLQTL---TGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFS  517 (577)
T ss_dssp             EEETTSEEEEEETT-SCEEEEE---ECCSSCEEEEEECTTSCEEEEEETTSEEEEEET-TSCEEEEEECCSSCEEEEEEC
T ss_pred             EEcCCCEEEEEECC-CCEEEEE---cCCCCCEEEEEEcCCCCEEEEEeCCCEEEEEcC-CCCEEEEEeCCCCCEEEEEEc
Confidence            99999999999975 4555444   368899999999999999999999999999995 677877776 46689999999


Q ss_pred             cCCCEEEEcccccCceeEeeccCCCceeeeeeehhhhhhhccccccccceeEEEECCCCCeeEE
Q 021399          242 PLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKRYGF  305 (313)
Q Consensus       242 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~fspdgk~~~~  305 (313)
                      |++..+++++ .| .            .+++||. +++.+..+.+|.++|++++|+|||++++-
T Consensus       518 ~dg~~l~s~~-~d-g------------~v~lwd~-~~~~~~~~~~h~~~v~~~~fs~dg~~l~s  566 (577)
T 2ymu_A          518 PDGQTIASAS-DD-K------------TVKLWNR-NGQLLQTLTGHSSSVWGVAFSPDGQTIAS  566 (577)
T ss_dssp             TTSSCEEEEE-TT-S------------EEEEECT-TSCEEEEEECCSSCEEEEEECTTSSCEEE
T ss_pred             CCCCEEEEEE-Cc-C------------EEEEEeC-CCCEEEEEcCCCCCEEEEEEcCCCCEEEE
Confidence            9999877654 33 2            2456663 45566778899999999999999998764

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=100.00  E-value=4.1e-36  Score=264.45  Aligned_cols=233  Identities=25%  Similarity=0.397  Sum_probs=200.1

Q ss_pred             ccccccccceeEEEEccCCCEEEEeeCCCCeEEEeCCCCcEEEEecCCCCceEEEEECCCCCeEEEeeCCCcEEEEECCC
Q 021399            4 ILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVET   83 (313)
Q Consensus         4 ~~l~~h~~~v~~~~fs~~g~~l~s~s~d~~i~iw~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~v~vWd~~~   83 (313)
                      .++.+|.+.|.+++|+|+|++|++|+.|++|++||+.+++.+.++.+|...|.+++|+|+++.++||+.|++|++||+.+
T Consensus       144 ~~l~~h~~~V~~v~~~~~~~~l~sgs~D~~i~iwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~  223 (410)
T 1vyh_C          144 RTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQT  223 (410)
T ss_dssp             EEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEETTSSCEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTT
T ss_pred             EEEeccCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCC
Confidence            47889999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CeEEEEec-CCCCeeEEEeecCCeEEEEE-CCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEccC----
Q 021399           84 GAQLFTFN-FDSPARSVDFAVGDKLAVIT-TDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPL----  157 (313)
Q Consensus        84 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~----  157 (313)
                      +.++..+. +...+..+.+.+++..++.. .+.      .+.+|++.      .......+.+|...|.++.|+|+    
T Consensus       224 ~~~~~~~~~h~~~v~~~~~~~~g~~l~s~s~D~------~v~vwd~~------~~~~~~~~~~h~~~v~~~~~~~~~~~~  291 (410)
T 1vyh_C          224 GYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQ------TVRVWVVA------TKECKAELREHRHVVECISWAPESSYS  291 (410)
T ss_dssp             CCEEEEEECCSSCEEEEEECTTSSEEEEEETTS------CEEEEETT------TCCEEEEECCCSSCEEEEEECCSCGGG
T ss_pred             CcEEEEEeCCCccEEEEEECCCCCEEEEEcCCC------eEEEEECC------CCceeeEecCCCceEEEEEEcCccccc
Confidence            98877665 45567888888876655443 333      33344331      23456677889999999999986    


Q ss_pred             ----------------CCEEEEeeCCCeEEEEECCCCceeeecccccCceeceEEEEECCCCCEEEEeeCCCcEEEEECC
Q 021399          158 ----------------NRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDAR  221 (313)
Q Consensus       158 ----------------~~~i~t~~~d~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~dg~i~iwd~~  221 (313)
                                      +.++++|+.|+.|++||+.++.++..+.   +|...|++++|+|++.+|++|+.|++|++||++
T Consensus       292 ~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~~~~~~~~---~h~~~v~~v~~~~~g~~l~s~s~D~~i~vwd~~  368 (410)
T 1vyh_C          292 SISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLV---GHDNWVRGVLFHSGGKFILSCADDKTLRVWDYK  368 (410)
T ss_dssp             GGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEEEEEE---CCSSCEEEEEECSSSSCEEEEETTTEEEEECCT
T ss_pred             chhhhccccccccCCCCCEEEEEeCCCeEEEEECCCCceEEEEE---CCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECC
Confidence                            6689999999999999999988776653   688999999999999999999999999999999


Q ss_pred             CCcEEEEEe-cCCceeEEEeccCCCEEEEcc
Q 021399          222 TLELIKTYV-TERPVNAVTMSPLLDHVVLGG  251 (313)
Q Consensus       222 ~~~~~~~~~-~~~~~~~~~~~p~~~~~~~~~  251 (313)
                      +++++.++. +...+.+++|+|++..+++++
T Consensus       369 ~~~~~~~~~~h~~~v~~l~~~~~~~~l~sgs  399 (410)
T 1vyh_C          369 NKRCMKTLNAHEHFVTSLDFHKTAPYVVTGS  399 (410)
T ss_dssp             TSCCCEEEECCSSCEEEEEECSSSSCEEEEE
T ss_pred             CCceEEEEcCCCCcEEEEEEcCCCCEEEEEe
Confidence            999888886 466899999999998876654

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=100.00  E-value=1.1e-35  Score=260.42  Aligned_cols=271  Identities=23%  Similarity=0.391  Sum_probs=208.4

Q ss_pred             ccccceeEEEEccCCCEEEEeeCCCCeEEEeCCCCcEEEEecCCCC------------------ceEEEEECCCCCeEEE
Q 021399            8 GHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNG------------------AVWCCDVSRDSMTLIT   69 (313)
Q Consensus         8 ~h~~~v~~~~fs~~g~~l~s~s~d~~i~iw~~~~~~~~~~~~~H~~------------------~V~~~~~~~~~~~l~s   69 (313)
                      +|...|.+++|+|||++|++|+ |+.++||+..+++.+..+..|..                  .|.+++|+|++++|++
T Consensus        62 ~h~~~V~~v~fspdg~~la~g~-~~~v~i~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~s  140 (393)
T 1erj_A           62 DHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLAT  140 (393)
T ss_dssp             ECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSSEEEE
T ss_pred             CCCCEEEEEEECCCCCEEEEEc-CCcEEEEEecCCCEEEEecCccccccccccccccccCCCceeEEEEEECCCCCEEEE
Confidence            6999999999999999999976 78999999999999888876642                  4999999999999999


Q ss_pred             eeCCCcEEEEECCCCeEEEEec-CCCCeeEEEeecCCeEEEE-ECCCceeccccceeeeeeeCCCCCCCceEEEecCCCC
Q 021399           70 GSADQTAKLWNVETGAQLFTFN-FDSPARSVDFAVGDKLAVI-TTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQG  147 (313)
Q Consensus        70 ~s~D~~v~vWd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  147 (313)
                      |+.|++|++||+.+++.+..+. +...+.++.|.+++..++. +.+.      .+.+|++.      .+.....+. +..
T Consensus       141 ~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~------~v~iwd~~------~~~~~~~~~-~~~  207 (393)
T 1erj_A          141 GAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDR------TVRIWDLR------TGQCSLTLS-IED  207 (393)
T ss_dssp             EETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTS------EEEEEETT------TTEEEEEEE-CSS
T ss_pred             EcCCCeEEEEECCCCcEEEEEccCCCCEEEEEEcCCCCEEEEecCCC------cEEEEECC------CCeeEEEEE-cCC
Confidence            9999999999999998877665 5667889999986654443 3333      23334332      122333333 456


Q ss_pred             ceEEEEEcc-CCCEEEEeeCCCeEEEEECCCCceeeeccc----ccCceeceEEEEECCCCCEEEEeeCCCcEEEEECCC
Q 021399          148 RINRAVWGP-LNRTIISAGEDAIVRIWDTETGKLLKESDK----ETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDART  222 (313)
Q Consensus       148 ~i~~~~~~~-~~~~i~t~~~d~~i~lwd~~~~~~~~~~~~----~~~h~~~v~~~~~s~~~~~l~s~s~dg~i~iwd~~~  222 (313)
                      .+..+.|+| +++++++|+.|+.|++||+.++..+..+..    ..+|...|.+++|+|++.+|++|+.|++|++||+++
T Consensus       208 ~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d~~v~~wd~~~  287 (393)
T 1erj_A          208 GVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQN  287 (393)
T ss_dssp             CEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC--
T ss_pred             CcEEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeCCCEEEEEECCC
Confidence            789999999 889999999999999999998877655421    246889999999999999999999999999999976


Q ss_pred             Cc------------EEEEEe-cCCceeEEEeccCCCEEEEcccccCceeEeeccCCCceeeeeeehhhhhhhcccccccc
Q 021399          223 LE------------LIKTYV-TERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFG  289 (313)
Q Consensus       223 ~~------------~~~~~~-~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~  289 (313)
                      ..            +...+. +...+.+++|+|++..+++++ .|+             .+++||..+++.+..+.+|.+
T Consensus       288 ~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs-~D~-------------~v~iwd~~~~~~~~~l~~h~~  353 (393)
T 1erj_A          288 ANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGS-KDR-------------GVLFWDKKSGNPLLMLQGHRN  353 (393)
T ss_dssp             -------------CEEEEEECCSSCEEEEEECGGGCEEEEEE-TTS-------------EEEEEETTTCCEEEEEECCSS
T ss_pred             CCCcccccCCCCCcceEEEecccCcEEEEEECCCCCEEEEEe-CCC-------------eEEEEECCCCeEEEEECCCCC
Confidence            42            333443 455689999999988776543 332             245677777777777889999


Q ss_pred             ceeEEEECC------CCCeeEEE
Q 021399          290 PINALAFNP------DGKRYGFL  306 (313)
Q Consensus       290 ~V~~~~fsp------dgk~~~~~  306 (313)
                      .|++++|+|      +++.|+..
T Consensus       354 ~v~~v~~~~~~~~~p~~~~l~sg  376 (393)
T 1erj_A          354 SVISVAVANGSSLGPEYNVFATG  376 (393)
T ss_dssp             CEEEEEECSSCTTCTTCEEEEEE
T ss_pred             CEEEEEecCCcCcCCCCCEEEEE
Confidence            999999987      56766543

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=100.00  E-value=7.9e-36  Score=279.43  Aligned_cols=284  Identities=20%  Similarity=0.273  Sum_probs=214.4

Q ss_pred             cccccccceeEEEEccCC-CEEEEeeCCCCeEEEeCCCC-----cEEEEecCCCCceEEEEECCCCCeEEEeeCCCcEEE
Q 021399            5 LMKGHERPLTYLKYNKDG-DLLFSCAKDHTPTVWFADNG-----ERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKL   78 (313)
Q Consensus         5 ~l~~h~~~v~~~~fs~~g-~~l~s~s~d~~i~iw~~~~~-----~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~v~v   78 (313)
                      .|++|.+.|++++|+|++ ++|+|||.|++|++|++.+.     .....+.+|.+.|.+++|+|++++|+||+.|++|++
T Consensus       377 ~l~~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~sgs~Dg~v~v  456 (694)
T 3dm0_A          377 TMRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQFALSGSWDGELRL  456 (694)
T ss_dssp             EEECCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEE
T ss_pred             hcccCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcccccccceecCCCCcEEEEEECCCCCEEEEEeCCCcEEE
Confidence            578999999999999875 79999999999999998753     356788999999999999999999999999999999


Q ss_pred             EECCCCeEEEEec-CCCCeeEEEeecCCe-EEEEECCCceeccccceeeeeeeCCCCCCCceEEE---ecCCCCceEEEE
Q 021399           79 WNVETGAQLFTFN-FDSPARSVDFAVGDK-LAVITTDPFMELNSAIHVKRIARDPADQGGESVLI---LKGPQGRINRAV  153 (313)
Q Consensus        79 Wd~~~~~~~~~~~-~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~i~~~~  153 (313)
                      ||+.+++.+..+. +...+.++.|++++. ++.++.+....      +|+..      .......   ..+|...|.++.
T Consensus       457 wd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~------iwd~~------~~~~~~~~~~~~~h~~~v~~~~  524 (694)
T 3dm0_A          457 WDLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIK------LWNTL------GECKYTISEGGEGHRDWVSCVR  524 (694)
T ss_dssp             EETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEE------EECTT------SCEEEEECSSTTSCSSCEEEEE
T ss_pred             EECCCCcceeEEeCCCCCEEEEEEeCCCCEEEEEeCCCEEE------EEECC------CCcceeeccCCCCCCCcEEEEE
Confidence            9999998776654 567889999998665 44444444333      33211      0111111   146788899999


Q ss_pred             EccCC--CEEEEeeCCCeEEEEECCCCceeeecccccCceeceEEEEECCCCCEEEEeeCCCcEEEEECCCCcEEEEEec
Q 021399          154 WGPLN--RTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVT  231 (313)
Q Consensus       154 ~~~~~--~~i~t~~~d~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~  231 (313)
                      |+|++  ..+++++.|+.|++||+.++++...+   .+|...|++++|+|++++|++|+.||+|++||+++++++..+..
T Consensus       525 ~~~~~~~~~l~s~s~d~~v~vwd~~~~~~~~~~---~~h~~~v~~v~~spdg~~l~sg~~Dg~i~iwd~~~~~~~~~~~~  601 (694)
T 3dm0_A          525 FSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTL---AGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYSLEA  601 (694)
T ss_dssp             ECSCSSSCEEEEEETTSCEEEEETTTCCEEEEE---CCCSSCEEEEEECTTSSEEEEEETTSBCEEEETTTTEEEECCBC
T ss_pred             EeCCCCcceEEEEeCCCeEEEEECCCCcEEEEE---cCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEecC
Confidence            99986  57999999999999999988776654   36899999999999999999999999999999999999988877


Q ss_pred             CCceeEEEeccCCCEEEEcccccCceeEeeccCCCceeeeeee-hhhh------hhhccccccccceeEEEECCCCCeeE
Q 021399          232 ERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFD-KILQ------EEIGGVKGHFGPINALAFNPDGKRYG  304 (313)
Q Consensus       232 ~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~------~~~~~~~~h~~~V~~~~fspdgk~~~  304 (313)
                      ...+.+++|+|++..++++.  + ..+.+||.+.+.....+-. ....      ........+...+++++|||||+.++
T Consensus       602 ~~~v~~~~~sp~~~~l~~~~--~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~spdg~~l~  678 (694)
T 3dm0_A          602 NSVIHALCFSPNRYWLCAAT--E-HGIKIWDLESKSIVEDLKVDLKAEAEKADNSGPAATKRKVIYCTSLNWSADGSTLF  678 (694)
T ss_dssp             SSCEEEEEECSSSSEEEEEE--T-TEEEEEETTTTEEEEEECCCCC----------------CCCCEEEEEECTTSSEEE
T ss_pred             CCcEEEEEEcCCCcEEEEEc--C-CCEEEEECCCCCChhhhccccccccccccccccccCCceeEEeeeEEEcCCCCEEE
Confidence            78899999999987655432  2 2266666655443221110 0000      00000112233578999999999987


Q ss_pred             EE
Q 021399          305 FL  306 (313)
Q Consensus       305 ~~  306 (313)
                      ..
T Consensus       679 sg  680 (694)
T 3dm0_A          679 SG  680 (694)
T ss_dssp             EE
T ss_pred             EE
Confidence            54

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.2e-35  Score=259.54  Aligned_cols=269  Identities=20%  Similarity=0.324  Sum_probs=219.9

Q ss_pred             ccccceeEEEEccCCCEEEEeeCCCCeEEEeCCCCcEEEEecCCCCceEEEEECCCCCeEEEeeCCCcEEEEECCCCeEE
Q 021399            8 GHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQL   87 (313)
Q Consensus         8 ~h~~~v~~~~fs~~g~~l~s~s~d~~i~iw~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~v~vWd~~~~~~~   87 (313)
                      +|.+.|.+++|+|++++|++++.|+.|++|| .+++.+..+.+|...|.+++|+|+++.|++++.|+.|++||+.+++.+
T Consensus       106 ~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~  184 (425)
T 1r5m_A          106 KTTNQVTCLAWSHDGNSIVTGVENGELRLWN-KTGALLNVLNFHRAPIVSVKWNKDGTHIISMDVENVTILWNVISGTVM  184 (425)
T ss_dssp             --CBCEEEEEECTTSSEEEEEETTSCEEEEE-TTSCEEEEECCCCSCEEEEEECTTSSEEEEEETTCCEEEEETTTTEEE
T ss_pred             CCCCceEEEEEcCCCCEEEEEeCCCeEEEEe-CCCCeeeeccCCCccEEEEEECCCCCEEEEEecCCeEEEEECCCCcEE
Confidence            3788999999999999999999999999999 778889999999999999999999999999999999999999999887


Q ss_pred             EEecCCC-C---------------eeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEE
Q 021399           88 FTFNFDS-P---------------ARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINR  151 (313)
Q Consensus        88 ~~~~~~~-~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~  151 (313)
                      ..+.... .               +..+.|.++..+++...+.      .+.++++.      ....+..+..|...+..
T Consensus       185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g------~i~~~d~~------~~~~~~~~~~~~~~i~~  252 (425)
T 1r5m_A          185 QHFELKETGGSSINAENHSGDGSLGVDVEWVDDDKFVIPGPKG------AIFVYQIT------EKTPTGKLIGHHGPISV  252 (425)
T ss_dssp             EEECCC---------------CCCBSCCEEEETTEEEEECGGG------CEEEEETT------CSSCSEEECCCSSCEEE
T ss_pred             EEeeccccCccceeeccccCCcceeeEEEEcCCCEEEEEcCCC------eEEEEEcC------CCceeeeeccCCCceEE
Confidence            7665432 2               6667777777766654432      23333322      12344566788999999


Q ss_pred             EEEccCCCEEEEeeCCCeEEEEECCCCceeeecccccCceeceEEEEECCCCCEEEEeeCCCcEEEEECCCCcEEEEEec
Q 021399          152 AVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVT  231 (313)
Q Consensus       152 ~~~~~~~~~i~t~~~d~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~  231 (313)
                      +.|+|+++++++++.|+.|++||+.+++.+..+.   +|...+.+++|+|++ .+++++.|+.|++||+++++++..+..
T Consensus       253 ~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~---~~~~~i~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~  328 (425)
T 1r5m_A          253 LEFNDTNKLLLSASDDGTLRIWHGGNGNSQNCFY---GHSQSIVSASWVGDD-KVISCSMDGSVRLWSLKQNTLLALSIV  328 (425)
T ss_dssp             EEEETTTTEEEEEETTSCEEEECSSSBSCSEEEC---CCSSCEEEEEEETTT-EEEEEETTSEEEEEETTTTEEEEEEEC
T ss_pred             EEECCCCCEEEEEcCCCEEEEEECCCCccceEec---CCCccEEEEEECCCC-EEEEEeCCCcEEEEECCCCcEeEeccc
Confidence            9999999999999999999999999887665553   588899999999999 999999999999999999998888764


Q ss_pred             -CCceeEEEeccCCCEEEEcccccCceeEeeccCCCceeeeeeehhhhh--------------------hhcccccccc-
Q 021399          232 -ERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQE--------------------EIGGVKGHFG-  289 (313)
Q Consensus       232 -~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------~~~~~~~h~~-  289 (313)
                       ...+.+++|+|++..+++++. + +            .+++||..+.+                    .+..+.+|.. 
T Consensus       329 ~~~~i~~~~~s~~~~~l~~~~~-d-g------------~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  394 (425)
T 1r5m_A          329 DGVPIFAGRISQDGQKYAVAFM-D-G------------QVNVYDLKKLNSKSRSLYGNRDGILNPLPIPLYASYQSSQDN  394 (425)
T ss_dssp             TTCCEEEEEECTTSSEEEEEET-T-S------------CEEEEECHHHHC--------------CEECCEEEEECCTTCC
T ss_pred             CCccEEEEEEcCCCCEEEEEEC-C-C------------eEEEEECCCCccceeeeecccccccCcccchhhhhhcCcccC
Confidence             668999999999988776543 2 2            24556665555                    6777888976 


Q ss_pred             -ceeEEEECCCCCeeEEEE
Q 021399          290 -PINALAFNPDGKRYGFLL  307 (313)
Q Consensus       290 -~V~~~~fspdgk~~~~~~  307 (313)
                       .|++++|+|||+.++...
T Consensus       395 ~~v~~~~~s~~~~~l~~~~  413 (425)
T 1r5m_A          395 DYIFDLSWNCAGNKISVAY  413 (425)
T ss_dssp             CCEEEEEECTTSSEEEEEE
T ss_pred             CceEEEEccCCCceEEEEe
Confidence             999999999999887653

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=100.00  E-value=2.2e-36  Score=259.86  Aligned_cols=198  Identities=21%  Similarity=0.265  Sum_probs=167.7

Q ss_pred             cccccccceeEEEEccCCCEEEEeeCCCCeEEEeCCCCcEEEEecCCCCceEEEEECCCCC-eEEEeeCCCcEEEEECCC
Q 021399            5 LMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSM-TLITGSADQTAKLWNVET   83 (313)
Q Consensus         5 ~l~~h~~~v~~~~fs~~g~~l~s~s~d~~i~iw~~~~~~~~~~~~~H~~~V~~~~~~~~~~-~l~s~s~D~~v~vWd~~~   83 (313)
                      .+.+|.+.|++++|+|+|++|++|+.|++|++||+.+++.+.++.+|.+.|.+++|++++. +|+||+.|++|++||+++
T Consensus       122 ~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~~~~~~~~~~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~  201 (344)
T 4gqb_B          122 CKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQQVVLSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRC  201 (344)
T ss_dssp             EEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTS
T ss_pred             cccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCcCCceEEEEecCCCCCceeeeccccccccccccc
Confidence            3568999999999999999999999999999999999999999999999999999999875 789999999999999988


Q ss_pred             CeEEEEecCCCCeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEccC-CCEEE
Q 021399           84 GAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPL-NRTII  162 (313)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~i~  162 (313)
                      ++....+..                                                  ..+...+.++.|+|. +++++
T Consensus       202 ~~~~~~~~~--------------------------------------------------~~~~~~~~~~~~~p~~~~~l~  231 (344)
T 4gqb_B          202 PKPASQIGC--------------------------------------------------SAPGYLPTSLAWHPQQSEVFV  231 (344)
T ss_dssp             SSCEEECC------------------------------------------------------CCCEEEEEECSSCTTEEE
T ss_pred             cceeeeeec--------------------------------------------------ceeeccceeeeecCCCCcceE
Confidence            765432210                                                  112345677888885 56788


Q ss_pred             EeeCCCeEEEEECCCCceeeecccccCceeceEEEEECCCC-CEEEEeeCCCcEEEEECCCCcEEEEEecCCceeEEEec
Q 021399          163 SAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADG-SHFLTGSLDKSAKLWDARTLELIKTYVTERPVNAVTMS  241 (313)
Q Consensus       163 t~~~d~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~-~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~  241 (313)
                      +|+.|+.|++||+++++++..+.   +|...|++++|+|++ .+|++|+.|++|++||+++++++....+...|.+++|+
T Consensus       232 sg~~dg~v~~wd~~~~~~~~~~~---~h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~~~~~~~H~~~V~~v~~s  308 (344)
T 4gqb_B          232 FGDENGTVSLVDTKSTSCVLSSA---VHSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSELFRSQAHRDFVRDATWS  308 (344)
T ss_dssp             EEETTSEEEEEESCC--CCEEEE---CCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTCCEEEEECCCSSCEEEEEEC
T ss_pred             EeccCCcEEEEECCCCcEEEEEc---CCCCCEEEEEEccCCCeEEEEEeCCCeEEEEECCCCcEEEEcCCCCCEEEEEEe
Confidence            99999999999999988776654   689999999999998 57999999999999999999887665567789999999


Q ss_pred             cCCCEEEEcccccC
Q 021399          242 PLLDHVVLGGGQDA  255 (313)
Q Consensus       242 p~~~~~~~~~~~~~  255 (313)
                      |++..++++++.|+
T Consensus       309 p~~~~llas~s~D~  322 (344)
T 4gqb_B          309 PLNHSLLTTVGWDH  322 (344)
T ss_dssp             SSSTTEEEEEETTS
T ss_pred             CCCCeEEEEEcCCC
Confidence            99998887777664

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=100.00  E-value=2.4e-35  Score=256.91  Aligned_cols=280  Identities=16%  Similarity=0.216  Sum_probs=215.7

Q ss_pred             cccccccceeEEEEccCC-CEEEEeeCCCCeEEEeCCCCcEEEEec--CCCCceEEEEECC-CCCeEEEeeCCCcEEEEE
Q 021399            5 LMKGHERPLTYLKYNKDG-DLLFSCAKDHTPTVWFADNGERLGTYR--GHNGAVWCCDVSR-DSMTLITGSADQTAKLWN   80 (313)
Q Consensus         5 ~l~~h~~~v~~~~fs~~g-~~l~s~s~d~~i~iw~~~~~~~~~~~~--~H~~~V~~~~~~~-~~~~l~s~s~D~~v~vWd   80 (313)
                      .+.+|.+.|.+++|+|++ ++|++|+.|+.|+|||+.+++....+.  +|.+.|.+++|+| ++++|++++.|++|++||
T Consensus        68 ~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd  147 (383)
T 3ei3_B           68 TASPFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQLFVSSIRGATTLRD  147 (383)
T ss_dssp             EECCCSSCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEEEECCCSTTCBEEEEEEETTEEEEEEEEETTTEEEEEE
T ss_pred             eccCCCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccceeeecCCcCCceeEEEeCCCCCCEEEEEeCCCEEEEEE
Confidence            578999999999999999 999999999999999999888777765  6999999999999 678999999999999999


Q ss_pred             CCCCeEEEEecC---CCCeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEccC
Q 021399           81 VETGAQLFTFNF---DSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPL  157 (313)
Q Consensus        81 ~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~  157 (313)
                      +.+.........   ...+.++.|++++..++....     +..+.++++       .+..+..+.+|.+.|.+++|+|+
T Consensus       148 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-----d~~i~i~d~-------~~~~~~~~~~h~~~v~~~~~~~~  215 (383)
T 3ei3_B          148 FSGSVIQVFAKTDSWDYWYCCVDVSVSRQMLATGDS-----TGRLLLLGL-------DGHEIFKEKLHKAKVTHAEFNPR  215 (383)
T ss_dssp             TTSCEEEEEECCCCSSCCEEEEEEETTTTEEEEEET-----TSEEEEEET-------TSCEEEEEECSSSCEEEEEECSS
T ss_pred             CCCCceEEEeccCCCCCCeEEEEECCCCCEEEEECC-----CCCEEEEEC-------CCCEEEEeccCCCcEEEEEECCC
Confidence            997543333222   256889999987665554332     223334433       24467778899999999999999


Q ss_pred             CC-EEEEeeCCCeEEEEECCC----CceeeecccccCceeceEEEEECC-CCCEEEEeeCCCcEEEEECCCCcEEEEEec
Q 021399          158 NR-TIISAGEDAIVRIWDTET----GKLLKESDKETGHKKTITSLAKAA-DGSHFLTGSLDKSAKLWDARTLELIKTYVT  231 (313)
Q Consensus       158 ~~-~i~t~~~d~~i~lwd~~~----~~~~~~~~~~~~h~~~v~~~~~s~-~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~  231 (313)
                      ++ .+++++.|+.|++||+.+    +.++...    +|...|.+++|+| ++.+|++++.|+.|++||++++++...+..
T Consensus       216 ~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~----~~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~  291 (383)
T 3ei3_B          216 CDWLMATSSVDATVKLWDLRNIKDKNSYIAEM----PHEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWSKPDQIII  291 (383)
T ss_dssp             CTTEEEEEETTSEEEEEEGGGCCSTTCEEEEE----ECSSCEEEEEECTTTSCEEEEEESSSEEEEEETTBTTSCSEEEE
T ss_pred             CCCEEEEEeCCCEEEEEeCCCCCcccceEEEe----cCCCceEEEEEcCCCCCEEEEEcCCCcEEEEECCCCcccccccc
Confidence            98 899999999999999987    4444433    4888999999999 999999999999999999999877665542


Q ss_pred             --------CCceeEEEeccCCCEEEEcccccCceeEeeccCCCceeeeeeehhhhhhhccccc--cccceeEEEECCCCC
Q 021399          232 --------ERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKG--HFGPINALAFNPDGK  301 (313)
Q Consensus       232 --------~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--h~~~V~~~~fspdgk  301 (313)
                              ...+. ++|+|.+..++++...++..   ..  .....+++||..+++.+..+.+  |.+.+..++|+|||+
T Consensus       292 ~~~~~~~~~~~~~-~~~~p~~~~~~~~~s~dg~~---s~--s~d~~i~iwd~~~~~~~~~l~~~~~~~~~~~~~~s~~g~  365 (383)
T 3ei3_B          292 HPHRQFQHLTPIK-ATWHPMYDLIVAGRYPDDQL---LL--NDKRTIDIYDANSGGLVHQLRDPNAAGIISLNKFSPTGD  365 (383)
T ss_dssp             CCBCCCTTSCCCC-CEECSSSSEEEEECBCCTTT---CT--TCCCCEEEEETTTCCEEEEECBTTBCSCCCEEEECTTSS
T ss_pred             ccccccccccceE-EeccCCCCceEEEecCCccc---cc--CCCCeEEEEecCCCceeeeecCCCCCceEEEEEEecCcc
Confidence                    12233 46777776666554433322   11  1122467788777777777776  567888889999999


Q ss_pred             eeEEE
Q 021399          302 RYGFL  306 (313)
Q Consensus       302 ~~~~~  306 (313)
                      .++..
T Consensus       366 ~l~s~  370 (383)
T 3ei3_B          366 VLASG  370 (383)
T ss_dssp             EEEEE
T ss_pred             EEEEe
Confidence            88764

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=100.00  E-value=1.6e-37  Score=270.00  Aligned_cols=238  Identities=17%  Similarity=0.188  Sum_probs=189.4

Q ss_pred             cccccccccceeEEEEccCCCEEEEeeCCCCeEEEeCCCC--cEEEEecCCCCceEEEEECCCCCeEEEeeCCCcEEEEE
Q 021399            3 PILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNG--ERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWN   80 (313)
Q Consensus         3 ~~~l~~h~~~v~~~~fs~~g~~l~s~s~d~~i~iw~~~~~--~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~v~vWd   80 (313)
                      |.+++.|.++|.+++|+|+|++|++|+.|+.|+|||..++  +.+.++.+|.+.|.+++|+|++++|++++.|++|++||
T Consensus         4 ~~~~~~~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~v~vwd   83 (377)
T 3dwl_C            4 SQVLHILPKPSYEHAFNSQRTEFVTTTATNQVELYEQDGNGWKHARTFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYE   83 (377)
T ss_dssp             EEEEEECSSCCSCCEECSSSSEEECCCSSSCBCEEEEETTEEEECCCBCCCSSCEEEEEECTTTCCEEEEETTSSEEEC-
T ss_pred             ceeEecCCCcEEEEEECCCCCEEEEecCCCEEEEEEccCCceEEEEEEecCCceEEEEEEeCCCCEEEEEeCCCeEEEEE
Confidence            5567778889999999999999999999999999999988  78889999999999999999999999999999999999


Q ss_pred             CCCCeEEEEecCCCCeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEccCCCE
Q 021399           81 VETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRT  160 (313)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~  160 (313)
                      +.+++.                                                 ......+.+|...|.++.|+|++++
T Consensus        84 ~~~~~~-------------------------------------------------~~~~~~~~~~~~~v~~~~~~~~~~~  114 (377)
T 3dwl_C           84 KRPDGT-------------------------------------------------WKQTLVLLRLNRAATFVRWSPNEDK  114 (377)
T ss_dssp             -----C-------------------------------------------------CCCEEECCCCSSCEEEEECCTTSSC
T ss_pred             cCCCCc-------------------------------------------------eeeeeEecccCCceEEEEECCCCCE
Confidence            876530                                                 0012233457788999999999999


Q ss_pred             EEEeeCCCeEEEEECCCCce---eeecccccCceeceEEEEECCCCCEEEEeeCCCcEEEEECC----------------
Q 021399          161 IISAGEDAIVRIWDTETGKL---LKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDAR----------------  221 (313)
Q Consensus       161 i~t~~~d~~i~lwd~~~~~~---~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~dg~i~iwd~~----------------  221 (313)
                      |++++.|+.|++||+++++.   ...+.  ..|...|.+++|+|++++|++++.|++|++||++                
T Consensus       115 l~~~~~d~~i~iwd~~~~~~~~~~~~~~--~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~  192 (377)
T 3dwl_C          115 FAVGSGARVISVCYFEQENDWWVSKHLK--RPLRSTILSLDWHPNNVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSR  192 (377)
T ss_dssp             CEEEESSSCEEECCC-----CCCCEEEC--SSCCSCEEEEEECTTSSEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSC
T ss_pred             EEEEecCCeEEEEEECCcccceeeeEee--cccCCCeEEEEEcCCCCEEEEEeCCCEEEEEEEEecccCCCccccccccc
Confidence            99999999999999988763   33332  1289999999999999999999999999999985                


Q ss_pred             --CCcEEEEEecCCceeEEEeccCCCEEEEcccccCceeEeeccCCCceeeeeeehhhhhh----hccccccccceeEEE
Q 021399          222 --TLELIKTYVTERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEE----IGGVKGHFGPINALA  295 (313)
Q Consensus       222 --~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~h~~~V~~~~  295 (313)
                        +++++..+.+...+.+++|+|++..+++++. |+             .+++||..+++.    +..+.+|..+|++++
T Consensus       193 ~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~-d~-------------~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~  258 (377)
T 3dwl_C          193 LPFNTVCAEYPSGGWVHAVGFSPSGNALAYAGH-DS-------------SVTIAYPSAPEQPPRALITVKLSQLPLRSLL  258 (377)
T ss_dssp             CCEEEEEECCCCSSSEEEEEECTTSSCEEEEET-TT-------------EEC-CEECSTTSCEEECCCEECSSSCEEEEE
T ss_pred             cchhhhhhcccCCceEEEEEECCCCCEEEEEeC-CC-------------cEEEEECCCCCCcceeeEeecCCCCceEEEE
Confidence              3455555555667999999999987776543 22             345666666655    677889999999999


Q ss_pred             ECCCCCeeEE
Q 021399          296 FNPDGKRYGF  305 (313)
Q Consensus       296 fspdgk~~~~  305 (313)
                      |+|||+.++.
T Consensus       259 ~s~~~~~l~~  268 (377)
T 3dwl_C          259 WANESAIVAA  268 (377)
T ss_dssp             EEETTEEEEE
T ss_pred             EcCCCCEEEE
Confidence            9999998764

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=100.00  E-value=7.5e-35  Score=247.97  Aligned_cols=231  Identities=19%  Similarity=0.266  Sum_probs=188.7

Q ss_pred             ccccccccceeEEEEccCCCEEEEeeCCCCeEEEeCCCCcEEEEecCCCCceEEEEECCCCCeEEEeeCCCcEEEEECCC
Q 021399            4 ILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVET   83 (313)
Q Consensus         4 ~~l~~h~~~v~~~~fs~~g~~l~s~s~d~~i~iw~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~v~vWd~~~   83 (313)
                      ..+.+|...|.+++|+|+|++|++|+.|++|++||+.+++.+.++.+|.+.|.+++|+|++++++||+.|++|++||++.
T Consensus        59 ~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~v~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~~  138 (319)
T 3frx_A           59 RSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKG  138 (319)
T ss_dssp             EEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSCEEEEEETTSCEEEEETTS
T ss_pred             eEEeCCcccEEEEEECCCCCEEEEEeCCCEEEEEECCCCCeeEEEccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCC
Confidence            36889999999999999999999999999999999999999999999999999999999999999999999999999976


Q ss_pred             CeEEEEecCCCCeeEEEeecCC-------eEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEcc
Q 021399           84 GAQLFTFNFDSPARSVDFAVGD-------KLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGP  156 (313)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~  156 (313)
                      ........+...+..+.+.|..       .++....+.      .+++|++.      .......+.+|...|.+++|+|
T Consensus       139 ~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~l~s~~~d~------~i~~wd~~------~~~~~~~~~~h~~~v~~~~~sp  206 (319)
T 3frx_A          139 QCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDK------MVKAWNLN------QFQIEADFIGHNSNINTLTASP  206 (319)
T ss_dssp             CEEEEECCCSSCEEEEEECCC------CCEEEEEETTS------CEEEEETT------TTEEEEEECCCCSCEEEEEECT
T ss_pred             CeEEEEeccCCcEEEEEEccCCCCCCCccEEEEEeCCC------EEEEEECC------cchhheeecCCCCcEEEEEEcC
Confidence            5443334456677788887643       233333333      23334331      2345567789999999999999


Q ss_pred             CCCEEEEeeCCCeEEEEECCCCceeeecccccCceeceEEEEECCCCCEEEEeeCCCcEEEEECCCCcEEEEEec-----
Q 021399          157 LNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVT-----  231 (313)
Q Consensus       157 ~~~~i~t~~~d~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~-----  231 (313)
                      ++++|++++.|+.|++||+.+++.+..+.    +...+.+++|+|++.++++++.+ .+++|++++...+..+..     
T Consensus       207 ~g~~l~s~~~dg~i~iwd~~~~~~~~~~~----~~~~v~~~~~sp~~~~la~~~~~-~i~v~~~~~~~~~~~~~~~~~~~  281 (319)
T 3frx_A          207 DGTLIASAGKDGEIMLWNLAAKKAMYTLS----AQDEVFSLAFSPNRYWLAAATAT-GIKVFSLDPQYLVDDLRPEFAGY  281 (319)
T ss_dssp             TSSEEEEEETTCEEEEEETTTTEEEEEEE----CCSCEEEEEECSSSSEEEEEETT-EEEEEEETTEEEEEEECCCCTTC
T ss_pred             CCCEEEEEeCCCeEEEEECCCCcEEEEec----CCCcEEEEEEcCCCCEEEEEcCC-CcEEEEeCcCeeeeccCcccccc
Confidence            99999999999999999999988776654    34679999999999999888755 599999998877766532     


Q ss_pred             ----CCceeEEEeccCCCEEEEcc
Q 021399          232 ----ERPVNAVTMSPLLDHVVLGG  251 (313)
Q Consensus       232 ----~~~~~~~~~~p~~~~~~~~~  251 (313)
                          ...+.+++|+|+++.+++++
T Consensus       282 ~~~~~~~v~~~~~spdg~~l~sg~  305 (319)
T 3frx_A          282 SKAAEPHAVSLAWSADGQTLFAGY  305 (319)
T ss_dssp             CGGGCCCEEEEEECTTSSEEEEEE
T ss_pred             ccCcCcceeEEEECCCCCEEEEee
Confidence                23578999999999887654

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=100.00  E-value=9e-35  Score=251.68  Aligned_cols=289  Identities=20%  Similarity=0.230  Sum_probs=218.5

Q ss_pred             cccccccccceeEEEEccCCCEEEEeeCCCCeEEEeCCCCc--EEEEecCCCCceEEEEECCCCCeEEEeeCCCcEEEEE
Q 021399            3 PILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGE--RLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWN   80 (313)
Q Consensus         3 ~~~l~~h~~~v~~~~fs~~g~~l~s~s~d~~i~iw~~~~~~--~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~v~vWd   80 (313)
                      |.++..|.++|.+++|+|++++|++++.|+.|++||..+++  .+.++.+|...|.+++|+|++++|++++.|+.|++||
T Consensus         1 ~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd   80 (372)
T 1k8k_C            1 MAYHSFLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWT   80 (372)
T ss_dssp             -CEEESCSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEE
T ss_pred             CceecccCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCcEEeeeeecCCCCcccEEEEeCCCCEEEEEcCCCeEEEEE
Confidence            56778899999999999999999999999999999999987  8899999999999999999999999999999999999


Q ss_pred             CCCCeEEEEe---cCCCCeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCc-eEEEecCCCCceEEEEEcc
Q 021399           81 VETGAQLFTF---NFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGE-SVLILKGPQGRINRAVWGP  156 (313)
Q Consensus        81 ~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~~~~~  156 (313)
                      +++++.....   .+...+..+.|.+++..++....     +..+.++++....   ... .......|...|.++.|+|
T Consensus        81 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-----d~~v~i~d~~~~~---~~~~~~~~~~~~~~~i~~~~~~~  152 (372)
T 1k8k_C           81 LKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSG-----SRVISICYFEQEN---DWWVCKHIKKPIRSTVLSLDWHP  152 (372)
T ss_dssp             EETTEEEEEEECCCCSSCEEEEEECTTSSEEEEEET-----TSSEEEEEEETTT---TEEEEEEECTTCCSCEEEEEECT
T ss_pred             CCCCeeeeeEEeecCCCceeEEEECCCCCEEEEEeC-----CCEEEEEEecCCC---cceeeeeeecccCCCeeEEEEcC
Confidence            9888754443   34567889999987655544332     2223344433211   001 1223356788999999999


Q ss_pred             CCCEEEEeeCCCeEEEEECC------------------CCceeeecccccCceeceEEEEECCCCCEEEEeeCCCcEEEE
Q 021399          157 LNRTIISAGEDAIVRIWDTE------------------TGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLW  218 (313)
Q Consensus       157 ~~~~i~t~~~d~~i~lwd~~------------------~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~dg~i~iw  218 (313)
                      +++++++++.|+.|++||+.                  .++.+..+.   +|...+.+++|+|++++|++++.|+.|++|
T Consensus       153 ~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~  229 (372)
T 1k8k_C          153 NSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESS---SSCGWVHGVCFSANGSRVAWVSHDSTVCLA  229 (372)
T ss_dssp             TSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECC---CCSSCEEEEEECSSSSEEEEEETTTEEEEE
T ss_pred             CCCEEEEEcCCCCEEEEEcccccccccccccccccccchhhheEecC---CCCCeEEEEEECCCCCEEEEEeCCCEEEEE
Confidence            99999999999999999954                  455555443   688899999999999999999999999999


Q ss_pred             ECCCCcEEEEEec-CCceeEEEeccCCCEEEEcccccCceeEeeccCC--Ccee------------------eeee---e
Q 021399          219 DARTLELIKTYVT-ERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRA--GKFE------------------AKFF---D  274 (313)
Q Consensus       219 d~~~~~~~~~~~~-~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~--~~~~------------------~~~~---~  274 (313)
                      |+++++++..+.. ..++.+++|+|++..++++  . ++.+.+|+.+.  +.+.                  ++.|   +
T Consensus       230 d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~--~-d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  306 (372)
T 1k8k_C          230 DADKKMAVATLASETLPLLAVTFITESSLVAAG--H-DCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLD  306 (372)
T ss_dssp             EGGGTTEEEEEECSSCCEEEEEEEETTEEEEEE--T-TSSCEEEEEETTTTEEEECCCCCCC--------CHHHHHHHCC
T ss_pred             ECCCCceeEEEccCCCCeEEEEEecCCCEEEEE--e-CCeEEEEEccCcCceEEEeeccCccccchhhhcchhhhhhhcc
Confidence            9999999988864 4589999999988755543  2 34455666555  3221                  1111   1


Q ss_pred             hhhhhhh------ccc-cccccceeEEEEC-CCC---CeeEEE
Q 021399          275 KILQEEI------GGV-KGHFGPINALAFN-PDG---KRYGFL  306 (313)
Q Consensus       275 ~~~~~~~------~~~-~~h~~~V~~~~fs-pdg---k~~~~~  306 (313)
                      .. ++..      ..+ .+|.++|++++|+ ++|   +.++..
T Consensus       307 ~~-~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~g~~~~~l~s~  348 (372)
T 1k8k_C          307 KK-ASSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTT  348 (372)
T ss_dssp             CC-C---------CCCSSSSSSCEEEEEEEESTTTSCSEEEEE
T ss_pred             cc-cccccCccccccccccccCCcceeEEecCCCcceeeEEEe
Confidence            10 1111      333 4999999999955 777   777654

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=100.00  E-value=1.4e-34  Score=246.80  Aligned_cols=272  Identities=15%  Similarity=0.186  Sum_probs=213.8

Q ss_pred             cccccccccceeEEEEccCCCEEEEeeCCCCeEEEeCCCCcE---EEEec--CCCCceEEEEECCCCCeEEEeeCCCcEE
Q 021399            3 PILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGER---LGTYR--GHNGAVWCCDVSRDSMTLITGSADQTAK   77 (313)
Q Consensus         3 ~~~l~~h~~~v~~~~fs~~g~~l~s~s~d~~i~iw~~~~~~~---~~~~~--~H~~~V~~~~~~~~~~~l~s~s~D~~v~   77 (313)
                      ++...+|...|.+++|+|++++|++++ |+.|++||+.+++.   +..+.  +|...|.+++|+|+++++++++.|+.|+
T Consensus        44 ~~~~~~h~~~v~~~~~~~~~~~l~~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~  122 (337)
T 1gxr_A           44 QINTLNHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLS  122 (337)
T ss_dssp             EEEEECCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEE
T ss_pred             cceeccCCCceEEEEEecCCcEEEEcC-CCeEEEEECCCCCceeeeecccccCCCCcEEEEEEcCCCCEEEEEcCCCcEE
Confidence            344568999999999999999999999 99999999987753   33333  7999999999999999999999999999


Q ss_pred             EEECCCCeE--EEEe-cCCCCeeEEEeecCCeEEEEE-CCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEE
Q 021399           78 LWNVETGAQ--LFTF-NFDSPARSVDFAVGDKLAVIT-TDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAV  153 (313)
Q Consensus        78 vWd~~~~~~--~~~~-~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~  153 (313)
                      +||+.+++.  ...+ .....+..+.|.+++..++.. .+.      .+.++++      ..++.+..+..|...+..+.
T Consensus       123 ~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg------~v~~~d~------~~~~~~~~~~~~~~~i~~~~  190 (337)
T 1gxr_A          123 IWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDG------NIAVWDL------HNQTLVRQFQGHTDGASCID  190 (337)
T ss_dssp             EEECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEETTS------CEEEEET------TTTEEEEEECCCSSCEEEEE
T ss_pred             EEECCCCCcceeeecccCCCceEEEEECCCCCEEEEEeCCC------cEEEEeC------CCCceeeeeecccCceEEEE
Confidence            999998763  3333 245567888999876554443 332      2333332      12456667788999999999


Q ss_pred             EccCCCEEEEeeCCCeEEEEECCCCceeeecccccCceeceEEEEECCCCCEEEEeeCCCcEEEEECCCCcEEEEEecCC
Q 021399          154 WGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTER  233 (313)
Q Consensus       154 ~~~~~~~i~t~~~d~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~  233 (313)
                      |+|+++.+++++.|+.|++||+++++.+....    +...+.+++|+|+++++++++.|+.|++||+++++......+..
T Consensus       191 ~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~----~~~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~  266 (337)
T 1gxr_A          191 ISNDGTKLWTGGLDNTVRSWDLREGRQLQQHD----FTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQLHLHES  266 (337)
T ss_dssp             ECTTSSEEEEEETTSEEEEEETTTTEEEEEEE----CSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSCEEEECCCSS
T ss_pred             ECCCCCEEEEEecCCcEEEEECCCCceEeeec----CCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCCeEEEcCCcc
Confidence            99999999999999999999999888766543    66789999999999999999999999999999988765555677


Q ss_pred             ceeEEEeccCCCEEEEcccccCceeEeeccCCCceeeeeeehhhhhhhccccccccceeEEEECCCCCeeEEE
Q 021399          234 PVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKRYGFL  306 (313)
Q Consensus       234 ~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~fspdgk~~~~~  306 (313)
                      .+.+++|+|++..+++++. + +.+            ++||..+++.+. ...|..+|++++|+|||+.++..
T Consensus       267 ~v~~~~~~~~~~~l~~~~~-d-g~i------------~~~~~~~~~~~~-~~~~~~~v~~~~~s~~~~~l~~~  324 (337)
T 1gxr_A          267 CVLSLKFAYCGKWFVSTGK-D-NLL------------NAWRTPYGASIF-QSKESSSVLSCDISVDDKYIVTG  324 (337)
T ss_dssp             CEEEEEECTTSSEEEEEET-T-SEE------------EEEETTTCCEEE-EEECSSCEEEEEECTTSCEEEEE
T ss_pred             ceeEEEECCCCCEEEEecC-C-CcE------------EEEECCCCeEEE-EecCCCcEEEEEECCCCCEEEEe
Confidence            8999999999998776543 2 333            445544443332 23588999999999999988764

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=100.00  E-value=4.9e-35  Score=255.78  Aligned_cols=274  Identities=13%  Similarity=0.079  Sum_probs=211.7

Q ss_pred             ccccccccceeEEEEccCCCEEEEeeCCCCeEEEeCCCCc------EEEEecCCCCceEEEEECCC----C---CeEEEe
Q 021399            4 ILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGE------RLGTYRGHNGAVWCCDVSRD----S---MTLITG   70 (313)
Q Consensus         4 ~~l~~h~~~v~~~~fs~~g~~l~s~s~d~~i~iw~~~~~~------~~~~~~~H~~~V~~~~~~~~----~---~~l~s~   70 (313)
                      .++.+|.+.|.+++|+|  ++|++|+.|+.|++|+..+++      .+..+.+|...|.+++|+|+    +   ++|+++
T Consensus        10 ~~~~~h~~~i~~~~~~~--~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~~l~s~   87 (397)
T 1sq9_A           10 NAGKAHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATT   87 (397)
T ss_dssp             EESSCSSSCEEEEEECS--SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEEE
T ss_pred             hhhhhhhcCeEEEEecC--CeEEEEcCCCEEEEEECCCcccccCCCcceEEecCCCcEEEEEEecccccCCccccEEEEE
Confidence            36889999999999998  799999999999999999988      78899999999999999999    9   999999


Q ss_pred             eCCCcEEEEECCCCeE-----EEEec-C-----CCCeeEEEee----cCCeE-EEE-ECCCceeccccceeeeeee----
Q 021399           71 SADQTAKLWNVETGAQ-----LFTFN-F-----DSPARSVDFA----VGDKL-AVI-TTDPFMELNSAIHVKRIAR----  129 (313)
Q Consensus        71 s~D~~v~vWd~~~~~~-----~~~~~-~-----~~~~~~~~~~----~~~~~-~~~-~~~~~~~~~~~~~~~~~~~----  129 (313)
                      +.|+.|++||+.+++.     ...+. +     ...+..+.|.    +++.. ++. ..+.      .+.++++..    
T Consensus        88 ~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg------~i~iwd~~~~~~~  161 (397)
T 1sq9_A           88 SFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKG------TTYIWKFHPFADE  161 (397)
T ss_dssp             ETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTS------CEEEEEEESSSSH
T ss_pred             cCCCCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCC------cEEEEeCCccccc
Confidence            9999999999987764     44444 3     2788899999    76655 443 3333      334444432    


Q ss_pred             --CCCCCCCceEEEe-------cCCCCceEEEEEccCCCEEEEeeCCCeEEEEECCCCceeeecccccCc---eeceEEE
Q 021399          130 --DPADQGGESVLIL-------KGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGH---KKTITSL  197 (313)
Q Consensus       130 --~~~~~~~~~~~~~-------~~~~~~i~~~~~~~~~~~i~t~~~d~~i~lwd~~~~~~~~~~~~~~~h---~~~v~~~  197 (313)
                        ..... -.+...+       ..|...+.++.|+|++ .+++++.|+.|++||+++++.+..+....+|   ...+.++
T Consensus       162 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~h~~~~~~i~~i  239 (397)
T 1sq9_A          162 SNSLTLN-WSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSV  239 (397)
T ss_dssp             HHHTTTC-CCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEE
T ss_pred             cccceee-ccCcceeeeeeccccCCCCCceEEEECCCc-eEEEEeCCCcEEEEECCCCceeEEEeccccccccCCccceE
Confidence              11110 0111123       4578889999999999 9999999999999999988877665432237   8899999


Q ss_pred             EECCCCCEEEEeeCC---CcEEEEECCCCcEEEEEe--------------cCCceeEEEeccCCCEEEEcccccCceeEe
Q 021399          198 AKAADGSHFLTGSLD---KSAKLWDARTLELIKTYV--------------TERPVNAVTMSPLLDHVVLGGGQDASAVTT  260 (313)
Q Consensus       198 ~~s~~~~~l~s~s~d---g~i~iwd~~~~~~~~~~~--------------~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~  260 (313)
                      +|+|++.+|++++.|   +.|++||+++++++..+.              +...+.+++|+|++..+++++.  ++.+.+
T Consensus       240 ~~~~~~~~l~~~~~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--dg~i~i  317 (397)
T 1sq9_A          240 KFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGW--DGKLRF  317 (397)
T ss_dssp             EECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEET--TSEEEE
T ss_pred             EECCCCCEEEEEecCCCCceEEEEECCCCcccceeccCcccccccccccccCCcEEEEEECCCCCEEEEEeC--CCeEEE
Confidence            999999999999999   999999999999988886              4667999999999988776542  334444


Q ss_pred             eccCCCceeeeeeehhhhhhhcccc------cc---------------ccceeEEEECCCCC
Q 021399          261 TDHRAGKFEAKFFDKILQEEIGGVK------GH---------------FGPINALAFNPDGK  301 (313)
Q Consensus       261 ~~~~~~~~~~~~~~~~~~~~~~~~~------~h---------------~~~V~~~~fspdgk  301 (313)
                      ||.+            +++.+..+.      +|               ..+|++++|+|||+
T Consensus       318 wd~~------------~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~  367 (397)
T 1sq9_A          318 WDVK------------TKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGW  367 (397)
T ss_dssp             EETT------------TTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTT
T ss_pred             EEcC------------CCceeEEEecccCcccchhhhhccccccccccCCceeEEEeccccc
Confidence            5544            444444444      55               99999999999994

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=100.00  E-value=9.6e-35  Score=245.65  Aligned_cols=237  Identities=20%  Similarity=0.282  Sum_probs=192.1

Q ss_pred             ccccccccceeEEEEccCCCEEEEeeCCCCeEEEeCCCCcEEEEecCCCCceEEEEECCCCCeEEEeeCCCcEEEEECCC
Q 021399            4 ILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVET   83 (313)
Q Consensus         4 ~~l~~h~~~v~~~~fs~~g~~l~s~s~d~~i~iw~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~v~vWd~~~   83 (313)
                      ..+.+|..+|.+++|+|++++|++|+.|+.|++||+.+++.+.++++|.+.|.+++|+|++++++||+.|++|++||+++
T Consensus        49 ~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~  128 (304)
T 2ynn_A           49 RSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWEN  128 (304)
T ss_dssp             EEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGG
T ss_pred             EEeeccCCcEEEEEEeCCCCEEEEECCCCEEEEEECCCCcEEEEEeCCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCC
Confidence            35778999999999999999999999999999999999999999999999999999999999999999999999999987


Q ss_pred             Ce-EEEEec-CCCCeeEEEeec-CC-eEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEcc--C
Q 021399           84 GA-QLFTFN-FDSPARSVDFAV-GD-KLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGP--L  157 (313)
Q Consensus        84 ~~-~~~~~~-~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~  157 (313)
                      +. ....+. +...+.++.|.| +. .++.+..+..      +.+|++...     ........++...+..+.+.|  +
T Consensus       129 ~~~~~~~~~~h~~~v~~v~~~p~~~~~l~sgs~D~~------v~iwd~~~~-----~~~~~~~~~~~~~v~~~~~~~~~~  197 (304)
T 2ynn_A          129 NWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRT------VKVWSLGQS-----TPNFTLTTGQERGVNYVDYYPLPD  197 (304)
T ss_dssp             TTEEEEEECCCCSCEEEEEECTTCTTEEEEEETTSE------EEEEETTCS-----SCSEEEECCCTTCEEEEEECCSTT
T ss_pred             CcchhhhhcccCCcEEEEEECCCCCCEEEEEeCCCe------EEEEECCCC-----CccceeccCCcCcEEEEEEEEcCC
Confidence            74 334443 466788999998 33 4555544443      334433211     112223345667788888876  6


Q ss_pred             CCEEEEeeCCCeEEEEECCCCceeeecccccCceeceEEEEECCCCCEEEEeeCCCcEEEEECCCCcEEEEEec-CCcee
Q 021399          158 NRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVT-ERPVN  236 (313)
Q Consensus       158 ~~~i~t~~~d~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~-~~~~~  236 (313)
                      ++++++|+.|+.|++||+++++++..+.   +|...|.+++|+|++.+|++|+.||+|++||+++++++.++.. ...+.
T Consensus       198 ~~~l~s~s~D~~i~iWd~~~~~~~~~~~---~h~~~v~~~~~~p~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~~~~~  274 (304)
T 2ynn_A          198 KPYMITASDDLTIKIWDYQTKSCVATLE---GHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSW  274 (304)
T ss_dssp             CCEEEEEETTSEEEEEETTTTEEEEEEE---CCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEECCSSSSEE
T ss_pred             CCEEEEEcCCCeEEEEeCCCCccceeeC---CCCCCEEEEEECCCCCEEEEEcCCCeEEEEECCCCceeeeccCCCccEE
Confidence            6799999999999999999988877654   6899999999999999999999999999999999999988864 45788


Q ss_pred             EEEeccCCCEE-EEccccc
Q 021399          237 AVTMSPLLDHV-VLGGGQD  254 (313)
Q Consensus       237 ~~~~~p~~~~~-~~~~~~~  254 (313)
                      +++++|.+... +++|.++
T Consensus       275 ~~~~~~~~~~~~~asg~~~  293 (304)
T 2ynn_A          275 CIATHPTGRKNYIASGFDN  293 (304)
T ss_dssp             EEEECTTCGGGCEEEEETT
T ss_pred             EEEECCCCCceEEEEecCC
Confidence            99999988643 4444443

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.9e-34  Score=242.53  Aligned_cols=264  Identities=19%  Similarity=0.218  Sum_probs=212.6

Q ss_pred             ccccccccceeEEEEccCCCEEEEeeCCCCeEEEeCCCCcEEEEecCCCCceEEEEECCCCCeEEEeeCCCcEEEEECCC
Q 021399            4 ILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVET   83 (313)
Q Consensus         4 ~~l~~h~~~v~~~~fs~~g~~l~s~s~d~~i~iw~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~v~vWd~~~   83 (313)
                      .++.+|.+.|.+++| |++++|++++.||.|++||..+++....+..|.+.|.+++|+|+++.+++++.|+.+++|++..
T Consensus        12 ~~l~~h~~~v~~~~~-~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~   90 (313)
T 3odt_A           12 ATLKGHDQDVRDVVA-VDDSKVASVSRDGTVRLWSKDDQWLGTVVYTGQGFLNSVCYDSEKELLLFGGKDTMINGVPLFA   90 (313)
T ss_dssp             EEECCCSSCEEEEEE-EETTEEEEEETTSEEEEEEESSSEEEEEEEECSSCEEEEEEETTTTEEEEEETTSCEEEEETTC
T ss_pred             HHhhCCCCCcEEEEe-cCCCEEEEEEcCCcEEEEECCCCEEEEEeecCCccEEEEEECCCCCEEEEecCCCeEEEEEeee
Confidence            368999999999999 9999999999999999999999999999999999999999999999999999999999999865


Q ss_pred             C---eEEEEe-cCCCCeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEcc-CC
Q 021399           84 G---AQLFTF-NFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGP-LN  158 (313)
Q Consensus        84 ~---~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~  158 (313)
                      .   +....+ .+..++..+.+ .+..++.+..+...      .+++        .......+..|...+..+.+.| ++
T Consensus        91 ~~~~~~~~~~~~~~~~i~~~~~-~~~~l~~~~~d~~i------~~~d--------~~~~~~~~~~~~~~v~~~~~~~~~~  155 (313)
T 3odt_A           91 TSGEDPLYTLIGHQGNVCSLSF-QDGVVISGSWDKTA------KVWK--------EGSLVYNLQAHNASVWDAKVVSFSE  155 (313)
T ss_dssp             CTTSCC-CEECCCSSCEEEEEE-ETTEEEEEETTSEE------EEEE--------TTEEEEEEECCSSCEEEEEEEETTT
T ss_pred             cCCCCcccchhhcccCEEEEEe-cCCEEEEEeCCCCE------EEEc--------CCcEEEecccCCCceeEEEEccCCC
Confidence            4   333333 34567777777 45555555544333      2232        2345667778999999999988 88


Q ss_pred             CEEEEeeCCCeEEEEECCCCceeeecccccCceeceEEEEECCCCCEEEEeeCCCcEEEEECCCCcEEEEEe-cCCceeE
Q 021399          159 RTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYV-TERPVNA  237 (313)
Q Consensus       159 ~~i~t~~~d~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~-~~~~~~~  237 (313)
                      +.+++++.|+.|++||..  +....+.  ..|...+.+++|+|++. +++++.||.|++||+++++++..+. +...+.+
T Consensus       156 ~~l~~~~~d~~i~i~d~~--~~~~~~~--~~~~~~i~~~~~~~~~~-~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~  230 (313)
T 3odt_A          156 NKFLTASADKTIKLWQND--KVIKTFS--GIHNDVVRHLAVVDDGH-FISCSNDGLIKLVDMHTGDVLRTYEGHESFVYC  230 (313)
T ss_dssp             TEEEEEETTSCEEEEETT--EEEEEEC--SSCSSCEEEEEEEETTE-EEEEETTSEEEEEETTTCCEEEEEECCSSCEEE
T ss_pred             CEEEEEECCCCEEEEecC--ceEEEEe--ccCcccEEEEEEcCCCe-EEEccCCCeEEEEECCchhhhhhhhcCCceEEE
Confidence            999999999999999943  3444332  23788999999999998 9999999999999999999998886 5678999


Q ss_pred             EEeccCCCEEEEcccccCceeEeeccCCCceeeeeeehhhhhhhccccccccceeEEEECCCCCee
Q 021399          238 VTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKRY  303 (313)
Q Consensus       238 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~fspdgk~~  303 (313)
                      ++|+|++ .++++ +.++             .+++||..+++.+..+..|..+|++++|+|||+.+
T Consensus       231 ~~~~~~~-~l~~~-~~dg-------------~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~  281 (313)
T 3odt_A          231 IKLLPNG-DIVSC-GEDR-------------TVRIWSKENGSLKQVITLPAISIWSVDCMSNGDII  281 (313)
T ss_dssp             EEECTTS-CEEEE-ETTS-------------EEEEECTTTCCEEEEEECSSSCEEEEEECTTSCEE
T ss_pred             EEEecCC-CEEEE-ecCC-------------EEEEEECCCCceeEEEeccCceEEEEEEccCCCEE
Confidence            9999998 44443 3332             34566666666667778899999999999999844

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=100.00  E-value=4.1e-34  Score=242.27  Aligned_cols=268  Identities=17%  Similarity=0.293  Sum_probs=205.6

Q ss_pred             eeEEEEccCCCEEEEeeCCCCeEEEeCCCCcEEEEec--CCCCceEEEEECCCCCeEEEeeCCCcEEEEECCCCeEEEEe
Q 021399           13 LTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYR--GHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTF   90 (313)
Q Consensus        13 v~~~~fs~~g~~l~s~s~d~~i~iw~~~~~~~~~~~~--~H~~~V~~~~~~~~~~~l~s~s~D~~v~vWd~~~~~~~~~~   90 (313)
                      .++|+||+++ .|++| .|++|+|||.++++.+..++  +|...|.+++|+|++++++||+.|++|++||+++++.+..+
T Consensus        28 ~~~l~WS~~~-~lAvg-~D~tV~iWd~~tg~~~~~~~~~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~~~~~~  105 (318)
T 4ggc_A           28 LNLVDWSSGN-VLAVA-LDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNM  105 (318)
T ss_dssp             CBCEEECTTS-EEEEE-ETTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEE
T ss_pred             ceEEEECCCC-EEEEE-eCCEEEEEECCCCCEEEEEEecCCCCeEEEEEECCCCCEEEEEECCCcEEEeecCCceeEEEe
Confidence            4789999986 66654 59999999999999887765  67788999999999999999999999999999999988776


Q ss_pred             cCC-CCeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEccCCCEEEEeeCCCe
Q 021399           91 NFD-SPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAI  169 (313)
Q Consensus        91 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~t~~~d~~  169 (313)
                      ... .....+.+. +..++....+....      .+.     .......+..+.+|...+..+.+.+.++++++++.|+.
T Consensus       106 ~~h~~~~~~~~~~-~~~l~s~~~~~~~~------~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~  173 (318)
T 4ggc_A          106 TSHSARVGSLSWN-SYILSSGSRSGHIH------HHD-----VRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNL  173 (318)
T ss_dssp             ECCSSCEEEEEEE-TTEEEEEETTSEEE------EEE-----TTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSC
T ss_pred             cCccceEEEeecC-CCEEEEEecCCceE------eee-----cCCCceeEEEEcCccCceEEEEEcCCCCEEEEEecCcc
Confidence            533 233332222 23333333222111      111     11223456677889999999999999999999999999


Q ss_pred             EEEEECCCCceeee-cccccCceeceEEEEECCCCCE---EEEeeCCCcEEEEECCCCcEEEEEecCCceeEEEeccCCC
Q 021399          170 VRIWDTETGKLLKE-SDKETGHKKTITSLAKAADGSH---FLTGSLDKSAKLWDARTLELIKTYVTERPVNAVTMSPLLD  245 (313)
Q Consensus       170 i~lwd~~~~~~~~~-~~~~~~h~~~v~~~~~s~~~~~---l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~p~~~  245 (313)
                      |++||+.+++.... ......|...|.++++++++..   +++++.+++|++||.+.............+..++|+|.++
T Consensus       174 i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~~~~~~~~~v~~~~~~~~~~  253 (318)
T 4ggc_A          174 VNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSILWSPHYK  253 (318)
T ss_dssp             EEEEESSCBTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEEEEEECSSCEEEEEEETTTT
T ss_pred             eeEEECCCCcccccceeeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEecccccccccccceeeeeeeeeccccc
Confidence            99999987654222 1223457788999999987764   3467889999999999999888888888899999999999


Q ss_pred             EEEEcccccCceeEeeccCCCceeeeeeehhhhhhhccccccccceeEEEECCCCCeeEEE
Q 021399          246 HVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKRYGFL  306 (313)
Q Consensus       246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~fspdgk~~~~~  306 (313)
                      .++++++..++            .+++||..+++.+..+.+|.++|++++|+|||++|+-.
T Consensus       254 ~~~~~sg~~d~------------~i~iwd~~~~~~~~~l~gH~~~V~~l~~spdg~~l~S~  302 (318)
T 4ggc_A          254 ELISGHGFAQN------------QLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASA  302 (318)
T ss_dssp             EEEEEECTTTC------------CEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEE
T ss_pred             ceEEEEEcCCC------------EEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEE
Confidence            98887654433            34567777777788889999999999999999998753

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=100.00  E-value=3.3e-35  Score=258.31  Aligned_cols=288  Identities=14%  Similarity=0.222  Sum_probs=214.1

Q ss_pred             cccccccccceeEEEEccCCCEEEEeeCCCCeEEEeCCC----CcEEEEecCCCCceEEEEECCC-CCeEEEeeCCCcEE
Q 021399            3 PILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADN----GERLGTYRGHNGAVWCCDVSRD-SMTLITGSADQTAK   77 (313)
Q Consensus         3 ~~~l~~h~~~v~~~~fs~~g~~l~s~s~d~~i~iw~~~~----~~~~~~~~~H~~~V~~~~~~~~-~~~l~s~s~D~~v~   77 (313)
                      |+....|...|.+++|+|++++|++++.|+.|++|++.+    .+.+..+.+|.+.|.+++|+|+ +++|++++.|++|+
T Consensus        60 ~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~  139 (416)
T 2pm9_A           60 PIASLQVDSKFNDLDWSHNNKIIAGALDNGSLELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIF  139 (416)
T ss_dssp             CSCCCCCSSCEEEEEECSSSSCEEEEESSSCEEEECCSSTTSCCCEEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEE
T ss_pred             EEEEEecCCceEEEEECCCCCeEEEEccCCeEEEeecccccccccchhhccCCccceEEEEEcCCCCCEEEEEcCCCeEE
Confidence            455567999999999999999999999999999999987    4588899999999999999998 88999999999999


Q ss_pred             EEECCCCe------EEEEe----cCCCCeeEEEeecC-CeEEEEE-CCCceeccccceeeeeeeCCCCCCCceEEEecCC
Q 021399           78 LWNVETGA------QLFTF----NFDSPARSVDFAVG-DKLAVIT-TDPFMELNSAIHVKRIARDPADQGGESVLILKGP  145 (313)
Q Consensus        78 vWd~~~~~------~~~~~----~~~~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  145 (313)
                      +||+.+++      .....    .+...+..+.|.++ ..+++.. .+.      .+.++++.      .+..+..+..+
T Consensus       140 iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg------~v~iwd~~------~~~~~~~~~~~  207 (416)
T 2pm9_A          140 IWDMNKCTESPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSN------FASIWDLK------AKKEVIHLSYT  207 (416)
T ss_dssp             BCBTTTTSSCTTTCCCBCCCCSCCSSCCCCEEEECSSCTTEEEEESSSS------CEEEEETT------TTEEEEEECCC
T ss_pred             EEECCCCccccccccccccccccCCCCCeeEEEeCCCCCcEEEEEcCCC------CEEEEECC------CCCcceEEecc
Confidence            99998876      32222    24567888999986 4444443 332      23333321      23344455544


Q ss_pred             ------CCceEEEEEccCC-CEEEEeeCCC---eEEEEECCCCc-eeeecccccCceeceEEEEECC-CCCEEEEeeCCC
Q 021399          146 ------QGRINRAVWGPLN-RTIISAGEDA---IVRIWDTETGK-LLKESDKETGHKKTITSLAKAA-DGSHFLTGSLDK  213 (313)
Q Consensus       146 ------~~~i~~~~~~~~~-~~i~t~~~d~---~i~lwd~~~~~-~~~~~~~~~~h~~~v~~~~~s~-~~~~l~s~s~dg  213 (313)
                            ...+.++.|+|++ ..+++++.|+   .|++||++++. ++..+.  .+|...|.+++|+| ++.+|++++.|+
T Consensus       208 ~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~~~~~~~--~~~~~~v~~~~~s~~~~~~l~s~~~dg  285 (416)
T 2pm9_A          208 SPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNANTPLQTLN--QGHQKGILSLDWCHQDEHLLLSSGRDN  285 (416)
T ss_dssp             CCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTTSCSBCCC--SCCSSCEEEEEECSSCSSCEEEEESSS
T ss_pred             ccccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCCCCcEEee--cCccCceeEEEeCCCCCCeEEEEeCCC
Confidence                  7889999999997 6899999998   99999998763 333221  16889999999999 999999999999


Q ss_pred             cEEEEECCCCcEEEEEe-cCCceeEEEeccCCCEEEEcccccCceeEeeccCCCceeeee--------------eehhh-
Q 021399          214 SAKLWDARTLELIKTYV-TERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKF--------------FDKIL-  277 (313)
Q Consensus       214 ~i~iwd~~~~~~~~~~~-~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~-  277 (313)
                      .|++||+++++++..+. +...+.+++|+|++..++++++.| +.+.+|+..........              |.... 
T Consensus       286 ~v~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~d-~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  364 (416)
T 2pm9_A          286 TVLLWNPESAEQLSQFPARGNWCFKTKFAPEAPDLFACASFD-NKIEVQTLQNLTNTLDEQETETKQQESETDFWNNVSR  364 (416)
T ss_dssp             EEEEECSSSCCEEEEEECSSSCCCCEEECTTCTTEEEECCSS-SEEEEEESCCCCCSSCC--------------------
T ss_pred             CEEEeeCCCCccceeecCCCCceEEEEECCCCCCEEEEEecC-CcEEEEEccCCCCCcccccccccccCCcccccccccc
Confidence            99999999999998886 466799999999985455554444 44666665544322111              11000 


Q ss_pred             ---hh-----hhccccccccceeEEEECCCCCeeEE
Q 021399          278 ---QE-----EIGGVKGHFGPINALAFNPDGKRYGF  305 (313)
Q Consensus       278 ---~~-----~~~~~~~h~~~V~~~~fspdgk~~~~  305 (313)
                         ..     .+.....|..+|.+++|+|||+.+|+
T Consensus       365 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~la~  400 (416)
T 2pm9_A          365 EESKEKPSVFHLQAPTWYGEPSPAAHWAFGGKLVQI  400 (416)
T ss_dssp             --CCSCCCSSCCCCCSTTCCCSCCCEEETTTEEECB
T ss_pred             cccccccccccccCCccccCCccceEEeeCCeEEEE
Confidence               00     00112237889999999999999875

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=100.00  E-value=7.9e-34  Score=250.62  Aligned_cols=268  Identities=18%  Similarity=0.319  Sum_probs=207.7

Q ss_pred             eeEEEEccCCCEEEEeeCCCCeEEEeCCCCcEEEEec--CCCCceEEEEECCCCCeEEEeeCCCcEEEEECCCCeEEEEe
Q 021399           13 LTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYR--GHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTF   90 (313)
Q Consensus        13 v~~~~fs~~g~~l~s~s~d~~i~iw~~~~~~~~~~~~--~H~~~V~~~~~~~~~~~l~s~s~D~~v~vWd~~~~~~~~~~   90 (313)
                      ++.|.||++ +.|++| .|++|+|||..+++....++  +|...|++++|+|+|++|++|+.|++|++||+++++.+..+
T Consensus       108 ~~~l~wS~~-n~lAvg-ld~tV~lWd~~tg~~~~~~~~~~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~~~~~~  185 (420)
T 4gga_A          108 LNLVDWSSG-NVLAVA-LDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNM  185 (420)
T ss_dssp             CBCEEECTT-SEEEEE-ETTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEE
T ss_pred             ceeEEECCC-CEEEEE-eCCEEEEEECCCCCEEEEEEecCCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCCcEEEEE
Confidence            467999975 466655 59999999999999877665  67788999999999999999999999999999999888776


Q ss_pred             cC-CCCeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEccCCCEEEEeeCCCe
Q 021399           91 NF-DSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAI  169 (313)
Q Consensus        91 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~t~~~d~~  169 (313)
                      .. ...+.++.+. +..++.+..+...      ..++.     ......+..+.+|...+..+.++|.++++++++.|+.
T Consensus       186 ~~h~~~v~~~s~~-~~~l~sgs~d~~i------~~~d~-----~~~~~~~~~~~~h~~~~~~~~~~~~g~~l~s~~~D~~  253 (420)
T 4gga_A          186 TSHSARVGSLSWN-SYILSSGSRSGHI------HHHDV-----RVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNL  253 (420)
T ss_dssp             CCCSSCEEEEEEE-TTEEEEEETTSEE------EEEET-----TSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSC
T ss_pred             eCCCCceEEEeeC-CCEEEEEeCCCce------eEeee-----cccceeeEEecccccceeeeeecCCCCeeeeeecccc
Confidence            53 3445454443 2333333333222      11211     1123456678899999999999999999999999999


Q ss_pred             EEEEECCCCceee-ecccccCceeceEEEEECCCCCE-EEE--eeCCCcEEEEECCCCcEEEEEecCCceeEEEeccCCC
Q 021399          170 VRIWDTETGKLLK-ESDKETGHKKTITSLAKAADGSH-FLT--GSLDKSAKLWDARTLELIKTYVTERPVNAVTMSPLLD  245 (313)
Q Consensus       170 i~lwd~~~~~~~~-~~~~~~~h~~~v~~~~~s~~~~~-l~s--~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~p~~~  245 (313)
                      +++||..+++... .......|...|.+++|+|++.. +++  |+.|++|++||+++++++..+.....+.++.|+|.++
T Consensus       254 v~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~~~~~~~~~~v~~~~~~~~~~  333 (420)
T 4gga_A          254 VNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSILWSPHYK  333 (420)
T ss_dssp             EEEEESSCCSSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTTEEEEEEECSSCEEEEEEETTTT
T ss_pred             ceEEeeccccccceeeeeecccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCccccceeeccccceeeeeecCCCC
Confidence            9999987765321 12223468889999999997654 444  5689999999999999999998888899999999999


Q ss_pred             EEEEcccccCceeEeeccCCCceeeeeeehhhhhhhccccccccceeEEEECCCCCeeEEE
Q 021399          246 HVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKRYGFL  306 (313)
Q Consensus       246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~fspdgk~~~~~  306 (313)
                      .+++++|..++.            +++||..+++.+..+.+|.++|++++|+|||++++-.
T Consensus       334 ~lv~~sg~~d~~------------I~iwd~~~~~~v~~l~gH~~~V~~l~~spdg~~l~S~  382 (420)
T 4gga_A          334 ELISGHGFAQNQ------------LVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASA  382 (420)
T ss_dssp             EEEEEECTTTCC------------EEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEE
T ss_pred             eEEEEEecCCCE------------EEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEE
Confidence            998876644333            4567777777788889999999999999999998754

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=100.00  E-value=5.8e-34  Score=282.41  Aligned_cols=289  Identities=20%  Similarity=0.315  Sum_probs=235.4

Q ss_pred             ccccccccceeEEEEccCCCEEEEeeCCCCeEEEeCCCCcEEEEecCCCCceEEEEECCCCCeEEEeeCCCcEEEEECCC
Q 021399            4 ILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVET   83 (313)
Q Consensus         4 ~~l~~h~~~v~~~~fs~~g~~l~s~s~d~~i~iw~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~v~vWd~~~   83 (313)
                      +.+.+|.+.|++++|+|+|++|++|+.|+.|++||..+++.+.++.+|.+.|.+++|+|+++++++++.|++|++||+.+
T Consensus       609 ~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~  688 (1249)
T 3sfz_A          609 LVVRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSAT  688 (1249)
T ss_dssp             EEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTT
T ss_pred             EEEecccccEEEEEECCCCCEEEEEeCCCeEEEEECCCCCEEEEeccCCCCEEEEEEecCCCEEEEEeCCCeEEEEECCC
Confidence            36789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CeEEEEec-CCCCeeEEEeecC--CeEEEE-ECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEccCCC
Q 021399           84 GAQLFTFN-FDSPARSVDFAVG--DKLAVI-TTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNR  159 (313)
Q Consensus        84 ~~~~~~~~-~~~~~~~~~~~~~--~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~  159 (313)
                      ++.+..+. +...+.++.|.++  ..+++. ..+.      .+.+|++.      .+..+..+.+|.+.|..+.|+|+++
T Consensus       689 ~~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~------~v~vwd~~------~~~~~~~~~~h~~~v~~~~~sp~~~  756 (1249)
T 3sfz_A          689 GKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDF------FLKLWDLN------QKECRNTMFGHTNSVNHCRFSPDDE  756 (1249)
T ss_dssp             CCEEEEEECCSSCEEEEEECSSSSCCEEEEEETTS------CEEEEETT------SSSEEEEECCCSSCEEEEEECSSTT
T ss_pred             CceEEEEcCCCCcEEEEEEecCCCceEEEEEeCCC------eEEEEECC------CcchhheecCCCCCEEEEEEecCCC
Confidence            98887765 4567888899874  333333 3332      23344332      3456677889999999999999999


Q ss_pred             EEEEeeCCCeEEEEECCCCceeeeccc----------------------------------------------------c
Q 021399          160 TIISAGEDAIVRIWDTETGKLLKESDK----------------------------------------------------E  187 (313)
Q Consensus       160 ~i~t~~~d~~i~lwd~~~~~~~~~~~~----------------------------------------------------~  187 (313)
                      .+++++.|+.|++||+.++.....+..                                                    .
T Consensus       757 ~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~d~~~~~~~~~~~  836 (1249)
T 3sfz_A          757 LLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIH  836 (1249)
T ss_dssp             EEEEEESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEETTEEEEEETTTCCEEEEEE
T ss_pred             EEEEEECCCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEcCCcEEEEEecCCCceeEEc
Confidence            999999999999999877654332210                                                    1


Q ss_pred             cCceeceEEEEECCCCCEEEEeeCCCcEEEEECCCCcEEEEEe-cCCceeEEEeccCCCEEEEcccccCceeEeeccCC-
Q 021399          188 TGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYV-TERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRA-  265 (313)
Q Consensus       188 ~~h~~~v~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~-~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~-  265 (313)
                      .+|...+.+++|+|++.++++++.||.|++||++++.++..+. +...+.+++|+|++..+++++.+  +.+.+|+... 
T Consensus       837 ~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~s~s~d--g~v~vw~~~~~  914 (1249)
T 3sfz_A          837 TGHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVADCRGHLSWVHGVMFSPDGSSFLTASDD--QTIRVWETKKV  914 (1249)
T ss_dssp             CSSSSCCCEEEECSSTTEEEEECSSSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETT--SCEEEEEHHHH
T ss_pred             CCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeeecCCCccceEEEEECCCCCEEEEEeCC--CeEEEEEcccc
Confidence            1577889999999999999999999999999999999888875 45679999999999887766543  2344444210 


Q ss_pred             ------------------------------------------------------------------Cceeeeeeehhhhh
Q 021399          266 ------------------------------------------------------------------GKFEAKFFDKILQE  279 (313)
Q Consensus       266 ------------------------------------------------------------------~~~~~~~~~~~~~~  279 (313)
                                                                                        ....+++|+..+++
T Consensus       915 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~g~~~g~i~i~d~~~~~  994 (1249)
T 3sfz_A          915 CKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNR  994 (1249)
T ss_dssp             HSCCSSSEEEEEEEEEETTEEEEEEEESSSSEEEEEESSCCEEEECCSCEEEEEECTTSSEEEEEETTSCCEEEETTTTS
T ss_pred             ceeeeecccceeeEEEcCCCcEEEEecCCcceEEEecCcceEEEcccCcEEEEEEcCCCCEEEEEcCCCCEEEEEcCCCc
Confidence                                                                              11246788888888


Q ss_pred             hhccccccccceeEEEECCCCCeeEEE
Q 021399          280 EIGGVKGHFGPINALAFNPDGKRYGFL  306 (313)
Q Consensus       280 ~~~~~~~h~~~V~~~~fspdgk~~~~~  306 (313)
                      .+..+.+|.+.|++++|+|||+.++..
T Consensus       995 ~~~~~~~h~~~v~~l~~s~dg~~l~s~ 1021 (1249)
T 3sfz_A          995 VFSSGVGHKKAVRHIQFTADGKTLISS 1021 (1249)
T ss_dssp             CEEECCCCSSCCCCEEECSSSSCEEEE
T ss_pred             eeeecccCCCceEEEEECCCCCEEEEE
Confidence            888888999999999999999988764

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=100.00  E-value=1.8e-34  Score=249.34  Aligned_cols=236  Identities=18%  Similarity=0.193  Sum_probs=178.0

Q ss_pred             ccccccceeEEEEccCCCEEEEeeCCCCeEEEeCCCCcEEE----EecCCCCceEEEEECCCCCeEEEeeCCCcEEEEEC
Q 021399            6 MKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLG----TYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNV   81 (313)
Q Consensus         6 l~~h~~~v~~~~fs~~g~~l~s~s~d~~i~iw~~~~~~~~~----~~~~H~~~V~~~~~~~~~~~l~s~s~D~~v~vWd~   81 (313)
                      ..+|...|.+++|+|++. +++++.|+.|+|||+.+++...    ...+|.+.|.+++|+|++++|++|+.|++|++||+
T Consensus        90 ~~~~~~~V~~~~~s~d~~-~l~~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~sgs~dg~v~iwd~  168 (357)
T 4g56_B           90 GVQTEAGVTDVAWVSEKG-ILVASDSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVWDL  168 (357)
T ss_dssp             EEECSSCEEEEEEETTTE-EEEEETTSCEEEC--------CCCCEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEET
T ss_pred             cCCCCCCEEEEEEcCCCC-EEEEECCCEEEEeeccccceeEEEeeccCCCCCCEEEEEECCCCCEEEEEeCCCeEEEEEC
Confidence            457899999999999985 5568889999999998886543    34589999999999999999999999999999999


Q ss_pred             CCCeEEEEec-CCCCeeEEEeecCC--eEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEccCC
Q 021399           82 ETGAQLFTFN-FDSPARSVDFAVGD--KLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLN  158 (313)
Q Consensus        82 ~~~~~~~~~~-~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~  158 (313)
                      ++++.+..+. +...+..+.|++++  .++....+..+      .+|++...    ..........+...+.+++|+|++
T Consensus       169 ~~~~~~~~~~~h~~~v~~v~~s~~~~~~~~s~~~dg~v------~~wd~~~~----~~~~~~~~~~~~~~v~~v~~sp~~  238 (357)
T 4g56_B          169 SQKAVLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRI------LLWDTRKP----KPATRIDFCASDTIPTSVTWHPEK  238 (357)
T ss_dssp             TTTEEEEEECCCSSCEEEEEECTTCSSCEEEEETTSCE------EECCTTSS----SCBCBCCCTTCCSCEEEEEECTTS
T ss_pred             CCCcEEEEEcCCCCCEEEEEEccCCCceeeeeccCCce------EEEECCCC----ceeeeeeeccccccccchhhhhcc
Confidence            9999887775 45678888998754  34444444433      33332111    011112233456778999999974


Q ss_pred             -CEEEEeeCCCeEEEEECCCCceeeecccccCceeceEEEEECCCC-CEEEEeeCCCcEEEEECCCCcEEEEEecCCcee
Q 021399          159 -RTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADG-SHFLTGSLDKSAKLWDARTLELIKTYVTERPVN  236 (313)
Q Consensus       159 -~~i~t~~~d~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~-~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~  236 (313)
                       .++++|+.|+.|++||++++++++.+.   +|...|++++|+|++ .+|++|+.|++|++||+++++++..+.+...|.
T Consensus       239 ~~~la~g~~d~~i~~wd~~~~~~~~~~~---~~~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~~~~~~~~H~~~V~  315 (357)
T 4g56_B          239 DDTFACGDETGNVSLVNIKNPDSAQTSA---VHSQNITGLAYSYHSSPFLASISEDCTVAVLDADFSEVFRDLSHRDFVT  315 (357)
T ss_dssp             TTEEEEEESSSCEEEEESSCGGGCEEEC---CCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTSCEEEEECCCSSCEE
T ss_pred             cceEEEeecccceeEEECCCCcEeEEEe---ccceeEEEEEEcCCCCCEEEEEeCCCEEEEEECCCCcEeEECCCCCCEE
Confidence             678899999999999999888776553   688999999999987 579999999999999999999988887788999


Q ss_pred             EEEeccCCCEEEEcccccC
Q 021399          237 AVTMSPLLDHVVLGGGQDA  255 (313)
Q Consensus       237 ~~~~~p~~~~~~~~~~~~~  255 (313)
                      +++|+|....++++++.|+
T Consensus       316 ~vafsP~d~~~l~s~s~Dg  334 (357)
T 4g56_B          316 GVAWSPLDHSKFTTVGWDH  334 (357)
T ss_dssp             EEEECSSSTTEEEEEETTS
T ss_pred             EEEEeCCCCCEEEEEcCCC
Confidence            9999995443444445443

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=100.00  E-value=3.4e-34  Score=272.52  Aligned_cols=274  Identities=15%  Similarity=0.205  Sum_probs=227.1

Q ss_pred             ccccccccceeEEEEccCCCEEEEeeCCCCeEEEeCCCCcEEEEecCCCCceEEEEECCCCCeEEEeeCCCcEEEEECCC
Q 021399            4 ILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVET   83 (313)
Q Consensus         4 ~~l~~h~~~v~~~~fs~~g~~l~s~s~d~~i~iw~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~v~vWd~~~   83 (313)
                      ..+.+|.+.|.+++|+|+|++|++++.||.|+|||..+++.+.++.+|.+.|.+++|+|++++|++++.||.|++||+.+
T Consensus         7 ~~~~~h~~~v~~i~~sp~~~~la~~~~~g~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~   86 (814)
T 3mkq_A            7 KTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNT   86 (814)
T ss_dssp             EEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTT
T ss_pred             eeeecCCCceEEEEECCCCCEEEEEeCCCEEEEEECCCCceEEEEecCCCcEEEEEEeCCCCEEEEEeCCCeEEEEECCC
Confidence            47889999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CeEEEEec-CCCCeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEcc-CCCEE
Q 021399           84 GAQLFTFN-FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGP-LNRTI  161 (313)
Q Consensus        84 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~i  161 (313)
                      ++.+..+. +...+..+.|++++..++....     ++.+.++++..     .......+.+|...+.++.|+| ++..+
T Consensus        87 ~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-----dg~i~vw~~~~-----~~~~~~~~~~~~~~v~~~~~~p~~~~~l  156 (814)
T 3mkq_A           87 GEKVVDFEAHPDYIRSIAVHPTKPYVLSGSD-----DLTVKLWNWEN-----NWALEQTFEGHEHFVMCVAFNPKDPSTF  156 (814)
T ss_dssp             CCEEEEEECCSSCEEEEEECSSSSEEEEEET-----TSEEEEEEGGG-----TSEEEEEEECCSSCEEEEEEETTEEEEE
T ss_pred             CcEEEEEecCCCCEEEEEEeCCCCEEEEEcC-----CCEEEEEECCC-----CceEEEEEcCCCCcEEEEEEEcCCCCEE
Confidence            98887765 5678899999987765444322     22233443321     1245567788999999999999 78899


Q ss_pred             EEeeCCCeEEEEECCCCceeeecccccCceeceEEEEECC--CCCEEEEeeCCCcEEEEECCCCcEEEEEe-cCCceeEE
Q 021399          162 ISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAA--DGSHFLTGSLDKSAKLWDARTLELIKTYV-TERPVNAV  238 (313)
Q Consensus       162 ~t~~~d~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~--~~~~l~s~s~dg~i~iwd~~~~~~~~~~~-~~~~~~~~  238 (313)
                      ++++.|+.|++||+.++.......  ..+...+.+++|+|  ++.+|++++.||.|++||+++++++..+. +...+.++
T Consensus       157 ~~~~~dg~v~vwd~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~v~~~  234 (814)
T 3mkq_A          157 ASGCLDRTVKVWSLGQSTPNFTLT--TGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFA  234 (814)
T ss_dssp             EEEETTSEEEEEETTCSSCSEEEE--CCCTTCCCEEEECCSTTCCEEEEECTTSEEEEEETTTTEEEEEEECCSSCEEEE
T ss_pred             EEEeCCCeEEEEECCCCcceeEEe--cCCCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEEcCCCCCEEEE
Confidence            999999999999998776554433  23457899999999  99999999999999999999999988886 46689999


Q ss_pred             EeccCCCEEEEcccccCceeEeeccCCCceeeeeeehhhhhhhccccccccceeEEEECCCCCee
Q 021399          239 TMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKRY  303 (313)
Q Consensus       239 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~fspdgk~~  303 (313)
                      +|+|+++.+++++. ++             .+++||..+++.+..+..|..+|++++|+|+|+.+
T Consensus       235 ~~~~~~~~l~~~~~-dg-------------~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  285 (814)
T 3mkq_A          235 VFHPTLPIIISGSE-DG-------------TLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKN  285 (814)
T ss_dssp             EECSSSSEEEEEET-TS-------------CEEEEETTTCSEEEEECCSSSSEEEEEECTTCGGG
T ss_pred             EEcCCCCEEEEEeC-CC-------------eEEEEECCCCcEEEEeecCCCcEEEEEEccCCCce
Confidence            99999997766543 22             24566666666667778889999999999999853

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=100.00  E-value=2.1e-33  Score=241.07  Aligned_cols=233  Identities=21%  Similarity=0.307  Sum_probs=194.9

Q ss_pred             cccccccceeEEEEccCCCEEEEeeCCCCeEEEeCCCC----cEEEEecCCCCceEEEEECCCCCeEEEeeCCCcEEEEE
Q 021399            5 LMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNG----ERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWN   80 (313)
Q Consensus         5 ~l~~h~~~v~~~~fs~~g~~l~s~s~d~~i~iw~~~~~----~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~v~vWd   80 (313)
                      .+..|...|.+++|+|+|++|++|+.|+.+++|++.+.    +....+.+|.+.|.++.|+++++ +++++.|++|++||
T Consensus        92 ~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-l~s~s~d~~i~~wd  170 (340)
T 1got_B           92 AIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQ-IVTSSGDTTCALWD  170 (340)
T ss_dssp             EEECSSSCEEEEEECTTSSEEEEEETTCEEEEEETTTCSBSCEEEEEEECCSSCEEEEEEEETTE-EEEEETTSCEEEEE
T ss_pred             EeecCCccEEEEEECCCCCEEEEEeCCCeEEEEECccCCCcceeEEEecCCCccEEEEEECCCCc-EEEEECCCcEEEEE
Confidence            56789999999999999999999999999999999875    35677899999999999998775 88999999999999


Q ss_pred             CCCCeEEEEec-CCCCeeEEEeecCCeEEEEE-CCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEccCC
Q 021399           81 VETGAQLFTFN-FDSPARSVDFAVGDKLAVIT-TDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLN  158 (313)
Q Consensus        81 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~  158 (313)
                      +.+++.+..+. +...+..+.|.|++..++.. .+.      .+.+|++.      .+.....+.+|...|.+++|+|++
T Consensus       171 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sg~~d~------~v~~wd~~------~~~~~~~~~~h~~~v~~v~~~p~~  238 (340)
T 1got_B          171 IETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDA------SAKLWDVR------EGMCRQTFTGHESDINAICFFPNG  238 (340)
T ss_dssp             TTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTS------CEEEEETT------TCSEEEEECCCSSCEEEEEECTTS
T ss_pred             CCCCcEEEEEcCCCCceEEEEECCCCCEEEEEeCCC------cEEEEECC------CCeeEEEEcCCcCCEEEEEEcCCC
Confidence            99998887765 45678899999877655443 333      33444332      244667788999999999999999


Q ss_pred             CEEEEeeCCCeEEEEECCCCceeeecccccCceeceEEEEECCCCCEEEEeeCCCcEEEEECCCCcEEEEEe-cCCceeE
Q 021399          159 RTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYV-TERPVNA  237 (313)
Q Consensus       159 ~~i~t~~~d~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~-~~~~~~~  237 (313)
                      ++|++|+.|+.|++||+++++.+..+. ...+...|.+++|+|+|.+|++|+.|+.|++||+.+++++..+. +...+.+
T Consensus       239 ~~l~s~s~d~~v~iwd~~~~~~~~~~~-~~~~~~~v~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~~~~h~~~v~~  317 (340)
T 1got_B          239 NAFATGSDDATCRLFDLRADQELMTYS-HDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSC  317 (340)
T ss_dssp             SEEEEEETTSCEEEEETTTTEEEEEEC-CTTCCSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEE
T ss_pred             CEEEEEcCCCcEEEEECCCCcEEEEEc-cCCcccceEEEEECCCCCEEEEECCCCeEEEEEcccCcEeeEeecCCCcEEE
Confidence            999999999999999999887665543 22345579999999999999999999999999999999888876 4678999


Q ss_pred             EEeccCCCEEEEcc
Q 021399          238 VTMSPLLDHVVLGG  251 (313)
Q Consensus       238 ~~~~p~~~~~~~~~  251 (313)
                      ++|+|++..+++++
T Consensus       318 ~~~s~dg~~l~s~s  331 (340)
T 1got_B          318 LGVTDDGMAVATGS  331 (340)
T ss_dssp             EEECTTSSCEEEEE
T ss_pred             EEEcCCCCEEEEEc
Confidence            99999998877654

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.6e-34  Score=249.14  Aligned_cols=244  Identities=17%  Similarity=0.247  Sum_probs=189.9

Q ss_pred             ccccccccceeEEEEccCCCEEEEeeCCCCeEEEeCC--CCcEEEEecCCCCceEEEEECCC--CCeEEEeeCCCcEEEE
Q 021399            4 ILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFAD--NGERLGTYRGHNGAVWCCDVSRD--SMTLITGSADQTAKLW   79 (313)
Q Consensus         4 ~~l~~h~~~v~~~~fs~~g~~l~s~s~d~~i~iw~~~--~~~~~~~~~~H~~~V~~~~~~~~--~~~l~s~s~D~~v~vW   79 (313)
                      .++.+|.+.|.+++|+|++++|++|+.|+.|+|||+.  +.+.+..+.+|.+.|++++|+++  +++|++|+.|++|++|
T Consensus         5 ~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~v~iw   84 (379)
T 3jrp_A            5 VIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIW   84 (379)
T ss_dssp             CCEEECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSCEEEE
T ss_pred             EEecCCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCcceeeeEecCCCCcEEEEEeCCCCCCCEEEEeccCCEEEEE
Confidence            5789999999999999999999999999999999998  55678889999999999999977  8999999999999999


Q ss_pred             ECCCCeEEEEecCCCCeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEccC--
Q 021399           80 NVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPL--  157 (313)
Q Consensus        80 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--  157 (313)
                      |+.+++..                                                  .+..+..|...|.++.|+|+  
T Consensus        85 d~~~~~~~--------------------------------------------------~~~~~~~~~~~v~~~~~~~~~~  114 (379)
T 3jrp_A           85 KEENGRWS--------------------------------------------------QIAVHAVHSASVNSVQWAPHEY  114 (379)
T ss_dssp             EEETTEEE--------------------------------------------------EEEEECCCSSCEEEEEECCGGG
T ss_pred             EcCCCcee--------------------------------------------------EeeeecCCCcceEEEEeCCCCC
Confidence            98775421                                                  11223456778999999999  


Q ss_pred             CCEEEEeeCCCeEEEEECCCCceeeecccccCceeceEEEEECC-------------CCCEEEEeeCCCcEEEEECCCCc
Q 021399          158 NRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAA-------------DGSHFLTGSLDKSAKLWDARTLE  224 (313)
Q Consensus       158 ~~~i~t~~~d~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~-------------~~~~l~s~s~dg~i~iwd~~~~~  224 (313)
                      +.++++++.|+.|++||+......... ...+|...|.+++|+|             ++.+|++++.|+.|++||++++.
T Consensus       115 ~~~l~~~~~d~~i~v~d~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~  193 (379)
T 3jrp_A          115 GPLLLVASSDGKVSVVEFKENGTTSPI-IIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDA  193 (379)
T ss_dssp             CSEEEEEETTSEEEEEECCTTSCCCEE-EEECCTTCEEEEEECCCC----------CTTCEEEEEETTSCEEEEEEETTT
T ss_pred             CCEEEEecCCCcEEEEecCCCCceeeE-EecCCCCceEEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCC
Confidence            899999999999999999876433222 1236888999999999             69999999999999999998765


Q ss_pred             E----EEEEe-cCCceeEEEeccCC--CEEEEcccccCceeEeeccCCCceeeeeeehhhhhhhccccccccceeEEEEC
Q 021399          225 L----IKTYV-TERPVNAVTMSPLL--DHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFN  297 (313)
Q Consensus       225 ~----~~~~~-~~~~~~~~~~~p~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~fs  297 (313)
                      .    +..+. +...+.+++|+|++  ...+++++.|+ .+.+||.+.+....       ...+.....|...|++++|+
T Consensus       194 ~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~dg-~i~iwd~~~~~~~~-------~~~~~~~~~~~~~v~~~~~s  265 (379)
T 3jrp_A          194 QTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDR-TCIIWTQDNEQGPW-------KKTLLKEEKFPDVLWRASWS  265 (379)
T ss_dssp             TEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTS-CEEEEEESSTTSCC-------EEEESSSSCCSSCEEEEEEC
T ss_pred             cceeeEEEEecccCcEeEEEECCCCCCCCeEEEEeCCC-EEEEEeCCCCCccc-------eeeeeccccCCCcEEEEEEc
Confidence            3    33333 45679999999994  34444444433 34444443322110       11222344589999999999


Q ss_pred             CCCCeeEEE
Q 021399          298 PDGKRYGFL  306 (313)
Q Consensus       298 pdgk~~~~~  306 (313)
                      |||+.++..
T Consensus       266 ~~g~~l~~~  274 (379)
T 3jrp_A          266 LSGNVLALS  274 (379)
T ss_dssp             SSSCCEEEE
T ss_pred             CCCCEEEEe
Confidence            999988765

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=100.00  E-value=2.8e-33  Score=245.07  Aligned_cols=221  Identities=20%  Similarity=0.335  Sum_probs=178.2

Q ss_pred             cceeEEEEccCCCEEEEeeCCCCeEEEeCCCCcEEEEecCCCCceEEEEECCCCCeEEEeeCCCcEEEEECCCCeEEEEe
Q 021399           11 RPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTF   90 (313)
Q Consensus        11 ~~v~~~~fs~~g~~l~s~s~d~~i~iw~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~v~vWd~~~~~~~~~~   90 (313)
                      ..|.+++|+|+|++|++|+.|+.|+|||+.+++.+..+.+|...|.+++|+|+++.|++++.|++|++||+++++....+
T Consensus       124 ~~v~~v~~s~dg~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~  203 (393)
T 1erj_A          124 LYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTL  203 (393)
T ss_dssp             CBEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEE
T ss_pred             eeEEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEccCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCCCeeEEEE
Confidence            35899999999999999999999999999999999999999999999999999999999999999999999999988877


Q ss_pred             cCCCCeeEEEeec-CCeE-EEEECCCceeccccceeeeeeeCCCCCCCceEEE-------ecCCCCceEEEEEccCCCEE
Q 021399           91 NFDSPARSVDFAV-GDKL-AVITTDPFMELNSAIHVKRIARDPADQGGESVLI-------LKGPQGRINRAVWGPLNRTI  161 (313)
Q Consensus        91 ~~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~i~~~~~~~~~~~i  161 (313)
                      .....+..+.+.+ ++.. +.+..+...      +++++.      .+..+..       ..+|...|.++.|+|+++++
T Consensus       204 ~~~~~v~~~~~~~~~~~~l~~~s~d~~v------~iwd~~------~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l  271 (393)
T 1erj_A          204 SIEDGVTTVAVSPGDGKYIAAGSLDRAV------RVWDSE------TGFLVERLDSENESGTGHKDSVYSVVFTRDGQSV  271 (393)
T ss_dssp             ECSSCEEEEEECSTTCCEEEEEETTSCE------EEEETT------TCCEEEEEC------CCCSSCEEEEEECTTSSEE
T ss_pred             EcCCCcEEEEEECCCCCEEEEEcCCCcE------EEEECC------CCcEEEeecccccCCCCCCCCEEEEEECCCCCEE
Confidence            7777888888987 4444 444444332      333221      1112222       25788999999999999999


Q ss_pred             EEeeCCCeEEEEECCCCceeee---------cccccCceeceEEEEECCCCCEEEEeeCCCcEEEEECCCCcEEEEEe-c
Q 021399          162 ISAGEDAIVRIWDTETGKLLKE---------SDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYV-T  231 (313)
Q Consensus       162 ~t~~~d~~i~lwd~~~~~~~~~---------~~~~~~h~~~v~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~-~  231 (313)
                      ++|+.|+.|++||+.+......         .....+|...|.++++++++.+|++|+.|+.|++||+++++++..+. +
T Consensus       272 ~s~s~d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~~~~~~l~~h  351 (393)
T 1erj_A          272 VSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGH  351 (393)
T ss_dssp             EEEETTSEEEEEEC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEEECC
T ss_pred             EEEeCCCEEEEEECCCCCCcccccCCCCCcceEEEecccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEECCC
Confidence            9999999999999875432110         01123688899999999999999999999999999999999988876 4


Q ss_pred             CCceeEEEeccC
Q 021399          232 ERPVNAVTMSPL  243 (313)
Q Consensus       232 ~~~~~~~~~~p~  243 (313)
                      ...+.+++|+|.
T Consensus       352 ~~~v~~v~~~~~  363 (393)
T 1erj_A          352 RNSVISVAVANG  363 (393)
T ss_dssp             SSCEEEEEECSS
T ss_pred             CCCEEEEEecCC
Confidence            567999998873

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=100.00  E-value=5.2e-34  Score=245.43  Aligned_cols=239  Identities=19%  Similarity=0.283  Sum_probs=183.5

Q ss_pred             cccccccceeEEEEccCCCEEEEeeCCCCeEEEeCCCCc--EEEEecCCCCceEEEEECCCCCeEEEeeCCCcEEEEECC
Q 021399            5 LMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGE--RLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVE   82 (313)
Q Consensus         5 ~l~~h~~~v~~~~fs~~g~~l~s~s~d~~i~iw~~~~~~--~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~v~vWd~~   82 (313)
                      ...+|.+.|.+++|+|+|++|++|+.|+.++||+..++.  .+.++++|.+.|.+++|+|++++|++|+.|++|++||+.
T Consensus        56 ~~~~h~~~v~~~~~sp~g~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~  135 (345)
T 3fm0_A           56 LSEGHQRTVRKVAWSPCGNYLASASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVD  135 (345)
T ss_dssp             ECSSCSSCEEEEEECTTSSEEEEEETTSCEEEEEECCC-EEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEEC
T ss_pred             eccccCCcEEEEEECCCCCEEEEEECCCcEEEEEccCCCeEEEEEccCCCCCceEEEEeCCCCEEEEEECCCeEEEEECC
Confidence            347899999999999999999999999999999988764  578899999999999999999999999999999999997


Q ss_pred             CCeE---EEEec-CCCCeeEEEeecCCeEEEE-ECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEccC
Q 021399           83 TGAQ---LFTFN-FDSPARSVDFAVGDKLAVI-TTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPL  157 (313)
Q Consensus        83 ~~~~---~~~~~-~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~  157 (313)
                      ++..   +..+. +...+..+.|+|++..++. ..+..      +.+++....    .......+.+|.+.|.+++|+|+
T Consensus       136 ~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~------i~~w~~~~~----~~~~~~~~~~h~~~v~~l~~sp~  205 (345)
T 3fm0_A          136 EEDEYECVSVLNSHTQDVKHVVWHPSQELLASASYDDT------VKLYREEED----DWVCCATLEGHESTVWSLAFDPS  205 (345)
T ss_dssp             TTSCEEEEEEECCCCSCEEEEEECSSSSCEEEEETTSC------EEEEEEETT----EEEEEEEECCCSSCEEEEEECTT
T ss_pred             CCCCeEEEEEecCcCCCeEEEEECCCCCEEEEEeCCCc------EEEEEecCC----CEEEEEEecCCCCceEEEEECCC
Confidence            7532   33332 4567888999987654443 33332      333433211    11234567899999999999999


Q ss_pred             CCEEEEeeCCCeEEEEECCCCc---------------eeeecccccCceeceEEEEECCCCCEEEEeeCCCcEEEEECCC
Q 021399          158 NRTIISAGEDAIVRIWDTETGK---------------LLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDART  222 (313)
Q Consensus       158 ~~~i~t~~~d~~i~lwd~~~~~---------------~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~dg~i~iwd~~~  222 (313)
                      +++|++++.|++|++||.....               ++..+.  ..|...|.+++|+|++..|++++.|+.|++|+.++
T Consensus       206 g~~l~s~s~D~~v~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~h~~~v~~v~~~~~~~~l~s~~~d~~i~vw~~~~  283 (345)
T 3fm0_A          206 GQRLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKCICTLS--GFHSRTIYDIAWCQLTGALATACGDDAIRVFQEDP  283 (345)
T ss_dssp             SSEEEEEETTSCEEEEEEECTTCTTCCCCC---CEEEEEEEEC--SSCSSCEEEEEECTTTCCEEEEETTSCEEEEEECT
T ss_pred             CCEEEEEeCCCeEEEeccccCCCCccceeeccCCccceeEEec--CCCCCcEEEEEEecCCCEEEEEeCCCeEEEEEeCC
Confidence            9999999999999999963221               111111  13788999999999999999999999999999875


Q ss_pred             Cc----E----EEEE--ecCCceeEEEeccCCCEEEEcccccC
Q 021399          223 LE----L----IKTY--VTERPVNAVTMSPLLDHVVLGGGQDA  255 (313)
Q Consensus       223 ~~----~----~~~~--~~~~~~~~~~~~p~~~~~~~~~~~~~  255 (313)
                      ..    +    ....  .+...+++++|+|++..++++++.|+
T Consensus       284 ~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~laS~s~Dg  326 (345)
T 3fm0_A          284 NSDPQQPTFSLTAHLHQAHSQDVNCVAWNPKEPGLLASCSDDG  326 (345)
T ss_dssp             TSCTTSCCEEEEEEETTSSSSCEEEEEECSSSTTEEEEEETTS
T ss_pred             CCCcceeeEEEEeeecccccCcEeEeEEeCCCceEEEEcCCCC
Confidence            42    1    1111  24567999999999876666666554

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=100.00  E-value=2.8e-33  Score=245.58  Aligned_cols=276  Identities=18%  Similarity=0.228  Sum_probs=216.4

Q ss_pred             ccccccceeEEEEccCCCEEEEeeCCCCeEEEeCCCCcEEEEecC-CCCceEEEEECCCCCeEEEeeCCCcEEEEECCCC
Q 021399            6 MKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRG-HNGAVWCCDVSRDSMTLITGSADQTAKLWNVETG   84 (313)
Q Consensus         6 l~~h~~~v~~~~fs~~g~~l~s~s~d~~i~iw~~~~~~~~~~~~~-H~~~V~~~~~~~~~~~l~s~s~D~~v~vWd~~~~   84 (313)
                      ..+|...+.+..+++++..+++++.|+.|++||..+++....+.. |...|.+++|+|++++|++|+.||.|++||+.++
T Consensus        87 ~~~~~~~~~~~~~~~s~~~l~~~~~d~~v~lw~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~  166 (401)
T 4aez_A           87 APGIIDDYYLNLLDWSNLNVVAVALERNVYVWNADSGSVSALAETDESTYVASVKWSHDGSFLSVGLGNGLVDIYDVESQ  166 (401)
T ss_dssp             CTTCCCCTTCBCEEECTTSEEEEEETTEEEEEETTTCCEEEEEECCTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTC
T ss_pred             CCCCcCCceEEEEeecCCCEEEEECCCeEEEeeCCCCcEeEeeecCCCCCEEEEEECCCCCEEEEECCCCeEEEEECcCC
Confidence            346766655544444456788999999999999999998887776 8999999999999999999999999999999998


Q ss_pred             eEEEEec-CCCCeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEccCCCEEEE
Q 021399           85 AQLFTFN-FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIIS  163 (313)
Q Consensus        85 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~t  163 (313)
                      +.+..+. +...+..+.|. +..++.+..+..      +.++++.     .....+..+.+|.+.|.++.|+|+++++++
T Consensus       167 ~~~~~~~~~~~~v~~~~~~-~~~l~~~~~dg~------i~i~d~~-----~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s  234 (401)
T 4aez_A          167 TKLRTMAGHQARVGCLSWN-RHVLSSGSRSGA------IHHHDVR-----IANHQIGTLQGHSSEVCGLAWRSDGLQLAS  234 (401)
T ss_dssp             CEEEEECCCSSCEEEEEEE-TTEEEEEETTSE------EEEEETT-----SSSCEEEEEECCSSCEEEEEECTTSSEEEE
T ss_pred             eEEEEecCCCCceEEEEEC-CCEEEEEcCCCC------EEEEecc-----cCcceeeEEcCCCCCeeEEEEcCCCCEEEE
Confidence            8877664 45677778773 445555544432      2333321     123456677889999999999999999999


Q ss_pred             eeCCCeEEEEECCCCceeeecccccCceeceEEEEECCCCC-EEEEee--CCCcEEEEECCCCcEEEEEecCCceeEEEe
Q 021399          164 AGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGS-HFLTGS--LDKSAKLWDARTLELIKTYVTERPVNAVTM  240 (313)
Q Consensus       164 ~~~d~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~-~l~s~s--~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~  240 (313)
                      ++.|+.|++||+.+++.+..+.   .|...|.+++|+|++. .+++++  .|+.|++||+++++++..+.....+.+++|
T Consensus       235 ~~~d~~v~iwd~~~~~~~~~~~---~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~~~~~~~~~~v~~~~~  311 (401)
T 4aez_A          235 GGNDNVVQIWDARSSIPKFTKT---NHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARVNTVDAGSQVTSLIW  311 (401)
T ss_dssp             EETTSCEEEEETTCSSEEEEEC---CCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTCCEEEEEECSSCEEEEEE
T ss_pred             EeCCCeEEEccCCCCCccEEec---CCcceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCCCEEEEEeCCCcEEEEEE
Confidence            9999999999999887766543   5888999999999765 555654  799999999999999999988889999999


Q ss_pred             ccCCCEEEEcccccCceeEeeccCCCceeeeeeehhhhhhhccccccccceeEEEECCCCCeeEEE
Q 021399          241 SPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKRYGFL  306 (313)
Q Consensus       241 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~fspdgk~~~~~  306 (313)
                      +|++..+++++|..++.+.+||.+.+..          .....+.+|.++|++++|+|||+.++..
T Consensus       312 s~~~~~l~~~~g~~dg~i~v~~~~~~~~----------~~~~~~~~h~~~v~~~~~s~dg~~l~s~  367 (401)
T 4aez_A          312 SPHSKEIMSTHGFPDNNLSIWSYSSSGL----------TKQVDIPAHDTRVLYSALSPDGRILSTA  367 (401)
T ss_dssp             CSSSSEEEEEECTTTCEEEEEEEETTEE----------EEEEEEECCSSCCCEEEECTTSSEEEEE
T ss_pred             CCCCCeEEEEeecCCCcEEEEecCCccc----------eeEEEecCCCCCEEEEEECCCCCEEEEE
Confidence            9999999887665555555555433222          1222356899999999999999988764

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=100.00  E-value=3.4e-34  Score=254.27  Aligned_cols=282  Identities=14%  Similarity=0.145  Sum_probs=204.3

Q ss_pred             ccccceeEEEEccCCCEEEEeeCCCCeEEEeCCCCc-----------EEEEecCCC------------CceEEEEECCCC
Q 021399            8 GHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGE-----------RLGTYRGHN------------GAVWCCDVSRDS   64 (313)
Q Consensus         8 ~h~~~v~~~~fs~~g~~l~s~s~d~~i~iw~~~~~~-----------~~~~~~~H~------------~~V~~~~~~~~~   64 (313)
                      .|.+.|.+++|+|+|++|++|+.||.|+||++.+++           ....+.+|.            +.|.+++|+|++
T Consensus        26 ~~~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~  105 (447)
T 3dw8_B           26 AEADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQK  105 (447)
T ss_dssp             CGGGSEEEEEECSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCCC
T ss_pred             cccCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcCCC
Confidence            467899999999999999999999999999999877           578899998            889999999998


Q ss_pred             --CeEEEeeCCCcEEEEECCCCeEEE---------------------------------------E--ecCCCCeeEEEe
Q 021399           65 --MTLITGSADQTAKLWNVETGAQLF---------------------------------------T--FNFDSPARSVDF  101 (313)
Q Consensus        65 --~~l~s~s~D~~v~vWd~~~~~~~~---------------------------------------~--~~~~~~~~~~~~  101 (313)
                        ..|++++.|++|++||+.+++...                                       .  ..+...+.++.|
T Consensus       106 ~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~  185 (447)
T 3dw8_B          106 NAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSISI  185 (447)
T ss_dssp             SSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEEE
T ss_pred             CcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEEEE
Confidence              789999999999999987644321                                       1  124567888999


Q ss_pred             ecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEE-------EecCCCCceEEEEEccCC-CEEEEeeCCCeEEEE
Q 021399          102 AVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVL-------ILKGPQGRINRAVWGPLN-RTIISAGEDAIVRIW  173 (313)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~i~~~~~~~~~-~~i~t~~~d~~i~lw  173 (313)
                      ++++..++...+..      +.+|++..     ......       .+.+|...|.++.|+|++ +.+++|+.|+.|++|
T Consensus       186 ~~~~~~l~s~~d~~------i~iwd~~~-----~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iw  254 (447)
T 3dw8_B          186 NSDYETYLSADDLR------INLWHLEI-----TDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLC  254 (447)
T ss_dssp             CTTSSEEEEECSSE------EEEEETTE-----EEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEE
T ss_pred             cCCCCEEEEeCCCe------EEEEECCC-----CCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEEEE
Confidence            98776666544433      33333221     011111       245788999999999998 999999999999999


Q ss_pred             ECCCCce----eeecccccCcee------------ceEEEEECCCCCEEEEeeCCCcEEEEECCC-CcEEEEEecCCc--
Q 021399          174 DTETGKL----LKESDKETGHKK------------TITSLAKAADGSHFLTGSLDKSAKLWDART-LELIKTYVTERP--  234 (313)
Q Consensus       174 d~~~~~~----~~~~~~~~~h~~------------~v~~~~~s~~~~~l~s~s~dg~i~iwd~~~-~~~~~~~~~~~~--  234 (313)
                      |+++++.    +..+.   +|..            .|.+++|+|++.+|++++. +.|++||+++ ++++..+.....  
T Consensus       255 d~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~  330 (447)
T 3dw8_B          255 DMRASALCDRHSKLFE---EPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVWDLNMENRPVETYQVHEYLR  330 (447)
T ss_dssp             ETTTCSSSCTTCEEEC---CC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEEETTCCSSCSCCEESCGGGT
T ss_pred             ECcCCccccceeeEec---cCCCccccccccccCceEEEEEECCCCCEEEEeeC-CeEEEEeCCCCccccceeecccccc
Confidence            9988775    33332   3444            8999999999999999999 9999999997 777777754432  


Q ss_pred             --------------eeEEEeccCCCEEEEcccccCceeEeeccCCCceeeeeeehhhhh--------------------h
Q 021399          235 --------------VNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQE--------------------E  280 (313)
Q Consensus       235 --------------~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------~  280 (313)
                                    +..++|+|++..+++++ . ++.+.+||...+......-.....+                    .
T Consensus       331 ~~l~~~~~~~~i~~~~~~~~s~~~~~l~s~s-~-dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  408 (447)
T 3dw8_B          331 SKLCSLYENDCIFDKFECCWNGSDSVVMTGS-Y-NNFFRMFDRNTKRDITLEASRENNKPRTVLKPRKVCASGKRKKDEI  408 (447)
T ss_dssp             TTHHHHHHTSGGGCCCCEEECTTSSEEEEEC-S-TTEEEEEETTTCCEEEEECCSTTCCTTCBCCCCCEECSSCCCTTCE
T ss_pred             ccccccccccccccceEEEECCCCCEEEEec-c-CCEEEEEEcCCCcceeeeecccccccccccCCccccccCCcccccc
Confidence                          22399999999876543 3 3456777766554321000000000                    0


Q ss_pred             hccccccccceeEEEECCCCCeeEEE
Q 021399          281 IGGVKGHFGPINALAFNPDGKRYGFL  306 (313)
Q Consensus       281 ~~~~~~h~~~V~~~~fspdgk~~~~~  306 (313)
                      ......+...|..++|+|+|+.+|..
T Consensus       409 ~~~~~~~~~~i~~~~~~p~~~~la~~  434 (447)
T 3dw8_B          409 SVDSLDFNKKILHTAWHPKENIIAVA  434 (447)
T ss_dssp             EGGGCCTTSCCCEEEECSSSSEEEEE
T ss_pred             cccccccCCceeEEEECCCCCEEEEE
Confidence            00011356789999999999999864

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=100.00  E-value=1.5e-33  Score=242.26  Aligned_cols=229  Identities=18%  Similarity=0.248  Sum_probs=178.9

Q ss_pred             cccccccceeEEEEccCCCEEEEeeCCCCeEEEeCCCCcEEEEecCCCCceEEEEECCCCCeEEEeeCCCcEEEEECCCC
Q 021399            5 LMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETG   84 (313)
Q Consensus         5 ~l~~h~~~v~~~~fs~~g~~l~s~s~d~~i~iw~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~v~vWd~~~~   84 (313)
                      .+.+|...|.+++|+|++.+|++|+.|++|++||+.+++.+.++.+|.+.|.+++|+|+++.+++++.|++|++||+...
T Consensus        71 ~l~~h~~~V~~~~~~~~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~~~  150 (343)
T 2xzm_R           71 ALTGHNHFVSDLALSQENCFAISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILGE  150 (343)
T ss_dssp             EECCCSSCEEEEEECSSTTEEEEEETTSEEEEEETTSSCEEEEEECCCSCEEEEEECSSTTEEEEEETTSCEEEEESSSC
T ss_pred             hhccCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcEEEEEECCCCCEEEEEcCCCEEEEEeccCC
Confidence            57899999999999999999999999999999999999999999999999999999999999999999999999999844


Q ss_pred             eEEEEe---cCCCCeeEEEeecCC-----------eEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceE
Q 021399           85 AQLFTF---NFDSPARSVDFAVGD-----------KLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRIN  150 (313)
Q Consensus        85 ~~~~~~---~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  150 (313)
                      ......   .+...+.++.|.|..           .++.+..+..      +.+|+       ........+.+|.+.|.
T Consensus       151 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~------i~iwd-------~~~~~~~~~~~h~~~v~  217 (343)
T 2xzm_R          151 CKFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGR------LKVWN-------TNFQIRYTFKAHESNVN  217 (343)
T ss_dssp             EEEECCTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSE------EEEEE-------TTTEEEEEEECCSSCEE
T ss_pred             ceeeeecccCCCceeeeeeeccccccccccCCCCCEEEEEcCCCE------EEEEc-------CCCceeEEEcCccccce
Confidence            332222   234467788888753           3444433332      33333       12345567788999999


Q ss_pred             EEEEccCCCEEEEeeCCCeEEEEECCC-CceeeecccccCceeceEEEEECCCCCEEEEeeCCCcEEEEECCCCcEEE--
Q 021399          151 RAVWGPLNRTIISAGEDAIVRIWDTET-GKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIK--  227 (313)
Q Consensus       151 ~~~~~~~~~~i~t~~~d~~i~lwd~~~-~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~--  227 (313)
                      +++|+|++++|++|+.|+.|++||+.. ......+    .+...|.+++|+|++.+++ ++.|+.|++||+.+++...  
T Consensus       218 ~~~~s~~g~~l~sgs~dg~v~iwd~~~~~~~~~~~----~~~~~v~~v~~sp~~~~la-~~~d~~v~iw~~~~~~~~~~~  292 (343)
T 2xzm_R          218 HLSISPNGKYIATGGKDKKLLIWDILNLTYPQREF----DAGSTINQIAFNPKLQWVA-VGTDQGVKIFNLMTQSKAPVC  292 (343)
T ss_dssp             EEEECTTSSEEEEEETTCEEEEEESSCCSSCSEEE----ECSSCEEEEEECSSSCEEE-EEESSCEEEEESSSCCSCSEE
T ss_pred             EEEECCCCCEEEEEcCCCeEEEEECCCCcccceee----cCCCcEEEEEECCCCCEEE-EECCCCEEEEEeCCCCCCceE
Confidence            999999999999999999999999843 3332222    1345699999999998765 5568889999998866433  


Q ss_pred             EEe------------cCCceeEEEeccCCCEEEEcc
Q 021399          228 TYV------------TERPVNAVTMSPLLDHVVLGG  251 (313)
Q Consensus       228 ~~~------------~~~~~~~~~~~p~~~~~~~~~  251 (313)
                      .+.            +...+.+++|+|++..+++++
T Consensus       293 ~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~  328 (343)
T 2xzm_R          293 TIEAEPITKAEGQKGKNPQCTSLAWNALGKKLFAGF  328 (343)
T ss_dssp             ECCCCSGGGBTTBCCSCCCEEEEEECSSSCCEEEEE
T ss_pred             EeecCcchhhhhhcCCCCceEEEEECCCCCeEEEec
Confidence            332            234588999999999877654

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=100.00  E-value=2.1e-33  Score=245.78  Aligned_cols=277  Identities=21%  Similarity=0.298  Sum_probs=210.0

Q ss_pred             ccccccccceeEEEEcc-CCCEEEEeeCCCCeEEEeCCCCcEEEEec-------------CCCCceEEEEECC-CCCeEE
Q 021399            4 ILMKGHERPLTYLKYNK-DGDLLFSCAKDHTPTVWFADNGERLGTYR-------------GHNGAVWCCDVSR-DSMTLI   68 (313)
Q Consensus         4 ~~l~~h~~~v~~~~fs~-~g~~l~s~s~d~~i~iw~~~~~~~~~~~~-------------~H~~~V~~~~~~~-~~~~l~   68 (313)
                      .++++|.+.|.+++|+| ++++|++|+.||.|++||+.+++....+.             +|...|.+++|+| ++++|+
T Consensus        37 ~~~~~h~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~  116 (408)
T 4a11_B           37 DVERIHGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGMFT  116 (408)
T ss_dssp             EECCCCSSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEEECTTCTTCEE
T ss_pred             eeeeccCCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCCCcEEEEEEccCCCcEEE
Confidence            46788999999999999 99999999999999999999886654443             6999999999999 778999


Q ss_pred             EeeCCCcEEEEECCCCeEEEEecCCCCeeEEEeecCC----eEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecC
Q 021399           69 TGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGD----KLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKG  144 (313)
Q Consensus        69 s~s~D~~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  144 (313)
                      +++.|+.|++||+.+++....+........+.+.+..    .++....+.      .+.++++.      .+..+..+.+
T Consensus       117 s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~v~~~d~~------~~~~~~~~~~  184 (408)
T 4a11_B          117 SSSFDKTLKVWDTNTLQTADVFNFEETVYSHHMSPVSTKHCLVAVGTRGP------KVQLCDLK------SGSCSHILQG  184 (408)
T ss_dssp             EEETTSEEEEEETTTTEEEEEEECSSCEEEEEECSSCSSCCEEEEEESSS------SEEEEESS------SSCCCEEECC
T ss_pred             EEeCCCeEEEeeCCCCccceeccCCCceeeeEeecCCCCCcEEEEEcCCC------eEEEEeCC------CcceeeeecC
Confidence            9999999999999999988888877888888887633    333333332      23333332      2334566778


Q ss_pred             CCCceEEEEEccCCC-EEEEeeCCCeEEEEECCCCc-eeeecc------------cccCceeceEEEEECCCCCEEEEee
Q 021399          145 PQGRINRAVWGPLNR-TIISAGEDAIVRIWDTETGK-LLKESD------------KETGHKKTITSLAKAADGSHFLTGS  210 (313)
Q Consensus       145 ~~~~i~~~~~~~~~~-~i~t~~~d~~i~lwd~~~~~-~~~~~~------------~~~~h~~~v~~~~~s~~~~~l~s~s  210 (313)
                      |.+.|.++.|+|+++ .+++++.|+.|++||++++. .+..+.            ...+|...|.+++|+|++++|++++
T Consensus       185 ~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~  264 (408)
T 4a11_B          185 HRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVG  264 (408)
T ss_dssp             CCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEEEEEE
T ss_pred             CCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcCCCCEEEEec
Confidence            999999999999998 58899999999999997654 222221            1146889999999999999999999


Q ss_pred             CCCcEEEEECCCCcEEEEEecC------CceeEEEeccCCCEEEEcccccCceeEeeccCCCceeeeeeehhhhhhhccc
Q 021399          211 LDKSAKLWDARTLELIKTYVTE------RPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGV  284 (313)
Q Consensus       211 ~dg~i~iwd~~~~~~~~~~~~~------~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  284 (313)
                      .||.|++||+++++....+...      ..............+++++ .+ .            .+++||..+++.+..+
T Consensus       265 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~------------~i~v~d~~~~~~~~~~  330 (408)
T 4a11_B          265 TDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVP-YG-S------------TIAVYTVYSGEQITML  330 (408)
T ss_dssp             TTSCEEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEE-ET-T------------EEEEEETTTCCEEEEE
T ss_pred             CCCeEEEEECCCCccceeccccccccccccceeEEecCCCceEEEEe-cC-C------------EEEEEECcCCcceeee
Confidence            9999999999998765443211      1111111122223333322 22 1            3567777777777888


Q ss_pred             cccccceeEEEECCCCCeeEEE
Q 021399          285 KGHFGPINALAFNPDGKRYGFL  306 (313)
Q Consensus       285 ~~h~~~V~~~~fspdgk~~~~~  306 (313)
                      .+|.+.|++++|+|||+.++..
T Consensus       331 ~~~~~~v~~~~~s~~~~~l~s~  352 (408)
T 4a11_B          331 KGHYKTVDCCVFQSNFQELYSG  352 (408)
T ss_dssp             CCCSSCEEEEEEETTTTEEEEE
T ss_pred             ccCCCeEEEEEEcCCCCEEEEE
Confidence            8999999999999999988754

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.9e-34  Score=255.51  Aligned_cols=283  Identities=14%  Similarity=0.147  Sum_probs=194.4

Q ss_pred             cccccceeEEEEcc-CCCEEEEeeCCCCeEEEeCCC---Cc---EEEEecCCCCceEEEEECCCCCeEEEeeCCCcEEEE
Q 021399            7 KGHERPLTYLKYNK-DGDLLFSCAKDHTPTVWFADN---GE---RLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLW   79 (313)
Q Consensus         7 ~~h~~~v~~~~fs~-~g~~l~s~s~d~~i~iw~~~~---~~---~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~v~vW   79 (313)
                      .+|.+.|.+++|+| ++++|++|+.|+.|+|||+.+   +.   ....+ +|.+.|.+++|+|++++|++|+.|++|++|
T Consensus        60 ~~h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~l~s~s~dg~i~vw  138 (437)
T 3gre_A           60 ENEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYSSSLTY-DCSSTVTQITMIPNFDAFAVSSKDGQIIVL  138 (437)
T ss_dssp             TTTTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCCCSCSEEE-ECSSCEEEEEECTTSSEEEEEETTSEEEEE
T ss_pred             cCCCCceEEEEECCCCCCEEEEecCCceEEEeECcccccCcccceeeec-cCCCCEEEEEEeCCCCEEEEEeCCCEEEEE
Confidence            88999999999999 999999999999999999876   43   22233 599999999999999999999999999999


Q ss_pred             ECC---CCeEEEEec-------------CCCCeeEEE--eecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEE
Q 021399           80 NVE---TGAQLFTFN-------------FDSPARSVD--FAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLI  141 (313)
Q Consensus        80 d~~---~~~~~~~~~-------------~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  141 (313)
                      |++   +++......             .......+.  +.+++..++....     +..+.++++.      .+..+..
T Consensus       139 d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-----d~~i~iwd~~------~~~~~~~  207 (437)
T 3gre_A          139 KVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVALTN-----LSRVIIFDIR------TLERLQI  207 (437)
T ss_dssp             EEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEEET-----TSEEEEEETT------TCCEEEE
T ss_pred             EeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcCCCCEEEEEeC-----CCeEEEEeCC------CCeeeEE
Confidence            995   443332221             112233333  2233433333221     2223334331      2445666


Q ss_pred             ecC--CCCceEEEEEccCCCEEEEeeCCCeEEEEECCCCceeeecccccCceeceEEEEEC----CCCCEEEEeeCCCcE
Q 021399          142 LKG--PQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKA----ADGSHFLTGSLDKSA  215 (313)
Q Consensus       142 ~~~--~~~~i~~~~~~~~~~~i~t~~~d~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s----~~~~~l~s~s~dg~i  215 (313)
                      +.+  |.+.|.+++|+|+++++++|+.|+.|++||+++++++..+..  .|...|.+++++    +++.+|++|+.||.|
T Consensus       208 ~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~--~~~~~v~~~~~~~~~s~~~~~l~s~~~dg~i  285 (437)
T 3gre_A          208 IENSPRHGAVSSICIDEECCVLILGTTRGIIDIWDIRFNVLIRSWSF--GDHAPITHVEVCQFYGKNSVIVVGGSSKTFL  285 (437)
T ss_dssp             EECCGGGCCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEEBC--TTCEEEEEEEECTTTCTTEEEEEEESTTEEE
T ss_pred             EccCCCCCceEEEEECCCCCEEEEEcCCCeEEEEEcCCccEEEEEec--CCCCceEEEEeccccCCCccEEEEEcCCCcE
Confidence            666  788999999999999999999999999999999887765432  477789999554    568899999999999


Q ss_pred             EEEECCCCcEEEEEe---------------------------cCCceeEEEeccCCCEEEEcccccCceeEeeccCCCce
Q 021399          216 KLWDARTLELIKTYV---------------------------TERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKF  268 (313)
Q Consensus       216 ~iwd~~~~~~~~~~~---------------------------~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~  268 (313)
                      ++||+++++++..+.                           +...+.+++|+ .+ ..+++++.| ..+.+||.+.+..
T Consensus       286 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~-~~-~~l~s~~~d-~~i~~wd~~~~~~  362 (437)
T 3gre_A          286 TIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS-ND-KILLTDEAT-SSIVMFSLNELSS  362 (437)
T ss_dssp             EEEETTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE-TT-EEEEEEGGG-TEEEEEETTCGGG
T ss_pred             EEEEcCCCcEEEEEEcCCCCCccceecccccccccceecccccCCceEEEEEC-Cc-eEEEecCCC-CeEEEEECCCccc
Confidence            999999999888876                           22347778888 44 444444444 3466666554432


Q ss_pred             eeeee-------------------------ehhhhhhhccccccccceeEEEECCC--CCeeEEE
Q 021399          269 EAKFF-------------------------DKILQEEIGGVKGHFGPINALAFNPD--GKRYGFL  306 (313)
Q Consensus       269 ~~~~~-------------------------~~~~~~~~~~~~~h~~~V~~~~fspd--gk~~~~~  306 (313)
                      ...+.                         +......+.....|...|++++|+++  ++.++..
T Consensus       363 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~i~~~~~~~~~~l~s~  427 (437)
T 3gre_A          363 SKAVISPSRFSDVFIPTQVTANLTMLLRKMKRTSTHSVDDSLYHHDIINSISTCEVDETPLLVAC  427 (437)
T ss_dssp             CEEEECC--CCCEEEEEEEETTEEEEEEECC-------------CCCEEEEEEEESSSSEEEEEE
T ss_pred             ceEEecccccCceEEEEEeecceEEEEEecccccccccCcccccccceeeEeeeccCCceEEEEE
Confidence            21111                         11122222334459999999999999  5555543

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=100.00  E-value=3.5e-34  Score=251.35  Aligned_cols=235  Identities=22%  Similarity=0.336  Sum_probs=189.9

Q ss_pred             cccccccceeEEEEcc-CCCEEEEeeCCCCeEEEeCCCC-------cEEEEecCCCCceEEEEECCCC-CeEEEeeCCCc
Q 021399            5 LMKGHERPLTYLKYNK-DGDLLFSCAKDHTPTVWFADNG-------ERLGTYRGHNGAVWCCDVSRDS-MTLITGSADQT   75 (313)
Q Consensus         5 ~l~~h~~~v~~~~fs~-~g~~l~s~s~d~~i~iw~~~~~-------~~~~~~~~H~~~V~~~~~~~~~-~~l~s~s~D~~   75 (313)
                      .+.+|.+.|.+++|+| ++++|++|+.|+.|+|||+.++       +.+..+.+|...|.+++|+|++ ++|++++.|++
T Consensus        76 ~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~  155 (402)
T 2aq5_A           76 LVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNV  155 (402)
T ss_dssp             CBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTCCSSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTSC
T ss_pred             eEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCCccccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCCE
Confidence            5789999999999999 9999999999999999999988       5678899999999999999998 69999999999


Q ss_pred             EEEEECCCCeEEEEecCCCCeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEc
Q 021399           76 AKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWG  155 (313)
Q Consensus        76 v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~  155 (313)
                      |++||+++++.+..+.                                                  ..+|...|.++.|+
T Consensus       156 i~iwd~~~~~~~~~~~--------------------------------------------------~~~~~~~v~~~~~~  185 (402)
T 2aq5_A          156 ILVWDVGTGAAVLTLG--------------------------------------------------PDVHPDTIYSVDWS  185 (402)
T ss_dssp             EEEEETTTTEEEEEEC--------------------------------------------------TTTCCSCEEEEEEC
T ss_pred             EEEEECCCCCccEEEe--------------------------------------------------cCCCCCceEEEEEC
Confidence            9999998875432210                                                  03467789999999


Q ss_pred             cCCCEEEEeeCCCeEEEEECCCCceeeecccccCceec-eEEEEECCCCCEEEEe---eCCCcEEEEECCCCcE---EEE
Q 021399          156 PLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKT-ITSLAKAADGSHFLTG---SLDKSAKLWDARTLEL---IKT  228 (313)
Q Consensus       156 ~~~~~i~t~~~d~~i~lwd~~~~~~~~~~~~~~~h~~~-v~~~~~s~~~~~l~s~---s~dg~i~iwd~~~~~~---~~~  228 (313)
                      |++++|++++.|+.|++||+++++.+..+.  .+|... +.+++|+|++.+|++|   +.|+.|++||+++++.   ...
T Consensus       186 ~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~~~~~~~~  263 (402)
T 2aq5_A          186 RDGALICTSCRDKRVRVIEPRKGTVVAEKD--RPHEGTRPVHAVFVSEGKILTTGFSRMSERQVALWDTKHLEEPLSLQE  263 (402)
T ss_dssp             TTSSCEEEEETTSEEEEEETTTTEEEEEEE--CSSCSSSCCEEEECSTTEEEEEEECTTCCEEEEEEETTBCSSCSEEEE
T ss_pred             CCCCEEEEEecCCcEEEEeCCCCceeeeec--cCCCCCcceEEEEcCCCcEEEEeccCCCCceEEEEcCccccCCceEEe
Confidence            999999999999999999999988776552  246554 8999999999999999   7999999999998654   233


Q ss_pred             EecCCceeEEEeccCCCEEEEcccccCceeEeeccCCCceeeeeeehhhhhh-hccccc--cccceeEEEECCCCCeeE
Q 021399          229 YVTERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEE-IGGVKG--HFGPINALAFNPDGKRYG  304 (313)
Q Consensus       229 ~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~--h~~~V~~~~fspdgk~~~  304 (313)
                      +.+...+.+++|+|++..++++++.|+ .+            ++||..+++. +..+..  |.++|.+++|+||++.++
T Consensus       264 ~~~~~~v~~~~~s~~~~~l~~~g~~dg-~i------------~i~d~~~~~~~~~~l~~~~~~~~v~~~~~sp~~~~~~  329 (402)
T 2aq5_A          264 LDTSSGVLLPFFDPDTNIVYLCGKGDS-SI------------RYFEITSEAPFLHYLSMFSSKESQRGMGYMPKRGLEV  329 (402)
T ss_dssp             CCCCSSCEEEEEETTTTEEEEEETTCS-CE------------EEEEECSSTTCEEEEEEECCSSCCSEEEECCGGGSCG
T ss_pred             ccCCCceeEEEEcCCCCEEEEEEcCCC-eE------------EEEEecCCCcceEeecccccCCcccceEEecccccce
Confidence            335567899999999999887765443 33            3444443332 222333  569999999999998754

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=100.00  E-value=1.5e-32  Score=232.75  Aligned_cols=237  Identities=24%  Similarity=0.440  Sum_probs=191.1

Q ss_pred             ccccccccceeEEEEccCCCEEEEeeCCCCeEEEeCCCCcEEEEecCCCCceEEEEECCCCCeEEEeeCCCcEEEEECCC
Q 021399            4 ILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVET   83 (313)
Q Consensus         4 ~~l~~h~~~v~~~~fs~~g~~l~s~s~d~~i~iw~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~v~vWd~~~   83 (313)
                      ..+.+|...|.+++|+|++++|++++.|+.|++||+.+++.+..+.+|...|.+++|+|+++++++|+.|++|++||+++
T Consensus        59 ~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~  138 (312)
T 4ery_A           59 KTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKT  138 (312)
T ss_dssp             EEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTT
T ss_pred             hhhccCCCceEEEEEcCCCCEEEEECCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCC
Confidence            36789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CeEEEEec-CCCCeeEEEeecCCeEEEE-ECCCceeccccceeeeeeeCCCCCCCceEEEe-cCCCCceEEEEEccCCCE
Q 021399           84 GAQLFTFN-FDSPARSVDFAVGDKLAVI-TTDPFMELNSAIHVKRIARDPADQGGESVLIL-KGPQGRINRAVWGPLNRT  160 (313)
Q Consensus        84 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~  160 (313)
                      ++.+..+. +..++..+.|.+++..++. ..+.      .+.++++.      .+..+..+ ..+...+..+.|+|++++
T Consensus       139 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~------~i~~wd~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~  206 (312)
T 4ery_A          139 GKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDG------LCRIWDTA------SGQCLKTLIDDDNPPVSFVKFSPNGKY  206 (312)
T ss_dssp             CCEEEEECCCSSCEEEEEECTTSSEEEEEETTS------CEEEEETT------TCCEEEEECCSSCCCEEEEEECTTSSE
T ss_pred             CEEEEEecCCCCcEEEEEEcCCCCEEEEEeCCC------cEEEEECC------CCceeeEEeccCCCceEEEEECCCCCE
Confidence            88877665 4567888999987655444 3333      23333321      12233333 345667899999999999


Q ss_pred             EEEeeCCCeEEEEECCCCceeeecccccCceeceEEEEECCCCCEEEEeeCCCcEEEEECCCCcEEEEEe-cCCceeEEE
Q 021399          161 IISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYV-TERPVNAVT  239 (313)
Q Consensus       161 i~t~~~d~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~-~~~~~~~~~  239 (313)
                      +++++.|+.|++||+.+++.+..+.........+......+++.+|++|+.||.|++||+++++++..+. +...+.+++
T Consensus       207 l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~  286 (312)
T 4ery_A          207 ILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTA  286 (312)
T ss_dssp             EEEEETTTEEEEEETTTTEEEEEECSSCCSSSCCCEEEECSSSCEEEECCTTSCEEEEETTTCCEEEEECCCSSCEEEEE
T ss_pred             EEEEcCCCeEEEEECCCCcEEEEEEecCCceEEEEEEEEeCCCcEEEEECCCCEEEEEECCCchhhhhhhccCCcEEEEe
Confidence            9999999999999999988776654322112223334455788999999999999999999999998886 466799999


Q ss_pred             eccCCCEEEEccc
Q 021399          240 MSPLLDHVVLGGG  252 (313)
Q Consensus       240 ~~p~~~~~~~~~~  252 (313)
                      |+|.+..+++++.
T Consensus       287 ~~p~~~~l~s~~~  299 (312)
T 4ery_A          287 CHPTENIIASAAL  299 (312)
T ss_dssp             ECSSSSEEEEEEC
T ss_pred             ecCcCCceEEEEc
Confidence            9999998887654

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=100.00  E-value=2.1e-33  Score=240.05  Aligned_cols=259  Identities=15%  Similarity=0.262  Sum_probs=199.4

Q ss_pred             ccccccccceeEEEEccCCCEEEEeeCCCCeEEEeCCCC----cEEEEecCCCCceEEEEECC--CCCeEEEeeCCCcEE
Q 021399            4 ILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNG----ERLGTYRGHNGAVWCCDVSR--DSMTLITGSADQTAK   77 (313)
Q Consensus         4 ~~l~~h~~~v~~~~fs~~g~~l~s~s~d~~i~iw~~~~~----~~~~~~~~H~~~V~~~~~~~--~~~~l~s~s~D~~v~   77 (313)
                      ..+.+|.+.|.+++|+|++++|++|+.|+.|++||+.++    +....+.+|.+.|.+++|+|  ++++|++++.|++|+
T Consensus         5 ~~~~gH~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~   84 (351)
T 3f3f_A            5 PFDSGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVK   84 (351)
T ss_dssp             CEECCCSSCEEEEEECSSSSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSCEE
T ss_pred             ccCcccccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeEE
Confidence            467899999999999999999999999999999999876    46778899999999999999  589999999999999


Q ss_pred             EEECCCCeEEEEecCCCCeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEccC
Q 021399           78 LWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPL  157 (313)
Q Consensus        78 vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~  157 (313)
                      +||+++++...                                           .......+..+.+|.+.|.++.|+|+
T Consensus        85 vwd~~~~~~~~-------------------------------------------~~~~~~~~~~~~~~~~~v~~~~~~~~  121 (351)
T 3f3f_A           85 LWEEDPDQEEC-------------------------------------------SGRRWNKLCTLNDSKGSLYSVKFAPA  121 (351)
T ss_dssp             EEEECTTSCTT-------------------------------------------SSCSEEEEEEECCCSSCEEEEEECCG
T ss_pred             EEecCCCcccc-------------------------------------------cccCcceeeeecccCCceeEEEEcCC
Confidence            99987653200                                           00001234455678889999999999


Q ss_pred             --CCEEEEeeCCCeEEEEECCCCceeeecc----------cccCceeceEEEEECCC---CCEEEEeeCCCcEEEEECCC
Q 021399          158 --NRTIISAGEDAIVRIWDTETGKLLKESD----------KETGHKKTITSLAKAAD---GSHFLTGSLDKSAKLWDART  222 (313)
Q Consensus       158 --~~~i~t~~~d~~i~lwd~~~~~~~~~~~----------~~~~h~~~v~~~~~s~~---~~~l~s~s~dg~i~iwd~~~  222 (313)
                        +.++++++.|+.|++||+.+++.+..+.          ....|...+.+++|+|+   +..+++++.|+.+.+|+...
T Consensus       122 ~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~  201 (351)
T 3f3f_A          122 HLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKD  201 (351)
T ss_dssp             GGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCSCCCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTT
T ss_pred             CCCcEEEEecCCCcEEEecCCChHHhccccccccccccccccCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCC
Confidence              9999999999999999998776543221          11257788999999997   99999999999998888887


Q ss_pred             CcE--EEEEe-cCCceeEEEeccCCC---EEEEcccccCceeEeeccCCCce----------------------------
Q 021399          223 LEL--IKTYV-TERPVNAVTMSPLLD---HVVLGGGQDASAVTTTDHRAGKF----------------------------  268 (313)
Q Consensus       223 ~~~--~~~~~-~~~~~~~~~~~p~~~---~~~~~~~~~~~~~~~~~~~~~~~----------------------------  268 (313)
                      ++.  +..+. +...+.+++|+|++.   .++++++.| +.+.+||.+.+..                            
T Consensus       202 ~~~~~~~~~~~h~~~i~~~~~~p~~~~~~~~l~s~~~d-g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  280 (351)
T 3f3f_A          202 GKLHVAAKLPGHKSLIRSISWAPSIGRWYQLIATGCKD-GRIRIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRS  280 (351)
T ss_dssp             SCEEEEEECCCCCSCEEEEEECCCSSCSSEEEEEEETT-SCEEEEEEEECC-----------------------------
T ss_pred             CceeeeeecCCCCcceeEEEECCCCCCcceEEEEEcCC-CeEEEEeCCCCcCccccCCcccceeccCCCccccccccccc
Confidence            765  44443 456899999999983   445554444 4466666543211                            


Q ss_pred             ------eeeeeehhhhhhhccccccccceeEEEECCCCCeeEEE
Q 021399          269 ------EAKFFDKILQEEIGGVKGHFGPINALAFNPDGKRYGFL  306 (313)
Q Consensus       269 ------~~~~~~~~~~~~~~~~~~h~~~V~~~~fspdgk~~~~~  306 (313)
                            ...+|+....+.+..+.+|.++|++++|+|||+.++..
T Consensus       281 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~  324 (351)
T 3f3f_A          281 DSNTEEKAELQSNLQVELLSEHDDHNGEVWSVSWNLTGTILSSA  324 (351)
T ss_dssp             ----------CCSEEEEEEEEECTTSSCEEEEEECSSSCCEEEE
T ss_pred             ccccceeeeecccccccEEEEEecccccEEEEEEcCCCCEEEEe
Confidence                  11223333345666788999999999999999988764

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=100.00  E-value=1.1e-33  Score=243.32  Aligned_cols=284  Identities=16%  Similarity=0.171  Sum_probs=203.9

Q ss_pred             cccccccceeEEEEccCCCEEE-EeeC---CCCeEEEeCCCCcEEEEe-cCCCCceEEEEECCC---CCeEEEeeCCCcE
Q 021399            5 LMKGHERPLTYLKYNKDGDLLF-SCAK---DHTPTVWFADNGERLGTY-RGHNGAVWCCDVSRD---SMTLITGSADQTA   76 (313)
Q Consensus         5 ~l~~h~~~v~~~~fs~~g~~l~-s~s~---d~~i~iw~~~~~~~~~~~-~~H~~~V~~~~~~~~---~~~l~s~s~D~~v   76 (313)
                      ++++|...|.+++|+|+++.++ +|+.   |+.|+|||+.+++..... .+|...|.+++|+|+   ++++++|+.|+.|
T Consensus        13 ~~~~h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i   92 (357)
T 3i2n_A           13 IQKGFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLLREIEKAKPIKCGTFGATSLQQRYLATGDFGGNL   92 (357)
T ss_dssp             EEEECSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEEEEEEEESSCEEEEECTTCCTTTCCEEEEETTSCE
T ss_pred             hccCCCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCcccceeeecccCcEEEEEEcCCCCCCceEEEecCCCeE
Confidence            5678999999999999997555 5555   999999999998865443 379999999999998   6999999999999


Q ss_pred             EEEECCCCe-EEEEec-CCCCeeEEEe------ecCCe-EEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCC
Q 021399           77 KLWNVETGA-QLFTFN-FDSPARSVDF------AVGDK-LAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQG  147 (313)
Q Consensus        77 ~vWd~~~~~-~~~~~~-~~~~~~~~~~------~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  147 (313)
                      ++||+.+++ .+..+. +...+..+.+      ++++. ++.+..+..      +.++++..     ....+..+..+.+
T Consensus        93 ~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~------i~vwd~~~-----~~~~~~~~~~~~~  161 (357)
T 3i2n_A           93 HIWNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGT------VKVWDPRQ-----KDDPVANMEPVQG  161 (357)
T ss_dssp             EEECTTSCSSCSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSC------EEEECTTS-----CSSCSEEECCCTT
T ss_pred             EEEeCCCCCccEEEEEecccceEEEeeccccccCCCccEEEEEeCCCe------EEEEeCCC-----CCCcceeccccCC
Confidence            999999876 555443 4567777755      34444 444333332      23333221     1112334433333


Q ss_pred             ----ceEEEE----EccCCCEEEEeeCCCeEEEEECCCCceeeecccccCceeceEEEEECC---CCCEEEEeeCCCcEE
Q 021399          148 ----RINRAV----WGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAA---DGSHFLTGSLDKSAK  216 (313)
Q Consensus       148 ----~i~~~~----~~~~~~~i~t~~~d~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~---~~~~l~s~s~dg~i~  216 (313)
                          .+.++.    |+|+++++++++.|+.|++||+++++....    ..|...+.+++|+|   ++.++++++.||.|+
T Consensus       162 ~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~----~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~  237 (357)
T 3i2n_A          162 ENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMALRWE----TNIKNGVCSLEFDRKDISMNKLVATSLEGKFH  237 (357)
T ss_dssp             SCCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTTEEEEE----EECSSCEEEEEESCSSSSCCEEEEEESTTEEE
T ss_pred             CCCCceEEEEEEeccCCCCCEEEEEccCCeEEEEECccCceeee----cCCCCceEEEEcCCCCCCCCEEEEECCCCeEE
Confidence                677777    788999999999999999999998876443    24778999999999   999999999999999


Q ss_pred             EEECCCCcEEEEE------ecCCceeEEEeccCCCEEEEcccccCceeEeeccCCCceeeeeeeh--------hhhhhhc
Q 021399          217 LWDARTLELIKTY------VTERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDK--------ILQEEIG  282 (313)
Q Consensus       217 iwd~~~~~~~~~~------~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~  282 (313)
                      +||+++++++..+      .+...+.+++|+|++..++++++.+ +.+.+||.+.+...... +.        .+.+.+.
T Consensus       238 i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d-g~i~iwd~~~~~~~~~~-~~~g~~~~~~~~~~~~~  315 (357)
T 3i2n_A          238 VFDMRTQHPTKGFASVSEKAHKSTVWQVRHLPQNRELFLTAGGA-GGLHLWKYEYPIQRSKK-DSEGIEMGVAGSVSLLQ  315 (357)
T ss_dssp             EEEEEEEETTTEEEEEEEECCSSCEEEEEEETTEEEEEEEEETT-SEEEEEEEECCSCC--C-CTTSCCCCCCCEEEEEE
T ss_pred             EEeCcCCCcccceeeeccCCCcCCEEEEEECCCCCcEEEEEeCC-CcEEEeecCCCcccccc-cCCCCccccccccceee
Confidence            9999886654433      2566899999999988556555544 34556665432211100 00        0113345


Q ss_pred             cccccccceeEEEECCCCCeeEE
Q 021399          283 GVKGHFGPINALAFNPDGKRYGF  305 (313)
Q Consensus       283 ~~~~h~~~V~~~~fspdgk~~~~  305 (313)
                      .+.+|.++|++++|+|||+.+++
T Consensus       316 ~~~~~~~~v~~~~~s~~~~~l~~  338 (357)
T 3i2n_A          316 NVTLSTQPISSLDWSPDKRGLCV  338 (357)
T ss_dssp             EEECCSSCEEEEEECSSSTTEEE
T ss_pred             ccccCCCCeeEEEEcCCCCeEEE
Confidence            67789999999999999999875

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=100.00  E-value=1.2e-33  Score=242.05  Aligned_cols=277  Identities=14%  Similarity=0.079  Sum_probs=212.0

Q ss_pred             cccccccceeEEEEccCCCEEEEeeCCCCeEEEeCCCCc---EEEEecCCCCceEEEEECCCCC-eEEEeeCCCcEEEEE
Q 021399            5 LMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGE---RLGTYRGHNGAVWCCDVSRDSM-TLITGSADQTAKLWN   80 (313)
Q Consensus         5 ~l~~h~~~v~~~~fs~~g~~l~s~s~d~~i~iw~~~~~~---~~~~~~~H~~~V~~~~~~~~~~-~l~s~s~D~~v~vWd   80 (313)
                      +..+|.+.|.+++|+|++++|++++.|+.|++|++.+++   ....+.+|...|.+++|+|+++ ++++|+.||.|++||
T Consensus         6 ~~~~h~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd   85 (342)
T 1yfq_A            6 IEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVD   85 (342)
T ss_dssp             CSSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEEEC
T ss_pred             cccCCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCccccceeeeecCCceEEEEECCCCCcEEEEEcCCCeEEEEE
Confidence            457899999999999999999999999999999998877   3456679999999999999999 999999999999999


Q ss_pred             C-CCCeEEEEec--CCCCeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCC---CCceEEEecCCCCceEEEEE
Q 021399           81 V-ETGAQLFTFN--FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQ---GGESVLILKGPQGRINRAVW  154 (313)
Q Consensus        81 ~-~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~i~~~~~  154 (313)
                      + .+++......  +...+..+.|.++..++....+....      ++++.......   ....+..+. |...+.++.|
T Consensus        86 ~~~~~~~~~~~~~~~~~~v~~l~~~~~~~l~s~~~d~~i~------iwd~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~  158 (342)
T 1yfq_A           86 LIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDGLIE------VIDPRNYGDGVIAVKNLNSNNTK-VKNKIFTMDT  158 (342)
T ss_dssp             SSSSSSEEECBSCCCCSCEEEEEEETTTEEEEEETTSEEE------EECHHHHTTBCEEEEESCSSSSS-SCCCEEEEEE
T ss_pred             eccCCceEeccccCCCCceEEEEeCCCCEEEEEcCCCeEE------EEcccccccccccccCCeeeEEe-eCCceEEEEe
Confidence            9 8887755555  66788899999855555555544332      33222100000   000111122 6778999999


Q ss_pred             ccCCCEEEEeeCCCeEEEEECCC-CceeeecccccCceeceEEEEECC-CCCEEEEeeCCCcEEEEECCCC------cEE
Q 021399          155 GPLNRTIISAGEDAIVRIWDTET-GKLLKESDKETGHKKTITSLAKAA-DGSHFLTGSLDKSAKLWDARTL------ELI  226 (313)
Q Consensus       155 ~~~~~~i~t~~~d~~i~lwd~~~-~~~~~~~~~~~~h~~~v~~~~~s~-~~~~l~s~s~dg~i~iwd~~~~------~~~  226 (313)
                      +|++  +++++.|+.|++||+.+ +...... ....|...+.+++|+| +++++++++.||.|++||++..      ++.
T Consensus       159 ~~~~--l~~~~~d~~i~i~d~~~~~~~~~~~-~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~  235 (342)
T 1yfq_A          159 NSSR--LIVGMNNSQVQWFRLPLCEDDNGTI-EESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKR  235 (342)
T ss_dssp             CSSE--EEEEESTTEEEEEESSCCTTCCCEE-EECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTC
T ss_pred             cCCc--EEEEeCCCeEEEEECCcccccccee-eecCCCCceeEEEECCCCCCEEEEEecCCcEEEEEEcCCCcccccccc
Confidence            9876  99999999999999987 4432111 1235778999999999 9999999999999999999876      666


Q ss_pred             EEEecC-C---------ceeEEEeccCCCEEEEcccccCceeEeeccCCCceeeeeeehhhhhhhcccccc-ccceeEEE
Q 021399          227 KTYVTE-R---------PVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGH-FGPINALA  295 (313)
Q Consensus       227 ~~~~~~-~---------~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h-~~~V~~~~  295 (313)
                      ..+... .         .+.+++|+|++..+++++. ++             .+++||..+++.+..+.+| .++|++++
T Consensus       236 ~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~-dg-------------~i~vwd~~~~~~~~~~~~~h~~~v~~~~  301 (342)
T 1yfq_A          236 FAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGS-DG-------------IISCWNLQTRKKIKNFAKFNEDSVVKIA  301 (342)
T ss_dssp             EEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEET-TS-------------CEEEEETTTTEEEEECCCCSSSEEEEEE
T ss_pred             eeeecccccccccccceeEEEEEEcCCCCEEEEecC-Cc-------------eEEEEcCccHhHhhhhhcccCCCceEec
Confidence            666432 2         7999999999988776543 22             3466777777777778888 99999999


Q ss_pred             ECCCCCeeEEEE
Q 021399          296 FNPDGKRYGFLL  307 (313)
Q Consensus       296 fspdgk~~~~~~  307 (313)
                        |||+.++...
T Consensus       302 --~~~~~l~s~s  311 (342)
T 1yfq_A          302 --CSDNILCLAT  311 (342)
T ss_dssp             --ECSSEEEEEE
T ss_pred             --CCCCeEEEEe
Confidence              9999988754

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=100.00  E-value=5.9e-33  Score=244.02  Aligned_cols=269  Identities=15%  Similarity=0.202  Sum_probs=204.2

Q ss_pred             cccccceeEEEEccCCC-EEEEeeCCCCeEEEeC----CCCc------EEEEecC----------CCCceEEEEECCCCC
Q 021399            7 KGHERPLTYLKYNKDGD-LLFSCAKDHTPTVWFA----DNGE------RLGTYRG----------HNGAVWCCDVSRDSM   65 (313)
Q Consensus         7 ~~h~~~v~~~~fs~~g~-~l~s~s~d~~i~iw~~----~~~~------~~~~~~~----------H~~~V~~~~~~~~~~   65 (313)
                      ..|.++|.+++|+|+|+ +|++|+.|+.|++|++    .+++      ....+..          |.+.|.+++|+|+++
T Consensus        42 ~~~~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~  121 (425)
T 1r5m_A           42 IVKLDNIVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASSGKTTNQVTCLAWSHDGN  121 (425)
T ss_dssp             EEECSCCSEEEECSSCTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEECCCCCC------CBCEEEEEECTTSS
T ss_pred             eeccCceEEEEECCCCCcEEEEecCCceEEEEEEecccCCccccccccccccccccccccccccCCCCceEEEEEcCCCC
Confidence            34558999999999999 9999999999999999    8887      4555544          788999999999999


Q ss_pred             eEEEeeCCCcEEEEECCCCeEEEEec-CCCCeeEEEeecCCeEEEE-ECCCceeccccceeeeeeeCCCCCCCceEEEec
Q 021399           66 TLITGSADQTAKLWNVETGAQLFTFN-FDSPARSVDFAVGDKLAVI-TTDPFMELNSAIHVKRIARDPADQGGESVLILK  143 (313)
Q Consensus        66 ~l~s~s~D~~v~vWd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  143 (313)
                      +|++++.|+.|++|| .+++.+..+. +..++..+.|.+++..++. ..+..      +.++++.      .+..+..+.
T Consensus       122 ~l~~~~~dg~i~i~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~------i~iwd~~------~~~~~~~~~  188 (425)
T 1r5m_A          122 SIVTGVENGELRLWN-KTGALLNVLNFHRAPIVSVKWNKDGTHIISMDVENV------TILWNVI------SGTVMQHFE  188 (425)
T ss_dssp             EEEEEETTSCEEEEE-TTSCEEEEECCCCSCEEEEEECTTSSEEEEEETTCC------EEEEETT------TTEEEEEEC
T ss_pred             EEEEEeCCCeEEEEe-CCCCeeeeccCCCccEEEEEECCCCCEEEEEecCCe------EEEEECC------CCcEEEEee
Confidence            999999999999999 4555555554 5678899999987665444 33332      2223221      123344444


Q ss_pred             CCCCc---------------eEEEEEccCCCEEEEeeCCCeEEEEECCCCceeeecccccCceeceEEEEECCCCCEEEE
Q 021399          144 GPQGR---------------INRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLT  208 (313)
Q Consensus       144 ~~~~~---------------i~~~~~~~~~~~i~t~~~d~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s  208 (313)
                      .+...               +..+.|+|++ .+++++.|+.|++||+.+++.+..+.   +|...|.+++|+|++.+|++
T Consensus       189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~i~~~d~~~~~~~~~~~---~~~~~i~~~~~~~~~~~l~~  264 (425)
T 1r5m_A          189 LKETGGSSINAENHSGDGSLGVDVEWVDDD-KFVIPGPKGAIFVYQITEKTPTGKLI---GHHGPISVLEFNDTNKLLLS  264 (425)
T ss_dssp             CC---------------CCCBSCCEEEETT-EEEEECGGGCEEEEETTCSSCSEEEC---CCSSCEEEEEEETTTTEEEE
T ss_pred             ccccCccceeeccccCCcceeeEEEEcCCC-EEEEEcCCCeEEEEEcCCCceeeeec---cCCCceEEEEECCCCCEEEE
Confidence            44443               8888899874 58899999999999999887665543   58889999999999999999


Q ss_pred             eeCCCcEEEEECCCCcEEEEEe-cCCceeEEEeccCCCEEEEcccccCceeEeeccCCCceeeeeeehhhhhhhcccccc
Q 021399          209 GSLDKSAKLWDARTLELIKTYV-TERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGH  287 (313)
Q Consensus       209 ~s~dg~i~iwd~~~~~~~~~~~-~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h  287 (313)
                      ++.|+.|++||+++++++..+. +...+.+++|+|++ .+++ ++.++             .+++||..+++.+..+..|
T Consensus       265 ~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~-~~~d~-------------~i~i~d~~~~~~~~~~~~~  329 (425)
T 1r5m_A          265 ASDDGTLRIWHGGNGNSQNCFYGHSQSIVSASWVGDD-KVIS-CSMDG-------------SVRLWSLKQNTLLALSIVD  329 (425)
T ss_dssp             EETTSCEEEECSSSBSCSEEECCCSSCEEEEEEETTT-EEEE-EETTS-------------EEEEEETTTTEEEEEEECT
T ss_pred             EcCCCEEEEEECCCCccceEecCCCccEEEEEECCCC-EEEE-EeCCC-------------cEEEEECCCCcEeEecccC
Confidence            9999999999999998887775 56789999999988 4444 33332             3456666666666677789


Q ss_pred             ccceeEEEECCCCCeeEEEE
Q 021399          288 FGPINALAFNPDGKRYGFLL  307 (313)
Q Consensus       288 ~~~V~~~~fspdgk~~~~~~  307 (313)
                      ..+|++++|+|+|+.++...
T Consensus       330 ~~~i~~~~~s~~~~~l~~~~  349 (425)
T 1r5m_A          330 GVPIFAGRISQDGQKYAVAF  349 (425)
T ss_dssp             TCCEEEEEECTTSSEEEEEE
T ss_pred             CccEEEEEEcCCCCEEEEEE
Confidence            99999999999999887643

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=100.00  E-value=3.1e-32  Score=235.13  Aligned_cols=234  Identities=18%  Similarity=0.249  Sum_probs=192.5

Q ss_pred             cccccccceeEEEEccCCCEEEEeeCCCCeEEEeCCCC------cEEEEecCCCCceEEEEECCCCCeEEEeeCCCcEEE
Q 021399            5 LMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNG------ERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKL   78 (313)
Q Consensus         5 ~l~~h~~~v~~~~fs~~g~~l~s~s~d~~i~iw~~~~~------~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~v~v   78 (313)
                      .+..|...|.+++|+|+|++|++|+.|+.+++|++...      .....+.+|.+.|.+++|+|+++.+++++.|++|++
T Consensus       101 ~~~~~~~~v~~~~~sp~g~~lasg~~d~~i~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~D~~v~l  180 (354)
T 2pbi_B          101 AVTMPCTWVMACAYAPSGCAIACGGLDNKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCAL  180 (354)
T ss_dssp             EEECSSSCCCEEEECTTSSEEEEESTTSEEEEEECCCCTTCCSGGGCEEEEECSSCEEEEEECSSSSEEEEEETTSEEEE
T ss_pred             EEecCCCCEEEEEECCCCCEEEEeeCCCCEEEEEEeccccccccccceeeeccCCcEEEEEEeCCCCEEEEEeCCCcEEE
Confidence            45678889999999999999999999999999998643      345678899999999999999999999999999999


Q ss_pred             EECCCCeEEEEec-CCCCeeEEEeecC---CeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEE
Q 021399           79 WNVETGAQLFTFN-FDSPARSVDFAVG---DKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVW  154 (313)
Q Consensus        79 Wd~~~~~~~~~~~-~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~  154 (313)
                      ||+++++.+..+. +...+..+.+.+.   ..++.+..+..      +.+|++.      .+..+..+.+|...|.+++|
T Consensus       181 wd~~~~~~~~~~~~h~~~v~~~~~~~~~~g~~l~sgs~Dg~------v~~wd~~------~~~~~~~~~~h~~~v~~v~~  248 (354)
T 2pbi_B          181 WDVESGQLLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKK------AMVWDMR------SGQCVQAFETHESDVNSVRY  248 (354)
T ss_dssp             EETTTCCEEEEEECCSSCEEEEEECCCSSCCEEEEEETTSC------EEEEETT------TCCEEEEECCCSSCEEEEEE
T ss_pred             EeCCCCeEEEEEcCCCCCeEEEEEEeCCCCCEEEEEeCCCe------EEEEECC------CCcEEEEecCCCCCeEEEEE
Confidence            9999998887765 4567778888763   34555544433      3334332      24566778899999999999


Q ss_pred             ccCCCEEEEeeCCCeEEEEECCCCceeeecccccCceeceEEEEECCCCCEEEEeeCCCcEEEEECCCCcEEEEEe-cCC
Q 021399          155 GPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYV-TER  233 (313)
Q Consensus       155 ~~~~~~i~t~~~d~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~-~~~  233 (313)
                      +|+++.|++|+.|++|++||++..+.+..... ..+...+.+++|+|++.+|++|+.|++|++||+.+++++..+. +..
T Consensus       249 ~p~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~-~~~~~~~~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~l~~h~~  327 (354)
T 2pbi_B          249 YPSGDAFASGSDDATCRLYDLRADREVAIYSK-ESIIFGASSVDFSLSGRLLFAGYNDYTINVWDVLKGSRVSILFGHEN  327 (354)
T ss_dssp             CTTSSEEEEEETTSCEEEEETTTTEEEEEECC-TTCCSCEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEECCCSS
T ss_pred             eCCCCEEEEEeCCCeEEEEECCCCcEEEEEcC-CCcccceeEEEEeCCCCEEEEEECCCcEEEEECCCCceEEEEECCCC
Confidence            99999999999999999999988766554332 2344578999999999999999999999999999999888775 567


Q ss_pred             ceeEEEeccCCCEEEEcc
Q 021399          234 PVNAVTMSPLLDHVVLGG  251 (313)
Q Consensus       234 ~~~~~~~~p~~~~~~~~~  251 (313)
                      .+.+++|+|++..+++++
T Consensus       328 ~v~~l~~spdg~~l~sgs  345 (354)
T 2pbi_B          328 RVSTLRVSPDGTAFCSGS  345 (354)
T ss_dssp             CEEEEEECTTSSCEEEEE
T ss_pred             cEEEEEECCCCCEEEEEc
Confidence            899999999999877654

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=100.00  E-value=2.1e-33  Score=242.20  Aligned_cols=275  Identities=16%  Similarity=0.254  Sum_probs=208.3

Q ss_pred             ccccccccceeEEEEccC----CCEEEEeeCCCCeEEEeCCCCcEEEEecC-----CCCceEEEEECCC----CCeEEEe
Q 021399            4 ILMKGHERPLTYLKYNKD----GDLLFSCAKDHTPTVWFADNGERLGTYRG-----HNGAVWCCDVSRD----SMTLITG   70 (313)
Q Consensus         4 ~~l~~h~~~v~~~~fs~~----g~~l~s~s~d~~i~iw~~~~~~~~~~~~~-----H~~~V~~~~~~~~----~~~l~s~   70 (313)
                      .++.+|.++|.+++|+|+    ...+++++.++.|++||..+++.+..+..     |...|.+++|+|+    +++|++|
T Consensus        12 ~~~~~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~   91 (366)
T 3k26_A           12 SLKEDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVA   91 (366)
T ss_dssp             EEECTTCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTTTCCEEEEEE
T ss_pred             EeecCCCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCCCCCCEEEEe
Confidence            355689999999999984    45677777778999999998877666653     6678999999998    6699999


Q ss_pred             eCCCcEEEEECCCCeEEEEec-CCCCeeEEEeec-CCeEEEE-ECCCceeccccceeeeeeeCCCCCCCceEEEe---cC
Q 021399           71 SADQTAKLWNVETGAQLFTFN-FDSPARSVDFAV-GDKLAVI-TTDPFMELNSAIHVKRIARDPADQGGESVLIL---KG  144 (313)
Q Consensus        71 s~D~~v~vWd~~~~~~~~~~~-~~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~  144 (313)
                      +.||+|++||+.+++.+..+. +..++..+.|.+ +...++. ..+.      .+.++++.      .++.+..+   .+
T Consensus        92 ~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg------~i~iwd~~------~~~~~~~~~~~~~  159 (366)
T 3k26_A           92 GSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDH------ALRLWNIQ------TDTLVAIFGGVEG  159 (366)
T ss_dssp             ETTCEEEEECTTTCCEEEEEESCCSCEEEEEECSSCTTEEEEEETTS------CEEEEETT------TTEEEEEECSTTS
T ss_pred             cCCCEEEEEEchhceEeeeecCCCCcEEEEEECCCCCCEEEEEeCCC------eEEEEEee------cCeEEEEeccccc
Confidence            999999999999998887775 677899999998 5554444 3333      23334331      23445555   67


Q ss_pred             CCCceEEEEEccCCCEEEEeeCCCeEEEEECCCCceeeecc-------------------------cccCceeceEEEEE
Q 021399          145 PQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESD-------------------------KETGHKKTITSLAK  199 (313)
Q Consensus       145 ~~~~i~~~~~~~~~~~i~t~~~d~~i~lwd~~~~~~~~~~~-------------------------~~~~h~~~v~~~~~  199 (313)
                      |...|.++.|+|+++++++++.|+.|++||+.+++....+.                         ...+|...|.+++|
T Consensus       160 ~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  239 (366)
T 3k26_A          160 HRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRW  239 (366)
T ss_dssp             CSSCEEEEEECTTSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEE
T ss_pred             ccCceeEEEECCCCCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcceEEEEEE
Confidence            89999999999999999999999999999998765443221                         11238889999999


Q ss_pred             CCCCCEEEEeeCCCcEEEEECCCCcE--------------EEEEe-cCCceeEEEeccC--CCEEEEcccccCceeEeec
Q 021399          200 AADGSHFLTGSLDKSAKLWDARTLEL--------------IKTYV-TERPVNAVTMSPL--LDHVVLGGGQDASAVTTTD  262 (313)
Q Consensus       200 s~~~~~l~s~s~dg~i~iwd~~~~~~--------------~~~~~-~~~~~~~~~~~p~--~~~~~~~~~~~~~~~~~~~  262 (313)
                      +  ++++++++.|+.|++||+++++.              +..+. +...+.+++|+|+  +..+++++ .+ +.+.+  
T Consensus       240 ~--~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~-~d-g~i~v--  313 (366)
T 3k26_A          240 L--GDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFWQKMLALGN-QV-GKLYV--  313 (366)
T ss_dssp             E--TTEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCEECTTSSEEEEEC-TT-SCEEE--
T ss_pred             c--CCEEEEEecCCEEEEEeCCCccccccccccCCcchheeccccccCCcEEEEEEcCCCCCcEEEEEe-cC-CcEEE--
Confidence            8  77999999999999999988643              45544 3557899999999  77766653 23 33444  


Q ss_pred             cCCCceeeeeeehhhhhhh----cccccc--ccceeEEEECCCCCeeEEE
Q 021399          263 HRAGKFEAKFFDKILQEEI----GGVKGH--FGPINALAFNPDGKRYGFL  306 (313)
Q Consensus       263 ~~~~~~~~~~~~~~~~~~~----~~~~~h--~~~V~~~~fspdgk~~~~~  306 (313)
                                ||..+++..    ..+.+|  ..+|++++|+|||+.++..
T Consensus       314 ----------wd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~  353 (366)
T 3k26_A          314 ----------WDLEVEDPHKAKCTTLTHHKCGAAIRQTSFSRDSSILIAV  353 (366)
T ss_dssp             ----------EECCSSSGGGCEEEEECCTTCCSCEEEEEECTTSSEEEEE
T ss_pred             ----------EECCCCCCccccceEEcccccCCceEEEEeCCCCCeEEEE
Confidence                      444333222    245666  7999999999999998765

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=100.00  E-value=1e-31  Score=239.86  Aligned_cols=265  Identities=23%  Similarity=0.377  Sum_probs=207.9

Q ss_pred             cccccccceeEEEEccCCCEEEEeeCCCCeEEEeCCCCcEEEEecCCCCceEEEEEC--CCCCeEEEeeCCCcEEEEECC
Q 021399            5 LMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVS--RDSMTLITGSADQTAKLWNVE   82 (313)
Q Consensus         5 ~l~~h~~~v~~~~fs~~g~~l~s~s~d~~i~iw~~~~~~~~~~~~~H~~~V~~~~~~--~~~~~l~s~s~D~~v~vWd~~   82 (313)
                      .+.+|.+.|.+++|+|++ +|++|+.|+.|++||+.+++.+..+.+|.+.|.+++|+  ++++.+++|+.|++|++||+.
T Consensus       157 ~~~~h~~~V~~l~~~~~~-~l~s~s~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~  235 (464)
T 3v7d_B          157 QLSGHDGGVWALKYAHGG-ILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLP  235 (464)
T ss_dssp             EECCCSSCEEEEEECSTT-EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECC
T ss_pred             EEeCCCcCEEEEEEcCCC-EEEEEeCCCCEEEEECCCCcEEEEECCCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCC
Confidence            577999999999999988 99999999999999999999999999999999999998  577899999999999999998


Q ss_pred             CCeEEEE-----------------------e-cCCCCeeEEEeec-CCeEEEEECCCceeccccceeeeeeeCCCCCCCc
Q 021399           83 TGAQLFT-----------------------F-NFDSPARSVDFAV-GDKLAVITTDPFMELNSAIHVKRIARDPADQGGE  137 (313)
Q Consensus        83 ~~~~~~~-----------------------~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  137 (313)
                      ++.....                       . .+...+..+  .+ +..++.+..+.      .+.++++      ..+.
T Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~~~~~l~~~~~d~------~i~vwd~------~~~~  301 (464)
T 3v7d_B          236 KESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTV--SGHGNIVVSGSYDN------TLIVWDV------AQMK  301 (464)
T ss_dssp             CCCCC------CCSSEEESCGGGCTTEEEEECCCSSCEEEE--EEETTEEEEEETTS------CEEEEET------TTTE
T ss_pred             CCcccccccccCCcceEeeccCCCeEEEEEccCccceEEEE--cCCCCEEEEEeCCC------eEEEEEC------CCCc
Confidence            7653211                       1 111222222  22 23333333332      2333333      2345


Q ss_pred             eEEEecCCCCceEEEEEccCCCEEEEeeCCCeEEEEECCCCceeeecccccCceeceEEEEECCCCCEEEEeeCCCcEEE
Q 021399          138 SVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKL  217 (313)
Q Consensus       138 ~~~~~~~~~~~i~~~~~~~~~~~i~t~~~d~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~dg~i~i  217 (313)
                      .+..+.+|...|.++.|+|+++.+++|+.|+.|++||+.+++++..+.   +|...|.+++++  +++|++++.||.|++
T Consensus       302 ~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~---~h~~~v~~~~~~--~~~l~s~s~dg~v~v  376 (464)
T 3v7d_B          302 CLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQ---GHTALVGLLRLS--DKFLVSAAADGSIRG  376 (464)
T ss_dssp             EEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEEC---CCSSCEEEEEEC--SSEEEEEETTSEEEE
T ss_pred             EEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEe---CCCCcEEEEEEc--CCEEEEEeCCCcEEE
Confidence            677788999999999999999999999999999999999998877654   688999999997  579999999999999


Q ss_pred             EECCCCcEEEEEecCCceeEEEeccCCCEEEEcccccCceeEeeccCCCceeeeeeehhhhhhhcc-ccccccceeEEEE
Q 021399          218 WDARTLELIKTYVTERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGG-VKGHFGPINALAF  296 (313)
Q Consensus       218 wd~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~h~~~V~~~~f  296 (313)
                      ||+++++..........+..++|+|++..+++++  + +.            +++||..+++.+.. +.+|.++|++++|
T Consensus       377 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--d-g~------------i~iwd~~~g~~~~~~~~~~~~~v~~v~~  441 (464)
T 3v7d_B          377 WDANDYSRKFSYHHTNLSAITTFYVSDNILVSGS--E-NQ------------FNIYNLRSGKLVHANILKDADQIWSVNF  441 (464)
T ss_dssp             EETTTCCEEEEEECTTCCCEEEEEECSSEEEEEE--T-TE------------EEEEETTTCCEEESCTTTTCSEEEEEEE
T ss_pred             EECCCCceeeeecCCCCccEEEEEeCCCEEEEec--C-Ce------------EEEEECCCCcEEehhhccCCCcEEEEEe
Confidence            9999998888777777888999999988766653  2 22            45666666666554 5678999999999


Q ss_pred             CCCCCeeEEE
Q 021399          297 NPDGKRYGFL  306 (313)
Q Consensus       297 spdgk~~~~~  306 (313)
                      +  ++.++..
T Consensus       442 ~--~~~l~~~  449 (464)
T 3v7d_B          442 K--GKTLVAA  449 (464)
T ss_dssp             E--TTEEEEE
T ss_pred             c--CCEEEEE
Confidence            7  4554443

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=100.00  E-value=1.5e-32  Score=236.85  Aligned_cols=272  Identities=18%  Similarity=0.287  Sum_probs=204.4

Q ss_pred             cccccccceeEEEEccC---CCEEEEeeCCCCeEEEeCCC-CcEE-EEecCCCCceEEEEECCCCCeEEEeeCCCcEEEE
Q 021399            5 LMKGHERPLTYLKYNKD---GDLLFSCAKDHTPTVWFADN-GERL-GTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLW   79 (313)
Q Consensus         5 ~l~~h~~~v~~~~fs~~---g~~l~s~s~d~~i~iw~~~~-~~~~-~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~v~vW   79 (313)
                      ++.+|.+.|.+++|+|+   |++|++|+.|+.|+|||+.+ +..+ ..+.+|.+.|.+++|+|++++|++++.|++|++|
T Consensus        34 ~~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw  113 (368)
T 3mmy_A           34 VTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKMW  113 (368)
T ss_dssp             CSSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEEEEEECSSCEEEEEECTTSSEEEEEETTSEEEEE
T ss_pred             eccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeEEEeccccCCEEEEEECcCCCEEEEEcCCCcEEEE
Confidence            67899999999999999   69999999999999999997 5554 7889999999999999999999999999999999


Q ss_pred             ECCCCeEEEEecCCCCeeEEEe--ecCCeEEEE-ECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEcc
Q 021399           80 NVETGAQLFTFNFDSPARSVDF--AVGDKLAVI-TTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGP  156 (313)
Q Consensus        80 d~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~  156 (313)
                      |+++++.+....+..++..+.|  .+++..++. ..+..      +.++++..      +..+..+..+. .+..+.+. 
T Consensus       114 d~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~------i~vwd~~~------~~~~~~~~~~~-~~~~~~~~-  179 (368)
T 3mmy_A          114 DLSSNQAIQIAQHDAPVKTIHWIKAPNYSCVMTGSWDKT------LKFWDTRS------SNPMMVLQLPE-RCYCADVI-  179 (368)
T ss_dssp             ETTTTEEEEEEECSSCEEEEEEEECSSCEEEEEEETTSE------EEEECSSC------SSCSEEEECSS-CEEEEEEE-
T ss_pred             EcCCCCceeeccccCceEEEEEEeCCCCCEEEEccCCCc------EEEEECCC------CcEEEEEecCC-CceEEEec-
Confidence            9999998887778888999999  666654444 33332      33333321      22333344333 44444444 


Q ss_pred             CCCEEEEeeCCCeEEEEECCCCcee-eecccccCceeceEEEEECCCCCE----EEEeeCCCcEEEEECCCC---cEEEE
Q 021399          157 LNRTIISAGEDAIVRIWDTETGKLL-KESDKETGHKKTITSLAKAADGSH----FLTGSLDKSAKLWDARTL---ELIKT  228 (313)
Q Consensus       157 ~~~~i~t~~~d~~i~lwd~~~~~~~-~~~~~~~~h~~~v~~~~~s~~~~~----l~s~s~dg~i~iwd~~~~---~~~~~  228 (313)
                       ...+++++.++.+++||+...... ......  +...+.++++.++...    +++++.||.|++||++..   ..+..
T Consensus       180 -~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~  256 (368)
T 3mmy_A          180 -YPMAVVATAERGLIVYQLENQPSEFRRIESP--LKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPAKDNFT  256 (368)
T ss_dssp             -TTEEEEEEGGGCEEEEECSSSCEEEEECCCS--CSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSCSCHHHHSEE
T ss_pred             -CCeeEEEeCCCcEEEEEeccccchhhhcccc--ccCCCceEEEcccCCCCCCeEEEecCCCcEEEEecCCCCcccccee
Confidence             457888999999999999765432 222222  3334455544444433    999999999999999987   44445


Q ss_pred             EecCC-------------ceeEEEeccCCCEEEEcccccCceeEeeccCCCceeeeeeehhhhhhhccccccccceeEEE
Q 021399          229 YVTER-------------PVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALA  295 (313)
Q Consensus       229 ~~~~~-------------~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~  295 (313)
                      +....             .+.+++|+|++..+++++. |+             .+++||..+++.+..+.+|..+|++++
T Consensus       257 ~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~-dg-------------~i~iwd~~~~~~~~~~~~~~~~v~~~~  322 (368)
T 3mmy_A          257 FKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGS-DG-------------RFSFWDKDARTKLKTSEQLDQPISACC  322 (368)
T ss_dssp             EECSEEC----CCCEEECCEEEEEECTTTCCEEEEET-TS-------------CEEEEETTTTEEEEECCCCSSCEEEEE
T ss_pred             eeeeecccccccccccccceEEEEEecCCCEEEEEcc-CC-------------eEEEEECCCCcEEEEecCCCCCceEEE
Confidence            44322             5999999999988776543 32             356777777777788889999999999


Q ss_pred             ECCCCCeeEEEE
Q 021399          296 FNPDGKRYGFLL  307 (313)
Q Consensus       296 fspdgk~~~~~~  307 (313)
                      |+|||+.++..-
T Consensus       323 ~s~~g~~l~~~s  334 (368)
T 3mmy_A          323 FNHNGNIFAYAS  334 (368)
T ss_dssp             ECTTSSCEEEEE
T ss_pred             ECCCCCeEEEEe
Confidence            999999988764

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=100.00  E-value=7e-33  Score=236.31  Aligned_cols=269  Identities=16%  Similarity=0.196  Sum_probs=210.7

Q ss_pred             cccceeEEEEccCCCEEEEeeCCCCeEEEeCCCCcEEEEecCCCCceEEEEECCCCCeEEEeeCCCcEEEEECCCCeEE-
Q 021399            9 HERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQL-   87 (313)
Q Consensus         9 h~~~v~~~~fs~~g~~l~s~s~d~~i~iw~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~v~vWd~~~~~~~-   87 (313)
                      |.++|.+++|+|||++++.+..++.+.+|............+|.+.|.+++|+|+++++++++ |+.|++||+.+++.. 
T Consensus         8 ~~~~v~~~~~s~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~-dg~i~iw~~~~~~~~~   86 (337)
T 1gxr_A            8 GSKPAYSFHVTADGQMQPVPFPPDALIGPGIPRHARQINTLNHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKS   86 (337)
T ss_dssp             EEEECCEEEECSSSCEEECCCCTTSSSSTTCCSEEEEEEEECCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCS
T ss_pred             cCCceeEEEECCCCCEEEeecCCCcEeccccCCccccceeccCCCceEEEEEecCCcEEEEcC-CCeEEEEECCCCCcee
Confidence            567899999999999999998888887776655555555568999999999999999999998 999999999875422 


Q ss_pred             --EEe---cCCCCeeEEEeecCCeEEEEE-CCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEccCCCEE
Q 021399           88 --FTF---NFDSPARSVDFAVGDKLAVIT-TDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTI  161 (313)
Q Consensus        88 --~~~---~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i  161 (313)
                        ...   .....+..+.|.+++..++.. .+.      .+.++++..    ........+..|...+..+.|+|+++++
T Consensus        87 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~------~i~~~d~~~----~~~~~~~~~~~~~~~i~~~~~~~~~~~l  156 (337)
T 1gxr_A           87 PVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEAS------TLSIWDLAA----PTPRIKAELTSSAPACYALAISPDSKVC  156 (337)
T ss_dssp             CSEEEECSCTTSBEEEEEECTTSSEEEEEESSS------EEEEEECCC----C--EEEEEEECSSSCEEEEEECTTSSEE
T ss_pred             eeecccccCCCCcEEEEEEcCCCCEEEEEcCCC------cEEEEECCC----CCcceeeecccCCCceEEEEECCCCCEE
Confidence              221   345678889999877655443 332      233333321    1122455677888999999999999999


Q ss_pred             EEeeCCCeEEEEECCCCceeeecccccCceeceEEEEECCCCCEEEEeeCCCcEEEEECCCCcEEEEEecCCceeEEEec
Q 021399          162 ISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTERPVNAVTMS  241 (313)
Q Consensus       162 ~t~~~d~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~  241 (313)
                      ++++.|+.|++||+++++.+..+.   .|...+.+++|+|++++|++++.|+.|++||+++++++..+.....+.+++|+
T Consensus       157 ~~~~~dg~v~~~d~~~~~~~~~~~---~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~v~~~~~s  233 (337)
T 1gxr_A          157 FSCCSDGNIAVWDLHNQTLVRQFQ---GHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHDFTSQIFSLGYC  233 (337)
T ss_dssp             EEEETTSCEEEEETTTTEEEEEEC---CCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEEC
T ss_pred             EEEeCCCcEEEEeCCCCceeeeee---cccCceEEEEECCCCCEEEEEecCCcEEEEECCCCceEeeecCCCceEEEEEC
Confidence            999999999999999888776553   58889999999999999999999999999999999999888888889999999


Q ss_pred             cCCCEEEEcccccCceeEeeccCCCceeeeeeehhhhhhhccccccccceeEEEECCCCCeeEEE
Q 021399          242 PLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKRYGFL  306 (313)
Q Consensus       242 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~fspdgk~~~~~  306 (313)
                      |++..+++++.+  ..+.            +||....+. ..+..|..+|.+++|+|||++++..
T Consensus       234 ~~~~~l~~~~~~--~~i~------------~~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~l~~~  283 (337)
T 1gxr_A          234 PTGEWLAVGMES--SNVE------------VLHVNKPDK-YQLHLHESCVLSLKFAYCGKWFVST  283 (337)
T ss_dssp             TTSSEEEEEETT--SCEE------------EEETTSSCE-EEECCCSSCEEEEEECTTSSEEEEE
T ss_pred             CCCCEEEEEcCC--CcEE------------EEECCCCCe-EEEcCCccceeEEEECCCCCEEEEe
Confidence            999988766432  2343            444433222 2456799999999999999987754

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.6e-32  Score=233.38  Aligned_cols=234  Identities=18%  Similarity=0.271  Sum_probs=171.3

Q ss_pred             ccccceeEEEEccCCCEEEEeeCCCCeEEEeCCC-------CcEEEEecCCCCceEEEEECCCCCeEEEeeCCCcEEEEE
Q 021399            8 GHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADN-------GERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWN   80 (313)
Q Consensus         8 ~h~~~v~~~~fs~~g~~l~s~s~d~~i~iw~~~~-------~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~v~vWd   80 (313)
                      +|.+.|.+++|+|++++|++|+.|+.|+|||...       .+.+..+.+|.+.|.+++|+|++++|+||+.|++|++||
T Consensus        56 ~h~~~v~~v~~sp~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~~las~s~D~~v~iwd  135 (330)
T 2hes_X           56 AHKKAIRSVAWRPHTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWE  135 (330)
T ss_dssp             CCCSCEEEEEECTTSSEEEEEETTSCEEEEEC-------CCCEEEEEEC----CEEEEEECTTSCEEEEEETTSCEEEEE
T ss_pred             CccCCEEEEEECCCCCEEEEEeCCCcEEEEEcccCcCccccceeEEEEcCCCCcEEEEEECCCCCEEEEEeCCCEEEEEe
Confidence            3999999999999999999999999999999853       356778999999999999999999999999999999999


Q ss_pred             CCCC----eEEEEec-CCCCeeEEEeecCCeEEEE-ECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEE
Q 021399           81 VETG----AQLFTFN-FDSPARSVDFAVGDKLAVI-TTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVW  154 (313)
Q Consensus        81 ~~~~----~~~~~~~-~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~  154 (313)
                      +...    +++..+. +...+..+.|+|++..++. +.+.      .+++|+....    ....+..+.+|.+.|.++.|
T Consensus       136 ~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~------~i~iW~~~~~----~~~~~~~~~~h~~~v~~~~~  205 (330)
T 2hes_X          136 TDESGEEYECISVLQEHSQDVKHVIWHPSEALLASSSYDD------TVRIWKDYDD----DWECVAVLNGHEGTVWSSDF  205 (330)
T ss_dssp             CCTTCCCCEEEEEECCCSSCEEEEEECSSSSEEEEEETTS------CEEEEEEETT----EEEEEEEECCCSSCEEEEEE
T ss_pred             ccCCCCCeEEEEEeccCCCceEEEEECCCCCEEEEEcCCC------eEEEEECCCC----CeeEEEEccCCCCcEEEEEe
Confidence            9432    3444443 4567889999987655544 3333      3344443211    12356678899999999999


Q ss_pred             ccC--CCEEEEeeCCCeEEEEECCCC--------ceeeecccccCceeceEEEEECCCCCEEEEeeCCCcEEEEECCCCc
Q 021399          155 GPL--NRTIISAGEDAIVRIWDTETG--------KLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLE  224 (313)
Q Consensus       155 ~~~--~~~i~t~~~d~~i~lwd~~~~--------~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~  224 (313)
                      +|+  +..+++|+.|++|++||+..+        .+...+  ...|...|.+++|++++ +|++++.||+|++||.++++
T Consensus       206 ~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~~~~--~~~h~~~v~~v~~s~~~-~l~s~~~dg~v~iw~~~~~~  282 (330)
T 2hes_X          206 DKTEGVFRLCSGSDDSTVRVWKYMGDDEDDQQEWVCEAIL--PDVHKRQVYNVAWGFNG-LIASVGADGVLAVYEEVDGE  282 (330)
T ss_dssp             CCSSSSCEEEEEETTSCEEEEEEEEECTTSCEEEEEEEEC--CSCCSSCEEEEEECTTS-CEEEEETTSCEEEEEEETTE
T ss_pred             cCCCCeeEEEEEeCCCeEEEEEecCCCccccceeEEeeec--ccccccceEEEEEcCCC-EEEEEeCCCEEEEEEcCCCc
Confidence            998  678999999999999998653        122221  12388899999999765 89999999999999998774


Q ss_pred             --EEEEE-e-cCC-ceeEEEeccC--CCEEEEcccccC
Q 021399          225 --LIKTY-V-TER-PVNAVTMSPL--LDHVVLGGGQDA  255 (313)
Q Consensus       225 --~~~~~-~-~~~-~~~~~~~~p~--~~~~~~~~~~~~  255 (313)
                        ++... . +.. .+.+++|+|.  +..+ ++++.|+
T Consensus       283 ~~~~~~~~~~h~~~~v~~v~~~~~~~~~~l-as~s~Dg  319 (330)
T 2hes_X          283 WKVFAKRALCHGVYEINVVKWLELNGKTIL-ATGGDDG  319 (330)
T ss_dssp             EEEEEEESCTTTTSCEEEEEEC-----CCE-EEEETTS
T ss_pred             eEEEeccccccccceEEEEEEecCCCceEE-EEecCCC
Confidence              33333 2 333 7899999994  4444 4444443

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=100.00  E-value=6.1e-32  Score=248.87  Aligned_cols=285  Identities=14%  Similarity=0.125  Sum_probs=204.0

Q ss_pred             ccccccccceeEEEEccCCC-EEEEeeCCCCeEEEeCCCCcEEEEecCCCC---ceEEEEECCC-CCeEEEeeCCCcEEE
Q 021399            4 ILMKGHERPLTYLKYNKDGD-LLFSCAKDHTPTVWFADNGERLGTYRGHNG---AVWCCDVSRD-SMTLITGSADQTAKL   78 (313)
Q Consensus         4 ~~l~~h~~~v~~~~fs~~g~-~l~s~s~d~~i~iw~~~~~~~~~~~~~H~~---~V~~~~~~~~-~~~l~s~s~D~~v~v   78 (313)
                      ..+.+|...|.+++|+|+++ +|++++.|+.|++||..+++.+.++.+|..   .|.+++|+|+ ++++++++.|+.|++
T Consensus       154 ~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~v  233 (615)
T 1pgu_A          154 GEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISC  233 (615)
T ss_dssp             EECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEE
T ss_pred             eeeecCCccEEEEEECCCCCcEEEEEeCCCcEEEEeCCCcceeeeecccCCCCceEEEEEECCCCCCEEEEEeCCCeEEE
Confidence            35778999999999999998 899999999999999999999999999999   9999999999 999999999999999


Q ss_pred             EECCCCeEEEEe-----cCCCCeeEEEeecCCeEEEEECCCceeccccc---eeeeeeeCC-------------------
Q 021399           79 WNVETGAQLFTF-----NFDSPARSVDFAVGDKLAVITTDPFMELNSAI---HVKRIARDP-------------------  131 (313)
Q Consensus        79 Wd~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~-------------------  131 (313)
                      ||+.+++.+..+     .+..++..+.|..+..++....+....++...   ....+....                   
T Consensus       234 wd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  313 (615)
T 1pgu_A          234 FDGKSGEFLKYIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRII  313 (615)
T ss_dssp             EETTTCCEEEECCBTTBCCCSCEEEEEESSSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCGGGCEEEEEEEETTEEE
T ss_pred             EECCCCCEeEEecccccccCCceEEEEEcCCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcccCceeEEEeCCCCeEE
Confidence            999999988887     55677888888833334444444322211110   000000000                   


Q ss_pred             ---C--------CCCCceEEEecCCCCc---------------------------------eEEEEEccC----------
Q 021399          132 ---A--------DQGGESVLILKGPQGR---------------------------------INRAVWGPL----------  157 (313)
Q Consensus       132 ---~--------~~~~~~~~~~~~~~~~---------------------------------i~~~~~~~~----------  157 (313)
                         .        ...+..+..+.+|.+.                                 |.++.| +.          
T Consensus       314 ~~~~~g~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~v~~~~~-~~~~~l~~~~~d  392 (615)
T 1pgu_A          314 SLSLDGTLNFYELGHDEVLKTISGHNKGITALTVNPLISGSYDGRIMEWSSSSMHQDHSNLIVSLDN-SKAQEYSSISWD  392 (615)
T ss_dssp             EEETTSCEEEEETTEEEEEEEECCCSSCEEEEETTTTEEEETTSCEEETTTTEEECCCCSCEEEEEC-CSTTCCEEEETT
T ss_pred             EEECCCCEEEEECCCCcEEEEEeCCCCCEEEEEecCcEEECCCCeEEEEEchhhcCcccCceEEEEE-CCCcEEEEEeCC
Confidence               0        0001112222233222                                 222222 11          


Q ss_pred             ---------------------------------------------------------------CCEEEEeeC-CCeEEEE
Q 021399          158 ---------------------------------------------------------------NRTIISAGE-DAIVRIW  173 (313)
Q Consensus       158 ---------------------------------------------------------------~~~i~t~~~-d~~i~lw  173 (313)
                                                                                     ++++++++. |+.|++|
T Consensus       393 ~~i~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~d~~i~~~  472 (615)
T 1pgu_A          393 DTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRLNSPGSAVSLSQNYVAVGLEEGNTIQVF  472 (615)
T ss_dssp             TEEEETTEEEEECSSCEEEEEECSSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEEEEEECSSEEEEEETTTSCEEEE
T ss_pred             CCEEEEEcccCcccCCceEEEEcCCCCEEEEeCCCceEEEeccCCceeeecccCCCceEEEEcCCEEEEeecCCCeEEEE
Confidence                                                                           444555555 6666666


Q ss_pred             ECCCCceeeecccccCceeceEEEEECCCCCEEEEeeCCCcEEEEECCCCcEEEEEe--cCCceeEEEecc---------
Q 021399          174 DTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYV--TERPVNAVTMSP---------  242 (313)
Q Consensus       174 d~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~--~~~~~~~~~~~p---------  242 (313)
                      |+.+++...  ....+|...|++++|+|++.+|++++.||.|++||+++++++..+.  +...+.+++|+|         
T Consensus       473 ~~~~~~~~~--~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~~~  550 (615)
T 1pgu_A          473 KLSDLEVSF--DLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEE  550 (615)
T ss_dssp             ETTEEEEEE--ECSSCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEECCSCCCSSCEEEEEECCCC------C
T ss_pred             ECCCccccc--cccCCccCceEEEEECCCCCEEEEcCCCCeEEEeeCCCCcceeEeecCCCCceeEEEEcCccccccccc
Confidence            665544321  2234688899999999999999999999999999999999988875  667899999999         


Q ss_pred             -CCCEEEEcccccCceeEeeccCCCceeeeeeehhhh-hhhccccccccceeEEEECCCCCeeEEE
Q 021399          243 -LLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQ-EEIGGVKGHFGPINALAFNPDGKRYGFL  306 (313)
Q Consensus       243 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~h~~~V~~~~fspdgk~~~~~  306 (313)
                       ++..+++++. |+             .+++||..++ +.+..+.+|.+.|++++|+|||+ ++..
T Consensus       551 ~~~~~l~~~~~-dg-------------~i~iw~~~~~~~~~~~~~~h~~~v~~l~~s~~~~-l~s~  601 (615)
T 1pgu_A          551 IEEDLVATGSL-DT-------------NIFIYSVKRPMKIIKALNAHKDGVNNLLWETPST-LVSS  601 (615)
T ss_dssp             CSCCEEEEEET-TS-------------CEEEEESSCTTCCEEETTSSTTCEEEEEEEETTE-EEEE
T ss_pred             cCCCEEEEEcC-CC-------------cEEEEECCCCceechhhhcCccceEEEEEcCCCC-eEEe
Confidence             8877666543 32             2456666554 55667889999999999999999 6543

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=100.00  E-value=8.7e-32  Score=240.26  Aligned_cols=272  Identities=21%  Similarity=0.329  Sum_probs=207.5

Q ss_pred             ccccccccce-eEEEEccCCCEEEEeeCCCCeEEEeCCCCcEEEEecCCCCceEEEEECCCCCeEEEeeCCCcEEEEECC
Q 021399            4 ILMKGHERPL-TYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVE   82 (313)
Q Consensus         4 ~~l~~h~~~v-~~~~fs~~g~~l~s~s~d~~i~iw~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~v~vWd~~   82 (313)
                      ..+++|...+ .++.|  ++++|++|+.||.|++||+.+++.+.++.+|.+.|++++|+|++ .+++|+.||+|++||++
T Consensus       115 ~~l~~h~~~v~~~~~~--~~~~l~sgs~dg~i~vwd~~~~~~~~~~~~h~~~V~~l~~~~~~-~l~s~s~dg~i~vwd~~  191 (464)
T 3v7d_B          115 TTLRGHMTSVITCLQF--EDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGG-ILVSGSTDRTVRVWDIK  191 (464)
T ss_dssp             EEEECCSSSCEEEEEE--ETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECSTT-EEEEEETTSCEEEEETT
T ss_pred             EEEcCCCCCcEEEEEE--CCCEEEEEcCCCcEEEEECCCCcEEEEEeCCCcCEEEEEEcCCC-EEEEEeCCCCEEEEECC
Confidence            3788999986 56655  57899999999999999999999999999999999999999987 89999999999999999


Q ss_pred             CCeEEEEec-CCCCeeEEEeec--CCe-EEEEECCCceeccccceeeeeeeCCCC-----------------CCCceEEE
Q 021399           83 TGAQLFTFN-FDSPARSVDFAV--GDK-LAVITTDPFMELNSAIHVKRIARDPAD-----------------QGGESVLI  141 (313)
Q Consensus        83 ~~~~~~~~~-~~~~~~~~~~~~--~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~  141 (313)
                      +++.+..+. +..++..+.+.+  +.. ++.+..+...      .++++......                 .....+..
T Consensus       192 ~~~~~~~~~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i------~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  265 (464)
T 3v7d_B          192 KGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTL------HVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGV  265 (464)
T ss_dssp             TTEEEEEECCCSSCEEEEEEEESSSCEEEEEEETTSCE------EEEECCCCCCC------CCSSEEESCGGGCTTEEEE
T ss_pred             CCcEEEEECCCCCccEEEEEecCCCCCEEEEEcCCCcE------EEeeCCCCcccccccccCCcceEeeccCCCeEEEEE
Confidence            998887775 567888888874  434 4444444332      23332211100                 01113556


Q ss_pred             ecCCCCceEEEEEccCCCEEEEeeCCCeEEEEECCCCceeeecccccCceeceEEEEECCCCCEEEEeeCCCcEEEEECC
Q 021399          142 LKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDAR  221 (313)
Q Consensus       142 ~~~~~~~i~~~~~~~~~~~i~t~~~d~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~dg~i~iwd~~  221 (313)
                      +.+|...+..+  +++++++++++.|+.|++||+.+++++..+.   +|...|.+++|+|+++++++|+.||.|++||++
T Consensus       266 ~~~~~~~v~~~--~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~---~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~  340 (464)
T 3v7d_B          266 LRGHMASVRTV--SGHGNIVVSGSYDNTLIVWDVAQMKCLYILS---GHTDRIYSTIYDHERKRCISASMDTTIRIWDLE  340 (464)
T ss_dssp             ECCCSSCEEEE--EEETTEEEEEETTSCEEEEETTTTEEEEEEC---CCSSCEEEEEEETTTTEEEEEETTSCEEEEETT
T ss_pred             ccCccceEEEE--cCCCCEEEEEeCCCeEEEEECCCCcEEEEec---CCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECC
Confidence            77888888766  6778899999999999999999988776653   688999999999999999999999999999999


Q ss_pred             CCcEEEEEe-cCCceeEEEeccCCCEEEEcccccCceeEeeccCCCceeeeeeehhhhhhhccccccccceeEEEECCCC
Q 021399          222 TLELIKTYV-TERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDG  300 (313)
Q Consensus       222 ~~~~~~~~~-~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~fspdg  300 (313)
                      +++++.++. +...+.++++++  ..+++ ++.|+ .+.            +||..+....... .|...+..++|+|++
T Consensus       341 ~~~~~~~~~~h~~~v~~~~~~~--~~l~s-~s~dg-~v~------------vwd~~~~~~~~~~-~~~~~~~~~~~~~~~  403 (464)
T 3v7d_B          341 NGELMYTLQGHTALVGLLRLSD--KFLVS-AAADG-SIR------------GWDANDYSRKFSY-HHTNLSAITTFYVSD  403 (464)
T ss_dssp             TTEEEEEECCCSSCEEEEEECS--SEEEE-EETTS-EEE------------EEETTTCCEEEEE-ECTTCCCEEEEEECS
T ss_pred             CCcEEEEEeCCCCcEEEEEEcC--CEEEE-EeCCC-cEE------------EEECCCCceeeee-cCCCCccEEEEEeCC
Confidence            999998885 466789999874  45444 34332 344            4444333322222 366788889999999


Q ss_pred             CeeEEE
Q 021399          301 KRYGFL  306 (313)
Q Consensus       301 k~~~~~  306 (313)
                      +.++..
T Consensus       404 ~~l~~~  409 (464)
T 3v7d_B          404 NILVSG  409 (464)
T ss_dssp             SEEEEE
T ss_pred             CEEEEe
Confidence            987653

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=100.00  E-value=2.1e-32  Score=240.96  Aligned_cols=276  Identities=12%  Similarity=0.146  Sum_probs=201.0

Q ss_pred             cccccccceeEEEEccCCCEEEEeeCCCCeEEEeCCCCcEEEEecCCCCceEEEEECCCCCeEEEeeCCCcEEEEECCCC
Q 021399            5 LMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETG   84 (313)
Q Consensus         5 ~l~~h~~~v~~~~fs~~g~~l~s~s~d~~i~iw~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~v~vWd~~~~   84 (313)
                      .+..| ..+....|+|++++|++|+.|+.|++||+.+++....+.+|.+.|.+++|+|++++|++|+.|++|++||+.++
T Consensus        93 ~~~~~-~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~  171 (420)
T 3vl1_A           93 MLKRA-DYTAVDTAKLQMRRFILGTTEGDIKVLDSNFNLQREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDG  171 (420)
T ss_dssp             TSCSC-CEEEEEEECSSSCEEEEEETTSCEEEECTTSCEEEEETTSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTC
T ss_pred             EEecC-CceEEEEEecCCCEEEEEECCCCEEEEeCCCcceeeecccccCccEEEEECCCCCEEEEEeCCCeEEEEeCCCC
Confidence            44555 44556688999999999999999999999999999888999999999999999999999999999999999988


Q ss_pred             eEEEEec-CCCCeeEEEeecCCeEE-EEECCCceeccccceeeeeeeCCCCCCCceEEEecC------------------
Q 021399           85 AQLFTFN-FDSPARSVDFAVGDKLA-VITTDPFMELNSAIHVKRIARDPADQGGESVLILKG------------------  144 (313)
Q Consensus        85 ~~~~~~~-~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------  144 (313)
                      +.+..+. +...+..+.|++++..+ .+..+....+      |++.      .+..+..+..                  
T Consensus       172 ~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~i------wd~~------~~~~~~~~~~~~~~~~~v~~~~~~~~~~  239 (420)
T 3vl1_A          172 SNPRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRL------WECG------TGTTIHTFNRKENPHDGVNSIALFVGTD  239 (420)
T ss_dssp             CCCEEEECCSSCEEEEEEETTTTEEEEEETTSCEEE------EETT------TTEEEEEECBTTBTTCCEEEEEEEECCC
T ss_pred             cCceEEcCCCCcEEEEEEcCCCCEEEEEcCCCcEEE------eECC------CCceeEEeecCCCCCCCccEEEEecCCc
Confidence            7766654 56788999999866544 4444443322      2211      1122222221                  


Q ss_pred             ------CCCceEEEEEccCCCEEEEeeCCCeEEEEECCCCceeeecccccCceeceEEEEECCCCC-EEEEeeCCCcEEE
Q 021399          145 ------PQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGS-HFLTGSLDKSAKL  217 (313)
Q Consensus       145 ------~~~~i~~~~~~~~~~~i~t~~~d~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~-~l~s~s~dg~i~i  217 (313)
                            +...+..+.|+|+++++++++.|+.|++||+.+++.+..+.  ..|...+.+++|+|++. +|++|+.||.|++
T Consensus       240 ~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~~l~~g~~dg~i~v  317 (420)
T 3vl1_A          240 RQLHEISTSKKNNLEFGTYGKYVIAGHVSGVITVHNVFSKEQTIQLP--SKFTCSCNSLTVDGNNANYIYAGYENGMLAQ  317 (420)
T ss_dssp             SSCGGGCCCCCCTTCSSCTTEEEEEEETTSCEEEEETTTCCEEEEEC--CTTSSCEEEEEECSSCTTEEEEEETTSEEEE
T ss_pred             ceeeecccCcccceEEcCCCCEEEEEcCCCeEEEEECCCCceeEEcc--cccCCCceeEEEeCCCCCEEEEEeCCCeEEE
Confidence                  23455566678999999999999999999999887766543  35888999999999999 9999999999999


Q ss_pred             EECCCCcE-EEEEe--cCCceeEEEeccCCCEEEEcccccCceeEeeccCCCceeeeeeehhhhhhhccccccccceeEE
Q 021399          218 WDARTLEL-IKTYV--TERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINAL  294 (313)
Q Consensus       218 wd~~~~~~-~~~~~--~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~  294 (313)
                      ||+++++. +..+.  +...+.++.+ |.+..++ +++.| +.+.+|+.........+..   ......+.+|.+.|.++
T Consensus       318 wd~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~l~-s~~~d-~~v~iw~~~~~~~~~~~~~---~~~~~~~~~~~~~v~~~  391 (420)
T 3vl1_A          318 WDLRSPECPVGEFLINEGTPINNVYF-AAGALFV-SSGFD-TSIKLDIISDPESERPAIE---FETPTFLVSNDDAVSQF  391 (420)
T ss_dssp             EETTCTTSCSEEEEESTTSCEEEEEE-ETTEEEE-EETTT-EEEEEEEECCTTCCSCEEC---TTSCEEECCSSCCCCEE
T ss_pred             EEcCCCcCchhhhhccCCCCceEEEe-CCCCEEE-EecCC-ccEEEEeccCCCCCcccee---ccCccEEccCCcceEEE
Confidence            99998753 55554  4556777765 4555444 44433 3445555433211111100   11112355789999999


Q ss_pred             EECCCCC
Q 021399          295 AFNPDGK  301 (313)
Q Consensus       295 ~fspdgk  301 (313)
                      +|+||++
T Consensus       392 ~~s~~~~  398 (420)
T 3vl1_A          392 CYVSDDE  398 (420)
T ss_dssp             EEECCSS
T ss_pred             EEccCCC
Confidence            9999999

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.2e-33  Score=254.99  Aligned_cols=281  Identities=13%  Similarity=0.105  Sum_probs=192.8

Q ss_pred             cccceeEEEEccCC---------CEEEE-------------------eeCCCCeEEEeCCCCcE----EEEecCCCCceE
Q 021399            9 HERPLTYLKYNKDG---------DLLFS-------------------CAKDHTPTVWFADNGER----LGTYRGHNGAVW   56 (313)
Q Consensus         9 h~~~v~~~~fs~~g---------~~l~s-------------------~s~d~~i~iw~~~~~~~----~~~~~~H~~~V~   56 (313)
                      +.+.|++++|+|++         ++||+                   ++.|++|+||++.+++.    ..++.+|.+.|+
T Consensus       132 ~~~~V~sv~w~p~~~~~~~~~~~~~LAv~~~~~~~~~~~~~~~~laS~s~D~tI~iWd~~~~~~~~~~~~~l~~~~~~V~  211 (524)
T 2j04_B          132 VGGLVTDIAWLNIEENTDIGKDIQYLAVAVSQYMDEPLNEHLEMFDKEKHSSCIQIFKMNTSTLHCVKVQTIVHSFGEVW  211 (524)
T ss_dssp             CCC--CCCSCEEECCCCSSCSSEEEEEEEEEC------------------CEEEEEEEEETTTCCEEEEEEEEECCCSEE
T ss_pred             CCCceeEEEecccCCCCccCcCCeEEEEEEecccCCccchhhhhhccCCCCceEEEEEccCCCCCceEEEEEEecCCcEE
Confidence            56677788888775         45554                   56789999999987764    245778899999


Q ss_pred             EEEECCC------CCeEEEeeCCCcEEEEECCCCeEE-----------EEe-cCCCCeeEEEeecCCeEEEEECCCceec
Q 021399           57 CCDVSRD------SMTLITGSADQTAKLWNVETGAQL-----------FTF-NFDSPARSVDFAVGDKLAVITTDPFMEL  118 (313)
Q Consensus        57 ~~~~~~~------~~~l~s~s~D~~v~vWd~~~~~~~-----------~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~  118 (313)
                      +++|+|+      +.+|+|++.||+|++||+.+++..           ..+ .+...+.++.|+++..++.++.+..   
T Consensus       212 ~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~~~v~sv~~s~~~~lasgs~Dgt---  288 (524)
T 2j04_B          212 DLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLSLADSLITTFDFLSPTTVVCGFKNGF---  288 (524)
T ss_dssp             EEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEECCTTTCEEEEEESSSSEEEEEETTSE---
T ss_pred             EEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeecCceEEEEcCCCCEEEEEecCCCeEEEEeCCCE---
Confidence            9999996      579999999999999999765311           122 2346788899988776666655543   


Q ss_pred             cccceeeeeeeCCCCCCCceEEEecCCCCceEEE--EEccCC-CEEEEeeCCCeEEEEECCCCceeeecccccCce--ec
Q 021399          119 NSAIHVKRIARDPADQGGESVLILKGPQGRINRA--VWGPLN-RTIISAGEDAIVRIWDTETGKLLKESDKETGHK--KT  193 (313)
Q Consensus       119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~--~~~~~~-~~i~t~~~d~~i~lwd~~~~~~~~~~~~~~~h~--~~  193 (313)
                         +.+|++...     ..+...+.+|.+.|.++  .|+|++ .+|++|+.|++|+|||+++++++..+.   +|.  ..
T Consensus       289 ---V~lWD~~~~-----~~~~~~~~~H~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~~~~~~~~~---~~~~~~~  357 (524)
T 2j04_B          289 ---VAEFDLTDP-----EVPSFYDQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDIATTKTTV---SRFRGSN  357 (524)
T ss_dssp             ---EEEEETTBC-----SSCSEEEECSSSCEEEEEEECCTTSCCEEEEEETTSEEEEECGGGHHHHCEEE---EECSCCS
T ss_pred             ---EEEEECCCC-----CCceEEeecccccEEEEEEEcCCCCCeEEEEeccCCeEEEEECCCCCcccccc---cccccCc
Confidence               334443211     12334567899999998  568887 889999999999999998876544332   343  24


Q ss_pred             eEEEEECCCCCEEEEeeCCCcEEEEECCCCcEEEEEe-cCCceeEEEeccCCCEEEEcccccCceeEeeccCCCce----
Q 021399          194 ITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYV-TERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKF----  268 (313)
Q Consensus       194 v~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~-~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~----  268 (313)
                      |.+++|+|++..+++++.|++|++||++++.++.++. +...|.+++|+|++..+++++ .| ..+.+||...+.+    
T Consensus       358 v~~v~fsp~~~~l~s~~~d~tv~lwd~~~~~~~~~l~gH~~~V~sva~Sp~g~~l~Sgs-~D-gtv~lwd~~~~~~~~~~  435 (524)
T 2j04_B          358 LVPVVYCPQIYSYIYSDGASSLRAVPSRAAFAVHPLVSRETTITAIGVSRLHPMVLAGS-AD-GSLIITNAARRLLHGIK  435 (524)
T ss_dssp             CCCEEEETTTTEEEEECSSSEEEEEETTCTTCCEEEEECSSCEEEEECCSSCCBCEEEE-TT-TEEECCBSCSSTTTCC-
T ss_pred             ccceEeCCCcCeEEEeCCCCcEEEEECcccccceeeecCCCceEEEEeCCCCCeEEEEE-CC-CEEEEEechHhhccccc
Confidence            7899999999999999999999999999988866664 567899999999998766543 33 3455555321110    


Q ss_pred             ---------------------eeeeee------h-hhhhhhccccccccceeEEEECCCCC---eeEE
Q 021399          269 ---------------------EAKFFD------K-ILQEEIGGVKGHFGPINALAFNPDGK---RYGF  305 (313)
Q Consensus       269 ---------------------~~~~~~------~-~~~~~~~~~~~h~~~V~~~~fspdgk---~~~~  305 (313)
                                           .+++|+      . .++..+..+.+|.++|++|+||||++   .+|.
T Consensus       436 ~~~~~~~~~~v~~v~~sp~g~~~~~~~~~~~~~~~~~g~~~~~l~gh~~~V~~Vafsp~~~~~~~lAs  503 (524)
T 2j04_B          436 NSSATQKSLRLWKWDYSIKDDKYRIDSSYEVYPLTVNDVSKAKIDAHGINITCTKWNETSAGGKCYAF  503 (524)
T ss_dssp             -----CCCCEEEECBCCSSSCEEEECCCCCCCC-------------CCCSCCCEEECCSTTTTTEEEE
T ss_pred             cCccceeeeEEEEeccCCCCCeEEccCCceecccccCCcceeeecCCCceEEEEECCCCCCccHHHHh
Confidence                                 012222      0 13455677889999999999999975   5553

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=100.00  E-value=1.3e-33  Score=279.90  Aligned_cols=267  Identities=19%  Similarity=0.240  Sum_probs=228.2

Q ss_pred             cccceeEEEEccCCCEEEEeeCCCCeEEEeCCCCcEEEEecCCCCceEEEEECCCCCeEEEeeCCCcEEEEECCCCeEEE
Q 021399            9 HERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLF   88 (313)
Q Consensus         9 h~~~v~~~~fs~~g~~l~s~s~d~~i~iw~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~v~vWd~~~~~~~~   88 (313)
                      +...+.+++|+|+++++++|+.||.|++|+..+++....+.+|.+.|.+++|+|+++.+++++.|++|++||+.+++...
T Consensus       960 ~~~~i~~~~~sp~g~~l~~g~~~g~i~i~d~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~i~vwd~~~~~~~~ 1039 (1249)
T 3sfz_A          960 PEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGDYVF 1039 (1249)
T ss_dssp             CCSCEEEEEECTTSSEEEEEETTSCCEEEETTTTSCEEECCCCSSCCCCEEECSSSSCEEEECSSSBEEEEETTTTEEEC
T ss_pred             ccCcEEEEEEcCCCCEEEEEcCCCCEEEEEcCCCceeeecccCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCceEE
Confidence            45678999999999999999999999999999999999999999999999999999999999999999999999998876


Q ss_pred             EecCCCCeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEccCCCEEEEeeCCC
Q 021399           89 TFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDA  168 (313)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~t~~~d~  168 (313)
                      ...+...+..+.+.++..++.+..+..      +.++++.      .+.....+.+|.+.|.+++|+|+++.+++++.|+
T Consensus      1040 ~~~~~~~v~~~~~~~~~~l~~~~~dg~------v~vwd~~------~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~s~d~ 1107 (1249)
T 3sfz_A         1040 LQAHQETVKDFRLLQDSRLLSWSFDGT------VKVWNVI------TGRIERDFTCHQGTVLSCAISSDATKFSSTSADK 1107 (1249)
T ss_dssp             CBCCSSCEEEEEECSSSEEEEEESSSE------EEEEETT------TTCCCEEEECCSSCCCCEEECSSSSSCEEECCSS
T ss_pred             EecCCCcEEEEEEcCCCcEEEEECCCc------EEEEECC------CCceeEEEcccCCcEEEEEECCCCCEEEEEcCCC
Confidence            666677888999999888877766543      2333332      2344566788999999999999999999999999


Q ss_pred             eEEEEECCCCceeeecccccCceeceEEEEECCCCCEEEEeeCCCcEEEEECCCCcEEEEE----------ecCCceeEE
Q 021399          169 IVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTY----------VTERPVNAV  238 (313)
Q Consensus       169 ~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~----------~~~~~~~~~  238 (313)
                      .|++||+.+++++..+   .+|...|++++|+|+|.+|++++.||.|++||+++++++..+          .+...+.++
T Consensus      1108 ~v~iwd~~~~~~~~~l---~~h~~~v~~~~~s~dg~~lat~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~l 1184 (1249)
T 3sfz_A         1108 TAKIWSFDLLSPLHEL---KGHNGCVRCSAFSLDGILLATGDDNGEIRIWNVSDGQLLHSCAPISVEEGTATHGGWVTDV 1184 (1249)
T ss_dssp             CCCEECSSSSSCSBCC---CCCSSCEEEEEECSSSSEEEEEETTSCCCEEESSSSCCCCCCCCCC-------CCSCCCEE
T ss_pred             cEEEEECCCcceeeee---ccCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCCCceEEEeccccccccccccCceEEEE
Confidence            9999999988776554   368899999999999999999999999999999998876654          245579999


Q ss_pred             EeccCCCEEEEcccccCceeEeeccCCCceeeeeeehhhhhhhccccccccceeEEEECCCCCeeEEE
Q 021399          239 TMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKRYGFL  306 (313)
Q Consensus       239 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~fspdgk~~~~~  306 (313)
                      +|+|++..++++++                .+++||..+++.+..+.+|.++|++++|+|||+.++..
T Consensus      1185 ~fs~dg~~l~s~~g----------------~v~vwd~~~g~~~~~~~~~~~~i~~~~~s~dg~~l~~~ 1236 (1249)
T 3sfz_A         1185 CFSPDSKTLVSAGG----------------YLKWWNVATGDSSQTFYTNGTNLKKIHVSPDFRTYVTV 1236 (1249)
T ss_dssp             EECTTSSCEEEESS----------------SEEEBCSSSCBCCCCCCCSSCCCCCCEECSSSCCEEEE
T ss_pred             EECCCCCEEEECCC----------------eEEEEECCCCceeeeeeccCCcccEEEECCCCCEEEEe
Confidence            99999998877642                25677777777778888999999999999999988764

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.1e-33  Score=246.74  Aligned_cols=278  Identities=13%  Similarity=0.180  Sum_probs=207.8

Q ss_pred             cccccceeEEEEccCCC-EEEEe----------eCCCCeEEEeCCCCc---EEEEecCCCCceEEEEECCCCCeEEEeeC
Q 021399            7 KGHERPLTYLKYNKDGD-LLFSC----------AKDHTPTVWFADNGE---RLGTYRGHNGAVWCCDVSRDSMTLITGSA   72 (313)
Q Consensus         7 ~~h~~~v~~~~fs~~g~-~l~s~----------s~d~~i~iw~~~~~~---~~~~~~~H~~~V~~~~~~~~~~~l~s~s~   72 (313)
                      ..+...|.+++|+|+|+ +|++|          +.|+.|+|||+.+++   .+..+ .|...|.+++|+|++++|++++.
T Consensus         9 l~~~~~v~~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~   87 (416)
T 2pm9_A            9 LAEFSRTATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSEKPIASL-QVDSKFNDLDWSHNNKIIAGALD   87 (416)
T ss_dssp             -CEEEESCBCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGCSCSCCC-CCSSCEEEEEECSSSSCEEEEES
T ss_pred             HhhhhhcceEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCCcEEEEE-ecCCceEEEEECCCCCeEEEEcc
Confidence            34566799999999997 99999          899999999999876   33333 58999999999999999999999


Q ss_pred             CCcEEEEECCC----CeEEEEec-CCCCeeEEEeecC-CeEEE-EECCCceeccccceeeeeeeCCCCC---CCceEEEe
Q 021399           73 DQTAKLWNVET----GAQLFTFN-FDSPARSVDFAVG-DKLAV-ITTDPFMELNSAIHVKRIARDPADQ---GGESVLIL  142 (313)
Q Consensus        73 D~~v~vWd~~~----~~~~~~~~-~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~  142 (313)
                      |+.|++||+.+    .+.+..+. +...+..+.|.++ ...++ ...+..      +.++++.......   ........
T Consensus        88 dg~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~------v~iwd~~~~~~~~~~~~~~~~~~~  161 (416)
T 2pm9_A           88 NGSLELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGE------IFIWDMNKCTESPSNYTPLTPGQS  161 (416)
T ss_dssp             SSCEEEECCSSTTSCCCEEEECCCSSSCCCEEEECSSSTTBEEEECSSSC------EEBCBTTTTSSCTTTCCCBCCCCS
T ss_pred             CCeEEEeecccccccccchhhccCCccceEEEEEcCCCCCEEEEEcCCCe------EEEEECCCCccccccccccccccc
Confidence            99999999987    33554443 5668889999985 44444 333333      3333332111000   00011123


Q ss_pred             cCCCCceEEEEEccC-CCEEEEeeCCCeEEEEECCCCceeeecccc---cCceeceEEEEECCCC-CEEEEeeCCC---c
Q 021399          143 KGPQGRINRAVWGPL-NRTIISAGEDAIVRIWDTETGKLLKESDKE---TGHKKTITSLAKAADG-SHFLTGSLDK---S  214 (313)
Q Consensus       143 ~~~~~~i~~~~~~~~-~~~i~t~~~d~~i~lwd~~~~~~~~~~~~~---~~h~~~v~~~~~s~~~-~~l~s~s~dg---~  214 (313)
                      ..|...+.++.|+|+ +..+++++.|+.|++||+++++.+..+...   .+|...+.+++|+|++ .++++++.|+   .
T Consensus       162 ~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~  241 (416)
T 2pm9_A          162 MSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPS  241 (416)
T ss_dssp             CCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCC
T ss_pred             cCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCceEEEEECCCCCCEEEEEECCCCCce
Confidence            568889999999999 789999999999999999998877665432   1237889999999997 6899999999   9


Q ss_pred             EEEEECCCC-cEEEEEe--cCCceeEEEecc-CCCEEEEcccccCceeEeeccCCCceeeeeeehhhhhhhccccccccc
Q 021399          215 AKLWDARTL-ELIKTYV--TERPVNAVTMSP-LLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGP  290 (313)
Q Consensus       215 i~iwd~~~~-~~~~~~~--~~~~~~~~~~~p-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~  290 (313)
                      |++||++++ +++..+.  +...+.+++|+| ++..+++++ .|+             .+++||..+++.+..+.+|..+
T Consensus       242 i~~~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~-~dg-------------~v~~wd~~~~~~~~~~~~~~~~  307 (416)
T 2pm9_A          242 ILIWDLRNANTPLQTLNQGHQKGILSLDWCHQDEHLLLSSG-RDN-------------TVLLWNPESAEQLSQFPARGNW  307 (416)
T ss_dssp             CCEEETTSTTSCSBCCCSCCSSCEEEEEECSSCSSCEEEEE-SSS-------------EEEEECSSSCCEEEEEECSSSC
T ss_pred             EEEEeCCCCCCCcEEeecCccCceeEEEeCCCCCCeEEEEe-CCC-------------CEEEeeCCCCccceeecCCCCc
Confidence            999999986 5666655  566899999999 666655543 332             2456666666667777899999


Q ss_pred             eeEEEECCCC-CeeEE
Q 021399          291 INALAFNPDG-KRYGF  305 (313)
Q Consensus       291 V~~~~fspdg-k~~~~  305 (313)
                      |++++|+||+ +.++.
T Consensus       308 v~~~~~s~~~~~~l~s  323 (416)
T 2pm9_A          308 CFKTKFAPEAPDLFAC  323 (416)
T ss_dssp             CCCEEECTTCTTEEEE
T ss_pred             eEEEEECCCCCCEEEE
Confidence            9999999999 66654

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=100.00  E-value=5.2e-33  Score=242.29  Aligned_cols=237  Identities=21%  Similarity=0.313  Sum_probs=189.0

Q ss_pred             ccccccccceeEEEEccCCCEEEEeeCCCCeEEEeCCCCc-------EEEEecCCCCceEEEEECCCC-CeEEEeeCCCc
Q 021399            4 ILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGE-------RLGTYRGHNGAVWCCDVSRDS-MTLITGSADQT   75 (313)
Q Consensus         4 ~~l~~h~~~v~~~~fs~~g~~l~s~s~d~~i~iw~~~~~~-------~~~~~~~H~~~V~~~~~~~~~-~~l~s~s~D~~   75 (313)
                      ..+.+|...|.+++|+|+|++|++|+.|+.+++|++.+..       ....+.+|.+.|.++.|+|++ ..|+||+.|++
T Consensus       102 ~~~~~h~~~v~~~~~s~~g~~las~~~d~~v~iw~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~  181 (380)
T 3iz6_a          102 HAIKLHCPWVMECAFAPNGQSVACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQT  181 (380)
T ss_dssp             EEEECCCTTCCCCEECTTSSEEEECCSSSCCEEEECCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSC
T ss_pred             eEEecCCCCEEEEEECCCCCEEEEeeCCCcEEEEECCCCccccCCccceeeccCCCcceEEEEEecCCCCEEEEECCCCc
Confidence            3678899999999999999999999999999999987532       345688999999999999974 57999999999


Q ss_pred             EEEEECCCCeEEEEec------CCCCeeEEEeec-C-CeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCC
Q 021399           76 AKLWNVETGAQLFTFN------FDSPARSVDFAV-G-DKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQG  147 (313)
Q Consensus        76 v~vWd~~~~~~~~~~~------~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  147 (313)
                      |++||+.+++.+..+.      +...+..+.+.+ + ..++.+..+.      .+++|++.     .....+..+.+|.+
T Consensus       182 i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sgs~D~------~v~~wd~~-----~~~~~~~~~~~h~~  250 (380)
T 3iz6_a          182 CVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDT------TVRLWDLR-----ITSRAVRTYHGHEG  250 (380)
T ss_dssp             EEEECTTTCCEEEEECCCSSSSCCSCEEEEEECSSSCCEEEEEETTS------CEEEEETT-----TTCCCCEEECCCSS
T ss_pred             EEEEEcCCCcEEEEeecccCCCCccCeEEEEeecCCCCEEEEEECCC------eEEEEECC-----CCCcceEEECCcCC
Confidence            9999999998876652      234567777765 3 3444444443      33444432     12234567789999


Q ss_pred             ceEEEEEccCCCEEEEeeCCCeEEEEECCCCceeeeccccc----CceeceEEEEECCCCCEEEEeeCCCcEEEEECCCC
Q 021399          148 RINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKET----GHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTL  223 (313)
Q Consensus       148 ~i~~~~~~~~~~~i~t~~~d~~i~lwd~~~~~~~~~~~~~~----~h~~~v~~~~~s~~~~~l~s~s~dg~i~iwd~~~~  223 (313)
                      .|.++.|+|++++|++|+.|++|++||+.+++.+..+....    .+...+++++|+|+|.+|++|+.||.|++||+.++
T Consensus       251 ~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~  330 (380)
T 3iz6_a          251 DINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLA  330 (380)
T ss_dssp             CCCEEEECTTSSEEEEECSSSCEEEEETTTTEEEEEECCCCSSSCCSSCSCSEEEECSSSSEEEEECTTSCEEEEETTTC
T ss_pred             CeEEEEEecCCCeEEEEcCCCeEEEEECCCCcEEEEecccccccccccCceEEEEECCCCCEEEEEECCCCEEEEECCCC
Confidence            99999999999999999999999999999988766543221    22345899999999999999999999999999999


Q ss_pred             cEEEEEe-----cCCceeEEEeccCCCEEEEcc
Q 021399          224 ELIKTYV-----TERPVNAVTMSPLLDHVVLGG  251 (313)
Q Consensus       224 ~~~~~~~-----~~~~~~~~~~~p~~~~~~~~~  251 (313)
                      +.+..+.     +...+.+++|+|++..+++++
T Consensus       331 ~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs  363 (380)
T 3iz6_a          331 EMVLNLGTLQNSHEGRISCLGLSSDGSALCTGS  363 (380)
T ss_dssp             CEEEEECCSCSSCCCCCCEEEECSSSSEEEEEC
T ss_pred             ceEEEEecccCCCCCceEEEEECCCCCEEEEee
Confidence            8887762     456799999999999876654

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=100.00  E-value=8.8e-32  Score=247.83  Aligned_cols=279  Identities=16%  Similarity=0.199  Sum_probs=223.0

Q ss_pred             ccccccccceeEEEEccCCCEEEEeeCCCCeEEEeCCCC----cEEEEecCCCCc-eEEEEECC--CCCeEEEeeCCCcE
Q 021399            4 ILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNG----ERLGTYRGHNGA-VWCCDVSR--DSMTLITGSADQTA   76 (313)
Q Consensus         4 ~~l~~h~~~v~~~~fs~~g~~l~s~s~d~~i~iw~~~~~----~~~~~~~~H~~~-V~~~~~~~--~~~~l~s~s~D~~v   76 (313)
                      .....|.+.|.+++|+|+|++|++++ |+.|++||++++    +....+.+|.+. |.+++|+|  ++++|++++.||+|
T Consensus        12 ~~~~~~~~~v~~~~~spdg~~l~~~~-~~~v~v~~~~~~~~~~~~~~~~~~h~~~~v~~~~~sp~~~~~~l~s~~~dg~v   90 (615)
T 1pgu_A           12 PQPSTQRNFTTHLSYDPTTNAIAYPC-GKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKV   90 (615)
T ss_dssp             CCCCCCTTCCCCCEEETTTTEEEEEE-TTEEEEEECCSSCCSSCSEEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEE
T ss_pred             CCCCCccCceeEEEECCCCCEEEEec-CCeEEEEECCCCCCccccceEEecCCCceEEEEEECcCCCCCEEEEecCCCEE
Confidence            34567899999999999999999998 889999999999    889999999999 99999999  99999999999999


Q ss_pred             EEEECCCC--------eEEEEec-CCCCeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCC
Q 021399           77 KLWNVETG--------AQLFTFN-FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQG  147 (313)
Q Consensus        77 ~vWd~~~~--------~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  147 (313)
                      ++||+.++        +....+. +..++..+.|++++..++........ ...+..++        .+..+..+.+|..
T Consensus        91 ~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~-~~~v~~~d--------~~~~~~~~~~~~~  161 (615)
T 1pgu_A           91 IVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDN-FGVFISWD--------SGNSLGEVSGHSQ  161 (615)
T ss_dssp             EEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSC-SEEEEETT--------TCCEEEECCSCSS
T ss_pred             EEEeCCCCcccccccccccchhhcccccEEEEEEeCCCCEEEEeccCCCC-ccEEEEEE--------CCCcceeeecCCc
Confidence            99999754        3444443 46788999999987766554321000 01111111        2346677789999


Q ss_pred             ceEEEEEccCCC-EEEEeeCCCeEEEEECCCCceeeecccccCcee---ceEEEEECCC-CCEEEEeeCCCcEEEEECCC
Q 021399          148 RINRAVWGPLNR-TIISAGEDAIVRIWDTETGKLLKESDKETGHKK---TITSLAKAAD-GSHFLTGSLDKSAKLWDART  222 (313)
Q Consensus       148 ~i~~~~~~~~~~-~i~t~~~d~~i~lwd~~~~~~~~~~~~~~~h~~---~v~~~~~s~~-~~~l~s~s~dg~i~iwd~~~  222 (313)
                      .|..+.|+|+++ .+++++.|+.|++||..+++.+..+.   +|..   .|.+++|+|+ +++|++++.|+.|++||+++
T Consensus       162 ~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~---~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~  238 (615)
T 1pgu_A          162 RINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDR---THHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKS  238 (615)
T ss_dssp             CEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEEC---SSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTT
T ss_pred             cEEEEEECCCCCcEEEEEeCCCcEEEEeCCCcceeeeec---ccCCCCceEEEEEECCCCCCEEEEEeCCCeEEEEECCC
Confidence            999999999997 89999999999999999888776654   5777   8999999999 99999999999999999999


Q ss_pred             CcEEEEE-----ecCCceeEEEeccCCCEEEEcccccCceeEeeccCCCc------------------------------
Q 021399          223 LELIKTY-----VTERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGK------------------------------  267 (313)
Q Consensus       223 ~~~~~~~-----~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~------------------------------  267 (313)
                      ++++..+     .+...+.+++|+ ++..+++++.  ++.+.+||.+.+.                              
T Consensus       239 ~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~--d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  315 (615)
T 1pgu_A          239 GEFLKYIEDDQEPVQGGIFALSWL-DSQKFATVGA--DATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISL  315 (615)
T ss_dssp             CCEEEECCBTTBCCCSCEEEEEES-SSSEEEEEET--TSEEEEEETTTTEEEEEEECCTTCGGGCEEEEEEEETTEEEEE
T ss_pred             CCEeEEecccccccCCceEEEEEc-CCCEEEEEcC--CCcEEEEECCCCcEEEEEcCCCCcccCceeEEEeCCCCeEEEE
Confidence            9999988     566789999999 7777666543  2446666655322                              


Q ss_pred             ---eeeeeeehhhhhhhccccccccceeEEEECCC
Q 021399          268 ---FEAKFFDKILQEEIGGVKGHFGPINALAFNPD  299 (313)
Q Consensus       268 ---~~~~~~~~~~~~~~~~~~~h~~~V~~~~fspd  299 (313)
                         ..+++||..+++.+..+.+|.++|++++| |+
T Consensus       316 ~~~g~i~~~d~~~~~~~~~~~~~~~~v~~~~~-~~  349 (615)
T 1pgu_A          316 SLDGTLNFYELGHDEVLKTISGHNKGITALTV-NP  349 (615)
T ss_dssp             ETTSCEEEEETTEEEEEEEECCCSSCEEEEET-TT
T ss_pred             ECCCCEEEEECCCCcEEEEEeCCCCCEEEEEe-cC
Confidence               13566777667777778888888888888 76

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.7e-32  Score=262.75  Aligned_cols=236  Identities=13%  Similarity=0.093  Sum_probs=185.6

Q ss_pred             ccccccccceeEEEEccCCCEEEEeeCCCCeEEEeCCCCcEEEEecCCCCceEEEEECCCCCeEEEeeCCCcEEEEECCC
Q 021399            4 ILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVET   83 (313)
Q Consensus         4 ~~l~~h~~~v~~~~fs~~g~~l~s~s~d~~i~iw~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~v~vWd~~~   83 (313)
                      ....+|...|.+++|+|++++||+|+.||.|+||+..+.+....+ .|...|.+++|+| +++|++++.|++|++||+.+
T Consensus        11 ~~~~gh~~~V~~lafspdg~~lAsgs~Dg~I~lw~~~~~~~~~~~-~~~~~V~~l~fsp-g~~L~S~s~D~~v~lWd~~~   88 (902)
T 2oaj_A           11 TNKYGMSSKPIAAAFDFTQNLLAIATVTGEVHIYGQQQVEVVIKL-EDRSAIKEMRFVK-GIYLVVINAKDTVYVLSLYS   88 (902)
T ss_dssp             EEEEECSSCEEEEEEETTTTEEEEEETTSEEEEECSTTCEEEEEC-SSCCCEEEEEEET-TTEEEEEETTCEEEEEETTT
T ss_pred             ccccCCCCCcEEEEECCCCCEEEEEeCCCEEEEEeCCCcEEEEEc-CCCCCEEEEEEcC-CCEEEEEECcCeEEEEECCC
Confidence            456789999999999999999999999999999999887766554 4788999999999 88999999999999999999


Q ss_pred             CeEEEEecCCCCeeEEEeecCCeEEEEE-CCCceeccccceeeeeeeCCCCCCCceE-----------EEecCCCCceEE
Q 021399           84 GAQLFTFNFDSPARSVDFAVGDKLAVIT-TDPFMELNSAIHVKRIARDPADQGGESV-----------LILKGPQGRINR  151 (313)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~i~~  151 (313)
                      ++.+..+.....+.++.|+|+...++.. .+..      +.+|++..      ....           ....+|.+.|.+
T Consensus        89 ~~~~~~~~~~~~V~~v~~sp~g~~l~sgs~dg~------V~lwd~~~------~~~~~~~i~~~~~~~~~~~~h~~~V~s  156 (902)
T 2oaj_A           89 QKVLTTVFVPGKITSIDTDASLDWMLIGLQNGS------MIVYDIDR------DQLSSFKLDNLQKSSFFPAARLSPIVS  156 (902)
T ss_dssp             CSEEEEEECSSCEEEEECCTTCSEEEEEETTSC------EEEEETTT------TEEEEEEECCHHHHHTCSSSCCCCCCE
T ss_pred             CcEEEEEcCCCCEEEEEECCCCCEEEEEcCCCc------EEEEECCC------CccccceeccccccccccccCCCCeEE
Confidence            9888777777788999999876655543 3332      33333211      1110           123578899999


Q ss_pred             EEEccC-CCEEEEeeCCCeEEEEECCCCceeeecccc---------------cCceeceEEEEECCCCCEEEEeeCCCcE
Q 021399          152 AVWGPL-NRTIISAGEDAIVRIWDTETGKLLKESDKE---------------TGHKKTITSLAKAADGSHFLTGSLDKSA  215 (313)
Q Consensus       152 ~~~~~~-~~~i~t~~~d~~i~lwd~~~~~~~~~~~~~---------------~~h~~~v~~~~~s~~~~~l~s~s~dg~i  215 (313)
                      ++|+|. +..+++|+.|+.| +||++++++++.+...               ..|...|++++|+|+|.+|++|+.||+|
T Consensus       157 l~~sp~~~~~l~~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~lasgs~Dg~i  235 (902)
T 2oaj_A          157 IQWNPRDIGTVLISYEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITIHEDNSL  235 (902)
T ss_dssp             EEEETTEEEEEEEECSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEEEEEETTCCE
T ss_pred             EEEccCCCCEEEEEeCCCcE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCCEEEEEECCCeE
Confidence            999996 4789999999999 9999998877665422               2356789999999999999999999999


Q ss_pred             EEEECCCCcEEEE--Ee----c-------------CCceeEEEecc----CCCEEEEccccc
Q 021399          216 KLWDARTLELIKT--YV----T-------------ERPVNAVTMSP----LLDHVVLGGGQD  254 (313)
Q Consensus       216 ~iwd~~~~~~~~~--~~----~-------------~~~~~~~~~~p----~~~~~~~~~~~~  254 (313)
                      ++||+++++++..  +.    +             ...+.+++|+|    ++..++++|+.+
T Consensus       236 ~lWd~~~g~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~  297 (902)
T 2oaj_A          236 VFWDANSGHMIMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKSI  297 (902)
T ss_dssp             EEEETTTCCEEEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEECS
T ss_pred             EEEECCCCcEEEEEeecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEeCCCC
Confidence            9999999988754  21    1             23689999965    334666666443

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=100.00  E-value=2.1e-32  Score=240.99  Aligned_cols=267  Identities=13%  Similarity=0.153  Sum_probs=203.8

Q ss_pred             eeEEEEccCCCEEEEeeCCCCeEEEeCCCCcEEEEecCCCCceEEEEECCCCCeEEEeeCCCcEEEEECCCCeEEEEe-c
Q 021399           13 LTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTF-N   91 (313)
Q Consensus        13 v~~~~fs~~g~~l~s~s~d~~i~iw~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~v~vWd~~~~~~~~~~-~   91 (313)
                      +++++|+|+|++|++++.|+.|++||..+++....+..| ..+....|++++++|++|+.|+.|++||+.+++....+ .
T Consensus        59 ~~~~~~s~~g~~l~~~~~d~~v~i~d~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~  137 (420)
T 3vl1_A           59 GKGNTFEKVGSHLYKARLDGHDFLFNTIIRDGSKMLKRA-DYTAVDTAKLQMRRFILGTTEGDIKVLDSNFNLQREIDQA  137 (420)
T ss_dssp             CTTCEEEEEETTEEEEEETTEEEEEECCSEETTTTSCSC-CEEEEEEECSSSCEEEEEETTSCEEEECTTSCEEEEETTS
T ss_pred             ccceeeeecCCeEEEEEcCCcEEEEEecccceeeEEecC-CceEEEEEecCCCEEEEEECCCCEEEEeCCCcceeeeccc
Confidence            457999999999999999999999999988777677776 44555678999999999999999999999998887775 4


Q ss_pred             CCCCeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEccCCCEEEEeeCCCeEE
Q 021399           92 FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVR  171 (313)
Q Consensus        92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~t~~~d~~i~  171 (313)
                      +...+..+.|++++..++....     +..+.+|++.      .+..+..+.+|.+.|.++.|+|+++.+++++.|+.|+
T Consensus       138 h~~~v~~~~~~~~~~~l~s~s~-----d~~i~iwd~~------~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~  206 (420)
T 3vl1_A          138 HVSEITKLKFFPSGEALISSSQ-----DMQLKIWSVK------DGSNPRTLIGHRATVTDIAIIDRGRNVLSASLDGTIR  206 (420)
T ss_dssp             SSSCEEEEEECTTSSEEEEEET-----TSEEEEEETT------TCCCCEEEECCSSCEEEEEEETTTTEEEEEETTSCEE
T ss_pred             ccCccEEEEECCCCCEEEEEeC-----CCeEEEEeCC------CCcCceEEcCCCCcEEEEEEcCCCCEEEEEcCCCcEE
Confidence            6778999999987665544322     2233444432      2334556788999999999999999999999999999


Q ss_pred             EEECCCCceeeecccccCceeceEEE---------------------EECCCCCEEEEeeCCCcEEEEECCCCcEEEEEe
Q 021399          172 IWDTETGKLLKESDKETGHKKTITSL---------------------AKAADGSHFLTGSLDKSAKLWDARTLELIKTYV  230 (313)
Q Consensus       172 lwd~~~~~~~~~~~~~~~h~~~v~~~---------------------~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~  230 (313)
                      +||+++++.+..+.....|...+.++                     +|+|++++|++|+.||.|++||+++++.+..+.
T Consensus       207 iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~  286 (420)
T 3vl1_A          207 LWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGVITVHNVFSKEQTIQLP  286 (420)
T ss_dssp             EEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETTSCEEEEETTTCCEEEEEC
T ss_pred             EeECCCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEcCCCeEEEEECCCCceeEEcc
Confidence            99999988877765444454555554                     457899999999999999999999999887775


Q ss_pred             --cCCceeEEEeccCCCEEEEcccccCceeEeeccCCCceeeeeeehhhhhh-hccccc-cccceeEEEECCCCCeeEE
Q 021399          231 --TERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEE-IGGVKG-HFGPINALAFNPDGKRYGF  305 (313)
Q Consensus       231 --~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-h~~~V~~~~fspdgk~~~~  305 (313)
                        +...+.+++|+|++..++++++.+ +.+            ++||..+++. +..+.+ |..+|+++.| |+++.++.
T Consensus       287 ~~~~~~v~~~~~~~~~~~~l~~g~~d-g~i------------~vwd~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~l~s  351 (420)
T 3vl1_A          287 SKFTCSCNSLTVDGNNANYIYAGYEN-GML------------AQWDLRSPECPVGEFLINEGTPINNVYF-AAGALFVS  351 (420)
T ss_dssp             CTTSSCEEEEEECSSCTTEEEEEETT-SEE------------EEEETTCTTSCSEEEEESTTSCEEEEEE-ETTEEEEE
T ss_pred             cccCCCceeEEEeCCCCCEEEEEeCC-CeE------------EEEEcCCCcCchhhhhccCCCCceEEEe-CCCCEEEE
Confidence              346799999999998444444443 333            4555444322 344454 6788888865 57776654

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1e-32  Score=260.29  Aligned_cols=243  Identities=18%  Similarity=0.250  Sum_probs=187.0

Q ss_pred             ccccccccceeEEEEccCCCEEEEeeCCCCeEEEeCC--CCcEEEEecCCCCceEEEEECCC--CCeEEEeeCCCcEEEE
Q 021399            4 ILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFAD--NGERLGTYRGHNGAVWCCDVSRD--SMTLITGSADQTAKLW   79 (313)
Q Consensus         4 ~~l~~h~~~v~~~~fs~~g~~l~s~s~d~~i~iw~~~--~~~~~~~~~~H~~~V~~~~~~~~--~~~l~s~s~D~~v~vW   79 (313)
                      .++.+|.++|++++|+|+|++|++|+.||.|+|||+.  +++.+.++.+|.+.|++++|+|+  ++++++|+.||+|++|
T Consensus         3 ~~l~gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~vw   82 (753)
T 3jro_A            3 VIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIW   82 (753)
T ss_dssp             -----CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETTEEEEEEEECCCSSCEEEEEECCTTSCSEEEEEETTSCEEEE
T ss_pred             eecccCcceeEEEEECCCCCeEEEEECCCcEEEEecCCCCCccceeccCCcCceEEEEecCCCCCCEEEEEeCCCeEEEE
Confidence            5789999999999999999999999999999999988  55678899999999999999988  8999999999999999


Q ss_pred             ECCCCeEEEEecCCCCeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEccC--
Q 021399           80 NVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPL--  157 (313)
Q Consensus        80 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--  157 (313)
                      |+.+++..                                                  .+..+.+|...|.++.|+|+  
T Consensus        83 d~~~~~~~--------------------------------------------------~~~~~~~h~~~V~~v~~sp~~~  112 (753)
T 3jro_A           83 KEENGRWS--------------------------------------------------QIAVHAVHSASVNSVQWAPHEY  112 (753)
T ss_dssp             EEETTEEE--------------------------------------------------EEEEECCCSSCEEEEEECCGGG
T ss_pred             ECCCCccc--------------------------------------------------ccccccCCCCCeEEEEECCCCC
Confidence            98765421                                                  12233457788999999999  


Q ss_pred             CCEEEEeeCCCeEEEEECCCCceeeecccccCceeceEEEEECC-------------CCCEEEEeeCCCcEEEEECCCC-
Q 021399          158 NRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAA-------------DGSHFLTGSLDKSAKLWDARTL-  223 (313)
Q Consensus       158 ~~~i~t~~~d~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~-------------~~~~l~s~s~dg~i~iwd~~~~-  223 (313)
                      ++.+++|+.|+.|++||+.++...... ...+|...|.+++|+|             ++..+++|+.||.|++||++++ 
T Consensus       113 ~~~l~sgs~dg~I~vwdl~~~~~~~~~-~~~~~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~  191 (753)
T 3jro_A          113 GPLLLVASSDGKVSVVEFKENGTTSPI-IIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDA  191 (753)
T ss_dssp             CSEEEEEETTSEEEEEECCSSSCCCCE-EEECCSSCEEEEEECCCC---------CGGGCCEEEEETTSCEEEEEEETTT
T ss_pred             CCEEEEEeCCCcEEEEEeecCCCccee-EeecCCCceEEEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCc
Confidence            999999999999999999876433222 2246889999999999             5899999999999999999886 


Q ss_pred             ---cEEEEEe-cCCceeEEEeccC---CCEEEEcccccCceeEeeccCCCceeeeeeehhhhhhhccccccccceeEEEE
Q 021399          224 ---ELIKTYV-TERPVNAVTMSPL---LDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAF  296 (313)
Q Consensus       224 ---~~~~~~~-~~~~~~~~~~~p~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~f  296 (313)
                         .+...+. +...+.+++|+|+   +..++ +++.| +.+.+||.+.+....       ...+....+|.+.|++++|
T Consensus       192 ~~~~~~~~~~~h~~~V~~l~~sp~~~~~~~l~-s~s~D-g~I~iwd~~~~~~~~-------~~~~~~~~~~~~~v~~l~~  262 (753)
T 3jro_A          192 QTYVLESTLEGHSDWVRDVAWSPTVLLRSYLA-SVSQD-RTCIIWTQDNEQGPW-------KKTLLKEEKFPDVLWRASW  262 (753)
T ss_dssp             TEEEEEEEECCCSSCEEEEEECCCCSSSEEEE-EEESS-SCEEEEEESSSSSCC-------BCCBSSSSCCSSCCCCEEE
T ss_pred             ccceeeeeecCCCCcEEEEEeccCCCCCCEEE-EEecC-CEEEEecCCCCCCcc-------eeEEeccCCCCCceEEEEE
Confidence               3444443 4668999999999   55544 44443 334444443321100       1123344578999999999


Q ss_pred             CCCCCeeEEE
Q 021399          297 NPDGKRYGFL  306 (313)
Q Consensus       297 spdgk~~~~~  306 (313)
                      +|||+.++..
T Consensus       263 spdg~~l~s~  272 (753)
T 3jro_A          263 SLSGNVLALS  272 (753)
T ss_dssp             CTTTCCEEEE
T ss_pred             cCCCCEEEEE
Confidence            9999988754

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=100.00  E-value=2.7e-31  Score=248.74  Aligned_cols=231  Identities=19%  Similarity=0.292  Sum_probs=187.4

Q ss_pred             ccccccccceeEEEEccCCCEEEEeeCCCCeEEEeCCCCcEEEEecCCCCceEEEEECCCCCeEEEeeCCCcEEEEECCC
Q 021399            4 ILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVET   83 (313)
Q Consensus         4 ~~l~~h~~~v~~~~fs~~g~~l~s~s~d~~i~iw~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~v~vWd~~~   83 (313)
                      ..+.+|...|.+++|+|+|++|+||+.|+.|+|||+.+++.+..+.+|.+.|.+++|+|+++.|+||+.|++|++||+..
T Consensus       424 ~~~~~h~~~v~~v~~s~~g~~l~sgs~Dg~v~vwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~  503 (694)
T 3dm0_A          424 RRLTGHSHFVEDVVLSSDGQFALSGSWDGELRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLG  503 (694)
T ss_dssp             EEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTS
T ss_pred             ceecCCCCcEEEEEECCCCCEEEEEeCCCcEEEEECCCCcceeEEeCCCCCEEEEEEeCCCCEEEEEeCCCEEEEEECCC
Confidence            36789999999999999999999999999999999999999999999999999999999999999999999999999876


Q ss_pred             CeEEEEec----CCCCeeEEEeecCC---eEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEcc
Q 021399           84 GAQLFTFN----FDSPARSVDFAVGD---KLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGP  156 (313)
Q Consensus        84 ~~~~~~~~----~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~  156 (313)
                      ........    +...+.++.|+++.   .++..+.+..      +++|++.      .......+.+|.+.|.+++|+|
T Consensus       504 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~------v~vwd~~------~~~~~~~~~~h~~~v~~v~~sp  571 (694)
T 3dm0_A          504 ECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKT------VKVWNLS------NCKLRSTLAGHTGYVSTVAVSP  571 (694)
T ss_dssp             CEEEEECSSTTSCSSCEEEEEECSCSSSCEEEEEETTSC------EEEEETT------TCCEEEEECCCSSCEEEEEECT
T ss_pred             CcceeeccCCCCCCCcEEEEEEeCCCCcceEEEEeCCCe------EEEEECC------CCcEEEEEcCCCCCEEEEEEeC
Confidence            54333321    33457888898854   3444444433      3344332      2345667889999999999999


Q ss_pred             CCCEEEEeeCCCeEEEEECCCCceeeecccccCceeceEEEEECCCCCEEEEeeCCCcEEEEECCCCcEEEEEecCC---
Q 021399          157 LNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTER---  233 (313)
Q Consensus       157 ~~~~i~t~~~d~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~---  233 (313)
                      +++++++|+.|+.|++||+.+++.+..+.    +...+.+++|+|++.++++++ |+.|++||+++++++..+....   
T Consensus       572 dg~~l~sg~~Dg~i~iwd~~~~~~~~~~~----~~~~v~~~~~sp~~~~l~~~~-~~~i~iwd~~~~~~~~~~~~~~~~~  646 (694)
T 3dm0_A          572 DGSLCASGGKDGVVLLWDLAEGKKLYSLE----ANSVIHALCFSPNRYWLCAAT-EHGIKIWDLESKSIVEDLKVDLKAE  646 (694)
T ss_dssp             TSSEEEEEETTSBCEEEETTTTEEEECCB----CSSCEEEEEECSSSSEEEEEE-TTEEEEEETTTTEEEEEECCCCC--
T ss_pred             CCCEEEEEeCCCeEEEEECCCCceEEEec----CCCcEEEEEEcCCCcEEEEEc-CCCEEEEECCCCCChhhhccccccc
Confidence            99999999999999999999988776543    456799999999998777665 6679999999998887664210   


Q ss_pred             -----------------ceeEEEeccCCCEEEEcc
Q 021399          234 -----------------PVNAVTMSPLLDHVVLGG  251 (313)
Q Consensus       234 -----------------~~~~~~~~p~~~~~~~~~  251 (313)
                                       .+.+++|+|++..+++++
T Consensus       647 ~~~~~~~~~~~~~~~~~~~~~l~~spdg~~l~sgs  681 (694)
T 3dm0_A          647 AEKADNSGPAATKRKVIYCTSLNWSADGSTLFSGY  681 (694)
T ss_dssp             --------------CCCCEEEEEECTTSSEEEEEE
T ss_pred             cccccccccccCCceeEEeeeEEEcCCCCEEEEEc
Confidence                             257899999999877654

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=100.00  E-value=4.9e-33  Score=243.51  Aligned_cols=234  Identities=14%  Similarity=0.136  Sum_probs=160.0

Q ss_pred             ccccceeEEEEccCCCEEEEeeCCCCeEEEeCCCCcEE-----EEecCCCCceEEEEECC--------CCCeEEEeeCCC
Q 021399            8 GHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERL-----GTYRGHNGAVWCCDVSR--------DSMTLITGSADQ   74 (313)
Q Consensus         8 ~h~~~v~~~~fs~~g~~l~s~s~d~~i~iw~~~~~~~~-----~~~~~H~~~V~~~~~~~--------~~~~l~s~s~D~   74 (313)
                      .|...+....+++++.+|++++.|++|+|||.++++..     ..+.+|.+.|++++|+|        |+++|+|||.|+
T Consensus        87 ~~~~~~~~~~~~~~~~~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~  166 (393)
T 4gq1_A           87 LHDGDGNVNSSPVYSLFLACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDC  166 (393)
T ss_dssp             ----------CCEEEEEEEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTS
T ss_pred             ccCCCcceeecCCCCCEEEEEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEECCC
Confidence            34444555667778889999999999999999988643     45789999999999997        788999999999


Q ss_pred             cEEEEECCCCeEEEEecCCCCeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEE
Q 021399           75 TAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVW  154 (313)
Q Consensus        75 ~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~  154 (313)
                      +|+|||++++..+.                                                    .+..|.+.+.+++|
T Consensus       167 tv~~Wd~~~~~~~~----------------------------------------------------~~~~~~~~v~~v~~  194 (393)
T 4gq1_A          167 TLIIWRLTDEGPIL----------------------------------------------------AGYPLSSPGISVQF  194 (393)
T ss_dssp             EEEEEEEETTEEEE----------------------------------------------------EEEECSSCEEEEEE
T ss_pred             eEEEEECCCCceee----------------------------------------------------eecCCCCCcEEEEE
Confidence            99999987654321                                                    22345677889999


Q ss_pred             ccCCC-EEEEeeCCCeEEEEECCCCceeeecc----------------------cccCceeceEEEEEC-CCCCEEEEee
Q 021399          155 GPLNR-TIISAGEDAIVRIWDTETGKLLKESD----------------------KETGHKKTITSLAKA-ADGSHFLTGS  210 (313)
Q Consensus       155 ~~~~~-~i~t~~~d~~i~lwd~~~~~~~~~~~----------------------~~~~h~~~v~~~~~s-~~~~~l~s~s  210 (313)
                      +|++. ++++++.|+.|++||+.+++......                      ...+|...+.++.|+ +++..|++++
T Consensus       195 ~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~v~~v~~~~~dg~~l~s~s  274 (393)
T 4gq1_A          195 RPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNTCHSSGIASSLANVRWIGSDGSGILAMC  274 (393)
T ss_dssp             ETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESGGGC------CCSSSCSEEEEETTTTCEEEEEC
T ss_pred             CCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEecccccceeeeecccccccceeeeeecCCCCEEEEEe
Confidence            99874 79999999999999998765433211                      113567778888876 8999999999


Q ss_pred             CCCcEEEEECCCCcEEEEEec-CCce------------------eEEEeccC-CCEEEEcccccCceeEeeccCCCceee
Q 021399          211 LDKSAKLWDARTLELIKTYVT-ERPV------------------NAVTMSPL-LDHVVLGGGQDASAVTTTDHRAGKFEA  270 (313)
Q Consensus       211 ~dg~i~iwd~~~~~~~~~~~~-~~~~------------------~~~~~~p~-~~~~~~~~~~~~~~~~~~~~~~~~~~~  270 (313)
                      .|+++++||+++++....+.. ...+                  ....++|. ...++++|+.|+             .+
T Consensus       275 ~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sgs~Dg-------------~V  341 (393)
T 4gq1_A          275 KSGAWLRWNLFANNDYNEISDSTMKLGPKNLLPNVQGISLFPSLLGACPHPRYMDYFATAHSQHG-------------LI  341 (393)
T ss_dssp             TTSEEEEEEC-------------------CCSCSEEEECSSCCSSCCEECSSCTTEEEEEETTTT-------------EE
T ss_pred             CCCCEEEEECccCCCCceEeeecCccccEEEccccccccccCcceeEEEccCCCCEEEEEECCCC-------------EE
Confidence            999999999988765544321 1111                  12233343 333444444332             35


Q ss_pred             eeeehhhhhhhccccccccceeEEEECCCCCeeEEE
Q 021399          271 KFFDKILQEEIGGVKGHFGPINALAFNPDGKRYGFL  306 (313)
Q Consensus       271 ~~~~~~~~~~~~~~~~h~~~V~~~~fspdgk~~~~~  306 (313)
                      ++||..+++.+..+.+|..+|++++|||||+++|..
T Consensus       342 ~lwd~~~~~~~~~~~~~~~~V~svafspdG~~LA~a  377 (393)
T 4gq1_A          342 QLINTYEKDSNSIPIQLGMPIVDFCWHQDGSHLAIA  377 (393)
T ss_dssp             EEEETTCTTCCEEEEECSSCEEEEEECTTSSEEEEE
T ss_pred             EEEECCCCcEEEEecCCCCcEEEEEEcCCCCEEEEE
Confidence            677777676666777899999999999999999875

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=100.00  E-value=1.2e-30  Score=231.92  Aligned_cols=262  Identities=22%  Similarity=0.388  Sum_probs=204.5

Q ss_pred             cccccccceeEEEEccCCCEEEEeeCCCCeEEEeCCCCcEEEEecCCCCceEEEEECCCCCeEEEeeCCCcEEEEECCCC
Q 021399            5 LMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETG   84 (313)
Q Consensus         5 ~l~~h~~~v~~~~fs~~g~~l~s~s~d~~i~iw~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~v~vWd~~~~   84 (313)
                      .+.+|.+.|.++.|+  +++|++|+.|+.|++||..+++.+.++.+|...|.+++|+  ++.+++|+.|++|++||+.++
T Consensus       154 ~~~~h~~~v~~~~~~--~~~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~s~dg~i~~wd~~~~  229 (445)
T 2ovr_B          154 TLVGHTGGVWSSQMR--DNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLH--EKRVVSGSRDATLRVWDIETG  229 (445)
T ss_dssp             ECCCCSSCEEEEEEE--TTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEESSSC
T ss_pred             EEcCCCCCEEEEEec--CCEEEEEeCCCeEEEEECCcCcEEEEECCCCCcEEEEEec--CCEEEEEeCCCEEEEEECCCC
Confidence            578899999999997  6699999999999999999999999999999999999996  458999999999999999988


Q ss_pred             eEEEEec-CCCCeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEccCCCEEEE
Q 021399           85 AQLFTFN-FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIIS  163 (313)
Q Consensus        85 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~t  163 (313)
                      +.+..+. +..++.++.+ .+..++.+..+..      +.++++.      .+..+..+.+|.+.+.++.|  ++.++++
T Consensus       230 ~~~~~~~~~~~~v~~~~~-~~~~l~~~~~dg~------i~iwd~~------~~~~~~~~~~~~~~v~~~~~--~~~~l~~  294 (445)
T 2ovr_B          230 QCLHVLMGHVAAVRCVQY-DGRRVVSGAYDFM------VKVWDPE------TETCLHTLQGHTNRVYSLQF--DGIHVVS  294 (445)
T ss_dssp             CEEEEEECCSSCEEEEEE-CSSCEEEEETTSC------EEEEEGG------GTEEEEEECCCSSCEEEEEE--CSSEEEE
T ss_pred             cEEEEEcCCcccEEEEEE-CCCEEEEEcCCCE------EEEEECC------CCcEeEEecCCCCceEEEEE--CCCEEEE
Confidence            8776664 4556777777 4555555554433      2333322      23456677889999999988  6789999


Q ss_pred             eeCCCeEEEEECCCCceeeecccccCceeceEEEEECCCCCEEEEeeCCCcEEEEECCCCcEEEEEe----cCCceeEEE
Q 021399          164 AGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYV----TERPVNAVT  239 (313)
Q Consensus       164 ~~~d~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~----~~~~~~~~~  239 (313)
                      ++.|+.|++||+.+++++..+.   +|...+.++.++  ++++++|+.||.|++||+++++++..+.    +...+.+++
T Consensus       295 ~~~d~~i~i~d~~~~~~~~~~~---~~~~~v~~~~~~--~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~  369 (445)
T 2ovr_B          295 GSLDTSIRVWDVETGNCIHTLT---GHQSLTSGMELK--DNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQ  369 (445)
T ss_dssp             EETTSCEEEEETTTCCEEEEEC---CCCSCEEEEEEE--TTEEEEEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEE
T ss_pred             EeCCCeEEEEECCCCCEEEEEc---CCcccEEEEEEe--CCEEEEEeCCCeEEEEECCCCcEEEEEccCCCCCCCEEEEE
Confidence            9999999999999988876653   578888888774  6799999999999999999999998886    455788999


Q ss_pred             eccCCCEEEEcccccCceeEeeccCCCceeeeeeehhhhhhhccc-----cccccceeEEEECCCCCeeEEE
Q 021399          240 MSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGV-----KGHFGPINALAFNPDGKRYGFL  306 (313)
Q Consensus       240 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~h~~~V~~~~fspdgk~~~~~  306 (313)
                      |++  +.+++ ++.| +.+.+||.+            +++.+..+     .+|.++|++++|+|+|+.+|..
T Consensus       370 ~~~--~~l~s-~~~d-g~v~iwd~~------------~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~la~~  425 (445)
T 2ovr_B          370 FNK--NFVIT-SSDD-GTVKLWDLK------------TGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVG  425 (445)
T ss_dssp             ECS--SEEEE-EETT-SEEEEEETT------------TCCEEEEEEECTTGGGTCEEEEEEECSSEEEEEEE
T ss_pred             ECC--CEEEE-EeCC-CeEEEEECC------------CCceeeeeeccccCCCCceEEEEEecCCEEEEEEc
Confidence            864  44444 3433 334444444            44333333     4689999999999999887753

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=100.00  E-value=3.8e-32  Score=240.64  Aligned_cols=253  Identities=19%  Similarity=0.228  Sum_probs=192.2

Q ss_pred             ccccccccceeEEEEccC-CCEEEEeeCCCCeEEEeCCC----------CcEEEEecCCCCceEEEEECCCCC-eEEEee
Q 021399            4 ILMKGHERPLTYLKYNKD-GDLLFSCAKDHTPTVWFADN----------GERLGTYRGHNGAVWCCDVSRDSM-TLITGS   71 (313)
Q Consensus         4 ~~l~~h~~~v~~~~fs~~-g~~l~s~s~d~~i~iw~~~~----------~~~~~~~~~H~~~V~~~~~~~~~~-~l~s~s   71 (313)
                      ..+.+|.+.|++++|+|+ +.+|++++.||.|++|++.+          .+.+.++.+|...|.+++|+|+++ +|++|+
T Consensus       122 ~~~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~  201 (430)
T 2xyi_A          122 EIKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSAS  201 (430)
T ss_dssp             EEEEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTTEEEEEC
T ss_pred             EEEEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCCeEEEEe
Confidence            456789999999999997 68999999999999999986          567788999999999999999988 999999


Q ss_pred             CCCcEEEEECCCCeEEEEecCCCCeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEE
Q 021399           72 ADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINR  151 (313)
Q Consensus        72 ~D~~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~  151 (313)
                      .||+|++||+.++....                               ..              ......+.+|...|.+
T Consensus       202 ~dg~i~vwd~~~~~~~~-------------------------------~~--------------~~~~~~~~~h~~~v~~  236 (430)
T 2xyi_A          202 DDHTICLWDINATPKEH-------------------------------RV--------------IDAKNIFTGHTAVVED  236 (430)
T ss_dssp             TTSCEEEEETTSCCBGG-------------------------------GE--------------EECSEEECCCSSCEEE
T ss_pred             CCCeEEEEeCCCCCCCC-------------------------------ce--------------eccceeecCCCCCEee
Confidence            99999999998632100                               00              0011234567888999


Q ss_pred             EEEcc-CCCEEEEeeCCCeEEEEECCCCc---eeeecccccCceeceEEEEECCCCC-EEEEeeCCCcEEEEECCC-CcE
Q 021399          152 AVWGP-LNRTIISAGEDAIVRIWDTETGK---LLKESDKETGHKKTITSLAKAADGS-HFLTGSLDKSAKLWDART-LEL  225 (313)
Q Consensus       152 ~~~~~-~~~~i~t~~~d~~i~lwd~~~~~---~~~~~~~~~~h~~~v~~~~~s~~~~-~l~s~s~dg~i~iwd~~~-~~~  225 (313)
                      ++|+| .+..|++++.|+.|++||++++.   .+..+   ..|...|++++|+|++. .+++|+.||.|++||+++ ..+
T Consensus       237 v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~---~~~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~  313 (430)
T 2xyi_A          237 VAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTV---DAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLK  313 (430)
T ss_dssp             EEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEEE---ECCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSC
T ss_pred             eEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeEe---ecCCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCC
Confidence            99999 67889999999999999998763   33332   36889999999999987 689999999999999998 456


Q ss_pred             EEEEe-cCCceeEEEeccCCCEEEEcccccCceeEeeccCCCceeeeeeehhh--hhhhccccccccceeEEEECCCCC-
Q 021399          226 IKTYV-TERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKIL--QEEIGGVKGHFGPINALAFNPDGK-  301 (313)
Q Consensus       226 ~~~~~-~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~h~~~V~~~~fspdgk-  301 (313)
                      +..+. +...+.+++|+|++..++++++.++ .+.+||.+....+...-+...  .+.+..+.+|...|++++|+|+++ 
T Consensus       314 ~~~~~~h~~~v~~i~~sp~~~~~l~s~~~d~-~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~  392 (430)
T 2xyi_A          314 LHSFESHKDEIFQVQWSPHNETILASSGTDR-RLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPW  392 (430)
T ss_dssp             SEEEECCSSCEEEEEECSSCTTEEEEEETTS-CCEEEEGGGTTCCCCHHHHHHCCTTEEEECCCCSSCEEEEEECSSSTT
T ss_pred             eEEeecCCCCEEEEEECCCCCCEEEEEeCCC-cEEEEeCCCCccccCccccccCCcceEEEcCCCCCCceEEEECCCCCC
Confidence            66665 5678999999999987666665543 344444332111000000000  234456678999999999999999 


Q ss_pred             eeEE
Q 021399          302 RYGF  305 (313)
Q Consensus       302 ~~~~  305 (313)
                      .++.
T Consensus       393 ~l~s  396 (430)
T 2xyi_A          393 IICS  396 (430)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            5544

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.2e-31  Score=237.02  Aligned_cols=268  Identities=15%  Similarity=0.137  Sum_probs=198.7

Q ss_pred             ccceeEEEEccCCCEEEEeeCCCCeEEEeCCCCc---EEEEecC------------------------------------
Q 021399           10 ERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGE---RLGTYRG------------------------------------   50 (313)
Q Consensus        10 ~~~v~~~~fs~~g~~l~s~s~d~~i~iw~~~~~~---~~~~~~~------------------------------------   50 (313)
                      ..++.+++|+|+|++|+++ .++.|++||+.+++   .+.++..                                    
T Consensus         4 ~~p~~~v~~s~dg~~l~~~-~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (450)
T 2vdu_B            4 IHPLQNLLTSRDGSLVFAI-IKNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNKGD   82 (450)
T ss_dssp             ECCCCEEEECSSSSEEEEE-ETTEEEEEEEETTTEEEEEEEEECCC----------------------------------
T ss_pred             cccEEEEEecCCCCEEEEE-eCCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccccCcCc
Confidence            3578999999999977765 57899999999998   6665553                                    


Q ss_pred             ------------------CCCceEEEEECCCCCeE-EEeeCCCcEEEEECC--CCeEEEEe---cCCCCeeEEEeecCCe
Q 021399           51 ------------------HNGAVWCCDVSRDSMTL-ITGSADQTAKLWNVE--TGAQLFTF---NFDSPARSVDFAVGDK  106 (313)
Q Consensus        51 ------------------H~~~V~~~~~~~~~~~l-~s~s~D~~v~vWd~~--~~~~~~~~---~~~~~~~~~~~~~~~~  106 (313)
                                        |.+.|.+++|+|+++.| ++++.|++|++||+.  +++.+..+   .....+..+.|++++.
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~  162 (450)
T 2vdu_B           83 SIKRTAAKVPSPGLGAPPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAEDDT  162 (450)
T ss_dssp             -----------------CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECTTSS
T ss_pred             cccccCccccCCCCCCCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcCCCC
Confidence                              34479999999999986 899999999999998  77766555   3456788999999776


Q ss_pred             EEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEccC---CCEEEEeeCCCeEEEEECCCCceeee
Q 021399          107 LAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPL---NRTIISAGEDAIVRIWDTETGKLLKE  183 (313)
Q Consensus       107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~---~~~i~t~~~d~~i~lwd~~~~~~~~~  183 (313)
                      .++....     .+.+..+++.....  .......+.+|.+.|.++.|+|+   +++|++++.|+.|++||+.+++.+..
T Consensus       163 ~l~~~~~-----~g~v~~~~~~~~~~--~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~  235 (450)
T 2vdu_B          163 TVIIADK-----FGDVYSIDINSIPE--EKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVDK  235 (450)
T ss_dssp             EEEEEET-----TSEEEEEETTSCCC--SSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCEEE
T ss_pred             EEEEEeC-----CCcEEEEecCCccc--ccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCceeee
Confidence            6554432     11122222211110  00022244578899999999999   99999999999999999998877655


Q ss_pred             cccccCceeceEEEEECCCCCEEEEeeCCCcEEEEECCCCcEEEEEec--------------------------CCceeE
Q 021399          184 SDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVT--------------------------ERPVNA  237 (313)
Q Consensus       184 ~~~~~~h~~~v~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~--------------------------~~~~~~  237 (313)
                      +.  .+|...|.+++|+ ++.+|++++.|++|++||+++++++..+..                          ...+..
T Consensus       236 ~~--~~h~~~v~~~~~s-d~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~  312 (450)
T 2vdu_B          236 WL--FGHKHFVSSICCG-KDYLLLSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSK  312 (450)
T ss_dssp             EC--CCCSSCEEEEEEC-STTEEEEEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEE
T ss_pred             ee--cCCCCceEEEEEC-CCCEEEEEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEEE
Confidence            32  3689999999999 999999999999999999999998887752                          135778


Q ss_pred             EEeccCCCEEEEcccccCceeEeeccCCCceeeeeeehhhh---hhhccccccccceeEEEECCCC
Q 021399          238 VTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQ---EEIGGVKGHFGPINALAFNPDG  300 (313)
Q Consensus       238 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~h~~~V~~~~fspdg  300 (313)
                      ++|+|++..+++++..+ ..+.+|+...          ...   +.+..+.+| +.|++++|+|++
T Consensus       313 i~~~~~~~~l~~~~~~d-~~i~iw~~~~----------~~~~~l~~~~~~~~~-~~v~~~~~~~~~  366 (450)
T 2vdu_B          313 IIKSKNLPFVAFFVEAT-KCIIILEMSE----------KQKGDLALKQIITFP-YNVISLSAHNDE  366 (450)
T ss_dssp             EEECSSSSEEEEEETTC-SEEEEEEECS----------SSTTCEEEEEEEECS-SCEEEEEEETTE
T ss_pred             EEEeCCCCEEEEEECCC-CeEEEEEecc----------CCCCceeeccEeccC-CceEEEEecCCc
Confidence            99999999888776333 3344444300          222   334455667 899999999963

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.9e-32  Score=261.12  Aligned_cols=289  Identities=13%  Similarity=0.159  Sum_probs=192.8

Q ss_pred             cccccccceeEEEEccC-CCEEEEeeCCCCeEEEeCCCCcEEEEecCC------------------CCceEEEEECCCCC
Q 021399            5 LMKGHERPLTYLKYNKD-GDLLFSCAKDHTPTVWFADNGERLGTYRGH------------------NGAVWCCDVSRDSM   65 (313)
Q Consensus         5 ~l~~h~~~v~~~~fs~~-g~~l~s~s~d~~i~iw~~~~~~~~~~~~~H------------------~~~V~~~~~~~~~~   65 (313)
                      .+++|.++|.+++|+|+ +..|++|+.|+.| +||+.+++.+.++.+|                  ...|++++|+|+|+
T Consensus       146 ~~~~h~~~V~sl~~sp~~~~~l~~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~  224 (902)
T 2oaj_A          146 FPAARLSPIVSIQWNPRDIGTVLISYEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSL  224 (902)
T ss_dssp             CSSSCCCCCCEEEEETTEEEEEEEECSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSS
T ss_pred             ccccCCCCeEEEEEccCCCCEEEEEeCCCcE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCC
Confidence            46889999999999996 4799999999999 9999999998888776                  57899999999999


Q ss_pred             eEEEeeCCCcEEEEECCCCeEEEEecC-------------------CCCeeEEEeec----CC-eEEEEE-CCC-----c
Q 021399           66 TLITGSADQTAKLWNVETGAQLFTFNF-------------------DSPARSVDFAV----GD-KLAVIT-TDP-----F  115 (313)
Q Consensus        66 ~l~s~s~D~~v~vWd~~~~~~~~~~~~-------------------~~~~~~~~~~~----~~-~~~~~~-~~~-----~  115 (313)
                      +|+||+.|++|++||+++++.+.....                   ..++..+.|.+    ++ .+++.. .+.     .
T Consensus       225 ~lasgs~Dg~i~lWd~~~g~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~~~~~~~~  304 (902)
T 2oaj_A          225 HIITIHEDNSLVFWDANSGHMIMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKSISRGDNQS  304 (902)
T ss_dssp             EEEEEETTCCEEEEETTTCCEEEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEECSTTSSCCC
T ss_pred             EEEEEECCCeEEEEECCCCcEEEEEeecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEeCCCCCCCCCce
Confidence            999999999999999999887654211                   12466777753    22 333332 211     0


Q ss_pred             e-ecccc----------------------ce---------eeeeeeCC---------CC------------------CCC
Q 021399          116 M-ELNSA----------------------IH---------VKRIARDP---------AD------------------QGG  136 (313)
Q Consensus       116 ~-~~~~~----------------------~~---------~~~~~~~~---------~~------------------~~~  136 (313)
                      . .++..                      ..         +.++....         .+                  ..+
T Consensus       305 v~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~sp~~~g~~d~~~l~~~s~dg~l~~~~~~~g  384 (902)
T 2oaj_A          305 LTMIDLGYTPRYSITSYEGMKNYYANPKQMKIFPLPTNVPIVNILPIPRQSPYFAGCHNPGLILLILGNGEIETMLYPSG  384 (902)
T ss_dssp             EEEEEEEECCCGGGCCHHHHHHHHHSCSEEEEECCSSSSCEEEEEECCSSCSHHHHTBSCSEEEEEETTSCEEEEETTTC
T ss_pred             EEEEecCCCCCccccchhhhhhhhcCccceEEEecCCCCceEEEEECCCCCCCcCCCCCceeEEEEcCCCcEEEEECCCC
Confidence            0 00000                      00         00000000         00                  000


Q ss_pred             ceEE-----------------------------------------EecCCCCceEEEEEccCCCEEEEeeCCCeEEEEEC
Q 021399          137 ESVL-----------------------------------------ILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDT  175 (313)
Q Consensus       137 ~~~~-----------------------------------------~~~~~~~~i~~~~~~~~~~~i~t~~~d~~i~lwd~  175 (313)
                      ....                                         .+.+|...+..++|+|+++.+++|+.|++|++||+
T Consensus       385 ~~~~~~~~~~~~l~~~~~~v~~~~~s~~~~~~w~~~~~~~~~~~~~l~G~~~~v~sv~~spdg~~laSgs~DgtVrlWd~  464 (902)
T 2oaj_A          385 IFTDKASLFPQNLSWLRPLATTSMAASVPNKLWLGALSAAQNKDYLLKGGVRTKRQKLPAEYGTAFITGHSNGSVRIYDA  464 (902)
T ss_dssp             CEECCGGGSCGGGTTBTTBEEEEEEEEEEHHHHHHHHHTTBCCCCSCCCSBCCCCCCCCCSEEEEEEEEETTSEEEEEES
T ss_pred             CcccccccCCCcccccCCCeeEEEEEEcCHHHHHHHHhcccCCCCcccCCcCCCCcccccccCcEEEEecCCCcEEEEEC
Confidence            0000                                         01223333444566788999999999999999999


Q ss_pred             CCCceee--eccc------ccCceeceEEEEECCCCCEEEEeeCCCcEEEEECCCCc-----------------------
Q 021399          176 ETGKLLK--ESDK------ETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLE-----------------------  224 (313)
Q Consensus       176 ~~~~~~~--~~~~------~~~h~~~v~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~-----------------------  224 (313)
                      .++....  .+..      ..+|...|.+++|+||+.+||+|+.||+|++||+.+++                       
T Consensus       465 ~~g~~~~~~~~~~~l~~~~~~~h~~~V~svafspdg~~LAsgs~DgtV~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  544 (902)
T 2oaj_A          465 SHGDIQDNASFEVNLSRTLNKAKELAVDKISFAAETLELAVSIETGDVVLFKYEVNQFYSVENRPESGDLEMNFRRFSLN  544 (902)
T ss_dssp             SCCTTTTTBCEEEEHHHHTTCSSSCCEEEEEEETTTTEEEEEETTSCEEEEEEEECCC---------------CCSCCGG
T ss_pred             CCccccCCceEEeechhhcCCCCCCceeEEEecCCCCeEEEEecCcEEEEEEecCccccCccccCCCcccceeeeecccc
Confidence            8764210  0000      12688999999999999999999999999999987652                       


Q ss_pred             ----------------------EEEEEe-cCCceeEEEeccCCCEEEEcccccCceeEeeccCCCceeeeeeehhhhhhh
Q 021399          225 ----------------------LIKTYV-TERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEI  281 (313)
Q Consensus       225 ----------------------~~~~~~-~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  281 (313)
                                            ++..+. +...|.+++|+|++ .++++ +. +..+.+||.+.....   +.    ..+
T Consensus       545 ~~~~~~~~~~~~~~~~~~~g~~~~~~l~~h~~~V~svafSpdG-~lAsg-s~-D~tv~lwd~~~~~~~---~~----~~~  614 (902)
T 2oaj_A          545 NTNGVLVDVRDRAPTGVRQGFMPSTAVHANKGKTSAINNSNIG-FVGIA-YA-AGSLMLIDRRGPAII---YM----ENI  614 (902)
T ss_dssp             GSSCSEEECGGGCCTTCSEEEEEEEEECCCSCSEEEEEECBTS-EEEEE-ET-TSEEEEEETTTTEEE---EE----EEG
T ss_pred             CCccccccccccCCCCCCCccceeEEEEcCCCcEEEEEecCCc-EEEEE-eC-CCcEEEEECCCCeEE---EE----eeh
Confidence                                  345554 56789999999999 54443 33 334444554332210   00    011


Q ss_pred             cccc-ccccceeEEEEC-----CCC---CeeE
Q 021399          282 GGVK-GHFGPINALAFN-----PDG---KRYG  304 (313)
Q Consensus       282 ~~~~-~h~~~V~~~~fs-----pdg---k~~~  304 (313)
                      ..+. +|.+.|++|+||     |||   +.++
T Consensus       615 ~~~~~gh~~~V~sv~Fs~~~~~~Dg~~~~~l~  646 (902)
T 2oaj_A          615 REISGAQSACVTCIEFVIMEYGDDGYSSILMV  646 (902)
T ss_dssp             GGTCSSCCCCEEEEEEEEEECTTSSSEEEEEE
T ss_pred             hHhccccccceEEEEEEEEecCCCCCcceEEE
Confidence            3454 899999999999     986   5654

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=100.00  E-value=5.6e-30  Score=226.94  Aligned_cols=260  Identities=25%  Similarity=0.388  Sum_probs=204.4

Q ss_pred             cccccceeEEEEccCCCEEEEeeCCCCeEEEeCCCCcEEEEecCCCCceEEEEECCCCCeEEEeeCCCcEEEEECCCCeE
Q 021399            7 KGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQ   86 (313)
Q Consensus         7 ~~h~~~v~~~~fs~~g~~l~s~s~d~~i~iw~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~v~vWd~~~~~~   86 (313)
                      .+|...|.|+.|  ++++|++|+.|+.|++||..+++.+.++.+|.+.|.+++|  +++.+++|+.||+|++||+.+++.
T Consensus       130 ~~~~~~v~~~~~--d~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~~~~~  205 (435)
T 1p22_A          130 SETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNTGEM  205 (435)
T ss_dssp             CSSCCCEEEEEC--CSSEEEEEESSSCEEEEESSSCCEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESSSCCE
T ss_pred             cCCCCcEEEEEE--CCCEEEEEeCCCeEEEEeCCCCeEEEEEcCCCCcEEEEEE--CCCEEEEEcCCCeEEEEECCCCcE
Confidence            356677888876  7999999999999999999999999999999999999998  678999999999999999999988


Q ss_pred             EEEec-CCCCeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEccCCCEEEEee
Q 021399           87 LFTFN-FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAG  165 (313)
Q Consensus        87 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~t~~  165 (313)
                      +..+. +...+..+.+.+ +.++.++.+..      +.++++...   ........+.+|...|..+.+  +++++++|+
T Consensus       206 ~~~~~~h~~~v~~l~~~~-~~l~s~s~dg~------i~vwd~~~~---~~~~~~~~~~~~~~~v~~~~~--~~~~l~s~~  273 (435)
T 1p22_A          206 LNTLIHHCEAVLHLRFNN-GMMVTCSKDRS------IAVWDMASP---TDITLRRVLVGHRAAVNVVDF--DDKYIVSAS  273 (435)
T ss_dssp             EEEECCCCSCEEEEECCT-TEEEEEETTSC------EEEEECSSS---SCCEEEEEECCCSSCEEEEEE--ETTEEEEEE
T ss_pred             EEEEcCCCCcEEEEEEcC-CEEEEeeCCCc------EEEEeCCCC---CCceeeeEecCCCCcEEEEEe--CCCEEEEEe
Confidence            77665 355677777764 45555554433      333433211   111233567789999999988  678999999


Q ss_pred             CCCeEEEEECCCCceeeecccccCceeceEEEEECCCCCEEEEeeCCCcEEEEECCCCcEEEEEe-cCCceeEEEeccCC
Q 021399          166 EDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYV-TERPVNAVTMSPLL  244 (313)
Q Consensus       166 ~d~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~-~~~~~~~~~~~p~~  244 (313)
                      .|+.|++||+.+++.+..+.   +|...+.++++  +++++++|+.||.|++||+++++++.++. +...+.+++|  ++
T Consensus       274 ~dg~i~vwd~~~~~~~~~~~---~~~~~v~~~~~--~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~--~~  346 (435)
T 1p22_A          274 GDRTIKVWNTSTCEFVRTLN---GHKRGIACLQY--RDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRF--DN  346 (435)
T ss_dssp             TTSEEEEEETTTCCEEEEEE---CCSSCEEEEEE--ETTEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEC--CS
T ss_pred             CCCeEEEEECCcCcEEEEEc---CCCCcEEEEEe--CCCEEEEEeCCCeEEEEECCCCCEEEEEeCCcCcEEEEEe--cC
Confidence            99999999999988877654   68889999998  46899999999999999999999998886 4567889988  44


Q ss_pred             CEEEEcccccCceeEeeccCCCceeeeeeehhhhh---------hhccccccccceeEEEECCCCCeeEE
Q 021399          245 DHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQE---------EIGGVKGHFGPINALAFNPDGKRYGF  305 (313)
Q Consensus       245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~h~~~V~~~~fspdgk~~~~  305 (313)
                      ..++++ +.|+             .+++||...+.         .+..+.+|.++|++++|  |++.++.
T Consensus       347 ~~l~sg-~~dg-------------~i~vwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s  400 (435)
T 1p22_A          347 KRIVSG-AYDG-------------KIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQF--DEFQIVS  400 (435)
T ss_dssp             SEEEEE-ETTS-------------CEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEE--CSSCEEE
T ss_pred             CEEEEE-eCCC-------------cEEEEECCCCCCccccccchheeeccCCCCCeEEEEe--CCCEEEE
Confidence            555544 3332             35667766555         56678899999999999  6776654

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=100.00  E-value=8.6e-31  Score=249.11  Aligned_cols=229  Identities=20%  Similarity=0.279  Sum_probs=189.0

Q ss_pred             ccccccccceeEEEEccCCCEEEEeeCCCCeEEEeCCCCcEEEEecCCCCceEEEEECCCCCeEEEeeCCCcEEEEECCC
Q 021399            4 ILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVET   83 (313)
Q Consensus         4 ~~l~~h~~~v~~~~fs~~g~~l~s~s~d~~i~iw~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~v~vWd~~~   83 (313)
                      ..+.+|..+|.+++|+|++++|++++.|+.|++||..+++.+.++.+|.+.|.+++|+|+++.+++++.||+|++||+.+
T Consensus        49 ~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~  128 (814)
T 3mkq_A           49 RSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWEN  128 (814)
T ss_dssp             EEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSEEEEEEGGG
T ss_pred             EEEecCCCcEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEecCCCCEEEEEEeCCCCEEEEEcCCCEEEEEECCC
Confidence            35678999999999999999999999999999999999999999999999999999999999999999999999999987


Q ss_pred             C-eEEEEec-CCCCeeEEEeec-CCeEEE-EECCCceeccccceeeeeeeCCCCCCCceEEEecC-CCCceEEEEEcc--
Q 021399           84 G-AQLFTFN-FDSPARSVDFAV-GDKLAV-ITTDPFMELNSAIHVKRIARDPADQGGESVLILKG-PQGRINRAVWGP--  156 (313)
Q Consensus        84 ~-~~~~~~~-~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~~~--  156 (313)
                      + .....+. +..++.++.|+| ++..++ +..+.      .+.++++..      +.....+.. +...+..+.|+|  
T Consensus       129 ~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg------~v~vwd~~~------~~~~~~~~~~~~~~v~~~~~~~~~  196 (814)
T 3mkq_A          129 NWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDR------TVKVWSLGQ------STPNFTLTTGQERGVNYVDYYPLP  196 (814)
T ss_dssp             TSEEEEEEECCSSCEEEEEEETTEEEEEEEEETTS------EEEEEETTC------SSCSEEEECCCTTCCCEEEECCST
T ss_pred             CceEEEEEcCCCCcEEEEEEEcCCCCEEEEEeCCC------eEEEEECCC------CcceeEEecCCCCCEEEEEEEECC
Confidence            6 4444443 466788999998 444443 33333      233333211      122223333 447899999999  


Q ss_pred             CCCEEEEeeCCCeEEEEECCCCceeeecccccCceeceEEEEECCCCCEEEEeeCCCcEEEEECCCCcEEEEEec-CCce
Q 021399          157 LNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVT-ERPV  235 (313)
Q Consensus       157 ~~~~i~t~~~d~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~-~~~~  235 (313)
                      +++++++++.|+.|++||+.+++.+..+.   +|...|.+++|+|++.+|++++.||.|++||+.+++++..+.. ...+
T Consensus       197 ~~~~l~~~~~dg~i~~~d~~~~~~~~~~~---~~~~~v~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~v  273 (814)
T 3mkq_A          197 DKPYMITASDDLTIKIWDYQTKSCVATLE---GHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERS  273 (814)
T ss_dssp             TCCEEEEECTTSEEEEEETTTTEEEEEEE---CCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCSEEEEECCSSSSE
T ss_pred             CCCEEEEEeCCCEEEEEECCCCcEEEEEc---CCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEeecCCCcE
Confidence            89999999999999999999888766553   5888999999999999999999999999999999999888764 4679


Q ss_pred             eEEEeccCCCEE
Q 021399          236 NAVTMSPLLDHV  247 (313)
Q Consensus       236 ~~~~~~p~~~~~  247 (313)
                      .+++|+|++..+
T Consensus       274 ~~~~~~~~~~~~  285 (814)
T 3mkq_A          274 WCIATHPTGRKN  285 (814)
T ss_dssp             EEEEECTTCGGG
T ss_pred             EEEEEccCCCce
Confidence            999999998764

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=100.00  E-value=3.9e-31  Score=222.75  Aligned_cols=199  Identities=20%  Similarity=0.334  Sum_probs=155.4

Q ss_pred             ccccccccceeEEEEccC--CCEEEEeeCCCCeEEEeCCCCc--EEEEecCCCCceEEEEECCC--CCeEEEeeCCCcEE
Q 021399            4 ILMKGHERPLTYLKYNKD--GDLLFSCAKDHTPTVWFADNGE--RLGTYRGHNGAVWCCDVSRD--SMTLITGSADQTAK   77 (313)
Q Consensus         4 ~~l~~h~~~v~~~~fs~~--g~~l~s~s~d~~i~iw~~~~~~--~~~~~~~H~~~V~~~~~~~~--~~~l~s~s~D~~v~   77 (313)
                      .+|.+|.++|.+++|+|+  |++|+||+.|++|+|||+.+++  .+.++.+|...|.+++|+|+  +++|++++.|++|+
T Consensus        47 ~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~  126 (297)
T 2pm7_B           47 DTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVS  126 (297)
T ss_dssp             EEECCCSSCEEEEEECCGGGCSEEEEEETTTEEEEEEBSSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEE
T ss_pred             EEEccccCCeEEEEecCCCcCCEEEEEcCCCEEEEEEcCCCceEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEE
Confidence            378899999999999864  8999999999999999999874  56778899999999999997  78999999999999


Q ss_pred             EEECCCCeEEEEecCCCCeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEccC
Q 021399           78 LWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPL  157 (313)
Q Consensus        78 vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~  157 (313)
                      +||++++....                                                  ...+.+|...+.++.|+|.
T Consensus       127 ~wd~~~~~~~~--------------------------------------------------~~~~~~h~~~v~~~~~~p~  156 (297)
T 2pm7_B          127 VVEFKENGTTS--------------------------------------------------PIIIDAHAIGVNSASWAPA  156 (297)
T ss_dssp             EEEBCSSSCBC--------------------------------------------------CEEEECCSSCEEEEEECCC
T ss_pred             EEEecCCCcee--------------------------------------------------eeeeecccCccceEeecCC
Confidence            99987642100                                                  0112345555666666664


Q ss_pred             -------------CCEEEEeeCCCeEEEEECCCCce-eeecccccCceeceEEEEECCCC---CEEEEeeCCCcEEEEEC
Q 021399          158 -------------NRTIISAGEDAIVRIWDTETGKL-LKESDKETGHKKTITSLAKAADG---SHFLTGSLDKSAKLWDA  220 (313)
Q Consensus       158 -------------~~~i~t~~~d~~i~lwd~~~~~~-~~~~~~~~~h~~~v~~~~~s~~~---~~l~s~s~dg~i~iwd~  220 (313)
                                   +++|++|+.|+.|++||+.+++. ........+|...|.+++|+|++   .+|++++.|++|++||+
T Consensus       157 ~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp~~~~~~~las~s~D~~v~iWd~  236 (297)
T 2pm7_B          157 TIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMASVSQDRTCIIWTQ  236 (297)
T ss_dssp             C------------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEE
T ss_pred             cccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCCceEEEEECCCCCCceEEEEEECCCcEEEEEe
Confidence                         56899999999999999876541 11111234799999999999985   89999999999999999


Q ss_pred             CCCc---EEEEE---ecCCceeEEEeccCCCEEEEccc
Q 021399          221 RTLE---LIKTY---VTERPVNAVTMSPLLDHVVLGGG  252 (313)
Q Consensus       221 ~~~~---~~~~~---~~~~~~~~~~~~p~~~~~~~~~~  252 (313)
                      ++..   ....+   .+...+.+++|+|++..+++++.
T Consensus       237 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~las~~~  274 (297)
T 2pm7_B          237 DNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGG  274 (297)
T ss_dssp             SSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEET
T ss_pred             CCCCCccceeeeecccCCCcEEEEEECCCCCEEEEEcC
Confidence            8743   11222   23457899999999998776654

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.2e-31  Score=238.05  Aligned_cols=242  Identities=11%  Similarity=0.134  Sum_probs=179.1

Q ss_pred             ccccceeEEEEccCCCEEEEeeCCCCeEEEeCCCCcEEEEecCCCC-----ceEEEEECCCCCeEEEeeCCCcEEEEECC
Q 021399            8 GHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNG-----AVWCCDVSRDSMTLITGSADQTAKLWNVE   82 (313)
Q Consensus         8 ~h~~~v~~~~fs~~g~~l~s~s~d~~i~iw~~~~~~~~~~~~~H~~-----~V~~~~~~~~~~~l~s~s~D~~v~vWd~~   82 (313)
                      .|.+.|.+++|||||++|++++.||.|+|||.+.  ++..+. |..     .|.+++|||||++|++|+.||+|++||+.
T Consensus        83 ~~~~~V~~vawSPdG~~LAs~s~dg~V~iwd~~~--~l~~l~-~~~~~~~~sv~svafSPDG~~LAsgs~DGtVkIWd~~  159 (588)
T 2j04_A           83 QPVCYPRVCKPSPIDDWMAVLSNNGNVSVFKDNK--MLTNLD-SKGNLSSRTYHCFEWNPIESSIVVGNEDGELQFFSIR  159 (588)
T ss_dssp             SCSCCEEEEEECSSSSCEEEEETTSCEEEEETTE--EEEECC-CSSCSTTTCEEEEEECSSSSCEEEEETTSEEEEEECC
T ss_pred             CCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCc--eeeecc-CCCccccccEEEEEEcCCCCEEEEEcCCCEEEEEECC
Confidence            5688899999999999999999999999999544  677777 776     49999999999999999999999999988


Q ss_pred             CCeEEEEecCCCCeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEe----cCCCCceEEEEEccCC
Q 021399           83 TGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLIL----KGPQGRINRAVWGPLN  158 (313)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~i~~~~~~~~~  158 (313)
                      +++..      .+          +                             -..+..+    .+|.+.|.+++|+|++
T Consensus       160 ~~~l~------~~----------~-----------------------------~i~l~ti~~~~~gh~~~V~sVawSPdg  194 (588)
T 2j04_A          160 KNSEN------TP----------E-----------------------------FYFESSIRLSDAGSKDWVTHIVWYEDV  194 (588)
T ss_dssp             CCTTT------CC----------C-----------------------------CEEEEEEECSCTTCCCCEEEEEEETTE
T ss_pred             CCccc------cc----------c-----------------------------ceeeeeeecccccccccEEEEEEcCCc
Confidence            75310      00          0                             0001111    4577899999999998


Q ss_pred             CEEEEeeCCCeEEEEECCCCcee---eecccccCceeceEEEEECCCCCEEEEeeCCCcEEEEECCCCcE-EEEEecCCc
Q 021399          159 RTIISAGEDAIVRIWDTETGKLL---KESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLEL-IKTYVTERP  234 (313)
Q Consensus       159 ~~i~t~~~d~~i~lwd~~~~~~~---~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~-~~~~~~~~~  234 (313)
                        +++++.|+.|++||+..+...   +++.  .+|...|.+++|+  |+.||+++ |++|++||+.+++. ...+.+...
T Consensus       195 --Laass~D~tVrlWd~~~~~~~~~~~tL~--~~h~~~V~svaFs--g~~LASa~-~~tIkLWd~~~~~~~~~~~gh~~~  267 (588)
T 2j04_A          195 --LVAALSNNSVFSMTVSASSHQPVSRMIQ--NASRRKITDLKIV--DYKVVLTC-PGYVHKIDLKNYSISSLKTGSLEN  267 (588)
T ss_dssp             --EEEEETTCCEEEECCCSSSSCCCEEEEE--CCCSSCCCCEEEE--TTEEEEEC-SSEEEEEETTTTEEEEEECSCCSC
T ss_pred             --EEEEeCCCeEEEEECCCCccccceeeec--ccccCcEEEEEEE--CCEEEEEe-CCeEEEEECCCCeEEEEEcCCCce
Confidence              888999999999999876632   2221  2588899999999  68899997 79999999998887 444356678


Q ss_pred             eeEEEe--ccCCCEEEEcccccCceeEeecc----CCC------ceeeeeeehhhhhhhccccccccceeEEEECCCCCe
Q 021399          235 VNAVTM--SPLLDHVVLGGGQDASAVTTTDH----RAG------KFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKR  302 (313)
Q Consensus       235 ~~~~~~--~p~~~~~~~~~~~~~~~~~~~~~----~~~------~~~~~~~~~~~~~~~~~~~~h~~~V~~~~fspdgk~  302 (313)
                      +..++|  +|++..++++.-+.. -++..|.    ..+      ...+++|+.... .+..+.+ ...|++++|||||+.
T Consensus       268 V~~va~~~s~d~~~La~a~edG~-klw~~d~~~~spd~~l~a~~d~~v~lW~~~g~-~l~~~~~-~~~I~~va~SPdG~~  344 (588)
T 2j04_A          268 FHIIPLNHEKESTILLMSNKTSY-KVLLEDELHVTADNIIAPYLEKKFKKWSTIWN-EFNNYET-TLVIHGISLSPDGYS  344 (588)
T ss_dssp             CCEEEETTCSSCEEEEECSSCEE-EEEESSSEEEECCCSSHHHHHHHHHHTTTTTT-SSSSSCC-EEEEEEEEECTTSSE
T ss_pred             EEEEEeeeCCCCCEEEEEcCCCC-EEEeeccEEECCCceEEEEcCCEEEEEECCCC-ceeeecc-ceEEEEEEECCCCCE
Confidence            999999  999877766653322 2222210    000      112455654322 3445544 778999999999999


Q ss_pred             eEEEE
Q 021399          303 YGFLL  307 (313)
Q Consensus       303 ~~~~~  307 (313)
                      +|...
T Consensus       345 lA~~~  349 (588)
T 2j04_A          345 IAIVY  349 (588)
T ss_dssp             EEEEE
T ss_pred             EEEEE
Confidence            88754

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=100.00  E-value=6.9e-31  Score=227.61  Aligned_cols=208  Identities=9%  Similarity=0.016  Sum_probs=158.4

Q ss_pred             cccccceeEEEEccCCCEEEEe--eCCCCeEEEeCCCCcEEEEecCCCCceEEEEECCCCCeEEEeeCCCcEEEEECCCC
Q 021399            7 KGHERPLTYLKYNKDGDLLFSC--AKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETG   84 (313)
Q Consensus         7 ~~h~~~v~~~~fs~~g~~l~s~--s~d~~i~iw~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~v~vWd~~~~   84 (313)
                      ..+...+.+++|||||++|+++  +.|++|+|||+++++.+.+++ |.+.|.+++|+|||+++++++.| .+++|+..++
T Consensus       130 ~~~~~~~~~v~fSpDg~~la~as~~~d~~i~iwd~~~~~~~~~~~-~~~~V~~v~fspdg~~l~s~s~~-~~~~~~~~~~  207 (365)
T 4h5i_A          130 TNADDYTKLVYISREGTVAAIASSKVPAIMRIIDPSDLTEKFEIE-TRGEVKDLHFSTDGKVVAYITGS-SLEVISTVTG  207 (365)
T ss_dssp             CCTTCCEEEEEECTTSSCEEEEESCSSCEEEEEETTTTEEEEEEE-CSSCCCEEEECTTSSEEEEECSS-CEEEEETTTC
T ss_pred             CCcccCEEEEEEcCCCCEEEEEECCCCCEEEEeECCCCcEEEEeC-CCCceEEEEEccCCceEEeccce-eEEEEEeccC
Confidence            3455668899999999998754  478999999999999988886 77899999999999999998855 5666666666


Q ss_pred             eEEEEec---CCCCeeEEEeecCCeEEEEEC-CCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEccCCCE
Q 021399           85 AQLFTFN---FDSPARSVDFAVGDKLAVITT-DPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRT  160 (313)
Q Consensus        85 ~~~~~~~---~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~  160 (313)
                      +.+....   ....+..+.|+|++..++... +....  ..+..+++..  ..........+.+|...|.+++|+|++++
T Consensus       208 ~~~~~~~~~~~~~~v~~v~fspdg~~l~~~s~d~~~~--~~i~~~~~~~--~~~~~~~~~~~~~~~~~V~~~~~Spdg~~  283 (365)
T 4h5i_A          208 SCIARKTDFDKNWSLSKINFIADDTVLIAASLKKGKG--IVLTKISIKS--GNTSVLRSKQVTNRFKGITSMDVDMKGEL  283 (365)
T ss_dssp             CEEEEECCCCTTEEEEEEEEEETTEEEEEEEESSSCC--EEEEEEEEET--TEEEEEEEEEEESSCSCEEEEEECTTSCE
T ss_pred             cceeeeecCCCCCCEEEEEEcCCCCEEEEEecCCcce--eEEeeccccc--ceecceeeeeecCCCCCeEeEEECCCCCc
Confidence            6554332   234577888999877665543 21100  0111222211  00011223456788999999999999999


Q ss_pred             EEEeeCCCeEEEEECCCCceeeecccccCceeceEEEEECCCCCEEEEeeCCCcEEEEECCC
Q 021399          161 IISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDART  222 (313)
Q Consensus       161 i~t~~~d~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~dg~i~iwd~~~  222 (313)
                      ||+|+.|+.|+|||+++++++.++.  .+|...|++++|+|||++|||||.|++|||||+..
T Consensus       284 lasgs~D~~V~iwd~~~~~~~~~~~--~gH~~~V~~v~fSpdg~~laS~S~D~tvrvw~ip~  343 (365)
T 4h5i_A          284 AVLASNDNSIALVKLKDLSMSKIFK--QAHSFAITEVTISPDSTYVASVSAANTIHIIKLPL  343 (365)
T ss_dssp             EEEEETTSCEEEEETTTTEEEEEET--TSSSSCEEEEEECTTSCEEEEEETTSEEEEEECCT
T ss_pred             eEEEcCCCEEEEEECCCCcEEEEec--CcccCCEEEEEECCCCCEEEEEeCCCeEEEEEcCC
Confidence            9999999999999999998877643  47999999999999999999999999999999864

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=100.00  E-value=8.1e-32  Score=233.96  Aligned_cols=194  Identities=14%  Similarity=0.149  Sum_probs=154.9

Q ss_pred             ccccccccceeEEEEccCCCEEEEeeCCCCeEEEeCCCCc---EEEEecCCCCceEEEEECCCCCeEEEeeCCCcEEEEE
Q 021399            4 ILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGE---RLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWN   80 (313)
Q Consensus         4 ~~l~~h~~~v~~~~fs~~g~~l~s~s~d~~i~iw~~~~~~---~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~v~vWd   80 (313)
                      ..+.+|.+.|.+++|+|++++|++++.|+.|++||+.+++   ....+.+|...|.+++|+|++++|++++.|++|++||
T Consensus        49 ~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd  128 (377)
T 3dwl_C           49 RTFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEKRPDGTWKQTLVLLRLNRAATFVRWSPNEDKFAVGSGARVISVCY  128 (377)
T ss_dssp             CCBCCCSSCEEEEEECTTTCCEEEEETTSSEEEC------CCCCEEECCCCSSCEEEEECCTTSSCCEEEESSSCEEECC
T ss_pred             EEEecCCceEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCCceeeeeEecccCCceEEEEECCCCCEEEEEecCCeEEEEE
Confidence            4688999999999999999999999999999999999887   6778889999999999999999999999999999999


Q ss_pred             CCCCeEEEEecCCCCeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecC-CCCceEEEEEccCCC
Q 021399           81 VETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKG-PQGRINRAVWGPLNR  159 (313)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~~~~~~  159 (313)
                      +++++...                                                 ....+.. |...|.++.|+|+++
T Consensus       129 ~~~~~~~~-------------------------------------------------~~~~~~~~h~~~v~~~~~~~~~~  159 (377)
T 3dwl_C          129 FEQENDWW-------------------------------------------------VSKHLKRPLRSTILSLDWHPNNV  159 (377)
T ss_dssp             C-----CC-------------------------------------------------CCEEECSSCCSCEEEEEECTTSS
T ss_pred             ECCcccce-------------------------------------------------eeeEeecccCCCeEEEEEcCCCC
Confidence            87653200                                                 0112233 778899999999999


Q ss_pred             EEEEeeCCCeEEEEECCC------------------CceeeecccccCceeceEEEEECCCCCEEEEeeCCCcEEEEECC
Q 021399          160 TIISAGEDAIVRIWDTET------------------GKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDAR  221 (313)
Q Consensus       160 ~i~t~~~d~~i~lwd~~~------------------~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~dg~i~iwd~~  221 (313)
                      ++++++.|+.|++||+..                  ++++..+    +|...|.+++|+|++++|++++.||.|++||++
T Consensus       160 ~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~v~~~~~sp~~~~l~~~~~d~~i~iwd~~  235 (377)
T 3dwl_C          160 LLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY----PSGGWVHAVGFSPSGNALAYAGHDSSVTIAYPS  235 (377)
T ss_dssp             EEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC----CCSSSEEEEEECTTSSCEEEEETTTEEC-CEEC
T ss_pred             EEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc----cCCceEEEEEECCCCCEEEEEeCCCcEEEEECC
Confidence            999999999999999853                  2233222    688999999999999999999999999999999


Q ss_pred             CCcE----EEEEe-cCCceeEEEeccCCCEEEEc
Q 021399          222 TLEL----IKTYV-TERPVNAVTMSPLLDHVVLG  250 (313)
Q Consensus       222 ~~~~----~~~~~-~~~~~~~~~~~p~~~~~~~~  250 (313)
                      ++++    +..+. +...+.+++|+|++..++++
T Consensus       236 ~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~  269 (377)
T 3dwl_C          236 APEQPPRALITVKLSQLPLRSLLWANESAIVAAG  269 (377)
T ss_dssp             STTSCEEECCCEECSSSCEEEEEEEETTEEEEEE
T ss_pred             CCCCcceeeEeecCCCCceEEEEEcCCCCEEEEE
Confidence            9876    55554 45679999999998765543

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=100.00  E-value=5.8e-31  Score=229.90  Aligned_cols=229  Identities=15%  Similarity=0.189  Sum_probs=185.8

Q ss_pred             ccccccccceeEEEEccC----C---CEEEEeeCCCCeEEEeCCCCcE-----EEEecCC-----CCceEEEEEC----C
Q 021399            4 ILMKGHERPLTYLKYNKD----G---DLLFSCAKDHTPTVWFADNGER-----LGTYRGH-----NGAVWCCDVS----R   62 (313)
Q Consensus         4 ~~l~~h~~~v~~~~fs~~----g---~~l~s~s~d~~i~iw~~~~~~~-----~~~~~~H-----~~~V~~~~~~----~   62 (313)
                      ..+.+|...|.+++|+|+    |   ++|++++.|+.|++|++.+++.     +..+.+|     ...|.+++|+    |
T Consensus        56 ~~~~~h~~~v~~~~~~~~~~~~g~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  135 (397)
T 1sq9_A           56 YSHFVHKSGLHHVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDR  135 (397)
T ss_dssp             EEEECCTTCEEEEEEEEEEETTTEEEEEEEEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC--
T ss_pred             eEEecCCCcEEEEEEecccccCCccccEEEEEcCCCCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCC
Confidence            467789999999999999    9   9999999999999999998886     8889999     5999999999    9


Q ss_pred             CCCe-EEEeeCCCcEEEEECCC------CeEEE-----Ee--------cCCCCeeEEEeecCCeEEEEECCCceeccccc
Q 021399           63 DSMT-LITGSADQTAKLWNVET------GAQLF-----TF--------NFDSPARSVDFAVGDKLAVITTDPFMELNSAI  122 (313)
Q Consensus        63 ~~~~-l~s~s~D~~v~vWd~~~------~~~~~-----~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  122 (313)
                      +++. |++++.|+.|++||+.+      ++.+.     .+        .....+.++.|.+++ .++....     ++.+
T Consensus       136 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~-----dg~i  209 (397)
T 1sq9_A          136 LLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFN-----NGTV  209 (397)
T ss_dssp             --CEEEEEEETTSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECT-----TSEE
T ss_pred             CCceEEEEEeCCCcEEEEeCCccccccccceeeccCcceeeeeeccccCCCCCceEEEECCCc-eEEEEeC-----CCcE
Confidence            9999 99999999999999987      44332     33        135678889999877 4444332     2223


Q ss_pred             eeeeeeeCCCCCCCceEEEecC---C---CCceEEEEEccCCCEEEEeeCC---CeEEEEECCCCceeeecccc------
Q 021399          123 HVKRIARDPADQGGESVLILKG---P---QGRINRAVWGPLNRTIISAGED---AIVRIWDTETGKLLKESDKE------  187 (313)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~---~---~~~i~~~~~~~~~~~i~t~~~d---~~i~lwd~~~~~~~~~~~~~------  187 (313)
                      .++++.      ....+..+..   |   ...+.++.|+|+++++++++.|   +.|++||+.+++.+..+...      
T Consensus       210 ~i~d~~------~~~~~~~~~~~~~h~~~~~~i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~  283 (397)
T 1sq9_A          210 QISELS------TLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQA  283 (397)
T ss_dssp             EEEETT------TTEEEEEEECCC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC------
T ss_pred             EEEECC------CCceeEEEeccccccccCCccceEEECCCCCEEEEEecCCCCceEEEEECCCCcccceeccCcccccc
Confidence            333321      2456666777   8   8999999999999999999999   99999999988877665420      


Q ss_pred             ----cCceeceEEEEECCCCCEEEEeeCCCcEEEEECCCCcEEEEEe------c----------------CCceeEEEec
Q 021399          188 ----TGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYV------T----------------ERPVNAVTMS  241 (313)
Q Consensus       188 ----~~h~~~v~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~------~----------------~~~~~~~~~~  241 (313)
                          ..|...|.+++|+|++++|++++.||.|++||+++++++..+.      .                ...+.+++|+
T Consensus       284 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~  363 (397)
T 1sq9_A          284 SLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFL  363 (397)
T ss_dssp             --CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEE
T ss_pred             cccccccCCcEEEEEECCCCCEEEEEeCCCeEEEEEcCCCceeEEEecccCcccchhhhhccccccccccCCceeEEEec
Confidence                0188899999999999999999999999999999999998887      3                5679999999


Q ss_pred             cCC
Q 021399          242 PLL  244 (313)
Q Consensus       242 p~~  244 (313)
                      |++
T Consensus       364 ~~g  366 (397)
T 1sq9_A          364 KKG  366 (397)
T ss_dssp             CTT
T ss_pred             ccc
Confidence            998

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=100.00  E-value=1.5e-29  Score=224.78  Aligned_cols=261  Identities=29%  Similarity=0.486  Sum_probs=201.1

Q ss_pred             cccccccccceeEEEEccCCCEEEEeeCCCCeEEEeCCCCcEEEEecCCCCceEEEEECCCCCeEEEeeCCCcEEEEECC
Q 021399            3 PILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVE   82 (313)
Q Consensus         3 ~~~l~~h~~~v~~~~fs~~g~~l~s~s~d~~i~iw~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~v~vWd~~   82 (313)
                      +..+.+|.+.|.. +++++|++|++|+.||.|++||..+++.+.++.+|.+.|++++|+  ++.+++|+.||+|++||+.
T Consensus       111 ~~~l~~h~~~v~~-~~~~~g~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~~~dg~i~vwd~~  187 (445)
T 2ovr_B          111 PKVLKGHDDHVIT-CLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMR--DNIIISGSTDRTLKVWNAE  187 (445)
T ss_dssp             CEEEECSTTSCEE-EEEEETTEEEEEETTSCEEEEETTTCCEEEECCCCSSCEEEEEEE--TTEEEEEETTSCEEEEETT
T ss_pred             eEEecccCCCcEE-EEEEcCCEEEEEECCCcEEEEECCCCcEEEEEcCCCCCEEEEEec--CCEEEEEeCCCeEEEEECC
Confidence            4578999998643 355679999999999999999999999999999999999999997  5699999999999999999


Q ss_pred             CCeEEEEec-CCCCeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEccCCCEE
Q 021399           83 TGAQLFTFN-FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTI  161 (313)
Q Consensus        83 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i  161 (313)
                      +++.+..+. +...+..+.+. +..++.+..+..      +.++++.      .+..+..+.+|...+.++.+  +++.+
T Consensus       188 ~~~~~~~~~~h~~~v~~~~~~-~~~l~s~s~dg~------i~~wd~~------~~~~~~~~~~~~~~v~~~~~--~~~~l  252 (445)
T 2ovr_B          188 TGECIHTLYGHTSTVRCMHLH-EKRVVSGSRDAT------LRVWDIE------TGQCLHVLMGHVAAVRCVQY--DGRRV  252 (445)
T ss_dssp             TTEEEEEECCCSSCEEEEEEE-TTEEEEEETTSE------EEEEESS------SCCEEEEEECCSSCEEEEEE--CSSCE
T ss_pred             cCcEEEEECCCCCcEEEEEec-CCEEEEEeCCCE------EEEEECC------CCcEEEEEcCCcccEEEEEE--CCCEE
Confidence            998887765 45567777774 445555554433      3333332      24456677889999999988  67889


Q ss_pred             EEeeCCCeEEEEECCCCceeeecccccCceeceEEEEECCCCCEEEEeeCCCcEEEEECCCCcEEEEEec-CCceeEEEe
Q 021399          162 ISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVT-ERPVNAVTM  240 (313)
Q Consensus       162 ~t~~~d~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~-~~~~~~~~~  240 (313)
                      ++++.|+.|++||+.+++.+..+.   +|...+.++++  ++.++++++.|+.|++||+++++++..+.. ...+.++++
T Consensus       253 ~~~~~dg~i~iwd~~~~~~~~~~~---~~~~~v~~~~~--~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~  327 (445)
T 2ovr_B          253 VSGAYDFMVKVWDPETETCLHTLQ---GHTNRVYSLQF--DGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMEL  327 (445)
T ss_dssp             EEEETTSCEEEEEGGGTEEEEEEC---CCSSCEEEEEE--CSSEEEEEETTSCEEEEETTTCCEEEEECCCCSCEEEEEE
T ss_pred             EEEcCCCEEEEEECCCCcEeEEec---CCCCceEEEEE--CCCEEEEEeCCCeEEEEECCCCCEEEEEcCCcccEEEEEE
Confidence            999999999999999888776654   68889999998  789999999999999999999999888753 445666665


Q ss_pred             ccCCCEEEEcccccCceeEeeccCCCceeeeeeehhhhhhhccccc---cccceeEEEECCCCCeeE
Q 021399          241 SPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKG---HFGPINALAFNPDGKRYG  304 (313)
Q Consensus       241 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---h~~~V~~~~fspdgk~~~  304 (313)
                      +  ++.++++ +.++ .            +++||..+++.+..+.+   |..+|++++|++  +.++
T Consensus       328 ~--~~~l~~~-~~dg-~------------i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~  376 (445)
T 2ovr_B          328 K--DNILVSG-NADS-T------------VKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNK--NFVI  376 (445)
T ss_dssp             E--TTEEEEE-ETTS-C------------EEEEETTTCCEEEEECSTTSCSSCEEEEEECS--SEEE
T ss_pred             e--CCEEEEE-eCCC-e------------EEEEECCCCcEEEEEccCCCCCCCEEEEEECC--CEEE
Confidence            4  4555544 3332 3            34555544444444444   899999999964  4544

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=100.00  E-value=6.9e-30  Score=220.51  Aligned_cols=238  Identities=8%  Similarity=0.033  Sum_probs=169.0

Q ss_pred             cccccccceeEEEEccCCCEEEEeeCCCCeEEEeCCCCcEEEEecCCCCceEEEEECCCCCeE-EEeeCCCcEEEEECCC
Q 021399            5 LMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTL-ITGSADQTAKLWNVET   83 (313)
Q Consensus         5 ~l~~h~~~v~~~~fs~~g~~l~s~s~d~~i~iw~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l-~s~s~D~~v~vWd~~~   83 (313)
                      .+.+|...|.+++|+|||++|++|+.|+ ++||+.++++.......+  .+..+++.++++.+ ++++.|++|++||+.+
T Consensus        14 ~~~~h~~~V~~v~fs~dg~~la~g~~~~-~~iw~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~d~~v~iWd~~~   90 (355)
T 3vu4_A           14 PENHVSNPVTDYEFNQDQSCLILSTLKS-FEIYNVHPVAHIMSQEMR--HLSKVRMLHRTNYVAFVTGVKEVVHIWDDVK   90 (355)
T ss_dssp             -----CCCCCEEEECTTSSEEEEECSSE-EEEEEETTEEEEEEEECS--CCCEEEECTTSSEEEEECSSTTEEEEEETTT
T ss_pred             ccccCCCceEEEEECCCCCEEEEEcCCE-EEEEecCCcceeeeeecC--CeEEEEEcCCCCEEEEEECCccEEEEEECCC
Confidence            4588999999999999999999998775 789999888766544332  47778888887766 6788899999999999


Q ss_pred             CeEEEEecCCCCeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEccCCCEEEE
Q 021399           84 GAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIIS  163 (313)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~t  163 (313)
                      ++.+..+.+..++..+.+.++...++ . +      ..+.++++....     ..+..+..   +...+++++  ..++.
T Consensus        91 ~~~~~~~~~~~~v~~v~~~~~~~~~~-~-~------~~i~i~d~~~~~-----~~~~~~~~---~~~~~~~s~--~~la~  152 (355)
T 3vu4_A           91 KQDVSRIKVDAPVKDLFLSREFIVVS-Y-G------DVISVFKFGNPW-----KRITDDIR---FGGVCEFSN--GLLVY  152 (355)
T ss_dssp             TEEEEEEECSSCEEEEEECSSEEEEE-E-T------TEEEEEESSTTC-----CBSSCCEE---EEEEEEEET--TEEEE
T ss_pred             CcEEEEEECCCceEEEEEcCCEEEEE-E-c------CEEEEEECCCCc-----eeeEEecc---CCceEEEEc--cEEEE
Confidence            99988888878888888876543332 2 2      223334332210     00001111   233445566  55665


Q ss_pred             --eeCCCeEEEEECCCCcee------------ee-cccccCceeceEEEEECCCCCEEEEeeCCCc-EEEEECCCCcEEE
Q 021399          164 --AGEDAIVRIWDTETGKLL------------KE-SDKETGHKKTITSLAKAADGSHFLTGSLDKS-AKLWDARTLELIK  227 (313)
Q Consensus       164 --~~~d~~i~lwd~~~~~~~------------~~-~~~~~~h~~~v~~~~~s~~~~~l~s~s~dg~-i~iwd~~~~~~~~  227 (313)
                        |+.||.|++||+.++...            .. .....+|...|++++|+|+|++|++|+.|++ |++||+++++++.
T Consensus       153 ~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~s~d~~~v~iwd~~~~~~~~  232 (355)
T 3vu4_A          153 SNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVATCSQDGTIIRVFKTEDGVLVR  232 (355)
T ss_dssp             EESSCTTCEEEEECCC------------------CCEEECCCSSCEEEEEECTTSSEEEEEETTCSEEEEEETTTCCEEE
T ss_pred             eCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCCCEEEEEeCCCCEEEEEECCCCcEEE
Confidence              689999999999875410            00 1223479999999999999999999999998 9999999999999


Q ss_pred             EEe---cCCceeEEEeccCCCEEEEcccccCceeEeeccCC
Q 021399          228 TYV---TERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRA  265 (313)
Q Consensus       228 ~~~---~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~  265 (313)
                      ++.   +...+.+++|+|++..+++++.  +..+.+||.+.
T Consensus       233 ~~~~g~h~~~v~~~~~s~~~~~l~s~s~--d~~v~iw~~~~  271 (355)
T 3vu4_A          233 EFRRGLDRADVVDMKWSTDGSKLAVVSD--KWTLHVFEIFN  271 (355)
T ss_dssp             EEECTTCCSCEEEEEECTTSCEEEEEET--TCEEEEEESSC
T ss_pred             EEEcCCCCCcEEEEEECCCCCEEEEEEC--CCEEEEEEccC
Confidence            987   6778999999999988776543  34566666544

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=99.98  E-value=3.6e-29  Score=213.83  Aligned_cols=231  Identities=21%  Similarity=0.298  Sum_probs=185.3

Q ss_pred             ccccccccceeEEEEccCCCEEEEeeCCCCeEEEeCCCCcEEEEecCCCCceEEEEECCCCCeEEEeeCCCcEEEEECCC
Q 021399            4 ILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVET   83 (313)
Q Consensus         4 ~~l~~h~~~v~~~~fs~~g~~l~s~s~d~~i~iw~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~v~vWd~~~   83 (313)
                      ..+++|...|.+++|+|+|++|++++.|+.|++|+............+...+....++++++.+++++.|+.+++||+..
T Consensus        80 ~~l~~h~~~V~~~~~s~dg~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~  159 (340)
T 4aow_A           80 RALRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLG  159 (340)
T ss_dssp             EEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTS
T ss_pred             EEEeCCCCCEEEEEECCCCCEEEEEcccccceEEeecccceeeeecCCCCceeEEEEeecCccceeecCCCeEEEEEeCC
Confidence            36789999999999999999999999999999999999999989999999999999999999999999999999999987


Q ss_pred             CeEEEEec--CCCCeeEEEeecCC--eE-EEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEccCC
Q 021399           84 GAQLFTFN--FDSPARSVDFAVGD--KL-AVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLN  158 (313)
Q Consensus        84 ~~~~~~~~--~~~~~~~~~~~~~~--~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~  158 (313)
                      ........  ....+..+.+.+..  .+ +....+..      +.++++      .....+..+.+|.+.|.+++|+|++
T Consensus       160 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~~d~~------i~i~d~------~~~~~~~~~~~h~~~v~~~~~s~~~  227 (340)
T 4aow_A          160 VCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKL------VKVWNL------ANCKLKTNHIGHTGYLNTVTVSPDG  227 (340)
T ss_dssp             CEEEEECSSSCSSCEEEEEECSCSSSCEEEEEETTSC------EEEEET------TTTEEEEEECCCSSCEEEEEECTTS
T ss_pred             CceEEEEeccccCcccceEEccCCCCcEEEEEcCCCE------EEEEEC------CCCceeeEecCCCCcEEEEEECCCC
Confidence            65443322  24456667776532  22 22223322      223322      2345667788999999999999999


Q ss_pred             CEEEEeeCCCeEEEEECCCCceeeecccccCceeceEEEEECCCCCEEEEeeCCCcEEEEECCCCcEEEEEe--------
Q 021399          159 RTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYV--------  230 (313)
Q Consensus       159 ~~i~t~~~d~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~--------  230 (313)
                      ++|++|+.|+.|++||+.+.+.+..+.    +...+.+++++|++. +++++.|+.|++||++++.++..+.        
T Consensus       228 ~~l~s~s~Dg~i~iwd~~~~~~~~~~~----~~~~v~~~~~~~~~~-~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~  302 (340)
T 4aow_A          228 SLCASGGKDGQAMLWDLNEGKHLYTLD----GGDIINALCFSPNRY-WLCAATGPSIKIWDLEGKIIVDELKQEVISTSS  302 (340)
T ss_dssp             SEEEEEETTCEEEEEETTTTEEEEEEE----CSSCEEEEEECSSSS-EEEEEETTEEEEEETTTTEEEEEECCC------
T ss_pred             CEEEEEeCCCeEEEEEeccCceeeeec----CCceEEeeecCCCCc-eeeccCCCEEEEEECCCCeEEEeccccceeeec
Confidence            999999999999999999988776653    456799999999876 5667789999999999988776653        


Q ss_pred             --cCCceeEEEeccCCCEEEEcc
Q 021399          231 --TERPVNAVTMSPLLDHVVLGG  251 (313)
Q Consensus       231 --~~~~~~~~~~~p~~~~~~~~~  251 (313)
                        +...+.+++|+|++..+++++
T Consensus       303 ~~h~~~v~~l~~s~dg~~l~sgs  325 (340)
T 4aow_A          303 KAEPPQCTSLAWSADGQTLFAGY  325 (340)
T ss_dssp             -CCCCCEEEEEECTTSSEEEEEE
T ss_pred             cCCCCCEEEEEECCCCCEEEEEe
Confidence              234689999999998877654

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=99.98  E-value=9.7e-31  Score=226.66  Aligned_cols=246  Identities=13%  Similarity=0.119  Sum_probs=181.5

Q ss_pred             ccccccccceeEEEEccCCCEEEEe-----------eCCCCeEEEeCCCCcE-E---EEe-----cCCCCceEEEEECCC
Q 021399            4 ILMKGHERPLTYLKYNKDGDLLFSC-----------AKDHTPTVWFADNGER-L---GTY-----RGHNGAVWCCDVSRD   63 (313)
Q Consensus         4 ~~l~~h~~~v~~~~fs~~g~~l~s~-----------s~d~~i~iw~~~~~~~-~---~~~-----~~H~~~V~~~~~~~~   63 (313)
                      +.|.+|.+.|.+++++  ++.+++|           +.|+.+|+|++.+... +   ...     ..++..+.+++|+||
T Consensus        67 ~~l~~~~~~v~s~~~~--~~~~~~g~~~~~~~l~s~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSpD  144 (365)
T 4h5i_A           67 FALEDNDDSPTAIDAS--KGIILVGCNENSTKITQGKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISRE  144 (365)
T ss_dssp             EECCTTSCCCCEEEEE--TTEEEEECCCCHHHHHHTSCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECTT
T ss_pred             EEccCCCCceEEEEeC--CCEEEEEECCCccEEEEecCCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcCC
Confidence            4678899999888765  5566654           4678899998775532 1   111     235567899999999


Q ss_pred             CCeEE--EeeCCCcEEEEECCCCeEEEEecCCCCeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEE
Q 021399           64 SMTLI--TGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLI  141 (313)
Q Consensus        64 ~~~l~--s~s~D~~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  141 (313)
                      |++++  +++.|++|+|||+.+++.+..+.....+.++.|+|+++.++...+.....      +..    ..........
T Consensus       145 g~~la~as~~~d~~i~iwd~~~~~~~~~~~~~~~V~~v~fspdg~~l~s~s~~~~~~------~~~----~~~~~~~~~~  214 (365)
T 4h5i_A          145 GTVAAIASSKVPAIMRIIDPSDLTEKFEIETRGEVKDLHFSTDGKVVAYITGSSLEV------IST----VTGSCIARKT  214 (365)
T ss_dssp             SSCEEEEESCSSCEEEEEETTTTEEEEEEECSSCCCEEEECTTSSEEEEECSSCEEE------EET----TTCCEEEEEC
T ss_pred             CCEEEEEECCCCCEEEEeECCCCcEEEEeCCCCceEEEEEccCCceEEeccceeEEE------EEe----ccCcceeeee
Confidence            99876  45579999999999999998888888899999999888777665432211      110    0011111223


Q ss_pred             ecCCCCceEEEEEccCCCEEEEeeCCC----eEEEEECCCCcee-eecccccCceeceEEEEECCCCCEEEEeeCCCcEE
Q 021399          142 LKGPQGRINRAVWGPLNRTIISAGEDA----IVRIWDTETGKLL-KESDKETGHKKTITSLAKAADGSHFLTGSLDKSAK  216 (313)
Q Consensus       142 ~~~~~~~i~~~~~~~~~~~i~t~~~d~----~i~lwd~~~~~~~-~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~dg~i~  216 (313)
                      ..+|...+..+.|+|+++.+++++.|+    .+++||+...... .......+|...|++++|+|||++||+|+.|++|+
T Consensus       215 ~~~~~~~v~~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~~lasgs~D~~V~  294 (365)
T 4h5i_A          215 DFDKNWSLSKINFIADDTVLIAASLKKGKGIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDMKGELAVLASNDNSIA  294 (365)
T ss_dssp             CCCTTEEEEEEEEEETTEEEEEEEESSSCCEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECTTSCEEEEEETTSCEE
T ss_pred             cCCCCCCEEEEEEcCCCCEEEEEecCCcceeEEeecccccceecceeeeeecCCCCCeEeEEECCCCCceEEEcCCCEEE
Confidence            456778899999999999999999887    6889998665431 11222346888999999999999999999999999


Q ss_pred             EEECCCCcEEEEEe--cCCceeEEEeccCCCEEEEcccccCceeEeecc
Q 021399          217 LWDARTLELIKTYV--TERPVNAVTMSPLLDHVVLGGGQDASAVTTTDH  263 (313)
Q Consensus       217 iwd~~~~~~~~~~~--~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~  263 (313)
                      |||+++++++.++.  +...|.+++|+|++..++.++ .| +.+.+|+.
T Consensus       295 iwd~~~~~~~~~~~~gH~~~V~~v~fSpdg~~laS~S-~D-~tvrvw~i  341 (365)
T 4h5i_A          295 LVKLKDLSMSKIFKQAHSFAITEVTISPDSTYVASVS-AA-NTIHIIKL  341 (365)
T ss_dssp             EEETTTTEEEEEETTSSSSCEEEEEECTTSCEEEEEE-TT-SEEEEEEC
T ss_pred             EEECCCCcEEEEecCcccCCEEEEEECCCCCEEEEEe-CC-CeEEEEEc
Confidence            99999999998874  567899999999999876643 33 33444443

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=99.98  E-value=2.3e-31  Score=226.17  Aligned_cols=199  Identities=24%  Similarity=0.343  Sum_probs=150.2

Q ss_pred             cccccccceeEEEEcc--CCCEEEEeeCCCCeEEEeCCCC--cEEEEecCCCCceEEEEECCC--CCeEEEeeCCCcEEE
Q 021399            5 LMKGHERPLTYLKYNK--DGDLLFSCAKDHTPTVWFADNG--ERLGTYRGHNGAVWCCDVSRD--SMTLITGSADQTAKL   78 (313)
Q Consensus         5 ~l~~h~~~v~~~~fs~--~g~~l~s~s~d~~i~iw~~~~~--~~~~~~~~H~~~V~~~~~~~~--~~~l~s~s~D~~v~v   78 (313)
                      .|++|.+.|.+++|+|  ++++|+||+.|++|++||..++  +...++.+|...|.+++|+|+  +.+|++|+.|++|++
T Consensus        52 ~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~l  131 (316)
T 3bg1_A           52 DLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWREENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISL  131 (316)
T ss_dssp             EEECCSSCEEEEEECCGGGSSCEEEEETTSCEEEECCSSSCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEE
T ss_pred             EEcCCCccEEEEEeCCCCCCCEEEEEECCCEEEEEECCCCcceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEE
Confidence            5789999999999986  4899999999999999999887  466788999999999999998  789999999999999


Q ss_pred             EECCCCeEEEEecCCCCeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEccC-
Q 021399           79 WNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPL-  157 (313)
Q Consensus        79 Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-  157 (313)
                      ||++++.......                                                 .+.+|...+..+.|+|+ 
T Consensus       132 wd~~~~~~~~~~~-------------------------------------------------~~~~h~~~v~~~~~~~~~  162 (316)
T 3bg1_A          132 LTYTGEGQWEVKK-------------------------------------------------INNAHTIGCNAVSWAPAV  162 (316)
T ss_dssp             EEECSSSCEEECC-------------------------------------------------BTTSSSSCBCCCEECCCC
T ss_pred             EecCCCCCcceee-------------------------------------------------eeccccCCcceEEEcccc
Confidence            9987653211000                                                 00112222222333322 


Q ss_pred             ----------------CCEEEEeeCCCeEEEEECCCCceeeecccccCceeceEEEEECCCC----CEEEEeeCCCcEEE
Q 021399          158 ----------------NRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADG----SHFLTGSLDKSAKL  217 (313)
Q Consensus       158 ----------------~~~i~t~~~d~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~----~~l~s~s~dg~i~i  217 (313)
                                      +++|++|+.|+.|++||++............+|...|++++|+|++    .+|++++.|++|++
T Consensus       163 ~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h~~~V~~v~~sp~~~~~~~~las~s~D~~v~i  242 (316)
T 3bg1_A          163 VPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFI  242 (316)
T ss_dssp             CC------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBCCSSCEEEEECCCCSSCSCCEEEEEETTCEEEE
T ss_pred             CCccccccccccCccccceEEEecCCCeEEEEEeCCCCccceeeecccCCCceEEEEecCCCCCCCceEEEEcCCCeEEE
Confidence                            4689999999999999987542211222234799999999999987    78999999999999


Q ss_pred             EECCCCc----EEEEE-ecCCceeEEEeccCCCEEEEccc
Q 021399          218 WDARTLE----LIKTY-VTERPVNAVTMSPLLDHVVLGGG  252 (313)
Q Consensus       218 wd~~~~~----~~~~~-~~~~~~~~~~~~p~~~~~~~~~~  252 (313)
                      ||+++..    ....+ .+...+.+++|+|++..+++++.
T Consensus       243 w~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~las~~~  282 (316)
T 3bg1_A          243 WTCDDASSNTWSPKLLHKFNDVVWHVSWSITANILAVSGG  282 (316)
T ss_dssp             EECSSTTCCCCBCCEEEECSSCEEEEEECTTTCCEEEEES
T ss_pred             EEccCccccchhhhhhhcCCCcEEEEEEcCCCCEEEEEcC
Confidence            9987621    11112 24668999999999988776653

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=99.98  E-value=1.3e-29  Score=223.72  Aligned_cols=234  Identities=18%  Similarity=0.277  Sum_probs=182.7

Q ss_pred             cccccccceeEEEEccCCCEEEEeeCCCCeEEEeCCCCcEEEEecCCCCceEEEEECCCCCeEEEeeCCCcEEEEECCCC
Q 021399            5 LMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETG   84 (313)
Q Consensus         5 ~l~~h~~~v~~~~fs~~g~~l~s~s~d~~i~iw~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~v~vWd~~~~   84 (313)
                      .+.+|...|++|+|+|+|++|++|+.|+.|+|||+++++.+.++.+|...|.+++++  ++.+++|+.|+.+++||....
T Consensus       142 ~~~~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~~~~~~~~h~~~v~~~s~~--~~~l~sgs~d~~i~~~d~~~~  219 (420)
T 4gga_A          142 QMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWN--SYILSSGSRSGHIHHHDVRVA  219 (420)
T ss_dssp             ECCSTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEETTSS
T ss_pred             EecCCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCCcEEEEEeCCCCceEEEeeC--CCEEEEEeCCCceeEeeeccc
Confidence            456888899999999999999999999999999999999999999999999998875  569999999999999998764


Q ss_pred             e-EEEEe-cCCCCeeEEEeecCCeEEEE-ECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEccCCC-E
Q 021399           85 A-QLFTF-NFDSPARSVDFAVGDKLAVI-TTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNR-T  160 (313)
Q Consensus        85 ~-~~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~  160 (313)
                      . .+..+ .+...+..+.+.+.+..++. ..+..      +.+++....  ......+.....|.+.|..+.|+|.+. .
T Consensus       220 ~~~~~~~~~h~~~~~~~~~~~~g~~l~s~~~D~~------v~i~~~~~~--~~~~~~~~~~~~~~~~V~~~~~~p~~~~~  291 (420)
T 4gga_A          220 EHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNL------VNVWPSAPG--EGGWVPLQTFTQHQGAVKAVAWCPWQSNV  291 (420)
T ss_dssp             SCEEEEEECCSSCEEEEEECTTSSEEEEEETTSC------EEEEESSCC--SSCSCCSEEECCCSSCEEEEEECTTCTTE
T ss_pred             ceeeEEecccccceeeeeecCCCCeeeeeecccc------ceEEeeccc--cccceeeeeecccCCceeeeeeCCCcccE
Confidence            4 33333 34566777778876554443 33332      223322211  111223455677889999999999765 4


Q ss_pred             EEE--eeCCCeEEEEECCCCceeeecccccCceeceEEEEECCCCCEEEEee--CCCcEEEEECCCCcEEEEEe-cCCce
Q 021399          161 IIS--AGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGS--LDKSAKLWDARTLELIKTYV-TERPV  235 (313)
Q Consensus       161 i~t--~~~d~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s--~dg~i~iwd~~~~~~~~~~~-~~~~~  235 (313)
                      +++  |+.|+.|++||+.+++++..+.    +...+.++.|+++++.+++++  .|+.|++||+++++++.++. +...|
T Consensus       292 la~~~gs~D~~I~iwd~~t~~~~~~~~----~~~~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~~~v~~l~gH~~~V  367 (420)
T 4gga_A          292 LATGGGTSDRHIRIWNVCSGACLSAVD----AHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRV  367 (420)
T ss_dssp             EEEEECTTTCEEEEEETTTTEEEEEEE----CSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCCSSCE
T ss_pred             EEEEeecCCCEEEEEeCCccccceeec----cccceeeeeecCCCCeEEEEEecCCCEEEEEECCCCcEEEEEcCCCCCE
Confidence            444  4579999999999998876654    346789999999999988765  79999999999999999986 56789


Q ss_pred             eEEEeccCCCEEEEccc
Q 021399          236 NAVTMSPLLDHVVLGGG  252 (313)
Q Consensus       236 ~~~~~~p~~~~~~~~~~  252 (313)
                      .+++|+|++..+++++.
T Consensus       368 ~~l~~spdg~~l~S~s~  384 (420)
T 4gga_A          368 LSLTMSPDGATVASAAA  384 (420)
T ss_dssp             EEEEECTTSSCEEEEET
T ss_pred             EEEEEcCCCCEEEEEec
Confidence            99999999998776543

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=99.98  E-value=2.1e-30  Score=223.45  Aligned_cols=241  Identities=14%  Similarity=0.121  Sum_probs=182.7

Q ss_pred             cccceeEEEEccC----CCEEEEeeCCCCeEEEeCCCCcEEEEecCCCCceEEEEECC-CCCeEEEeeCCCcEEEEECCC
Q 021399            9 HERPLTYLKYNKD----GDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSR-DSMTLITGSADQTAKLWNVET   83 (313)
Q Consensus         9 h~~~v~~~~fs~~----g~~l~s~s~d~~i~iw~~~~~~~~~~~~~H~~~V~~~~~~~-~~~~l~s~s~D~~v~vWd~~~   83 (313)
                      |...|.+++|+|+    |++|++|+.|+.|++||+.+++.+..+.+|...|.+++|+| ++++|++++.|++|++||+++
T Consensus        68 ~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~  147 (366)
T 3k26_A           68 ADENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQT  147 (366)
T ss_dssp             TTCCEEEEEEEECTTTCCEEEEEEETTCEEEEECTTTCCEEEEEESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTT
T ss_pred             CCCcEEEEEeccCCCCCCCEEEEecCCCEEEEEEchhceEeeeecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeec
Confidence            6678999999999    67999999999999999999999999999999999999999 899999999999999999999


Q ss_pred             CeEEEEe----cCCCCeeEEEeecCCeEEEE-ECCCceeccccceee---eee----eCCC---------CCCCceEEEe
Q 021399           84 GAQLFTF----NFDSPARSVDFAVGDKLAVI-TTDPFMELNSAIHVK---RIA----RDPA---------DQGGESVLIL  142 (313)
Q Consensus        84 ~~~~~~~----~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~---~~~----~~~~---------~~~~~~~~~~  142 (313)
                      ++.+..+    .+...+..+.|++++..++. ..+....++......   .+.    ..+.         ..........
T Consensus       148 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  227 (366)
T 3k26_A          148 DTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTR  227 (366)
T ss_dssp             TEEEEEECSTTSCSSCEEEEEECTTSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEEC
T ss_pred             CeEEEEecccccccCceeEEEECCCCCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccc
Confidence            9888776    35678899999986654444 444333221111000   000    0000         0001112344


Q ss_pred             cCCCCceEEEEEccCCCEEEEeeCCCeEEEEECCCCcee-----------eecccccCceeceEEEEECCC--CCEEEEe
Q 021399          143 KGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLL-----------KESDKETGHKKTITSLAKAAD--GSHFLTG  209 (313)
Q Consensus       143 ~~~~~~i~~~~~~~~~~~i~t~~~d~~i~lwd~~~~~~~-----------~~~~~~~~h~~~v~~~~~s~~--~~~l~s~  209 (313)
                      .+|...|.++.|+  ++++++++.|+.|++||+.+....           ..+.....|...|.+++|+|+  +.+|++|
T Consensus       228 ~~~~~~v~~~~~~--~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~  305 (366)
T 3k26_A          228 DIHRNYVDCVRWL--GDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFWQKMLALG  305 (366)
T ss_dssp             SSCSSCCCEEEEE--TTEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCEECTTSSEEEEE
T ss_pred             cCCcceEEEEEEc--CCEEEEEecCCEEEEEeCCCccccccccccCCcchheeccccccCCcEEEEEEcCCCCCcEEEEE
Confidence            5688899999998  679999999999999998775430           111122357788999999999  9999999


Q ss_pred             eCCCcEEEEECCCCcE----EEEEec---CCceeEEEeccCCCEEEEcc
Q 021399          210 SLDKSAKLWDARTLEL----IKTYVT---ERPVNAVTMSPLLDHVVLGG  251 (313)
Q Consensus       210 s~dg~i~iwd~~~~~~----~~~~~~---~~~~~~~~~~p~~~~~~~~~  251 (313)
                      +.||.|++||++++++    ...+..   ...+.+++|+|++..+++++
T Consensus       306 ~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~  354 (366)
T 3k26_A          306 NQVGKLYVWDLEVEDPHKAKCTTLTHHKCGAAIRQTSFSRDSSILIAVC  354 (366)
T ss_dssp             CTTSCEEEEECCSSSGGGCEEEEECCTTCCSCEEEEEECTTSSEEEEEE
T ss_pred             ecCCcEEEEECCCCCCccccceEEcccccCCceEEEEeCCCCCeEEEEe
Confidence            9999999999998753    334443   46899999999998877654

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=99.98  E-value=1.4e-30  Score=223.92  Aligned_cols=236  Identities=14%  Similarity=0.237  Sum_probs=180.7

Q ss_pred             ccccccceeEEEEccC---CCEEEEeeCCCCeEEEeCCCCc-EEEEecCCCCceEEEE------ECCCCCeEEEeeCCCc
Q 021399            6 MKGHERPLTYLKYNKD---GDLLFSCAKDHTPTVWFADNGE-RLGTYRGHNGAVWCCD------VSRDSMTLITGSADQT   75 (313)
Q Consensus         6 l~~h~~~v~~~~fs~~---g~~l~s~s~d~~i~iw~~~~~~-~~~~~~~H~~~V~~~~------~~~~~~~l~s~s~D~~   75 (313)
                      ..+|..+|.+++|+|+   +++|++|+.|+.|++||+.+++ .+..+.+|.+.|.+++      |+|+++.|++++.|++
T Consensus        61 ~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~  140 (357)
T 3i2n_A           61 EIEKAKPIKCGTFGATSLQQRYLATGDFGGNLHIWNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGT  140 (357)
T ss_dssp             EEEESSCEEEEECTTCCTTTCCEEEEETTSCEEEECTTSCSSCSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSC
T ss_pred             eecccCcEEEEEEcCCCCCCceEEEecCCCeEEEEeCCCCCccEEEEEecccceEEEeeccccccCCCccEEEEEeCCCe
Confidence            4479999999999999   7999999999999999999988 8889999999999995      5788999999999999


Q ss_pred             EEEEECCCCe-EEEEecC-----CCCeeEEE----eecCCeEEEEE-CCCceeccccceeeeeeeCCCCCCCceEEEecC
Q 021399           76 AKLWNVETGA-QLFTFNF-----DSPARSVD----FAVGDKLAVIT-TDPFMELNSAIHVKRIARDPADQGGESVLILKG  144 (313)
Q Consensus        76 v~vWd~~~~~-~~~~~~~-----~~~~~~~~----~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  144 (313)
                      |++||+.+++ .+..+..     ...+..+.    |.+++..++.. .+.      .+.++++.      .. .......
T Consensus       141 i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d~------~i~i~d~~------~~-~~~~~~~  207 (357)
T 3i2n_A          141 VKVWDPRQKDDPVANMEPVQGENKRDCWTVAFGNAYNQEERVVCAGYDNG------DIKLFDLR------NM-ALRWETN  207 (357)
T ss_dssp             EEEECTTSCSSCSEEECCCTTSCCCCEEEEEEECCCC-CCCEEEEEETTS------EEEEEETT------TT-EEEEEEE
T ss_pred             EEEEeCCCCCCcceeccccCCCCCCceEEEEEEeccCCCCCEEEEEccCC------eEEEEECc------cC-ceeeecC
Confidence            9999998876 4444432     22566666    44555544443 332      22333321      11 2234456


Q ss_pred             CCCceEEEEEcc---CCCEEEEeeCCCeEEEEECCCCceeeecc--cccCceeceEEEEECCCCC-EEEEeeCCCcEEEE
Q 021399          145 PQGRINRAVWGP---LNRTIISAGEDAIVRIWDTETGKLLKESD--KETGHKKTITSLAKAADGS-HFLTGSLDKSAKLW  218 (313)
Q Consensus       145 ~~~~i~~~~~~~---~~~~i~t~~~d~~i~lwd~~~~~~~~~~~--~~~~h~~~v~~~~~s~~~~-~l~s~s~dg~i~iw  218 (313)
                      |...+..+.|+|   +++.+++++.|+.|++||+++++.+..+.  ...+|...|++++|+|++. +|++++.||.|++|
T Consensus       208 ~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw  287 (357)
T 3i2n_A          208 IKNGVCSLEFDRKDISMNKLVATSLEGKFHVFDMRTQHPTKGFASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLW  287 (357)
T ss_dssp             CSSCEEEEEESCSSSSCCEEEEEESTTEEEEEEEEEEETTTEEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEE
T ss_pred             CCCceEEEEcCCCCCCCCEEEEECCCCeEEEEeCcCCCcccceeeeccCCCcCCEEEEEECCCCCcEEEEEeCCCcEEEe
Confidence            788999999999   89999999999999999988765433321  1236889999999999998 89999999999999


Q ss_pred             ECCCC-------------------cEEEEEe-cCCceeEEEeccCCCEEEEccccc
Q 021399          219 DARTL-------------------ELIKTYV-TERPVNAVTMSPLLDHVVLGGGQD  254 (313)
Q Consensus       219 d~~~~-------------------~~~~~~~-~~~~~~~~~~~p~~~~~~~~~~~~  254 (313)
                      |++++                   +++..+. +...+.+++|+|++..++++++.|
T Consensus       288 d~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~s~~~d  343 (357)
T 3i2n_A          288 KYEYPIQRSKKDSEGIEMGVAGSVSLLQNVTLSTQPISSLDWSPDKRGLCVCSSFD  343 (357)
T ss_dssp             EEECCSCC--CCTTSCCCCCCCEEEEEEEEECCSSCEEEEEECSSSTTEEEEEETT
T ss_pred             ecCCCcccccccCCCCccccccccceeeccccCCCCeeEEEEcCCCCeEEEEecCC
Confidence            98864                   2444444 466899999999999888655544

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=99.97  E-value=9.5e-30  Score=220.06  Aligned_cols=209  Identities=14%  Similarity=0.156  Sum_probs=168.8

Q ss_pred             ccccccccceeEEEEccCCCEEEEeeCCCCeEEEeCCCCcEEEE--ecCCCCceEEEEECCCCCeEEEeeCCCcEEEEEC
Q 021399            4 ILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGT--YRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNV   81 (313)
Q Consensus         4 ~~l~~h~~~v~~~~fs~~g~~l~s~s~d~~i~iw~~~~~~~~~~--~~~H~~~V~~~~~~~~~~~l~s~s~D~~v~vWd~   81 (313)
                      ..+.+|...|.+++|+|++++|++++.|+.|++||+.+++....  +..|...|.+++|+|+++++++++.|+.|++||+
T Consensus        46 ~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~  125 (372)
T 1k8k_C           46 HELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYF  125 (372)
T ss_dssp             EEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTEEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEE
T ss_pred             eeecCCCCcccEEEEeCCCCEEEEEcCCCeEEEEECCCCeeeeeEEeecCCCceeEEEECCCCCEEEEEeCCCEEEEEEe
Confidence            35778999999999999999999999999999999988875443  4779999999999999999999999999999999


Q ss_pred             CCCeE---EEEe--cCCCCeeEEEeecCCeEEEEE-CCCceeccccceeeeeeeC------------CCCCCCceEEEec
Q 021399           82 ETGAQ---LFTF--NFDSPARSVDFAVGDKLAVIT-TDPFMELNSAIHVKRIARD------------PADQGGESVLILK  143 (313)
Q Consensus        82 ~~~~~---~~~~--~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~  143 (313)
                      +.++.   ....  .+...+..+.|.+++..++.. .+..      +.++++...            .....+..+..+.
T Consensus       126 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~------i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  199 (372)
T 1k8k_C          126 EQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFK------CRIFSAYIKEVEERPAPTPWGSKMPFGELMFESS  199 (372)
T ss_dssp             ETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEETTSC------EEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECC
T ss_pred             cCCCcceeeeeeecccCCCeeEEEEcCCCCEEEEEcCCCC------EEEEEcccccccccccccccccccchhhheEecC
Confidence            87652   2222  235678899999876655443 3332      333332110            0012345677778


Q ss_pred             CCCCceEEEEEccCCCEEEEeeCCCeEEEEECCCCceeeecccccCceeceEEEEECCCCCEEEEeeCCCcEEEEECCC
Q 021399          144 GPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDART  222 (313)
Q Consensus       144 ~~~~~i~~~~~~~~~~~i~t~~~d~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~dg~i~iwd~~~  222 (313)
                      +|...+.++.|+|+++++++++.|+.|++||+.+++++..+.   .|...+.+++|+|++.++++| .|+.|++||+++
T Consensus       200 ~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~---~~~~~v~~~~~~~~~~~l~~~-~d~~i~i~~~~~  274 (372)
T 1k8k_C          200 SSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLA---SETLPLLAVTFITESSLVAAG-HDCFPVLFTYDS  274 (372)
T ss_dssp             CCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGTTEEEEEE---CSSCCEEEEEEEETTEEEEEE-TTSSCEEEEEET
T ss_pred             CCCCeEEEEEECCCCCEEEEEeCCCEEEEEECCCCceeEEEc---cCCCCeEEEEEecCCCEEEEE-eCCeEEEEEccC
Confidence            899999999999999999999999999999999888776654   578899999999999988877 899999999987

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=99.97  E-value=6.2e-29  Score=217.96  Aligned_cols=227  Identities=16%  Similarity=0.257  Sum_probs=183.3

Q ss_pred             ccccceeEEEEccCCCEEEEeeCCCCeEEEeCCCCcEEEEecCCCCceEEEEECCCCCeEEEeeCCCcEEEEECCC-CeE
Q 021399            8 GHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVET-GAQ   86 (313)
Q Consensus         8 ~h~~~v~~~~fs~~g~~l~s~s~d~~i~iw~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~v~vWd~~~-~~~   86 (313)
                      .|...|.+++|+|++++|++|+.||.|++||+.+++.+.++.+|...|.+++|+  ++.+++++.|+.|++||++. ...
T Consensus       132 ~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~dg~i~i~d~~~~~~~  209 (401)
T 4aez_A          132 DESTYVASVKWSHDGSFLSVGLGNGLVDIYDVESQTKLRTMAGHQARVGCLSWN--RHVLSSGSRSGAIHHHDVRIANHQ  209 (401)
T ss_dssp             CTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEETTSSSCE
T ss_pred             CCCCCEEEEEECCCCCEEEEECCCCeEEEEECcCCeEEEEecCCCCceEEEEEC--CCEEEEEcCCCCEEEEecccCcce
Confidence            388899999999999999999999999999999999999999999999999994  56999999999999999984 444


Q ss_pred             EEEe-cCCCCeeEEEeecCCeEEEEE-CCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEccCCC-EEEE
Q 021399           87 LFTF-NFDSPARSVDFAVGDKLAVIT-TDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNR-TIIS  163 (313)
Q Consensus        87 ~~~~-~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~i~t  163 (313)
                      +..+ .+...+..+.|++++..++.. .+.      .+.++++.      ....+..+..|...|..+.|+|.+. .+++
T Consensus       210 ~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~------~v~iwd~~------~~~~~~~~~~~~~~v~~~~~~p~~~~ll~~  277 (401)
T 4aez_A          210 IGTLQGHSSEVCGLAWRSDGLQLASGGNDN------VVQIWDAR------SSIPKFTKTNHNAAVKAVAWCPWQSNLLAT  277 (401)
T ss_dssp             EEEEECCSSCEEEEEECTTSSEEEEEETTS------CEEEEETT------CSSEEEEECCCSSCCCEEEECTTSTTEEEE
T ss_pred             eeEEcCCCCCeeEEEEcCCCCEEEEEeCCC------eEEEccCC------CCCccEEecCCcceEEEEEECCCCCCEEEE
Confidence            4444 356788899999876555443 333      23334332      2455667788999999999999764 5556


Q ss_pred             ee--CCCeEEEEECCCCceeeecccccCceeceEEEEECCCCCEEEE--eeCCCcEEEEECCCCcEEEEE--e-cCCcee
Q 021399          164 AG--EDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLT--GSLDKSAKLWDARTLELIKTY--V-TERPVN  236 (313)
Q Consensus       164 ~~--~d~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s--~s~dg~i~iwd~~~~~~~~~~--~-~~~~~~  236 (313)
                      ++  .|+.|++||+.+++++..+.    +...+.+++|+|++.++++  |+.||.|++||+++++.....  . +...+.
T Consensus       278 ~~gs~d~~i~i~d~~~~~~~~~~~----~~~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~~~~~~~~~~~h~~~v~  353 (401)
T 4aez_A          278 GGGTMDKQIHFWNAATGARVNTVD----AGSQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSGLTKQVDIPAHDTRVL  353 (401)
T ss_dssp             ECCTTTCEEEEEETTTCCEEEEEE----CSSCEEEEEECSSSSEEEEEECTTTCEEEEEEEETTEEEEEEEEECCSSCCC
T ss_pred             ecCCCCCEEEEEECCCCCEEEEEe----CCCcEEEEEECCCCCeEEEEeecCCCcEEEEecCCccceeEEEecCCCCCEE
Confidence            54  79999999999988877653    5678999999999999999  558999999999987655443  2 456799


Q ss_pred             EEEeccCCCEEEEccc
Q 021399          237 AVTMSPLLDHVVLGGG  252 (313)
Q Consensus       237 ~~~~~p~~~~~~~~~~  252 (313)
                      +++|+|++..+++++.
T Consensus       354 ~~~~s~dg~~l~s~~~  369 (401)
T 4aez_A          354 YSALSPDGRILSTAAS  369 (401)
T ss_dssp             EEEECTTSSEEEEECT
T ss_pred             EEEECCCCCEEEEEeC
Confidence            9999999998777654

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=99.97  E-value=1.7e-28  Score=211.48  Aligned_cols=233  Identities=15%  Similarity=0.173  Sum_probs=190.4

Q ss_pred             ccccccccceeEEEEccCCCEEEEeeCCCCeEEEeCCCCcEEEEecCCCCceEEEEECCCCCeEEEeeCC-----CcEEE
Q 021399            4 ILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSAD-----QTAKL   78 (313)
Q Consensus         4 ~~l~~h~~~v~~~~fs~~g~~l~s~s~d~~i~iw~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D-----~~v~v   78 (313)
                      ..+.+|...|.+++|+|++++|++++.|+.|++||+.+++.+..+. |...|.+++|+|+++.+++++.+     +.|++
T Consensus        68 ~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~  146 (369)
T 3zwl_B           68 GTLDGHTGTIWSIDVDCFTKYCVTGSADYSIKLWDVSNGQCVATWK-SPVPVKRVEFSPCGNYFLAILDNVMKNPGSINI  146 (369)
T ss_dssp             EEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEEE-CSSCEEEEEECTTSSEEEEEECCBTTBCCEEEE
T ss_pred             hhhhhcCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEee-cCCCeEEEEEccCCCEEEEecCCccCCCCEEEE
Confidence            3678899999999999999999999999999999999999998888 88999999999999999999999     99999


Q ss_pred             EECCCCeEE-----------E-EecCCC--CeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecC
Q 021399           79 WNVETGAQL-----------F-TFNFDS--PARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKG  144 (313)
Q Consensus        79 Wd~~~~~~~-----------~-~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  144 (313)
                      ||+......           . ......  .+..+.|.+++..++....     ++.+.++++.     .....+..+..
T Consensus       147 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-----dg~i~i~d~~-----~~~~~~~~~~~  216 (369)
T 3zwl_B          147 YEIERDSATHELTKVSEEPIHKIITHEGLDAATVAGWSTKGKYIIAGHK-----DGKISKYDVS-----NNYEYVDSIDL  216 (369)
T ss_dssp             EEEEECTTTCCEEEECSSCSEEEECCTTCCCEEEEEECGGGCEEEEEET-----TSEEEEEETT-----TTTEEEEEEEC
T ss_pred             EEecCCccceeecccccceeeeccCCcCccceeEEEEcCCCCEEEEEcC-----CCEEEEEECC-----CCcEeEEEEec
Confidence            998654311           1 111222  6778888886655444322     1223333321     11456677788


Q ss_pred             CCCceEEEEEccCCCEEEEeeCCCeEEEEECCCCceeeecccccCceeceEEEEECCCCCEEEEeeCCC-----------
Q 021399          145 PQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDK-----------  213 (313)
Q Consensus       145 ~~~~i~~~~~~~~~~~i~t~~~d~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~dg-----------  213 (313)
                      |...|.++.|+|++++|++++.|+.|++||+.+++.+..+.    +...+.+++|+|++.++++++.++           
T Consensus       217 ~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~----~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~  292 (369)
T 3zwl_B          217 HEKSISDMQFSPDLTYFITSSRDTNSFLVDVSTLQVLKKYE----TDCPLNTAVITPLKEFIILGGGQEAKDVTTTSANE  292 (369)
T ss_dssp             CSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEE----CSSCEEEEEECSSSSEEEEEECCC-----------
T ss_pred             CCCceeEEEECCCCCEEEEecCCceEEEEECCCCceeeeec----CCCCceeEEecCCCceEEEeecCCCceEEEEecCC
Confidence            99999999999999999999999999999999988776654    567899999999999999999998           


Q ss_pred             ---cEEEEECCCCcEEEEEe-cCCceeEEEeccCCCEEEEcc
Q 021399          214 ---SAKLWDARTLELIKTYV-TERPVNAVTMSPLLDHVVLGG  251 (313)
Q Consensus       214 ---~i~iwd~~~~~~~~~~~-~~~~~~~~~~~p~~~~~~~~~  251 (313)
                         .+++||.++++++..+. +...+.+++|+|++..+++++
T Consensus       293 ~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~  334 (369)
T 3zwl_B          293 GKFEARFYHKIFEEEIGRVQGHFGPLNTVAISPQGTSYASGG  334 (369)
T ss_dssp             --CEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEE
T ss_pred             CcceeEEEecCCCcchhheecccCcEEEEEECCCCCEEEEEc
Confidence               89999999999988886 467899999999998777654

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=99.97  E-value=1.8e-28  Score=206.94  Aligned_cols=222  Identities=18%  Similarity=0.302  Sum_probs=179.6

Q ss_pred             ccccccccceeEEEEccCCCEEEEeeCCCCeEEEeCCCC---cEEEEecCCCCceEEEEECCCCCeEEEeeCCCcEEEEE
Q 021399            4 ILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNG---ERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWN   80 (313)
Q Consensus         4 ~~l~~h~~~v~~~~fs~~g~~l~s~s~d~~i~iw~~~~~---~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~v~vWd   80 (313)
                      ..+..|...|.+++|+|++++|++++.|+.+++|++.+.   +.+..+.+|...|.+++|  +++.+++++.|+.|++||
T Consensus        53 ~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--~~~~l~~~~~d~~i~~~d  130 (313)
T 3odt_A           53 TVVYTGQGFLNSVCYDSEKELLLFGGKDTMINGVPLFATSGEDPLYTLIGHQGNVCSLSF--QDGVVISGSWDKTAKVWK  130 (313)
T ss_dssp             EEEEECSSCEEEEEEETTTTEEEEEETTSCEEEEETTCCTTSCC-CEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEE
T ss_pred             EEeecCCccEEEEEECCCCCEEEEecCCCeEEEEEeeecCCCCcccchhhcccCEEEEEe--cCCEEEEEeCCCCEEEEc
Confidence            456789999999999999999999999999999998765   567788999999999999  567999999999999999


Q ss_pred             CCCCeEEEEec-CCCCeeEEEeec--CCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecC-CCCceEEEEEcc
Q 021399           81 VETGAQLFTFN-FDSPARSVDFAV--GDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKG-PQGRINRAVWGP  156 (313)
Q Consensus        81 ~~~~~~~~~~~-~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~~~  156 (313)
                        .++....+. ...++..+.+.+  +..++....+...      .+++        .......+.. |...+..+.|+|
T Consensus       131 --~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i------~i~d--------~~~~~~~~~~~~~~~i~~~~~~~  194 (313)
T 3odt_A          131 --EGSLVYNLQAHNASVWDAKVVSFSENKFLTASADKTI------KLWQ--------NDKVIKTFSGIHNDVVRHLAVVD  194 (313)
T ss_dssp             --TTEEEEEEECCSSCEEEEEEEETTTTEEEEEETTSCE------EEEE--------TTEEEEEECSSCSSCEEEEEEEE
T ss_pred             --CCcEEEecccCCCceeEEEEccCCCCEEEEEECCCCE------EEEe--------cCceEEEEeccCcccEEEEEEcC
Confidence              445554443 466777888776  4445444444332      2332        1234455555 888999999999


Q ss_pred             CCCEEEEeeCCCeEEEEECCCCceeeecccccCceeceEEEEECCCCCEEEEeeCCCcEEEEECCCCcEEEEEec-CCce
Q 021399          157 LNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVT-ERPV  235 (313)
Q Consensus       157 ~~~~i~t~~~d~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~-~~~~  235 (313)
                      ++. +++++.|+.|++||+.+++.+..+.   +|...+++++|+|++ .|++++.||.|++||+++++++..+.. ...+
T Consensus       195 ~~~-~~~~~~dg~i~i~d~~~~~~~~~~~---~~~~~i~~~~~~~~~-~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i  269 (313)
T 3odt_A          195 DGH-FISCSNDGLIKLVDMHTGDVLRTYE---GHESFVYCIKLLPNG-DIVSCGEDRTVRIWSKENGSLKQVITLPAISI  269 (313)
T ss_dssp             TTE-EEEEETTSEEEEEETTTCCEEEEEE---CCSSCEEEEEECTTS-CEEEEETTSEEEEECTTTCCEEEEEECSSSCE
T ss_pred             CCe-EEEccCCCeEEEEECCchhhhhhhh---cCCceEEEEEEecCC-CEEEEecCCEEEEEECCCCceeEEEeccCceE
Confidence            988 9999999999999999988776654   588999999999999 699999999999999999999888864 4589


Q ss_pred             eEEEeccCCCEEEE
Q 021399          236 NAVTMSPLLDHVVL  249 (313)
Q Consensus       236 ~~~~~~p~~~~~~~  249 (313)
                      .+++|+|++. +++
T Consensus       270 ~~~~~~~~~~-~~~  282 (313)
T 3odt_A          270 WSVDCMSNGD-IIV  282 (313)
T ss_dssp             EEEEECTTSC-EEE
T ss_pred             EEEEEccCCC-EEE
Confidence            9999999987 444

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=99.97  E-value=2.9e-29  Score=220.00  Aligned_cols=239  Identities=18%  Similarity=0.204  Sum_probs=181.0

Q ss_pred             ceeEEEEccCCCEE-EEeeCCCCeEEEeCCCCc----EEEEecCCCCceEEEEECC-CCCeEEEeeCCCcEEEEECCCCe
Q 021399           12 PLTYLKYNKDGDLL-FSCAKDHTPTVWFADNGE----RLGTYRGHNGAVWCCDVSR-DSMTLITGSADQTAKLWNVETGA   85 (313)
Q Consensus        12 ~v~~~~fs~~g~~l-~s~s~d~~i~iw~~~~~~----~~~~~~~H~~~V~~~~~~~-~~~~l~s~s~D~~v~vWd~~~~~   85 (313)
                      ....++++|+...+ ++++.||.|+||++....    .+..+.+|.+.|.+++|+| ++++|++|+.||+|++||+.++.
T Consensus        36 ~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~  115 (402)
T 2aq5_A           36 DSGFCAVNPKFMALICEASGGGAFLVLPLGKTGRVDKNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGG  115 (402)
T ss_dssp             SSCSEEECSSEEEEEBCCSSSCCEEEEETTCCEECCTTCCCBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTC
T ss_pred             CCCcEEECCCeEEEEEEEcCCCEEEEEECccCCCCCCCCceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCC
Confidence            34568889887644 457899999999986642    3456789999999999999 89999999999999999998753


Q ss_pred             EEEEecCCCCeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEccCC-CEEEEe
Q 021399           86 QLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLN-RTIISA  164 (313)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~i~t~  164 (313)
                      ...                                             .....+..+.+|...|.++.|+|++ +.++++
T Consensus       116 ~~~---------------------------------------------~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~  150 (402)
T 2aq5_A          116 LVL---------------------------------------------PLREPVITLEGHTKRVGIVAWHPTAQNVLLSA  150 (402)
T ss_dssp             CSS---------------------------------------------CBCSCSEEEECCSSCEEEEEECSSBTTEEEEE
T ss_pred             Ccc---------------------------------------------ccCCceEEecCCCCeEEEEEECcCCCCEEEEE
Confidence            210                                             0001234556788999999999998 699999


Q ss_pred             eCCCeEEEEECCCCceeeecccccCceeceEEEEECCCCCEEEEeeCCCcEEEEECCCCcEEEEE-ec-CC-ceeEEEec
Q 021399          165 GEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTY-VT-ER-PVNAVTMS  241 (313)
Q Consensus       165 ~~d~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~-~~-~~-~~~~~~~~  241 (313)
                      +.|+.|++||+.+++.+..+. ..+|...|.+++|+|++++|++++.|+.|++||+++++++..+ .. .. .+..++|+
T Consensus       151 ~~dg~i~iwd~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~  229 (402)
T 2aq5_A          151 GCDNVILVWDVGTGAAVLTLG-PDVHPDTIYSVDWSRDGALICTSCRDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFV  229 (402)
T ss_dssp             ETTSCEEEEETTTTEEEEEEC-TTTCCSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECSSCSSSCCEEEEC
T ss_pred             cCCCEEEEEECCCCCccEEEe-cCCCCCceEEEEECCCCCEEEEEecCCcEEEEeCCCCceeeeeccCCCCCcceEEEEc
Confidence            999999999999988776552 1358899999999999999999999999999999999998887 32 22 37899999


Q ss_pred             cCCCEEEEccc-ccCceeEeeccCCCceeeeeeehhhhhhhccccccccceeEEEECCCCCeeEEE
Q 021399          242 PLLDHVVLGGG-QDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKRYGFL  306 (313)
Q Consensus       242 p~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~fspdgk~~~~~  306 (313)
                      |++..++++.. ..+..+.+||.+........          ....|...|.+++|+|||+.++..
T Consensus       230 ~~~~~l~~g~~~~~d~~i~iwd~~~~~~~~~~----------~~~~~~~~v~~~~~s~~~~~l~~~  285 (402)
T 2aq5_A          230 SEGKILTTGFSRMSERQVALWDTKHLEEPLSL----------QELDTSSGVLLPFFDPDTNIVYLC  285 (402)
T ss_dssp             STTEEEEEEECTTCCEEEEEEETTBCSSCSEE----------EECCCCSSCEEEEEETTTTEEEEE
T ss_pred             CCCcEEEEeccCCCCceEEEEcCccccCCceE----------EeccCCCceeEEEEcCCCCEEEEE
Confidence            98776555421 22334444444332211111          112477889999999999987654

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=99.97  E-value=4.2e-29  Score=215.28  Aligned_cols=238  Identities=15%  Similarity=0.183  Sum_probs=176.5

Q ss_pred             ccccccccceeEEEEccCCCEEEEeeCCCCeEEEeCCCCcEEEEecCCCCceEEEEE--CCCCCeEEEeeCCCcEEEEEC
Q 021399            4 ILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDV--SRDSMTLITGSADQTAKLWNV   81 (313)
Q Consensus         4 ~~l~~h~~~v~~~~fs~~g~~l~s~s~d~~i~iw~~~~~~~~~~~~~H~~~V~~~~~--~~~~~~l~s~s~D~~v~vWd~   81 (313)
                      ..+.+|...|.+++|+|++++|++++.|+.|++||+.+++.+. +.+|...|.+++|  +|++++|++++.|++|++||+
T Consensus        80 ~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~  158 (368)
T 3mmy_A           80 KAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKMWDLSSNQAIQ-IAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDT  158 (368)
T ss_dssp             EEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEE-EEECSSCEEEEEEEECSSCEEEEEEETTSEEEEECS
T ss_pred             EEeccccCCEEEEEECcCCCEEEEEcCCCcEEEEEcCCCCcee-eccccCceEEEEEEeCCCCCEEEEccCCCcEEEEEC
Confidence            4678999999999999999999999999999999999988765 6679999999999  899999999999999999999


Q ss_pred             CCCeEEEEecCCCCeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEe-cCCCCceEEEEEccCCCE
Q 021399           82 ETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLIL-KGPQGRINRAVWGPLNRT  160 (313)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~  160 (313)
                      ++++.+..+........+.+... .+++...+..      +.++++..     ........ ..+......+.+.+....
T Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~------i~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~  226 (368)
T 3mmy_A          159 RSSNPMMVLQLPERCYCADVIYP-MAVVATAERG------LIVYQLEN-----QPSEFRRIESPLKHQHRCVAIFKDKQN  226 (368)
T ss_dssp             SCSSCSEEEECSSCEEEEEEETT-EEEEEEGGGC------EEEEECSS-----SCEEEEECCCSCSSCEEEEEEEECTTS
T ss_pred             CCCcEEEEEecCCCceEEEecCC-eeEEEeCCCc------EEEEEecc-----ccchhhhccccccCCCceEEEcccCCC
Confidence            99887777766555555555543 3333333222      22222211     01111111 112233444444444333


Q ss_pred             ----EEEeeCCCeEEEEECCCCceeeecccccCcee------------ceEEEEECCCCCEEEEeeCCCcEEEEECCCCc
Q 021399          161 ----IISAGEDAIVRIWDTETGKLLKESDKETGHKK------------TITSLAKAADGSHFLTGSLDKSAKLWDARTLE  224 (313)
Q Consensus       161 ----i~t~~~d~~i~lwd~~~~~~~~~~~~~~~h~~------------~v~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~  224 (313)
                          +++++.|+.|++||+.............+|..            .|++++|+|++++|++++.||.|++||+++++
T Consensus       227 ~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~  306 (368)
T 3mmy_A          227 KPTGFALGSIEGRVAIHYINPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDART  306 (368)
T ss_dssp             CEEEEEEEETTSEEEEEESSCSCHHHHSEEEECSEEC----CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETTTTE
T ss_pred             CCCeEEEecCCCcEEEEecCCCCccccceeeeeeecccccccccccccceEEEEEecCCCEEEEEccCCeEEEEECCCCc
Confidence                99999999999999987632111111123444            79999999999999999999999999999999


Q ss_pred             EEEEEe-cCCceeEEEeccCCCEEEEccccc
Q 021399          225 LIKTYV-TERPVNAVTMSPLLDHVVLGGGQD  254 (313)
Q Consensus       225 ~~~~~~-~~~~~~~~~~~p~~~~~~~~~~~~  254 (313)
                      ++..+. +...+.+++|+|++..++++++++
T Consensus       307 ~~~~~~~~~~~v~~~~~s~~g~~l~~~s~d~  337 (368)
T 3mmy_A          307 KLKTSEQLDQPISACCFNHNGNIFAYASSYD  337 (368)
T ss_dssp             EEEECCCCSSCEEEEEECTTSSCEEEEECCC
T ss_pred             EEEEecCCCCCceEEEECCCCCeEEEEeccc
Confidence            988876 467899999999999988876644

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=99.97  E-value=2.7e-30  Score=229.38  Aligned_cols=252  Identities=12%  Similarity=0.099  Sum_probs=181.4

Q ss_pred             ccccceeEEEEccCCCEEEEeeCCCCeEEEeCCCCcEEEEecCCCCceEEEEECCCCCeEEEeeCCCcEEEEECCCCeEE
Q 021399            8 GHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQL   87 (313)
Q Consensus         8 ~h~~~v~~~~fs~~g~~l~s~s~d~~i~iw~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~v~vWd~~~~~~~   87 (313)
                      .-...|.+++|||||+++||+|.|++|+  |.+.++   .+++|.+.|++++|+|+|       .++++++|+.+... .
T Consensus        13 ~~~~~v~sv~~SpDG~~iASas~D~TV~--d~~~~~---~l~gh~~~v~~V~FsPdg-------~~~~~~~~~~~~~~-~   79 (588)
T 2j04_A           13 EFEDWKNNLTWARDGTLYLTTFPDISIG--QPKYAK---DINCNSKNLFHVKEFPLE-------FENKLDFELAQQNG-L   79 (588)
T ss_dssp             CCSSSSCCEEECTTSCEEEECSSSEEEE--EECCCS---CCSSBGGGTEEEEEECCC-------CCCTTTTSCCCSSC-S
T ss_pred             HhhccEEEEEECCCCCEEEEEcCCceee--cccccc---eecCCCccEEEEEECCCC-------CcceEEEEeCCCce-E
Confidence            3456799999999999999999999999  755554   457999999999999987       57777776644222 2


Q ss_pred             EEecCCCCeeEEEeecCCeE-EEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCC-----ceEEEEEccCCCEE
Q 021399           88 FTFNFDSPARSVDFAVGDKL-AVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQG-----RINRAVWGPLNRTI  161 (313)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~i~~~~~~~~~~~i  161 (313)
                      ........+..+.|+|+++. ++++.++...+      |+.        ...+..+. |..     .+.+++|+|+|+++
T Consensus        80 ~~~~~~~~V~~vawSPdG~~LAs~s~dg~V~i------wd~--------~~~l~~l~-~~~~~~~~sv~svafSPDG~~L  144 (588)
T 2j04_A           80 LNSQPVCYPRVCKPSPIDDWMAVLSNNGNVSV------FKD--------NKMLTNLD-SKGNLSSRTYHCFEWNPIESSI  144 (588)
T ss_dssp             STTSCSCCEEEEEECSSSSCEEEEETTSCEEE------EET--------TEEEEECC-CSSCSTTTCEEEEEECSSSSCE
T ss_pred             eecCCCCcEEEEEECCCCCEEEEEeCCCcEEE------EeC--------Cceeeecc-CCCccccccEEEEEEcCCCCEE
Confidence            22223567888899997764 44444443332      221        01333344 554     48999999999999


Q ss_pred             EEeeCCCeEEEEECCCCce-------eeecc-cccCceeceEEEEECCCCCEEEEeeCCCcEEEEECCCCcE---EEEEe
Q 021399          162 ISAGEDAIVRIWDTETGKL-------LKESD-KETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLEL---IKTYV  230 (313)
Q Consensus       162 ~t~~~d~~i~lwd~~~~~~-------~~~~~-~~~~h~~~v~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~---~~~~~  230 (313)
                      ++|+.||+|+|||+..+..       +.++. ...+|...|.+++|+|||  +++++.|++|++||+.+++.   ..++.
T Consensus       145 Asgs~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg--Laass~D~tVrlWd~~~~~~~~~~~tL~  222 (588)
T 2j04_A          145 VVGNEDGELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV--LVAALSNNSVFSMTVSASSHQPVSRMIQ  222 (588)
T ss_dssp             EEEETTSEEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE--EEEEETTCCEEEECCCSSSSCCCEEEEE
T ss_pred             EEEcCCCEEEEEECCCCccccccceeeeeeecccccccccEEEEEEcCCc--EEEEeCCCeEEEEECCCCccccceeeec
Confidence            9999999999999988752       33321 124688999999999999  88999999999999988773   34553


Q ss_pred             --cCCceeEEEeccCCCEEEEcccccCceeEeeccCCCceeeeeeehhhhhhhccccccccceeEEEE--CCCCCeeEEE
Q 021399          231 --TERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAF--NPDGKRYGFL  306 (313)
Q Consensus       231 --~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~f--spdgk~~~~~  306 (313)
                        +...|.+++|+  ++.+++++ +  .            .+++||...++......+|.+.|++++|  +||++.++.-
T Consensus       223 ~~h~~~V~svaFs--g~~LASa~-~--~------------tIkLWd~~~~~~~~~~~gh~~~V~~va~~~s~d~~~La~a  285 (588)
T 2j04_A          223 NASRRKITDLKIV--DYKVVLTC-P--G------------YVHKIDLKNYSISSLKTGSLENFHIIPLNHEKESTILLMS  285 (588)
T ss_dssp             CCCSSCCCCEEEE--TTEEEEEC-S--S------------EEEEEETTTTEEEEEECSCCSCCCEEEETTCSSCEEEEEC
T ss_pred             ccccCcEEEEEEE--CCEEEEEe-C--C------------eEEEEECCCCeEEEEEcCCCceEEEEEeeeCCCCCEEEEE
Confidence              34579999999  56555553 2  2            3456665544432223379999999999  9999887653

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=99.97  E-value=5.9e-30  Score=219.84  Aligned_cols=225  Identities=9%  Similarity=-0.043  Sum_probs=167.7

Q ss_pred             EEccCCCEEEEeeCCCCeEEEeCCCCcEEEEecCCCCceEEEEECCCCCeEEEeeCCCcEEEEECCCCeEEEEecCCCCe
Q 021399           17 KYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFNFDSPA   96 (313)
Q Consensus        17 ~fs~~g~~l~s~s~d~~i~iw~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~v~vWd~~~~~~~~~~~~~~~~   96 (313)
                      .+.+++.+|++|+.||.|++||+.+++.+.++.  .+.|.++.++|+   +++++.|++|++|+......+....     
T Consensus        43 ~~~~d~~~l~sg~~Dg~v~iwd~~~~~~~~~~~--~~~v~~~~~~~~---~~s~s~D~~i~~w~~~~~~~~~~~~-----  112 (343)
T 3lrv_A           43 SMYYDKWVCMCRCEDGALHFTQLKDSKTITTIT--TPNPRTGGEHPA---IISRGPCNRLLLLYPGNQITILDSK-----  112 (343)
T ss_dssp             SSSEEEEEEEEEEETTEEEEEEESSSSCEEEEE--EECCCTTCCCCS---EEEECSTTEEEEEETTTEEEEEETT-----
T ss_pred             hhcCCCCEEEEECCCCcEEEEECCCCcEEEEEe--cCCceeeeeCCc---eEEecCCCeEEEEEccCceEEeecC-----
Confidence            345678999999999999999999999888877  567888889887   9999999999999987532211110     


Q ss_pred             eEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEE-ecCCCCceEEEEEcc--CCCEEEEeeCCCeEEEE
Q 021399           97 RSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLI-LKGPQGRINRAVWGP--LNRTIISAGEDAIVRIW  173 (313)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~~~~~~--~~~~i~t~~~d~~i~lw  173 (313)
                                                            ....+.. ..+|.+.|.++.|+|  +++++++++.|+.|++|
T Consensus       113 --------------------------------------~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~w  154 (343)
T 3lrv_A          113 --------------------------------------TNKVLREIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQ  154 (343)
T ss_dssp             --------------------------------------TCCEEEEEECCCSSCEEEEECCC---CCEEEEEETTCCEEEE
T ss_pred             --------------------------------------CcceeEEeecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEE
Confidence                                                  0111111 125667899999999  99999999999999999


Q ss_pred             ECCCCceeeecccccCceeceEEEEECCCCCEEEEeeCCCcEEEEECCCCcEE-EEEe--cCCceeEEEeccCCCEEEEc
Q 021399          174 DTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELI-KTYV--TERPVNAVTMSPLLDHVVLG  250 (313)
Q Consensus       174 d~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~-~~~~--~~~~~~~~~~~p~~~~~~~~  250 (313)
                      |+++++.+....  ..|...+++++|+|++.+|++|+.||.|++||+++++++ ..+.  +..++.+++|+|++..++++
T Consensus       155 d~~~~~~~~~~~--~~~~~~i~~~~~~pdg~~lasg~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~fs~~g~~l~s~  232 (343)
T 3lrv_A          155 SYEDDSQYIVHS--AKSDVEYSSGVLHKDSLLLALYSPDGILDVYNLSSPDQASSRFPVDEEAKIKEVKFADNGYWMVVE  232 (343)
T ss_dssp             ESSSSCEEEEEC--CCSSCCCCEEEECTTSCEEEEECTTSCEEEEESSCTTSCCEECCCCTTSCEEEEEECTTSSEEEEE
T ss_pred             ECCCCcEEEEEe--cCCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCCCCccEEeccCCCCEEEEEEeCCCCEEEEE
Confidence            999888755432  235567999999999999999999999999999999877 5564  46789999999999887776


Q ss_pred             ccccCceeEeeccCCCceeeeeeehhhhhhhcccc---cccccee--EEEECCCCCeeEEE
Q 021399          251 GGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVK---GHFGPIN--ALAFNPDGKRYGFL  306 (313)
Q Consensus       251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~h~~~V~--~~~fspdgk~~~~~  306 (313)
                      + ++  .+.+||.+            ..+.+..+.   .|..++.  +++|+|+|++++..
T Consensus       233 ~-~~--~v~iwd~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~  278 (343)
T 3lrv_A          233 C-DQ--TVVCFDLR------------KDVGTLAYPTYTIPEFKTGTVTYDIDDSGKNMIAY  278 (343)
T ss_dssp             E-SS--BEEEEETT------------SSTTCBSSCCCBC-----CCEEEEECTTSSEEEEE
T ss_pred             e-CC--eEEEEEcC------------CCCcceeecccccccccccceEEEECCCCCEEEEe
Confidence            5 32  45555544            333332222   2445554  69999999998864

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=99.97  E-value=7.8e-29  Score=214.59  Aligned_cols=209  Identities=20%  Similarity=0.327  Sum_probs=167.4

Q ss_pred             ccccccccceeEEEEccC--CCEEEEeeCCCCeEEEeCCCCc--EEEEecCCCCceEEEEECCC--CCeEEEeeCCCcEE
Q 021399            4 ILMKGHERPLTYLKYNKD--GDLLFSCAKDHTPTVWFADNGE--RLGTYRGHNGAVWCCDVSRD--SMTLITGSADQTAK   77 (313)
Q Consensus         4 ~~l~~h~~~v~~~~fs~~--g~~l~s~s~d~~i~iw~~~~~~--~~~~~~~H~~~V~~~~~~~~--~~~l~s~s~D~~v~   77 (313)
                      ..+.+|...|.+++|+++  +++|++++.|+.|++||+.+++  .+..+.+|...|.+++|+|+  ++++++++.|++|+
T Consensus        49 ~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~  128 (379)
T 3jrp_A           49 DTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVS  128 (379)
T ss_dssp             EEECCCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEE
T ss_pred             eEecCCCCcEEEEEeCCCCCCCEEEEeccCCEEEEEEcCCCceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEE
Confidence            367899999999999987  9999999999999999999987  77888999999999999999  89999999999999


Q ss_pred             EEECCCCeEEEEecCCCCeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEcc-
Q 021399           78 LWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGP-  156 (313)
Q Consensus        78 vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-  156 (313)
                      +||+.++...                                                  ....+..|...|.++.|+| 
T Consensus       129 v~d~~~~~~~--------------------------------------------------~~~~~~~~~~~v~~~~~~~~  158 (379)
T 3jrp_A          129 VVEFKENGTT--------------------------------------------------SPIIIDAHAIGVNSASWAPA  158 (379)
T ss_dssp             EEECCTTSCC--------------------------------------------------CEEEEECCTTCEEEEEECCC
T ss_pred             EEecCCCCce--------------------------------------------------eeEEecCCCCceEEEEEcCc
Confidence            9998765311                                                  0112234566777888887 


Q ss_pred             ------------CCCEEEEeeCCCeEEEEECCCCceee-ecccccCceeceEEEEECCC---CCEEEEeeCCCcEEEEEC
Q 021399          157 ------------LNRTIISAGEDAIVRIWDTETGKLLK-ESDKETGHKKTITSLAKAAD---GSHFLTGSLDKSAKLWDA  220 (313)
Q Consensus       157 ------------~~~~i~t~~~d~~i~lwd~~~~~~~~-~~~~~~~h~~~v~~~~~s~~---~~~l~s~s~dg~i~iwd~  220 (313)
                                  ++..+++++.|+.|++||++++.... ......+|...|.+++|+|+   +.+|++++.||.|++||+
T Consensus       159 ~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~dg~i~iwd~  238 (379)
T 3jrp_A          159 TIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQ  238 (379)
T ss_dssp             C----------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEE
T ss_pred             cccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecccCcEeEEEECCCCCCCCeEEEEeCCCEEEEEeC
Confidence                        68999999999999999987654321 11223468899999999999   899999999999999999


Q ss_pred             CCCc---EEEEEe---cCCceeEEEeccCCCEEEEcccccCceeEeeccC
Q 021399          221 RTLE---LIKTYV---TERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHR  264 (313)
Q Consensus       221 ~~~~---~~~~~~---~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~  264 (313)
                      +++.   ....+.   +...+.+++|+|++..+++++.  ++.+.+|+..
T Consensus       239 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~--dg~i~iw~~~  286 (379)
T 3jrp_A          239 DNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGG--DNKVTLWKEN  286 (379)
T ss_dssp             SSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEES--SSSEEEEEEE
T ss_pred             CCCCccceeeeeccccCCCcEEEEEEcCCCCEEEEecC--CCcEEEEeCC
Confidence            9864   222221   4567899999999998877654  3345566543

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=99.97  E-value=2.4e-28  Score=212.63  Aligned_cols=231  Identities=14%  Similarity=0.193  Sum_probs=176.2

Q ss_pred             cccccceeEEEEcc-CCCEEEEeeCCCCeEEEeCCCCcEEEEecCC---CCceEEEEECCCCCeEEEeeCCCcEEEEECC
Q 021399            7 KGHERPLTYLKYNK-DGDLLFSCAKDHTPTVWFADNGERLGTYRGH---NGAVWCCDVSRDSMTLITGSADQTAKLWNVE   82 (313)
Q Consensus         7 ~~h~~~v~~~~fs~-~g~~l~s~s~d~~i~iw~~~~~~~~~~~~~H---~~~V~~~~~~~~~~~l~s~s~D~~v~vWd~~   82 (313)
                      .+|...|.+++|+| ++++|++++.|+.|++||+.+ ..+..+..|   ...|.+++|+|+++.|++|+.|+.|++||++
T Consensus       115 ~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~  193 (383)
T 3ei3_B          115 MGPGDAITGMKFNQFNTNQLFVSSIRGATTLRDFSG-SVIQVFAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGLD  193 (383)
T ss_dssp             CSTTCBEEEEEEETTEEEEEEEEETTTEEEEEETTS-CEEEEEECCCCSSCCEEEEEEETTTTEEEEEETTSEEEEEETT
T ss_pred             CCcCCceeEEEeCCCCCCEEEEEeCCCEEEEEECCC-CceEEEeccCCCCCCeEEEEECCCCCEEEEECCCCCEEEEECC
Confidence            47999999999999 789999999999999999986 555566544   4889999999999999999999999999995


Q ss_pred             CCeEEEEe-cCCCCeeEEEeecCCe--EEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEcc-CC
Q 021399           83 TGAQLFTF-NFDSPARSVDFAVGDK--LAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGP-LN  158 (313)
Q Consensus        83 ~~~~~~~~-~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~  158 (313)
                       ++.+..+ .+...+..+.|.+++.  ++.+..+.      .+.++++....  .....+..+ +|...+.++.|+| ++
T Consensus       194 -~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~------~i~iwd~~~~~--~~~~~~~~~-~~~~~v~~~~~s~~~~  263 (383)
T 3ei3_B          194 -GHEIFKEKLHKAKVTHAEFNPRCDWLMATSSVDA------TVKLWDLRNIK--DKNSYIAEM-PHEKPVNAAYFNPTDS  263 (383)
T ss_dssp             -SCEEEEEECSSSCEEEEEECSSCTTEEEEEETTS------EEEEEEGGGCC--STTCEEEEE-ECSSCEEEEEECTTTS
T ss_pred             -CCEEEEeccCCCcEEEEEECCCCCCEEEEEeCCC------EEEEEeCCCCC--cccceEEEe-cCCCceEEEEEcCCCC
Confidence             4555444 4567899999999765  44444443      23344433211  112233333 6889999999999 99


Q ss_pred             CEEEEeeCCCeEEEEECCCCceeeecccc----cCce----------eceEEEEECCCCCEEEEeeCCCcEEEEECCCCc
Q 021399          159 RTIISAGEDAIVRIWDTETGKLLKESDKE----TGHK----------KTITSLAKAADGSHFLTGSLDKSAKLWDARTLE  224 (313)
Q Consensus       159 ~~i~t~~~d~~i~lwd~~~~~~~~~~~~~----~~h~----------~~v~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~  224 (313)
                      ++|++++.|+.|++||+.+++.+..+...    ..|.          ..+..++++|++.+  +++.|+.|++||+++++
T Consensus       264 ~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~dg~~--s~s~d~~i~iwd~~~~~  341 (383)
T 3ei3_B          264 TKLLTTDQRNEIRVYSSYDWSKPDQIIIHPHRQFQHLTPIKATWHPMYDLIVAGRYPDDQL--LLNDKRTIDIYDANSGG  341 (383)
T ss_dssp             CEEEEEESSSEEEEEETTBTTSCSEEEECCBCCCTTSCCCCCEECSSSSEEEEECBCCTTT--CTTCCCCEEEEETTTCC
T ss_pred             CEEEEEcCCCcEEEEECCCCccccccccccccccccccceEEeccCCCCceEEEecCCccc--ccCCCCeEEEEecCCCc
Confidence            99999999999999999887665443311    1122          34555777788776  88899999999999999


Q ss_pred             EEEEEec---CCceeEEEeccCCCEEEEc
Q 021399          225 LIKTYVT---ERPVNAVTMSPLLDHVVLG  250 (313)
Q Consensus       225 ~~~~~~~---~~~~~~~~~~p~~~~~~~~  250 (313)
                      ++..+..   ...+..++|+|++..++++
T Consensus       342 ~~~~l~~~~~~~~~~~~~~s~~g~~l~s~  370 (383)
T 3ei3_B          342 LVHQLRDPNAAGIISLNKFSPTGDVLASG  370 (383)
T ss_dssp             EEEEECBTTBCSCCCEEEECTTSSEEEEE
T ss_pred             eeeeecCCCCCceEEEEEEecCccEEEEe
Confidence            9988863   4457778999999987666

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=99.97  E-value=8.7e-29  Score=211.69  Aligned_cols=236  Identities=11%  Similarity=0.034  Sum_probs=185.2

Q ss_pred             cccccccccceeEEEEccCCC-EEEEeeCCCCeEEEeC-CCCcEEEEecC--CCCceEEEEECCCCCeEEEeeCCCcEEE
Q 021399            3 PILMKGHERPLTYLKYNKDGD-LLFSCAKDHTPTVWFA-DNGERLGTYRG--HNGAVWCCDVSRDSMTLITGSADQTAKL   78 (313)
Q Consensus         3 ~~~l~~h~~~v~~~~fs~~g~-~l~s~s~d~~i~iw~~-~~~~~~~~~~~--H~~~V~~~~~~~~~~~l~s~s~D~~v~v   78 (313)
                      ++.+.+|...|.+++|+|+++ +|++|+.|+.|++||+ .+++. ..+.+  |...|.+++|+| ++.+++++.|+.|++
T Consensus        49 ~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~-~~~~~~~~~~~v~~l~~~~-~~~l~s~~~d~~i~i  126 (342)
T 1yfq_A           49 LLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDLIGSPSF-QALTNNEANLGICRICKYG-DDKLIAASWDGLIEV  126 (342)
T ss_dssp             EEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEEECSSSSSSE-EECBSCCCCSCEEEEEEET-TTEEEEEETTSEEEE
T ss_pred             ceeeeecCCceEEEEECCCCCcEEEEEcCCCeEEEEEeccCCce-EeccccCCCCceEEEEeCC-CCEEEEEcCCCeEEE
Confidence            456678999999999999999 9999999999999999 77765 67888  999999999999 999999999999999


Q ss_pred             EECCC---------CeEEEEecCCCCeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCce
Q 021399           79 WNVET---------GAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRI  149 (313)
Q Consensus        79 Wd~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  149 (313)
                      ||+++         ++.+..+.....+..+.+.++. ++++..+..      +.++++...   ...........|...+
T Consensus       127 wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-l~~~~~d~~------i~i~d~~~~---~~~~~~~~~~~~~~~i  196 (342)
T 1yfq_A          127 IDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSR-LIVGMNNSQ------VQWFRLPLC---EDDNGTIEESGLKYQI  196 (342)
T ss_dssp             ECHHHHTTBCEEEEESCSSSSSSCCCEEEEEECSSE-EEEEESTTE------EEEEESSCC---TTCCCEEEECSCSSCE
T ss_pred             EcccccccccccccCCeeeEEeeCCceEEEEecCCc-EEEEeCCCe------EEEEECCcc---ccccceeeecCCCCce
Confidence            99986         5555445566678888888766 555444432      333333210   1111233445677889


Q ss_pred             EEEEEcc-CCCEEEEeeCCCeEEEEECCCC------ceeeeccccc------CceeceEEEEECCCCCEEEEeeCCCcEE
Q 021399          150 NRAVWGP-LNRTIISAGEDAIVRIWDTETG------KLLKESDKET------GHKKTITSLAKAADGSHFLTGSLDKSAK  216 (313)
Q Consensus       150 ~~~~~~~-~~~~i~t~~~d~~i~lwd~~~~------~~~~~~~~~~------~h~~~v~~~~~s~~~~~l~s~s~dg~i~  216 (313)
                      .++.|+| +++++++++.|+.|++||....      +....+....      +|...|.+++|+|++++|++++.||.|+
T Consensus       197 ~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~  276 (342)
T 1yfq_A          197 RDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIIS  276 (342)
T ss_dssp             EEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEE
T ss_pred             eEEEECCCCCCEEEEEecCCcEEEEEEcCCCcccccccceeeecccccccccccceeEEEEEEcCCCCEEEEecCCceEE
Confidence            9999999 9999999999999999999765      4443332111      2344999999999999999999999999


Q ss_pred             EEECCCCcEEEEEec--CCceeEEEeccCCCEEEEccc
Q 021399          217 LWDARTLELIKTYVT--ERPVNAVTMSPLLDHVVLGGG  252 (313)
Q Consensus       217 iwd~~~~~~~~~~~~--~~~~~~~~~~p~~~~~~~~~~  252 (313)
                      +||+++++++..+..  ..++.+++  |++..+++++.
T Consensus       277 vwd~~~~~~~~~~~~~h~~~v~~~~--~~~~~l~s~s~  312 (342)
T 1yfq_A          277 CWNLQTRKKIKNFAKFNEDSVVKIA--CSDNILCLATS  312 (342)
T ss_dssp             EEETTTTEEEEECCCCSSSEEEEEE--ECSSEEEEEEE
T ss_pred             EEcCccHhHhhhhhcccCCCceEec--CCCCeEEEEec
Confidence            999999999888863  66788888  88887766543

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=99.97  E-value=8.8e-29  Score=211.26  Aligned_cols=215  Identities=17%  Similarity=0.272  Sum_probs=165.3

Q ss_pred             cccccccceeEEEEcc--CCCEEEEeeCCCCeEEEeCCCC---------cEEEEecCCCCceEEEEECCC--CCeEEEee
Q 021399            5 LMKGHERPLTYLKYNK--DGDLLFSCAKDHTPTVWFADNG---------ERLGTYRGHNGAVWCCDVSRD--SMTLITGS   71 (313)
Q Consensus         5 ~l~~h~~~v~~~~fs~--~g~~l~s~s~d~~i~iw~~~~~---------~~~~~~~~H~~~V~~~~~~~~--~~~l~s~s   71 (313)
                      .+.+|...|.+++|+|  ++++|++++.|+.|++||+.++         +.+..+.+|.+.|.+++|+|+  ++++++++
T Consensus        52 ~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~  131 (351)
T 3f3f_A           52 SWRAHDSSIVAIDWASPEYGRIIASASYDKTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLG  131 (351)
T ss_dssp             EEECCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEE
T ss_pred             eeccCCCcEEEEEEcCCCCCCEEEEEcCCCeEEEEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEec
Confidence            4678999999999999  6999999999999999999887         567889999999999999999  99999999


Q ss_pred             CCCcEEEEECCCCeEEEEe--------------cCCCCeeEEEeecC---Ce-EEEEECCCceeccccceeeeeeeCCCC
Q 021399           72 ADQTAKLWNVETGAQLFTF--------------NFDSPARSVDFAVG---DK-LAVITTDPFMELNSAIHVKRIARDPAD  133 (313)
Q Consensus        72 ~D~~v~vWd~~~~~~~~~~--------------~~~~~~~~~~~~~~---~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~  133 (313)
                      .|++|++||+++++.+..+              .....+..+.|.|.   .. +++...+.....          .....
T Consensus       132 ~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~----------~~~~~  201 (351)
T 3f3f_A          132 NDGILRLYDALEPSDLRSWTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIY----------QRGKD  201 (351)
T ss_dssp             TTCEEEEEECSSTTCTTCCEEEEEEESCSCCCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEE----------EECTT
T ss_pred             CCCcEEEecCCChHHhccccccccccccccccCCcccceeEEEeccCCCCCcEEEEecCCCcEEE----------EccCC
Confidence            9999999999876532111              12345677788774   33 333333322111          11111


Q ss_pred             CCCceEEEecCCCCceEEEEEccCC----CEEEEeeCCCeEEEEECCCCce-----------------------------
Q 021399          134 QGGESVLILKGPQGRINRAVWGPLN----RTIISAGEDAIVRIWDTETGKL-----------------------------  180 (313)
Q Consensus       134 ~~~~~~~~~~~~~~~i~~~~~~~~~----~~i~t~~~d~~i~lwd~~~~~~-----------------------------  180 (313)
                      .....+..+.+|...|.++.|+|++    +++++++.|+.|++||+..+..                             
T Consensus       202 ~~~~~~~~~~~h~~~i~~~~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  281 (351)
T 3f3f_A          202 GKLHVAAKLPGHKSLIRSISWAPSIGRWYQLIATGCKDGRIRIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSD  281 (351)
T ss_dssp             SCEEEEEECCCCCSCEEEEEECCCSSCSSEEEEEEETTSCEEEEEEEECC------------------------------
T ss_pred             CceeeeeecCCCCcceeEEEECCCCCCcceEEEEEcCCCeEEEEeCCCCcCccccCCcccceeccCCCcccccccccccc
Confidence            1123356677899999999999998    7999999999999999876411                             


Q ss_pred             --------------eeecccccCceeceEEEEECCCCCEEEEeeCCCcEEEEECCCCcEEEEE
Q 021399          181 --------------LKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTY  229 (313)
Q Consensus       181 --------------~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~  229 (313)
                                    ...+....+|...|++++|+|++++|++++.||.|++||+++++.+..+
T Consensus       282 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~  344 (351)
T 3f3f_A          282 SNTEEKAELQSNLQVELLSEHDDHNGEVWSVSWNLTGTILSSAGDDGKVRLWKATYSNEFKCM  344 (351)
T ss_dssp             ---------CCSEEEEEEEEECTTSSCEEEEEECSSSCCEEEEETTSCEEEEEECTTSCEEEE
T ss_pred             cccceeeeecccccccEEEEEecccccEEEEEEcCCCCEEEEecCCCcEEEEecCcCcchhhe
Confidence                          0111222468899999999999999999999999999999987655544

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=99.97  E-value=2.4e-28  Score=216.56  Aligned_cols=235  Identities=12%  Similarity=0.217  Sum_probs=174.3

Q ss_pred             cccccc------------cceeEEEEccCC--CEEEEeeCCCCeEEEeCCCCcEE-------------------------
Q 021399            5 LMKGHE------------RPLTYLKYNKDG--DLLFSCAKDHTPTVWFADNGERL-------------------------   45 (313)
Q Consensus         5 ~l~~h~------------~~v~~~~fs~~g--~~l~s~s~d~~i~iw~~~~~~~~-------------------------   45 (313)
                      .+.+|.            +.|.+++|+|++  .+|++++.|+.|++||+.++...                         
T Consensus        76 ~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~  155 (447)
T 3dw8_B           76 TFQSHEPEFDYLKSLEIEEKINKIRWLPQKNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVP  155 (447)
T ss_dssp             EEECCCCEEEGGGTEEECCCCCEEEECCCCSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCC
T ss_pred             ccccccccccccccccccCceEEEEEcCCCCcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEec
Confidence            677888            889999999998  89999999999999998764432                         


Q ss_pred             --------------EE-ecCCCCceEEEEECCCCCeEEEeeCCCcEEEEECCCC-eEEEEe--------cCCCCeeEEEe
Q 021399           46 --------------GT-YRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETG-AQLFTF--------NFDSPARSVDF  101 (313)
Q Consensus        46 --------------~~-~~~H~~~V~~~~~~~~~~~l~s~s~D~~v~vWd~~~~-~~~~~~--------~~~~~~~~~~~  101 (313)
                                    .. ..+|...|.+++|+|++++|++| .|++|++||+++. +....+        .+...+.++.|
T Consensus       156 ~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  234 (447)
T 3dw8_B          156 VFRPMDLMVEASPRRIFANAHTYHINSISINSDYETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEF  234 (447)
T ss_dssp             EEEEEEEEEEEEEEEEECSCCSSCCCEEEECTTSSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEE
T ss_pred             cccchheeeeccceEEeccCCCcceEEEEEcCCCCEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEE
Confidence                          12 36899999999999999999998 7999999999843 343332        34567889999


Q ss_pred             ecCC--eEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCC------------ceEEEEEccCCCEEEEeeCC
Q 021399          102 AVGD--KLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQG------------RINRAVWGPLNRTIISAGED  167 (313)
Q Consensus       102 ~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~i~~~~~~~~~~~i~t~~~d  167 (313)
                      +|++  .++.+..+..      +.++++.....  ....+..+.+|..            .|.++.|+|+++++++++. 
T Consensus       235 ~p~~~~~l~s~~~dg~------i~iwd~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-  305 (447)
T 3dw8_B          235 HPNSCNTFVYSSSKGT------IRLCDMRASAL--CDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-  305 (447)
T ss_dssp             CSSCTTEEEEEETTSC------EEEEETTTCSS--SCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-
T ss_pred             CCCCCcEEEEEeCCCe------EEEEECcCCcc--ccceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC-
Confidence            9865  4444444433      33333321110  0111345566654            8999999999999999998 


Q ss_pred             CeEEEEECCC-CceeeecccccCceec---------------eEEEEECCCCCEEEEeeCCCcEEEEECCCCcEEEEE--
Q 021399          168 AIVRIWDTET-GKLLKESDKETGHKKT---------------ITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTY--  229 (313)
Q Consensus       168 ~~i~lwd~~~-~~~~~~~~~~~~h~~~---------------v~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~--  229 (313)
                      +.|++||+.+ ++++..+.   +|...               +..++|+|++.+|++|+.||.|++||+++++.+.-.  
T Consensus       306 ~~v~iwd~~~~~~~~~~~~---~~~~~~~~l~~~~~~~~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~  382 (447)
T 3dw8_B          306 LSVKVWDLNMENRPVETYQ---VHEYLRSKLCSLYENDCIFDKFECCWNGSDSVVMTGSYNNFFRMFDRNTKRDITLEAS  382 (447)
T ss_dssp             SEEEEEETTCCSSCSCCEE---SCGGGTTTHHHHHHTSGGGCCCCEEECTTSSEEEEECSTTEEEEEETTTCCEEEEECC
T ss_pred             CeEEEEeCCCCccccceee---ccccccccccccccccccccceEEEECCCCCEEEEeccCCEEEEEEcCCCcceeeeec
Confidence            9999999986 66555443   34321               334899999999999999999999999998876421  


Q ss_pred             -------------------------------ecCCceeEEEeccCCCEEEEccc
Q 021399          230 -------------------------------VTERPVNAVTMSPLLDHVVLGGG  252 (313)
Q Consensus       230 -------------------------------~~~~~~~~~~~~p~~~~~~~~~~  252 (313)
                                                     .....+..++|+|+++.+++++.
T Consensus       383 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~la~~~~  436 (447)
T 3dw8_B          383 RENNKPRTVLKPRKVCASGKRKKDEISVDSLDFNKKILHTAWHPKENIIAVATT  436 (447)
T ss_dssp             STTCCTTCBCCCCCEECSSCCCTTCEEGGGCCTTSCCCEEEECSSSSEEEEECS
T ss_pred             ccccccccccCCccccccCCcccccccccccccCCceeEEEECCCCCEEEEEec
Confidence                                           11235778999999998877654

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=99.97  E-value=9.7e-28  Score=212.01  Aligned_cols=277  Identities=10%  Similarity=0.059  Sum_probs=206.5

Q ss_pred             cceeEEEEccCCCEEEEeeCCCCeEEEeCCCCcEEE-----EecCCCCceEEEEECCCCCeEEEeeCCCcEEEEECCCCe
Q 021399           11 RPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLG-----TYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGA   85 (313)
Q Consensus        11 ~~v~~~~fs~~g~~l~s~s~d~~i~iw~~~~~~~~~-----~~~~H~~~V~~~~~~~~~~~l~s~s~D~~v~vWd~~~~~   85 (313)
                      ..+.+++|+|++.++++++.|+.|++||..+++.+.     .+.+|.+.|.+++|+++++++++++.|+.|++||+++++
T Consensus       123 ~~~~~~~~s~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~v~~~d~~~~~  202 (433)
T 3bws_A          123 FQPKSVRFIDNTRLAIPLLEDEGMDVLDINSGQTVRLSPPEKYKKKLGFVETISIPEHNELWVSQMQANAVHVFDLKTLA  202 (433)
T ss_dssp             SCBCCCEESSSSEEEEEBTTSSSEEEEETTTCCEEEECCCHHHHTTCCEEEEEEEGGGTEEEEEEGGGTEEEEEETTTCC
T ss_pred             CCceEEEEeCCCeEEEEeCCCCeEEEEECCCCeEeeecCcccccccCCceeEEEEcCCCEEEEEECCCCEEEEEECCCce
Confidence            346689999988888888899999999999998877     456899999999999999999999999999999999988


Q ss_pred             EEEEec-CCCCeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEccCCCEEEEe
Q 021399           86 QLFTFN-FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISA  164 (313)
Q Consensus        86 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~t~  164 (313)
                      .+..+. ....+..+.|.+++..+++....    ...+..+++.      .+..+..+.. ...+..+.|+|+++.++++
T Consensus       203 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~i~~~d~~------~~~~~~~~~~-~~~~~~~~~~~~g~~l~~~  271 (433)
T 3bws_A          203 YKATVDLTGKWSKILLYDPIRDLVYCSNWI----SEDISVIDRK------TKLEIRKTDK-IGLPRGLLLSKDGKELYIA  271 (433)
T ss_dssp             EEEEEECSSSSEEEEEEETTTTEEEEEETT----TTEEEEEETT------TTEEEEECCC-CSEEEEEEECTTSSEEEEE
T ss_pred             EEEEEcCCCCCeeEEEEcCCCCEEEEEecC----CCcEEEEECC------CCcEEEEecC-CCCceEEEEcCCCCEEEEE
Confidence            777665 45577888999876655333210    1122222221      2233334443 3458899999999999988


Q ss_pred             e--------CCCeEEEEECCCCceeeecccccCceeceEEEEECCCCCEE-EEeeCCCcEEEEECCCCcEEEEEecCCce
Q 021399          165 G--------EDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHF-LTGSLDKSAKLWDARTLELIKTYVTERPV  235 (313)
Q Consensus       165 ~--------~d~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l-~s~s~dg~i~iwd~~~~~~~~~~~~~~~~  235 (313)
                      +        .|+.|++||+.+++.+...    .|...+.+++|+|+++.+ ++++.|+.|++||+++++++..+.....+
T Consensus       272 ~~~~~~~~~~dg~i~~~d~~~~~~~~~~----~~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~  347 (433)
T 3bws_A          272 QFSASNQESGGGRLGIYSMDKEKLIDTI----GPPGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKEKKVQKSIPVFDKP  347 (433)
T ss_dssp             EEESCTTCSCCEEEEEEETTTTEEEEEE----EEEECEEEEEECSSTTEEEEEETTTTEEEEEETTTTEEEEEEECSSSE
T ss_pred             ECCCCccccCCCeEEEEECCCCcEEeec----cCCCCcceEEECCCCCEEEEEecCCCEEEEEECCCCcEEEEecCCCCC
Confidence            8        5889999999988766554    366788999999999754 66689999999999999998888777789


Q ss_pred             eEEEeccCCCEEEEcccccCce----eEeeccCCCceeeeeeehhhhhhhccccccccceeEEEECCCCCeeEEE
Q 021399          236 NAVTMSPLLDHVVLGGGQDASA----VTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKRYGFL  306 (313)
Q Consensus       236 ~~~~~~p~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~fspdgk~~~~~  306 (313)
                      ..++|+|++..++++.......    ++. ..  ....+++||..+++.+..+.+ ...+.+++|+|||+.++..
T Consensus       348 ~~~~~s~dg~~l~~~~~~~~~~~~~~~~~-g~--~dg~v~~~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~  418 (433)
T 3bws_A          348 NTIALSPDGKYLYVSCRGPNHPTEGYLKK-GL--VLGKVYVIDTTTDTVKEFWEA-GNQPTGLDVSPDNRYLVIS  418 (433)
T ss_dssp             EEEEECTTSSEEEEEECCCCCTTTCTTSC-CS--SCCEEEEEETTTTEEEEEEEC-SSSEEEEEECTTSCEEEEE
T ss_pred             CeEEEcCCCCEEEEEecCCCccccccccc-cc--cceEEEEEECCCCcEEEEecC-CCCCceEEEcCCCCEEEEE
Confidence            9999999999888765432100    000 00  011345666665555555544 4578999999999998654

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=99.97  E-value=1.8e-29  Score=220.83  Aligned_cols=217  Identities=9%  Similarity=0.036  Sum_probs=148.0

Q ss_pred             cccccccceeEEEEcc--------CCCEEEEeeCCCCeEEEeCCCCcEEEEecCCCCceEEEEECCCCC-eEEEeeCCCc
Q 021399            5 LMKGHERPLTYLKYNK--------DGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSM-TLITGSADQT   75 (313)
Q Consensus         5 ~l~~h~~~v~~~~fs~--------~g~~l~s~s~d~~i~iw~~~~~~~~~~~~~H~~~V~~~~~~~~~~-~l~s~s~D~~   75 (313)
                      .+.||++.|++++|+|        ||++|+|||.|++|+|||+.++..+..+.+|...|.+++|+|++. +|++++.|++
T Consensus       131 ~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~  210 (393)
T 4gq1_A          131 GKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWRLTDEGPILAGYPLSSPGISVQFRPSNPNQLIVGERNGN  210 (393)
T ss_dssp             TTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEEEETTEEEEEEEECSSCEEEEEEETTEEEEEEEEETTSE
T ss_pred             ccCCCCCceEEEEEccccccccCCCCCEEEEEECCCeEEEEECCCCceeeeecCCCCCcEEEEECCCCCceEEecCCCCE
Confidence            5889999999999998        899999999999999999999988888999999999999999874 8999999999


Q ss_pred             EEEEECCCCeEEEEecCCCCeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEc
Q 021399           76 AKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWG  155 (313)
Q Consensus        76 v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~  155 (313)
                      |++||+++++...........      ..........                     ..........+|...+..+.|.
T Consensus       211 v~~wd~~t~~~~~~~~~~~~~------~~~~~~s~~~---------------------~~~~~~~~~~~~~~~v~~v~~~  263 (393)
T 4gq1_A          211 IRIFDWTLNLSAEENSQTELV------KNPWLLTLNT---------------------LPLVNTCHSSGIASSLANVRWI  263 (393)
T ss_dssp             EEEEETTCCC----------C------SCCCSEEEES---------------------GGGC------CCSSSCSEEEEE
T ss_pred             EEEEECCCCcccccccccCCc------ccceEEeccc---------------------ccceeeeecccccccceeeeee
Confidence            999999987654332110000      0000000000                     0001122335677788888886


Q ss_pred             -cCCCEEEEeeCCCeEEEEECCCCceeeecccccCceeceEEEE------------------ECC--CCCEEEEeeCCCc
Q 021399          156 -PLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLA------------------KAA--DGSHFLTGSLDKS  214 (313)
Q Consensus       156 -~~~~~i~t~~~d~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~------------------~s~--~~~~l~s~s~dg~  214 (313)
                       |+++.+++++.|+.+++||+..++....+.   .|...+..+.                  +++  ++.++++|+.||+
T Consensus       264 ~~dg~~l~s~s~d~~i~vwd~~~~~~~~~l~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sgs~Dg~  340 (393)
T 4gq1_A          264 GSDGSGILAMCKSGAWLRWNLFANNDYNEIS---DSTMKLGPKNLLPNVQGISLFPSLLGACPHPRYMDYFATAHSQHGL  340 (393)
T ss_dssp             TTTTCEEEEECTTSEEEEEEC----------------------CCSCSEEEECSSCCSSCCEECSSCTTEEEEEETTTTE
T ss_pred             cCCCCEEEEEeCCCCEEEEECccCCCCceEe---eecCccccEEEccccccccccCcceeEEEccCCCCEEEEEECCCCE
Confidence             889999999999999999998766544332   2222222222                  222  4446788889999


Q ss_pred             EEEEECCCCcEEEEEe-cCCceeEEEeccCCCEEEEcc
Q 021399          215 AKLWDARTLELIKTYV-TERPVNAVTMSPLLDHVVLGG  251 (313)
Q Consensus       215 i~iwd~~~~~~~~~~~-~~~~~~~~~~~p~~~~~~~~~  251 (313)
                      |++||+.+++++..+. +..+|.+++|+|++..++++.
T Consensus       341 V~lwd~~~~~~~~~~~~~~~~V~svafspdG~~LA~as  378 (393)
T 4gq1_A          341 IQLINTYEKDSNSIPIQLGMPIVDFCWHQDGSHLAIAT  378 (393)
T ss_dssp             EEEEETTCTTCCEEEEECSSCEEEEEECTTSSEEEEEE
T ss_pred             EEEEECCCCcEEEEecCCCCcEEEEEEcCCCCEEEEEe
Confidence            9999999988766654 567899999999999887764

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=99.97  E-value=5.7e-27  Score=204.35  Aligned_cols=241  Identities=11%  Similarity=0.078  Sum_probs=185.4

Q ss_pred             ccccccceeEEEEccCCCEE-EEeeCCCCeEEEeCCCCcEEEEecCCCCceEEEEECCCCCeEE-EeeCCCcEEEEECCC
Q 021399            6 MKGHERPLTYLKYNKDGDLL-FSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLI-TGSADQTAKLWNVET   83 (313)
Q Consensus         6 l~~h~~~v~~~~fs~~g~~l-~s~s~d~~i~iw~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~-s~s~D~~v~vWd~~~   83 (313)
                      +.+|. .+.+++|+|+|++| ++++.|+.|++||..+++.+..+..|. .+.+++|+|+++.++ +++.|+.|++||+.+
T Consensus        28 ~~~~~-~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~~~~-~v~~~~~spdg~~l~~~~~~~~~v~v~d~~~  105 (391)
T 1l0q_A           28 IPVGS-NPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGS-SPQGVAVSPDGKQVYVTNMASSTLSVIDTTS  105 (391)
T ss_dssp             EECSS-SEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSS-SEEEEEECTTSSEEEEEETTTTEEEEEETTT
T ss_pred             eecCC-CcceEEECCCCCEEEEECCCCCeEEEEECCCCeEEEEEECCC-CccceEECCCCCEEEEEECCCCEEEEEECCC
Confidence            44554 58999999999987 677799999999999999998888766 899999999999764 555779999999999


Q ss_pred             CeEEEEecCCCCeeEEEeecCCeEE-EEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEccCCCEE-
Q 021399           84 GAQLFTFNFDSPARSVDFAVGDKLA-VITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTI-  161 (313)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i-  161 (313)
                      ++.+..+.....+..+.|+++++.+ +....     ...+.++++      ..++.+..+..+ ..+..+.|+|+++.+ 
T Consensus       106 ~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~-----~~~v~~~d~------~~~~~~~~~~~~-~~~~~~~~~~dg~~l~  173 (391)
T 1l0q_A          106 NTVAGTVKTGKSPLGLALSPDGKKLYVTNNG-----DKTVSVINT------VTKAVINTVSVG-RSPKGIAVTPDGTKVY  173 (391)
T ss_dssp             TEEEEEEECSSSEEEEEECTTSSEEEEEETT-----TTEEEEEET------TTTEEEEEEECC-SSEEEEEECTTSSEEE
T ss_pred             CeEEEEEeCCCCcceEEECCCCCEEEEEeCC-----CCEEEEEEC------CCCcEEEEEecC-CCcceEEECCCCCEEE
Confidence            9888777777778889999877655 33321     122223322      123344444444 456889999999877 


Q ss_pred             EEeeCCCeEEEEECCCCceeeecccccCceeceEEEEECCCCCEEEEee---CCCcEEEEECCCCcEEEEEecCCceeEE
Q 021399          162 ISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGS---LDKSAKLWDARTLELIKTYVTERPVNAV  238 (313)
Q Consensus       162 ~t~~~d~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s---~dg~i~iwd~~~~~~~~~~~~~~~~~~~  238 (313)
                      ++++.++.|++||+.+++....+.    +...+.+++|+|+++++++++   .|+.|++||+++++++..+.....+.++
T Consensus       174 ~~~~~~~~v~~~d~~~~~~~~~~~----~~~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~  249 (391)
T 1l0q_A          174 VANFDSMSISVIDTVTNSVIDTVK----VEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPVGPDPAGI  249 (391)
T ss_dssp             EEETTTTEEEEEETTTTEEEEEEE----CSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTEEEEEEECCSSEEEE
T ss_pred             EEeCCCCEEEEEECCCCeEEEEEe----cCCCccceEECCCCCEEEEEecCcCCCcEEEEECCCCeEEEEEecCCCccEE
Confidence            677889999999999887765543    456789999999999999988   6899999999999998888776678899


Q ss_pred             EeccCCCEEEEcccccCceeEeeccCC
Q 021399          239 TMSPLLDHVVLGGGQDASAVTTTDHRA  265 (313)
Q Consensus       239 ~~~p~~~~~~~~~~~~~~~~~~~~~~~  265 (313)
                      +|+|+++.++++++.+ +.+.+||...
T Consensus       250 ~~s~dg~~l~~s~~~d-~~v~v~d~~~  275 (391)
T 1l0q_A          250 AVTPDGKKVYVALSFX-NTVSVIDTAT  275 (391)
T ss_dssp             EECTTSSEEEEEETTT-TEEEEEETTT
T ss_pred             EEccCCCEEEEEcCCC-CEEEEEECCC
Confidence            9999999887765544 3344444433

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=99.97  E-value=5.2e-29  Score=224.70  Aligned_cols=202  Identities=13%  Similarity=0.059  Sum_probs=154.6

Q ss_pred             cccccccceeEEEEccC------CCEEEEeeCCCCeEEEeCCCCcE-----------EEEecCCCCceEEEEECCCCCeE
Q 021399            5 LMKGHERPLTYLKYNKD------GDLLFSCAKDHTPTVWFADNGER-----------LGTYRGHNGAVWCCDVSRDSMTL   67 (313)
Q Consensus         5 ~l~~h~~~v~~~~fs~~------g~~l~s~s~d~~i~iw~~~~~~~-----------~~~~~~H~~~V~~~~~~~~~~~l   67 (313)
                      ++.+|.+.|.+++|+|+      +.+|++++.|++|+|||+.++..           ..++.+|...|++++|++++ .|
T Consensus       202 ~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~~~v~sv~~s~~~-~l  280 (524)
T 2j04_B          202 TIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLSLADSLITTFDFLSPT-TV  280 (524)
T ss_dssp             EEEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEECCTTTCEEEEEESSSS-EE
T ss_pred             EEEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeecCceEEEEcCCCCEEEEEecCCC-eE
Confidence            46678899999999997      57999999999999999987642           24788999999999999864 89


Q ss_pred             EEeeCCCcEEEEECCCCe-EEEEe-cCCCCeeEE--EeecCC-e-EEEEECCCceeccccceeeeeeeCCCCCCCceEEE
Q 021399           68 ITGSADQTAKLWNVETGA-QLFTF-NFDSPARSV--DFAVGD-K-LAVITTDPFMELNSAIHVKRIARDPADQGGESVLI  141 (313)
Q Consensus        68 ~s~s~D~~v~vWd~~~~~-~~~~~-~~~~~~~~~--~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  141 (313)
                      ++|+.||+|++||+++++ +...+ .+..++.++  .+.+++ . ++.++.+....      +|++..      ......
T Consensus       281 asgs~DgtV~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~~g~~~laS~S~D~tvk------lWD~~~------~~~~~~  348 (524)
T 2j04_B          281 VCGFKNGFVAEFDLTDPEVPSFYDQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFY------IFNPKD------IATTKT  348 (524)
T ss_dssp             EEEETTSEEEEEETTBCSSCSEEEECSSSCEEEEEEECCTTSCCEEEEEETTSEEE------EECGGG------HHHHCE
T ss_pred             EEEeCCCEEEEEECCCCCCceEEeecccccEEEEEEEcCCCCCeEEEEeccCCeEE------EEECCC------CCcccc
Confidence            999999999999998763 22323 356678887  455653 4 45555554433      333221      111112


Q ss_pred             ecCCC--CceEEEEEccCCCEEEEeeCCCeEEEEECCCCceeeecccccCceeceEEEEECCCCCEEEEeeCCCcEEEEE
Q 021399          142 LKGPQ--GRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWD  219 (313)
Q Consensus       142 ~~~~~--~~i~~~~~~~~~~~i~t~~~d~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~dg~i~iwd  219 (313)
                      +.+|.  ..+.+++|+|+++.+++++.|++|++||++++.++..+.   +|...|++++|+|+|.+|++|+.||+|++||
T Consensus       349 ~~~~~~~~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~~~~~~~l~---gH~~~V~sva~Sp~g~~l~Sgs~Dgtv~lwd  425 (524)
T 2j04_B          349 TVSRFRGSNLVPVVYCPQIYSYIYSDGASSLRAVPSRAAFAVHPLV---SRETTITAIGVSRLHPMVLAGSADGSLIITN  425 (524)
T ss_dssp             EEEECSCCSCCCEEEETTTTEEEEECSSSEEEEEETTCTTCCEEEE---ECSSCEEEEECCSSCCBCEEEETTTEEECCB
T ss_pred             cccccccCcccceEeCCCcCeEEEeCCCCcEEEEECcccccceeee---cCCCceEEEEeCCCCCeEEEEECCCEEEEEe
Confidence            23333  247789999999999999999999999999887655443   6899999999999999999999999999998


Q ss_pred             CCC
Q 021399          220 ART  222 (313)
Q Consensus       220 ~~~  222 (313)
                      +..
T Consensus       426 ~~~  428 (524)
T 2j04_B          426 AAR  428 (524)
T ss_dssp             SCS
T ss_pred             chH
Confidence            643

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=99.97  E-value=9.7e-29  Score=212.24  Aligned_cols=185  Identities=10%  Similarity=0.045  Sum_probs=146.1

Q ss_pred             cceeEEEEccCCCEEEEeeCCCCeEEEeCC---------CCcEEEEec-CCCCceEEEEECC--CCCeEEEeeCCCcEEE
Q 021399           11 RPLTYLKYNKDGDLLFSCAKDHTPTVWFAD---------NGERLGTYR-GHNGAVWCCDVSR--DSMTLITGSADQTAKL   78 (313)
Q Consensus        11 ~~v~~~~fs~~g~~l~s~s~d~~i~iw~~~---------~~~~~~~~~-~H~~~V~~~~~~~--~~~~l~s~s~D~~v~v   78 (313)
                      ..|.++.|+|+   +++++.|+.|++|+..         +++.+..+. +|.+.|.+++|+|  +++++++++.|++|++
T Consensus        77 ~~v~~~~~~~~---~~s~s~D~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~  153 (343)
T 3lrv_A           77 PNPRTGGEHPA---IISRGPCNRLLLLYPGNQITILDSKTNKVLREIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGF  153 (343)
T ss_dssp             ECCCTTCCCCS---EEEECSTTEEEEEETTTEEEEEETTTCCEEEEEECCCSSCEEEEECCC---CCEEEEEETTCCEEE
T ss_pred             CCceeeeeCCc---eEEecCCCeEEEEEccCceEEeecCCcceeEEeecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEE
Confidence            56777888888   9999999999999655         555455554 7888999999999  9999999999999999


Q ss_pred             EECCCCeEEEEecCCCCeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEccCC
Q 021399           79 WNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLN  158 (313)
Q Consensus        79 Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~  158 (313)
                      ||+++++......                                                   ..+...+.++.|+|++
T Consensus       154 wd~~~~~~~~~~~---------------------------------------------------~~~~~~i~~~~~~pdg  182 (343)
T 3lrv_A          154 QSYEDDSQYIVHS---------------------------------------------------AKSDVEYSSGVLHKDS  182 (343)
T ss_dssp             EESSSSCEEEEEC---------------------------------------------------CCSSCCCCEEEECTTS
T ss_pred             EECCCCcEEEEEe---------------------------------------------------cCCCCceEEEEECCCC
Confidence            9998876532110                                                   1123457889999999


Q ss_pred             CEEEEeeCCCeEEEEECCCCcee-eecccccCceeceEEEEECCCCCEEEEeeCCCcEEEEECCCCcEEEEEec----CC
Q 021399          159 RTIISAGEDAIVRIWDTETGKLL-KESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVT----ER  233 (313)
Q Consensus       159 ~~i~t~~~d~~i~lwd~~~~~~~-~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~----~~  233 (313)
                      .++++|+.|+.|++||+++++.+ ..+..  +|...|++++|+|++.+|++++ |+.|++||+++++++..+..    ..
T Consensus       183 ~~lasg~~dg~i~iwd~~~~~~~~~~~~~--~h~~~v~~l~fs~~g~~l~s~~-~~~v~iwd~~~~~~~~~~~~~~~~~~  259 (343)
T 3lrv_A          183 LLLALYSPDGILDVYNLSSPDQASSRFPV--DEEAKIKEVKFADNGYWMVVEC-DQTVVCFDLRKDVGTLAYPTYTIPEF  259 (343)
T ss_dssp             CEEEEECTTSCEEEEESSCTTSCCEECCC--CTTSCEEEEEECTTSSEEEEEE-SSBEEEEETTSSTTCBSSCCCBC---
T ss_pred             CEEEEEcCCCEEEEEECCCCCCCccEEec--cCCCCEEEEEEeCCCCEEEEEe-CCeEEEEEcCCCCcceeecccccccc
Confidence            99999999999999999988766 44431  3889999999999999999999 55999999999877654431    12


Q ss_pred             cee--EEEeccCCCEEEEccc
Q 021399          234 PVN--AVTMSPLLDHVVLGGG  252 (313)
Q Consensus       234 ~~~--~~~~~p~~~~~~~~~~  252 (313)
                      ++.  +++|+|++..++++++
T Consensus       260 ~~~~~~~~~~~~g~~l~~~s~  280 (343)
T 3lrv_A          260 KTGTVTYDIDDSGKNMIAYSN  280 (343)
T ss_dssp             --CCEEEEECTTSSEEEEEET
T ss_pred             cccceEEEECCCCCEEEEecC
Confidence            333  6999999999887655

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=99.96  E-value=1.7e-27  Score=211.05  Aligned_cols=224  Identities=24%  Similarity=0.398  Sum_probs=178.2

Q ss_pred             ccccccccceeEEEEccCCCEEEEeeCCCCeEEEeCCCCcEEEEecCCCCceEEEEECCCCCeEEEeeCCCcEEEEECCC
Q 021399            4 ILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVET   83 (313)
Q Consensus         4 ~~l~~h~~~v~~~~fs~~g~~l~s~s~d~~i~iw~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~v~vWd~~~   83 (313)
                      ..+.+|...|.+++|  ++++|++|+.||.|++||+.+++.+.++.+|...|.+++|++  +.+++|+.|++|++||+.+
T Consensus       167 ~~~~~h~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~  242 (435)
T 1p22_A          167 RILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNN--GMMVTCSKDRSIAVWDMAS  242 (435)
T ss_dssp             EEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESSSCCEEEEECCCCSCEEEEECCT--TEEEEEETTSCEEEEECSS
T ss_pred             EEEcCCCCcEEEEEE--CCCEEEEEcCCCeEEEEECCCCcEEEEEcCCCCcEEEEEEcC--CEEEEeeCCCcEEEEeCCC
Confidence            367899999999998  788999999999999999999999999999999999999974  4899999999999999987


Q ss_pred             CeEE---EEe-cCCCCeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEccCCC
Q 021399           84 GAQL---FTF-NFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNR  159 (313)
Q Consensus        84 ~~~~---~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~  159 (313)
                      ++..   ... .+...+..+.+ .+..++.+..+..      +.++++      ..+..+..+.+|...+.++.++  ++
T Consensus       243 ~~~~~~~~~~~~~~~~v~~~~~-~~~~l~s~~~dg~------i~vwd~------~~~~~~~~~~~~~~~v~~~~~~--~~  307 (435)
T 1p22_A          243 PTDITLRRVLVGHRAAVNVVDF-DDKYIVSASGDRT------IKVWNT------STCEFVRTLNGHKRGIACLQYR--DR  307 (435)
T ss_dssp             SSCCEEEEEECCCSSCEEEEEE-ETTEEEEEETTSE------EEEEET------TTCCEEEEEECCSSCEEEEEEE--TT
T ss_pred             CCCceeeeEecCCCCcEEEEEe-CCCEEEEEeCCCe------EEEEEC------CcCcEEEEEcCCCCcEEEEEeC--CC
Confidence            7643   222 34556777777 4555555554433      233332      2345667788899999998884  67


Q ss_pred             EEEEeeCCCeEEEEECCCCceeeecccccCceeceEEEEECCCCCEEEEeeCCCcEEEEECCCCc---------EEEEEe
Q 021399          160 TIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLE---------LIKTYV  230 (313)
Q Consensus       160 ~i~t~~~d~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~---------~~~~~~  230 (313)
                      .+++|+.|+.|++||+.+++++..+.   +|...|.++++  ++.+|++|+.||.|++||+++++         ++..+.
T Consensus       308 ~l~~g~~dg~i~iwd~~~~~~~~~~~---~h~~~v~~~~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~  382 (435)
T 1p22_A          308 LVVSGSSDNTIRLWDIECGACLRVLE---GHEELVRCIRF--DNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLV  382 (435)
T ss_dssp             EEEEEETTSCEEEEETTTCCEEEEEC---CCSSCEEEEEC--CSSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEEC
T ss_pred             EEEEEeCCCeEEEEECCCCCEEEEEe---CCcCcEEEEEe--cCCEEEEEeCCCcEEEEECCCCCCccccccchheeecc
Confidence            99999999999999999988877654   68899999998  78899999999999999998765         777764


Q ss_pred             -cCCceeEEEeccCCCEEEEccccc
Q 021399          231 -TERPVNAVTMSPLLDHVVLGGGQD  254 (313)
Q Consensus       231 -~~~~~~~~~~~p~~~~~~~~~~~~  254 (313)
                       +...+.+++|  ++..+++ ++.|
T Consensus       383 ~h~~~v~~l~~--~~~~l~s-~s~D  404 (435)
T 1p22_A          383 EHSGRVFRLQF--DEFQIVS-SSHD  404 (435)
T ss_dssp             CCSSCCCCEEE--CSSCEEE-CCSS
T ss_pred             CCCCCeEEEEe--CCCEEEE-EeCC
Confidence             4567899998  4455544 4433

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=99.96  E-value=4.6e-27  Score=209.13  Aligned_cols=226  Identities=14%  Similarity=0.102  Sum_probs=179.7

Q ss_pred             ccccccceeEEEEccCCCEE-EEeeCCCCeEEEeCC--CCcEEEEec--CCCCceEEEEECCCCCeEEEeeCCCcEEEEE
Q 021399            6 MKGHERPLTYLKYNKDGDLL-FSCAKDHTPTVWFAD--NGERLGTYR--GHNGAVWCCDVSRDSMTLITGSADQTAKLWN   80 (313)
Q Consensus         6 l~~h~~~v~~~~fs~~g~~l-~s~s~d~~i~iw~~~--~~~~~~~~~--~H~~~V~~~~~~~~~~~l~s~s~D~~v~vWd   80 (313)
                      ..+|.+.|.+++|+|+|++| ++++.|+.|+|||+.  +++.+..+.  .|...|.+++|+|++++|++|+.|+.+++|+
T Consensus        98 ~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~g~v~~~~  177 (450)
T 2vdu_B           98 APPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAEDDTTVIIADKFGDVYSID  177 (450)
T ss_dssp             --CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEE
T ss_pred             CCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcCCCCEEEEEeCCCcEEEEe
Confidence            34677889999999999996 899999999999999  888888886  6778999999999999999999999999999


Q ss_pred             CCCCeEEE----Ee-cCCCCeeEEEeecC---CeEEEEECCCceeccccceeeeeeeCCCCCCCceEEE-ecCCCCceEE
Q 021399           81 VETGAQLF----TF-NFDSPARSVDFAVG---DKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLI-LKGPQGRINR  151 (313)
Q Consensus        81 ~~~~~~~~----~~-~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~  151 (313)
                      +.+++...    .+ .+...+.++.|+|+   +..++....     +..+.+|++..      +..+.. +.+|.+.|.+
T Consensus       178 ~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~-----d~~i~vwd~~~------~~~~~~~~~~h~~~v~~  246 (450)
T 2vdu_B          178 INSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDR-----DEHIKISHYPQ------CFIVDKWLFGHKHFVSS  246 (450)
T ss_dssp             TTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEET-----TSCEEEEEESC------TTCEEEECCCCSSCEEE
T ss_pred             cCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcC-----CCcEEEEECCC------CceeeeeecCCCCceEE
Confidence            98765432    22 24567889999998   766554432     23445555432      223333 5689999999


Q ss_pred             EEEccCCCEEEEeeCCCeEEEEECCCCceeeeccccc----------------------CceeceEEEEECCCCCEEEEe
Q 021399          152 AVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKET----------------------GHKKTITSLAKAADGSHFLTG  209 (313)
Q Consensus       152 ~~~~~~~~~i~t~~~d~~i~lwd~~~~~~~~~~~~~~----------------------~h~~~v~~~~~s~~~~~l~s~  209 (313)
                      ++|+ ++++|++++.|+.|++||+.+++++..+....                      .....+.+++++|++.+|+++
T Consensus       247 ~~~s-d~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~  325 (450)
T 2vdu_B          247 ICCG-KDYLLLSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKNLPFVAFF  325 (450)
T ss_dssp             EEEC-STTEEEEEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEECSSSSEEEEE
T ss_pred             EEEC-CCCEEEEEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEeCCCCEEEEE
Confidence            9999 99999999999999999999988766553210                      234578999999999999999


Q ss_pred             e-CCCcEEEEEC--CCC---cEEEEEecCCceeEEEeccC
Q 021399          210 S-LDKSAKLWDA--RTL---ELIKTYVTERPVNAVTMSPL  243 (313)
Q Consensus       210 s-~dg~i~iwd~--~~~---~~~~~~~~~~~~~~~~~~p~  243 (313)
                      + .|+.|++||+  .++   +++..+.....+.+++|+|.
T Consensus       326 ~~~d~~i~iw~~~~~~~~~l~~~~~~~~~~~v~~~~~~~~  365 (450)
T 2vdu_B          326 VEATKCIIILEMSEKQKGDLALKQIITFPYNVISLSAHND  365 (450)
T ss_dssp             ETTCSEEEEEEECSSSTTCEEEEEEEECSSCEEEEEEETT
T ss_pred             ECCCCeEEEEEeccCCCCceeeccEeccCCceEEEEecCC
Confidence            9 8999999999  555   66677766678999999994

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=99.96  E-value=1.1e-26  Score=202.52  Aligned_cols=254  Identities=13%  Similarity=0.115  Sum_probs=193.5

Q ss_pred             CEEEEeeCCCCeEEEeCCCCcEEEEecCCCCceEEEEECCCCCeE-EEeeCCCcEEEEECCCCeEEEEecCCCCeeEEEe
Q 021399           23 DLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTL-ITGSADQTAKLWNVETGAQLFTFNFDSPARSVDF  101 (313)
Q Consensus        23 ~~l~s~s~d~~i~iw~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l-~s~s~D~~v~vWd~~~~~~~~~~~~~~~~~~~~~  101 (313)
                      ..+++++.|+.|++||+++++.+..+..|.. +.+++|+|+++.+ ++++.|++|++||+.+++.+..+.....+..+.|
T Consensus         3 ~l~vs~~~d~~v~v~d~~~~~~~~~~~~~~~-~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~~~~~v~~~~~   81 (391)
T 1l0q_A            3 FAYIANSESDNISVIDVTSNKVTATIPVGSN-PMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGSSPQGVAV   81 (391)
T ss_dssp             EEEEEETTTTEEEEEETTTTEEEEEEECSSS-EEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSSSEEEEEE
T ss_pred             EEEEEcCCCCEEEEEECCCCeEEEEeecCCC-cceEEECCCCCEEEEECCCCCeEEEEECCCCeEEEEEECCCCccceEE
Confidence            4688899999999999999999999988754 8999999999865 7778999999999999998888877778889999


Q ss_pred             ecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEccCCCEE-EEeeCCCeEEEEECCCCce
Q 021399          102 AVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTI-ISAGEDAIVRIWDTETGKL  180 (313)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i-~t~~~d~~i~lwd~~~~~~  180 (313)
                      ++++..+++....    ...+.++++.      .++.+..+.. ...+..+.|+|+++.+ ++++.++.|++||+.+++.
T Consensus        82 spdg~~l~~~~~~----~~~v~v~d~~------~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~  150 (391)
T 1l0q_A           82 SPDGKQVYVTNMA----SSTLSVIDTT------SNTVAGTVKT-GKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAV  150 (391)
T ss_dssp             CTTSSEEEEEETT----TTEEEEEETT------TTEEEEEEEC-SSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEE
T ss_pred             CCCCCEEEEEECC----CCEEEEEECC------CCeEEEEEeC-CCCcceEEECCCCCEEEEEeCCCCEEEEEECCCCcE
Confidence            9977655433211    1222333221      2333444443 4467899999999977 6888899999999998887


Q ss_pred             eeecccccCceeceEEEEECCCCCEE-EEeeCCCcEEEEECCCCcEEEEEecCCceeEEEeccCCCEEEEcccc-cCcee
Q 021399          181 LKESDKETGHKKTITSLAKAADGSHF-LTGSLDKSAKLWDARTLELIKTYVTERPVNAVTMSPLLDHVVLGGGQ-DASAV  258 (313)
Q Consensus       181 ~~~~~~~~~h~~~v~~~~~s~~~~~l-~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~-~~~~~  258 (313)
                      +..+.    ....+.+++|+|+++++ ++++.|+.|++||+++++++..+.....+..++|+|++..+++++.. .... 
T Consensus       151 ~~~~~----~~~~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~-  225 (391)
T 1l0q_A          151 INTVS----VGRSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVKVEAAPSGIAVNPEGTKAYVTNVDKYFNT-  225 (391)
T ss_dssp             EEEEE----CCSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSSEEEEEEECTTSSEEEEEEECSSCCE-
T ss_pred             EEEEe----cCCCcceEEECCCCCEEEEEeCCCCEEEEEECCCCeEEEEEecCCCccceEECCCCCEEEEEecCcCCCc-
Confidence            66553    23457899999999987 67788999999999999998888777788999999999988877531 1223 


Q ss_pred             EeeccCCCceeeeeeehhhhhhhccccccccceeEEEECCCCCeeEE
Q 021399          259 TTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKRYGF  305 (313)
Q Consensus       259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~fspdgk~~~~  305 (313)
                                 +++||..+++.+..+..|. .+.+++|+|||+++.+
T Consensus       226 -----------v~~~d~~~~~~~~~~~~~~-~~~~~~~s~dg~~l~~  260 (391)
T 1l0q_A          226 -----------VSMIDTGTNKITARIPVGP-DPAGIAVTPDGKKVYV  260 (391)
T ss_dssp             -----------EEEEETTTTEEEEEEECCS-SEEEEEECTTSSEEEE
T ss_pred             -----------EEEEECCCCeEEEEEecCC-CccEEEEccCCCEEEE
Confidence                       4455555555555555554 4789999999998643

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=99.96  E-value=6.9e-28  Score=213.38  Aligned_cols=211  Identities=12%  Similarity=0.102  Sum_probs=163.7

Q ss_pred             cccccceeEEEEccCCCEEEEeeCCCCeEEEeCC---CCcEEEEecC------------CCCceEEEE--ECCCCCeEEE
Q 021399            7 KGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFAD---NGERLGTYRG------------HNGAVWCCD--VSRDSMTLIT   69 (313)
Q Consensus         7 ~~h~~~v~~~~fs~~g~~l~s~s~d~~i~iw~~~---~~~~~~~~~~------------H~~~V~~~~--~~~~~~~l~s   69 (313)
                      .+|...|.+++|+|++++|++|+.|+.|++||++   +++.+..+.+            +...+.++.  ++++++++++
T Consensus       108 ~~h~~~v~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  187 (437)
T 3gre_A          108 YDCSSTVTQITMIPNFDAFAVSSKDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVA  187 (437)
T ss_dssp             EECSSCEEEEEECTTSSEEEEEETTSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEE
T ss_pred             ccCCCCEEEEEEeCCCCEEEEEeCCCEEEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcCCCCEEEE
Confidence            3799999999999999999999999999999985   5555444332            456666666  5678999999


Q ss_pred             eeCCCcEEEEECCCCeEEEEec---CCCCeeEEEeecCCeEEEE-ECCCceeccccceeeeeeeCCCCCCCceEEEec-C
Q 021399           70 GSADQTAKLWNVETGAQLFTFN---FDSPARSVDFAVGDKLAVI-TTDPFMELNSAIHVKRIARDPADQGGESVLILK-G  144 (313)
Q Consensus        70 ~s~D~~v~vWd~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~  144 (313)
                      ++.|++|++||+++++.+..+.   +...+.++.|.+++..++. ..+.      .+.+|++.      .+..+..+. .
T Consensus       188 ~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg------~i~iwd~~------~~~~~~~~~~~  255 (437)
T 3gre_A          188 LTNLSRVIIFDIRTLERLQIIENSPRHGAVSSICIDEECCVLILGTTRG------IIDIWDIR------FNVLIRSWSFG  255 (437)
T ss_dssp             EETTSEEEEEETTTCCEEEEEECCGGGCCEEEEEECTTSCEEEEEETTS------CEEEEETT------TTEEEEEEBCT
T ss_pred             EeCCCeEEEEeCCCCeeeEEEccCCCCCceEEEEECCCCCEEEEEcCCC------eEEEEEcC------CccEEEEEecC
Confidence            9999999999999998887775   3578899999987665554 3333      23334332      234455554 6


Q ss_pred             CCCceEEEEEcc----CCCEEEEeeCCCeEEEEECCCCceeeecccc---------------------c--CceeceEEE
Q 021399          145 PQGRINRAVWGP----LNRTIISAGEDAIVRIWDTETGKLLKESDKE---------------------T--GHKKTITSL  197 (313)
Q Consensus       145 ~~~~i~~~~~~~----~~~~i~t~~~d~~i~lwd~~~~~~~~~~~~~---------------------~--~h~~~v~~~  197 (313)
                      |...|.++.|+|    ++.++++++.|+.|++||+.+++++..+...                     .  .|...|+++
T Consensus       256 ~~~~v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l  335 (437)
T 3gre_A          256 DHAPITHVEVCQFYGKNSVIVVGGSSKTFLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTI  335 (437)
T ss_dssp             TCEEEEEEEECTTTCTTEEEEEEESTTEEEEEEETTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCE
T ss_pred             CCCceEEEEeccccCCCccEEEEEcCCCcEEEEEcCCCcEEEEEEcCCCCCccceecccccccccceecccccCCceEEE
Confidence            778899996664    5779999999999999999988866554321                     1  277789999


Q ss_pred             EECCCCCEEEEeeCCCcEEEEECCCCcEEEEEe
Q 021399          198 AKAADGSHFLTGSLDKSAKLWDARTLELIKTYV  230 (313)
Q Consensus       198 ~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~  230 (313)
                      +|+ ++.+|++|+.|+.|++||+++++++..+.
T Consensus       336 ~~~-~~~~l~s~~~d~~i~~wd~~~~~~~~~~~  367 (437)
T 3gre_A          336 SVS-NDKILLTDEATSSIVMFSLNELSSSKAVI  367 (437)
T ss_dssp             EEE-TTEEEEEEGGGTEEEEEETTCGGGCEEEE
T ss_pred             EEC-CceEEEecCCCCeEEEEECCCcccceEEe
Confidence            999 78999999999999999999988766554

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=99.96  E-value=4.6e-28  Score=214.69  Aligned_cols=237  Identities=13%  Similarity=0.108  Sum_probs=166.5

Q ss_pred             cccccccceeEEEEcc-CCCEEEEeeCCCCeEEEeCCCCcEEEEecC--CCCceEEEEECCCCCeEEEeeCCCcEEEEEC
Q 021399            5 LMKGHERPLTYLKYNK-DGDLLFSCAKDHTPTVWFADNGERLGTYRG--HNGAVWCCDVSRDSMTLITGSADQTAKLWNV   81 (313)
Q Consensus         5 ~l~~h~~~v~~~~fs~-~g~~l~s~s~d~~i~iw~~~~~~~~~~~~~--H~~~V~~~~~~~~~~~l~s~s~D~~v~vWd~   81 (313)
                      .+.+|.+.|.+++|+| ++++|+||+.|++|++||++++........  +...+.+++|+|++++|++|+.||+|++||+
T Consensus       159 ~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~  238 (435)
T 4e54_B          159 KGIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQDFKGNILRVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNM  238 (435)
T ss_dssp             CCCSSSCCCCEEEECSSCTTEEEEECSSSCEEEEETTSCEEEEEECCSSCSCCCCCEEEETTTTEEEEECSSSBEEEEES
T ss_pred             EccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEeeccCCceeEEeccCCCCccEEEEEECCCCCEEEEEeCCCcEeeecc
Confidence            4678999999999998 689999999999999999987654433333  3445788999999999999999999999999


Q ss_pred             CCCeEEEEecCCCCeeEEEeecCCe-EE-EEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEccCCC
Q 021399           82 ETGAQLFTFNFDSPARSVDFAVGDK-LA-VITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNR  159 (313)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~  159 (313)
                      +.........+...+.++.|+|.+. ++ .+..+..      +.+|++....   .........+|...|.+++|+|++.
T Consensus       239 ~~~~~~~~~~h~~~v~~v~~~p~~~~~~~s~s~d~~------v~iwd~~~~~---~~~~~~~~~~h~~~v~~~~~spdg~  309 (435)
T 4e54_B          239 DGKELWNLRMHKKKVTHVALNPCCDWFLATASVDQT------VKIWDLRQVR---GKASFLYSLPHRHPVNAACFSPDGA  309 (435)
T ss_dssp             SSCBCCCSBCCSSCEEEEEECTTCSSEEEEEETTSB------CCEEETTTCC---SSSCCSBCCBCSSCEEECCBCTTSS
T ss_pred             CcceeEEEecccceEEeeeecCCCceEEEEecCcce------eeEEeccccc---ccceEEEeeeccccccceeECCCCC
Confidence            7543222223456788999998643 33 3334433      3334332111   1112223356888999999999999


Q ss_pred             EEEEeeCCCeEEEEECCCCceeeeccccc-Cc--eeceEEEEECCCCCEEEEee------------CCCcEEEEECCCCc
Q 021399          160 TIISAGEDAIVRIWDTETGKLLKESDKET-GH--KKTITSLAKAADGSHFLTGS------------LDKSAKLWDARTLE  224 (313)
Q Consensus       160 ~i~t~~~d~~i~lwd~~~~~~~~~~~~~~-~h--~~~v~~~~~s~~~~~l~s~s------------~dg~i~iwd~~~~~  224 (313)
                      +|++++.|+.|++||+.++.....+.... .+  ...+....|+|++..+++++            .++.|++||..+++
T Consensus       310 ~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~  389 (435)
T 4e54_B          310 RLLTTDQKSEIRVYSASQWDCPLGLIPHPHRHFQHLTPIKAAWHPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGK  389 (435)
T ss_dssp             EEEEEESSSCEEEEESSSSSSEEEECCCCCCCCSSSCCCBCEECSSSSCEEEECCCCTTSCCSSTTCCCCEEEECSSSCC
T ss_pred             eeEEEcCCCEEEEEECCCCccceEEecccccccccceeEEEEEcCCCCEEEEEEcCCCCeEEEEecCCCEEEEEECCCCc
Confidence            99999999999999998877654432211 01  11223345666666555543            24579999999999


Q ss_pred             EEEEEe--cCCceeEE-EeccCCCEEEEc
Q 021399          225 LIKTYV--TERPVNAV-TMSPLLDHVVLG  250 (313)
Q Consensus       225 ~~~~~~--~~~~~~~~-~~~p~~~~~~~~  250 (313)
                      ++..+.  +...+.++ +|+|++..++.+
T Consensus       390 ~~~~l~~~~~~~v~s~~~fspdg~~lasg  418 (435)
T 4e54_B          390 MMCQLYDPESSGISSLNEFNPMGDTLASA  418 (435)
T ss_dssp             EEEEECCSSCCCCCCEEEECTTSSCEEEE
T ss_pred             EEEEEeCCCCCcEEEEEEECCCCCEEEEE
Confidence            988875  33456666 699999876643

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=99.96  E-value=4.9e-28  Score=228.40  Aligned_cols=209  Identities=20%  Similarity=0.327  Sum_probs=166.8

Q ss_pred             ccccccccceeEEEEccC--CCEEEEeeCCCCeEEEeCCCCc--EEEEecCCCCceEEEEECCC--CCeEEEeeCCCcEE
Q 021399            4 ILMKGHERPLTYLKYNKD--GDLLFSCAKDHTPTVWFADNGE--RLGTYRGHNGAVWCCDVSRD--SMTLITGSADQTAK   77 (313)
Q Consensus         4 ~~l~~h~~~v~~~~fs~~--g~~l~s~s~d~~i~iw~~~~~~--~~~~~~~H~~~V~~~~~~~~--~~~l~s~s~D~~v~   77 (313)
                      ..+.+|.++|.+++|+|+  +++|++|+.||.|++||+.+++  .+..+.+|...|.+++|+|+  ++.+++|+.||+|+
T Consensus        47 ~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~  126 (753)
T 3jro_A           47 DTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVS  126 (753)
T ss_dssp             EEECCCSSCEEEEEECCTTSCSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEE
T ss_pred             eeccCCcCceEEEEecCCCCCCEEEEEeCCCeEEEEECCCCcccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEE
Confidence            367899999999999988  9999999999999999999987  67888999999999999999  99999999999999


Q ss_pred             EEECCCCeEEEEecCCCCeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEcc-
Q 021399           78 LWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGP-  156 (313)
Q Consensus        78 vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-  156 (313)
                      +||+.++...                                                  ....+.+|...|.++.|+| 
T Consensus       127 vwdl~~~~~~--------------------------------------------------~~~~~~~~~~~v~~l~~~p~  156 (753)
T 3jro_A          127 VVEFKENGTT--------------------------------------------------SPIIIDAHAIGVNSASWAPA  156 (753)
T ss_dssp             EEECCSSSCC--------------------------------------------------CCEEEECCSSCEEEEEECCC
T ss_pred             EEEeecCCCc--------------------------------------------------ceeEeecCCCceEEEEecCc
Confidence            9998765211                                                  0112234566777777777 


Q ss_pred             ------------CCCEEEEeeCCCeEEEEECCCCcee-eecccccCceeceEEEEECCC---CCEEEEeeCCCcEEEEEC
Q 021399          157 ------------LNRTIISAGEDAIVRIWDTETGKLL-KESDKETGHKKTITSLAKAAD---GSHFLTGSLDKSAKLWDA  220 (313)
Q Consensus       157 ------------~~~~i~t~~~d~~i~lwd~~~~~~~-~~~~~~~~h~~~v~~~~~s~~---~~~l~s~s~dg~i~iwd~  220 (313)
                                  ++..+++|+.||.|++||+.++... .......+|...|++++|+|+   +.+|++++.||.|++||+
T Consensus       157 ~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd~  236 (753)
T 3jro_A          157 TIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQ  236 (753)
T ss_dssp             C---------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEESSSCEEEEEE
T ss_pred             ccccccccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCCCCcEEEEEeccCCCCCCEEEEEecCCEEEEecC
Confidence                        5889999999999999998776321 111223468999999999999   899999999999999999


Q ss_pred             CCCcE-----EEE-EecCCceeEEEeccCCCEEEEcccccCceeEeeccC
Q 021399          221 RTLEL-----IKT-YVTERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHR  264 (313)
Q Consensus       221 ~~~~~-----~~~-~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~  264 (313)
                      ++++.     +.. ..+...+.+++|+|++..+++++.  ++.+.+|+.+
T Consensus       237 ~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~--Dg~I~vwd~~  284 (753)
T 3jro_A          237 DNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGG--DNKVTLWKEN  284 (753)
T ss_dssp             SSSSSCCBCCBSSSSCCSSCCCCEEECTTTCCEEEECS--SSCEECCBCC
T ss_pred             CCCCCcceeEEeccCCCCCceEEEEEcCCCCEEEEEcC--CCEEEEEecC
Confidence            98642     111 124557899999999998777654  3346667654

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=99.96  E-value=3.7e-26  Score=193.25  Aligned_cols=233  Identities=17%  Similarity=0.263  Sum_probs=178.7

Q ss_pred             cccccccceeEEEEccCCCEEEEeeCCCCeEEEeCCCCcEEEEecCCCCceEEEEECCCCCeEEEeeCCCcEEEEECCCC
Q 021399            5 LMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETG   84 (313)
Q Consensus         5 ~l~~h~~~v~~~~fs~~g~~l~s~s~d~~i~iw~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~v~vWd~~~~   84 (313)
                      .+.+|...|.+++|+|+|++|++|+.|+.|++|+.++++.+.++.+|...+.++++  +++.+++++.++.+++|+....
T Consensus        62 ~~~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~~~~~~~~h~~~~~~~~~--~~~~l~s~~~~~~~~~~~~~~~  139 (318)
T 4ggc_A           62 QMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSW--NSYILSSGSRSGHIHHHDVRVA  139 (318)
T ss_dssp             ECCSTTCCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEE--ETTEEEEEETTSEEEEEETTSS
T ss_pred             EecCCCCeEEEEEECCCCCEEEEEECCCcEEEeecCCceeEEEecCccceEEEeec--CCCEEEEEecCCceEeeecCCC
Confidence            45688899999999999999999999999999999999999999999999987665  4679999999999999998765


Q ss_pred             eE-EEEe-cCCCCeeEEEeecCCeEEEE-ECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEccCCCEE
Q 021399           85 AQ-LFTF-NFDSPARSVDFAVGDKLAVI-TTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTI  161 (313)
Q Consensus        85 ~~-~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i  161 (313)
                      .. +... .+......+.+.+.+..++. ..+..      +.++++....  ...........+.+.+..+.++|.+..+
T Consensus       140 ~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~------i~iwd~~~~~--~~~~~~~~~~~~~~~v~~~~~~~~~~~~  211 (318)
T 4ggc_A          140 EHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNL------VNVWPSAPGE--GGWVPLQTFTQHQGAVKAVAWCPWQSNV  211 (318)
T ss_dssp             SCEEEEEECCSSCEEEEEECTTSSEEEEEETTSC------EEEEESSCBT--TBSCCSEEECCCCSCEEEEEECTTSTTE
T ss_pred             ceeEEEEcCccCceEEEEEcCCCCEEEEEecCcc------eeEEECCCCc--ccccceeeecccCCceEEEEecCCCCcE
Confidence            43 3333 34556777777776554443 33332      3334332211  1112234455677889999999876543


Q ss_pred             ---EEeeCCCeEEEEECCCCceeeecccccCceeceEEEEECCCCCEEEEee--CCCcEEEEECCCCcEEEEEe-cCCce
Q 021399          162 ---ISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGS--LDKSAKLWDARTLELIKTYV-TERPV  235 (313)
Q Consensus       162 ---~t~~~d~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s--~dg~i~iwd~~~~~~~~~~~-~~~~~  235 (313)
                         ++++.++.|++||..........    .+...+..+.+++++..+++++  .|+.|++||+++++++.++. +...|
T Consensus       212 ~~~~~~~~~~~i~lwd~~~~~~~~~~----~~~~~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~~~~~~~l~gH~~~V  287 (318)
T 4ggc_A          212 LATGGGTSDRHIRIWNVCSGACLSAV----DAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRV  287 (318)
T ss_dssp             EEEEECTTTCEEEEEETTTCCEEEEE----ECSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCCSSCE
T ss_pred             EEEEecCCCCEEEEEecccccccccc----cceeeeeeeeecccccceEEEEEcCCCEEEEEECCCCcEEEEEcCCCCCE
Confidence               46778899999999887765443    3567799999999999887755  79999999999999999986 56789


Q ss_pred             eEEEeccCCCEEEEcc
Q 021399          236 NAVTMSPLLDHVVLGG  251 (313)
Q Consensus       236 ~~~~~~p~~~~~~~~~  251 (313)
                      .+++|+|++..+++++
T Consensus       288 ~~l~~spdg~~l~S~s  303 (318)
T 4ggc_A          288 LSLTMSPDGATVASAA  303 (318)
T ss_dssp             EEEEECTTSSCEEEEE
T ss_pred             EEEEEcCCCCEEEEEe
Confidence            9999999998876654

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=99.96  E-value=6.7e-27  Score=206.94  Aligned_cols=198  Identities=17%  Similarity=0.291  Sum_probs=160.2

Q ss_pred             cccccccceeEEEEccCCC-EEEEeeCCCCeEEEeCCCCcE-------EEEecCCCCceEEEEECC-CCCeEEEeeCCCc
Q 021399            5 LMKGHERPLTYLKYNKDGD-LLFSCAKDHTPTVWFADNGER-------LGTYRGHNGAVWCCDVSR-DSMTLITGSADQT   75 (313)
Q Consensus         5 ~l~~h~~~v~~~~fs~~g~-~l~s~s~d~~i~iw~~~~~~~-------~~~~~~H~~~V~~~~~~~-~~~~l~s~s~D~~   75 (313)
                      .+.+|...|.+++|+|+++ +|++|+.||.|++|++.++..       ...+.+|...|.+++|+| ++.+|++++.|+.
T Consensus       176 ~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~  255 (430)
T 2xyi_A          176 RLRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQK  255 (430)
T ss_dssp             EEECCSSCCCCEEECTTSTTEEEEECTTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSE
T ss_pred             EecCCCCCeEEEEeCCCCCCeEEEEeCCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCe
Confidence            5788999999999999998 999999999999999987422       456789999999999999 6779999999999


Q ss_pred             EEEEECCCCeEEEEecCCCCeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEc
Q 021399           76 AKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWG  155 (313)
Q Consensus        76 v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~  155 (313)
                      |++||++++..                                                 ...+..+..|...++++.|+
T Consensus       256 i~i~d~~~~~~-------------------------------------------------~~~~~~~~~~~~~v~~i~~~  286 (430)
T 2xyi_A          256 LMIWDTRNNNT-------------------------------------------------SKPSHTVDAHTAEVNCLSFN  286 (430)
T ss_dssp             EEEEETTCSCS-------------------------------------------------SSCSEEEECCSSCEEEEEEC
T ss_pred             EEEEECCCCCC-------------------------------------------------CcceeEeecCCCCeEEEEeC
Confidence            99999986420                                                 00112234577889999999


Q ss_pred             cCCC-EEEEeeCCCeEEEEECCCC-ceeeecccccCceeceEEEEECCCCC-EEEEeeCCCcEEEEECCC----------
Q 021399          156 PLNR-TIISAGEDAIVRIWDTETG-KLLKESDKETGHKKTITSLAKAADGS-HFLTGSLDKSAKLWDART----------  222 (313)
Q Consensus       156 ~~~~-~i~t~~~d~~i~lwd~~~~-~~~~~~~~~~~h~~~v~~~~~s~~~~-~l~s~s~dg~i~iwd~~~----------  222 (313)
                      |.++ .+++|+.|+.|++||+++. .++..+   .+|...|.+++|+|++. .|++++.|+.|++||++.          
T Consensus       287 p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~---~~h~~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~  363 (430)
T 2xyi_A          287 PYSEFILATGSADKTVALWDLRNLKLKLHSF---ESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDA  363 (430)
T ss_dssp             SSCTTEEEEEETTSEEEEEETTCTTSCSEEE---ECCSSCEEEEEECSSCTTEEEEEETTSCCEEEEGGGTTCCCCHHHH
T ss_pred             CCCCCEEEEEeCCCeEEEEeCCCCCCCeEEe---ecCCCCEEEEEECCCCCCEEEEEeCCCcEEEEeCCCCccccCcccc
Confidence            9887 6889999999999999873 444443   35889999999999985 699999999999999987          


Q ss_pred             ----CcEEEEEe-cCCceeEEEeccCCCEEEEccccc
Q 021399          223 ----LELIKTYV-TERPVNAVTMSPLLDHVVLGGGQD  254 (313)
Q Consensus       223 ----~~~~~~~~-~~~~~~~~~~~p~~~~~~~~~~~~  254 (313)
                          .+++..+. +...+.+++|+|++..++++++.+
T Consensus       364 ~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~d  400 (430)
T 2xyi_A          364 EDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSED  400 (430)
T ss_dssp             HHCCTTEEEECCCCSSCEEEEEECSSSTTEEEEEETT
T ss_pred             ccCCcceEEEcCCCCCCceEEEECCCCCCEEEEEECC
Confidence                24555543 355799999999998556555544

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=99.96  E-value=1.2e-26  Score=194.36  Aligned_cols=243  Identities=11%  Similarity=0.056  Sum_probs=162.4

Q ss_pred             EEEEccCCC---EEEEeeCCCCeEEEeCCCC---cEEEEecCCCCc-------------------------eEEEEECCC
Q 021399           15 YLKYNKDGD---LLFSCAKDHTPTVWFADNG---ERLGTYRGHNGA-------------------------VWCCDVSRD   63 (313)
Q Consensus        15 ~~~fs~~g~---~l~s~s~d~~i~iw~~~~~---~~~~~~~~H~~~-------------------------V~~~~~~~~   63 (313)
                      ++.|-.-|-   -++++++ ..|++|+..++   +.++++.+|+.+                         |.+++++|+
T Consensus        44 ~~~~~~~~~~~~~~~~~~~-~~v~lw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~sla~spd  122 (356)
T 2w18_A           44 AMFWERAGCKEPCIITACE-DVVSLWKALDAWQWEKLYTWHFAEVPVLQIVPVPDVYNLVCVALGNLEIREIRALFCSSD  122 (356)
T ss_dssp             EEEEC----CEEEEEEEES-SEEEEEEESSSSBEEEEEEEECCSSCEEEECCCTTCCSCEEEEECSSSEEEEEEECC---
T ss_pred             eeeeccCCCCccEEEEecc-ceEEEcccCCCccceeeEEEeccCceeEEEEEcCcccceeeeeeccccccceEEEEECCC
Confidence            444544333   6777775 68999999999   888999888864                         456666777


Q ss_pred             ----CCeEEEeeCCCcEEEEECCCCeEEEEec--CCCCeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCc
Q 021399           64 ----SMTLITGSADQTAKLWNVETGAQLFTFN--FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGE  137 (313)
Q Consensus        64 ----~~~l~s~s~D~~v~vWd~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  137 (313)
                          ++.+++++.+  +++|++.+++.+....  +...+..+.+++++                               +
T Consensus       123 ~~~~~~~l~s~g~~--~~v~~l~~g~lv~ss~~g~d~~V~~~~~s~dG-------------------------------~  169 (356)
T 2w18_A          123 DESEKQVLLKSGNI--KAVLGLTKRRLVSSSGTLSDQQVEVMTFAEDG-------------------------------G  169 (356)
T ss_dssp             ---CCEEEEEEEEE--EEEEEETTTEEEEEESSSTTCEEEEEEECTTS-------------------------------C
T ss_pred             ccccccEEEeCCCe--EEEEecCCCcEEEecccCCCCcEEEEEECCCC-------------------------------c
Confidence                7778887744  7788888777665532  33444444444322                               2


Q ss_pred             eEEEecCCCCceEEEEEcc---CCCEEEEeeCCCeEEEEECCCCceeeecccccCceeceEEEEECCCCCEE--------
Q 021399          138 SVLILKGPQGRINRAVWGP---LNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHF--------  206 (313)
Q Consensus       138 ~~~~~~~~~~~i~~~~~~~---~~~~i~t~~~d~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l--------  206 (313)
                      .+..+.+|...+..++|+|   +++.|++++.|++|+|||++++++++++.....+...+.+++|+|+|.++        
T Consensus       170 ~~~s~~~~~~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~~  249 (356)
T 2w18_A          170 GKENQFLMPPEETILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQLLKKMHIDDSYQASVCHKAYSEMGLLFIVLSHPCA  249 (356)
T ss_dssp             EEEEEEECCCSSCEEEEEEEETSTTEEEEEETTSEEEEEETTTCCEEEEEECCC---CCCEEEEEEETTEEEEEEC----
T ss_pred             eeeeeccCCCceeeEEeeccCCCCceEEEecCCCcEEEEECCCCcEEEEEcCCCcceeeeEEEEECCCCCEEEEeccCCC
Confidence            3344556777888889998   67999999999999999999999988875322234578888999999986        


Q ss_pred             ----EEeeCCCcEEEEECCCCcEEEEEe----cCCceeEEEeccCCCEEEEcccccCceeEeeccCCCceeeeeeehhhh
Q 021399          207 ----LTGSLDKSAKLWDARTLELIKTYV----TERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQ  278 (313)
Q Consensus       207 ----~s~s~dg~i~iwd~~~~~~~~~~~----~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  278 (313)
                          ++|+.|++|++||.++++++..+.    ..+....++.+..+. ++++++.|.             .+++||..++
T Consensus       250 ~w~laSGs~D~tIklWd~~tgk~l~v~~~~~p~Gh~~~~lsg~~sg~-~lASgS~Dg-------------TIkIWDl~tG  315 (356)
T 2w18_A          250 KESESLRSPVFQLIVINPKTTLSVGVMLYCLPPGQAGRFLEGDVKDH-CAAAILTSG-------------TIAIWDLLLG  315 (356)
T ss_dssp             --------CCEEEEEEETTTTEEEEEEEECCCTTCCCCEEEEEEETT-EEEEEETTS-------------CEEEEETTTC
T ss_pred             cceeeccCCCcEEEEEECCCCEEEEEEEeeccCCCcceeEccccCCC-EEEEEcCCC-------------cEEEEECCCC
Confidence                678899999999999999876552    111111222222222 344444332             3678999889


Q ss_pred             hhhcccccccccee-EEEECCCCCeeEE
Q 021399          279 EEIGGVKGHFGPIN-ALAFNPDGKRYGF  305 (313)
Q Consensus       279 ~~~~~~~~h~~~V~-~~~fspdgk~~~~  305 (313)
                      +.+..+.+|...+. .++|||||++++.
T Consensus       316 k~l~tL~gH~~~vvs~vafSPDG~~LaS  343 (356)
T 2w18_A          316 QCTALLPPVSDQHWSFVKWSGTDSHLLA  343 (356)
T ss_dssp             SEEEEECCC--CCCCEEEECSSSSEEEE
T ss_pred             cEEEEecCCCCCeEEEEEECCCCCEEEE
Confidence            88889999988765 5899999998774

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=99.96  E-value=6.3e-27  Score=195.95  Aligned_cols=199  Identities=15%  Similarity=0.150  Sum_probs=139.2

Q ss_pred             cceeEEEEccC----CCEEEEeeC--------------------CCCeEEEeC-CCCcEEEEecCCCCceEEEEECC---
Q 021399           11 RPLTYLKYNKD----GDLLFSCAK--------------------DHTPTVWFA-DNGERLGTYRGHNGAVWCCDVSR---   62 (313)
Q Consensus        11 ~~v~~~~fs~~----g~~l~s~s~--------------------d~~i~iw~~-~~~~~~~~~~~H~~~V~~~~~~~---   62 (313)
                      ..|+.++|+||    ++++++++.                    |+.|++|++ .+++.+..+.+|...+..++|++   
T Consensus       112 ~~v~sla~spd~~~~~~~l~s~g~~~~v~~l~~g~lv~ss~~g~d~~V~~~~~s~dG~~~~s~~~~~~~v~~l~fs~~~g  191 (356)
T 2w18_A          112 REIRALFCSSDDESEKQVLLKSGNIKAVLGLTKRRLVSSSGTLSDQQVEVMTFAEDGGGKENQFLMPPEETILTFAEVQG  191 (356)
T ss_dssp             EEEEEECC------CCEEEEEEEEEEEEEEETTTEEEEEESSSTTCEEEEEEECTTSCEEEEEEECCCSSCEEEEEEEET
T ss_pred             cceEEEEECCCccccccEEEeCCCeEEEEecCCCcEEEecccCCCCcEEEEEECCCCceeeeeccCCCceeeEEeeccCC
Confidence            36777888888    778887663                    888888888 45777778888888888888888   


Q ss_pred             CCCeEEEeeCCCcEEEEECCCCeEEEEecC----CCCeeEEEeecCCeEEEEECCCc-------eeccccceeeeeeeCC
Q 021399           63 DSMTLITGSADQTAKLWNVETGAQLFTFNF----DSPARSVDFAVGDKLAVITTDPF-------MELNSAIHVKRIARDP  131 (313)
Q Consensus        63 ~~~~l~s~s~D~~v~vWd~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~  131 (313)
                      ++++|+|+|.|++|||||+.+++++.++..    ...+..+.|+|+++.++....+.       ...+..++.++.    
T Consensus       192 ~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~tIklWd~----  267 (356)
T 2w18_A          192 MQEALLGTTIMNNIVIWNLKTGQLLKKMHIDDSYQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQLIVINP----  267 (356)
T ss_dssp             STTEEEEEETTSEEEEEETTTCCEEEEEECCC---CCCEEEEEEETTEEEEEEC------------CCEEEEEEET----
T ss_pred             CCceEEEecCCCcEEEEECCCCcEEEEEcCCCcceeeeEEEEECCCCCEEEEeccCCCcceeeccCCCcEEEEEEC----
Confidence            668999999999999999999998888752    12455668999888776544211       011111222221    


Q ss_pred             CCCCCceEEEe-----cCCCCceEEEEEccCCCEEEEeeCCCeEEEEECCCCceeeecccccCceeceE-EEEECCCCCE
Q 021399          132 ADQGGESVLIL-----KGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTIT-SLAKAADGSH  205 (313)
Q Consensus       132 ~~~~~~~~~~~-----~~~~~~i~~~~~~~~~~~i~t~~~d~~i~lwd~~~~~~~~~~~~~~~h~~~v~-~~~~s~~~~~  205 (313)
                        ..+..+..+     .+|.+.+.+.  +..+..+++++.|++|+|||+.+++++.++.   +|...+. +++|+|||++
T Consensus       268 --~tgk~l~v~~~~~p~Gh~~~~lsg--~~sg~~lASgS~DgTIkIWDl~tGk~l~tL~---gH~~~vvs~vafSPDG~~  340 (356)
T 2w18_A          268 --KTTLSVGVMLYCLPPGQAGRFLEG--DVKDHCAAAILTSGTIAIWDLLLGQCTALLP---PVSDQHWSFVKWSGTDSH  340 (356)
T ss_dssp             --TTTEEEEEEEECCCTTCCCCEEEE--EEETTEEEEEETTSCEEEEETTTCSEEEEEC---CC--CCCCEEEECSSSSE
T ss_pred             --CCCEEEEEEEeeccCCCcceeEcc--ccCCCEEEEEcCCCcEEEEECCCCcEEEEec---CCCCCeEEEEEECCCCCE
Confidence              122332222     3555444333  3336789999999999999999999887764   5766554 6899999999


Q ss_pred             EEEeeCCCcEEEEEC
Q 021399          206 FLTGSLDKSAKLWDA  220 (313)
Q Consensus       206 l~s~s~dg~i~iwd~  220 (313)
                      |+||+.|++|||||+
T Consensus       341 LaSGS~D~TIklWd~  355 (356)
T 2w18_A          341 LLAGQKDGNIFVYHY  355 (356)
T ss_dssp             EEEECTTSCEEEEEE
T ss_pred             EEEEECCCcEEEecC
Confidence            999999999999985

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=99.95  E-value=1.7e-25  Score=197.67  Aligned_cols=239  Identities=12%  Similarity=0.019  Sum_probs=186.8

Q ss_pred             cccccccceeEEEEccCCCEEEEeeCCCCeEEEeCCCCcEEEEecCCCCceEEEEECCCCCeE-EEeeCCCcEEEEECCC
Q 021399            5 LMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTL-ITGSADQTAKLWNVET   83 (313)
Q Consensus         5 ~l~~h~~~v~~~~fs~~g~~l~s~s~d~~i~iw~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l-~s~s~D~~v~vWd~~~   83 (313)
                      .+.+|...|.+++|+|++.++++++.|+.|++||.++++.+.++..|...+.+++|+|+++.+ ++++.|+.|++||+.+
T Consensus       164 ~~~~~~~~v~~~~~~~~~~~~~s~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~  243 (433)
T 3bws_A          164 KYKKKLGFVETISIPEHNELWVSQMQANAVHVFDLKTLAYKATVDLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKT  243 (433)
T ss_dssp             HHHTTCCEEEEEEEGGGTEEEEEEGGGTEEEEEETTTCCEEEEEECSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTT
T ss_pred             cccccCCceeEEEEcCCCEEEEEECCCCEEEEEECCCceEEEEEcCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCC
Confidence            456899999999999999999999999999999999999999999999999999999999877 4555899999999999


Q ss_pred             CeEEEEecCCCCeeEEEeecCCeEEEEECCCcee---ccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEccCCCE
Q 021399           84 GAQLFTFNFDSPARSVDFAVGDKLAVITTDPFME---LNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRT  160 (313)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~  160 (313)
                      ++.+..+.....+..+.+.+++..+++.......   .+..+..+++.      .++.+. ...+...+..++|+|+++.
T Consensus       244 ~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~------~~~~~~-~~~~~~~~~~~~~~~~g~~  316 (433)
T 3bws_A          244 KLEIRKTDKIGLPRGLLLSKDGKELYIAQFSASNQESGGGRLGIYSMD------KEKLID-TIGPPGNKRHIVSGNTENK  316 (433)
T ss_dssp             TEEEEECCCCSEEEEEEECTTSSEEEEEEEESCTTCSCCEEEEEEETT------TTEEEE-EEEEEECEEEEEECSSTTE
T ss_pred             CcEEEEecCCCCceEEEEcCCCCEEEEEECCCCccccCCCeEEEEECC------CCcEEe-eccCCCCcceEEECCCCCE
Confidence            9888777666667888898877555443210000   01122222221      122222 2234457788999999975


Q ss_pred             E-EEeeCCCeEEEEECCCCceeeecccccCceeceEEEEECCCCCEEEEeeC---------------CCcEEEEECCCCc
Q 021399          161 I-ISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSL---------------DKSAKLWDARTLE  224 (313)
Q Consensus       161 i-~t~~~d~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~---------------dg~i~iwd~~~~~  224 (313)
                      + ++++.|+.|++||+.+++.+..+.    +...+.+++|+|+++++++++.               ||.|++||+++++
T Consensus       317 l~~~~~~~~~v~v~d~~~~~~~~~~~----~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~  392 (433)
T 3bws_A          317 IYVSDMCCSKIEVYDLKEKKVQKSIP----VFDKPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDT  392 (433)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEEEE----CSSSEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTE
T ss_pred             EEEEecCCCEEEEEECCCCcEEEEec----CCCCCCeEEEcCCCCEEEEEecCCCccccccccccccceEEEEEECCCCc
Confidence            4 667899999999999887765543    5567899999999999988876               5799999999999


Q ss_pred             EEEEEecCCceeEEEeccCCCEEEEccccc
Q 021399          225 LIKTYVTERPVNAVTMSPLLDHVVLGGGQD  254 (313)
Q Consensus       225 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~  254 (313)
                      .+..+.....+..++|+|++..+++++..+
T Consensus       393 ~~~~~~~~~~~~~~~~s~dg~~l~~~~~~d  422 (433)
T 3bws_A          393 VKEFWEAGNQPTGLDVSPDNRYLVISDFLD  422 (433)
T ss_dssp             EEEEEECSSSEEEEEECTTSCEEEEEETTT
T ss_pred             EEEEecCCCCCceEEEcCCCCEEEEEECCC
Confidence            988887777889999999999888765433

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=99.95  E-value=3.3e-25  Score=193.63  Aligned_cols=250  Identities=14%  Similarity=0.214  Sum_probs=181.4

Q ss_pred             cccccceeEEEEcc-CCCEEEEeeCCCCeEEEeCCCCcEEEEecCCCCceEEEEECCCC---CeEEEeeCCCcEEEEECC
Q 021399            7 KGHERPLTYLKYNK-DGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDS---MTLITGSADQTAKLWNVE   82 (313)
Q Consensus         7 ~~h~~~v~~~~fs~-~g~~l~s~s~d~~i~iw~~~~~~~~~~~~~H~~~V~~~~~~~~~---~~l~s~s~D~~v~vWd~~   82 (313)
                      .+|...|.+++|+| ++.+|++++.|+.|++||+.+++....+. |...+.++.+++.+   .++++++.|+.|++||++
T Consensus        96 ~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~  174 (408)
T 4a11_B           96 DVHRYSVETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQTADVFN-FEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLK  174 (408)
T ss_dssp             TCCSSCEEEEEECTTCTTCEEEEETTSEEEEEETTTTEEEEEEE-CSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESS
T ss_pred             ccCCCcEEEEEEccCCCcEEEEEeCCCeEEEeeCCCCccceecc-CCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCC
Confidence            46999999999999 77899999999999999999999887776 78889999998854   499999999999999999


Q ss_pred             CCeEEEEec-CCCCeeEEEeecCCe--EEEEECCCceeccccceeeeeeeCC----------CCCCCceEEEecCCCCce
Q 021399           83 TGAQLFTFN-FDSPARSVDFAVGDK--LAVITTDPFMELNSAIHVKRIARDP----------ADQGGESVLILKGPQGRI  149 (313)
Q Consensus        83 ~~~~~~~~~-~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~i  149 (313)
                      +++.+..+. +..++..+.|.+++.  ++.+..+....      ++++....          .............|...|
T Consensus       175 ~~~~~~~~~~~~~~v~~~~~~~~~~~ll~~~~~dg~i~------i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v  248 (408)
T 4a11_B          175 SGSCSHILQGHRQEILAVSWSPRYDYILATASADSRVK------LWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKV  248 (408)
T ss_dssp             SSCCCEEECCCCSCEEEEEECSSCTTEEEEEETTSCEE------EEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCE
T ss_pred             CcceeeeecCCCCcEEEEEECCCCCcEEEEEcCCCcEE------EEECCCCCcccccccccccccceeeccccccccCce
Confidence            888776665 566788999998765  44444444332      22221100          000000111124678899


Q ss_pred             EEEEEccCCCEEEEeeCCCeEEEEECCCCceeeecccc--cCceeceEEEEECCCCCEEEEeeCCCcEEEEECCCCcEEE
Q 021399          150 NRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKE--TGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIK  227 (313)
Q Consensus       150 ~~~~~~~~~~~i~t~~~d~~i~lwd~~~~~~~~~~~~~--~~h~~~v~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~  227 (313)
                      .++.|+|+++++++++.|+.|++||+.+++........  ......+........+..+++++.|+.|++||+++++++.
T Consensus       249 ~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~  328 (408)
T 4a11_B          249 NGLCFTSDGLHLLTVGTDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQIT  328 (408)
T ss_dssp             EEEEECTTSSEEEEEETTSCEEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTTCCEEE
T ss_pred             eEEEEcCCCCEEEEecCCCeEEEEECCCCccceeccccccccccccceeEEecCCCceEEEEecCCEEEEEECcCCccee
Confidence            99999999999999999999999999887654332211  0111122222223445567788889999999999999999


Q ss_pred             EEe-cCCceeEEEeccCCCEEEEcccccCceeEeeccCC
Q 021399          228 TYV-TERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRA  265 (313)
Q Consensus       228 ~~~-~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~  265 (313)
                      .+. +...+.+++|+|++..+++++. | +.+.+|+...
T Consensus       329 ~~~~~~~~v~~~~~s~~~~~l~s~~~-d-g~i~iw~~~~  365 (408)
T 4a11_B          329 MLKGHYKTVDCCVFQSNFQELYSGSR-D-CNILAWVPSL  365 (408)
T ss_dssp             EECCCSSCEEEEEEETTTTEEEEEET-T-SCEEEEEECC
T ss_pred             eeccCCCeEEEEEEcCCCCEEEEECC-C-CeEEEEeCCC
Confidence            886 5678999999999988776543 3 3344555443

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=99.95  E-value=5.9e-25  Score=193.51  Aligned_cols=227  Identities=12%  Similarity=0.063  Sum_probs=174.7

Q ss_pred             cccccccccceeEEEEccCCCEEEEeeCCC---CeEEEeCCCCcEEEEecCCCCceEEEEECCCCCeEE-EeeCCCc--E
Q 021399            3 PILMKGHERPLTYLKYNKDGDLLFSCAKDH---TPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLI-TGSADQT--A   76 (313)
Q Consensus         3 ~~~l~~h~~~v~~~~fs~~g~~l~s~s~d~---~i~iw~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~-s~s~D~~--v   76 (313)
                      ++.+.+|...+.+++|+|||++|++++.|+   .|++||+++++.. .+..|.+.+.+++|+|||+.|+ +++.|+.  |
T Consensus       171 ~~~l~~~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~~~-~l~~~~~~~~~~~~spdg~~la~~~~~~g~~~i  249 (415)
T 2hqs_A          171 QFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVR-QVASFPRHNGAPAFSPDGSKLAFALSKTGSLNL  249 (415)
T ss_dssp             CEEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEE-EEECCSSCEEEEEECTTSSEEEEEECTTSSCEE
T ss_pred             CEEEeCCCCcceeeEEcCCCCEEEEEEecCCCcEEEEEECCCCcEE-EeecCCCcccCEEEcCCCCEEEEEEecCCCceE
Confidence            567788999999999999999999999885   9999999998775 5778889999999999999776 7776665  8


Q ss_pred             EEEECCCCeEEEEecCCCCeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEcc
Q 021399           77 KLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGP  156 (313)
Q Consensus        77 ~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~  156 (313)
                      ++||+.+++...                                                     +..|...+..+.|+|
T Consensus       250 ~~~d~~~~~~~~-----------------------------------------------------l~~~~~~~~~~~~sp  276 (415)
T 2hqs_A          250 YVMDLASGQIRQ-----------------------------------------------------VTDGRSNNTEPTWFP  276 (415)
T ss_dssp             EEEETTTCCEEE-----------------------------------------------------CCCCSSCEEEEEECT
T ss_pred             EEEECCCCCEEe-----------------------------------------------------CcCCCCcccceEECC
Confidence            899987764321                                                     122345677889999


Q ss_pred             CCCEEEEeeC-CC--eEEEEECCCCceeeecccccCceeceEEEEECCCCCEEEEeeCC---CcEEEEECCCCcEEEEEe
Q 021399          157 LNRTIISAGE-DA--IVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLD---KSAKLWDARTLELIKTYV  230 (313)
Q Consensus       157 ~~~~i~t~~~-d~--~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d---g~i~iwd~~~~~~~~~~~  230 (313)
                      +++.|++++. ++  .|.+||+.+++.. .+.   .+...+.+++|+|+|++|++++.+   ..|++||+++++.. .+.
T Consensus       277 dg~~l~~~s~~~g~~~i~~~d~~~~~~~-~l~---~~~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~~~-~l~  351 (415)
T 2hqs_A          277 DSQNLAFTSDQAGRPQVYKVNINGGAPQ-RIT---WEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQ-VLS  351 (415)
T ss_dssp             TSSEEEEEECTTSSCEEEEEETTSSCCE-ECC---CSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCEE-ECC
T ss_pred             CCCEEEEEECCCCCcEEEEEECCCCCEE-EEe---cCCCcccCeEECCCCCEEEEEECcCCceEEEEEECCCCCEE-Eec
Confidence            9999988876 44  6888899877643 222   355678899999999999998875   58999999998874 444


Q ss_pred             cCCceeEEEeccCCCEEEEcccccCceeEeeccCCCceeeeeeehhhhhhhccccccccceeEEEECCCC
Q 021399          231 TERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDG  300 (313)
Q Consensus       231 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~fspdg  300 (313)
                      ....+..++|+|++..++.++.+++           ...+..||.. +.....+.+|.+.|.+++|+|.-
T Consensus       352 ~~~~~~~~~~spdg~~l~~~s~~~~-----------~~~l~~~d~~-g~~~~~l~~~~~~v~~~~~~~~~  409 (415)
T 2hqs_A          352 STFLDETPSLAPNGTMVIYSSSQGM-----------GSVLNLVSTD-GRFKARLPATDGQVKFPAWSPYL  409 (415)
T ss_dssp             CSSSCEEEEECTTSSEEEEEEEETT-----------EEEEEEEETT-SCCEEECCCSSSEEEEEEECCCC
T ss_pred             CCCCcCCeEEcCCCCEEEEEEcCCC-----------ccEEEEEECC-CCcEEEeeCCCCCCcCCcccccc
Confidence            3447889999999998877654332           1234455543 33445677899999999999974

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=99.94  E-value=5.6e-25  Score=189.75  Aligned_cols=229  Identities=13%  Similarity=0.142  Sum_probs=160.9

Q ss_pred             cceeEEEEccCCCEE-EEeeCCCCeEEEeCCCCcEEEEecCCCCceEEEEECCCCCeEEEeeCCCcEEEEECCCC-eEEE
Q 021399           11 RPLTYLKYNKDGDLL-FSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETG-AQLF   88 (313)
Q Consensus        11 ~~v~~~~fs~~g~~l-~s~s~d~~i~iw~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~v~vWd~~~~-~~~~   88 (313)
                      ..+..+.+.++++.+ ++++.|+.|+|||..+++.+.++. |...|.+++++++.  ++. ..|+.|++||+.++ +.+.
T Consensus        59 ~~~~~~~~~~~~~~~~~~~~~d~~v~iWd~~~~~~~~~~~-~~~~v~~v~~~~~~--~~~-~~~~~i~i~d~~~~~~~~~  134 (355)
T 3vu4_A           59 RHLSKVRMLHRTNYVAFVTGVKEVVHIWDDVKKQDVSRIK-VDAPVKDLFLSREF--IVV-SYGDVISVFKFGNPWKRIT  134 (355)
T ss_dssp             SCCCEEEECTTSSEEEEECSSTTEEEEEETTTTEEEEEEE-CSSCEEEEEECSSE--EEE-EETTEEEEEESSTTCCBSS
T ss_pred             CCeEEEEEcCCCCEEEEEECCccEEEEEECCCCcEEEEEE-CCCceEEEEEcCCE--EEE-EEcCEEEEEECCCCceeeE
Confidence            357888999998887 567888999999999999998887 67799999999863  333 34889999999887 4332


Q ss_pred             EecCCCCeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCC---------CCCCce-EEEecCCCCceEEEEEccCC
Q 021399           89 TFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPA---------DQGGES-VLILKGPQGRINRAVWGPLN  158 (313)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~-~~~~~~~~~~i~~~~~~~~~  158 (313)
                      .+..  +...+.+.+ ..+++.+..    ..+.+.++++.....         .....+ +..+.+|.+.|.+++|+|++
T Consensus       135 ~~~~--~~~~~~~s~-~~la~~sg~----~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g  207 (355)
T 3vu4_A          135 DDIR--FGGVCEFSN-GLLVYSNEF----NLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKS  207 (355)
T ss_dssp             CCEE--EEEEEEEET-TEEEEEESS----CTTCEEEEECCC------------------CCEEECCCSSCEEEEEECTTS
T ss_pred             Eecc--CCceEEEEc-cEEEEeCCC----cCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCC
Confidence            2222  233334444 333332111    122334444332110         000012 56788999999999999999


Q ss_pred             CEEEEeeCCCe-EEEEECCCCceeeecccccC-ceeceEEEEECCCCCEEEEeeCCCcEEEEECCCCcEEE--E------
Q 021399          159 RTIISAGEDAI-VRIWDTETGKLLKESDKETG-HKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIK--T------  228 (313)
Q Consensus       159 ~~i~t~~~d~~-i~lwd~~~~~~~~~~~~~~~-h~~~v~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~--~------  228 (313)
                      +++++|+.|++ |++||+++++++..+.  .+ |...|.+++|+|++++|++++.|++|++||++......  .      
T Consensus       208 ~~l~s~s~d~~~v~iwd~~~~~~~~~~~--~g~h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~~~~~~~~~~~~~~  285 (355)
T 3vu4_A          208 DMVATCSQDGTIIRVFKTEDGVLVREFR--RGLDRADVVDMKWSTDGSKLAVVSDKWTLHVFEIFNDQDNKRHALKGWIN  285 (355)
T ss_dssp             SEEEEEETTCSEEEEEETTTCCEEEEEE--CTTCCSCEEEEEECTTSCEEEEEETTCEEEEEESSCCSCCCSEETTTTEE
T ss_pred             CEEEEEeCCCCEEEEEECCCCcEEEEEE--cCCCCCcEEEEEECCCCCEEEEEECCCEEEEEEccCCCCcccccccceee
Confidence            99999999998 9999999998877653  13 88999999999999999999999999999997653111  0      


Q ss_pred             --------------Eec--CCceeEEEeccCCCEEEEccc
Q 021399          229 --------------YVT--ERPVNAVTMSPLLDHVVLGGG  252 (313)
Q Consensus       229 --------------~~~--~~~~~~~~~~p~~~~~~~~~~  252 (313)
                                    +..  ..+...++|+|++..+++++.
T Consensus       286 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~d~~~l~~~~~  325 (355)
T 3vu4_A          286 MKYFQSEWSLCNFKLSVDKHVRGCKIAWISESSLVVVWPH  325 (355)
T ss_dssp             CCCCCCSSCSEEEECCCCTTCCCCEEEESSSSEEEEEETT
T ss_pred             ccccccccceeEEEeccCCCCCceEEEEeCCCCEEEEEeC
Confidence                          000  112366889998887777654

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=99.93  E-value=1.5e-24  Score=190.86  Aligned_cols=233  Identities=10%  Similarity=-0.029  Sum_probs=172.0

Q ss_pred             cccccccceeEEEEcc--------------CCCEEEEeeCC------CCeEEEeCCCCcEEEEecCCCCceEEEEECCCC
Q 021399            5 LMKGHERPLTYLKYNK--------------DGDLLFSCAKD------HTPTVWFADNGERLGTYRGHNGAVWCCDVSRDS   64 (313)
Q Consensus         5 ~l~~h~~~v~~~~fs~--------------~g~~l~s~s~d------~~i~iw~~~~~~~~~~~~~H~~~V~~~~~~~~~   64 (313)
                      .+.+|...+..+++++              .+..++.++.+      +.|++||.+. .....+.+|...|.+++|+|+|
T Consensus       112 ~~~~~~~~~~~~~~~~~d~~~~~~~g~~~~~~~~l~~~s~~~~~~~~~~i~i~d~~g-~~~~~l~~~~~~v~~~~~Spdg  190 (415)
T 2hqs_A          112 SYKVNKQWLRYAGHTASDEVFEKLTGIKGAFRTRIAYVVQTNGGQFPYELRVSDYDG-YNQFVVHRSPQPLMSPAWSPDG  190 (415)
T ss_dssp             EEEECGGGHHHHHHHHHHHHHHHHHSSCCCTTCEEEEEEECSSSSCCEEEEEEETTS-CSCEEEEEESSCEEEEEECTTS
T ss_pred             EEEcChhHHHHHHHHHHHHHHHHHcCCCCcCCCEEEEEEecCCCCccceEEEEcCCC-CCCEEEeCCCCcceeeEEcCCC
Confidence            4677777777777664              26677777664      7999999874 4567888899999999999999


Q ss_pred             CeEEEeeCCC---cEEEEECCCCeEEEEecCCCCeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEE
Q 021399           65 MTLITGSADQ---TAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLI  141 (313)
Q Consensus        65 ~~l~s~s~D~---~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  141 (313)
                      +.+++++.|+   .|++||+.+++....                                                    
T Consensus       191 ~~la~~s~~~~~~~i~~~d~~tg~~~~l----------------------------------------------------  218 (415)
T 2hqs_A          191 SKLAYVTFESGRSALVIQTLANGAVRQV----------------------------------------------------  218 (415)
T ss_dssp             SEEEEEECTTSSCEEEEEETTTCCEEEE----------------------------------------------------
T ss_pred             CEEEEEEecCCCcEEEEEECCCCcEEEe----------------------------------------------------
Confidence            9999999885   999999987654311                                                    


Q ss_pred             ecCCCCceEEEEEccCCCEEE-EeeCCC--eEEEEECCCCceeeecccccCceeceEEEEECCCCCEEEEeeC-CC--cE
Q 021399          142 LKGPQGRINRAVWGPLNRTII-SAGEDA--IVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSL-DK--SA  215 (313)
Q Consensus       142 ~~~~~~~i~~~~~~~~~~~i~-t~~~d~--~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~-dg--~i  215 (313)
                       ..+.+.+..+.|+|+++.++ +++.++  .|++||+.+++.. .+   ..|...+.+++|+|||++|+.++. ++  .|
T Consensus       219 -~~~~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~~~-~l---~~~~~~~~~~~~spdg~~l~~~s~~~g~~~i  293 (415)
T 2hqs_A          219 -ASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIR-QV---TDGRSNNTEPTWFPDSQNLAFTSDQAGRPQV  293 (415)
T ss_dssp             -ECCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEE-EC---CCCSSCEEEEEECTTSSEEEEEECTTSSCEE
T ss_pred             -ecCCCcccCEEEcCCCCEEEEEEecCCCceEEEEECCCCCEE-eC---cCCCCcccceEECCCCCEEEEEECCCCCcEE
Confidence             12334577889999999887 665555  4999999887653 33   246778999999999999998886 44  67


Q ss_pred             EEEECCCCcEEEEEecCCceeEEEeccCCCEEEEcccccCceeEeeccCCCceeeeeeehhhhhhhccccccccceeEEE
Q 021399          216 KLWDARTLELIKTYVTERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALA  295 (313)
Q Consensus       216 ~iwd~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~  295 (313)
                      .+||+++++..........+..++|+|+++.+++++..++           ...+.+||..+++. ..+..|. .+.+++
T Consensus       294 ~~~d~~~~~~~~l~~~~~~~~~~~~spdG~~l~~~~~~~g-----------~~~i~~~d~~~~~~-~~l~~~~-~~~~~~  360 (415)
T 2hqs_A          294 YKVNINGGAPQRITWEGSQNQDADVSSDGKFMVMVSSNGG-----------QQHIAKQDLATGGV-QVLSSTF-LDETPS  360 (415)
T ss_dssp             EEEETTSSCCEECCCSSSEEEEEEECTTSSEEEEEEECSS-----------CEEEEEEETTTCCE-EECCCSS-SCEEEE
T ss_pred             EEEECCCCCEEEEecCCCcccCeEECCCCCEEEEEECcCC-----------ceEEEEEECCCCCE-EEecCCC-CcCCeE
Confidence            7889998875433334556888999999998887654322           22445566554433 2344454 899999


Q ss_pred             ECCCCCeeEEEEE
Q 021399          296 FNPDGKRYGFLLL  308 (313)
Q Consensus       296 fspdgk~~~~~~~  308 (313)
                      |+|||+.++|...
T Consensus       361 ~spdg~~l~~~s~  373 (415)
T 2hqs_A          361 LAPNGTMVIYSSS  373 (415)
T ss_dssp             ECTTSSEEEEEEE
T ss_pred             EcCCCCEEEEEEc
Confidence            9999999887653

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=99.93  E-value=7.1e-22  Score=179.32  Aligned_cols=280  Identities=11%  Similarity=0.092  Sum_probs=191.1

Q ss_pred             eeEEEEccCCCEEEEeeCCCCeEEEeC--CCCcEEEEecCCCCceEEEEECC----CCCeEEEee-CCCcEEEEECCCCe
Q 021399           13 LTYLKYNKDGDLLFSCAKDHTPTVWFA--DNGERLGTYRGHNGAVWCCDVSR----DSMTLITGS-ADQTAKLWNVETGA   85 (313)
Q Consensus        13 v~~~~fs~~g~~l~s~s~d~~i~iw~~--~~~~~~~~~~~H~~~V~~~~~~~----~~~~l~s~s-~D~~v~vWd~~~~~   85 (313)
                      +.+++|+|||++|++++.|+.|++||+  .+++.+.++.. ...+..++|+|    +|+++++++ .+++|.+||..+++
T Consensus       181 ~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~~~~~i~~-g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~  259 (543)
T 1nir_A          181 VHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKI-GIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLE  259 (543)
T ss_dssp             EEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEEC-CSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCC
T ss_pred             cceEEECCCCCEEEEECCCCeEEEEECcCCCCcEEEEEec-CCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccccc
Confidence            889999999999999999999999999  88988888884 45679999999    999998887 58999999999998


Q ss_pred             EEEEecCC------------CCeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEE
Q 021399           86 QLFTFNFD------------SPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAV  153 (313)
Q Consensus        86 ~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~  153 (313)
                      ++..+...            ..+..+.+++++...++....    ...+.+++...    .....+..+. +...+..+.
T Consensus       260 ~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~----~g~i~vvd~~~----~~~l~~~~i~-~~~~~~~~~  330 (543)
T 1nir_A          260 PKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKE----TGKVLLVNYKD----IDNLTVTSIG-AAPFLHDGG  330 (543)
T ss_dssp             EEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETT----TTEEEEEECTT----SSSCEEEEEE-CCSSCCCEE
T ss_pred             cceeecccCcccCccccccCCceEEEEECCCCCEEEEEECC----CCeEEEEEecC----CCcceeEEec-cCcCccCce
Confidence            87766431            134566677644333332211    11111121111    0011111222 344567889


Q ss_pred             EccCCCEEEEe-eCCCeEEEEECCCCceeeeccc-ccCceeceEEEEECCC-CCEEEEee-CCCcEEEEECCC-------
Q 021399          154 WGPLNRTIISA-GEDAIVRIWDTETGKLLKESDK-ETGHKKTITSLAKAAD-GSHFLTGS-LDKSAKLWDART-------  222 (313)
Q Consensus       154 ~~~~~~~i~t~-~~d~~i~lwd~~~~~~~~~~~~-~~~h~~~v~~~~~s~~-~~~l~s~s-~dg~i~iwd~~~-------  222 (313)
                      |+|++++++++ ..+++|.+||..+++++..+.. ...|......+ ++|+ +..++++. .|++|++||+++       
T Consensus       331 ~spdg~~l~va~~~~~~v~v~D~~tg~l~~~i~~g~~ph~g~g~~~-~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~~~  409 (543)
T 1nir_A          331 WDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANF-VHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYA  409 (543)
T ss_dssp             ECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTB
T ss_pred             ECCCCCEEEEEecCCCeEEEEECCCCeEEEeeccCCCCCCCCCccc-CCCCCccEEEeccCCCceEEEEEeCCCCCchhc
Confidence            99999987655 4688999999999988766542 12254434343 4676 66677765 589999999998       


Q ss_pred             CcEEEEEecC-CceeEEEeccCCCEEEEcc--ccc---CceeEeeccCCCceeeeeeehhhhhhhccccccccceeEEEE
Q 021399          223 LELIKTYVTE-RPVNAVTMSPLLDHVVLGG--GQD---ASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAF  296 (313)
Q Consensus       223 ~~~~~~~~~~-~~~~~~~~~p~~~~~~~~~--~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~f  296 (313)
                      +++++++... .....++++|++..++++.  +.+   ...+.++|...++.....++...   ...+..|..+|..++|
T Consensus       410 ~~~v~~l~~~g~~~~~v~~~pdg~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~~~~~~v~~---~~~~~~~~~~~~~~~~  486 (543)
T 1nir_A          410 WKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAE---WADLGEGAKRVVQPEY  486 (543)
T ss_dssp             TSEEEEEECSCSCCCCEECCTTCCEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHH---HHCCCSSCCEEEEEEE
T ss_pred             CeEEEEEEcCCCCceEEEcCCCCCcEEEecCCCCCcccCceEEEEECCCCCCCeEEeechh---hcccCCCCCceEeccC
Confidence            8999998754 4568899999999999875  222   33455556544432212222110   0123456789999999


Q ss_pred             CCCCCeeEEE
Q 021399          297 NPDGKRYGFL  306 (313)
Q Consensus       297 spdgk~~~~~  306 (313)
                      +|||+++.+-
T Consensus       487 ~~~g~~~~~s  496 (543)
T 1nir_A          487 NKRGDEVWFS  496 (543)
T ss_dssp             CSSSSEEEEE
T ss_pred             CCCCCEEEEE
Confidence            9999997754

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=99.92  E-value=4.3e-23  Score=187.32  Aligned_cols=264  Identities=11%  Similarity=0.069  Sum_probs=188.3

Q ss_pred             EEccCCCEEEEeeCCCCeEEEeCCCCcEEEEecCCCCceEEEEECCCCCeEEEeeCCCcEEEEEC--CCCeEEEEecCCC
Q 021399           17 KYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNV--ETGAQLFTFNFDS   94 (313)
Q Consensus        17 ~fs~~g~~l~s~s~d~~i~iw~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~v~vWd~--~~~~~~~~~~~~~   94 (313)
                      .|+|++..+++++.|++|.+||..+++++.++..+.. +.+++|+|+|+++++++.|++|++||+  .+++.+..+....
T Consensus       144 ~~~p~~~~~vs~~~d~~V~v~D~~t~~~~~~i~~g~~-~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~~~~~i~~g~  222 (543)
T 1nir_A          144 DLDLPNLFSVTLRDAGQIALVDGDSKKIVKVIDTGYA-VHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIGI  222 (543)
T ss_dssp             CCCGGGEEEEEEGGGTEEEEEETTTCCEEEEEECSTT-EEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEECCS
T ss_pred             ccCCCCEEEEEEcCCCeEEEEECCCceEEEEEecCcc-cceEEECCCCCEEEEECCCCeEEEEECcCCCCcEEEEEecCC
Confidence            3899999999999999999999999999999984333 899999999999999999999999999  7888877777666


Q ss_pred             CeeEEEeec----CCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecC----------C-CCceEEEEEccCCC
Q 021399           95 PARSVDFAV----GDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKG----------P-QGRINRAVWGPLNR  159 (313)
Q Consensus        95 ~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~-~~~i~~~~~~~~~~  159 (313)
                      ....+.|+|    +++.+++...    ....+.+++.      ...+.+..+..          | ...+..+.++|+++
T Consensus       223 ~p~~va~sp~~~~dg~~l~v~~~----~~~~v~v~D~------~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~  292 (543)
T 1nir_A          223 EARSVESSKFKGYEDRYTIAGAY----WPPQFAIMDG------ETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHP  292 (543)
T ss_dssp             EEEEEEECCSTTCTTTEEEEEEE----ESSEEEEEET------TTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSS
T ss_pred             CcceEEeCCCcCCCCCEEEEEEc----cCCeEEEEec------cccccceeecccCcccCccccccCCceEEEEECCCCC
Confidence            778889998    7766555431    0111112211      11223333322          2 23678899999765


Q ss_pred             -EEEEeeCCCeEEEEECCCCceeeecccccCceeceEEEEECCCCCEEEEee-CCCcEEEEECCCCcEEEEEecC---Cc
Q 021399          160 -TIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGS-LDKSAKLWDARTLELIKTYVTE---RP  234 (313)
Q Consensus       160 -~i~t~~~d~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s-~dg~i~iwd~~~~~~~~~~~~~---~~  234 (313)
                       .+++...++.|.+||..+.+.+....  ..+...+..++|+|+|+++++++ .+++|.+||+++++++..+...   .+
T Consensus       293 ~~~vs~~~~g~i~vvd~~~~~~l~~~~--i~~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg~l~~~i~~g~~ph~  370 (543)
T 1nir_A          293 EFIVNVKETGKVLLVNYKDIDNLTVTS--IGAAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHP  370 (543)
T ss_dssp             EEEEEETTTTEEEEEECTTSSSCEEEE--EECCSSCCCEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSBCC
T ss_pred             EEEEEECCCCeEEEEEecCCCcceeEE--eccCcCccCceECCCCCEEEEEecCCCeEEEEECCCCeEEEeeccCCCCCC
Confidence             45677789999999998765443111  12445678899999999876554 5899999999999998887632   21


Q ss_pred             eeEEE-eccCCCEEEEcccccCceeEeeccCCCceeeeeeehhh-------hhhhccccccccceeEEEECCCCCeeEE
Q 021399          235 VNAVT-MSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKIL-------QEEIGGVKGHFGPINALAFNPDGKRYGF  305 (313)
Q Consensus       235 ~~~~~-~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~h~~~V~~~~fspdgk~~~~  305 (313)
                      -..+. ++|++..+++++..+...            +++||..+       .+.++.+.+|.+.+..++|||||+.+..
T Consensus       371 g~g~~~~~p~~g~~~~s~~~~d~~------------V~v~d~~~~~~~~~~~~~v~~l~~~g~~~~~v~~~pdg~~l~v  437 (543)
T 1nir_A          371 GRGANFVHPKYGPVWSTSHLGDGS------------ISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYV  437 (543)
T ss_dssp             TTCEEEEETTTEEEEEEEBSSSSE------------EEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCCEEEE
T ss_pred             CCCcccCCCCCccEEEeccCCCce------------EEEEEeCCCCCchhcCeEEEEEEcCCCCceEEEcCCCCCcEEE
Confidence            12222 467766666654322222            34455444       5666778889899999999999999764

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=99.92  E-value=2.4e-22  Score=172.36  Aligned_cols=270  Identities=11%  Similarity=0.088  Sum_probs=191.2

Q ss_pred             ccceeEEEEccCCCEEEEeeC-------CCCeEEEeCCCCcEEEEecCCCCceEEEEECCCCC-eEEEeeCCCcEEEEEC
Q 021399           10 ERPLTYLKYNKDGDLLFSCAK-------DHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSM-TLITGSADQTAKLWNV   81 (313)
Q Consensus        10 ~~~v~~~~fs~~g~~l~s~s~-------d~~i~iw~~~~~~~~~~~~~H~~~V~~~~~~~~~~-~l~s~s~D~~v~vWd~   81 (313)
                      ...+..++|+|+|++|+.++.       ++.|.+||.++++.+..+... ..+..++|+|+++ ++++...++.|.+||+
T Consensus        40 ~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~  118 (353)
T 3vgz_A           40 GKGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIHND-LKPFGATINNTTQTLWFGNTVNSAVTAIDA  118 (353)
T ss_dssp             ESSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEEES-SCCCSEEEETTTTEEEEEETTTTEEEEEET
T ss_pred             ccCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEecC-CCcceEEECCCCCEEEEEecCCCEEEEEeC
Confidence            446788999999999988874       467999999999988887653 3467889999998 4556666899999999


Q ss_pred             CCCeEEEEecCCC----------CeeEEEeecCCeEEEEEC-CCceeccccceeeeeeeCCCCCCCceEEEecCCCCceE
Q 021399           82 ETGAQLFTFNFDS----------PARSVDFAVGDKLAVITT-DPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRIN  150 (313)
Q Consensus        82 ~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  150 (313)
                      .+++.+..+....          ....+.+++++..+++.. ..    ...+..++.      ..++.+..+..+...+.
T Consensus       119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~----~~~i~~~d~------~~~~~~~~~~~~~~~~~  188 (353)
T 3vgz_A          119 KTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGK----ESVIWVVDG------GNIKLKTAIQNTGKMST  188 (353)
T ss_dssp             TTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESS----SCEEEEEET------TTTEEEEEECCCCTTCC
T ss_pred             CCCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCC----CceEEEEcC------CCCceEEEecCCCCccc
Confidence            9998877665432          146678888765444332 11    111111111      12334444443444577


Q ss_pred             EEEEccCCCEEEEeeCCCeEEEEECCCCceeeeccc-ccCceeceEEEEECCCCCEEEEeeC-CCcEEEEECCCCcEEEE
Q 021399          151 RAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDK-ETGHKKTITSLAKAADGSHFLTGSL-DKSAKLWDARTLELIKT  228 (313)
Q Consensus       151 ~~~~~~~~~~i~t~~~d~~i~lwd~~~~~~~~~~~~-~~~h~~~v~~~~~s~~~~~l~s~s~-dg~i~iwd~~~~~~~~~  228 (313)
                      .+.|+|+++++++++.++.|.+||..+++....+.. ..++...+..++++|++++++.++. ++.|.+||+++++.+..
T Consensus       189 ~~~~s~dg~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~  268 (353)
T 3vgz_A          189 GLALDSEGKRLYTTNADGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRNGNILAK  268 (353)
T ss_dssp             CCEEETTTTEEEEECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTTCCEEEE
T ss_pred             eEEECCCCCEEEEEcCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEE
Confidence            889999999999999999999999999887665432 2235567888999999998777665 58999999999999888


Q ss_pred             EecCCceeEEEeccCCCEEEEcccccCceeEeeccCCCceeeeeeehhhhhhhccccccccceeEEEECCCCCeeEE
Q 021399          229 YVTERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKRYGF  305 (313)
Q Consensus       229 ~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~fspdgk~~~~  305 (313)
                      +....+ ..++|+|+++.++++...+ ..+..            ||..+++.+..+.. ...+.+++|+|||+.+.+
T Consensus       269 ~~~~~~-~~~~~s~dg~~l~v~~~~~-~~v~~------------~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~v  330 (353)
T 3vgz_A          269 VAAPES-LAVLFNPARNEAYVTHRQA-GKVSV------------IDAKSYKVVKTFDT-PTHPNSLALSADGKTLYV  330 (353)
T ss_dssp             EECSSC-CCEEEETTTTEEEEEETTT-TEEEE------------EETTTTEEEEEEEC-CSEEEEEEECTTSCEEEE
T ss_pred             EEcCCC-ceEEECCCCCEEEEEECCC-CeEEE------------EECCCCeEEEEEec-CCCCCeEEEcCCCCEEEE
Confidence            765543 6799999999887765433 33444            44444433333332 346799999999997544

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=99.92  E-value=1.4e-23  Score=175.09  Aligned_cols=244  Identities=13%  Similarity=0.109  Sum_probs=171.9

Q ss_pred             cccccccccceeEEEEccCCCEEEEeeCCCCeEEEeCCC-CcEEEEecCCC-CceEEEEECCCCCeEEEee--CCCcEEE
Q 021399            3 PILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADN-GERLGTYRGHN-GAVWCCDVSRDSMTLITGS--ADQTAKL   78 (313)
Q Consensus         3 ~~~l~~h~~~v~~~~fs~~g~~l~s~s~d~~i~iw~~~~-~~~~~~~~~H~-~~V~~~~~~~~~~~l~s~s--~D~~v~v   78 (313)
                      ++.+..|...|.+++|+|+|++|++++ ++.|++||+++ ++....+.+|. ..|.+++|+|+++.+++++  .++..+|
T Consensus        34 ~~~~~~~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~l  112 (297)
T 2ojh_A           34 MRVVWQTPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSPEKVDTGFATICNNDHGISPDGALYAISDKVEFGKSAI  112 (297)
T ss_dssp             EEEEEEESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSCEECCCTTCCCBCSCCEECTTSSEEEEEECTTTSSCEE
T ss_pred             eeeeccCCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCceEeccccccccccceEECCCCCEEEEEEeCCCCcceE
Confidence            345677889999999999999999987 78999999999 87776666664 6789999999999999988  4466777


Q ss_pred             EECC--CCeEEEEecCCCCeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEcc
Q 021399           79 WNVE--TGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGP  156 (313)
Q Consensus        79 Wd~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~  156 (313)
                      |.++  +++..                                                     .+. +...+..+.|+|
T Consensus       113 ~~~~~~~~~~~-----------------------------------------------------~~~-~~~~~~~~~~sp  138 (297)
T 2ojh_A          113 YLLPSTGGTPR-----------------------------------------------------LMT-KNLPSYWHGWSP  138 (297)
T ss_dssp             EEEETTCCCCE-----------------------------------------------------ECC-SSSSEEEEEECT
T ss_pred             EEEECCCCceE-----------------------------------------------------Eee-cCCCccceEECC
Confidence            7643  22110                                                     001 112366778999


Q ss_pred             CCCEEE-EeeCCCeEEEEEC--CCCceeeecccccCceeceEEEEECCCCCEEEEee-CCCcEEEEECC-CCcEEEEEe-
Q 021399          157 LNRTII-SAGEDAIVRIWDT--ETGKLLKESDKETGHKKTITSLAKAADGSHFLTGS-LDKSAKLWDAR-TLELIKTYV-  230 (313)
Q Consensus       157 ~~~~i~-t~~~d~~i~lwd~--~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s-~dg~i~iwd~~-~~~~~~~~~-  230 (313)
                      +++.++ +++.++.++||++  ..+.. ..+   ..+...+.+++|+|+++.|+.++ .|+.+++|+++ .+..+..+. 
T Consensus       139 dg~~l~~~~~~~~~~~l~~~~~~~~~~-~~~---~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~  214 (297)
T 2ojh_A          139 DGKSFTYCGIRDQVFDIYSMDIDSGVE-TRL---THGEGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDGSSVERITD  214 (297)
T ss_dssp             TSSEEEEEEEETTEEEEEEEETTTCCE-EEC---CCSSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCEEECCC
T ss_pred             CCCEEEEEECCCCceEEEEEECCCCcc-eEc---ccCCCccccceECCCCCEEEEEecCCCCccEEEECCCCCCcEEEec
Confidence            999877 7788999999985  33332 222   24667899999999999888766 58999999876 444555554 


Q ss_pred             cCCceeEEEeccCCCEEEEcccccCceeEeeccCCCceeeeeeehhhhhh--hccccccccceeEEEECCCCCeeEEEEE
Q 021399          231 TERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEE--IGGVKGHFGPINALAFNPDGKRYGFLLL  308 (313)
Q Consensus       231 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~h~~~V~~~~fspdgk~~~~~~~  308 (313)
                      +...+..++|+|++..+++++..+....   ....+...+.+||..+++.  +..+.+|...|..++|+|||+.+++...
T Consensus       215 ~~~~~~~~~~s~dg~~l~~~~~~~~~~~---~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~  291 (297)
T 2ojh_A          215 SAYGDWFPHPSPSGDKVVFVSYDADVFD---HPRDLDVRVQLMDMDGGNVETLFDLFGGQGTMNSPNWSPDGDEFAYVRY  291 (297)
T ss_dssp             CSEEEEEEEECTTSSEEEEEEEETTCCS---CCSSEEEEEEEEETTSCSCEEEEEEEESTTTSCSCCBCTTSSEEEEEEE
T ss_pred             CCcccCCeEECCCCCEEEEEEcCCCCCc---ccccCceEEEEEecCCCCceeeeccCCCCcccccceECCCCCEEEEEEe
Confidence            3446788999999998887654422100   0000112345555544332  2334478889999999999999988653

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=99.92  E-value=2.2e-23  Score=196.41  Aligned_cols=269  Identities=11%  Similarity=-0.002  Sum_probs=187.7

Q ss_pred             ccceeEEEEccCCCEEEEeeC-CC-----CeEEEeCCCCcEEEEecCCCC------------------------ceEEEE
Q 021399           10 ERPLTYLKYNKDGDLLFSCAK-DH-----TPTVWFADNGERLGTYRGHNG------------------------AVWCCD   59 (313)
Q Consensus        10 ~~~v~~~~fs~~g~~l~s~s~-d~-----~i~iw~~~~~~~~~~~~~H~~------------------------~V~~~~   59 (313)
                      ...+.+++|||||++|++++. |+     .|++||+++++....+..|..                        .|.+++
T Consensus        36 ~~~~~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  115 (741)
T 2ecf_A           36 GPTLMKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDYQ  115 (741)
T ss_dssp             CCCCEEEEECTTSSEEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC--------------------CCEESCCCE
T ss_pred             CCCCCCceEecCCCEEEEEeccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCcceeE
Confidence            346889999999999999998 88     899999999987776665433                        388999


Q ss_pred             ECCCCCeEEEeeCCCcEEEEECCCC---eEEEEecCCCCeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCC
Q 021399           60 VSRDSMTLITGSADQTAKLWNVETG---AQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGG  136 (313)
Q Consensus        60 ~~~~~~~l~s~s~D~~v~vWd~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  136 (313)
                      |+|||+.+++++. +.|++||+.++   +..........+..+.|+|+++.++...+.      .+.++++.      ++
T Consensus       116 ~SpDg~~l~~~~~-~~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~SPDG~~la~~~~~------~i~~~d~~------~g  182 (741)
T 2ecf_A          116 WSPDAQRLLFPLG-GELYLYDLKQEGKAAVRQLTHGEGFATDAKLSPKGGFVSFIRGR------NLWVIDLA------SG  182 (741)
T ss_dssp             ECTTSSEEEEEET-TEEEEEESSSCSTTSCCBCCCSSSCEEEEEECTTSSEEEEEETT------EEEEEETT------TT
T ss_pred             ECCCCCEEEEEeC-CcEEEEECCCCCcceEEEcccCCcccccccCCCCCCEEEEEeCC------cEEEEecC------CC
Confidence            9999999998886 99999999887   544333344567888999988766554432      12222211      11


Q ss_pred             ceEEEecCCCC----------------ceEEEEEccCCCEEEEeeCCC--------------------------------
Q 021399          137 ESVLILKGPQG----------------RINRAVWGPLNRTIISAGEDA--------------------------------  168 (313)
Q Consensus       137 ~~~~~~~~~~~----------------~i~~~~~~~~~~~i~t~~~d~--------------------------------  168 (313)
                      ........+..                .+..+.|+|+|++|++++.|+                                
T Consensus       183 ~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~  262 (741)
T 2ecf_A          183 RQMQLTADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQ  262 (741)
T ss_dssp             EEEECCCCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCE
T ss_pred             CEEEeccCCccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCe
Confidence            12211122222                146789999999999987765                                


Q ss_pred             -eEEEEECCC-CceeeecccccCceeceEEEEECCCCCEEEEeeC-----CCcEEEEECCCCcEEEEEecCC-----cee
Q 021399          169 -IVRIWDTET-GKLLKESDKETGHKKTITSLAKAADGSHFLTGSL-----DKSAKLWDARTLELIKTYVTER-----PVN  236 (313)
Q Consensus       169 -~i~lwd~~~-~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~-----dg~i~iwd~~~~~~~~~~~~~~-----~~~  236 (313)
                       .|++||+.+ ++.... .....|...+..++| |||++|+.++.     +..|++||++++++...+....     .+.
T Consensus       263 ~~l~~~d~~~~~~~~~~-~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~  340 (741)
T 2ecf_A          263 VKLGVISPAEQAQTQWI-DLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHETSPTWVPLHN  340 (741)
T ss_dssp             EEEEEECSSTTCCCEEE-CCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCEEEEEEEECSSCCCCCS
T ss_pred             eEEEEEECCCCCceEEe-cCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCceEEEEEcCCCCcCCcCC
Confidence             889999987 765432 221247788999999 99999997764     5689999999998776654322     346


Q ss_pred             EEEeccCCCEEEEcccccC-ceeEeeccCCCceeeeeeehhhhhhhccccccccceeEE-EECCCCCeeEEEEE
Q 021399          237 AVTMSPLLDHVVLGGGQDA-SAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINAL-AFNPDGKRYGFLLL  308 (313)
Q Consensus       237 ~~~~~p~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~-~fspdgk~~~~~~~  308 (313)
                      .++|+|++..++++ ..++ ..++.            ++.. +. ...+..|...|..+ +|||||+.++|...
T Consensus       341 ~~~~spdg~~~~~~-~~~g~~~l~~------------~~~~-~~-~~~l~~~~~~v~~~~~~s~dg~~l~~~~~  399 (741)
T 2ecf_A          341 SLRFLDDGSILWSS-ERTGFQHLYR------------IDSK-GK-AAALTHGNWSVDELLAVDEKAGLAYFRAG  399 (741)
T ss_dssp             CCEECTTSCEEEEE-CTTSSCEEEE------------ECSS-SC-EEESCCSSSCEEEEEEEETTTTEEEEEEC
T ss_pred             ceEECCCCeEEEEe-cCCCccEEEE------------EcCC-CC-eeeeeecceEEEeEeEEeCCCCEEEEEEe
Confidence            89999999844443 3332 22322            2221 12 34456677788887 59999999887653

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=99.91  E-value=3.3e-23  Score=194.65  Aligned_cols=277  Identities=12%  Similarity=0.038  Sum_probs=181.0

Q ss_pred             ceeEEEEccCCCEEEEeeCCCCeEEEeCCCCcEEEEecCCCC---ceEEEEECCCCCeEEEeeCC---------CcEEEE
Q 021399           12 PLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNG---AVWCCDVSRDSMTLITGSAD---------QTAKLW   79 (313)
Q Consensus        12 ~v~~~~fs~~g~~l~s~s~d~~i~iw~~~~~~~~~~~~~H~~---~V~~~~~~~~~~~l~s~s~D---------~~v~vW   79 (313)
                      .+.+++|+|||+++++ +.|+.|++||.++++....+.+|..   .|.+++|||||+.+++++.+         +.+.+|
T Consensus        18 ~~~~~~~spdg~~~~~-~~dg~i~~~d~~~g~~~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~   96 (723)
T 1xfd_A           18 HDPEAKWISDTEFIYR-EQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLS   96 (723)
T ss_dssp             CCCCCCBSSSSCBCCC-CSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEE
T ss_pred             cccccEEcCCCcEEEE-eCCCCEEEEECCCCcEEEEeccccccccccceEEECCCCCEEEEEecCccceeecceeeEEEE
Confidence            3678999999998776 7899999999999988888887775   49999999999999998875         678899


Q ss_pred             ECCCCeEEEEecCC---CCeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCC---------
Q 021399           80 NVETGAQLFTFNFD---SPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQG---------  147 (313)
Q Consensus        80 d~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------  147 (313)
                      |+.+++........   ..+..+.|+|+++.++...+.      .+.++++.      ++........+..         
T Consensus        97 d~~~~~~~~l~~~~~~~~~~~~~~~SPdG~~la~~~~~------~i~~~~~~------~g~~~~~~~~~~~~~~~~g~~~  164 (723)
T 1xfd_A           97 KIPHGDPQSLDPPEVSNAKLQYAGWGPKGQQLIFIFEN------NIYYCAHV------GKQAIRVVSTGKEGVIYNGLSD  164 (723)
T ss_dssp             ESSSCCCEECCCTTCCSCCCSBCCBCSSTTCEEEEETT------EEEEESSS------SSCCEEEECCCBTTTEEEEECC
T ss_pred             ECCCCceEeccCCccccccccccEECCCCCEEEEEECC------eEEEEECC------CCceEEEecCCCCCceECcccc
Confidence            99988753222211   125667889877655544331      11222111      1222222222222         


Q ss_pred             ---------ceEEEEEccCCCEEEEeeCCC----------------------------------eEEEEECCCCceeeec
Q 021399          148 ---------RINRAVWGPLNRTIISAGEDA----------------------------------IVRIWDTETGKLLKES  184 (313)
Q Consensus       148 ---------~i~~~~~~~~~~~i~t~~~d~----------------------------------~i~lwd~~~~~~~~~~  184 (313)
                               .+..+.|+|+|+.|++++.|+                                  .|++||+.+++....+
T Consensus       165 ~v~~ee~~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~~~~l  244 (723)
T 1xfd_A          165 WLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEM  244 (723)
T ss_dssp             HHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEEC
T ss_pred             eeEEEEeccCcceEEECCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCceeEEe
Confidence                     236899999999999987553                                  7999999887653333


Q ss_pred             ccc---cCceeceEEEEECCCCCEEEEeeC----CCcEEEEECCCCcEEEEEec--CCce----eEEEeccCCCEEEEcc
Q 021399          185 DKE---TGHKKTITSLAKAADGSHFLTGSL----DKSAKLWDARTLELIKTYVT--ERPV----NAVTMSPLLDHVVLGG  251 (313)
Q Consensus       185 ~~~---~~h~~~v~~~~~s~~~~~l~s~s~----dg~i~iwd~~~~~~~~~~~~--~~~~----~~~~~~p~~~~~~~~~  251 (313)
                      ...   ..+...+..++|+|||++|++.+.    +..|++||++++++...+..  ...+    ..++|+|+++.+++.+
T Consensus       245 ~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~  324 (723)
T 1xfd_A          245 MPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDESEAWLHRQNEEPVFSKDGRKFFFIR  324 (723)
T ss_dssp             CCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEECSSCCCCCCCCCEECTTSCSEEEEE
T ss_pred             eCCccCCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCcceEEEEeccCCEEeccCCCceEcCCCCeEEEEE
Confidence            211   123678899999999998877653    35799999999987665432  2223    3789999999887652


Q ss_pred             cccCceeEeeccCCCceeeeeee-hhhhh--hhcccccccccee-EEEECCCCCeeEEEE
Q 021399          252 GQDASAVTTTDHRAGKFEAKFFD-KILQE--EIGGVKGHFGPIN-ALAFNPDGKRYGFLL  307 (313)
Q Consensus       252 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~--~~~~~~~h~~~V~-~~~fspdgk~~~~~~  307 (313)
                      +.....      ......+..|| ...++  +...+..+...+. .++|||||+.++|..
T Consensus       325 ~~~~~~------~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~~~~~spdg~~l~~~~  378 (723)
T 1xfd_A          325 AIPQGG------RGKFYHITVSSSQPNSSNDNIQSITSGDWDVTKILAYDEKGNKIYFLS  378 (723)
T ss_dssp             EECCSS------SSCEEEEEEECSSCCSSSCCCCBSCCSSSCEEEEEEEETTTTEEEEEE
T ss_pred             ecccCC------CcceeEEEEEeccCCCCccceeEeecCCeEEEeeeEEcCCCCEEEEEE
Confidence            222210      00011234444 22222  0233332333444 479999999998865

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=99.91  E-value=1.9e-21  Score=165.54  Aligned_cols=274  Identities=12%  Similarity=0.051  Sum_probs=176.0

Q ss_pred             EEEccCCCE-EEEeeCCCCeEEEeCCCCcEEEEecCCCCceEEEEECCCCCeEEEee-CCCcEEEEECCCCeE-EEEecC
Q 021399           16 LKYNKDGDL-LFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGS-ADQTAKLWNVETGAQ-LFTFNF   92 (313)
Q Consensus        16 ~~fs~~g~~-l~s~s~d~~i~iw~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s-~D~~v~vWd~~~~~~-~~~~~~   92 (313)
                      ..|++++++ +++.+.++.|++||.++++.+..+..+...+ +++|+|+++.++.++ .++.|.+||+.+++. ......
T Consensus         3 ~~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~   81 (331)
T 3u4y_A            3 AMFQTTSNFGIVVEQHLRRISFFSTDTLEILNQITLGYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPPKVVAIQE   81 (331)
T ss_dssp             ----CCCCEEEEEEGGGTEEEEEETTTCCEEEEEECCCCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSCEEEEEEE
T ss_pred             eeEcCCCCEEEEEecCCCeEEEEeCcccceeeeEEccCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCceeEEeccc
Confidence            346666655 7777889999999999999988888777777 999999998665555 489999999998876 555544


Q ss_pred             CCCeeE-EEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEccCCCEEEE-eeCCCe-
Q 021399           93 DSPARS-VDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIIS-AGEDAI-  169 (313)
Q Consensus        93 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~t-~~~d~~-  169 (313)
                      ...... +.++++++.+++....-.  ...+.++++      ..++.+..+.. ......+.|+|+++++++ ...++. 
T Consensus        82 ~~~~~~~~~~s~dg~~l~~~~~~~~--~~~i~v~d~------~~~~~~~~~~~-~~~~~~~~~spdg~~l~~~~~~~~~~  152 (331)
T 3u4y_A           82 GQSSMADVDITPDDQFAVTVTGLNH--PFNMQSYSF------LKNKFISTIPI-PYDAVGIAISPNGNGLILIDRSSANT  152 (331)
T ss_dssp             CSSCCCCEEECTTSSEEEECCCSSS--SCEEEEEET------TTTEEEEEEEC-CTTEEEEEECTTSSCEEEEEETTTTE
T ss_pred             CCCCccceEECCCCCEEEEecCCCC--cccEEEEEC------CCCCeEEEEEC-CCCccceEECCCCCEEEEEecCCCce
Confidence            444444 888988776664332100  001222222      12233333333 334588999999985554 455578 


Q ss_pred             EEEEECCCCceeeec-ccccCceeceEEEEECCCCCEEEE-eeCCCcEEEEECCCCcE---EEEEecCCceeEEEeccCC
Q 021399          170 VRIWDTETGKLLKES-DKETGHKKTITSLAKAADGSHFLT-GSLDKSAKLWDARTLEL---IKTYVTERPVNAVTMSPLL  244 (313)
Q Consensus       170 i~lwd~~~~~~~~~~-~~~~~h~~~v~~~~~s~~~~~l~s-~s~dg~i~iwd~~~~~~---~~~~~~~~~~~~~~~~p~~  244 (313)
                      |.+|++.....+... ............++|+|+|++++. +..++.|++||+++++.   +..+.....+..++|+|++
T Consensus       153 i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~spdg  232 (331)
T 3u4y_A          153 VRRFKIDADGVLFDTGQEFISGGTRPFNITFTPDGNFAFVANLIGNSIGILETQNPENITLLNAVGTNNLPGTIVVSRDG  232 (331)
T ss_dssp             EEEEEECTTCCEEEEEEEEECSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTSCEEEEEEECSSCCCCEEECTTS
T ss_pred             EEEEEECCCCcEeecCCccccCCCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcccceeeeccCCCCCceEEECCCC
Confidence            999998653332111 111123345789999999996655 45689999999999888   7777777778899999999


Q ss_pred             CEEEEcccccCceeEeeccCCCceeeeeeehhhhhhhcccccccc---ceeEEEECCCCCeeEEE
Q 021399          245 DHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFG---PINALAFNPDGKRYGFL  306 (313)
Q Consensus       245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~---~V~~~~fspdgk~~~~~  306 (313)
                      ..++++...+ ..+..+|...++....- ..     ...+..+..   ....++|+|||+++.+.
T Consensus       233 ~~l~v~~~~~-~~i~~~d~~~~~~~~~~-~~-----~~~~~~~~~~~~~~~~~~~spdg~~l~v~  290 (331)
T 3u4y_A          233 STVYVLTEST-VDVFNFNQLSGTLSFVK-SF-----GHGLLIDPRPLFGANQMALNKTETKLFIS  290 (331)
T ss_dssp             SEEEEECSSE-EEEEEEETTTTEEEEEE-EE-----ECCCCCCCGGGTTCCCEEECTTSSEEEEE
T ss_pred             CEEEEEEcCC-CEEEEEECCCCceeeec-cc-----ccccccCCCCcccccceEECCCCCEEEEe
Confidence            9887765433 33555665554431100 00     001111122   22568999999987543

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=99.90  E-value=2.6e-21  Score=165.05  Aligned_cols=277  Identities=9%  Similarity=0.057  Sum_probs=173.6

Q ss_pred             cccccceeEEEEccCCCEEEEeeCC-CCeEEEeCC--CCc--EEEEecCCCCceEEEEECCCCCeEEEee-CCCcEEEEE
Q 021399            7 KGHERPLTYLKYNKDGDLLFSCAKD-HTPTVWFAD--NGE--RLGTYRGHNGAVWCCDVSRDSMTLITGS-ADQTAKLWN   80 (313)
Q Consensus         7 ~~h~~~v~~~~fs~~g~~l~s~s~d-~~i~iw~~~--~~~--~~~~~~~H~~~V~~~~~~~~~~~l~s~s-~D~~v~vWd   80 (313)
                      ..|...+.+++|+|+|++|++++.+ +.|++|+++  +++  .+..+..+. .+..++|+|+++.+++++ .++.|++||
T Consensus        34 ~~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~~~~i~~~d  112 (343)
T 1ri6_A           34 VDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPG-SLTHISTDHQGQFVFVGSYNAGNVSVTR  112 (343)
T ss_dssp             EECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSS-CCSEEEECTTSSEEEEEETTTTEEEEEE
T ss_pred             EecCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCceeeccccccCC-CCcEEEEcCCCCEEEEEecCCCeEEEEE
Confidence            4567788999999999999998887 999999987  554  345555544 788999999999776665 488999999


Q ss_pred             CC---CCeEEEEecCCCCeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEE--EecC-CCCceEEEEE
Q 021399           81 VE---TGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVL--ILKG-PQGRINRAVW  154 (313)
Q Consensus        81 ~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~-~~~~i~~~~~  154 (313)
                      +.   ..+.+........+..+.|++++..+++...    ....+.++++..+   .......  .... ....+..+.|
T Consensus       113 ~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~----~~~~v~~~d~~~~---~~~~~~~~~~~~~~~~~~~~~~~~  185 (343)
T 1ri6_A          113 LEDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPAL----KQDRICLFTVSDD---GHLVAQDPAEVTTVEGAGPRHMVF  185 (343)
T ss_dssp             EETTEEEEEEEEECCCTTBCCCEECTTSSEEEEEEG----GGTEEEEEEECTT---SCEEEEEEEEEECSTTCCEEEEEE
T ss_pred             CCCCccccccccccCCCCceEEEECCCCCEEEEecC----CCCEEEEEEecCC---CceeeecccccccCCCCCcceEEE
Confidence            94   3334444444456777888887764444321    1122333333210   0011111  2222 2346778999


Q ss_pred             ccCCCEEEEe-eCCCeEEEEECCC--Cce--eeeccc-ccC--ceeceEEEEECCCCCEEE-EeeCCCcEEEEECC----
Q 021399          155 GPLNRTIISA-GEDAIVRIWDTET--GKL--LKESDK-ETG--HKKTITSLAKAADGSHFL-TGSLDKSAKLWDAR----  221 (313)
Q Consensus       155 ~~~~~~i~t~-~~d~~i~lwd~~~--~~~--~~~~~~-~~~--h~~~v~~~~~s~~~~~l~-s~s~dg~i~iwd~~----  221 (313)
                      +|++++++.+ ..++.|++||+..  ++.  ...... ..+  ....+.+++|+|+|++|+ ++..|+.|++||++    
T Consensus       186 ~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~~~~  265 (343)
T 1ri6_A          186 HPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGS  265 (343)
T ss_dssp             CTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSC
T ss_pred             CCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCccccccCCccceEECCCCCEEEEEecCCCEEEEEEEcCCCC
Confidence            9999976555 4889999999853  332  111111 111  134577899999999877 45579999999998    


Q ss_pred             CCcEEEEEecCCceeEEEeccCCCEEEEcccccCceeEee--ccCCCceeeeeeehhhhhhhccccccccceeEEEECCC
Q 021399          222 TLELIKTYVTERPVNAVTMSPLLDHVVLGGGQDASAVTTT--DHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPD  299 (313)
Q Consensus       222 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~fspd  299 (313)
                      +.+.+..+.....+..++|+|+++.+++++..+ ..+.+|  |...+.++.          +..+.. .....+++|.|+
T Consensus       266 ~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~-~~v~v~~~d~~~g~~~~----------~~~~~~-g~~p~~i~~~~~  333 (343)
T 1ri6_A          266 VLSKEGFQPTETQPRGFNVDHSGKYLIAAGQKS-HHISVYEIVGEQGLLHE----------KGRYAV-GQGPMWVVVNAH  333 (343)
T ss_dssp             CEEEEEEEECSSSCCCEEECTTSSEEEEECTTT-CEEEEEEEETTTTEEEE----------EEEEEC-SSSCCEEEEEEE
T ss_pred             ceEEeeeecCCCccceEEECCCCCEEEEecCCC-CeEEEEEEcCCCceeeE----------cccccc-CCCCeeEEEEcc
Confidence            334555555444588999999999888876433 233333  333333211          111211 234567888888


Q ss_pred             CCee
Q 021399          300 GKRY  303 (313)
Q Consensus       300 gk~~  303 (313)
                      .++.
T Consensus       334 ~~~~  337 (343)
T 1ri6_A          334 EGGS  337 (343)
T ss_dssp             C---
T ss_pred             cCCc
Confidence            7653

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=99.90  E-value=1.2e-21  Score=184.56  Aligned_cols=274  Identities=10%  Similarity=0.038  Sum_probs=182.3

Q ss_pred             ceeEEEEccCCCEEEEeeCCCCeEEEeCCCCc--EEEEecCCCCceEEEEECCCCCeEEEeeCCCcEEEEECCCCeEEEE
Q 021399           12 PLTYLKYNKDGDLLFSCAKDHTPTVWFADNGE--RLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFT   89 (313)
Q Consensus        12 ~v~~~~fs~~g~~l~s~s~d~~i~iw~~~~~~--~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~v~vWd~~~~~~~~~   89 (313)
                      .+.+++|||||++|++++. +.|++||+.+++  ....+..|...+..++|+|||+.++.++ ++.|++||+.+++....
T Consensus       110 ~v~~~~~SpDg~~l~~~~~-~~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~SPDG~~la~~~-~~~i~~~d~~~g~~~~~  187 (741)
T 2ecf_A          110 GIVDYQWSPDAQRLLFPLG-GELYLYDLKQEGKAAVRQLTHGEGFATDAKLSPKGGFVSFIR-GRNLWVIDLASGRQMQL  187 (741)
T ss_dssp             ESCCCEECTTSSEEEEEET-TEEEEEESSSCSTTSCCBCCCSSSCEEEEEECTTSSEEEEEE-TTEEEEEETTTTEEEEC
T ss_pred             CcceeEECCCCCEEEEEeC-CcEEEEECCCCCcceEEEcccCCcccccccCCCCCCEEEEEe-CCcEEEEecCCCCEEEe
Confidence            4789999999999999987 999999999883  4456778888999999999999998877 56999999998876544


Q ss_pred             ecCCCC-----------------eeEEEeecCCeEEEEE-CCCc-eec------------------------cccceeee
Q 021399           90 FNFDSP-----------------ARSVDFAVGDKLAVIT-TDPF-MEL------------------------NSAIHVKR  126 (313)
Q Consensus        90 ~~~~~~-----------------~~~~~~~~~~~~~~~~-~~~~-~~~------------------------~~~~~~~~  126 (313)
                      ......                 ...+.|+|+++.++.. .+.. ...                        .....++.
T Consensus       188 ~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~~  267 (741)
T 2ecf_A          188 TADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLGV  267 (741)
T ss_dssp             CCCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEEE
T ss_pred             ccCCccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEEE
Confidence            332221                 3567899877654443 2210 000                        00001110


Q ss_pred             eeeCCCCCC-CceEEEec--CCCCceEEEEEccCCCEEEEeeC-----CCeEEEEECCCCceeeecccccCcee----ce
Q 021399          127 IARDPADQG-GESVLILK--GPQGRINRAVWGPLNRTIISAGE-----DAIVRIWDTETGKLLKESDKETGHKK----TI  194 (313)
Q Consensus       127 ~~~~~~~~~-~~~~~~~~--~~~~~i~~~~~~~~~~~i~t~~~-----d~~i~lwd~~~~~~~~~~~~~~~h~~----~v  194 (313)
                        .+.  .+ +.......  .+...+..+.| |+++.|+.++.     +..|++||+.+++.......   +..    .+
T Consensus       268 --~d~--~~~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~---~~~~~~~~~  339 (741)
T 2ecf_A          268 --ISP--AEQAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHE---TSPTWVPLH  339 (741)
T ss_dssp             --ECS--STTCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCEEEEEEE---ECSSCCCCC
T ss_pred             --EEC--CCCCceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCceEEEEEc---CCCCcCCcC
Confidence              011  11 12222221  35667889999 99999987653     67899999998876543321   221    34


Q ss_pred             EEEEECCCCCEEEEeeCCCcEEEEECC-CCcEEEEEec-CCceeEE-EeccCCCEEEEcccccCceeEeeccCCCceeee
Q 021399          195 TSLAKAADGSHFLTGSLDKSAKLWDAR-TLELIKTYVT-ERPVNAV-TMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAK  271 (313)
Q Consensus       195 ~~~~~s~~~~~l~s~s~dg~i~iwd~~-~~~~~~~~~~-~~~~~~~-~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  271 (313)
                      ..++|+|||+++++++.||.++||.++ ++. ...+.. ...+..+ +|+|+++.+++++..+..           ..++
T Consensus       340 ~~~~~spdg~~~~~~~~~g~~~l~~~~~~~~-~~~l~~~~~~v~~~~~~s~dg~~l~~~~~~~~~-----------~~~~  407 (741)
T 2ecf_A          340 NSLRFLDDGSILWSSERTGFQHLYRIDSKGK-AAALTHGNWSVDELLAVDEKAGLAYFRAGIESA-----------RESQ  407 (741)
T ss_dssp             SCCEECTTSCEEEEECTTSSCEEEEECSSSC-EEESCCSSSCEEEEEEEETTTTEEEEEECSSCT-----------TCBE
T ss_pred             CceEECCCCeEEEEecCCCccEEEEEcCCCC-eeeeeecceEEEeEeEEeCCCCEEEEEEeCCCC-----------ceEE
Confidence            678999999999999999988888765 344 555543 4456666 599999988776554321           1123


Q ss_pred             eeehhh-hhhhccccccccceeEEEECCCCCeeEEEEE
Q 021399          272 FFDKIL-QEEIGGVKGHFGPINALAFNPDGKRYGFLLL  308 (313)
Q Consensus       272 ~~~~~~-~~~~~~~~~h~~~V~~~~fspdgk~~~~~~~  308 (313)
                      +|+... +.....+.. ...+..++|||||+++++...
T Consensus       408 l~~~~~~g~~~~~l~~-~~~~~~~~~spdg~~l~~~~~  444 (741)
T 2ecf_A          408 IYAVPLQGGQPQRLSK-APGMHSASFARNASVYVDSWS  444 (741)
T ss_dssp             EEEEETTCCCCEECCC-SCSEEEEEECTTSSEEEEEEE
T ss_pred             EEEEEcCCCCeeeccc-CCCceEEEECCCCCEEEEEec
Confidence            343321 222233433 567889999999999988754

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=99.89  E-value=2e-22  Score=178.12  Aligned_cols=196  Identities=12%  Similarity=0.106  Sum_probs=143.8

Q ss_pred             ccceeEEEEccCCCEEEEeeCCCCeEEEeCCCC----------cEEE-----EecCCCCceEEEEECCCCCeEE----Ee
Q 021399           10 ERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNG----------ERLG-----TYRGHNGAVWCCDVSRDSMTLI----TG   70 (313)
Q Consensus        10 ~~~v~~~~fs~~g~~l~s~s~d~~i~iw~~~~~----------~~~~-----~~~~H~~~V~~~~~~~~~~~l~----s~   70 (313)
                      ...+..+++++++.++++++.|+ ++||+....          ..+.     ..-.|.+.|.+++|+|++++|+    +|
T Consensus        36 ~~~~n~lavs~~~~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~lav~~~sg  114 (434)
T 2oit_A           36 KERSSLLAVSNKYGLVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFPIHHLALSCDNLTLSACMMSS  114 (434)
T ss_dssp             CSCCBCEEEETTTTEEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCSSCEEEEEECTTSCEEEEEEEET
T ss_pred             CCCccEEEEecCCCEEEEECCCE-EEEEEchHhhhhcccccCcccccccCccccccCCCcccEEEEcCCCCEEEEEEecc
Confidence            34578999999999999999988 888864311          0111     1123567899999999999998    89


Q ss_pred             eCCCcEEEEECCCCeEEEEecCCCCeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceE
Q 021399           71 SADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRIN  150 (313)
Q Consensus        71 s~D~~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  150 (313)
                      +.|++|++||+.++..    .....                                     .........+.+|...|.
T Consensus       115 s~d~~v~iwd~~~~~~----~~~~~-------------------------------------~~~~~~~~~~~~h~~~V~  153 (434)
T 2oit_A          115 EYGSIIAFFDVRTFSN----EAKQQ-------------------------------------KRPFAYHKLLKDAGGMVI  153 (434)
T ss_dssp             TTEEEEEEEEHHHHHC----TTCSS-------------------------------------CCCSEEEECCCSGGGSEE
T ss_pred             CCCceEEEEEcccccc----CCcCC-------------------------------------cceeeeeeccCCCCCceE
Confidence            9999999999865310    00000                                     000011223456788999


Q ss_pred             EEEEccC-CCEEEEeeCCCeEEEEECCCCceeeecccccCceeceEEEEECCCCCEEEEeeCCCcEEEEECCCCcEEEEE
Q 021399          151 RAVWGPL-NRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTY  229 (313)
Q Consensus       151 ~~~~~~~-~~~i~t~~~d~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~  229 (313)
                      +++|+|. +..+++++.|++|++||++++..+...   .+|...+++++|+|+|++|++|+.||+|++||++ ++....+
T Consensus       154 ~v~~~p~~~~~las~s~Dg~v~iwD~~~~~~~~~~---~~~~~~v~~v~wspdg~~lasgs~dg~v~iwd~~-~~~~~~~  229 (434)
T 2oit_A          154 DMKWNPTVPSMVAVCLADGSIAVLQVTETVKVCAT---LPSTVAVTSVCWSPKGKQLAVGKQNGTVVQYLPT-LQEKKVI  229 (434)
T ss_dssp             EEEECSSCTTEEEEEETTSCEEEEEESSSEEEEEE---ECGGGCEEEEEECTTSSCEEEEETTSCEEEECTT-CCEEEEE
T ss_pred             EEEECCCCCCEEEEEECCCeEEEEEcCCCcceeec---cCCCCceeEEEEcCCCCEEEEEcCCCcEEEEccC-Ccccccc
Confidence            9999998 789999999999999999887554322   3588899999999999999999999999999998 5555554


Q ss_pred             ecC--------CceeEEEeccCCCEEEEcc
Q 021399          230 VTE--------RPVNAVTMSPLLDHVVLGG  251 (313)
Q Consensus       230 ~~~--------~~~~~~~~~p~~~~~~~~~  251 (313)
                      ...        ..+.+++|++.+..+++..
T Consensus       230 ~~~~~~~~~~~~~v~~v~w~~~~~~l~~~~  259 (434)
T 2oit_A          230 PCPPFYESDHPVRVLDVLWIGTYVFAIVYA  259 (434)
T ss_dssp             CCCTTCCTTSCEEEEEEEEEETTEEEEEEE
T ss_pred             cCCcccCCCCceeEEEEEEecCceEEEEEc
Confidence            321        1678899998776654433

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=99.89  E-value=9.8e-21  Score=177.41  Aligned_cols=273  Identities=11%  Similarity=0.057  Sum_probs=181.4

Q ss_pred             cceeEEEEccCCCEEEEeeCCCCeEEEeCCCCcEEEEecCCCCceEEEEECCCCCeEEEeeCCCcEEEEECCC-----Ce
Q 021399           11 RPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVET-----GA   85 (313)
Q Consensus        11 ~~v~~~~fs~~g~~l~s~s~d~~i~iw~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~v~vWd~~~-----~~   85 (313)
                      ..|.+++|||| ++++.+ .|+.+++||+.+++.. .+..|...+.+++|+|||+.++. +.|+.|++||+.+     ++
T Consensus        82 ~~v~~~~~spd-~~~~~~-~~~~i~~~d~~~~~~~-~l~~~~~~~~~~~~SpdG~~la~-~~~~~i~v~~~~~~~~~~g~  157 (706)
T 2z3z_A           82 FPSFRTLDAGR-GLVVLF-TQGGLVGFDMLARKVT-YLFDTNEETASLDFSPVGDRVAY-VRNHNLYIARGGKLGEGMSR  157 (706)
T ss_dssp             CCCEEEEETTT-TEEEEE-ETTEEEEEETTTTEEE-EEECCTTCCTTCEECTTSSEEEE-EETTEEEEEECBCTTSCCCC
T ss_pred             cCceeEEECCC-CeEEEE-ECCEEEEEECCCCceE-EccCCcccccCCcCCCCCCEEEE-EECCeEEEEecCcccccCCC
Confidence            56999999999 666555 4599999999888654 45556778889999999999888 4789999999988     76


Q ss_pred             EEEEecCCCC---------------eeEEEeecCCeEEEEEC-CCc----ee-----------------------ccccc
Q 021399           86 QLFTFNFDSP---------------ARSVDFAVGDKLAVITT-DPF----ME-----------------------LNSAI  122 (313)
Q Consensus        86 ~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~-~~~----~~-----------------------~~~~~  122 (313)
                      ..........               ...+.|+|+++.++... +..    ..                       ....+
T Consensus       158 ~~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l  237 (706)
T 2z3z_A          158 AIAVTIDGTETLVYGQAVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTV  237 (706)
T ss_dssp             CEESCSCCBTTEEESSCCGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEE
T ss_pred             cEEeccCCCCCeEcccchhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEE
Confidence            5543332222               36788999877655543 100    00                       00001


Q ss_pred             eeeeeeeCCCCCCCceEEEe--cCCCCceEEEEEccCCCEEEEeeCCC-----eEEEEECCCCceeeecccc--cCceec
Q 021399          123 HVKRIARDPADQGGESVLIL--KGPQGRINRAVWGPLNRTIISAGEDA-----IVRIWDTETGKLLKESDKE--TGHKKT  193 (313)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~~--~~~~~~i~~~~~~~~~~~i~t~~~d~-----~i~lwd~~~~~~~~~~~~~--~~h~~~  193 (313)
                      .++++      .++......  ..+...+..+.|+|+++.+++++.++     .|++||+.+++....+...  ......
T Consensus       238 ~~~d~------~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~  311 (706)
T 2z3z_A          238 GIYHL------ATGKTVYLQTGEPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEP  311 (706)
T ss_dssp             EEEET------TTTEEEECCCCSCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCC
T ss_pred             EEEEC------CCCceEeeccCCCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeECc
Confidence            11111      112211111  13556788999999999999887665     8999999988433332211  111112


Q ss_pred             eEEEEECC--CCCEEEEeeCCCcEEEEECC-CCcEEEEEec-CCceeE-EEeccCCCEEEEcccccC---ceeEeeccCC
Q 021399          194 ITSLAKAA--DGSHFLTGSLDKSAKLWDAR-TLELIKTYVT-ERPVNA-VTMSPLLDHVVLGGGQDA---SAVTTTDHRA  265 (313)
Q Consensus       194 v~~~~~s~--~~~~l~s~s~dg~i~iwd~~-~~~~~~~~~~-~~~~~~-~~~~p~~~~~~~~~~~~~---~~~~~~~~~~  265 (313)
                      +.+++|+|  ||+++++++.|+.+++|+++ ++..+..+.. ...+.. ++|+|+++.+++++..+.   ..++.     
T Consensus       312 ~~~~~~sp~~dg~~l~~~~~~g~~~l~~~~~~~~~~~~l~~~~~~v~~~~~~spdg~~l~~~~~~~~~~~~~l~~-----  386 (706)
T 2z3z_A          312 LHPLTFLPGSNNQFIWQSRRDGWNHLYLYDTTGRLIRQVTKGEWEVTNFAGFDPKGTRLYFESTEASPLERHFYC-----  386 (706)
T ss_dssp             CSCCEECTTCSSEEEEEECTTSSCEEEEEETTSCEEEECCCSSSCEEEEEEECTTSSEEEEEESSSCTTCBEEEE-----
T ss_pred             cCCceeecCCCCEEEEEEccCCccEEEEEECCCCEEEecCCCCeEEEeeeEEcCCCCEEEEEecCCCCceEEEEE-----
Confidence            46789999  99999999999999999876 5666666643 334555 799999998887765443   23333     


Q ss_pred             CceeeeeeehhhhhhhccccccccceeEEEECCCCCeeEEEE
Q 021399          266 GKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKRYGFLL  307 (313)
Q Consensus       266 ~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~fspdgk~~~~~~  307 (313)
                             ||..+++ ...+ .|...+.+++|||||+++++..
T Consensus       387 -------~d~~~~~-~~~l-~~~~~~~~~~~spdg~~l~~~~  419 (706)
T 2z3z_A          387 -------IDIKGGK-TKDL-TPESGMHRTQLSPDGSAIIDIF  419 (706)
T ss_dssp             -------EETTCCC-CEES-CCSSSEEEEEECTTSSEEEEEE
T ss_pred             -------EEcCCCC-ceec-cCCCceEEEEECCCCCEEEEEe
Confidence                   3333222 1222 3667899999999999988764

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=99.88  E-value=7.3e-21  Score=185.61  Aligned_cols=276  Identities=14%  Similarity=0.106  Sum_probs=196.7

Q ss_pred             cccccccceeEEEEccCCCEEEEeeCCCCeEEEeCCC-CcEEEEecCCCCceEEEEECCCCCeEEEeeCCCcEEEEECCC
Q 021399            5 LMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADN-GERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVET   83 (313)
Q Consensus         5 ~l~~h~~~v~~~~fs~~g~~l~s~s~d~~i~iw~~~~-~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~v~vWd~~~   83 (313)
                      .+.+|...+.++.|+++ ..+++++.|+.++||..+. +.....+..|. .+...+|+|||+.++.+ .++.|.+||+..
T Consensus       198 ~l~~~~~~v~~~~~s~d-~l~~~~~~dg~~~l~~~~~~g~~~~~l~~~~-~~~~~~~SpDG~~la~~-~~~~i~~~d~~~  274 (1045)
T 1k32_A          198 KIVDMSTHVSSPVIVGH-RIYFITDIDGFGQIYSTDLDGKDLRKHTSFT-DYYPRHLNTDGRRILFS-KGGSIYIFNPDT  274 (1045)
T ss_dssp             EEECCSSCCEEEEEETT-EEEEEECTTSSCEEEEEETTSCSCEECCCCC-SSCEEEEEESSSCEEEE-ETTEEEEECTTT
T ss_pred             ECcCCCCcccceEEeCC-EEEEEEeccCceEEEEEeCCCCcceEecCCC-CcceeeEcCCCCEEEEE-eCCEEEEecCCc
Confidence            45789999999999988 6777888899999997653 44455666665 46677999999988886 589999999955


Q ss_pred             CeEEEEecCC------------CCeeEEEee-cCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCC-ce
Q 021399           84 GAQLFTFNFD------------SPARSVDFA-VGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQG-RI  149 (313)
Q Consensus        84 ~~~~~~~~~~------------~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~i  149 (313)
                      .... .+...            ..+..+.|+ |+++.++.....      .+..++.      ..+ ....+..+.. .+
T Consensus       275 ~~l~-~l~~~~~~~~~~~~~~~~~v~~~~~S~pdG~~la~~~~~------~i~~~~~------~~~-~~~~~~~~~~~~~  340 (1045)
T 1k32_A          275 EKIE-KIEIGDLESPEDRIISIPSKFAEDFSPLDGDLIAFVSRG------QAFIQDV------SGT-YVLKVPEPLRIRY  340 (1045)
T ss_dssp             CCEE-ECCCCCCCBCCSEEEECGGGGEEEEEECGGGCEEEEETT------EEEEECT------TSS-BEEECSCCSCEEE
T ss_pred             eEee-eeccCcccccccccccccccceeeecCCCCCEEEEEEcC------EEEEEcC------CCC-ceEEccCCCcceE
Confidence            4433 33221            146788898 876644443321      1111111      111 2333555666 78


Q ss_pred             EEEEEccCCCEEEEeeCCCeEE-EEECCCCceeeecccccCceeceEEEEECCCCCEEEEeeCCCcEEEEECCCCcEEEE
Q 021399          150 NRAVWGPLNRTIISAGEDAIVR-IWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKT  228 (313)
Q Consensus       150 ~~~~~~~~~~~i~t~~~d~~i~-lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~  228 (313)
                      ..+.|+ +++.++.++.+..+. +||+..++.. .+.   +|...+..++|+|||++|++++.++.|++||+++++....
T Consensus       341 ~~~~~s-dg~~l~~~s~~~~l~~~~d~~~~~~~-~l~---~~~~~~~~~~~SpDG~~la~~~~~~~v~~~d~~tg~~~~~  415 (1045)
T 1k32_A          341 VRRGGD-TKVAFIHGTREGDFLGIYDYRTGKAE-KFE---ENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVI  415 (1045)
T ss_dssp             EEECSS-SEEEEEEEETTEEEEEEEETTTCCEE-ECC---CCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEE
T ss_pred             EeeeEc-CCCeEEEEECCCceEEEEECCCCCce-Eec---CCccceeeeEECCCCCEEEEECCCCeEEEEECCCCceEEe
Confidence            899999 999999999888888 9998876543 222   5778899999999999999999999999999999988766


Q ss_pred             E-ecCCceeEEEeccCCCEEEEcccccCceeEeeccCCCceeeeeeehhhhhhhccccccccceeEEEECCCCCeeEEEE
Q 021399          229 Y-VTERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKRYGFLL  307 (313)
Q Consensus       229 ~-~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~fspdgk~~~~~~  307 (313)
                      . .+...+..++|+|++..++.++...+...    .......+++||..+++ +..+..|...+..++|+|||++++|..
T Consensus       416 ~~~~~~~v~~~~~SpDG~~la~~~~~~~~~~----~~~~~~~i~l~d~~~g~-~~~l~~~~~~~~~~~~spdG~~l~~~s  490 (1045)
T 1k32_A          416 ERSREAMITDFTISDNSRFIAYGFPLKHGET----DGYVMQAIHVYDMEGRK-IFAATTENSHDYAPAFDADSKNLYYLS  490 (1045)
T ss_dssp             EECSSSCCCCEEECTTSCEEEEEEEECSSTT----CSCCEEEEEEEETTTTE-EEECSCSSSBEEEEEECTTSCEEEEEE
T ss_pred             ccCCCCCccceEECCCCCeEEEEecCccccc----cCCCCCeEEEEECCCCc-EEEeeCCCcccCCceEcCCCCEEEEEe
Confidence            6 34556789999999998877643220000    00012245667766554 455667888899999999999998764

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=99.88  E-value=2.7e-20  Score=158.38  Aligned_cols=243  Identities=9%  Similarity=0.034  Sum_probs=166.6

Q ss_pred             ccccceeEEEEccCCCEEEEeeC-CCCeEEEeCCCCcE-EEEecCCCCceEEEEECCCCCeEEEeeCCC---cEEEEECC
Q 021399            8 GHERPLTYLKYNKDGDLLFSCAK-DHTPTVWFADNGER-LGTYRGHNGAVWCCDVSRDSMTLITGSADQ---TAKLWNVE   82 (313)
Q Consensus         8 ~h~~~v~~~~fs~~g~~l~s~s~-d~~i~iw~~~~~~~-~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~---~v~vWd~~   82 (313)
                      .+...+ +++|+|+|++|+.++. ++.|.+||.++++. ...+..+..+..+++|+|++++++++..++   .|++||+.
T Consensus        38 ~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~  116 (331)
T 3u4y_A           38 LGYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPPKVVAIQEGQSSMADVDITPDDQFAVTVTGLNHPFNMQSYSFL  116 (331)
T ss_dssp             CCCCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSCEEEEEEECSSCCCCEEECTTSSEEEECCCSSSSCEEEEEETT
T ss_pred             ccCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCceeEEecccCCCCccceEECCCCCEEEEecCCCCcccEEEEECC
Confidence            345556 9999999997777665 89999999999987 777877777777699999999888655553   89999999


Q ss_pred             CCeEEEEecCCCCeeEEEeecCCeEE-EEECCCceecccc-ceeeeeeeCCCCCCCceEEEecCCCCceEEEEEccCCCE
Q 021399           83 TGAQLFTFNFDSPARSVDFAVGDKLA-VITTDPFMELNSA-IHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRT  160 (313)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~  160 (313)
                      +++.+..+........+.|+|+++.+ +....     ... +..+++..+....... ...+ ........+.|+|++++
T Consensus       117 ~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~-----~~~~i~~~~~~~~g~~~~~~-~~~~-~~~~~~~~~~~spdg~~  189 (331)
T 3u4y_A          117 KNKFISTIPIPYDAVGIAISPNGNGLILIDRS-----SANTVRRFKIDADGVLFDTG-QEFI-SGGTRPFNITFTPDGNF  189 (331)
T ss_dssp             TTEEEEEEECCTTEEEEEECTTSSCEEEEEET-----TTTEEEEEEECTTCCEEEEE-EEEE-CSSSSEEEEEECTTSSE
T ss_pred             CCCeEEEEECCCCccceEECCCCCEEEEEecC-----CCceEEEEEECCCCcEeecC-Cccc-cCCCCccceEECCCCCE
Confidence            99888777766677889999987533 33222     111 2223322100000000 1111 22345688999999986


Q ss_pred             EE-EeeCCCeEEEEECCCCce---eeecccccCceeceEEEEECCCCCEEEEee-CCCcEEEEECCCCcE--EEEEecC-
Q 021399          161 II-SAGEDAIVRIWDTETGKL---LKESDKETGHKKTITSLAKAADGSHFLTGS-LDKSAKLWDARTLEL--IKTYVTE-  232 (313)
Q Consensus       161 i~-t~~~d~~i~lwd~~~~~~---~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s-~dg~i~iwd~~~~~~--~~~~~~~-  232 (313)
                      ++ ++..++.|++||+.+++.   +..+.    ....+..++|+|||++++.++ .++.|.+||+++++.  +..+... 
T Consensus       190 l~v~~~~~~~v~v~d~~~~~~~~~~~~~~----~~~~~~~~~~spdg~~l~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~  265 (331)
T 3u4y_A          190 AFVANLIGNSIGILETQNPENITLLNAVG----TNNLPGTIVVSRDGSTVYVLTESTVDVFNFNQLSGTLSFVKSFGHGL  265 (331)
T ss_dssp             EEEEETTTTEEEEEECSSTTSCEEEEEEE----CSSCCCCEEECTTSSEEEEECSSEEEEEEEETTTTEEEEEEEEECCC
T ss_pred             EEEEeCCCCeEEEEECCCCcccceeeecc----CCCCCceEEECCCCCEEEEEEcCCCEEEEEECCCCceeeeccccccc
Confidence            54 455789999999998877   54443    235678899999999776554 578899999999877  4443321 


Q ss_pred             ----Cc---eeEEEeccCCCEEEEcccccCceeEeecc
Q 021399          233 ----RP---VNAVTMSPLLDHVVLGGGQDASAVTTTDH  263 (313)
Q Consensus       233 ----~~---~~~~~~~p~~~~~~~~~~~~~~~~~~~~~  263 (313)
                          .+   .+.++|+|++..+++++.. .+.+.+||.
T Consensus       266 ~~~~~~~~~~~~~~~spdg~~l~v~~~~-~~~v~v~d~  302 (331)
T 3u4y_A          266 LIDPRPLFGANQMALNKTETKLFISANI-SRELKVFTI  302 (331)
T ss_dssp             CCCCGGGTTCCCEEECTTSSEEEEEETT-TTEEEEEET
T ss_pred             ccCCCCcccccceEECCCCCEEEEecCC-CCcEEEEEe
Confidence                11   2458999999998876543 333444443

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=99.88  E-value=3e-21  Score=177.09  Aligned_cols=254  Identities=13%  Similarity=0.070  Sum_probs=168.6

Q ss_pred             ccceeEEEEccCCCEEEEeeC-CCCeEEEeCCCCcEEEEecCCC-CceEEEEECCCCCeEEEeeC---CCcEEEEECCC-
Q 021399           10 ERPLTYLKYNKDGDLLFSCAK-DHTPTVWFADNGERLGTYRGHN-GAVWCCDVSRDSMTLITGSA---DQTAKLWNVET-   83 (313)
Q Consensus        10 ~~~v~~~~fs~~g~~l~s~s~-d~~i~iw~~~~~~~~~~~~~H~-~~V~~~~~~~~~~~l~s~s~---D~~v~vWd~~~-   83 (313)
                      ..+|++++|+|||++|++++. |++++||++++++. ..+..|. ..|.+++|+|| +++++++.   +...++|.+.. 
T Consensus        21 ~~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g~~-~~lt~~~~~~~~~~~~spd-~~l~~~~~~~g~~~~~l~~~~~~   98 (582)
T 3o4h_A           21 AVEKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGGET-VKLNREPINSVLDPHYGVG-RVILVRDVSKGAEQHALFKVNTS   98 (582)
T ss_dssp             HSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTEE-EECCSSCCSEECEECTTCS-EEEEEEECSTTSCCEEEEEEETT
T ss_pred             ccchheeecCCCCCeEEEEEccCCceeEEEEcCCCc-EeeecccccccccccCCCC-eEEEEeccCCCCcceEEEEEecc
Confidence            457999999999999999987 99999999866655 4555555 68999999999 78887775   55566765432 


Q ss_pred             --CeEEEEecCCCCeeEEEeecCCe-EEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEccCCCE
Q 021399           84 --GAQLFTFNFDSPARSVDFAVGDK-LAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRT  160 (313)
Q Consensus        84 --~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~  160 (313)
                        +... .+..........|+++.+ ++++....     ....++++.      ++........ ..  .++.|+|+|+.
T Consensus        99 ~~g~~~-~l~~~~~~~~~~~s~dg~~~~~~s~~~-----~~~~l~d~~------~g~~~~l~~~-~~--~~~~~spDG~~  163 (582)
T 3o4h_A           99 RPGEEQ-RLEAVKPMRILSGVDTGEAVVFTGATE-----DRVALYALD------GGGLRELARL-PG--FGFVSDIRGDL  163 (582)
T ss_dssp             STTCCE-ECTTSCSBEEEEEEECSSCEEEEEECS-----SCEEEEEEE------TTEEEEEEEE-SS--CEEEEEEETTE
T ss_pred             CCCccc-cccCCCCceeeeeCCCCCeEEEEecCC-----CCceEEEcc------CCcEEEeecC-CC--ceEEECCCCCE
Confidence              2222 333233344556776543 33322111     111133322      1222222222 22  78899999999


Q ss_pred             EEEeeCC----CeEEEEECCCCceeeecccccCceeceEEEEECCCCCEEEEeeCCC--cEEEEECCCCcEEEEEe-cCC
Q 021399          161 IISAGED----AIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDK--SAKLWDARTLELIKTYV-TER  233 (313)
Q Consensus       161 i~t~~~d----~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~dg--~i~iwd~~~~~~~~~~~-~~~  233 (313)
                      +++++.+    ..|++||+.+++.. .+   ..|...+..++|+|||+.|+++..++  .|++||++++++. .+. +..
T Consensus       164 la~~~~~~~~~~~i~~~d~~~g~~~-~l---~~~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~~~-~~~~~~~  238 (582)
T 3o4h_A          164 IAGLGFFGGGRVSLFTSNLSSGGLR-VF---DSGEGSFSSASISPGMKVTAGLETAREARLVTVDPRDGSVE-DLELPSK  238 (582)
T ss_dssp             EEEEEEEETTEEEEEEEETTTCCCE-EE---CCSSCEEEEEEECTTSCEEEEEECSSCEEEEEECTTTCCEE-ECCCSCS
T ss_pred             EEEEEEcCCCCeEEEEEcCCCCCce-Ee---ecCCCccccceECCCCCEEEEccCCCeeEEEEEcCCCCcEE-EccCCCc
Confidence            9988877    78999999887653 23   35677889999999999999888898  8999999998877 433 233


Q ss_pred             ceeEEE--------eccCCCEEEEcccccCceeEeeccCCCceeeeeeehhhhhhhccccccccceeEEEECCCCCeeEE
Q 021399          234 PVNAVT--------MSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKRYGF  305 (313)
Q Consensus       234 ~~~~~~--------~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~fspdgk~~~~  305 (313)
                      .+..++        |+|++ .+++++..++ .            .++|+.  ++...   .+.+.|.+++|+ ||+.+..
T Consensus       239 ~~~~~~~~~~~~~~~spdg-~~~~~~~~~g-~------------~~l~~~--g~~~~---~~~~~v~~~~~s-dg~~l~~  298 (582)
T 3o4h_A          239 DFSSYRPTAITWLGYLPDG-RLAVVARREG-R------------SAVFID--GERVE---APQGNHGRVVLW-RGKLVTS  298 (582)
T ss_dssp             HHHHHCCSEEEEEEECTTS-CEEEEEEETT-E------------EEEEET--TEEEC---CCSSEEEEEEEE-TTEEEEE
T ss_pred             ChhhhhhccccceeEcCCC-cEEEEEEcCC-c------------EEEEEE--CCeec---cCCCceEEEEec-CCEEEEE
Confidence            455556        99999 5555544332 2            334444  32222   234678999999 9987643

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=99.88  E-value=1.8e-20  Score=182.89  Aligned_cols=279  Identities=11%  Similarity=-0.019  Sum_probs=184.8

Q ss_pred             cccccccccceeEEEEccCCCEEEEeeCC------CCeEEEeCCCCcEEEEecCCCCce-------EEEEECCCCCeEEE
Q 021399            3 PILMKGHERPLTYLKYNKDGDLLFSCAKD------HTPTVWFADNGERLGTYRGHNGAV-------WCCDVSRDSMTLIT   69 (313)
Q Consensus         3 ~~~l~~h~~~v~~~~fs~~g~~l~s~s~d------~~i~iw~~~~~~~~~~~~~H~~~V-------~~~~~~~~~~~l~s   69 (313)
                      ++.|.+|...+.+++|||||++|++++.+      ..|++|+.++++ ...+..|...+       .+++|+|||+++++
T Consensus        45 ~~~lt~~~~~v~~~~~SPDG~~la~~s~~~~~~~~~~i~~~d~~~g~-~~~lt~~~~~~~~~~~~~~~~~~SpDg~ll~~  123 (1045)
T 1k32_A           45 TRKIVSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGE-IKRITYFSGKSTGRRMFTDVAGFDPDGNLIIS  123 (1045)
T ss_dssp             EEEEECSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTE-EEECCCCCEEEETTEECSEEEEECTTCCEEEE
T ss_pred             EEEeeeCCCcccCeEECCCCCEEEEEEeeccCCCCCeEEEEECCCCC-eEEcccCCCcccccccccccccCCCCCEEEEE
Confidence            56778899999999999999999988654      479999998876 57888999888       99999999998888


Q ss_pred             eeCC------CcEEEEECCCCeEEEEecC--------------------------------------------------C
Q 021399           70 GSAD------QTAKLWNVETGAQLFTFNF--------------------------------------------------D   93 (313)
Q Consensus        70 ~s~D------~~v~vWd~~~~~~~~~~~~--------------------------------------------------~   93 (313)
                      ++.+      ..+.+||+.+++.......                                                  .
T Consensus       124 ~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~spG~l~~~~~~~~~~~~~~~~g~~~~~lw~~~~~~~~~~l~~~~  203 (1045)
T 1k32_A          124 TDAMQPFSSMTCLYRVENDGINFVPLNLGPATHILFADGRRVIGRNTFELPHWKGYRGGTRGKIWIEVNSGAFKKIVDMS  203 (1045)
T ss_dssp             ECTTSSSTTCCEEEEEEGGGTEEEECCSCSCSEEEEETTEEEEEESCSCCTTSTTCCSTTCCEEEEEEETTEEEEEECCS
T ss_pred             ECCcCCCcccceEEEEECCCCCeEEecCCCcceeeeCCCEEEEeccCCCccccccccCCCcCCEEEECCCCCeEECcCCC
Confidence            7755      3577778776654322111                                                  0


Q ss_pred             CCeeEEEeecCCeEEEEECCCceeccccceeeeeee-------------------CCCCC---------------CCceE
Q 021399           94 SPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIAR-------------------DPADQ---------------GGESV  139 (313)
Q Consensus        94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------~~~~~---------------~~~~~  139 (313)
                      .....+.|.++ .++......     ....++.+..                   .+...               ....+
T Consensus       204 ~~v~~~~~s~d-~l~~~~~~d-----g~~~l~~~~~~g~~~~~l~~~~~~~~~~~SpDG~~la~~~~~~i~~~d~~~~~l  277 (1045)
T 1k32_A          204 THVSSPVIVGH-RIYFITDID-----GFGQIYSTDLDGKDLRKHTSFTDYYPRHLNTDGRRILFSKGGSIYIFNPDTEKI  277 (1045)
T ss_dssp             SCCEEEEEETT-EEEEEECTT-----SSCEEEEEETTSCSCEECCCCCSSCEEEEEESSSCEEEEETTEEEEECTTTCCE
T ss_pred             CcccceEEeCC-EEEEEEecc-----CceEEEEEeCCCCcceEecCCCCcceeeEcCCCCEEEEEeCCEEEEecCCceEe
Confidence            11112222222 222221110     0001111000                   00000               00111


Q ss_pred             EEecC-----------CCCceEEEEEc-cCCCEEEEeeCCCeEEEEECCCCceeeecccccCcee-ceEEEEECCCCCEE
Q 021399          140 LILKG-----------PQGRINRAVWG-PLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKK-TITSLAKAADGSHF  206 (313)
Q Consensus       140 ~~~~~-----------~~~~i~~~~~~-~~~~~i~t~~~d~~i~lwd~~~~~~~~~~~~~~~h~~-~v~~~~~s~~~~~l  206 (313)
                      ..+.+           |...+..+.|+ |+++.+++++ ++.|.+|+...+.... +   ..|.. .+..++|+ ||+.|
T Consensus       278 ~~l~~~~~~~~~~~~~~~~~v~~~~~S~pdG~~la~~~-~~~i~~~~~~~~~~~~-~---~~~~~~~~~~~~~s-dg~~l  351 (1045)
T 1k32_A          278 EKIEIGDLESPEDRIISIPSKFAEDFSPLDGDLIAFVS-RGQAFIQDVSGTYVLK-V---PEPLRIRYVRRGGD-TKVAF  351 (1045)
T ss_dssp             EECCCCCCCBCCSEEEECGGGGEEEEEECGGGCEEEEE-TTEEEEECTTSSBEEE-C---SCCSCEEEEEECSS-SEEEE
T ss_pred             eeeccCcccccccccccccccceeeecCCCCCEEEEEE-cCEEEEEcCCCCceEE-c---cCCCcceEEeeeEc-CCCeE
Confidence            11222           12357789999 9999888887 7889999988766433 2   23555 78999999 99999


Q ss_pred             EEeeCCCcEE-EEECCCCcEEEEEecCCceeEEEeccCCCEEEEcccccCceeEeeccCCCceeeeeeehhhhhhhcccc
Q 021399          207 LTGSLDKSAK-LWDARTLELIKTYVTERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVK  285 (313)
Q Consensus       207 ~s~s~dg~i~-iwd~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  285 (313)
                      +.++.++.+. +||+++++......+...+..++|+|++..++++...  .            .+++||..+++....+.
T Consensus       352 ~~~s~~~~l~~~~d~~~~~~~~l~~~~~~~~~~~~SpDG~~la~~~~~--~------------~v~~~d~~tg~~~~~~~  417 (1045)
T 1k32_A          352 IHGTREGDFLGIYDYRTGKAEKFEENLGNVFAMGVDRNGKFAVVANDR--F------------EIMTVDLETGKPTVIER  417 (1045)
T ss_dssp             EEEETTEEEEEEEETTTCCEEECCCCCCSEEEEEECTTSSEEEEEETT--S------------EEEEEETTTCCEEEEEE
T ss_pred             EEEECCCceEEEEECCCCCceEecCCccceeeeEECCCCCEEEEECCC--C------------eEEEEECCCCceEEecc
Confidence            9999888888 9999887764433334568899999999988765432  2            34456655554444444


Q ss_pred             ccccceeEEEECCCCCeeEEEEE
Q 021399          286 GHFGPINALAFNPDGKRYGFLLL  308 (313)
Q Consensus       286 ~h~~~V~~~~fspdgk~~~~~~~  308 (313)
                      +|.+.|.+++|||||+++++...
T Consensus       418 ~~~~~v~~~~~SpDG~~la~~~~  440 (1045)
T 1k32_A          418 SREAMITDFTISDNSRFIAYGFP  440 (1045)
T ss_dssp             CSSSCCCCEEECTTSCEEEEEEE
T ss_pred             CCCCCccceEECCCCCeEEEEec
Confidence            78899999999999999988754

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=99.88  E-value=3.5e-21  Score=180.87  Aligned_cols=281  Identities=11%  Similarity=0.064  Sum_probs=176.3

Q ss_pred             ccccccc---ceeEEEEccCCCEEEEeeCC---------CCeEEEeCCCCcE--EEEecCCCCceEEEEECCCCCeEEEe
Q 021399            5 LMKGHER---PLTYLKYNKDGDLLFSCAKD---------HTPTVWFADNGER--LGTYRGHNGAVWCCDVSRDSMTLITG   70 (313)
Q Consensus         5 ~l~~h~~---~v~~~~fs~~g~~l~s~s~d---------~~i~iw~~~~~~~--~~~~~~H~~~V~~~~~~~~~~~l~s~   70 (313)
                      ++.+|..   .|.+++|||||++|++++.+         +.+.+||+++++.  +....+|...+..++|||||+.++.+
T Consensus        52 ~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~~SPdG~~la~~  131 (723)
T 1xfd_A           52 LIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQSLDPPEVSNAKLQYAGWGPKGQQLIFI  131 (723)
T ss_dssp             EECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCCEECCCTTCCSCCCSBCCBCSSTTCEEEE
T ss_pred             EeccccccccccceEEECCCCCEEEEEecCccceeecceeeEEEEECCCCceEeccCCccccccccccEECCCCCEEEEE
Confidence            4445554   48999999999999999875         6777999998875  22233555668899999999999988


Q ss_pred             eCCCcEEEEECCCCeEEEEecC-CCC------------------eeEEEeecCCeEEEEEC-CC-c---eecc-------
Q 021399           71 SADQTAKLWNVETGAQLFTFNF-DSP------------------ARSVDFAVGDKLAVITT-DP-F---MELN-------  119 (313)
Q Consensus        71 s~D~~v~vWd~~~~~~~~~~~~-~~~------------------~~~~~~~~~~~~~~~~~-~~-~---~~~~-------  119 (313)
                      +. +.|++||+.+++....... ...                  ...+.|+|+++.++... +. .   ..+.       
T Consensus       132 ~~-~~i~~~~~~~g~~~~~~~~~~~~~~~~g~~~~v~~ee~~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~  210 (723)
T 1xfd_A          132 FE-NNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIY  210 (723)
T ss_dssp             ET-TEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSS
T ss_pred             EC-CeEEEEECCCCceEEEecCCCCCceECcccceeEEEEeccCcceEEECCCCCEEEEEEECCCccceEEeeccCCcCC
Confidence            76 7999999998876554432 112                  26788999876555432 21 0   0000       


Q ss_pred             -----------------ccceeeeeeeCCCCCCCceEEEecCC------CCceEEEEEccCCCEEEEeeC----CCeEEE
Q 021399          120 -----------------SAIHVKRIARDPADQGGESVLILKGP------QGRINRAVWGPLNRTIISAGE----DAIVRI  172 (313)
Q Consensus       120 -----------------~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~i~~~~~~~~~~~i~t~~~----d~~i~l  172 (313)
                                       ..+.++++.      ++.....+..+      ...+..+.|+|+++.+++...    +..|++
T Consensus       211 ~~~~~~~~~~~G~~~~~~~l~~~d~~------~~~~~~~l~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~  284 (723)
T 1xfd_A          211 PTVKPYHYPKAGSENPSISLHVIGLN------GPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTL  284 (723)
T ss_dssp             CCCEEEECCBTTSCCCEEEEEEEESS------SSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEE
T ss_pred             CcceeccCCCCCCCCCeeEEEEEECC------CCceeEEeeCCccCCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEE
Confidence                             011111111      11111223332      456788999999998876643    468999


Q ss_pred             EECCCCceeeecccccCceece----EEEEECCCCCEEEE--eeCCC------cEEEEE-CCCCc--EEEEEec-CCcee
Q 021399          173 WDTETGKLLKESDKETGHKKTI----TSLAKAADGSHFLT--GSLDK------SAKLWD-ARTLE--LIKTYVT-ERPVN  236 (313)
Q Consensus       173 wd~~~~~~~~~~~~~~~h~~~v----~~~~~s~~~~~l~s--~s~dg------~i~iwd-~~~~~--~~~~~~~-~~~~~  236 (313)
                      ||+.+++.......  .+...+    ..++|+|||+.|+.  +..|+      .|.+|| ..+++  +...+.. ...+.
T Consensus       285 ~d~~~g~~~~~~~~--~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~  362 (723)
T 1xfd_A          285 CDATTGVCTKKHED--ESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQSITSGDWDVT  362 (723)
T ss_dssp             EETTTCCEEEEEEE--ECSSCCCCCCCCCEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSCCCCBSCCSSSCEE
T ss_pred             EeCCCCcceEEEEe--ccCCEEeccCCCceEcCCCCeEEEEEecccCCCcceeEEEEEeccCCCCccceeEeecCCeEEE
Confidence            99998876443221  122233    37899999997775  45677      577778 44444  1344432 33344


Q ss_pred             -EEEeccCCCEEEEcccccC-ceeEeeccCCCceeeeeeehhh--hhhhccccc---cccceeEEEECCCCCeeEEE
Q 021399          237 -AVTMSPLLDHVVLGGGQDA-SAVTTTDHRAGKFEAKFFDKIL--QEEIGGVKG---HFGPINALAFNPDGKRYGFL  306 (313)
Q Consensus       237 -~~~~~p~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~---h~~~V~~~~fspdgk~~~~~  306 (313)
                       .++|+|+++.+++++..+. .            ..++|+...  ......+..   |...+..++|||||+++++.
T Consensus       363 ~~~~~spdg~~l~~~~~~~~~~------------~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~spdg~~l~~~  427 (723)
T 1xfd_A          363 KILAYDEKGNKIYFLSTEDLPR------------RRQLYSANTVGNFNRQCLSCDLVENCTYFSASFSHSMDFFLLK  427 (723)
T ss_dssp             EEEEEETTTTEEEEEESSSCTT------------CCEEEEECSSTTCCCBCSSTTSSSSCCCCEEEECTTSSEEEEE
T ss_pred             eeeEEcCCCCEEEEEEcCCCCc------------ceEEEEEeCCCCCCcceecccccCCCCeEEEEECCCCCEEEEE
Confidence             3689999999876654321 1            122333221  111222322   67789999999999998874

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=99.88  E-value=3.6e-20  Score=157.90  Aligned_cols=262  Identities=14%  Similarity=0.154  Sum_probs=163.4

Q ss_pred             EEEEeeCCCCeEEEeCC-CCc--EEEEecCCCCceEEEEECCCCCeEEEeeCC-CcEEEEECC--CCeEE--EEecCCCC
Q 021399           24 LLFSCAKDHTPTVWFAD-NGE--RLGTYRGHNGAVWCCDVSRDSMTLITGSAD-QTAKLWNVE--TGAQL--FTFNFDSP   95 (313)
Q Consensus        24 ~l~s~s~d~~i~iw~~~-~~~--~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D-~~v~vWd~~--~~~~~--~~~~~~~~   95 (313)
                      .+++++.|+.|++|+++ +++  .+.. ..|...+.+++|+|+++.+++++.+ +.|++|++.  +++..  ..+.....
T Consensus         7 l~~~~~~~~~v~~~~~~~~~~~~~~~~-~~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~   85 (343)
T 1ri6_A            7 VYIASPESQQIHVWNLNHEGALTLTQV-VDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPGS   85 (343)
T ss_dssp             EEEEEGGGTEEEEEEECTTSCEEEEEE-EECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSSC
T ss_pred             EEEeCCCCCeEEEEEECCCCcEEEeee-EecCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCceeeccccccCCC
Confidence            44444789999999985 332  2333 3477789999999999988888876 999999997  55433  33333446


Q ss_pred             eeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEccCCCEEEEee-CCCeEEEEE
Q 021399           96 ARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAG-EDAIVRIWD  174 (313)
Q Consensus        96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~t~~-~d~~i~lwd  174 (313)
                      +..+.|++++..+++....    ...+.++++. +  ............ ...+..+.|+|+++++++++ .++.|++||
T Consensus        86 ~~~~~~s~dg~~l~~~~~~----~~~i~~~d~~-~--~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d  157 (343)
T 1ri6_A           86 LTHISTDHQGQFVFVGSYN----AGNVSVTRLE-D--GLPVGVVDVVEG-LDGCHSANISPDNRTLWVPALKQDRICLFT  157 (343)
T ss_dssp             CSEEEECTTSSEEEEEETT----TTEEEEEEEE-T--TEEEEEEEEECC-CTTBCCCEECTTSSEEEEEEGGGTEEEEEE
T ss_pred             CcEEEEcCCCCEEEEEecC----CCeEEEEECC-C--CccccccccccC-CCCceEEEECCCCCEEEEecCCCCEEEEEE
Confidence            7788899877655443211    1223333331 0  001122223332 34578899999999888777 899999999


Q ss_pred             CCC-Cceeeec--ccccCceeceEEEEECCCCCEEEEee-CCCcEEEEECCC--CcE--EEEEe---c----CCceeEEE
Q 021399          175 TET-GKLLKES--DKETGHKKTITSLAKAADGSHFLTGS-LDKSAKLWDART--LEL--IKTYV---T----ERPVNAVT  239 (313)
Q Consensus       175 ~~~-~~~~~~~--~~~~~h~~~v~~~~~s~~~~~l~s~s-~dg~i~iwd~~~--~~~--~~~~~---~----~~~~~~~~  239 (313)
                      +.+ ++.....  .........+..++|+|++++++.++ .++.|++||++.  ++.  ...+.   .    ...+..++
T Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~  237 (343)
T 1ri6_A          158 VSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIH  237 (343)
T ss_dssp             ECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEE
T ss_pred             ecCCCceeeecccccccCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCccccccCCccceE
Confidence            987 5432111  11112335688899999999776554 789999999953  432  22222   1    12355799


Q ss_pred             eccCCCEEEEcccccCceeEeeccC--CCceeeeeeehhhhhhhccccccccceeEEEECCCCCeeEEE
Q 021399          240 MSPLLDHVVLGGGQDASAVTTTDHR--AGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKRYGFL  306 (313)
Q Consensus       240 ~~p~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~fspdgk~~~~~  306 (313)
                      |+|++..++++...+ ..+.+|+..  .+..          +.+..+..+.. +.+++|+|||+.+...
T Consensus       238 ~s~dg~~l~v~~~~~-~~i~v~d~~~~~~~~----------~~~~~~~~~~~-~~~~~~s~dg~~l~~~  294 (343)
T 1ri6_A          238 ITPDGRHLYACDRTA-SLITVFSVSEDGSVL----------SKEGFQPTETQ-PRGFNVDHSGKYLIAA  294 (343)
T ss_dssp             ECTTSSEEEEEETTT-TEEEEEEECTTSCCE----------EEEEEEECSSS-CCCEEECTTSSEEEEE
T ss_pred             ECCCCCEEEEEecCC-CEEEEEEEcCCCCce----------EEeeeecCCCc-cceEEECCCCCEEEEe
Confidence            999999888765433 344555543  1111          11122222333 8899999999976543

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=99.88  E-value=1e-20  Score=162.24  Aligned_cols=249  Identities=15%  Similarity=0.118  Sum_probs=158.2

Q ss_pred             ccccccceeEEEEccCCCEEEEeeC---CCCeEEEeCCCCc--EEEEecCCCCceEEEEECCCCCeEEEee-CCCcEEEE
Q 021399            6 MKGHERPLTYLKYNKDGDLLFSCAK---DHTPTVWFADNGE--RLGTYRGHNGAVWCCDVSRDSMTLITGS-ADQTAKLW   79 (313)
Q Consensus         6 l~~h~~~v~~~~fs~~g~~l~s~s~---d~~i~iw~~~~~~--~~~~~~~H~~~V~~~~~~~~~~~l~s~s-~D~~v~vW   79 (313)
                      +..+...+..++|+|||+ |++++.   ++.|++|++++++  .+..+..|...+..++|+|+++.+++++ .++++++|
T Consensus        35 ~~~~~~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~p~~~a~spdg~~l~~~~~~~~~v~v~  113 (347)
T 3hfq_A           35 LLAATQNPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQTAHKLNTVVAPGTPPAYVAVDEARQLVYSANYHKGTAEVM  113 (347)
T ss_dssp             EEEECSCCCCEEECTTCE-EEEEEEETTEEEEEEEEEETTEEEEEEEEEEESCCCSEEEEETTTTEEEEEETTTTEEEEE
T ss_pred             eeeccCCcceEEEccCCe-EEEEEecCCCceEEEEEecCCcEEEeeeeecCCCCCEEEEECCCCCEEEEEeCCCCEEEEE
Confidence            344556778899999999 665554   6899999998776  4555566777888999999999888877 78999999


Q ss_pred             ECCC-CeEEEEecCCCCeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEccCC
Q 021399           80 NVET-GAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLN  158 (313)
Q Consensus        80 d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~  158 (313)
                      ++.. +........                  ...      .        ..+.         .......+..+.|+|++
T Consensus       114 ~~~~~g~~~~~~~~------------------~~~------~--------~~p~---------~~~~~~~~~~~~~spdg  152 (347)
T 3hfq_A          114 KIAADGALTLTDTV------------------QHS------G--------HGPR---------PEQDGSHIHYTDLTPDN  152 (347)
T ss_dssp             EECTTSCEEEEEEE------------------ECC------C--------CCSS---------TTCSSCCEEEEEECTTS
T ss_pred             EeCCCCCeeeccee------------------ecC------C--------CCCC---------ccccCCCceEEEECCCC
Confidence            9853 222111000                  000      0        0000         00122357789999999


Q ss_pred             CEEEEeeCCCeEEEEECC-CCceeeecccccCceeceEEEEECCCCCEEEE-eeCCCcEEEEECCC--CcE--EEEEec-
Q 021399          159 RTIISAGEDAIVRIWDTE-TGKLLKESDKETGHKKTITSLAKAADGSHFLT-GSLDKSAKLWDART--LEL--IKTYVT-  231 (313)
Q Consensus       159 ~~i~t~~~d~~i~lwd~~-~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s-~s~dg~i~iwd~~~--~~~--~~~~~~-  231 (313)
                      +.+++...++.|++||+. +++..............+..++|+|||++++. +..++.|++|+++.  ++.  +..+.. 
T Consensus       153 ~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~  232 (347)
T 3hfq_A          153 RLAVIDLGSDKVYVYNVSDAGQLSEQSVLTMEAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTI  232 (347)
T ss_dssp             CEEEEETTTTEEEEEEECTTSCEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESS
T ss_pred             cEEEEeCCCCEEEEEEECCCCcEEEeeeEEcCCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeec
Confidence            966666778899999998 44432211111112235778999999996665 55688999999874  443  222221 


Q ss_pred             C------CceeEEEeccCCCEEEEcccccCceeEeeccCCCceeeeeeehhhhhhhccccccccceeEEEECCCCCeeEE
Q 021399          232 E------RPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKRYGF  305 (313)
Q Consensus       232 ~------~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~fspdgk~~~~  305 (313)
                      .      ..+..++|+|++..++++...+ ..+.+|+.....         ..+.+..+..|...+..++|+|||+.++.
T Consensus       233 ~~~~~~~~~~~~i~~spdG~~l~v~~~~~-~~v~v~~~~~~g---------~~~~~~~~~~~~~~~~~~~~spdg~~l~v  302 (347)
T 3hfq_A          233 PADYTAHNGAAAIRLSHDGHFLYVSNRGY-NTLAVFAVTADG---------HLTLIQQISTEGDFPRDFDLDPTEAFVVV  302 (347)
T ss_dssp             CTTCCSCCEEEEEEECTTSCEEEEEEETT-TEEEEEEECGGG---------CEEEEEEEECSSSCCCEEEECTTSSEEEE
T ss_pred             CCCCCCCCcceeEEECCCCCEEEEEeCCC-CEEEEEEECCCC---------cEEEeEEEecCCCCcCeEEECCCCCEEEE
Confidence            1      3477899999999887764332 233333321100         11222333445567899999999998755


Q ss_pred             E
Q 021399          306 L  306 (313)
Q Consensus       306 ~  306 (313)
                      .
T Consensus       303 ~  303 (347)
T 3hfq_A          303 V  303 (347)
T ss_dssp             E
T ss_pred             E
Confidence            3

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=99.87  E-value=4.1e-21  Score=169.76  Aligned_cols=163  Identities=10%  Similarity=0.006  Sum_probs=127.9

Q ss_pred             ccccceeEEEEccCCCEEE----EeeCCCCeEEEeCCCC--------c---EEEEecCCCCceEEEEECCC-CCeEEEee
Q 021399            8 GHERPLTYLKYNKDGDLLF----SCAKDHTPTVWFADNG--------E---RLGTYRGHNGAVWCCDVSRD-SMTLITGS   71 (313)
Q Consensus         8 ~h~~~v~~~~fs~~g~~l~----s~s~d~~i~iw~~~~~--------~---~~~~~~~H~~~V~~~~~~~~-~~~l~s~s   71 (313)
                      .|...|.+++|+|+|++|+    +|+.|+.|+|||+.++        +   .+..+.+|...|.+++|+|+ +++|++++
T Consensus        90 ~~~~~v~~l~~spdg~~lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s  169 (434)
T 2oit_A           90 PMKFPIHHLALSCDNLTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCL  169 (434)
T ss_dssp             CCSSCEEEEEECTTSCEEEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEE
T ss_pred             cCCCcccEEEEcCCCCEEEEEEeccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEE
Confidence            3556799999999999999    8999999999998654        1   24567789999999999998 78999999


Q ss_pred             CCCcEEEEECCCCeEEEEecCCCCeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEE
Q 021399           72 ADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINR  151 (313)
Q Consensus        72 ~D~~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~  151 (313)
                      .||+|++||++++....                                                    ...+|...+.+
T Consensus       170 ~Dg~v~iwD~~~~~~~~----------------------------------------------------~~~~~~~~v~~  197 (434)
T 2oit_A          170 ADGSIAVLQVTETVKVC----------------------------------------------------ATLPSTVAVTS  197 (434)
T ss_dssp             TTSCEEEEEESSSEEEE----------------------------------------------------EEECGGGCEEE
T ss_pred             CCCeEEEEEcCCCccee----------------------------------------------------eccCCCCceeE
Confidence            99999999998763221                                                    11235567899


Q ss_pred             EEEccCCCEEEEeeCCCeEEEEECCCCceeeecccc----cCceeceEEEEECCCCCEEEEee-CCC------cEEEEEC
Q 021399          152 AVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKE----TGHKKTITSLAKAADGSHFLTGS-LDK------SAKLWDA  220 (313)
Q Consensus       152 ~~~~~~~~~i~t~~~d~~i~lwd~~~~~~~~~~~~~----~~h~~~v~~~~~s~~~~~l~s~s-~dg------~i~iwd~  220 (313)
                      ++|+|++++|++|+.|+.|++||++ ++....+...    ..|...+.+++|++++.++++.+ .||      .+++|++
T Consensus       198 v~wspdg~~lasgs~dg~v~iwd~~-~~~~~~~~~~~~~~~~~~~~v~~v~w~~~~~~l~~~~~~dg~~~~~~~v~i~~l  276 (434)
T 2oit_A          198 VCWSPKGKQLAVGKQNGTVVQYLPT-LQEKKVIPCPPFYESDHPVRVLDVLWIGTYVFAIVYAAADGTLETSPDVVMALL  276 (434)
T ss_dssp             EEECTTSSCEEEEETTSCEEEECTT-CCEEEEECCCTTCCTTSCEEEEEEEEEETTEEEEEEEETTCCSSSCCEEEEEEC
T ss_pred             EEEcCCCCEEEEEcCCCcEEEEccC-CcccccccCCcccCCCCceeEEEEEEecCceEEEEEccCCCccCCCCceEEEEe
Confidence            9999999999999999999999998 4443333211    13456899999999988775543 343      3899999


Q ss_pred             CCC
Q 021399          221 RTL  223 (313)
Q Consensus       221 ~~~  223 (313)
                      +..
T Consensus       277 ~~~  279 (434)
T 2oit_A          277 PKK  279 (434)
T ss_dssp             CCT
T ss_pred             ccC
Confidence            864

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=99.86  E-value=2.6e-20  Score=174.57  Aligned_cols=268  Identities=15%  Similarity=0.159  Sum_probs=170.5

Q ss_pred             eeEEEEccCCCEEEEeeCCCCeEEEeCCCCcEE-EEecCCC-----------------CceEEEEECCCCCeEEEeeCCC
Q 021399           13 LTYLKYNKDGDLLFSCAKDHTPTVWFADNGERL-GTYRGHN-----------------GAVWCCDVSRDSMTLITGSADQ   74 (313)
Q Consensus        13 v~~~~fs~~g~~l~s~s~d~~i~iw~~~~~~~~-~~~~~H~-----------------~~V~~~~~~~~~~~l~s~s~D~   74 (313)
                      +..+.|.  |+.+++++.|+ | +||.++++.+ ..+..|.                 ..|.+++|+|| +.++.+ .|+
T Consensus        28 ~~~~~w~--g~~~~~~~~~~-i-~~d~~tg~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~v~~~~~spd-~~~~~~-~~~  101 (706)
T 2z3z_A           28 VVGLQWM--GDNYVFIEGDD-L-VFNKANGKSAQTTRFSAADLNALMPEGCKFQTTDAFPSFRTLDAGR-GLVVLF-TQG  101 (706)
T ss_dssp             CTTCEEE--TTEEEEEETTE-E-EEEC-------CEEEEHHHHHTTC-----------CCCEEEEETTT-TEEEEE-ETT
T ss_pred             CCCCcCc--CCeEEEEeCCc-E-EEECCCCcEeeEEeechhHhhhhccchhccccccccCceeEEECCC-CeEEEE-ECC
Confidence            4557787  77888888888 8 9999999873 4444433                 56999999999 544443 469


Q ss_pred             cEEEEECCCCeEEEEecCCCCeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCC-------
Q 021399           75 TAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQG-------  147 (313)
Q Consensus        75 ~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------  147 (313)
                      ++++||+.+++..........+..+.|+|+++.++...+.      .+.++++... ....+........+..       
T Consensus       102 ~i~~~d~~~~~~~~l~~~~~~~~~~~~SpdG~~la~~~~~------~i~v~~~~~~-~~~~g~~~~~~~~~~~~~~~g~~  174 (706)
T 2z3z_A          102 GLVGFDMLARKVTYLFDTNEETASLDFSPVGDRVAYVRNH------NLYIARGGKL-GEGMSRAIAVTIDGTETLVYGQA  174 (706)
T ss_dssp             EEEEEETTTTEEEEEECCTTCCTTCEECTTSSEEEEEETT------EEEEEECBCT-TSCCCCCEESCSCCBTTEEESSC
T ss_pred             EEEEEECCCCceEEccCCcccccCCcCCCCCCEEEEEECC------eEEEEecCcc-cccCCCcEEeccCCCCCeEcccc
Confidence            9999999998876665555566778899987665554332      2223332210 0000111111111212       


Q ss_pred             -------ceEEEEEccCCCEEEEee---------------------------------CCCeEEEEECCCCceeeecccc
Q 021399          148 -------RINRAVWGPLNRTIISAG---------------------------------EDAIVRIWDTETGKLLKESDKE  187 (313)
Q Consensus       148 -------~i~~~~~~~~~~~i~t~~---------------------------------~d~~i~lwd~~~~~~~~~~~~~  187 (313)
                             .+..+.|+|++++|++++                                 .+..|++||+.+++..... ..
T Consensus       175 ~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~-~~  253 (706)
T 2z3z_A          175 VHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTVYLQ-TG  253 (706)
T ss_dssp             CGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEEECC-CC
T ss_pred             hhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceEeec-cC
Confidence                   247899999999999987                                 4578999999887654322 22


Q ss_pred             cCceeceEEEEECCCCCEEEEeeCCC-----cEEEEECCCCcEEEEEe-c--CC---ceeEEEecc--CCCEEEEccccc
Q 021399          188 TGHKKTITSLAKAADGSHFLTGSLDK-----SAKLWDARTLELIKTYV-T--ER---PVNAVTMSP--LLDHVVLGGGQD  254 (313)
Q Consensus       188 ~~h~~~v~~~~~s~~~~~l~s~s~dg-----~i~iwd~~~~~~~~~~~-~--~~---~~~~~~~~p--~~~~~~~~~~~~  254 (313)
                      ..|...+.+++|+|||+.|++++.|+     .|++||+++++....+. .  ..   .+..++|+|  ++..++++..+.
T Consensus       254 ~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~sp~~dg~~l~~~~~~g  333 (706)
T 2z3z_A          254 EPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEPLHPLTFLPGSNNQFIWQSRRDG  333 (706)
T ss_dssp             SCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCCCSCCEECTTCSSEEEEEECTTS
T ss_pred             CCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeECccCCceeecCCCCEEEEEEccCC
Confidence            24667899999999999999988776     89999999984444432 1  11   246789999  887555443222


Q ss_pred             CceeEeeccCCCceeeeeeehhhhhhhccccccccceeE-EEECCCCCeeEEEE
Q 021399          255 ASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINA-LAFNPDGKRYGFLL  307 (313)
Q Consensus       255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~-~~fspdgk~~~~~~  307 (313)
                      ...++..            +. .+..+..+..|...|.. ++|+|||+.++|..
T Consensus       334 ~~~l~~~------------~~-~~~~~~~l~~~~~~v~~~~~~spdg~~l~~~~  374 (706)
T 2z3z_A          334 WNHLYLY------------DT-TGRLIRQVTKGEWEVTNFAGFDPKGTRLYFES  374 (706)
T ss_dssp             SCEEEEE------------ET-TSCEEEECCCSSSCEEEEEEECTTSSEEEEEE
T ss_pred             ccEEEEE------------EC-CCCEEEecCCCCeEEEeeeEEcCCCCEEEEEe
Confidence            2222222            21 22333445567777876 89999999988764

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=99.86  E-value=9.8e-20  Score=151.61  Aligned_cols=211  Identities=9%  Similarity=-0.020  Sum_probs=148.3

Q ss_pred             EeeCCCCeEEEeCCCCcEEEEecCCCCceEEEEECCCCCeEEEeeCCCcEEEEECCC-CeEEEEecCCCCeeEEEeecCC
Q 021399           27 SCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVET-GAQLFTFNFDSPARSVDFAVGD  105 (313)
Q Consensus        27 s~s~d~~i~iw~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~v~vWd~~~-~~~~~~~~~~~~~~~~~~~~~~  105 (313)
                      +++.|+.|++||..+++.. .+..|...|.+++|+|+++++++++ ++.|++||+.+ ++.....               
T Consensus        17 ~~~~~~~i~~~d~~~~~~~-~~~~~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~~~~~---------------   79 (297)
T 2ojh_A           17 GGSMRSSIEIFNIRTRKMR-VVWQTPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSPEKVD---------------   79 (297)
T ss_dssp             -CCCCEEEEEEETTTTEEE-EEEEESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSCEECC---------------
T ss_pred             CCCcceeEEEEeCCCCcee-eeccCCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCceEec---------------
Confidence            3567899999999988765 5666899999999999999998876 88999999987 5432110               


Q ss_pred             eEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCC-CCceEEEEEccCCCEEEEee--CCC--eEEEEECCCCce
Q 021399          106 KLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGP-QGRINRAVWGPLNRTIISAG--EDA--IVRIWDTETGKL  180 (313)
Q Consensus       106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~~~~~~~i~t~~--~d~--~i~lwd~~~~~~  180 (313)
                                                           ..+ ...+..+.|+|+++++++++  .++  .|.+|+...+..
T Consensus        80 -------------------------------------~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~~  122 (297)
T 2ojh_A           80 -------------------------------------TGFATICNNDHGISPDGALYAISDKVEFGKSAIYLLPSTGGTP  122 (297)
T ss_dssp             -------------------------------------CTTCCCBCSCCEECTTSSEEEEEECTTTSSCEEEEEETTCCCC
T ss_pred             -------------------------------------cccccccccceEECCCCCEEEEEEeCCCCcceEEEEECCCCce
Confidence                                                 011 23566788999999999988  333  455555555442


Q ss_pred             eeecccccCceeceEEEEECCCCCEEE-EeeCCCcEEEEEC--CCCcEEEEEecCCceeEEEeccCCCEEEEcccccCce
Q 021399          181 LKESDKETGHKKTITSLAKAADGSHFL-TGSLDKSAKLWDA--RTLELIKTYVTERPVNAVTMSPLLDHVVLGGGQDASA  257 (313)
Q Consensus       181 ~~~~~~~~~h~~~v~~~~~s~~~~~l~-s~s~dg~i~iwd~--~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~  257 (313)
                       ..+.    +...+..++|+|+++.|+ +++.|+.+++|++  .+++..........+..++|+|++..+++++..+.. 
T Consensus       123 -~~~~----~~~~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~-  196 (297)
T 2ojh_A          123 -RLMT----KNLPSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSGVETRLTHGEGRNDGPDYSPDGRWIYFNSSRTGQ-  196 (297)
T ss_dssp             -EECC----SSSSEEEEEECTTSSEEEEEEEETTEEEEEEEETTTCCEEECCCSSSCEEEEEECTTSSEEEEEECTTSS-
T ss_pred             -EEee----cCCCccceEECCCCCEEEEEECCCCceEEEEEECCCCcceEcccCCCccccceECCCCCEEEEEecCCCC-
Confidence             2222    223488899999999887 7888999999985  445543333345678999999999988776543321 


Q ss_pred             eEeeccCCCceeeeeeehh-hhhhhccccccccceeEEEECCCCCeeEEEEEE
Q 021399          258 VTTTDHRAGKFEAKFFDKI-LQEEIGGVKGHFGPINALAFNPDGKRYGFLLLQ  309 (313)
Q Consensus       258 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~h~~~V~~~~fspdgk~~~~~~~~  309 (313)
                                  .++|+.. ....+..+..|...+..++|+|||+++++....
T Consensus       197 ------------~~i~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~  237 (297)
T 2ojh_A          197 ------------MQIWRVRVDGSSVERITDSAYGDWFPHPSPSGDKVVFVSYD  237 (297)
T ss_dssp             ------------CEEEEEETTSSCEEECCCCSEEEEEEEECTTSSEEEEEEEE
T ss_pred             ------------ccEEEECCCCCCcEEEecCCcccCCeEECCCCCEEEEEEcC
Confidence                        1223221 222334556678899999999999999987653

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=99.85  E-value=3.6e-18  Score=146.27  Aligned_cols=227  Identities=11%  Similarity=0.023  Sum_probs=165.7

Q ss_pred             cceeEEEEccCCCEEEE-eeCCCCeEEEeCCCCcEEEEecCCCCc---------eEEEEECCCCCeEEEee--CCCcEEE
Q 021399           11 RPLTYLKYNKDGDLLFS-CAKDHTPTVWFADNGERLGTYRGHNGA---------VWCCDVSRDSMTLITGS--ADQTAKL   78 (313)
Q Consensus        11 ~~v~~~~fs~~g~~l~s-~s~d~~i~iw~~~~~~~~~~~~~H~~~---------V~~~~~~~~~~~l~s~s--~D~~v~v   78 (313)
                      ..+..++|+|+|++++. ...++.|.+||.++++.+..+..+...         +.+++|+|+++.++.++  .++.|.+
T Consensus        89 ~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~  168 (353)
T 3vgz_A           89 LKPFGATINNTTQTLWFGNTVNSAVTAIDAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWV  168 (353)
T ss_dssp             SCCCSEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEE
T ss_pred             CCcceEEECCCCCEEEEEecCCCEEEEEeCCCCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEE
Confidence            34678999999995554 455799999999999998888765432         78899999998776665  5889999


Q ss_pred             EECCCCeEEEEec-CCCCeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEec----CCCCceEEEE
Q 021399           79 WNVETGAQLFTFN-FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILK----GPQGRINRAV  153 (313)
Q Consensus        79 Wd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~i~~~~  153 (313)
                      ||+.+++.+..+. .......+.+++++..+++....     ..+..++.      ..+.....+.    ++...+..+.
T Consensus       169 ~d~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~-----~~i~~~d~------~~~~~~~~~~~~~~~~~~~~~~~~  237 (353)
T 3vgz_A          169 VDGGNIKLKTAIQNTGKMSTGLALDSEGKRLYTTNAD-----GELITIDT------ADNKILSRKKLLDDGKEHFFINIS  237 (353)
T ss_dssp             EETTTTEEEEEECCCCTTCCCCEEETTTTEEEEECTT-----SEEEEEET------TTTEEEEEEECCCSSSCCCEEEEE
T ss_pred             EcCCCCceEEEecCCCCccceEEECCCCCEEEEEcCC-----CeEEEEEC------CCCeEEEEEEcCCCCCCcccceEE
Confidence            9999998887776 44446677888876655444321     11111111      1122232222    2444577899


Q ss_pred             EccCCCEEEEee-CCCeEEEEECCCCceeeecccccCceeceEEEEECCCCCEEEEee-CCCcEEEEECCCCcEEEEEec
Q 021399          154 WGPLNRTIISAG-EDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGS-LDKSAKLWDARTLELIKTYVT  231 (313)
Q Consensus       154 ~~~~~~~i~t~~-~d~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s-~dg~i~iwd~~~~~~~~~~~~  231 (313)
                      |+|++++++.++ .++.|.+||..+++.+..+..  +.   ...++|+|+|++++.++ .++.|.+||+++++.+..+..
T Consensus       238 ~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~--~~---~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~  312 (353)
T 3vgz_A          238 LDTARQRAFITDSKAAEVLVVDTRNGNILAKVAA--PE---SLAVLFNPARNEAYVTHRQAGKVSVIDAKSYKVVKTFDT  312 (353)
T ss_dssp             EETTTTEEEEEESSSSEEEEEETTTCCEEEEEEC--SS---CCCEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEEEC
T ss_pred             ECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEc--CC---CceEEECCCCCEEEEEECCCCeEEEEECCCCeEEEEEec
Confidence            999999776665 459999999998887766542  11   25689999999665555 689999999999999888877


Q ss_pred             CCceeEEEeccCCCEEEEcccc
Q 021399          232 ERPVNAVTMSPLLDHVVLGGGQ  253 (313)
Q Consensus       232 ~~~~~~~~~~p~~~~~~~~~~~  253 (313)
                      ......++|+|+++.++++...
T Consensus       313 ~~~~~~~~~s~dg~~l~v~~~~  334 (353)
T 3vgz_A          313 PTHPNSLALSADGKTLYVSVKQ  334 (353)
T ss_dssp             CSEEEEEEECTTSCEEEEEEEC
T ss_pred             CCCCCeEEEcCCCCEEEEEEcc
Confidence            7788999999999988887543

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=99.85  E-value=3e-20  Score=174.55  Aligned_cols=270  Identities=11%  Similarity=0.022  Sum_probs=174.6

Q ss_pred             eEEEEccCCCEEEEeeCCCCeEEEeCCCCcEEEEecCCCC---ceEEEEECCCCCeEEEeeC---------CCcEEEEEC
Q 021399           14 TYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNG---AVWCCDVSRDSMTLITGSA---------DQTAKLWNV   81 (313)
Q Consensus        14 ~~~~fs~~g~~l~s~s~d~~i~iw~~~~~~~~~~~~~H~~---~V~~~~~~~~~~~l~s~s~---------D~~v~vWd~   81 (313)
                      ..++|+|||+++++ +.|+.|++||.++++....+.+|..   .|.+++|||||+.++.++.         |++|++||+
T Consensus        19 ~~~~~s~dg~~~~~-~~d~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~   97 (719)
T 1z68_A           19 FFPNWISGQEYLHQ-SADNNIVLYNIETGQSYTILSNRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDL   97 (719)
T ss_dssp             CCCEESSSSEEEEE-CTTSCEEEEESSSCCEEEEECHHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEET
T ss_pred             CccEECCCCeEEEE-cCCCCEEEEEcCCCcEEEEEccccccccceeeEEECCCCCeEEEEecCceeEEeecceEEEEEEC
Confidence            47899999966554 4699999999999998777766644   4899999999999988876         799999999


Q ss_pred             CCCeEEEEecCCCCeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEE---------EecCCCC-----
Q 021399           82 ETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVL---------ILKGPQG-----  147 (313)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~-----  147 (313)
                      .+++.+........+..+.|+|+++.++...+.      .+.++++..      +....         .+.++..     
T Consensus        98 ~~g~~~~~~~l~~~~~~~~~SPDG~~la~~~~~------~i~~~~~~~------g~~~~l~~~~~~~~v~~g~~~~v~~e  165 (719)
T 1z68_A           98 SNGEFVRGNELPRPIQYLCWSPVGSKLAYVYQN------NIYLKQRPG------DPPFQITFNGRENKIFNGIPDWVYEE  165 (719)
T ss_dssp             TTTEECCSSCCCSSBCCEEECSSTTCEEEEETT------EEEEESSTT------SCCEECCCCCBTTTEEESSCCHHHHH
T ss_pred             CCCccccceecCcccccceECCCCCEEEEEECC------eEEEEeCCC------CCcEEEecCCCcCCeEcccccceeee
Confidence            998762111223456778899987665554332      122222110      11111         1112211     


Q ss_pred             ----ceEEEEEccCCCEEEEeeCCC----------------------------------eEEEEECCCCcee--eecc--
Q 021399          148 ----RINRAVWGPLNRTIISAGEDA----------------------------------IVRIWDTETGKLL--KESD--  185 (313)
Q Consensus       148 ----~i~~~~~~~~~~~i~t~~~d~----------------------------------~i~lwd~~~~~~~--~~~~--  185 (313)
                          ....+.|+|+|++|++++.|.                                  .|++||+.+++..  ..+.  
T Consensus       166 e~~~~~~~~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~  245 (719)
T 1z68_A          166 EMLATKYALWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVPVP  245 (719)
T ss_dssp             HTTCSSCCEEECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCEECCCC
T ss_pred             ecccCcccEEECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCccceeEccCC
Confidence                124799999999999987652                                  7899999887642  1111  


Q ss_pred             -cccCceeceEEEEECCCCCEEEEeeCC----CcEEEEE----CCCCcEEEEEe-----cCCcee-----EEEeccCCCE
Q 021399          186 -KETGHKKTITSLAKAADGSHFLTGSLD----KSAKLWD----ARTLELIKTYV-----TERPVN-----AVTMSPLLDH  246 (313)
Q Consensus       186 -~~~~h~~~v~~~~~s~~~~~l~s~s~d----g~i~iwd----~~~~~~~~~~~-----~~~~~~-----~~~~~p~~~~  246 (313)
                       ...+|...+..++|+||+..+++....    ..|.+||    ++++++...+.     +...+.     .++|+|++..
T Consensus       246 ~~~~~~~~~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~  325 (719)
T 1z68_A          246 AMIASSDYYFSWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQTWDCPKTQEHIEESRTGWAGGFFVSTPVFSYDAIS  325 (719)
T ss_dssp             HHHHTSCEEEEEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSSSEECCGGGEEEEECSSSCSSSSSCCCCEECTTSSC
T ss_pred             ccCCCCcceEEEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCCCCceEEEEecccccCCceEccccCCccEECCCCCe
Confidence             113577889999999998877774432    2488899    88776544331     223344     7899999987


Q ss_pred             EEEcccccCceeEeeccCCCceeeeeeehhhhhhhccccccccceeEEEECCCCCeeEEEEE
Q 021399          247 VVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKRYGFLLL  308 (313)
Q Consensus       247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~fspdgk~~~~~~~  308 (313)
                      +++..+...          +...+..||...++ ...+..+...|..+.++ ||+.+.|...
T Consensus       326 l~~~~~~~~----------g~~~l~~~~~~~~~-~~~lt~~~~~v~~~~~~-d~~~i~~~~~  375 (719)
T 1z68_A          326 YYKIFSDKD----------GYKHIHYIKDTVEN-AIQITSGKWEAINIFRV-TQDSLFYSSN  375 (719)
T ss_dssp             EEEEEECTT----------SCEEEEEESSCSTT-CEECSCSSSCEEEEEEE-CSSEEEEEES
T ss_pred             EEEEEEccC----------CceEEEEEECCCCc-eEecccCceEEEEEEEE-eCCEEEEEEe
Confidence            665322111          11233444443322 22344455667888888 9998888763

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=99.84  E-value=4.5e-19  Score=154.10  Aligned_cols=291  Identities=13%  Similarity=0.028  Sum_probs=171.9

Q ss_pred             ccccccccceeE-----EEEccCCCEEEEeeC-CCC--eEEEeCCCCcEEEEecCCCCceEEEEECCCCCeEEEeeCCCc
Q 021399            4 ILMKGHERPLTY-----LKYNKDGDLLFSCAK-DHT--PTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQT   75 (313)
Q Consensus         4 ~~l~~h~~~v~~-----~~fs~~g~~l~s~s~-d~~--i~iw~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~   75 (313)
                      +.|..|......     .+|||||++|+.++. ++.  |.+||.++++......+|...+..+.|+||++.|+.++.++.
T Consensus        24 ~~lt~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~spdg~~l~~~~~~~~  103 (388)
T 3pe7_A           24 TRLTPPDVTCHRNYFYQKCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQLTEGRGDNTFGGFLSPDDDALFYVKDGRN  103 (388)
T ss_dssp             EECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEECCCSSCBCSSSCEECTTSSEEEEEETTTE
T ss_pred             EEecCCcccccchhhcCccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEEeeeCCCCCccceEEcCCCCEEEEEeCCCe
Confidence            345566655555     889999999999987 674  777899888887777777777667889999999999999999


Q ss_pred             EEEEECCCCeEEEEecCCCC-eeEE--EeecCCeEEEEECC-Cc-e-------------eccccceeeeeeeCCCCCCCc
Q 021399           76 AKLWNVETGAQLFTFNFDSP-ARSV--DFAVGDKLAVITTD-PF-M-------------ELNSAIHVKRIARDPADQGGE  137 (313)
Q Consensus        76 v~vWd~~~~~~~~~~~~~~~-~~~~--~~~~~~~~~~~~~~-~~-~-------------~~~~~~~~~~~~~~~~~~~~~  137 (313)
                      +++||+.+++.......... ....  .+.+++..++.... .. .             .......++.+  +.  ..++
T Consensus       104 l~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--d~--~~g~  179 (388)
T 3pe7_A          104 LMRVDLATLEENVVYQVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRV--DL--KTGE  179 (388)
T ss_dssp             EEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEE--ET--TTCC
T ss_pred             EEEEECCCCcceeeeechhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceEEEE--EC--CCCc
Confidence            99999999887655544332 2122  23555554443210 00 0             00000111111  11  1122


Q ss_pred             eEEEecCCCCceEEEEEcc-CCCEEEEeeCC------CeEEEEECCCCceeeecccccCceeceEEEEECCCCCEEEEee
Q 021399          138 SVLILKGPQGRINRAVWGP-LNRTIISAGED------AIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGS  210 (313)
Q Consensus       138 ~~~~~~~~~~~i~~~~~~~-~~~~i~t~~~d------~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s  210 (313)
                       ...+..+...+..+.|+| +++.|+.+..+      ..|.++|...+.. ..+... .....+...+|+|||+.|+..+
T Consensus       180 -~~~l~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~-~~l~~~-~~~~~~~~~~~spdg~~l~~~~  256 (388)
T 3pe7_A          180 -STVILQENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNM-RKVKTH-AEGESCTHEFWVPDGSALVYVS  256 (388)
T ss_dssp             -EEEEEEESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCC-EESCCC-CTTEEEEEEEECTTSSCEEEEE
T ss_pred             -eEEeecCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCce-EEeeeC-CCCcccccceECCCCCEEEEEe
Confidence             222333455678899999 99988877653      3788888765543 222211 1113577889999999876654


Q ss_pred             CC-C----cEEEEECCCCcEEEEEecCCc------eeEEEeccCCCEEEEcccccCceeEeeccCCCceeeeeeehhhhh
Q 021399          211 LD-K----SAKLWDARTLELIKTYVTERP------VNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQE  279 (313)
Q Consensus       211 ~d-g----~i~iwd~~~~~~~~~~~~~~~------~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  279 (313)
                      .+ +    .|.+||+++++..........      ....+|+|++..++++.......     ...+...+.+||..+++
T Consensus       257 ~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~-----~~~~~~~i~~~d~~~~~  331 (388)
T 3pe7_A          257 YLKGSPDRFIYSADPETLENRQLTSMPACSHLMSNYDGSLMVGDGSDAPVDVQDDSGY-----KIENDPFLYVFNMKNGT  331 (388)
T ss_dssp             EETTCCCEEEEEECTTTCCEEEEEEECCEEEEEECTTSSEEEEEECCC-----------------CCCCEEEEEETTTTE
T ss_pred             cCCCCCcceEEEEecCCCceEEEEcCCCceeeeecCCCCeEccCCCcceeEeeecccc-----ccCCCCEEEEEeccCCc
Confidence            32 2    399999999875332222211      12236889888776543210000     00011233444443322


Q ss_pred             hhcccccccc-----------ceeEEEECCCCCeeEEEE
Q 021399          280 EIGGVKGHFG-----------PINALAFNPDGKRYGFLL  307 (313)
Q Consensus       280 ~~~~~~~h~~-----------~V~~~~fspdgk~~~~~~  307 (313)
                      . ..+..|..           .+.+++|+|||+.++|..
T Consensus       332 ~-~~l~~~~~~~~~~~~~~~~~~~~~~~spDg~~l~~~s  369 (388)
T 3pe7_A          332 Q-HRVARHDTSWKVFEGDRQVTHPHPSFTPDDKQILFTS  369 (388)
T ss_dssp             E-EEEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEE
T ss_pred             e-EEeccccCcccccccccccCCCCccCCCCCCEEEEEe
Confidence            1 22333444           578899999999998865

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=99.84  E-value=1.5e-18  Score=147.55  Aligned_cols=230  Identities=13%  Similarity=0.100  Sum_probs=157.6

Q ss_pred             CEEEEeeCCCCeEEEeCCCCcEEEEecCCC-C-ceEEEEECCCCCeE-EEeeCCCcEEEEECCCCeEEEEecCCC-----
Q 021399           23 DLLFSCAKDHTPTVWFADNGERLGTYRGHN-G-AVWCCDVSRDSMTL-ITGSADQTAKLWNVETGAQLFTFNFDS-----   94 (313)
Q Consensus        23 ~~l~s~s~d~~i~iw~~~~~~~~~~~~~H~-~-~V~~~~~~~~~~~l-~s~s~D~~v~vWd~~~~~~~~~~~~~~-----   94 (313)
                      ++|++++.++.|++||..+++.+..+.... . .+..++|+|+++.+ ++++.++.|.+||+.+++.+..+....     
T Consensus         2 ~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~   81 (337)
T 1pby_B            2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERV   81 (337)
T ss_dssp             EEEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEE
T ss_pred             cEEEEcCCCCeEEEEECCCCcEEEEEEcCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCccccc
Confidence            478999999999999999999888876432 2 47889999999754 666678999999999988776665433     


Q ss_pred             -CeeEEEeecCCeEEEEECCCc------ee-ccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEccCCCEEEEeeC
Q 021399           95 -PARSVDFAVGDKLAVITTDPF------ME-LNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGE  166 (313)
Q Consensus        95 -~~~~~~~~~~~~~~~~~~~~~------~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~t~~~  166 (313)
                       .+..+.++++++.+++.....      .. ....+.++++      ..+..+..+.. ...+..+.|+|++++++++  
T Consensus        82 ~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~------~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~--  152 (337)
T 1pby_B           82 KSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDA------ETLSRRKAFEA-PRQITMLAWARDGSKLYGL--  152 (337)
T ss_dssp             ECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEET------TTTEEEEEEEC-CSSCCCEEECTTSSCEEEE--
T ss_pred             ccccceEECCCCCEEEEEecccccccccccccCceEEEEEC------CCCcEEEEEeC-CCCcceeEECCCCCEEEEe--
Confidence             456778888775544432100      00 0111222221      12233333332 3346678899999988877  


Q ss_pred             CCeEEEEECCCCceeeeccccc----------------------------------------------------------
Q 021399          167 DAIVRIWDTETGKLLKESDKET----------------------------------------------------------  188 (313)
Q Consensus       167 d~~i~lwd~~~~~~~~~~~~~~----------------------------------------------------------  188 (313)
                      ++.|++||+.+++....+....                                                          
T Consensus       153 ~~~i~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~  232 (337)
T 1pby_B          153 GRDLHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMA  232 (337)
T ss_dssp             SSSEEEEETTTTEEEEEECSTTTTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEE
T ss_pred             CCeEEEEECCCCcEeeeeeccccCCCceeCCCccEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCCCCce
Confidence            5789999998876654322110                                                          


Q ss_pred             -----CceeceEEEEECCCCCEEEEeeCCCcEEEEECCCCcEEEEEecCCceeEEEeccCCCEEEEcccccCceeEeecc
Q 021399          189 -----GHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTERPVNAVTMSPLLDHVVLGGGQDASAVTTTDH  263 (313)
Q Consensus       189 -----~h~~~v~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~  263 (313)
                           .+...+.+++|+|+|++++++  ++.|++||+++++.+..+.....+..++|+|+++.+++++.  ...+.++|.
T Consensus       233 ~~~~~~~~~~~~~~~~s~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~--~~~i~v~d~  308 (337)
T 1pby_B          233 MREVRIMDVFYFSTAVNPAKTRAFGA--YNVLESFDLEKNASIKRVPLPHSYYSVNVSTDGSTVWLGGA--LGDLAAYDA  308 (337)
T ss_dssp             EEEEEECSSCEEEEEECTTSSEEEEE--ESEEEEEETTTTEEEEEEECSSCCCEEEECTTSCEEEEESB--SSEEEEEET
T ss_pred             EeecCCCCCceeeEEECCCCCEEEEe--CCeEEEEECCCCcCcceecCCCceeeEEECCCCCEEEEEcC--CCcEEEEEC
Confidence                 011234568999999999888  79999999999998888776677889999999998887643  334545554


Q ss_pred             CC
Q 021399          264 RA  265 (313)
Q Consensus       264 ~~  265 (313)
                      ..
T Consensus       309 ~~  310 (337)
T 1pby_B          309 ET  310 (337)
T ss_dssp             TT
T ss_pred             cC
Confidence            43

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=99.84  E-value=3.9e-18  Score=146.96  Aligned_cols=239  Identities=11%  Similarity=0.117  Sum_probs=152.6

Q ss_pred             cccceeEEEEccCCCEEEEeeCC----CCeEEEeCCC--Cc--EEEEecCCCCceEEEEECCCCCeEEEee-CCCcEEEE
Q 021399            9 HERPLTYLKYNKDGDLLFSCAKD----HTPTVWFADN--GE--RLGTYRGHNGAVWCCDVSRDSMTLITGS-ADQTAKLW   79 (313)
Q Consensus         9 h~~~v~~~~fs~~g~~l~s~s~d----~~i~iw~~~~--~~--~~~~~~~H~~~V~~~~~~~~~~~l~s~s-~D~~v~vW   79 (313)
                      |...+..++|+|||++|++++.+    +.|.+|+++.  ++  .+.....+......+++  +++.+++++ .++.+.+|
T Consensus        48 ~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~--dg~~l~~~~~~~~~v~~~  125 (361)
T 3scy_A           48 EVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLLNTQKTMGADPCYLTT--NGKNIVTANYSGGSITVF  125 (361)
T ss_dssp             ECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEEEEEEEECSSSCEEEEEE--CSSEEEEEETTTTEEEEE
T ss_pred             cCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEEEeeEeccCCCCcEEEEE--CCCEEEEEECCCCEEEEE
Confidence            56677889999999999999986    7999998765  43  34445555666777777  777666665 68999999


Q ss_pred             ECCCCeEE----EEecC-----------CCCeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCC--C-Cce---
Q 021399           80 NVETGAQL----FTFNF-----------DSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQ--G-GES---  138 (313)
Q Consensus        80 d~~~~~~~----~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-~~~---  138 (313)
                      ++.....+    .....           ......+.|+|+++.+++....    ...+.++++.......  . ...   
T Consensus       126 ~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~----~~~v~v~~~~~~~~~~~~~~l~~~~~  201 (361)
T 3scy_A          126 PIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLADDLG----TDQIHKFNINPNANADNKEKFLTKGT  201 (361)
T ss_dssp             EBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEEEETT----TTEEEEEEECTTCCTTTCCCCEEEEE
T ss_pred             EeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEEEEEeCC----CCEEEEEEEcCCCCcccccceeeccc
Confidence            99753321    11111           1123668899987754443211    1112222222110000  0 000   


Q ss_pred             -EEEecCCCCceEEEEEccCCCEEEEee-CCCeEEEEECCCCce--eeecccccCceeceEEEEECCCCCEEEEeeCC--
Q 021399          139 -VLILKGPQGRINRAVWGPLNRTIISAG-EDAIVRIWDTETGKL--LKESDKETGHKKTITSLAKAADGSHFLTGSLD--  212 (313)
Q Consensus       139 -~~~~~~~~~~i~~~~~~~~~~~i~t~~-~d~~i~lwd~~~~~~--~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d--  212 (313)
                       ......+......++|+|+++++++++ .++.|.+||+.+++.  +..+.....+......++|+|||++|+++..+  
T Consensus       202 ~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~  281 (361)
T 3scy_A          202 PEAFKVAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGMLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLKA  281 (361)
T ss_dssp             EEEEECCTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETTEEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEECSSS
T ss_pred             ccceecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCceEEeEEEecCCCCCCCcccEEECCCCCEEEEECCCCC
Confidence             111222344567899999999877766 689999999886643  22222223344557899999999998776654  


Q ss_pred             CcEEEEECC--CCc--EEEEEecCCceeEEEeccCCCEEEEcccc
Q 021399          213 KSAKLWDAR--TLE--LIKTYVTERPVNAVTMSPLLDHVVLGGGQ  253 (313)
Q Consensus       213 g~i~iwd~~--~~~--~~~~~~~~~~~~~~~~~p~~~~~~~~~~~  253 (313)
                      +.|.+|+++  +++  .+..+.....+..++|+|+++.++++...
T Consensus       282 ~~i~v~~~~~~~g~~~~~~~~~~g~~~~~~~~spdg~~l~~~~~~  326 (361)
T 3scy_A          282 DGVAIFKVDETNGTLTKVGYQLTGIHPRNFIITPNGKYLLVACRD  326 (361)
T ss_dssp             CEEEEEEECTTTCCEEEEEEEECSSCCCEEEECTTSCEEEEEETT
T ss_pred             CEEEEEEEcCCCCcEEEeeEecCCCCCceEEECCCCCEEEEEECC
Confidence            899999985  444  44444444467899999999988887543

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=99.84  E-value=2.3e-19  Score=169.06  Aligned_cols=229  Identities=10%  Similarity=0.058  Sum_probs=157.4

Q ss_pred             cceeEEEEccCCCEEEEeeCCCCeEEEeCCCCcEEEEecCCCCce-----EEEEECCCCCeEEEeeCC---------CcE
Q 021399           11 RPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAV-----WCCDVSRDSMTLITGSAD---------QTA   76 (313)
Q Consensus        11 ~~v~~~~fs~~g~~l~s~s~d~~i~iw~~~~~~~~~~~~~H~~~V-----~~~~~~~~~~~l~s~s~D---------~~v   76 (313)
                      .....++|+|||++|+++  |+.|++||..+++....+.+|....     ..++|||||+.++.++.+         +.+
T Consensus        17 ~~~~~~~w~~dg~~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~   94 (740)
T 4a5s_A           17 LKLYSLRWISDHEYLYKQ--ENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASY   94 (740)
T ss_dssp             CCCCCEEECSSSEEEEEE--TTEEEEEETTTCCEEEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEE
T ss_pred             ccccccEECCCCcEEEEc--CCcEEEEECCCCceEEEEechhhhhhcccccceEECCCCCEEEEEECCeeeEEEccceEE
Confidence            346689999999999986  9999999999999888888886532     347889999999988876         455


Q ss_pred             EEEECCCCeEEEEecCCCCeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEcc
Q 021399           77 KLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGP  156 (313)
Q Consensus        77 ~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~  156 (313)
                      .+||+.+++...                                                     +..+.+.+..+.|+|
T Consensus        95 ~~~d~~~~~~~~-----------------------------------------------------l~~~~~~~~~~~~SP  121 (740)
T 4a5s_A           95 DIYDLNKRQLIT-----------------------------------------------------EERIPNNTQWVTWSP  121 (740)
T ss_dssp             EEEETTTTEECC-----------------------------------------------------SSCCCTTEEEEEECS
T ss_pred             EEEECCCCcEEE-----------------------------------------------------cccCCCcceeeEECC
Confidence            689988765321                                                     112334677889999


Q ss_pred             CCCEEEEeeCCCeEEEEECCCCceeeecccccCceece-----------------EEEEECCCCCEEEEeeCCC------
Q 021399          157 LNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTI-----------------TSLAKAADGSHFLTGSLDK------  213 (313)
Q Consensus       157 ~~~~i~t~~~d~~i~lwd~~~~~~~~~~~~~~~h~~~v-----------------~~~~~s~~~~~l~s~s~dg------  213 (313)
                      +|+.|+.+. ++.|++||..++...+ +.. .++...+                 .+++|||||+.||.++.|.      
T Consensus       122 dG~~la~~~-~~~i~~~~~~~~~~~~-lt~-~g~~~~~~~g~~~~v~~ee~~~~~~~~~wSpDg~~la~~~~d~~~v~~~  198 (740)
T 4a5s_A          122 VGHKLAYVW-NNDIYVKIEPNLPSYR-ITW-TGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLI  198 (740)
T ss_dssp             STTCEEEEE-TTEEEEESSTTSCCEE-CCS-CCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEECTTCCEE
T ss_pred             CCCEEEEEE-CCeEEEEECCCCceEE-EcC-CCCccceecCcccccccchhcCCCcceEECCCCCEEEEEEEcccCCceE
Confidence            999999885 6899999998876543 211 1222222                 3589999999999886432      


Q ss_pred             ------------------------------cEEEEECCC---Cc--EEEEEe-------cCCceeEEEeccCCCEEEEcc
Q 021399          214 ------------------------------SAKLWDART---LE--LIKTYV-------TERPVNAVTMSPLLDHVVLGG  251 (313)
Q Consensus       214 ------------------------------~i~iwd~~~---~~--~~~~~~-------~~~~~~~~~~~p~~~~~~~~~  251 (313)
                                                    +|++||+++   ++  ....+.       +...+..++|+|++..++...
T Consensus       199 ~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~wspdg~~~~~~~  278 (740)
T 4a5s_A          199 EYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWATQERISLQWL  278 (740)
T ss_dssp             EEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCSSSCCCEEEECCCHHHHTSCEEEEEEEEEETTEEEEEEE
T ss_pred             EEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCCCCCcceEEEecCCccCCCCCeEEEEEEEeCCCeEEEEEe
Confidence                                          478899988   73  222332       233477899999987444321


Q ss_pred             cccCceeEeeccCCCceeeeeeehhhhh----h--hccc--ccccccee-----EEEECCCCCeeEEEE
Q 021399          252 GQDASAVTTTDHRAGKFEAKFFDKILQE----E--IGGV--KGHFGPIN-----ALAFNPDGKRYGFLL  307 (313)
Q Consensus       252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~--~~~~--~~h~~~V~-----~~~fspdgk~~~~~~  307 (313)
                      .          .......+.+||..+++    +  +..+  .+|.+.|.     ..+|||||+.++|..
T Consensus       279 ~----------r~~~~~~i~~~d~~tg~~~~~~~~~~~l~~~~~~~~v~~~~~~~p~fspDG~~l~~~~  337 (740)
T 4a5s_A          279 R----------RIQNYSVMDICDYDESSGRWNCLVARQHIEMSTTGWVGRFRPSEPHFTLDGNSFYKII  337 (740)
T ss_dssp             E----------SSTTEEEEEEEEEETTTTEEEECGGGCEEEECSSSCSSSSSCCCCEECTTSSEEEEEE
T ss_pred             C----------CCCCEEEEEEEECCCCccccceeEEEEeeeccCCceEccCcCCCceEcCCCCEEEEEE
Confidence            1          11122345666665554    1  2222  35666665     789999999998443

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=99.83  E-value=2.4e-18  Score=146.97  Aligned_cols=238  Identities=13%  Similarity=0.047  Sum_probs=160.9

Q ss_pred             EEEEccCCCEEEEeeCCCCeEEEeCCCCcEEEEecCCC-CceEEEEECCCCCeE-EEeeCCCcEEEEECCCCeEEEEecC
Q 021399           15 YLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHN-GAVWCCDVSRDSMTL-ITGSADQTAKLWNVETGAQLFTFNF   92 (313)
Q Consensus        15 ~~~fs~~g~~l~s~s~d~~i~iw~~~~~~~~~~~~~H~-~~V~~~~~~~~~~~l-~s~s~D~~v~vWd~~~~~~~~~~~~   92 (313)
                      .+++++++.++++++.++.|++||.++++.+.++..+. ..+..++|+|+++.+ +++..++.|.+||+.+++.+.....
T Consensus         4 g~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~~~~~   83 (349)
T 1jmx_B            4 GPALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANL   83 (349)
T ss_dssp             CCCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEES
T ss_pred             cccccCCCEEEEEeCCCCeEEEEECCCCcEEEEEecCCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEEEEEEc
Confidence            45678899999999999999999999999888887554 257789999999854 5666789999999999887766654


Q ss_pred             CC-------CeeEEEeecCCeEEEEECCC-------ceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEccCC
Q 021399           93 DS-------PARSVDFAVGDKLAVITTDP-------FMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLN  158 (313)
Q Consensus        93 ~~-------~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~  158 (313)
                      ..       .+..+.++++++.+++....       .......+..+++.....   ...+..... ...+..+.|+|++
T Consensus        84 ~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~---~~~~~~~~~-~~~~~~~~~s~dg  159 (349)
T 1jmx_B           84 SSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLE---AKPVRTFPM-PRQVYLMRAADDG  159 (349)
T ss_dssp             CCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGG---BCCSEEEEC-CSSCCCEEECTTS
T ss_pred             ccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccc---cceeeeccC-CCcccceeECCCC
Confidence            32       25677888877655544311       000011222222221100   011112222 2357788899999


Q ss_pred             CEEEEeeCCCeEEEEECCCCceeeeccccc-C------------------------------------------------
Q 021399          159 RTIISAGEDAIVRIWDTETGKLLKESDKET-G------------------------------------------------  189 (313)
Q Consensus       159 ~~i~t~~~d~~i~lwd~~~~~~~~~~~~~~-~------------------------------------------------  189 (313)
                      + ++.++.  .|++||+.+++....+.... +                                                
T Consensus       160 ~-l~~~~~--~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~  236 (349)
T 1jmx_B          160 S-LYVAGP--DIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYL  236 (349)
T ss_dssp             C-EEEESS--SEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEE
T ss_pred             c-EEEccC--cEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCccccccceeEE
Confidence            9 555544  39999998887655432110 0                                                


Q ss_pred             ----------------ceeceEEEEECC-CCCEEEEeeCCCcEEEEECCCCcEEEEEecCCceeEEEeccCCCEEEEccc
Q 021399          190 ----------------HKKTITSLAKAA-DGSHFLTGSLDKSAKLWDARTLELIKTYVTERPVNAVTMSPLLDHVVLGGG  252 (313)
Q Consensus       190 ----------------h~~~v~~~~~s~-~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~  252 (313)
                                      +...+..++++| ++++++++  ++.|.+||+++++.+..+.....+..++|+|+++.+++++.
T Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~  314 (349)
T 1jmx_B          237 SVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV--LNRLAKYDLKQRKLIKAANLDHTYYCVAFDKKGDKLYLGGT  314 (349)
T ss_dssp             EEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE--ESEEEEEETTTTEEEEEEECSSCCCEEEECSSSSCEEEESB
T ss_pred             EEeccCCcEEecccccCCCcceeeEecCCCCCEEEEE--cCeEEEEECccCeEEEEEcCCCCccceEECCCCCEEEEecC
Confidence                            001345677889 99998888  88999999999998888776667889999999998887532


Q ss_pred             ccCceeEeecc
Q 021399          253 QDASAVTTTDH  263 (313)
Q Consensus       253 ~~~~~~~~~~~  263 (313)
                       + ..+.++|.
T Consensus       315 -~-~~v~v~d~  323 (349)
T 1jmx_B          315 -F-NDLAVFNP  323 (349)
T ss_dssp             -S-SEEEEEET
T ss_pred             -C-CeEEEEec
Confidence             2 33444443

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=99.80  E-value=7e-17  Score=138.27  Aligned_cols=211  Identities=15%  Similarity=0.170  Sum_probs=138.7

Q ss_pred             cccccceeEEEEccCCCEEEEee-CCCCeEEEeCC-CCc--EEEEecC---------CCCceEEEEECCCCCeEEEeeCC
Q 021399            7 KGHERPLTYLKYNKDGDLLFSCA-KDHTPTVWFAD-NGE--RLGTYRG---------HNGAVWCCDVSRDSMTLITGSAD   73 (313)
Q Consensus         7 ~~h~~~v~~~~fs~~g~~l~s~s-~d~~i~iw~~~-~~~--~~~~~~~---------H~~~V~~~~~~~~~~~l~s~s~D   73 (313)
                      ..|...+..++|+|||++|++++ .++.|++|++. +++  .+..+..         +...+.+++|+|+|+++++...+
T Consensus        82 ~~~~~~p~~~a~spdg~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~~  161 (347)
T 3hfq_A           82 VAPGTPPAYVAVDEARQLVYSANYHKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLGS  161 (347)
T ss_dssp             EEESCCCSEEEEETTTTEEEEEETTTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETTT
T ss_pred             ecCCCCCEEEEECCCCCEEEEEeCCCCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCcEEEEeCCC
Confidence            34667788999999999999888 68999999986 332  3333322         12348899999999977777778


Q ss_pred             CcEEEEECC-CCeEEEEecCCCCeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEE
Q 021399           74 QTAKLWNVE-TGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRA  152 (313)
Q Consensus        74 ~~v~vWd~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~  152 (313)
                      +.|++|++. +++......       +                                         . .........+
T Consensus       162 ~~v~~~~~~~~g~~~~~~~-------~-----------------------------------------~-~~~g~~p~~~  192 (347)
T 3hfq_A          162 DKVYVYNVSDAGQLSEQSV-------L-----------------------------------------T-MEAGFGPRHL  192 (347)
T ss_dssp             TEEEEEEECTTSCEEEEEE-------E-----------------------------------------E-CCTTCCEEEE
T ss_pred             CEEEEEEECCCCcEEEeee-------E-----------------------------------------E-cCCCCCCceE
Confidence            999999987 443221100       0                                         0 0001234568


Q ss_pred             EEccCCCEEEE-eeCCCeEEEEECCC--Cce--eeecccccC---ceeceEEEEECCCCCEE-EEeeCCCcEEEEECCC-
Q 021399          153 VWGPLNRTIIS-AGEDAIVRIWDTET--GKL--LKESDKETG---HKKTITSLAKAADGSHF-LTGSLDKSAKLWDART-  222 (313)
Q Consensus       153 ~~~~~~~~i~t-~~~d~~i~lwd~~~--~~~--~~~~~~~~~---h~~~v~~~~~s~~~~~l-~s~s~dg~i~iwd~~~-  222 (313)
                      +|+|+++++++ ...++.|++|++..  ++.  +........   ....+..++|+|||++| ++...++.|.+||++. 
T Consensus       193 ~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~~  272 (347)
T 3hfq_A          193 VFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTAD  272 (347)
T ss_dssp             EECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETTTEEEEEEECGG
T ss_pred             EECCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCCCEEEEEEECCC
Confidence            89999996555 56788999999763  432  111111110   11458899999999987 5566689999999873 


Q ss_pred             --CcEEEEEec-CCceeEEEeccCCCEEEEcccccCceeEee--ccCCCc
Q 021399          223 --LELIKTYVT-ERPVNAVTMSPLLDHVVLGGGQDASAVTTT--DHRAGK  267 (313)
Q Consensus       223 --~~~~~~~~~-~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~--~~~~~~  267 (313)
                        .+.+..+.. ...+..++|+|++..++++...+ ..+.+|  |...++
T Consensus       273 g~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~-~~v~v~~~d~~tg~  321 (347)
T 3hfq_A          273 GHLTLIQQISTEGDFPRDFDLDPTEAFVVVVNQNT-DNATLYARDLTSGK  321 (347)
T ss_dssp             GCEEEEEEEECSSSCCCEEEECTTSSEEEEEETTT-TEEEEEEECTTTCC
T ss_pred             CcEEEeEEEecCCCCcCeEEECCCCCEEEEEEcCC-CcEEEEEEeCCCCe
Confidence              344444443 34578999999999888775432 334444  444443

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=99.79  E-value=1.1e-17  Score=142.13  Aligned_cols=206  Identities=14%  Similarity=0.052  Sum_probs=143.3

Q ss_pred             cceeEEEEccCCCEEEEee------------CCCCeEEEeCCCCcEEEEecCCCCceEEEEECCCCCeEEEeeCCCcEEE
Q 021399           11 RPLTYLKYNKDGDLLFSCA------------KDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKL   78 (313)
Q Consensus        11 ~~v~~~~fs~~g~~l~s~s------------~d~~i~iw~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~v~v   78 (313)
                      ..+.+++|+|+|++|++++            .++.|.+||.++++.+..+.. ...+.+++|+|+++.++++  ++.|.+
T Consensus        82 ~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~--~~~i~~  158 (337)
T 1pby_B           82 KSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEA-PRQITMLAWARDGSKLYGL--GRDLHV  158 (337)
T ss_dssp             ECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEEC-CSSCCCEEECTTSSCEEEE--SSSEEE
T ss_pred             ccccceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEeC-CCCcceeEECCCCCEEEEe--CCeEEE
Confidence            3678899999999999886            679999999999988877765 4457788999999988777  689999


Q ss_pred             EECCCCeEEEEecCCCCeeEEEeecCCeEEEEECCCceec---c------c----------cceeeeeeeCCCCCCCce-
Q 021399           79 WNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMEL---N------S----------AIHVKRIARDPADQGGES-  138 (313)
Q Consensus        79 Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~------~----------~~~~~~~~~~~~~~~~~~-  138 (313)
                      ||+.+++.+..+..........+.+++..+++........   .      .          .+..++    ..  .++. 
T Consensus       159 ~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d----~~--~~~~~  232 (337)
T 1pby_B          159 MDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMD----LE--TGEMA  232 (337)
T ss_dssp             EETTTTEEEEEECSTTTTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEE----TT--TCCEE
T ss_pred             EECCCCcEeeeeeccccCCCceeCCCccEEeeeccCCCceeeeeeccccccccccccccccceEEEe----CC--CCCce
Confidence            9999998776654332111123444433222211100000   0      0          001111    11  1111 


Q ss_pred             EEEecCCCCceEEEEEccCCCEEEEeeCCCeEEEEECCCCceeeecccccCceeceEEEEECCCCCEEEEeeCCCcEEEE
Q 021399          139 VLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLW  218 (313)
Q Consensus       139 ~~~~~~~~~~i~~~~~~~~~~~i~t~~~d~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~dg~i~iw  218 (313)
                      ...+..+...+..+.|+|++++++++  ++.|++||+.+++.+..+.    ....+.+++|+|+|++|++++.++.|++|
T Consensus       233 ~~~~~~~~~~~~~~~~s~dg~~l~~~--~~~v~~~d~~~~~~~~~~~----~~~~~~~~~~s~dg~~l~~~~~~~~i~v~  306 (337)
T 1pby_B          233 MREVRIMDVFYFSTAVNPAKTRAFGA--YNVLESFDLEKNASIKRVP----LPHSYYSVNVSTDGSTVWLGGALGDLAAY  306 (337)
T ss_dssp             EEEEEECSSCEEEEEECTTSSEEEEE--ESEEEEEETTTTEEEEEEE----CSSCCCEEEECTTSCEEEEESBSSEEEEE
T ss_pred             EeecCCCCCceeeEEECCCCCEEEEe--CCeEEEEECCCCcCcceec----CCCceeeEEECCCCCEEEEEcCCCcEEEE
Confidence            22233445567789999999998887  6899999999887766543    22457889999999999999999999999


Q ss_pred             ECCCCcEEEEEec
Q 021399          219 DARTLELIKTYVT  231 (313)
Q Consensus       219 d~~~~~~~~~~~~  231 (313)
                      |+++++.+..+..
T Consensus       307 d~~~~~~~~~~~~  319 (337)
T 1pby_B          307 DAETLEKKGQVDL  319 (337)
T ss_dssp             ETTTCCEEEEEEC
T ss_pred             ECcCCcEEEEEEc
Confidence            9999998877653

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=99.79  E-value=2.6e-16  Score=135.49  Aligned_cols=270  Identities=11%  Similarity=0.070  Sum_probs=154.8

Q ss_pred             cCCCEEEEee----CCCCeEEEeC--CCCcEEEEecCCCCceEEEEECCCCCeEEEeeCC----CcEEEEECCC--CeEE
Q 021399           20 KDGDLLFSCA----KDHTPTVWFA--DNGERLGTYRGHNGAVWCCDVSRDSMTLITGSAD----QTAKLWNVET--GAQL   87 (313)
Q Consensus        20 ~~g~~l~s~s----~d~~i~iw~~--~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D----~~v~vWd~~~--~~~~   87 (313)
                      ++..+++.|+    .++.|.+|.+  ++++.......|......++|+|+++++++++.+    +.|.+|++..  ++..
T Consensus        11 ~~~~~~~vg~y~~~~~~~i~~~~~d~~~g~~~~~~~~~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~   90 (361)
T 3scy_A           11 DSELTMLVGTYTSGNSKGIYTFRFNEETGESLPLSDAEVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLH   90 (361)
T ss_dssp             GGEEEEEEEECCSSSCCEEEEEEEETTTCCEEEEEEEECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEE
T ss_pred             CCceEEEEEeccCCCCCCEEEEEEeCCCCCEEEeecccCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEE
Confidence            3344555553    4678999965  4555432222266777889999999999988876    8999998865  4433


Q ss_pred             EE--ec-CCCCeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecC--------CCCceEEEEEcc
Q 021399           88 FT--FN-FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKG--------PQGRINRAVWGP  156 (313)
Q Consensus        88 ~~--~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~i~~~~~~~  156 (313)
                      ..  .. .......+.+ .+..+.+.....     ..+.++++................+        +...+..+.|+|
T Consensus        91 ~~~~~~~~~~~p~~~~~-dg~~l~~~~~~~-----~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~sp  164 (361)
T 3scy_A           91 LLNTQKTMGADPCYLTT-NGKNIVTANYSG-----GSITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITP  164 (361)
T ss_dssp             EEEEEECSSSCEEEEEE-CSSEEEEEETTT-----TEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECT
T ss_pred             EeeEeccCCCCcEEEEE-CCCEEEEEECCC-----CEEEEEEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECC
Confidence            22  22 2334555555 444444433211     1122222211100000011111111        123457899999


Q ss_pred             CCCEEEEee-CCCeEEEEECCCCce------ee-e---cccccCceeceEEEEECCCCCEEEEee-CCCcEEEEECCCCc
Q 021399          157 LNRTIISAG-EDAIVRIWDTETGKL------LK-E---SDKETGHKKTITSLAKAADGSHFLTGS-LDKSAKLWDARTLE  224 (313)
Q Consensus       157 ~~~~i~t~~-~d~~i~lwd~~~~~~------~~-~---~~~~~~h~~~v~~~~~s~~~~~l~s~s-~dg~i~iwd~~~~~  224 (313)
                      +++++++++ .++.|++|++.....      +. .   ......+......++|+|||+++++++ .++.|.+||+++++
T Consensus       165 dg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~  244 (361)
T 3scy_A          165 DGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGM  244 (361)
T ss_dssp             TSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETTE
T ss_pred             CCCEEEEEeCCCCEEEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCc
Confidence            999665554 588999998764331      11 0   011112345678999999999887777 68999999998765


Q ss_pred             E--EEEEec----CCceeEEEeccCCCEEEEcccccCceeEeeccC--CCceeeeeeehhhhhhhccccccccceeEEEE
Q 021399          225 L--IKTYVT----ERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHR--AGKFEAKFFDKILQEEIGGVKGHFGPINALAF  296 (313)
Q Consensus       225 ~--~~~~~~----~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~f  296 (313)
                      .  +..+..    ......++|+|++..++++...+...+.+|+..  .+.+.          .+..+.. ...+.+++|
T Consensus       245 ~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~g~~~----------~~~~~~~-g~~~~~~~~  313 (361)
T 3scy_A          245 LDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLKADGVAIFKVDETNGTLT----------KVGYQLT-GIHPRNFII  313 (361)
T ss_dssp             EEEEEEEESCSSCCCCEEEEEECTTSSEEEEEECSSSCEEEEEEECTTTCCEE----------EEEEEEC-SSCCCEEEE
T ss_pred             eEEeEEEecCCCCCCCcccEEECCCCCEEEEECCCCCCEEEEEEEcCCCCcEE----------EeeEecC-CCCCceEEE
Confidence            4  232221    123568999999998877654312334444432  22211          1111222 346789999


Q ss_pred             CCCCCeeEEE
Q 021399          297 NPDGKRYGFL  306 (313)
Q Consensus       297 spdgk~~~~~  306 (313)
                      +|||+++..-
T Consensus       314 spdg~~l~~~  323 (361)
T 3scy_A          314 TPNGKYLLVA  323 (361)
T ss_dssp             CTTSCEEEEE
T ss_pred             CCCCCEEEEE
Confidence            9999976543

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=99.78  E-value=3e-18  Score=160.95  Aligned_cols=276  Identities=8%  Similarity=0.002  Sum_probs=166.4

Q ss_pred             ceeEEEEccCCCEEEEeeC---------CCCeEEEeCCCCcEE--EEecCCCCceEEEEECCCCCeEEEeeCCCcEEEEE
Q 021399           12 PLTYLKYNKDGDLLFSCAK---------DHTPTVWFADNGERL--GTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWN   80 (313)
Q Consensus        12 ~v~~~~fs~~g~~l~s~s~---------d~~i~iw~~~~~~~~--~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~v~vWd   80 (313)
                      .+.+++|||||++|++++.         |+.|++||+++++.+  ..+   ...+..++|||||+.++.++ |+.|++||
T Consensus        61 ~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~~g~~~~~~~l---~~~~~~~~~SPDG~~la~~~-~~~i~~~~  136 (719)
T 1z68_A           61 NASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLSNGEFVRGNEL---PRPIQYLCWSPVGSKLAYVY-QNNIYLKQ  136 (719)
T ss_dssp             TCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECCSSCC---CSSBCCEEECSSTTCEEEEE-TTEEEEES
T ss_pred             ceeeEEECCCCCeEEEEecCceeEEeecceEEEEEECCCCccccceec---CcccccceECCCCCEEEEEE-CCeEEEEe
Confidence            3899999999999999886         789999999998763  223   35688899999999998875 78999999


Q ss_pred             CCCCeEEEEecCCC-------------------CeeEEEeecCCeEEEEEC-CC-cee---c------------------
Q 021399           81 VETGAQLFTFNFDS-------------------PARSVDFAVGDKLAVITT-DP-FME---L------------------  118 (313)
Q Consensus        81 ~~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~-~~-~~~---~------------------  118 (313)
                      +.+++.........                   ....+.|+|+++.++... +. ...   +                  
T Consensus       137 ~~~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~  216 (719)
T 1z68_A          137 RPGDPPFQITFNGRENKIFNGIPDWVYEEEMLATKYALWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPK  216 (719)
T ss_dssp             STTSCCEECCCCCBTTTEEESSCCHHHHHHTTCSSCCEEECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCB
T ss_pred             CCCCCcEEEecCCCcCCeEcccccceeeeecccCcccEEECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCC
Confidence            98877654321111                   113688999876655533 21 000   0                  


Q ss_pred             ------cccceeeeeeeCCCCCCCce---EE-----EecCCCCceEEEEEccCCCEEEEeeCC----CeEEEEE----CC
Q 021399          119 ------NSAIHVKRIARDPADQGGES---VL-----ILKGPQGRINRAVWGPLNRTIISAGED----AIVRIWD----TE  176 (313)
Q Consensus       119 ------~~~~~~~~~~~~~~~~~~~~---~~-----~~~~~~~~i~~~~~~~~~~~i~t~~~d----~~i~lwd----~~  176 (313)
                            ...+.++++.      ++..   +.     .+.+|...+..+.|+|+++.+++....    ..|.+||    ..
T Consensus       217 ~g~~~~~~~l~~~d~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~  290 (719)
T 1z68_A          217 AGAKNPVVRIFIIDTT------YPAYVGPQEVPVPAMIASSDYYFSWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQ  290 (719)
T ss_dssp             TTSCCCEEEEEEEESS------CHHHHCCEECCCCHHHHTSCEEEEEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSS
T ss_pred             CCCCCCeeEEEEEECC------CCCccceeEccCCccCCCCcceEEEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCC
Confidence                  0001111111      1110   00     122466678899999998766664322    3588999    77


Q ss_pred             CCceeeecc-cccCceeceE-----EEEECCCCCEEEE--eeCCC--cEEEEECCCCcEEEEEec-CCceeEEEeccCCC
Q 021399          177 TGKLLKESD-KETGHKKTIT-----SLAKAADGSHFLT--GSLDK--SAKLWDARTLELIKTYVT-ERPVNAVTMSPLLD  245 (313)
Q Consensus       177 ~~~~~~~~~-~~~~h~~~v~-----~~~~s~~~~~l~s--~s~dg--~i~iwd~~~~~~~~~~~~-~~~~~~~~~~p~~~  245 (313)
                      +++...... ...+|...+.     .++|+|||+.|+.  ...+|  .|.+||+.+++. ..+.. ...+..+.+. +++
T Consensus       291 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~g~~~l~~~~~~~~~~-~~lt~~~~~v~~~~~~-d~~  368 (719)
T 1z68_A          291 TWDCPKTQEHIEESRTGWAGGFFVSTPVFSYDAISYYKIFSDKDGYKHIHYIKDTVENA-IQITSGKWEAINIFRV-TQD  368 (719)
T ss_dssp             SEECCGGGEEEEECSSSCSSSSSCCCCEECTTSSCEEEEEECTTSCEEEEEESSCSTTC-EECSCSSSCEEEEEEE-CSS
T ss_pred             CCceEEEEecccccCCceEccccCCccEECCCCCeEEEEEEccCCceEEEEEECCCCce-EecccCceEEEEEEEE-eCC
Confidence            765432221 0024555555     7899999996554  44555  577778877763 33332 3345566666 777


Q ss_pred             EEEEcccc-----cCceeEeeccCCCceeeeeeehhhhhhhc-cccccccceeEEEECCCCCeeEEEE
Q 021399          246 HVVLGGGQ-----DASAVTTTDHRAGKFEAKFFDKILQEEIG-GVKGHFGPINALAFNPDGKRYGFLL  307 (313)
Q Consensus       246 ~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~h~~~V~~~~fspdgk~~~~~~  307 (313)
                      .+++++..     ....++..+...+..+.        +++. .+.+|...+..++|+|||+++++..
T Consensus       369 ~i~~~~~~~~~~~~~~~l~~~~~~~g~~~~--------~~l~~~~~~~~~~~~~~~~s~dg~~l~~~~  428 (719)
T 1z68_A          369 SLFYSSNEFEEYPGRRNIYRISIGSYPPSK--------KCVTCHLRKERCQYYTASFSDYAKYYALVC  428 (719)
T ss_dssp             EEEEEESCGGGCTTCBEEEEEECSSSSCCE--------EESSTTTTTTTBCBEEEEECGGGSSEEEEE
T ss_pred             EEEEEEecCCCCCceEEEEEEeCCCCCCCc--------eeccCccCCCCCceEEEEECCCCCEEEEEc
Confidence            77766543     11112222211111000        1111 1334677888999999999988753

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=99.77  E-value=1.2e-16  Score=137.91  Aligned_cols=256  Identities=11%  Similarity=0.010  Sum_probs=160.0

Q ss_pred             EEEEccCCCEEEEeeC----------CCCeEEEeCCCCcEEEEecCC------CCceEEEEECCCCCeEEEeeC--CCcE
Q 021399           15 YLKYNKDGDLLFSCAK----------DHTPTVWFADNGERLGTYRGH------NGAVWCCDVSRDSMTLITGSA--DQTA   76 (313)
Q Consensus        15 ~~~fs~~g~~l~s~s~----------d~~i~iw~~~~~~~~~~~~~H------~~~V~~~~~~~~~~~l~s~s~--D~~v   76 (313)
                      .++|+|||++|++++.          ++.|.+||..+.+.+.++...      ......++++|||++++++..  +++|
T Consensus        54 ~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~~~~~~g~~p~~i~~spdg~~l~v~n~~~~~~v  133 (361)
T 2oiz_A           54 HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLPPKRVQGLNYDGLFRQTTDGKFIVLQNASPATSI  133 (361)
T ss_dssp             EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEECTTBCCBCCCGGGEEECTTSSEEEEEEESSSEEE
T ss_pred             ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEEcCccccccCCCcceEEECCCCCEEEEECCCCCCeE
Confidence            8999999999999863          677999999999988877643      234567899999999888763  6899


Q ss_pred             EEEECCCCeEEEE-ecCCCC----------eeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCC
Q 021399           77 KLWNVETGAQLFT-FNFDSP----------ARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGP  145 (313)
Q Consensus        77 ~vWd~~~~~~~~~-~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  145 (313)
                      .+||+.+++.+.. +.....          ...+.+.+++++.++..+..      ..........        ..+...
T Consensus       134 ~v~d~~~~~~~~~~i~~~~~~~v~~~p~~~~~~~~~~~dg~~~~v~~~~~------g~~~~~~~~~--------~~~~~~  199 (361)
T 2oiz_A          134 GIVDVAKGDYVEDVTAAAGCWSVIPQPNRPRSFMTICGDGGLLTINLGED------GKVASQSRSK--------QMFSVK  199 (361)
T ss_dssp             EEEETTTTEEEEEEGGGTTEEEEEECTTSSSEEEEEETTSSEEEEEECTT------SSEEEEEECC--------CCSCTT
T ss_pred             EEEECCCCcEEEEEecCCCcceeEEcCCCCeeEEEECCCCcEEEEEECCC------CcEeeecccc--------ceEcCC
Confidence            9999999987766 443211          11222333333332221100      0000000000        000011


Q ss_pred             CCceEEEEEccCCCEEEEeeCCCeEEEEECCCCce--eeeccccc------Cc-eeceEEEEECCCCCEEEEeeC-----
Q 021399          146 QGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKL--LKESDKET------GH-KKTITSLAKAADGSHFLTGSL-----  211 (313)
Q Consensus       146 ~~~i~~~~~~~~~~~i~t~~~d~~i~lwd~~~~~~--~~~~~~~~------~h-~~~v~~~~~s~~~~~l~s~s~-----  211 (313)
                      ..++ .+..++++..++..+.++.+.++|+.....  ........      +. ......++++|+++.++.+..     
T Consensus       200 ~~~~-~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~a~~~dg~~lyv~~~~~~~~  278 (361)
T 2oiz_A          200 DDPI-FIAPALDKDKAHFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDKAKNWVPGGYNLVGLHRASGRMYVFMHPDGKE  278 (361)
T ss_dssp             TSCB-CSCCEECSSEEEEEBTTSEEEEEECSSSSCEEEEEEESCCHHHHHTTCEECCSSCEEEETTTTEEEEEEESSCCT
T ss_pred             CCce-EEEecccCCEEEEEeCCCeEEEEEecCCCceecccccccCccccccccccCCeeEEEEecCCCeEEEEEccCCCc
Confidence            1111 112245566667777889999999865432  11110000      00 011123678999888777643     


Q ss_pred             ------CCcEEEEECCCCcEEEEEecCCceeEEEeccCCCEEEEcccccCceeEeeccCCCceeeeeeehhhh--hhhcc
Q 021399          212 ------DKSAKLWDARTLELIKTYVTERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQ--EEIGG  283 (313)
Q Consensus       212 ------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~  283 (313)
                            .++|.+||+++++.+.++.... ...++|+|+++.++++..   +.+            .+||..++  +.++.
T Consensus       279 ~~~~~~~~~v~viD~~t~~~v~~i~~~~-p~~ia~spdg~~l~v~n~---~~v------------~v~D~~t~~l~~~~~  342 (361)
T 2oiz_A          279 GTHKFPAAEIWVMDTKTKQRVARIPGRD-ALSMTIDQQRNLMLTLDG---GNV------------NVYDISQPEPKLLRT  342 (361)
T ss_dssp             TCTTCCCSEEEEEETTTTEEEEEEECTT-CCEEEEETTTTEEEEECS---SCE------------EEEECSSSSCEEEEE
T ss_pred             ccccCCCceEEEEECCCCcEEEEEecCC-eeEEEECCCCCEEEEeCC---CeE------------EEEECCCCcceeeEE
Confidence                  3479999999999999988777 999999999998887653   334            44555555  55555


Q ss_pred             ccccccceeEEEECCCCC
Q 021399          284 VKGHFGPINALAFNPDGK  301 (313)
Q Consensus       284 ~~~h~~~V~~~~fspdgk  301 (313)
                      +..+...-..++|+|||+
T Consensus       343 i~~~G~~P~~~~~~p~G~  360 (361)
T 2oiz_A          343 IEGAAEASLQVQFHPVGG  360 (361)
T ss_dssp             ETTSCSSEEEEEECCCSC
T ss_pred             eccCCCCcEEEEecCCCC
Confidence            445666778999999997

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=99.77  E-value=7.4e-17  Score=139.35  Aligned_cols=237  Identities=10%  Similarity=0.068  Sum_probs=150.6

Q ss_pred             cceeEEEEccCCCEEEEeeCCCCeEEEeCC-CCcEEEEecC-CCCceEEEEECCCCCe--EEEee-------------CC
Q 021399           11 RPLTYLKYNKDGDLLFSCAKDHTPTVWFAD-NGERLGTYRG-HNGAVWCCDVSRDSMT--LITGS-------------AD   73 (313)
Q Consensus        11 ~~v~~~~fs~~g~~l~s~s~d~~i~iw~~~-~~~~~~~~~~-H~~~V~~~~~~~~~~~--l~s~s-------------~D   73 (313)
                      ..+..++|+|||++|++++.+ .|.+|+++ +++....... ..+....++|+|+|+.  +++++             .+
T Consensus        40 ~~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~~~~~~~~~~g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~  118 (365)
T 1jof_A           40 EPISWMTFDHERKNIYGAAMK-KWSSFAVKSPTEIVHEASHPIGGHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFA  118 (365)
T ss_dssp             CCCSEEEECTTSSEEEEEEBT-EEEEEEEEETTEEEEEEEEECCSSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSC
T ss_pred             CCCcEEEECCCCCEEEEEccc-eEEEEEECCCCCEEEeeEeecCCCCccEEECCCCCEEEEEEecCCcceeccceeecCC
Confidence            467889999999999999988 99999987 7766443321 0123556889999984  55654             68


Q ss_pred             CcEEEEECCC-CeEEEEecCCCCeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEe-cCCCCceEE
Q 021399           74 QTAKLWNVET-GAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLIL-KGPQGRINR  151 (313)
Q Consensus        74 ~~v~vWd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~  151 (313)
                      +++++|++.. ++......                                                 .+ ..+...+..
T Consensus       119 g~v~v~~~~~~g~~~~~~~-------------------------------------------------~~~~~~~~~~~~  149 (365)
T 1jof_A          119 GYGNVFSVSETGKLEKNVQ-------------------------------------------------NYEYQENTGIHG  149 (365)
T ss_dssp             CEEEEEEECTTCCEEEEEE-------------------------------------------------EEECCTTCCEEE
T ss_pred             ceEEEEccCCCCcCcceEe-------------------------------------------------eEEeCCCCcceE
Confidence            9999999863 43221100                                                 00 012345778


Q ss_pred             EEEccCCCEEEEee-CCCeEEEEECC-CCceeeecccc-cCceeceEEEEECCCCCEEEEeeC-CCcEEEEECC--CCcE
Q 021399          152 AVWGPLNRTIISAG-EDAIVRIWDTE-TGKLLKESDKE-TGHKKTITSLAKAADGSHFLTGSL-DKSAKLWDAR--TLEL  225 (313)
Q Consensus       152 ~~~~~~~~~i~t~~-~d~~i~lwd~~-~~~~~~~~~~~-~~h~~~v~~~~~s~~~~~l~s~s~-dg~i~iwd~~--~~~~  225 (313)
                      +.|+|++++++++. .++.|++||+. +++........ ..|...+..++|+|||+++++++. +++|.+|+++  +++.
T Consensus       150 ~~~spdG~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~  229 (365)
T 1jof_A          150 MVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMP  229 (365)
T ss_dssp             EEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCE
T ss_pred             EEECCCCCEEEEEcCCCCEEEEEEECCCCCEEEeeeEecCCCCCCCCEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcE
Confidence            89999999887765 46799999998 66542211111 123456899999999999888775 7899999765  5654


Q ss_pred             EE---EEe---cC----C-------ceeEEE-eccCCCEEEEcccccC----ceeEeeccC-CCceeeeeeehhhhhhhc
Q 021399          226 IK---TYV---TE----R-------PVNAVT-MSPLLDHVVLGGGQDA----SAVTTTDHR-AGKFEAKFFDKILQEEIG  282 (313)
Q Consensus       226 ~~---~~~---~~----~-------~~~~~~-~~p~~~~~~~~~~~~~----~~~~~~~~~-~~~~~~~~~~~~~~~~~~  282 (313)
                      ..   .+.   ..    .       .+..++ |+|+++.++++.....    ..+.+|+.. .+.... ..        .
T Consensus       230 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~~~g~~~~-~~--------~  300 (365)
T 1jof_A          230 VYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEK-QL--------F  300 (365)
T ss_dssp             EEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEE-EE--------E
T ss_pred             EEccceEEcCCCCcCCcccccccccccccEEEECCCCCEEEEECCCCCCCCCCeEEEEEECCCCCEEE-ee--------e
Confidence            32   222   11    1       377899 9999998877643222    134444432 222110 00        0


Q ss_pred             cccccccceeEEEECC---CCCeeEEE
Q 021399          283 GVKGHFGPINALAFNP---DGKRYGFL  306 (313)
Q Consensus       283 ~~~~h~~~V~~~~fsp---dgk~~~~~  306 (313)
                      ....+...+..++|+|   ||++++..
T Consensus       301 ~~~~~~~~~~~~a~sp~~~dg~~l~v~  327 (365)
T 1jof_A          301 LSPTPTSGGHSNAVSPCPWSDEWMAIT  327 (365)
T ss_dssp             EEECSSCCTTCCCEEECTTCTTEEEEE
T ss_pred             eeecCCCCcccceecCCCcCCCEEEEE
Confidence            0112344567889999   89987654

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=99.76  E-value=1.5e-16  Score=138.34  Aligned_cols=278  Identities=13%  Similarity=0.091  Sum_probs=158.3

Q ss_pred             eeEEEEccCCCEEEEeeCC---CCeEEEeCCCCcEEEEecCCCCceEEEEECCCCCeEEEeeCCCcEEEEECCCCeEEEE
Q 021399           13 LTYLKYNKDGDLLFSCAKD---HTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFT   89 (313)
Q Consensus        13 v~~~~fs~~g~~l~s~s~d---~~i~iw~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~v~vWd~~~~~~~~~   89 (313)
                      +..++|||||++|+..+.+   ..|.+||.++++......++......+.|+|||+.|+.++.++.+.+||+.+++....
T Consensus        38 ~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~~~~~~~  117 (396)
T 3c5m_A           38 FYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQAVQLTEGKGDNTFGGFISTDERAFFYVKNELNLMKVDLETLEEQVI  117 (396)
T ss_dssp             TTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTEEEECCCSSCBCTTTCEECTTSSEEEEEETTTEEEEEETTTCCEEEE
T ss_pred             eecCcCCCCCCEEEEEEecCCCceEEEEECCCCcEEEeecCCCCccccceECCCCCEEEEEEcCCcEEEEECCCCCcEEE
Confidence            7788999999998877543   3577789888876544333333333478999999999999999999999998876554


Q ss_pred             ecCCCCeeEEEeecCCeEEEEEC----------------CCce-ec------cccceeeeeeeCCCCCCCceEEEecCCC
Q 021399           90 FNFDSPARSVDFAVGDKLAVITT----------------DPFM-EL------NSAIHVKRIARDPADQGGESVLILKGPQ  146 (313)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~-~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~  146 (313)
                      ......     +.++++.++...                +... ..      .....++.+  +.  ..++... +..+.
T Consensus       118 ~~~~~~-----~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~~l~~~--d~--~~g~~~~-~~~~~  187 (396)
T 3c5m_A          118 YTVDEE-----WKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHTNPTCRLIKV--DI--ETGELEV-IHQDT  187 (396)
T ss_dssp             EECCTT-----EEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHTCCCEEEEEE--ET--TTCCEEE-EEEES
T ss_pred             Eecccc-----cCCCCCEEEeccCCccccccccccccCCCCcceeeeeeccCCCcceEEEE--EC--CCCcEEe-eccCC
Confidence            432221     111111111100                0000 00      000111111  11  1122222 22345


Q ss_pred             CceEEEEEcc-CCCEEEEeeCC------CeEEEEECCCCceeeecccccCceeceEEEEECCCCCEEEEeeCC-----Cc
Q 021399          147 GRINRAVWGP-LNRTIISAGED------AIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLD-----KS  214 (313)
Q Consensus       147 ~~i~~~~~~~-~~~~i~t~~~d------~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d-----g~  214 (313)
                      ..+..+.|+| ++..++..+.+      ..|.+||+..++. ..+.. ......+..++|+|||++|+.++.+     +.
T Consensus       188 ~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~-~~l~~-~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~  265 (396)
T 3c5m_A          188 AWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNV-RKIKE-HAEGESCTHEFWIPDGSAMAYVSYFKGQTDRV  265 (396)
T ss_dssp             SCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCC-EESSC-CCTTEEEEEEEECTTSSCEEEEEEETTTCCEE
T ss_pred             cccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCce-eEeec-cCCCccccceEECCCCCEEEEEecCCCCccce
Confidence            5678899999 78777766543      4688899876543 22221 1113457889999999988877654     44


Q ss_pred             EEEEECCCCcEEEEEecCCceeEEEecc-CCCEEEEcccccCceeEeec----cCCCceeeeeeehhhhhhhcccccccc
Q 021399          215 AKLWDARTLELIKTYVTERPVNAVTMSP-LLDHVVLGGGQDASAVTTTD----HRAGKFEAKFFDKILQEEIGGVKGHFG  289 (313)
Q Consensus       215 i~iwd~~~~~~~~~~~~~~~~~~~~~~p-~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~h~~  289 (313)
                      |++||+++++.......+. .. ++|+| ++..++.++..  ..+...+    ...+...+..||..+++. ..+..|..
T Consensus       266 l~~~d~~~g~~~~l~~~~~-~~-~~~s~~dg~~l~~~~~~--~p~~~~~~~~~~~~~~~~i~~~d~~~~~~-~~l~~~~~  340 (396)
T 3c5m_A          266 IYKANPETLENEEVMVMPP-CS-HLMSNFDGSLMVGDGCD--APVDVADADSYNIENDPFLYVLNTKAKSA-QKLCKHST  340 (396)
T ss_dssp             EEEECTTTCCEEEEEECCS-EE-EEEECSSSSEEEEEECC--C----------CCCCCCEEEEEETTTTBC-CEEEECCC
T ss_pred             EEEEECCCCCeEEeeeCCC-CC-CCccCCCCceEEEecCC--cceeeccccccccCCCCcEEEEecccCce-EEccCCCC
Confidence            9999999887644332222 33 88999 98866654321  0000000    001122344555443332 22333433


Q ss_pred             -----------ceeEEEECCCCCeeEEEE
Q 021399          290 -----------PINALAFNPDGKRYGFLL  307 (313)
Q Consensus       290 -----------~V~~~~fspdgk~~~~~~  307 (313)
                                 .+..++|+|||+.++|..
T Consensus       341 ~~~~~~~~~~~~~~~~~~s~dg~~l~~~s  369 (396)
T 3c5m_A          341 SWDVLDGDRQITHPHPSFTPNDDGVLFTS  369 (396)
T ss_dssp             CCCCBTTBSSTTCCCCEECTTSSEEEEEE
T ss_pred             ccccccccccCCCCCceEccCCCeEEEEe
Confidence                       256789999999998865

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=99.76  E-value=2.3e-15  Score=128.13  Aligned_cols=242  Identities=15%  Similarity=0.146  Sum_probs=165.7

Q ss_pred             ccceeEEEEccCCCEEEEeeCC------------------------CCeEEEeCCCCcEEEEec-CCCCceEEEEECCCC
Q 021399           10 ERPLTYLKYNKDGDLLFSCAKD------------------------HTPTVWFADNGERLGTYR-GHNGAVWCCDVSRDS   64 (313)
Q Consensus        10 ~~~v~~~~fs~~g~~l~s~s~d------------------------~~i~iw~~~~~~~~~~~~-~H~~~V~~~~~~~~~   64 (313)
                      .+.+.+++++|+|+++++.+.+                        +.|.+||.++++.+..+. ++-.....++++++|
T Consensus        23 l~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~p~gia~d~~g  102 (329)
T 3fvz_A           23 PGQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGKNLFYLPHGLSIDTDG  102 (329)
T ss_dssp             CSCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECTTTCSSEEEEEECTTS
T ss_pred             cCCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCCCccCCceEEEECCCC
Confidence            4568899999999999988887                        479999999998877665 455678999999999


Q ss_pred             CeEEEeeCCCcEEEEECCCCe-EEEEecCCCCeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEec
Q 021399           65 MTLITGSADQTAKLWNVETGA-QLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILK  143 (313)
Q Consensus        65 ~~l~s~s~D~~v~vWd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  143 (313)
                      +++++...++.|++||..... .+..+....                                    ..   +.    -.
T Consensus       103 ~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~------------------------------------~~---g~----~~  139 (329)
T 3fvz_A          103 NYWVTDVALHQVFKLDPHSKEGPLLILGRSM------------------------------------QP---GS----DQ  139 (329)
T ss_dssp             CEEEEETTTTEEEEECTTCSSCCSEEESBTT------------------------------------BC---CC----ST
T ss_pred             CEEEEECCCCEEEEEeCCCCeEEEEEecccC------------------------------------CC---CC----Cc
Confidence            988988889999999976432 111110000                                    00   00    01


Q ss_pred             CCCCceEEEEEcc-CCCEEEEee-CCCeEEEEECCCCceeeecccc-------cCceeceEEEEECCC-CCEEEEeeCCC
Q 021399          144 GPQGRINRAVWGP-LNRTIISAG-EDAIVRIWDTETGKLLKESDKE-------TGHKKTITSLAKAAD-GSHFLTGSLDK  213 (313)
Q Consensus       144 ~~~~~i~~~~~~~-~~~~i~t~~-~d~~i~lwd~~~~~~~~~~~~~-------~~h~~~v~~~~~s~~-~~~l~s~s~dg  213 (313)
                      ++......++++| +++.+++.+ .++.|++|| .+++.+..+...       .++-.....++++|+ +..+++...++
T Consensus       140 ~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~-~~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~  218 (329)
T 3fvz_A          140 NHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFS-PSGKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENG  218 (329)
T ss_dssp             TCCSSEEEEEECTTTCCEEEEECSSCCEEEEEC-TTSCEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTT
T ss_pred             cccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEc-CCCCEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCC
Confidence            2234567888999 788778776 689999999 456655544211       123345889999998 77778888899


Q ss_pred             cEEEEECCCCcEEEEEec---CCceeEEEeccCCCEEEEcccccCceeEeeccCCCceeeeeeehhhhhhhccc---ccc
Q 021399          214 SAKLWDARTLELIKTYVT---ERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGV---KGH  287 (313)
Q Consensus       214 ~i~iwd~~~~~~~~~~~~---~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~h  287 (313)
                      .|++||.++++.+..+..   ...+..++++|  ..++...+.    +++.+.  ....++.|+..+++.+..+   .++
T Consensus       219 ~I~~~~~~~G~~~~~~~~~~~~~~~~~~~~~p--g~~~~~~g~----~~v~~~--~~~~v~~~~~~~g~~~~~~~~~~~~  290 (329)
T 3fvz_A          219 RIQCFKTDTKEFVREIKHASFGRNVFAISYIP--GFLFAVNGK----PYFGDQ--EPVQGFVMNFSSGEIIDVFKPVRKH  290 (329)
T ss_dssp             EEEEEETTTCCEEEEECCTTTTTCEEEEEEET--TEEEEEECC----CCTTCS--CCCCEEEEETTTCCEEEEECCSSSC
T ss_pred             EEEEEECCCCcEEEEEeccccCCCcceeeecC--CEEEEeCCC----EEeccC--CCcEEEEEEcCCCeEEEEEcCCCCc
Confidence            999999998998888742   34577899999  444443322    111111  1123455665555554443   356


Q ss_pred             ccceeEEEECCCCCee
Q 021399          288 FGPINALAFNPDGKRY  303 (313)
Q Consensus       288 ~~~V~~~~fspdgk~~  303 (313)
                      .....+|+|+|||+.+
T Consensus       291 ~~~p~~ia~~~dG~ly  306 (329)
T 3fvz_A          291 FDMPHDIVASEDGTVY  306 (329)
T ss_dssp             CSSEEEEEECTTSEEE
T ss_pred             cCCeeEEEECCCCCEE
Confidence            7788999999999544

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=99.75  E-value=4.8e-16  Score=132.69  Aligned_cols=213  Identities=12%  Similarity=0.065  Sum_probs=141.9

Q ss_pred             ceeEEEEccCCCEEE-EeeCCCCeEEEeCCCCcEEEEecCCC------CceEEEEECCCCCeEEEeeCC-----------
Q 021399           12 PLTYLKYNKDGDLLF-SCAKDHTPTVWFADNGERLGTYRGHN------GAVWCCDVSRDSMTLITGSAD-----------   73 (313)
Q Consensus        12 ~v~~~~fs~~g~~l~-s~s~d~~i~iw~~~~~~~~~~~~~H~------~~V~~~~~~~~~~~l~s~s~D-----------   73 (313)
                      .+..++|+|+|++++ +...++.|.+||.++++.+..+..+.      ..+.+++|+|+|+.+++++.+           
T Consensus        44 ~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~  123 (349)
T 1jmx_B           44 GPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVK  123 (349)
T ss_dssp             SSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEEC
T ss_pred             CCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEEEEEEcccccccccccccceEECCCCCEEEEEcccccccccccccC
Confidence            578899999998665 55578999999999998887776432      237789999999999988865           


Q ss_pred             -CcEEEEECCCCe---EEEEecCCCCeeEEEeecCCeEEEEECCCceeccc--cceeeeeeeCC----------------
Q 021399           74 -QTAKLWNVETGA---QLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNS--AIHVKRIARDP----------------  131 (313)
Q Consensus        74 -~~v~vWd~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~----------------  131 (313)
                       +.|.+||+.+++   .+........+..+.|++++++.+ ........+.  ......+....                
T Consensus       124 ~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~l~~-~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  202 (349)
T 1jmx_B          124 PPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGSLYV-AGPDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWP  202 (349)
T ss_dssp             CCEEEEEEGGGGGGBCCSEEEECCSSCCCEEECTTSCEEE-ESSSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCC
T ss_pred             CCeEEEEECCCccccceeeeccCCCcccceeECCCCcEEE-ccCcEEEEeCCCCceeccccccccCCccccCccceeeec
Confidence             999999998743   223333334456677888777433 3322211111  00001110000                


Q ss_pred             -CCC------------------------------------CCceEEEecCCCCceEEEEEcc-CCCEEEEeeCCCeEEEE
Q 021399          132 -ADQ------------------------------------GGESVLILKGPQGRINRAVWGP-LNRTIISAGEDAIVRIW  173 (313)
Q Consensus       132 -~~~------------------------------------~~~~~~~~~~~~~~i~~~~~~~-~~~~i~t~~~d~~i~lw  173 (313)
                       ...                                    ..........+...+..+.++| ++++++++  ++.|.+|
T Consensus       203 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dg~~l~~~--~~~v~~~  280 (349)
T 1jmx_B          203 HQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV--LNRLAKY  280 (349)
T ss_dssp             CCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE--ESEEEEE
T ss_pred             CCCcceeEEeeeeeeecCCCcCCccccccceeEEEEeccCCcEEecccccCCCcceeeEecCCCCCEEEEE--cCeEEEE
Confidence             000                                    0000000111223456778889 99988887  8899999


Q ss_pred             ECCCCceeeecccccCceeceEEEEECCCCCEEEEeeCCCcEEEEECCCCcEEEEEec
Q 021399          174 DTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVT  231 (313)
Q Consensus       174 d~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~  231 (313)
                      |+.+++.+..+.    ....+.+++|+|+|++|++++.++.|++||+++++.+..+..
T Consensus       281 d~~~~~~~~~~~----~~~~~~~~~~s~dg~~l~~~~~~~~v~v~d~~~~~~~~~~~~  334 (349)
T 1jmx_B          281 DLKQRKLIKAAN----LDHTYYCVAFDKKGDKLYLGGTFNDLAVFNPDTLEKVKNIKL  334 (349)
T ss_dssp             ETTTTEEEEEEE----CSSCCCEEEECSSSSCEEEESBSSEEEEEETTTTEEEEEEEC
T ss_pred             ECccCeEEEEEc----CCCCccceEECCCCCEEEEecCCCeEEEEeccccceeeeeec
Confidence            999888766543    123467899999999999988899999999999988877643

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=99.72  E-value=9.1e-15  Score=121.67  Aligned_cols=228  Identities=12%  Similarity=0.134  Sum_probs=154.3

Q ss_pred             cccccceeEEEEccCCCEEEEeeCCCCeEEEeCCCCcEEEEec------CCCCceEEEEE-CCCCCeEEEeeC-CCcEEE
Q 021399            7 KGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYR------GHNGAVWCCDV-SRDSMTLITGSA-DQTAKL   78 (313)
Q Consensus         7 ~~h~~~v~~~~fs~~g~~l~s~s~d~~i~iw~~~~~~~~~~~~------~H~~~V~~~~~-~~~~~~l~s~s~-D~~v~v   78 (313)
                      .+|...+.+++++++|+++++.+.++.|++||.+ ++.+..+.      +|...+..+++ .++++++++... ++.|++
T Consensus        26 ~g~~~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~-g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~  104 (286)
T 1q7f_A           26 EGQFTEPSGVAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQI  104 (286)
T ss_dssp             TTCBSCEEEEEECTTCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEE
T ss_pred             CCccCCCceEEECCCCCEEEEECCCCEEEEECCC-CcEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCCCCCEEEE
Confidence            4566778999999999999988889999999976 66666653      34467889999 577777776643 889999


Q ss_pred             EECCCCeEEEEecCCCCeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEccCC
Q 021399           79 WNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLN  158 (313)
Q Consensus        79 Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~  158 (313)
                      ||. +++.+..+..                                                   .+...+..++++|++
T Consensus       105 ~d~-~g~~~~~~~~---------------------------------------------------~~~~~~~~i~~~~~g  132 (286)
T 1q7f_A          105 YNQ-YGQFVRKFGA---------------------------------------------------TILQHPRGVTVDNKG  132 (286)
T ss_dssp             ECT-TSCEEEEECT---------------------------------------------------TTCSCEEEEEECTTS
T ss_pred             ECC-CCcEEEEecC---------------------------------------------------ccCCCceEEEEeCCC
Confidence            994 4443221100                                                   012245677788888


Q ss_pred             CEEEEeeCCCeEEEEECCCCceeeecccccCceeceEEEEECCCCCEEEEeeCCCcEEEEECCCCcEEEEEecC---Cce
Q 021399          159 RTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTE---RPV  235 (313)
Q Consensus       159 ~~i~t~~~d~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~---~~~  235 (313)
                      +.+++...++.|++||.. ++.+..+.. ..+...+..++++++|+.+++.+.++.|++||.. ++.+..+...   ..+
T Consensus       133 ~l~v~~~~~~~i~~~~~~-g~~~~~~~~-~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~g~~~~p  209 (286)
T 1q7f_A          133 RIIVVECKVMRVIIFDQN-GNVLHKFGC-SKHLEFPNGVVVNDKQEIFISDNRAHCVKVFNYE-GQYLRQIGGEGITNYP  209 (286)
T ss_dssp             CEEEEETTTTEEEEECTT-SCEEEEEEC-TTTCSSEEEEEECSSSEEEEEEGGGTEEEEEETT-CCEEEEESCTTTSCSE
T ss_pred             CEEEEECCCCEEEEEcCC-CCEEEEeCC-CCccCCcEEEEECCCCCEEEEECCCCEEEEEcCC-CCEEEEEccCCccCCC
Confidence            888877788999999964 444444321 1344568999999999988888889999999974 5566665432   457


Q ss_pred             eEEEeccCCCEEEEcccccCceeEeeccCCCceeeeeeehhhhhhhcccccc--ccceeEEEECCCCCeeE
Q 021399          236 NAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGH--FGPINALAFNPDGKRYG  304 (313)
Q Consensus       236 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h--~~~V~~~~fspdgk~~~  304 (313)
                      ..++++|++.. +++...+...+..++.. +.+            +..+..+  ...+.+++|+|||+.+.
T Consensus       210 ~~i~~d~~G~l-~v~~~~~~~~i~~~~~~-g~~------------~~~~~~~~~~~~~~~i~~~~~g~l~v  266 (286)
T 1q7f_A          210 IGVGINSNGEI-LIADNHNNFNLTIFTQD-GQL------------ISALESKVKHAQCFDVALMDDGSVVL  266 (286)
T ss_dssp             EEEEECTTCCE-EEEECSSSCEEEEECTT-SCE------------EEEEEESSCCSCEEEEEEETTTEEEE
T ss_pred             cEEEECCCCCE-EEEeCCCCEEEEEECCC-CCE------------EEEEcccCCCCcceeEEECCCCcEEE
Confidence            88999998864 44433222245555532 221            1111112  23478999999998654

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=99.72  E-value=1.4e-16  Score=146.05  Aligned_cols=226  Identities=11%  Similarity=0.034  Sum_probs=141.9

Q ss_pred             CCceEEEEECCCCCeEEEeeC-CCcEEEEECCCCeEEEEecCC-CCeeEEEeecCCeEEEEECCCceeccccceeeeeee
Q 021399           52 NGAVWCCDVSRDSMTLITGSA-DQTAKLWNVETGAQLFTFNFD-SPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIAR  129 (313)
Q Consensus        52 ~~~V~~~~~~~~~~~l~s~s~-D~~v~vWd~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  129 (313)
                      ..+|++++|+|||+.+++++. ||+++||++++++........ ..+..+.|+|+ ++++......  ......++.+..
T Consensus        21 ~~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g~~~~lt~~~~~~~~~~~~spd-~~l~~~~~~~--g~~~~~l~~~~~   97 (582)
T 3o4h_A           21 AVEKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGGETVKLNREPINSVLDPHYGVG-RVILVRDVSK--GAEQHALFKVNT   97 (582)
T ss_dssp             HSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTEEEECCSSCCSEECEECTTCS-EEEEEEECST--TSCCEEEEEEET
T ss_pred             ccchheeecCCCCCeEEEEEccCCceeEEEEcCCCcEeeecccccccccccCCCC-eEEEEeccCC--CCcceEEEEEec
Confidence            567999999999999998886 999999999777665544443 35667788877 6554432100  001112222211


Q ss_pred             CCCCCCCceEEEecCCCCceEEEEEccCCC--EEEEeeCCCeEEEEECCCCceeeecccccCceeceEEEEECCCCCEEE
Q 021399          130 DPADQGGESVLILKGPQGRINRAVWGPLNR--TIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFL  207 (313)
Q Consensus       130 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~--~i~t~~~d~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~  207 (313)
                      .  .. +... .+... .......|+|+++  .+++++.+ .+.+||+.+++..+...    +..  .+++|+|||++|+
T Consensus        98 ~--~~-g~~~-~l~~~-~~~~~~~~s~dg~~~~~~s~~~~-~~~l~d~~~g~~~~l~~----~~~--~~~~~spDG~~la  165 (582)
T 3o4h_A           98 S--RP-GEEQ-RLEAV-KPMRILSGVDTGEAVVFTGATED-RVALYALDGGGLRELAR----LPG--FGFVSDIRGDLIA  165 (582)
T ss_dssp             T--ST-TCCE-ECTTS-CSBEEEEEEECSSCEEEEEECSS-CEEEEEEETTEEEEEEE----ESS--CEEEEEEETTEEE
T ss_pred             c--CC-Cccc-cccCC-CCceeeeeCCCCCeEEEEecCCC-CceEEEccCCcEEEeec----CCC--ceEEECCCCCEEE
Confidence            0  01 1111 22222 2234567888875  34444444 45599998876533221    222  7889999999999


Q ss_pred             EeeCC----CcEEEEECCCCcEEEEEecCCceeEEEeccCCCEEEEcccccCceeEeeccCCCceeeeeeehhhhhhhcc
Q 021399          208 TGSLD----KSAKLWDARTLELIKTYVTERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGG  283 (313)
Q Consensus       208 s~s~d----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  283 (313)
                      +++.|    +.|++||+++++...-..+...+..++|+|++..++.+. .++           ...+.+||..+++.. .
T Consensus       166 ~~~~~~~~~~~i~~~d~~~g~~~~l~~~~~~~~~~~~SpDG~~l~~~~-~~~-----------~~~i~~~d~~~~~~~-~  232 (582)
T 3o4h_A          166 GLGFFGGGRVSLFTSNLSSGGLRVFDSGEGSFSSASISPGMKVTAGLE-TAR-----------EARLVTVDPRDGSVE-D  232 (582)
T ss_dssp             EEEEEETTEEEEEEEETTTCCCEEECCSSCEEEEEEECTTSCEEEEEE-CSS-----------CEEEEEECTTTCCEE-E
T ss_pred             EEEEcCCCCeEEEEEcCCCCCceEeecCCCccccceECCCCCEEEEcc-CCC-----------eeEEEEEcCCCCcEE-E
Confidence            88887    789999999988754333456689999999999888332 221           123445555444443 4


Q ss_pred             ccccccceeEEE--------ECCCCCeeEEE
Q 021399          284 VKGHFGPINALA--------FNPDGKRYGFL  306 (313)
Q Consensus       284 ~~~h~~~V~~~~--------fspdgk~~~~~  306 (313)
                      +.+|...+..++        ||||| .+.|.
T Consensus       233 ~~~~~~~~~~~~~~~~~~~~~spdg-~~~~~  262 (582)
T 3o4h_A          233 LELPSKDFSSYRPTAITWLGYLPDG-RLAVV  262 (582)
T ss_dssp             CCCSCSHHHHHCCSEEEEEEECTTS-CEEEE
T ss_pred             ccCCCcChhhhhhccccceeEcCCC-cEEEE
Confidence            556777777777        99999 44443

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=99.71  E-value=2.4e-14  Score=119.78  Aligned_cols=235  Identities=11%  Similarity=0.035  Sum_probs=161.8

Q ss_pred             ccccccccceeEEEEccCCC-EEEEeeCCCCeEEEeCCCCcEEEEecCCCCceEEEEECCCCCeEEEeeCCCcEEEEECC
Q 021399            4 ILMKGHERPLTYLKYNKDGD-LLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVE   82 (313)
Q Consensus         4 ~~l~~h~~~v~~~~fs~~g~-~l~s~s~d~~i~iw~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~v~vWd~~   82 (313)
                      ..+..+.....+++|+|+|+ .++++..++.|..|+.+++  ...+..+...+.+++++++|+++++...++.|.+||..
T Consensus        21 ~~l~~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~~l~~~~dg~l~v~~~~~~~i~~~d~~   98 (296)
T 3e5z_A           21 RRLADGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ--LSPEMHPSHHQNGHCLNKQGHLIACSHGLRRLERQREP   98 (296)
T ss_dssp             EEEECCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC--EEEEESSCSSEEEEEECTTCCEEEEETTTTEEEEECST
T ss_pred             EEEecCCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC--eEEEECCCCCcceeeECCCCcEEEEecCCCeEEEEcCC
Confidence            34556667788999999998 7888888999999999877  56777788889999999999988877778999999997


Q ss_pred             CCeEEEEecC-----CCCeeEEEeecCCeEEEEECC-Ccee--------c-cccceeeeeeeCCCCCCCceEEEecCCCC
Q 021399           83 TGAQLFTFNF-----DSPARSVDFAVGDKLAVITTD-PFME--------L-NSAIHVKRIARDPADQGGESVLILKGPQG  147 (313)
Q Consensus        83 ~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~-~~~~--------~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  147 (313)
                      +++.......     ...+..+.+.+++.+.+.... ....        . .....++.+.  .   .+. ...+..+..
T Consensus        99 ~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~--~---~g~-~~~~~~~~~  172 (296)
T 3e5z_A           99 GGEWESIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLA--P---DGT-LSAPIRDRV  172 (296)
T ss_dssp             TCCEEEEECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEEC--T---TSC-EEEEECCCS
T ss_pred             CCcEEEEeeccCCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEEC--C---CCC-EEEeecCCC
Confidence            7765433221     123345677777766554211 0000        0 0001222221  1   111 223344555


Q ss_pred             ceEEEEEccCCCEEEEeeCCCeEEEEECC-CCce---eeecccccCceeceEEEEECCCCCEEEEeeCCCcEEEEECCCC
Q 021399          148 RINRAVWGPLNRTIISAGEDAIVRIWDTE-TGKL---LKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTL  223 (313)
Q Consensus       148 ~i~~~~~~~~~~~i~t~~~d~~i~lwd~~-~~~~---~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~dg~i~iwd~~~~  223 (313)
                      ..+.++|+|+++.+++.+.++.|++||+. +++.   ...+   ..+...+..++++++|+..++.  ++.|.+||.+ +
T Consensus       173 ~~~gi~~s~dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~---~~~~~~p~~i~~d~~G~l~v~~--~~~v~~~~~~-g  246 (296)
T 3e5z_A          173 KPNGLAFLPSGNLLVSDTGDNATHRYCLNARGETEYQGVHF---TVEPGKTDGLRVDAGGLIWASA--GDGVHVLTPD-G  246 (296)
T ss_dssp             SEEEEEECTTSCEEEEETTTTEEEEEEECSSSCEEEEEEEE---CCSSSCCCSEEEBTTSCEEEEE--TTEEEEECTT-S
T ss_pred             CCccEEECCCCCEEEEeCCCCeEEEEEECCCCcCcCCCeEe---eCCCCCCCeEEECCCCCEEEEc--CCeEEEECCC-C
Confidence            67889999999988777788999999986 4443   1222   1244556789999999876666  7899999987 7


Q ss_pred             cEEEEEecCCceeEEEe-ccCCCEEEEccc
Q 021399          224 ELIKTYVTERPVNAVTM-SPLLDHVVLGGG  252 (313)
Q Consensus       224 ~~~~~~~~~~~~~~~~~-~p~~~~~~~~~~  252 (313)
                      +.+..+..+..+.+++| .|+++.++++..
T Consensus       247 ~~~~~~~~~~~~~~~~f~~~d~~~L~v~t~  276 (296)
T 3e5z_A          247 DELGRVLTPQTTSNLCFGGPEGRTLYMTVS  276 (296)
T ss_dssp             CEEEEEECSSCCCEEEEESTTSCEEEEEET
T ss_pred             CEEEEEECCCCceeEEEECCCCCEEEEEcC
Confidence            77777764434888999 588888887653

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=99.70  E-value=8.9e-16  Score=144.62  Aligned_cols=281  Identities=8%  Similarity=0.004  Sum_probs=163.1

Q ss_pred             EEEEccCCCEEEEeeCC---------CCeEEEeCCCCcEEEEecCCCCceEEEEECCCCCeEEEeeCCCcEEEEECCCCe
Q 021399           15 YLKYNKDGDLLFSCAKD---------HTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGA   85 (313)
Q Consensus        15 ~~~fs~~g~~l~s~s~d---------~~i~iw~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~v~vWd~~~~~   85 (313)
                      .+.|||||++|+.++.+         +.+.+||+++++.. .+..|.+.+...+|||||+.++.+ .|+.|++||+.+++
T Consensus        66 ~~~~Spdg~~l~~~~~~~~~~r~~~~~~~~~~d~~~~~~~-~l~~~~~~~~~~~~SPdG~~la~~-~~~~i~~~~~~~~~  143 (740)
T 4a5s_A           66 DYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQLI-TEERIPNNTQWVTWSPVGHKLAYV-WNNDIYVKIEPNLP  143 (740)
T ss_dssp             EEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEEC-CSSCCCTTEEEEEECSSTTCEEEE-ETTEEEEESSTTSC
T ss_pred             ceEECCCCCEEEEEECCeeeEEEccceEEEEEECCCCcEE-EcccCCCcceeeEECCCCCEEEEE-ECCeEEEEECCCCc
Confidence            47889999999999887         45569999998754 577788899999999999998887 57899999998877


Q ss_pred             EEEEecCCC-------------------CeeEEEeecCCeEEEEEC-CCc----eecc--cc-----ceeeeeeeCC---
Q 021399           86 QLFTFNFDS-------------------PARSVDFAVGDKLAVITT-DPF----MELN--SA-----IHVKRIARDP---  131 (313)
Q Consensus        86 ~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~-~~~----~~~~--~~-----~~~~~~~~~~---  131 (313)
                      .........                   ....+.|+|+++.++... +..    +.+.  ..     .....+....   
T Consensus       144 ~~~lt~~g~~~~~~~g~~~~v~~ee~~~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~  223 (740)
T 4a5s_A          144 SYRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGA  223 (740)
T ss_dssp             CEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTS
T ss_pred             eEEEcCCCCccceecCcccccccchhcCCCcceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcC
Confidence            543321111                   112477999877555432 211    0000  00     0000000000   


Q ss_pred             ----------CCCC---Cc--eEEEec------CCCCceEEEEEccCCCEEEEee----CCCeEEEEECCCCc----eee
Q 021399          132 ----------ADQG---GE--SVLILK------GPQGRINRAVWGPLNRTIISAG----EDAIVRIWDTETGK----LLK  182 (313)
Q Consensus       132 ----------~~~~---~~--~~~~~~------~~~~~i~~~~~~~~~~~i~t~~----~d~~i~lwd~~~~~----~~~  182 (313)
                                ...+   +.  ....+.      ++...+..+.|+|+++.++...    .+..|++||+.+++    +..
T Consensus       224 ~~~~~~l~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~  303 (740)
T 4a5s_A          224 VNPTVKFFVVNTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGRWNCLV  303 (740)
T ss_dssp             CCCEEEEEEEETTSCCSSSCCCEEEECCCHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTTTEEEECG
T ss_pred             cCCeeEEEEEECCCCCCCCcceEEEecCCccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCccccceeE
Confidence                      0001   10  122222      2566688999999998666543    34579999998876    221


Q ss_pred             eccc-ccCceeceE-----EEEECCCCCEEE-EeeC-C--CcEEEEECCCCcEEEEEecCCceeEEEeccCCCEEEEccc
Q 021399          183 ESDK-ETGHKKTIT-----SLAKAADGSHFL-TGSL-D--KSAKLWDARTLELIKTYVTERPVNAVTMSPLLDHVVLGGG  252 (313)
Q Consensus       183 ~~~~-~~~h~~~v~-----~~~~s~~~~~l~-s~s~-d--g~i~iwd~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~  252 (313)
                      .... ...|...+.     ..+|+|||+.|+ ..+. +  ..|.+||+.++++.........+..+. .++++.++..+.
T Consensus       304 ~~~l~~~~~~~~v~~~~~~~p~fspDG~~l~~~~s~~~G~~~l~~~~~~~~~~~~lT~g~~~v~~~~-~~d~~~i~f~~~  382 (740)
T 4a5s_A          304 ARQHIEMSTTGWVGRFRPSEPHFTLDGNSFYKIISNEEGYRHICYFQIDKKDCTFITKGTWEVIGIE-ALTSDYLYYISN  382 (740)
T ss_dssp             GGCEEEECSSSCSSSSSCCCCEECTTSSEEEEEEECTTSCEEEEEEETTCSSCEESCCSSSCEEEEE-EECSSEEEEEES
T ss_pred             EEEeeeccCCceEccCcCCCceEcCCCCEEEEEEEcCCCceEEEEEECCCCceEecccCCEEEEEEE-EEeCCEEEEEEe
Confidence            1100 123444443     678999999877 6653 3  468889998877654333333444433 244666665543


Q ss_pred             c--c---CceeEeeccCCCceeeeeeehhhhhhhc-cccccccceeEEEECCCCCeeEEEE
Q 021399          253 Q--D---ASAVTTTDHRAGKFEAKFFDKILQEEIG-GVKGHFGPINALAFNPDGKRYGFLL  307 (313)
Q Consensus       253 ~--~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~h~~~V~~~~fspdgk~~~~~~  307 (313)
                      .  +   ...++..+...+..         .+++. .+.+....+...+|||||+++++..
T Consensus       383 ~~~~~~~~~~ly~v~~~g~~~---------~~~lt~~~~~~~~~~~~~~~S~dg~~~~~~~  434 (740)
T 4a5s_A          383 EYKGMPGGRNLYKIQLIDYTK---------VTCLSCELNPERCQYYSVSFSKEAKYYQLRC  434 (740)
T ss_dssp             CGGGCTTCBEEEEEETTEEEE---------EEESSTTTSTTTBCBEEEEECTTSSEEEEEE
T ss_pred             cCCCCCceeEEEEEECCCCCc---------ceeeccccCCCCCceEEEEECCCCCEEEEEe
Confidence            2  1   11222222111000         00111 1112345788999999999887654

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=99.70  E-value=1.4e-15  Score=131.99  Aligned_cols=240  Identities=11%  Similarity=0.014  Sum_probs=152.3

Q ss_pred             ccccccceeEEEEccCCCEEEEeeCCCCeEEEeCCCCcEEEEecCCCCceEEEE--ECCCCCeEEE--------------
Q 021399            6 MKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCD--VSRDSMTLIT--------------   69 (313)
Q Consensus         6 l~~h~~~v~~~~fs~~g~~l~s~s~d~~i~iw~~~~~~~~~~~~~H~~~V~~~~--~~~~~~~l~s--------------   69 (313)
                      ..+|...+..+.|+|||++|+.++.++.+++||+.+++....+..+.+.+....  ++++++.++.              
T Consensus        76 t~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~  155 (388)
T 3pe7_A           76 TEGRGDNTFGGFLSPDDDALFYVKDGRNLMRVDLATLEENVVYQVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDW  155 (388)
T ss_dssp             CCSSCBCSSSCEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSH
T ss_pred             eeCCCCCccceEEcCCCCEEEEEeCCCeEEEEECCCCcceeeeechhhcccccceeECCCCCeeccccccCccccccccc
Confidence            345555556788999999999999999999999999988777777777665444  4899988763              


Q ss_pred             --------eeCCCcEEEEECCCCeEEEEecCCCCeeEEEeec-CCeEEEEECCCceeccccceeeeeeeCCCCCCCceEE
Q 021399           70 --------GSADQTAKLWNVETGAQLFTFNFDSPARSVDFAV-GDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVL  140 (313)
Q Consensus        70 --------~s~D~~v~vWd~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  140 (313)
                              .+.+..|.+||+.+++.............+.|+| +++.++....... ......++.+..+     +....
T Consensus       156 ~~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~sp~dg~~l~~~~~~~~-~~~~~~l~~~d~~-----~~~~~  229 (388)
T 3pe7_A          156 KKFHEFYFTKPCCRLMRVDLKTGESTVILQENQWLGHPIYRPYDDSTVAFCHEGPH-DLVDARMWLINED-----GTNMR  229 (388)
T ss_dssp             HHHHHHGGGCCCEEEEEEETTTCCEEEEEEESSCEEEEEEETTEEEEEEEEECSCT-TTSSCSEEEEETT-----SCCCE
T ss_pred             chhhhhhccCCcceEEEEECCCCceEEeecCCccccccEECCCCCCEEEEEEecCC-CCCcceEEEEeCC-----CCceE
Confidence                    3355789999999987766555555677888999 7765554332100 0001112211110     11122


Q ss_pred             EecCCC--CceEEEEEccCCCEEEEeeCC-----CeEEEEECCCCceeeecccccCceec---eEEEEECCCCCEEEEe-
Q 021399          141 ILKGPQ--GRINRAVWGPLNRTIISAGED-----AIVRIWDTETGKLLKESDKETGHKKT---ITSLAKAADGSHFLTG-  209 (313)
Q Consensus       141 ~~~~~~--~~i~~~~~~~~~~~i~t~~~d-----~~i~lwd~~~~~~~~~~~~~~~h~~~---v~~~~~s~~~~~l~s~-  209 (313)
                      .+..+.  ..+....|+|+|+.|+..+.+     ..|++||+.+++... +....++...   ....+|+|||+.|+.. 
T Consensus       230 ~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~-l~~~~~~~~~~~~~~~~~~spdg~~l~~~~  308 (388)
T 3pe7_A          230 KVKTHAEGESCTHEFWVPDGSALVYVSYLKGSPDRFIYSADPETLENRQ-LTSMPACSHLMSNYDGSLMVGDGSDAPVDV  308 (388)
T ss_dssp             ESCCCCTTEEEEEEEECTTSSCEEEEEEETTCCCEEEEEECTTTCCEEE-EEEECCEEEEEECTTSSEEEEEECCC----
T ss_pred             EeeeCCCCcccccceECCCCCEEEEEecCCCCCcceEEEEecCCCceEE-EEcCCCceeeeecCCCCeEccCCCcceeEe
Confidence            222233  246778999999977664431     249999998876422 1111121111   1123689999988754 


Q ss_pred             --------eCCCcEEEEECCCCcEEEEEecCC-----------ceeEEEeccCCCEEEEccc
Q 021399          210 --------SLDKSAKLWDARTLELIKTYVTER-----------PVNAVTMSPLLDHVVLGGG  252 (313)
Q Consensus       210 --------s~dg~i~iwd~~~~~~~~~~~~~~-----------~~~~~~~~p~~~~~~~~~~  252 (313)
                              ..+..|.+||+++++...-.....           .+..++|+|++..++.++.
T Consensus       309 ~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~spDg~~l~~~s~  370 (388)
T 3pe7_A          309 QDDSGYKIENDPFLYVFNMKNGTQHRVARHDTSWKVFEGDRQVTHPHPSFTPDDKQILFTSD  370 (388)
T ss_dssp             --------CCCCEEEEEETTTTEEEEEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEEC
T ss_pred             eeccccccCCCCEEEEEeccCCceEEeccccCcccccccccccCCCCccCCCCCCEEEEEec
Confidence                    446689999999877643333333           3678899999998887653

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=99.70  E-value=2.7e-15  Score=139.53  Aligned_cols=287  Identities=12%  Similarity=-0.020  Sum_probs=170.9

Q ss_pred             ccccccccceeEEEEccCCCEEEEe--eCCCCeEEEeCCCCcEEEEecCCCCceE---------EEEEC--CCCCe-EEE
Q 021399            4 ILMKGHERPLTYLKYNKDGDLLFSC--AKDHTPTVWFADNGERLGTYRGHNGAVW---------CCDVS--RDSMT-LIT   69 (313)
Q Consensus         4 ~~l~~h~~~v~~~~fs~~g~~l~s~--s~d~~i~iw~~~~~~~~~~~~~H~~~V~---------~~~~~--~~~~~-l~s   69 (313)
                      ..+.+|...+..++|++++-++++.  +.++...||....+.....+..|...+.         ...|+  |||+. ++.
T Consensus        17 ~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~SPDg~~~la~   96 (662)
T 3azo_A           17 ALVASRSGRPACVGAVGDEVWWVAPRPAEAGRATLVRRRADGAEESALPAPWNVRNRVFEYSGFPWAGVPRPAGGPLLVF   96 (662)
T ss_dssp             HHHHHTCSCCEEEEEETTEEEEEEEETTTTTEEEEEEECTTSCEEESSCTTCCBCCCGGGTCCCCEEEECCSSSSCEEEE
T ss_pred             HHHhhcCCccceeEEcCCeEEEEecCcccCCcEEEEEECCCCCcceeCCCCccccccccccCCccceeeeecCCCeEEEE
Confidence            3577899999999999887777777  5688999998655555667777776665         55555  99987 655


Q ss_pred             ee-CCCcEEEEECC--C-CeEEEEec-----CCCCeeEEEeecCCeEEEEECCCce-----eccccceeeeeeeCCCCCC
Q 021399           70 GS-ADQTAKLWNVE--T-GAQLFTFN-----FDSPARSVDFAVGDKLAVITTDPFM-----ELNSAIHVKRIARDPADQG  135 (313)
Q Consensus        70 ~s-~D~~v~vWd~~--~-~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~  135 (313)
                      ++ .+..|.+|++.  + ++......     .......+.|+|+++.++.......     .....+..+++........
T Consensus        97 ~~~~~~~l~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~  176 (662)
T 3azo_A           97 THFGDQRLYAFEPDAPGGAVPRPLTPVSAVGGGLRWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAADR  176 (662)
T ss_dssp             EBTTTCCEEEECTTSTTCCCCEECSCCCCSTTCEEEEEEEEETTTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTCG
T ss_pred             EECCCCeEEEEcCCCCCCCCCEeccCCccCCCCccccCcEECCCCCEEEEEEecccCCCCCCceeEEEEEECCCCccccC
Confidence            44 35667777765  3 44332222     1224567789988765554432100     0001111111110000000


Q ss_pred             CceEEEec-CCCCceEEEEEccCCCEEEEeeCC--------CeEEEEECC-CCc--eeeecccccCceeceEEEEECCCC
Q 021399          136 GESVLILK-GPQGRINRAVWGPLNRTIISAGED--------AIVRIWDTE-TGK--LLKESDKETGHKKTITSLAKAADG  203 (313)
Q Consensus       136 ~~~~~~~~-~~~~~i~~~~~~~~~~~i~t~~~d--------~~i~lwd~~-~~~--~~~~~~~~~~h~~~v~~~~~s~~~  203 (313)
                      +. ...+. .+...+..+.|+|+|++|+.++.+        ..|++||+. ++.  ....+.  .+|...+..++|+|||
T Consensus       177 ~~-~~~l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~--~~~~~~~~~~~~spdg  253 (662)
T 3azo_A          177 SA-VRELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLL--GGPEEAIAQAEWAPDG  253 (662)
T ss_dssp             GG-SEESSCSCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEE--EETTBCEEEEEECTTS
T ss_pred             Cc-eeEEEecCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeC--CCCCceEcceEECCCC
Confidence            12 22333 445667788999999999887754        479999998 562  222222  2346788999999999


Q ss_pred             CEEEEeeCCC--cEEEEECCCCcEEEEEecCCc---------eeEEEeccCCCEEEEcccccCceeEeeccCCCceeeee
Q 021399          204 SHFLTGSLDK--SAKLWDARTLELIKTYVTERP---------VNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKF  272 (313)
Q Consensus       204 ~~l~s~s~dg--~i~iwd~~~~~~~~~~~~~~~---------~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  272 (313)
                      +.+++++.|+  .|.+||+++++..........         +..++|+|++..++.+.. ...            .+..
T Consensus       254 ~l~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~-~~~------------~l~~  320 (662)
T 3azo_A          254 SLIVATDRTGWWNLHRVDPATGAATQLCRREEEFAGPLWTPGMRWFAPLANGLIAVVHGK-GAA------------VLGI  320 (662)
T ss_dssp             CEEEEECTTSSCEEEEECTTTCCEEESSCCSSBSSCCCCSTTCCSEEECTTSCEEEEEBS-SSC------------EEEE
T ss_pred             eEEEEECCCCCeEEEEEECCCCceeecccccccccCccccccCceEeEeCCCEEEEEEEc-Ccc------------EEEE
Confidence            9888888888  666677767765443332222         356777777665544432 221            2222


Q ss_pred             eehhhhhhhccccccccceeEEEECCCCCeeEEEEE
Q 021399          273 FDKILQEEIGGVKGHFGPINALAFNPDGKRYGFLLL  308 (313)
Q Consensus       273 ~~~~~~~~~~~~~~h~~~V~~~~fspdgk~~~~~~~  308 (313)
                      +|...++ +..+..|.+.+..+. ++|++.+.|...
T Consensus       321 ~d~~~~~-~~~l~~~~~~~~~~~-s~~~~~~~~~~~  354 (662)
T 3azo_A          321 LDPESGE-LVDAAGPWTEWAATL-TVSGTRAVGVAA  354 (662)
T ss_dssp             EETTTTE-EEECCSSCCEEEEEE-EEETTEEEEEEE
T ss_pred             EECCCCc-EEEecCCCCeEEEEE-ecCCCEEEEEEc
Confidence            2333222 344556777777662 667777777654

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=99.69  E-value=1.8e-14  Score=119.44  Aligned_cols=191  Identities=12%  Similarity=0.089  Sum_probs=142.2

Q ss_pred             CCCEEEEeeCCCCeEEEeCCCCcEEEEecCCC-CceEEEEECCCCCeEEEeeCCCcEEEEECCCCeEEEEecCCCCeeEE
Q 021399           21 DGDLLFSCAKDHTPTVWFADNGERLGTYRGHN-GAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSV   99 (313)
Q Consensus        21 ~g~~l~s~s~d~~i~iw~~~~~~~~~~~~~H~-~~V~~~~~~~~~~~l~s~s~D~~v~vWd~~~~~~~~~~~~~~~~~~~   99 (313)
                      .++.|++++.|+.|.+||.++++.+.++..+. ..+.++++.|+|++++  +.++.|+.||. +++.++.+...      
T Consensus         4 ~~~~lv~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~~~~~~pdG~ilv--s~~~~V~~~d~-~G~~~W~~~~~------   74 (276)
T 3no2_A            4 PQHLLVGGSGWNKIAIINKDTKEIVWEYPLEKGWECNSVAATKAGEILF--SYSKGAKMITR-DGRELWNIAAP------   74 (276)
T ss_dssp             CCEEEEECTTCSEEEEEETTTTEEEEEEECCTTCCCCEEEECTTSCEEE--ECBSEEEEECT-TSCEEEEEECC------
T ss_pred             CCcEEEeeCCCCEEEEEECCCCeEEEEeCCCccCCCcCeEECCCCCEEE--eCCCCEEEECC-CCCEEEEEcCC------
Confidence            46899999999999999999999999998876 4788999999999888  45778999998 67766544311      


Q ss_pred             EeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEccCCCEEEEeeC-CCeEEEEECCCC
Q 021399          100 DFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGE-DAIVRIWDTETG  178 (313)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~t~~~-d~~i~lwd~~~~  178 (313)
                                                                   ....+.++.+.++++.+++.+. ++.|..+|. ++
T Consensus        75 ---------------------------------------------~~~~~~~~~~~~dG~~lv~~~~~~~~v~~vd~-~G  108 (276)
T 3no2_A           75 ---------------------------------------------AGCEMQTARILPDGNALVAWCGHPSTILEVNM-KG  108 (276)
T ss_dssp             ---------------------------------------------TTCEEEEEEECTTSCEEEEEESTTEEEEEECT-TS
T ss_pred             ---------------------------------------------CCccccccEECCCCCEEEEecCCCCEEEEEeC-CC
Confidence                                                         0113445667788888888776 777888886 56


Q ss_pred             ceeeecccc---cCceeceEEEEECCCCCEEEEeeCCCcEEEEECCCCcEEEEEecCCceeEEEeccCCCEEEEcccccC
Q 021399          179 KLLKESDKE---TGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTERPVNAVTMSPLLDHVVLGGGQDA  255 (313)
Q Consensus       179 ~~~~~~~~~---~~h~~~v~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~  255 (313)
                      +.+.++...   ..+......++..++|+++++.+.++.|..||.+ ++.+.++........+...+.++.++++..  .
T Consensus       109 k~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~~~~~v~~~d~~-G~~~w~~~~~~~~~~~~~~~~g~~~v~~~~--~  185 (276)
T 3no2_A          109 EVLSKTEFETGIERPHAQFRQINKNKKGNYLVPLFATSEVREIAPN-GQLLNSVKLSGTPFSSAFLDNGDCLVACGD--A  185 (276)
T ss_dssp             CEEEEEEECCSCSSGGGSCSCCEECTTSCEEEEETTTTEEEEECTT-SCEEEEEECSSCCCEEEECTTSCEEEECBT--T
T ss_pred             CEEEEEeccCCCCcccccccCceECCCCCEEEEecCCCEEEEECCC-CCEEEEEECCCCccceeEcCCCCEEEEeCC--C
Confidence            655544321   1222345566789999999999999999999998 999988876666777888888877665433  3


Q ss_pred             ceeEeeccCCCcee
Q 021399          256 SAVTTTDHRAGKFE  269 (313)
Q Consensus       256 ~~~~~~~~~~~~~~  269 (313)
                      ..+..+|...++..
T Consensus       186 ~~v~~~d~~tG~~~  199 (276)
T 3no2_A          186 HCFVQLNLESNRIV  199 (276)
T ss_dssp             SEEEEECTTTCCEE
T ss_pred             CeEEEEeCcCCcEE
Confidence            45777787766553

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=99.69  E-value=6.8e-15  Score=137.98  Aligned_cols=236  Identities=11%  Similarity=-0.003  Sum_probs=150.0

Q ss_pred             ccccceeEEEEccCCCEEEEeeCCC-----CeEEEeCCCCcEEEEecCCCCceEEEEECCCCCeEEEeeCCCc-------
Q 021399            8 GHERPLTYLKYNKDGDLLFSCAKDH-----TPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQT-------   75 (313)
Q Consensus         8 ~h~~~v~~~~fs~~g~~l~s~s~d~-----~i~iw~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~-------   75 (313)
                      +|...+..++|||||++|+.++.++     .|++||+++++.+.....+ ..+..++|+|||+.|+.++.|+.       
T Consensus       122 ~~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~~~~-~~~~~~~wspDg~~l~~~~~~~~~~~~~~~  200 (710)
T 2xdw_A          122 DGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLER-VKFSCMAWTHDGKGMFYNAYPQQDGKSDGT  200 (710)
T ss_dssp             TSCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEE-ECSCCEEECTTSSEEEEEECCCCSSCCSSS
T ss_pred             CCCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCcccccC-cccceEEEEeCCCEEEEEEECCcccccccc
Confidence            3445678899999999999776543     8999999999876532222 22667899999999988887765       


Q ss_pred             ---------EEEEECCCCeEEEEecCCCCeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCC
Q 021399           76 ---------AKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQ  146 (313)
Q Consensus        76 ---------v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  146 (313)
                               |++|++.+++..                                                ...+.....+.
T Consensus       201 ~~~~~~~~~v~~~~l~t~~~~------------------------------------------------~~~v~~~~~~~  232 (710)
T 2xdw_A          201 ETSTNLHQKLYYHVLGTDQSE------------------------------------------------DILCAEFPDEP  232 (710)
T ss_dssp             CCCCCCCCEEEEEETTSCGGG------------------------------------------------CEEEECCTTCT
T ss_pred             ccccCCCCEEEEEECCCCccc------------------------------------------------ceEEeccCCCC
Confidence                     777776654210                                                00000011123


Q ss_pred             CceEEEEEccCCCEEEEeeC-----CCeEEEEECCC------Cc-eeeecccccCceeceEEEEECCCCCEEEEeeCC--
Q 021399          147 GRINRAVWGPLNRTIISAGE-----DAIVRIWDTET------GK-LLKESDKETGHKKTITSLAKAADGSHFLTGSLD--  212 (313)
Q Consensus       147 ~~i~~~~~~~~~~~i~t~~~-----d~~i~lwd~~~------~~-~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d--  212 (313)
                      ..+..+.|+|++++|+..+.     +..|++||+.+      +. ....+.   .+...+.. .++++|+.|+..+.+  
T Consensus       233 ~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~l~---~~~~~~~~-~~s~dg~~l~~~s~~~~  308 (710)
T 2xdw_A          233 KWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWVKLI---DNFEGEYD-YVTNEGTVFTFKTNRHS  308 (710)
T ss_dssp             TCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEEEE---CSSSSCEE-EEEEETTEEEEEECTTC
T ss_pred             eEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECcccccccCCccceEEee---CCCCcEEE-EEeccCCEEEEEECCCC
Confidence            34567889999998887764     67899999876      42 233332   23333443 477888887766653  


Q ss_pred             --CcEEEEECCCCc--EEEEEecC---CceeEEEeccCCCEEEEcccccCceeEeeccCCCceeeeeeehhhhhhhcccc
Q 021399          213 --KSAKLWDARTLE--LIKTYVTE---RPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVK  285 (313)
Q Consensus       213 --g~i~iwd~~~~~--~~~~~~~~---~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  285 (313)
                        +.|.+||++++.  ....+..+   ..+..++|++ ++.++++...++.           ..+..|+..+++.+..+.
T Consensus       309 ~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~-~~~lv~~~~~~g~-----------~~l~~~~~~~g~~~~~l~  376 (710)
T 2xdw_A          309 PNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVR-SNFLVLCYLHDVK-----------NTLQLHDLATGALLKIFP  376 (710)
T ss_dssp             TTCEEEEEETTSCCGGGCEEEECCCSSCEEEEEEEET-TTEEEEEEEETTE-----------EEEEEEETTTCCEEEEEC
T ss_pred             CCCEEEEEeCCCCCcccceeccCCCCCCeEEEEEEEc-CCEEEEEEEECCE-----------EEEEEEECCCCCEEEecC
Confidence              369999998764  12333322   2577788875 4455555443332           223444443344334455


Q ss_pred             ccccceeEEEECCCCCeeEEEEE
Q 021399          286 GHFGPINALAFNPDGKRYGFLLL  308 (313)
Q Consensus       286 ~h~~~V~~~~fspdgk~~~~~~~  308 (313)
                      .+.+.|..++++||++.+.|...
T Consensus       377 ~~~~~v~~~~~s~d~~~l~~~~s  399 (710)
T 2xdw_A          377 LEVGSVVGYSGQKKDTEIFYQFT  399 (710)
T ss_dssp             CCSSEEEEEECCTTCSEEEEEEE
T ss_pred             CCCceEEEEecCCCCCEEEEEEe
Confidence            56778999999999998877643

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=99.68  E-value=1.2e-13  Score=117.29  Aligned_cols=239  Identities=10%  Similarity=0.026  Sum_probs=159.0

Q ss_pred             ccccccceeEEEEccCCCEEEEeeCCCCeEEEeCCCCcEEEEecCCCCceEEEEECCCCCeEEEeeCC----CcEEEEEC
Q 021399            6 MKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSAD----QTAKLWNV   81 (313)
Q Consensus         6 l~~h~~~v~~~~fs~~g~~l~s~s~d~~i~iw~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D----~~v~vWd~   81 (313)
                      +.++...+.+++|+++|++++++..++.|.+||.++++.......+...+.+++++++++++++...+    +.|.+||.
T Consensus        40 ~~~~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~  119 (333)
T 2dg1_A           40 ISKKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATE  119 (333)
T ss_dssp             EESSCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECT
T ss_pred             EeccCccccCcEECCCCCEEEEECCCCEEEEEeCCCCcEEEEeeCCCCCcceEEECCCCcEEEEeCCCCCCCceEEEEeC
Confidence            44566678899999999988888889999999998887665554567789999999999988877666    68999999


Q ss_pred             CCCeEEEEec---CCCCeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEccCC
Q 021399           82 ETGAQLFTFN---FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLN  158 (313)
Q Consensus        82 ~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~  158 (313)
                      +++.......   ....+..+.+.+++.+.+....... ......++.+.  ..  .+. ...+.........++|+|++
T Consensus       120 ~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~-~~~~~~l~~~~--~~--~~~-~~~~~~~~~~~~~i~~~~dg  193 (333)
T 2dg1_A          120 NGDNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYS-TNPLGGVYYVS--PD--FRT-VTPIIQNISVANGIALSTDE  193 (333)
T ss_dssp             TSCSCEEEECSSSSCCCEEEEEECTTSCEEEEECCCBT-TBCCEEEEEEC--TT--SCC-EEEEEEEESSEEEEEECTTS
T ss_pred             CCCEEEEEEccCccCCcccceEECCCCCEEEEeccccc-cCCCceEEEEe--CC--CCE-EEEeecCCCcccceEECCCC
Confidence            8876543322   2234667778877766665432100 00011122211  11  111 11111122346788999999


Q ss_pred             CEE-EEeeCCCeEEEEECCC-Cceeeec-----ccccCceeceEEEEECCCCCEEEEeeCCCcEEEEECCCCcEEEEEec
Q 021399          159 RTI-ISAGEDAIVRIWDTET-GKLLKES-----DKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVT  231 (313)
Q Consensus       159 ~~i-~t~~~d~~i~lwd~~~-~~~~~~~-----~~~~~h~~~v~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~  231 (313)
                      +.+ ++...++.|.+||+.. +..+..+     ....++ ..+..++++++|+..++...++.|.+||. .++.+..+..
T Consensus       194 ~~l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~-~~~~~i~~d~~G~l~v~~~~~~~v~~~d~-~g~~~~~~~~  271 (333)
T 2dg1_A          194 KVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGH-EGPDSCCIDSDDNLYVAMYGQGRVLVFNK-RGYPIGQILI  271 (333)
T ss_dssp             SEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSS-SEEEEEEEBTTCCEEEEEETTTEEEEECT-TSCEEEEEEC
T ss_pred             CEEEEEeCCCCeEEEEEecCCCcCcccccceEEEecCCC-CCCCceEECCCCCEEEEEcCCCEEEEECC-CCCEEEEEEc
Confidence            855 4555678999999863 3322211     011122 35778999999998888888899999998 4666666654


Q ss_pred             CC-------ceeEEEeccCCCEEEEccc
Q 021399          232 ER-------PVNAVTMSPLLDHVVLGGG  252 (313)
Q Consensus       232 ~~-------~~~~~~~~p~~~~~~~~~~  252 (313)
                      ..       .+..++|+|+++.++++..
T Consensus       272 ~~~~~g~~~~~~~~~~~~dg~~L~v~~~  299 (333)
T 2dg1_A          272 PGRDEGHMLRSTHPQFIPGTNQLIICSN  299 (333)
T ss_dssp             TTGGGTCSCBCCEEEECTTSCEEEEEEE
T ss_pred             CCCccccccCcceEEECCCCCEEEEEeC
Confidence            32       4788999999888876644

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=99.66  E-value=6.4e-14  Score=119.06  Aligned_cols=275  Identities=11%  Similarity=0.010  Sum_probs=169.7

Q ss_pred             ccceeEEEEccCCCEEEEeeCCCCeEEEeCCCCcEEEEecCCCCceEEEEECCCCCeEEEeeCCCcEEEEECCCCeEEEE
Q 021399           10 ERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFT   89 (313)
Q Consensus        10 ~~~v~~~~fs~~g~~l~s~s~d~~i~iw~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~v~vWd~~~~~~~~~   89 (313)
                      ...|.++.|++++..+++.+.++.++.|   .++....+..+...+.+++|++++++++++..++.|.+||+.+++....
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~~~~~   81 (333)
T 2dg1_A            5 QQDLPTLFYSGKSNSAVPIISESELQTI---TAEPWLEISKKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRP   81 (333)
T ss_dssp             -CCCCBCCSCGGGGCSSCCCCGGGSCEE---ECEEEEEEESSCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEE
T ss_pred             ccccceeeecCCccceeEEeecccCccc---ccceeEEEeccCccccCcEECCCCCEEEEECCCCEEEEEeCCCCcEEEE
Confidence            3457889999999988888889999999   4556677778878889999999999888888899999999988776544


Q ss_pred             e-cCCCCeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEec--CCCCceEEEEEccCCCEEEEeeC
Q 021399           90 F-NFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILK--GPQGRINRAVWGPLNRTIISAGE  166 (313)
Q Consensus        90 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~i~~~~~~~~~~~i~t~~~  166 (313)
                      . .....+..+.+.+++.+.+.......   ....+..+  +..  .......+.  .+...++.+.++|+++.+++...
T Consensus        82 ~~~~~~~~~~i~~~~dg~l~v~~~~~~~---~~~~i~~~--d~~--~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~  154 (333)
T 2dg1_A           82 FVSHKANPAAIKIHKDGRLFVCYLGDFK---STGGIFAA--TEN--GDNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFR  154 (333)
T ss_dssp             EECSSSSEEEEEECTTSCEEEEECTTSS---SCCEEEEE--CTT--SCSCEEEECSSSSCCCEEEEEECTTSCEEEEECC
T ss_pred             eeCCCCCcceEEECCCCcEEEEeCCCCC---CCceEEEE--eCC--CCEEEEEEccCccCCcccceEECCCCCEEEEecc
Confidence            3 33456778888887776665432200   00011111  111  111111111  23456888999999987776653


Q ss_pred             ------CCeEEEEECCCCceeeecccccCceeceEEEEECCCCCEE-EEeeCCCcEEEEECCC-CcEEEEE--------e
Q 021399          167 ------DAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHF-LTGSLDKSAKLWDART-LELIKTY--------V  230 (313)
Q Consensus       167 ------d~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l-~s~s~dg~i~iwd~~~-~~~~~~~--------~  230 (313)
                            .+.|..+|...++... +.   .+...+..++++|+|+.+ ++.+.++.|.+||+++ +..+..+        .
T Consensus       155 ~~~~~~~~~l~~~~~~~~~~~~-~~---~~~~~~~~i~~~~dg~~l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~  230 (333)
T 2dg1_A          155 GYSTNPLGGVYYVSPDFRTVTP-II---QNISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFT  230 (333)
T ss_dssp             CBTTBCCEEEEEECTTSCCEEE-EE---EEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECC
T ss_pred             ccccCCCceEEEEeCCCCEEEE-ee---cCCCcccceEECCCCCEEEEEeCCCCeEEEEEecCCCcCcccccceEEEecC
Confidence                  3567777766544322 21   123457889999999865 4555688999999964 3322211        1


Q ss_pred             cCCceeEEEeccCCCEEEEcccccCceeEeeccCCCceeeeeeehhhhhhhccccccccceeEEEECCCCCeeEEEE
Q 021399          231 TERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKRYGFLL  307 (313)
Q Consensus       231 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~fspdgk~~~~~~  307 (313)
                      ....+..+++++++...++..+  ...+..+|.. +.. +..+....     ...+|...+.+++|+|||+.+.+..
T Consensus       231 ~~~~~~~i~~d~~G~l~v~~~~--~~~v~~~d~~-g~~-~~~~~~~~-----~~~g~~~~~~~~~~~~dg~~L~v~~  298 (333)
T 2dg1_A          231 GHEGPDSCCIDSDDNLYVAMYG--QGRVLVFNKR-GYP-IGQILIPG-----RDEGHMLRSTHPQFIPGTNQLIICS  298 (333)
T ss_dssp             SSSEEEEEEEBTTCCEEEEEET--TTEEEEECTT-SCE-EEEEECTT-----GGGTCSCBCCEEEECTTSCEEEEEE
T ss_pred             CCCCCCceEECCCCCEEEEEcC--CCEEEEECCC-CCE-EEEEEcCC-----CccccccCcceEEECCCCCEEEEEe
Confidence            1135677899998864443322  2234445542 221 11111100     0012334789999999987765443

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=99.65  E-value=2.6e-14  Score=123.36  Aligned_cols=192  Identities=8%  Similarity=-0.004  Sum_probs=129.0

Q ss_pred             eeEEEEccCCCE--EEEee-------------CCCCeEEEeCC-CCcEEEEec----CCCCceEEEEECCCCCeEEEee-
Q 021399           13 LTYLKYNKDGDL--LFSCA-------------KDHTPTVWFAD-NGERLGTYR----GHNGAVWCCDVSRDSMTLITGS-   71 (313)
Q Consensus        13 v~~~~fs~~g~~--l~s~s-------------~d~~i~iw~~~-~~~~~~~~~----~H~~~V~~~~~~~~~~~l~s~s-   71 (313)
                      +.+++|+|||++  +++++             .++.+++|+++ +++....+.    .+...+.+++|+|||+++++++ 
T Consensus        85 ~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~  164 (365)
T 1jof_A           85 PRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADL  164 (365)
T ss_dssp             GGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEET
T ss_pred             CccEEECCCCCEEEEEEecCCcceeccceeecCCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEEEEcC
Confidence            566899999994  55653             68999999997 466544443    2556789999999999887765 


Q ss_pred             CCCcEEEEECC-CCeEEEEecCCCCeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceE
Q 021399           72 ADQTAKLWNVE-TGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRIN  150 (313)
Q Consensus        72 ~D~~v~vWd~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  150 (313)
                      .++.|++||+. +++......                                                .....+.....
T Consensus       165 ~~~~v~~~~~~~~g~~~~~~~------------------------------------------------~~~~~~g~~p~  196 (365)
T 1jof_A          165 TANKLWTHRKLASGEVELVGS------------------------------------------------VDAPDPGDHPR  196 (365)
T ss_dssp             TTTEEEEEEECTTSCEEEEEE------------------------------------------------EECSSTTCCEE
T ss_pred             CCCEEEEEEECCCCCEEEeee------------------------------------------------EecCCCCCCCC
Confidence            46899999987 554321100                                                00001123456


Q ss_pred             EEEEccCCCEEEEeeC-CCeEEEEECC--CCcee---eecccc----cCcee------ceEEEE-ECCCCCEEEEeeCCC
Q 021399          151 RAVWGPLNRTIISAGE-DAIVRIWDTE--TGKLL---KESDKE----TGHKK------TITSLA-KAADGSHFLTGSLDK  213 (313)
Q Consensus       151 ~~~~~~~~~~i~t~~~-d~~i~lwd~~--~~~~~---~~~~~~----~~h~~------~v~~~~-~s~~~~~l~s~s~dg  213 (313)
                      .++|+|+++++++++. ++.|.+|+..  +++..   ..+...    .+|..      .+..++ |+|||++|++++.+.
T Consensus       197 ~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~  276 (365)
T 1jof_A          197 WVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRAN  276 (365)
T ss_dssp             EEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEES
T ss_pred             EeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCcccccccccccccEEEECCCCCEEEEECCCC
Confidence            7889999998877764 7899999764  45432   111111    12232      588999 999999988776532


Q ss_pred             ------cEEEEECC-CCcEEEE---Ee-cCCceeEEEecc---CCCEEEEccc
Q 021399          214 ------SAKLWDAR-TLELIKT---YV-TERPVNAVTMSP---LLDHVVLGGG  252 (313)
Q Consensus       214 ------~i~iwd~~-~~~~~~~---~~-~~~~~~~~~~~p---~~~~~~~~~~  252 (313)
                            .|.+|+++ +++....   .. .......++|+|   +++.++++..
T Consensus       277 ~~~~~~~i~v~~~~~~g~~~~~~~~~~~~~~~~~~~a~sp~~~dg~~l~v~~~  329 (365)
T 1jof_A          277 KFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSDEWMAITDD  329 (365)
T ss_dssp             STTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCTTEEEEECS
T ss_pred             CCCCCCeEEEEEECCCCCEEEeeeeeecCCCCcccceecCCCcCCCEEEEEEc
Confidence                  89999986 5665432   22 233467889999   7888877654

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=99.65  E-value=2.4e-13  Score=116.13  Aligned_cols=210  Identities=10%  Similarity=0.002  Sum_probs=135.8

Q ss_pred             cceeEEEEccCCCEEEEeeCCC---C--eEEEeCCCCcEEEEecCCCCceEEEEECCCCCeEEEeeCC------------
Q 021399           11 RPLTYLKYNKDGDLLFSCAKDH---T--PTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSAD------------   73 (313)
Q Consensus        11 ~~v~~~~fs~~g~~l~s~s~d~---~--i~iw~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D------------   73 (313)
                      ..+..++|||||++|+..+.++   .  |.+|++++++.......+ . +..++|+|||+.|+.++.+            
T Consensus        59 ~~~~~~~~SpDg~~la~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~-~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~  136 (347)
T 2gop_A           59 ENATMPRISPDGKKIAFMRANEEKKVSEIWVADLETLSSKKILEAK-N-IRSLEWNEDSRKLLIVGFKRREDEDFIFEDD  136 (347)
T ss_dssp             ESCEEEEECTTSSEEEEEEEETTTTEEEEEEEETTTTEEEEEEEES-E-EEEEEECTTSSEEEEEEECCCC---------
T ss_pred             ccCCCeEECCCCCEEEEEEeccCCCcceEEEEECCCCceEEEEcCC-C-ccceeECCCCCEEEEEEccCCCcCCcEEEcc
Confidence            3567899999999999887642   3  777788887765444433 3 9999999999988777642            


Q ss_pred             ---------------CcEEEEECCCCeEEEEecCCCCeeEEEeecCCeEEEEECCCceec-cc-cceeeeeeeCCCCCCC
Q 021399           74 ---------------QTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMEL-NS-AIHVKRIARDPADQGG  136 (313)
Q Consensus        74 ---------------~~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~  136 (313)
                                     ..|.+||+.+++.+..+... ....+.|++++ +++......... .. ...++.+.      .+
T Consensus       137 ~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~l~~~-~~~~~~~spdg-~~~~~~~~~~~~~~~~~~~l~~~d------~~  208 (347)
T 2gop_A          137 VPAWFDDLGFFDGEKTTFWIFDTESEEVIEEFEKP-RFSSGIWHRDK-IVVNVPHREIIPQYFKFWDIYIWE------DG  208 (347)
T ss_dssp             CCCC---------CEEEEEEEETTTTEEEEEEEEE-TTCEEEEETTE-EEEEEECCCSSCCSSCCEEEEEEE------TT
T ss_pred             cceeecCcccccCccceEEEEECCCCeEEeeecCC-CcccccCCCCe-EEEEEecccccccccccccEEEeC------CC
Confidence                           57899999988762322223 66678888877 554432210000 00 11222221      12


Q ss_pred             ceEEEecCCCCceEEEEEccCCCEEEEeeCC--------CeEEEEECCCCceeeecccccCceeceEE-EEECCCCCEEE
Q 021399          137 ESVLILKGPQGRINRAVWGPLNRTIISAGED--------AIVRIWDTETGKLLKESDKETGHKKTITS-LAKAADGSHFL  207 (313)
Q Consensus       137 ~~~~~~~~~~~~i~~~~~~~~~~~i~t~~~d--------~~i~lwd~~~~~~~~~~~~~~~h~~~v~~-~~~s~~~~~l~  207 (313)
                      .. ..+..+ ..+..+  +|+|+.++.++.+        ..|.+||  +++. ..+.  ..+...+.. +.|+ |+ .++
T Consensus       209 ~~-~~l~~~-~~~~~~--spdg~~l~~~~~~~~~~~~~~~~l~~~d--~~~~-~~l~--~~~~~~~~~~~~~s-dg-~~~  277 (347)
T 2gop_A          209 KE-EKMFEK-VSFYAV--DSDGERILLYGKPEKKYMSEHNKLYIYD--GKEV-MGIL--DEVDRGVGQAKIKD-GK-VYF  277 (347)
T ss_dssp             EE-EEEEEE-ESEEEE--EECSSCEEEEECCSSSCCCSSCEEEEEC--SSCE-EESS--TTCCSEEEEEEEET-TE-EEE
T ss_pred             ce-EEeccC-cceeeE--CCCCCEEEEEEccccCCccccceEEEEC--CCce-Eecc--ccCCcccCCccEEc-Cc-EEE
Confidence            22 222222 334333  8999988877644        4688888  4443 2222  245567776 8999 88 899


Q ss_pred             EeeCCCcEEEEECCCCcEEEEEecCCceeEEEecc
Q 021399          208 TGSLDKSAKLWDARTLELIKTYVTERPVNAVTMSP  242 (313)
Q Consensus       208 s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~p  242 (313)
                      +++.++.+++| +.+++....+.....+..++|+|
T Consensus       278 ~~~~~~~~~l~-~~~g~~~~~~~~~~~v~~~~~s~  311 (347)
T 2gop_A          278 TLFEEGSVNLY-IWDGEIKPIAKGRHWIMGFDVDE  311 (347)
T ss_dssp             EEEETTEEEEE-EESSSEEEEECSSSEEEEEEESS
T ss_pred             EEecCCcEEEE-EcCCceEEEecCCCeEEeeeeeC
Confidence            99999999999 87766644444556788899998

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=99.63  E-value=5.6e-14  Score=121.97  Aligned_cols=226  Identities=12%  Similarity=-0.012  Sum_probs=143.3

Q ss_pred             eEEEEccCCCEEEEeeCCCCeEEEeCCCCcEEEEecCCCCceEE-------------------EEECCCCCeEEEe----
Q 021399           14 TYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWC-------------------CDVSRDSMTLITG----   70 (313)
Q Consensus        14 ~~~~fs~~g~~l~s~s~d~~i~iw~~~~~~~~~~~~~H~~~V~~-------------------~~~~~~~~~l~s~----   70 (313)
                      ..+.|+|||++|+.++.++.|++||+.+++....+..+......                   ++|+|+++.++.+    
T Consensus        84 ~~~~~spdg~~l~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~  163 (396)
T 3c5m_A           84 FGGFISTDERAFFYVKNELNLMKVDLETLEEQVIYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYH  163 (396)
T ss_dssp             TTCEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHH
T ss_pred             ccceECCCCCEEEEEEcCCcEEEEECCCCCcEEEEecccccCCCCCEEEeccCCccccccccccccCCCCcceeeeeecc
Confidence            34789999999999999999999999988876666655543322                   3567888766544    


Q ss_pred             -eCCCcEEEEECCCCeEEEEecCCCCeeEEEeec-CCe-EEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCC--
Q 021399           71 -SADQTAKLWNVETGAQLFTFNFDSPARSVDFAV-GDK-LAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGP--  145 (313)
Q Consensus        71 -s~D~~v~vWd~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--  145 (313)
                       ..+..|.+||+.+++.............+.|+| ++. ++...........  ..++.+...    ++. ...+..+  
T Consensus       164 ~~~~~~l~~~d~~~g~~~~~~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~--~~l~~~d~~----~~~-~~~l~~~~~  236 (396)
T 3c5m_A          164 TNPTCRLIKVDIETGELEVIHQDTAWLGHPIYRPFDDSTVGFCHEGPHDLVD--ARMWLVNED----GSN-VRKIKEHAE  236 (396)
T ss_dssp             TCCCEEEEEEETTTCCEEEEEEESSCEEEEEEETTEEEEEEEEECSCSSSCS--CCCEEEETT----SCC-CEESSCCCT
T ss_pred             CCCcceEEEEECCCCcEEeeccCCcccccceECCCCCCEEEEEecCCCCCCC--ceEEEEECC----CCc-eeEeeccCC
Confidence             466789999999887765555555677788888 555 4443321110000  111111110    111 1122222  


Q ss_pred             CCceEEEEEccCCCEEEEeeCC-----CeEEEEECCCCceeeecccccCceeceEEEEECC-CCCEEEEee---------
Q 021399          146 QGRINRAVWGPLNRTIISAGED-----AIVRIWDTETGKLLKESDKETGHKKTITSLAKAA-DGSHFLTGS---------  210 (313)
Q Consensus       146 ~~~i~~~~~~~~~~~i~t~~~d-----~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~-~~~~l~s~s---------  210 (313)
                      ...+..+.|+|++++|+.++.+     +.|++||+.+++.... ....+    .. ++|+| ||+.+++++         
T Consensus       237 ~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l-~~~~~----~~-~~~s~~dg~~l~~~~~~~p~~~~~  310 (396)
T 3c5m_A          237 GESCTHEFWIPDGSAMAYVSYFKGQTDRVIYKANPETLENEEV-MVMPP----CS-HLMSNFDGSLMVGDGCDAPVDVAD  310 (396)
T ss_dssp             TEEEEEEEECTTSSCEEEEEEETTTCCEEEEEECTTTCCEEEE-EECCS----EE-EEEECSSSSEEEEEECCC------
T ss_pred             CccccceEECCCCCEEEEEecCCCCccceEEEEECCCCCeEEe-eeCCC----CC-CCccCCCCceEEEecCCcceeecc
Confidence            2246778999999988777544     4599999987764322 11112    22 78999 999888765         


Q ss_pred             -------CCCcEEEEECCCCcEEEEEecCC-----------ceeEEEeccCCCEEEEccc
Q 021399          211 -------LDKSAKLWDARTLELIKTYVTER-----------PVNAVTMSPLLDHVVLGGG  252 (313)
Q Consensus       211 -------~dg~i~iwd~~~~~~~~~~~~~~-----------~~~~~~~~p~~~~~~~~~~  252 (313)
                             .+..|.+||+++++...-.....           ....++|+|++..++.++.
T Consensus       311 ~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~s~  370 (396)
T 3c5m_A          311 ADSYNIENDPFLYVLNTKAKSAQKLCKHSTSWDVLDGDRQITHPHPSFTPNDDGVLFTSD  370 (396)
T ss_dssp             ----CCCCCCEEEEEETTTTBCCEEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEEC
T ss_pred             ccccccCCCCcEEEEecccCceEEccCCCCccccccccccCCCCCceEccCCCeEEEEec
Confidence                   24789999998876532222222           1456789999998877653

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=99.62  E-value=2.4e-14  Score=133.97  Aligned_cols=232  Identities=12%  Similarity=-0.030  Sum_probs=143.8

Q ss_pred             ccccceeEEEEccCCCEEE-----EeeCCCCeEEEeCCCCcEEEEecCCCCce--EEEEECCCCCeEEEeeCCCc-----
Q 021399            8 GHERPLTYLKYNKDGDLLF-----SCAKDHTPTVWFADNGERLGTYRGHNGAV--WCCDVSRDSMTLITGSADQT-----   75 (313)
Q Consensus         8 ~h~~~v~~~~fs~~g~~l~-----s~s~d~~i~iw~~~~~~~~~~~~~H~~~V--~~~~~~~~~~~l~s~s~D~~-----   75 (313)
                      +|...+..++|||||++|+     +|+.+..|++||+++++.+.  ..+-..+  ..++|+|||+.|+.++.|..     
T Consensus       118 ~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~--~~~~~~~~~~~~~wspDg~~l~~~~~d~~~~~~~  195 (695)
T 2bkl_A          118 DGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSK--VDVIEGGKYATPKWTPDSKGFYYEWLPTDPSIKV  195 (695)
T ss_dssp             SSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCS--SCCBSCCTTCCCEECTTSSEEEEEECCCCTTSCG
T ss_pred             CCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCcC--CcccCcccccceEEecCCCEEEEEEecCCCCCcc
Confidence            4666788999999999999     55566789999999988641  1122222  57899999999999888876     


Q ss_pred             --------EEEEECCCCeEEEEecCCCCeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCC
Q 021399           76 --------AKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQG  147 (313)
Q Consensus        76 --------v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  147 (313)
                              |++|++.+++..                 +                               ..+.....+..
T Consensus       196 ~~~~~~~~v~~~~l~t~~~~-----------------~-------------------------------~lv~~~~~~~~  227 (695)
T 2bkl_A          196 DERPGYTTIRYHTLGTEPSK-----------------D-------------------------------TVVHERTGDPT  227 (695)
T ss_dssp             GGGGGGCEEEEEETTSCGGG-----------------C-------------------------------EEEECCCCCTT
T ss_pred             ccCCCCCEEEEEECCCCchh-----------------c-------------------------------eEEEecCCCCE
Confidence                    888888765310                 0                               00001112334


Q ss_pred             ceEEEEEccCCCEEEEeeCCC----eEEEEECCCCceeeecccccCceeceEEEEECCCCCEEEEee---CCCcEEEEEC
Q 021399          148 RINRAVWGPLNRTIISAGEDA----IVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGS---LDKSAKLWDA  220 (313)
Q Consensus       148 ~i~~~~~~~~~~~i~t~~~d~----~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s---~dg~i~iwd~  220 (313)
                      .+..+.|+|+|++++.++.++    .|.+||..++.. ..+.   .+...+....+ ++|..+++..   .++.|.+||+
T Consensus       228 ~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~~~-~~l~---~~~~~~~~~~~-~~g~l~~~s~~~~~~~~l~~~d~  302 (695)
T 2bkl_A          228 TFLQSDLSRDGKYLFVYILRGWSENDVYWKRPGEKDF-RLLV---KGVGAKYEVHA-WKDRFYVLTDEGAPRQRVFEVDP  302 (695)
T ss_dssp             CEEEEEECTTSCCEEEEEEETTTEEEEEEECTTCSSC-EEEE---ECSSCCEEEEE-ETTEEEEEECTTCTTCEEEEEBT
T ss_pred             EEEEEEECCCCCEEEEEEeCCCCceEEEEEcCCCCce-EEee---cCCCceEEEEe-cCCcEEEEECCCCCCCEEEEEeC
Confidence            567788999999888877665    777887655432 2222   13334445455 5666444443   2578999999


Q ss_pred             CCCcE--EEEEe-c--CCceeEEEeccCCCEEEEcccccCceeEeeccCCCceeeeeeehhhhhhhcccccc-ccceeEE
Q 021399          221 RTLEL--IKTYV-T--ERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGH-FGPINAL  294 (313)
Q Consensus       221 ~~~~~--~~~~~-~--~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h-~~~V~~~  294 (313)
                      ++++.  ...+. .  ...+..++++  ++.++++...++.           ..+..++.. ++....+..+ .+.|..+
T Consensus       303 ~~~~~~~~~~l~~~~~~~~l~~~~~~--~~~lv~~~~~dg~-----------~~l~~~~~~-g~~~~~l~~~~~~~v~~~  368 (695)
T 2bkl_A          303 AKPARASWKEIVPEDSSASLLSVSIV--GGHLSLEYLKDAT-----------SEVRVATLK-GKPVRTVQLPGVGAASNL  368 (695)
T ss_dssp             TBCSGGGCEEEECCCSSCEEEEEEEE--TTEEEEEEEETTE-----------EEEEEEETT-CCEEEECCCSSSSEECCC
T ss_pred             CCCCccCCeEEecCCCCCeEEEEEEE--CCEEEEEEEECCE-----------EEEEEEeCC-CCeeEEecCCCCeEEEEe
Confidence            87653  22332 2  3346667776  4566665444332           122223321 2222223333 6778889


Q ss_pred             EECCCCCeeEEEEE
Q 021399          295 AFNPDGKRYGFLLL  308 (313)
Q Consensus       295 ~fspdgk~~~~~~~  308 (313)
                      +++||++.++|...
T Consensus       369 ~~s~d~~~l~~~~s  382 (695)
T 2bkl_A          369 MGLEDLDDAYYVFT  382 (695)
T ss_dssp             BSCTTCSEEEEEEE
T ss_pred             ecCCCCCEEEEEEc
Confidence            99999999887654

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=99.62  E-value=2.2e-13  Score=126.62  Aligned_cols=253  Identities=13%  Similarity=0.038  Sum_probs=153.5

Q ss_pred             cccccccccee---------EEEEc--cCCCE-EEEeeC-CCCeEEEeCC--CCcEEEEecC-----CCCceEEEEECCC
Q 021399            4 ILMKGHERPLT---------YLKYN--KDGDL-LFSCAK-DHTPTVWFAD--NGERLGTYRG-----HNGAVWCCDVSRD   63 (313)
Q Consensus         4 ~~l~~h~~~v~---------~~~fs--~~g~~-l~s~s~-d~~i~iw~~~--~~~~~~~~~~-----H~~~V~~~~~~~~   63 (313)
                      +.|..|...+.         ...|+  |||++ |+.++. +..|.+|+..  .......+..     |...+..++|+||
T Consensus        61 ~~l~~~~~~~~~~~~~~~~~~~~~~~SPDg~~~la~~~~~~~~l~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~spD  140 (662)
T 3azo_A           61 ESALPAPWNVRNRVFEYSGFPWAGVPRPAGGPLLVFTHFGDQRLYAFEPDAPGGAVPRPLTPVSAVGGGLRWADPVLLPE  140 (662)
T ss_dssp             EESSCTTCCBCCCGGGTCCCCEEEECCSSSSCEEEEEBTTTCCEEEECTTSTTCCCCEECSCCCCSTTCEEEEEEEEETT
T ss_pred             ceeCCCCccccccccccCCccceeeeecCCCeEEEEEECCCCeEEEEcCCCCCCCCCEeccCCccCCCCccccCcEECCC
Confidence            44555655555         55565  99998 776554 4555555554  2033455655     6778899999999


Q ss_pred             CCeEEEeeCC----------CcEEEEECCC------CeEEEEe-cCCCCeeEEEeecCCeEEEEEC-CCceecc--ccce
Q 021399           64 SMTLITGSAD----------QTAKLWNVET------GAQLFTF-NFDSPARSVDFAVGDKLAVITT-DPFMELN--SAIH  123 (313)
Q Consensus        64 ~~~l~s~s~D----------~~v~vWd~~~------~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~--~~~~  123 (313)
                      |+.|+.++.|          ..|++||+.+      ++..... ........+.|+|+++.++... +......  ..+.
T Consensus       141 g~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~  220 (662)
T 3azo_A          141 RGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAADRSAVRELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELK  220 (662)
T ss_dssp             TTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTCGGGSEESSCSCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEE
T ss_pred             CCEEEEEEecccCCCCCCceeEEEEEECCCCccccCCceeEEEecCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEE
Confidence            9999988877          5899999988      5544333 2233345567888876555432 2211000  1122


Q ss_pred             eeeeeeCCCCCCC---ceEEEecCCCCceEEEEEccCCCEEEEeeCCC--eEEEEECCCCceeeecccccCceec-----
Q 021399          124 VKRIARDPADQGG---ESVLILKGPQGRINRAVWGPLNRTIISAGEDA--IVRIWDTETGKLLKESDKETGHKKT-----  193 (313)
Q Consensus       124 ~~~~~~~~~~~~~---~~~~~~~~~~~~i~~~~~~~~~~~i~t~~~d~--~i~lwd~~~~~~~~~~~~~~~h~~~-----  193 (313)
                      ++++.     ..+   .......++...+..+.|+|+++.+++++.++  .|.+||+.+++... +..  .+...     
T Consensus       221 ~~d~~-----~~g~~~~~~~l~~~~~~~~~~~~~spdg~l~~~~~~~~~~~l~~~~~~~~~~~~-l~~--~~~~~~~p~w  292 (662)
T 3azo_A          221 TARVT-----EDGRFADTRTLLGGPEEAIAQAEWAPDGSLIVATDRTGWWNLHRVDPATGAATQ-LCR--REEEFAGPLW  292 (662)
T ss_dssp             EEEEC-----TTSCEEEEEEEEEETTBCEEEEEECTTSCEEEEECTTSSCEEEEECTTTCCEEE-SSC--CSSBSSCCCC
T ss_pred             EEEEC-----CCCcccccEEeCCCCCceEcceEECCCCeEEEEECCCCCeEEEEEECCCCceee-ccc--ccccccCccc
Confidence            22221     012   23333344567889999999999888888888  67777776665432 221  12111     


Q ss_pred             ---eEEEEECCCCCEEEEeeCCCcEEEE--ECCCCcEEEEEec-CCceeEEEeccCCCEEEEcccccC--ceeEeeccCC
Q 021399          194 ---ITSLAKAADGSHFLTGSLDKSAKLW--DARTLELIKTYVT-ERPVNAVTMSPLLDHVVLGGGQDA--SAVTTTDHRA  265 (313)
Q Consensus       194 ---v~~~~~s~~~~~l~s~s~dg~i~iw--d~~~~~~~~~~~~-~~~~~~~~~~p~~~~~~~~~~~~~--~~~~~~~~~~  265 (313)
                         +..+++++++..+++++. +.++||  |+.+++ +..+.. ...+..+ ++++++.+++..+...  ..++..|...
T Consensus       293 ~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~d~~~~~-~~~l~~~~~~~~~~-~s~~~~~~~~~~~~~~~~~~i~~~d~~~  369 (662)
T 3azo_A          293 TPGMRWFAPLANGLIAVVHGK-GAAVLGILDPESGE-LVDAAGPWTEWAAT-LTVSGTRAVGVAASPRTAYEVVELDTVT  369 (662)
T ss_dssp             STTCCSEEECTTSCEEEEEBS-SSCEEEEEETTTTE-EEECCSSCCEEEEE-EEEETTEEEEEEEETTEEEEEEEEETTT
T ss_pred             cccCceEeEeCCCEEEEEEEc-CccEEEEEECCCCc-EEEecCCCCeEEEE-EecCCCEEEEEEcCCCCCCEEEEEECCC
Confidence               567889999999999998 999999  666555 455543 2334444 2566676665544332  2355556544


Q ss_pred             Cc
Q 021399          266 GK  267 (313)
Q Consensus       266 ~~  267 (313)
                      +.
T Consensus       370 g~  371 (662)
T 3azo_A          370 GR  371 (662)
T ss_dssp             CC
T ss_pred             Cc
Confidence            43

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=99.60  E-value=1.2e-11  Score=112.30  Aligned_cols=280  Identities=13%  Similarity=0.081  Sum_probs=167.5

Q ss_pred             ceeEEEEccCCCEEEEeeCCCCeEEEeCC--CCcEEEEecCCCCceEEEEEC----CCCCeEEEee-CCCcEEEEECCCC
Q 021399           12 PLTYLKYNKDGDLLFSCAKDHTPTVWFAD--NGERLGTYRGHNGAVWCCDVS----RDSMTLITGS-ADQTAKLWNVETG   84 (313)
Q Consensus        12 ~v~~~~fs~~g~~l~s~s~d~~i~iw~~~--~~~~~~~~~~H~~~V~~~~~~----~~~~~l~s~s-~D~~v~vWd~~~~   84 (313)
                      .+..+.|||||+++++++.|+.|.+||+.  +.+.+.++.... .-..++|+    |||++++++. .++++.++|..+.
T Consensus       198 ~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~i~~G~-~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~  276 (567)
T 1qks_A          198 AVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGS-EARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETL  276 (567)
T ss_dssp             CEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCS-EEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTC
T ss_pred             CccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEeEEEecCC-CCceeEEccccCCCCCEEEEEEccCCeEEEEECCCC
Confidence            46789999999999999999999999996  888888887643 35688999    6998777665 5699999999998


Q ss_pred             eEEEEecCCC------------CeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEE
Q 021399           85 AQLFTFNFDS------------PARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRA  152 (313)
Q Consensus        85 ~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~  152 (313)
                      +.+..+....            ....+..+++....++...      ....++-+..  .......+..+. ........
T Consensus       277 ~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~------~~g~v~~vd~--~~~~~~~v~~i~-~~~~~~d~  347 (567)
T 1qks_A          277 EPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVK------ETGKILLVDY--TDLNNLKTTEIS-AERFLHDG  347 (567)
T ss_dssp             CEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEET------TTTEEEEEET--TCSSEEEEEEEE-CCSSEEEE
T ss_pred             cEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEec------CCCeEEEEec--CCCccceeeeee-ccccccCc
Confidence            8876654321            1223333333222221111      0011111110  000001111111 12245677


Q ss_pred             EEccCCCEEEEee-CCCeEEEEECCCCceeeeccc--ccCceeceEEEEECCCCCEE-EEee-CCCcEEEEECCC-----
Q 021399          153 VWGPLNRTIISAG-EDAIVRIWDTETGKLLKESDK--ETGHKKTITSLAKAADGSHF-LTGS-LDKSAKLWDART-----  222 (313)
Q Consensus       153 ~~~~~~~~i~t~~-~d~~i~lwd~~~~~~~~~~~~--~~~h~~~v~~~~~s~~~~~l-~s~s-~dg~i~iwd~~~-----  222 (313)
                      .|+|++++++++. .++.|.++|+.+++....+..  ...|.+.-..+ ++|++..+ +++. .+++|.++|.++     
T Consensus       348 ~~~pdgr~~~va~~~sn~V~ViD~~t~kl~~~i~vgg~~Phpg~g~~~-~~p~~g~v~~t~~~g~~~Vsvid~~~~~~~~  426 (567)
T 1qks_A          348 GLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANF-VHPTFGPVWATSHMGDDSVALIGTDPEGHPD  426 (567)
T ss_dssp             EECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTT
T ss_pred             eECCCCCEEEEEeCCCCeEEEEECCCCcEEEEEeccCcCCCCccceee-ECCCCCcEEEeCCCCCCeEEEecCCCCCCcc
Confidence            8999999887654 678999999999887665432  12343222222 57874444 4443 468999999988     


Q ss_pred             --CcEEEEEecCC-ceeEEEeccCCCEEEEcc--ccc---CceeEeeccCCC-----ceeeeeeehhhhhhhcccccccc
Q 021399          223 --LELIKTYVTER-PVNAVTMSPLLDHVVLGG--GQD---ASAVTTTDHRAG-----KFEAKFFDKILQEEIGGVKGHFG  289 (313)
Q Consensus       223 --~~~~~~~~~~~-~~~~~~~~p~~~~~~~~~--~~~---~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~h~~  289 (313)
                        .+.++++.... .-..+..+|++.++++..  ..+   ...+.++|....     .............   .+..-..
T Consensus       427 ~~~kvv~~i~~~g~g~~~i~~~p~~~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~g~~~~~~~~~~~~~~---~~~~~~~  503 (567)
T 1qks_A          427 NAWKILDSFPALGGGSLFIKTHPNSQYLYVDATLNPEAEISGSVAVFDIKAMTGDGSDPEFKTLPIAEWA---GITEGQP  503 (567)
T ss_dssp             TBTSEEEEEECSCSCCCCEECCTTCSEEEEECTTCSSHHHHTCEEEEEGGGCCCSSSCCCEEEECHHHHH---TCCSSCC
T ss_pred             ccCEEEEEEecCCCCCEEEEeCCCCCeEEEecCCCCCcccCceEEEEECCcccccccCCCcEEecccccc---ccCCCCc
Confidence              67788876543 235578899999998864  222   234555554322     1000111110000   1111135


Q ss_pred             ceeEEEECCCCCeeEE
Q 021399          290 PINALAFNPDGKRYGF  305 (313)
Q Consensus       290 ~V~~~~fspdgk~~~~  305 (313)
                      .+..++|+|||+++=+
T Consensus       504 ~~~~~~~~~~G~~~~~  519 (567)
T 1qks_A          504 RVVQGEFNKDGTEVWF  519 (567)
T ss_dssp             EEEEEEECTTSSEEEE
T ss_pred             ceEeeeECCCCCEEEE
Confidence            7899999999998533

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=99.56  E-value=4.3e-12  Score=107.77  Aligned_cols=223  Identities=14%  Similarity=0.003  Sum_probs=146.5

Q ss_pred             ceeEEEEccCCCEEEEeeCCCCeEEEeCCCCcEEEEecCCCCceEEEEECCCCCeEEEeeCCCcEEEEECCCCeEEEEec
Q 021399           12 PLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFN   91 (313)
Q Consensus        12 ~v~~~~fs~~g~~l~s~s~d~~i~iw~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~v~vWd~~~~~~~~~~~   91 (313)
                      .+..+.++ +++.+++...++.|.+||.++++.+.++.. ......++++++++++++...++.|.+||+.+++....+.
T Consensus        45 ~~~~i~~~-~~~lyv~~~~~~~v~viD~~t~~~~~~i~~-~~~p~~i~~~~~g~lyv~~~~~~~v~~iD~~t~~~~~~i~  122 (328)
T 3dsm_A           45 VAQSMVIR-DGIGWIVVNNSHVIFAIDINTFKEVGRITG-FTSPRYIHFLSDEKAYVTQIWDYRIFIINPKTYEITGYIE  122 (328)
T ss_dssp             CEEEEEEE-TTEEEEEEGGGTEEEEEETTTCCEEEEEEC-CSSEEEEEEEETTEEEEEEBSCSEEEEEETTTTEEEEEEE
T ss_pred             cceEEEEE-CCEEEEEEcCCCEEEEEECcccEEEEEcCC-CCCCcEEEEeCCCeEEEEECCCCeEEEEECCCCeEEEEEE
Confidence            35667774 455666666689999999999999888854 4567889998888666665589999999999887654332


Q ss_pred             CCCCeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEccCCCEEEEee-CCCeE
Q 021399           92 FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAG-EDAIV  170 (313)
Q Consensus        92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~t~~-~d~~i  170 (313)
                      .....                                               +.......+++ ..++.+++.. .++.|
T Consensus       123 ~g~~~-----------------------------------------------~~~~~p~~i~~-~~~~lyv~~~~~~~~v  154 (328)
T 3dsm_A          123 CPDMD-----------------------------------------------MESGSTEQMVQ-YGKYVYVNCWSYQNRI  154 (328)
T ss_dssp             CTTCC-----------------------------------------------TTTCBCCCEEE-ETTEEEEEECTTCCEE
T ss_pred             cCCcc-----------------------------------------------ccCCCcceEEE-ECCEEEEEcCCCCCEE
Confidence            11000                                               00001112223 2233344433 48899


Q ss_pred             EEEECCCCceeeecccccCceeceEEEEECCCCCEEEEeeCC----------CcEEEEECCCCcEEEEEec--CCceeEE
Q 021399          171 RIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLD----------KSAKLWDARTLELIKTYVT--ERPVNAV  238 (313)
Q Consensus       171 ~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d----------g~i~iwd~~~~~~~~~~~~--~~~~~~~  238 (313)
                      .+||+.+++...++..    ......++++++|+.++++..+          +.|.++|.++++....+..  ....+.+
T Consensus       155 ~viD~~t~~~~~~i~~----g~~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~~~g~~p~~l  230 (328)
T 3dsm_A          155 LKIDTETDKVVDELTI----GIQPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFKFKLGDWPSEV  230 (328)
T ss_dssp             EEEETTTTEEEEEEEC----SSCBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEEECCTTCCCEEE
T ss_pred             EEEECCCCeEEEEEEc----CCCccceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCCeEEEEEecCCCCCceeE
Confidence            9999999887665532    2245678899999987777655          7899999999988777654  2367899


Q ss_pred             EeccCCCEEEEcccccCceeEeeccCCCceeeeeeehhhhhhhccccccccceeEEEECCCCCe
Q 021399          239 TMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKR  302 (313)
Q Consensus       239 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~fspdgk~  302 (313)
                      +++|+++.++++.+    .++.+|...++.....          .+..+......++++|+++.
T Consensus       231 a~~~d~~~lyv~~~----~v~~~d~~t~~~~~~~----------~~~~~~~~p~gi~vdp~~g~  280 (328)
T 3dsm_A          231 QLNGTRDTLYWINN----DIWRMPVEADRVPVRP----------FLEFRDTKYYGLTVNPNNGE  280 (328)
T ss_dssp             EECTTSCEEEEESS----SEEEEETTCSSCCSSC----------SBCCCSSCEEEEEECTTTCC
T ss_pred             EEecCCCEEEEEcc----EEEEEECCCCceeeee----------eecCCCCceEEEEEcCCCCe
Confidence            99999998888643    3445554443321100          01112356788999995443

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=99.56  E-value=1.8e-12  Score=106.56  Aligned_cols=222  Identities=8%  Similarity=-0.069  Sum_probs=140.3

Q ss_pred             ceeEEEEccCCCEEE-EeeCCCCeEEEeCCCCcEEEEecCCCCceEEEEECCCCCeEEEeeCCCcEEEEECCCCeEEEEe
Q 021399           12 PLTYLKYNKDGDLLF-SCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTF   90 (313)
Q Consensus        12 ~v~~~~fs~~g~~l~-s~s~d~~i~iw~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~v~vWd~~~~~~~~~~   90 (313)
                      .+.+++++++|+.++ +.+.++.|.+|+..+.........+...+.+++++++++++++.. ++.|.+||..+..... .
T Consensus        25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~-~~~i~~~d~~~~~~~~-~  102 (270)
T 1rwi_B           25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDGAGTVYVTDF-NNRVVTLAAGSNNQTV-L  102 (270)
T ss_dssp             CEEEEEECTTCCEEEEECSSSCEEEEECC-----EECCCCSCCSCCCEEECTTCCEEEEET-TTEEEEECTTCSCCEE-C
T ss_pred             CccceEECCCCCEEEEccCCCCcEEEecCCCcccceEeeCCcCCcceeEECCCCCEEEEcC-CCEEEEEeCCCceEee-e
Confidence            678999999999777 557789999998765543322223345678899999998777665 8899999976542210 0


Q ss_pred             cCCCCeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEccCCCEEEEeeCCCeE
Q 021399           91 NFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIV  170 (313)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~t~~~d~~i  170 (313)
                      .                                                   .........+++.++++.+++...++.|
T Consensus       103 ~---------------------------------------------------~~~~~~p~~i~~~~~g~l~v~~~~~~~i  131 (270)
T 1rwi_B          103 P---------------------------------------------------FDGLNYPEGLAVDTQGAVYVADRGNNRV  131 (270)
T ss_dssp             C---------------------------------------------------CCSCSSEEEEEECTTCCEEEEEGGGTEE
T ss_pred             e---------------------------------------------------cCCcCCCcceEECCCCCEEEEECCCCEE
Confidence            0                                                   0011235567788888877777778899


Q ss_pred             EEEECCCCceeeecccccCceeceEEEEECCCCCEEEEeeCCCcEEEEECCCCcEEEEEecC-CceeEEEeccCCCEEEE
Q 021399          171 RIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTE-RPVNAVTMSPLLDHVVL  249 (313)
Q Consensus       171 ~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~-~~~~~~~~~p~~~~~~~  249 (313)
                      .+|+..+.......   ......+..++++++|+.+++...++.|.+||.++.......... .....++++|++ .+++
T Consensus       132 ~~~~~~~~~~~~~~---~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~d~~g-~l~v  207 (270)
T 1rwi_B          132 VKLAAGSKTQTVLP---FTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNNQVVLPFTDITAPWGIAVDEAG-TVYV  207 (270)
T ss_dssp             EEECTTCCSCEECC---CCSCCSCCCEEECTTCCEEEEEGGGTEEEEECTTTCCEEECCCSSCCSEEEEEECTTC-CEEE
T ss_pred             EEEECCCceeEeec---cccCCCceeEEEeCCCCEEEEECCCCEEEEEecCCCceEeecccCCCCceEEEECCCC-CEEE
Confidence            99986554332211   122345788999999998887777889999999876654332222 457889999988 4555


Q ss_pred             cccccCceeEeeccCCCceeeeeeehhhhhhhccccccccceeEEEECCCCCee
Q 021399          250 GGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKRY  303 (313)
Q Consensus       250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~fspdgk~~  303 (313)
                      +...+ ..+..++......            ......+...+.+++++|||+.+
T Consensus       208 ~~~~~-~~v~~~~~~~~~~------------~~~~~~~~~~p~~i~~~~~g~l~  248 (270)
T 1rwi_B          208 TEHNT-NQVVKLLAGSTTS------------TVLPFTGLNTPLAVAVDSDRTVY  248 (270)
T ss_dssp             EETTT-SCEEEECTTCSCC------------EECCCCSCSCEEEEEECTTCCEE
T ss_pred             EECCC-CcEEEEcCCCCcc------------eeeccCCCCCceeEEECCCCCEE
Confidence            43222 2233344322111            01111233578999999999743

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=99.55  E-value=1.8e-12  Score=110.10  Aligned_cols=200  Identities=11%  Similarity=0.112  Sum_probs=138.8

Q ss_pred             ccccceeEEEEccCCCEEEEeeCCCCeEEEeCCCCc-EEEEe---------cCCCCceEEEEECC-CCCeEEEee-CCCc
Q 021399            8 GHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGE-RLGTY---------RGHNGAVWCCDVSR-DSMTLITGS-ADQT   75 (313)
Q Consensus         8 ~h~~~v~~~~fs~~g~~l~s~s~d~~i~iw~~~~~~-~~~~~---------~~H~~~V~~~~~~~-~~~~l~s~s-~D~~   75 (313)
                      ++...+..++++|+|+++++...++.|++|+.+... .+.++         .++-.....++++| +++++++.+ .++.
T Consensus        88 ~~~~~p~gia~d~~g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~  167 (329)
T 3fvz_A           88 NLFYLPHGLSIDTDGNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSR  167 (329)
T ss_dssp             TTCSSEEEEEECTTSCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCE
T ss_pred             CccCCceEEEECCCCCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCe
Confidence            344567899999999999998889999999976442 45555         34555789999999 788888876 6999


Q ss_pred             EEEEECCCCeEEEEecCCCCeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEc
Q 021399           76 AKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWG  155 (313)
Q Consensus        76 v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~  155 (313)
                      |++||. +++.+..+.....                        .         . . .       ..++......++++
T Consensus       168 I~~~~~-~g~~~~~~~~~g~------------------------~---------~-~-~-------~~~~~~~p~gia~d  204 (329)
T 3fvz_A          168 IVQFSP-SGKFVTQWGEESS------------------------G---------S-S-P-------RPGQFSVPHSLALV  204 (329)
T ss_dssp             EEEECT-TSCEEEEECEECC------------------------S---------S-S-C-------CTTEESCEEEEEEE
T ss_pred             EEEEcC-CCCEEEEeccCCC------------------------C---------C-C-C-------CCcccCCCcEEEEE
Confidence            999994 4444332210000                        0         0 0 0       00111235678889


Q ss_pred             cC-CCEEEEeeCCCeEEEEECCCCceeeecccccCceeceEEEEECC------CCCEEEEeeCCCcEEEEECCCCcEEEE
Q 021399          156 PL-NRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAA------DGSHFLTGSLDKSAKLWDARTLELIKT  228 (313)
Q Consensus       156 ~~-~~~i~t~~~d~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~------~~~~l~s~s~dg~i~iwd~~~~~~~~~  228 (313)
                      |+ +..+++...++.|++||..+++.+..+.. ..+...+.+++++|      +|+..++...+.+|++||..+++.+..
T Consensus       205 ~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~~-~~~~~~~~~~~~~pg~~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~  283 (329)
T 3fvz_A          205 PHLDQLCVADRENGRIQCFKTDTKEFVREIKH-ASFGRNVFAISYIPGFLFAVNGKPYFGDQEPVQGFVMNFSSGEIIDV  283 (329)
T ss_dssp             TTTTEEEEEETTTTEEEEEETTTCCEEEEECC-TTTTTCEEEEEEETTEEEEEECCCCTTCSCCCCEEEEETTTCCEEEE
T ss_pred             CCCCEEEEEECCCCEEEEEECCCCcEEEEEec-cccCCCcceeeecCCEEEEeCCCEEeccCCCcEEEEEEcCCCeEEEE
Confidence            88 77777778899999999988887766532 24556788999998      333333334456899999999999888


Q ss_pred             Ee----cCCceeEEEeccCCCEEEEccc
Q 021399          229 YV----TERPVNAVTMSPLLDHVVLGGG  252 (313)
Q Consensus       229 ~~----~~~~~~~~~~~p~~~~~~~~~~  252 (313)
                      +.    .......++++|++ .++++..
T Consensus       284 ~~~~~~~~~~p~~ia~~~dG-~lyvad~  310 (329)
T 3fvz_A          284 FKPVRKHFDMPHDIVASEDG-TVYIGDA  310 (329)
T ss_dssp             ECCSSSCCSSEEEEEECTTS-EEEEEES
T ss_pred             EcCCCCccCCeeEEEECCCC-CEEEEEC
Confidence            73    22347889999998 6666543

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=99.54  E-value=2.1e-10  Score=95.36  Aligned_cols=266  Identities=11%  Similarity=0.101  Sum_probs=167.4

Q ss_pred             cccccccceeEEEEccCCCEEEEeeCCCCeEEEeCCCCcEEE-EecCCCCceEEEEECCCCCeEEEeeCCCcEEEEECCC
Q 021399            5 LMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLG-TYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVET   83 (313)
Q Consensus         5 ~l~~h~~~v~~~~fs~~g~~l~s~s~d~~i~iw~~~~~~~~~-~~~~H~~~V~~~~~~~~~~~l~s~s~D~~v~vWd~~~   83 (313)
                      .+..+...+.+++++++|..+++...++.|.+||.. ++... .+..+...+.+++++++++++++...++.|..||...
T Consensus         9 ~~~~~~~~~~~i~~d~~g~l~v~~~~~~~v~~~d~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g   87 (299)
T 2z2n_A            9 NLTNQDTGPYGITVSDKGKVWITQHKANMISCINLD-GKITEYPLPTPDAKVMCLTISSDGEVWFTENAANKIGRITKKG   87 (299)
T ss_dssp             ECCSSSCCEEEEEECTTSCEEEEETTTTEEEEECTT-CCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTTS
T ss_pred             cCCCcCCCccceEECCCCCEEEEecCCCcEEEEcCC-CCeEEecCCcccCceeeEEECCCCCEEEeCCCCCeEEEECCCC
Confidence            345566789999999999988877778899999988 54432 2234557789999999999888877788999999863


Q ss_pred             CeEEEEec-CCCCeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCce-EEEecCCCCceEEEEEccCCCEE
Q 021399           84 GAQLFTFN-FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGES-VLILKGPQGRINRAVWGPLNRTI  161 (313)
Q Consensus        84 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~i~~~~~~~~~~~i  161 (313)
                      ........ ....+..+.+.+++.+.+.....     .  .+..+  +.   .+.. ..........+..+++.++++.+
T Consensus        88 ~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~-----~--~i~~~--d~---~g~~~~~~~~~~~~~~~~i~~~~~g~l~  155 (299)
T 2z2n_A           88 IIKEYTLPNPDSAPYGITEGPNGDIWFTEMNG-----N--RIGRI--TD---DGKIREYELPNKGSYPSFITLGSDNALW  155 (299)
T ss_dssp             CEEEEECSSTTCCEEEEEECTTSCEEEEETTT-----T--EEEEE--CT---TCCEEEEECSSTTCCEEEEEECTTSCEE
T ss_pred             cEEEEeCCCcCCCceeeEECCCCCEEEEecCC-----c--eEEEE--CC---CCCEEEecCCCCCCCCceEEEcCCCCEE
Confidence            22222221 22345666677666665544321     0  01000  11   1111 11122234567888999999887


Q ss_pred             EEeeCCCeEEEEECCCCceeeecccccCceeceEEEEECCCCCEEEEeeCCCcEEEEECCCCcEEEEEec---CCceeEE
Q 021399          162 ISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVT---ERPVNAV  238 (313)
Q Consensus       162 ~t~~~d~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~---~~~~~~~  238 (313)
                      ++...++.|..||. +++... +.. ......+..++++++|...++...++.|..||. +++.. .+..   ...+..+
T Consensus       156 v~~~~~~~i~~~~~-~g~~~~-~~~-~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~-~~~~~~~~~~~~~i  230 (299)
T 2z2n_A          156 FTENQNNAIGRITE-SGDITE-FKI-PTPASGPVGITKGNDDALWFVEIIGNKIGRITT-SGEIT-EFKIPTPNARPHAI  230 (299)
T ss_dssp             EEETTTTEEEEECT-TCCEEE-EEC-SSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEE-EEECSSTTCCEEEE
T ss_pred             EEeCCCCEEEEEcC-CCcEEE-eeC-CCCCCcceeEEECCCCCEEEEccCCceEEEECC-CCcEE-EEECCCCCCCceeE
Confidence            77777789999998 555432 211 123456789999999998777777889999999 66643 3322   2457889


Q ss_pred             EeccCCCEEEEcccccCceeEeeccCCCceeeeeeehhhhhhhccccccccceeEEEECCCCCee
Q 021399          239 TMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKRY  303 (313)
Q Consensus       239 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~fspdgk~~  303 (313)
                      ++.+++. ++++... ...+..+|. .+.+  ..+.         +..+...+.++++ ++|+.+
T Consensus       231 ~~~~~g~-l~v~~~~-~~~i~~~d~-~g~~--~~~~---------~~~~~~~~~~i~~-~~g~l~  280 (299)
T 2z2n_A          231 TAGAGID-LWFTEWG-ANKIGRLTS-NNII--EEYP---------IQIKSAEPHGICF-DGETIW  280 (299)
T ss_dssp             EECSTTC-EEEEETT-TTEEEEEET-TTEE--EEEE---------CSSSSCCEEEEEE-CSSCEE
T ss_pred             EECCCCC-EEEeccC-CceEEEECC-CCce--EEEe---------CCCCCCccceEEe-cCCCEE
Confidence            9999876 4444322 223444444 2221  1111         1233467889999 888764

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=99.54  E-value=1.2e-11  Score=102.62  Aligned_cols=187  Identities=12%  Similarity=0.158  Sum_probs=133.1

Q ss_pred             ccccceeEEEE-ccCCCEEEEeeC-CCCeEEEeCCCCcEEEEecC-CCCceEEEEECCCCCeEEEeeCCCcEEEEECCCC
Q 021399            8 GHERPLTYLKY-NKDGDLLFSCAK-DHTPTVWFADNGERLGTYRG-HNGAVWCCDVSRDSMTLITGSADQTAKLWNVETG   84 (313)
Q Consensus         8 ~h~~~v~~~~f-s~~g~~l~s~s~-d~~i~iw~~~~~~~~~~~~~-H~~~V~~~~~~~~~~~l~s~s~D~~v~vWd~~~~   84 (313)
                      +|...+..+++ ++++..+++... ++.|++|| .+++.+..+.. +...+.+++++++|+++++...++.|.+||... 
T Consensus        74 ~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~~d-~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g-  151 (286)
T 1q7f_A           74 SQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYN-QYGQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQNG-  151 (286)
T ss_dssp             TCBSSEEEEEEETTTTEEEEEECGGGCEEEEEC-TTSCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTTS-
T ss_pred             ccccCceEEEEEcCCCeEEEEcCCCCCEEEEEC-CCCcEEEEecCccCCCceEEEEeCCCCEEEEECCCCEEEEEcCCC-
Confidence            35567889999 577877776643 88999999 66777776643 446789999999999888878889999999653 


Q ss_pred             eEEEEecCCCCeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEccCCCEEEEe
Q 021399           85 AQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISA  164 (313)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~t~  164 (313)
                      +.+..+..                                                  ..+...+..++++|+++.+++.
T Consensus       152 ~~~~~~~~--------------------------------------------------~~~~~~p~~i~~~~~g~l~v~~  181 (286)
T 1q7f_A          152 NVLHKFGC--------------------------------------------------SKHLEFPNGVVVNDKQEIFISD  181 (286)
T ss_dssp             CEEEEEEC--------------------------------------------------TTTCSSEEEEEECSSSEEEEEE
T ss_pred             CEEEEeCC--------------------------------------------------CCccCCcEEEEECCCCCEEEEE
Confidence            22211100                                                  0112345678888988877877


Q ss_pred             eCCCeEEEEECCCCceeeecccccCceeceEEEEECCCCCEEEEeeCCC-cEEEEECCCCcEEEEEecCC---ceeEEEe
Q 021399          165 GEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDK-SAKLWDARTLELIKTYVTER---PVNAVTM  240 (313)
Q Consensus       165 ~~d~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~dg-~i~iwd~~~~~~~~~~~~~~---~~~~~~~  240 (313)
                      ..++.|++||.. ++.+..+.. .++...+..++++++|..+++...++ .|.+||. +++.+..+....   .+..+++
T Consensus       182 ~~~~~i~~~~~~-g~~~~~~~~-~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~~i~~  258 (286)
T 1q7f_A          182 NRAHCVKVFNYE-GQYLRQIGG-EGITNYPIGVGINSNGEILIADNHNNFNLTIFTQ-DGQLISALESKVKHAQCFDVAL  258 (286)
T ss_dssp             GGGTEEEEEETT-CCEEEEESC-TTTSCSEEEEEECTTCCEEEEECSSSCEEEEECT-TSCEEEEEEESSCCSCEEEEEE
T ss_pred             CCCCEEEEEcCC-CCEEEEEcc-CCccCCCcEEEECCCCCEEEEeCCCCEEEEEECC-CCCEEEEEcccCCCCcceeEEE
Confidence            788999999974 444444422 23335788999999999888888886 9999996 466666664322   3668999


Q ss_pred             ccCCCEEEEc
Q 021399          241 SPLLDHVVLG  250 (313)
Q Consensus       241 ~p~~~~~~~~  250 (313)
                      +|++. ++++
T Consensus       259 ~~~g~-l~vs  267 (286)
T 1q7f_A          259 MDDGS-VVLA  267 (286)
T ss_dssp             ETTTE-EEEE
T ss_pred             CCCCc-EEEE
Confidence            99875 5554

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=99.54  E-value=2.2e-12  Score=111.10  Aligned_cols=217  Identities=12%  Similarity=0.071  Sum_probs=135.1

Q ss_pred             cceeEEEEccCCCEEEEeeC--CCCeEEEeCCCCcEEEE-ecCCCCceEEEEECCCC-CeEEEeeCCCcEEEEECCC-Ce
Q 021399           11 RPLTYLKYNKDGDLLFSCAK--DHTPTVWFADNGERLGT-YRGHNGAVWCCDVSRDS-MTLITGSADQTAKLWNVET-GA   85 (313)
Q Consensus        11 ~~v~~~~fs~~g~~l~s~s~--d~~i~iw~~~~~~~~~~-~~~H~~~V~~~~~~~~~-~~l~s~s~D~~v~vWd~~~-~~   85 (313)
                      ..+..++|+|||++|+++..  ++.|.+||+++++.+.+ +.. .+ -+.+.+.|++ ..+++.+.||.+.+|+... ++
T Consensus       108 ~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~~~~~~~i~~-~~-~~~v~~~p~~~~~~~~~~~dg~~~~v~~~~~g~  185 (361)
T 2oiz_A          108 NYDGLFRQTTDGKFIVLQNASPATSIGIVDVAKGDYVEDVTAA-AG-CWSVIPQPNRPRSFMTICGDGGLLTINLGEDGK  185 (361)
T ss_dssp             CCGGGEEECTTSSEEEEEEESSSEEEEEEETTTTEEEEEEGGG-TT-EEEEEECTTSSSEEEEEETTSSEEEEEECTTSS
T ss_pred             CCcceEEECCCCCEEEEECCCCCCeEEEEECCCCcEEEEEecC-CC-cceeEEcCCCCeeEEEECCCCcEEEEEECCCCc
Confidence            44678999999999998874  58899999999998887 553 22 2335567765 6788899999999999865 44


Q ss_pred             EEEEe------cCCCCeeEEEeecC-CeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecC------C----CCc
Q 021399           86 QLFTF------NFDSPARSVDFAVG-DKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKG------P----QGR  148 (313)
Q Consensus        86 ~~~~~------~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~----~~~  148 (313)
                      .....      ........+.+.++ ..+.+...+.      .....++..+    .......+.-      +    ...
T Consensus       186 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~------~v~v~d~~~~----~~~~~~~~~~~~~~~~~~~~~p~g  255 (361)
T 2oiz_A          186 VASQSRSKQMFSVKDDPIFIAPALDKDKAHFVSYYG------NVYSADFSGD----EVKVDGPWSLLNDEDKAKNWVPGG  255 (361)
T ss_dssp             EEEEEECCCCSCTTTSCBCSCCEECSSEEEEEBTTS------EEEEEECSSS----SCEEEEEEESCCHHHHHTTCEECC
T ss_pred             EeeeccccceEcCCCCceEEEecccCCEEEEEeCCC------eEEEEEecCC----CceecccccccCccccccccccCC
Confidence            43111      11110000111111 1222211111      0111110000    0000000000      0    001


Q ss_pred             eEEEEEccCCCEEEEeeC-----------CCeEEEEECCCCceeeecccccCceeceEEEEECCCCCEEEEeeCCCcEEE
Q 021399          149 INRAVWGPLNRTIISAGE-----------DAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKL  217 (313)
Q Consensus       149 i~~~~~~~~~~~i~t~~~-----------d~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~dg~i~i  217 (313)
                      ...+.++|+++++.++..           .+.|.+||+.+++.+.++..   +.  +.+++++|||++|++++. +.|.+
T Consensus       256 ~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~i~~---~~--p~~ia~spdg~~l~v~n~-~~v~v  329 (361)
T 2oiz_A          256 YNLVGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVARIPG---RD--ALSMTIDQQRNLMLTLDG-GNVNV  329 (361)
T ss_dssp             SSCEEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEEEEEEC---TT--CCEEEEETTTTEEEEECS-SCEEE
T ss_pred             eeEEEEecCCCeEEEEEccCCCcccccCCCceEEEEECCCCcEEEEEec---CC--eeEEEECCCCCEEEEeCC-CeEEE
Confidence            112578898777666543           35899999999988877642   33  899999999999998887 99999


Q ss_pred             EECCCC--cEEEEE-ecCCceeEEEeccCCC
Q 021399          218 WDARTL--ELIKTY-VTERPVNAVTMSPLLD  245 (313)
Q Consensus       218 wd~~~~--~~~~~~-~~~~~~~~~~~~p~~~  245 (313)
                      ||++++  +.+.++ ........++++|+|.
T Consensus       330 ~D~~t~~l~~~~~i~~~G~~P~~~~~~p~G~  360 (361)
T 2oiz_A          330 YDISQPEPKLLRTIEGAAEASLQVQFHPVGG  360 (361)
T ss_dssp             EECSSSSCEEEEEETTSCSSEEEEEECCCSC
T ss_pred             EECCCCcceeeEEeccCCCCcEEEEecCCCC
Confidence            999999  998886 4455678899999874

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=99.52  E-value=1.4e-11  Score=111.78  Aligned_cols=221  Identities=13%  Similarity=0.069  Sum_probs=145.4

Q ss_pred             EccCCCEEEEeeCCCCeEEEeCCCCcEEEEecCCCCceEEEEECCCCCeEEEeeCCCcEEEEECC--CCeEEEEecCCCC
Q 021399           18 YNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVE--TGAQLFTFNFDSP   95 (313)
Q Consensus        18 fs~~g~~l~s~s~d~~i~iw~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~v~vWd~~--~~~~~~~~~~~~~   95 (313)
                      .+|.+..+++...++.|.++|.++++.+.++... ..+..+.|+|||+++++++.|+.|.+||+.  +.+.+..+.....
T Consensus       163 ~d~~~~~~V~~~~~~~V~viD~~t~~v~~~i~~g-~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~i~~G~~  241 (567)
T 1qks_A          163 WDLENLFSVTLRDAGQIALIDGSTYEIKTVLDTG-YAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSE  241 (567)
T ss_dssp             CCGGGEEEEEETTTTEEEEEETTTCCEEEEEECS-SCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCSE
T ss_pred             cCCCceEEEEeCCCCeEEEEECCCCeEEEEEeCC-CCccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEeEEEecCCC
Confidence            3455667788888999999999999999888753 356789999999999999999999999995  7777766666666


Q ss_pred             eeEEEee----cCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecC----------C-CCceEEEEEccCCC-
Q 021399           96 ARSVDFA----VGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKG----------P-QGRINRAVWGPLNR-  159 (313)
Q Consensus        96 ~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~-~~~i~~~~~~~~~~-  159 (313)
                      ...+.++    |+++.+++....    ...+.+.+.      ...+.+..+..          | ..++..+..++.+. 
T Consensus       242 P~~ia~s~~~~pDGk~l~v~n~~----~~~v~ViD~------~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~  311 (567)
T 1qks_A          242 ARSIETSKMEGWEDKYAIAGAYW----PPQYVIMDG------ETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPE  311 (567)
T ss_dssp             EEEEEECCSTTCTTTEEEEEEEE----TTEEEEEET------TTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSE
T ss_pred             CceeEEccccCCCCCEEEEEEcc----CCeEEEEEC------CCCcEEEEEeccccccccccccCCCceEEEEEcCCCCE
Confidence            7788888    466655554310    011111110      01112221110          1 22566677777654 


Q ss_pred             EEEEeeCCCeEEEEECCCCceeeecccccCceeceEEEEECCCCCEEEEee-CCCcEEEEECCCCcEEEEEec-C---Cc
Q 021399          160 TIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGS-LDKSAKLWDARTLELIKTYVT-E---RP  234 (313)
Q Consensus       160 ~i~t~~~d~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s-~dg~i~iwd~~~~~~~~~~~~-~---~~  234 (313)
                      .++...++|.|.++|..+.+.+.....  ........+.|+|+|++++++. .+++|.++|+++++.+..+.. .   .+
T Consensus       312 ~vv~~~~~g~v~~vd~~~~~~~~v~~i--~~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~kl~~~i~vgg~~Php  389 (567)
T 1qks_A          312 FIVNVKETGKILLVDYTDLNNLKTTEI--SAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHP  389 (567)
T ss_dssp             EEEEETTTTEEEEEETTCSSEEEEEEE--ECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCC
T ss_pred             EEEEecCCCeEEEEecCCCccceeeee--eccccccCceECCCCCEEEEEeCCCCeEEEEECCCCcEEEEEeccCcCCCC
Confidence            455567789999999876543222111  1223466889999999987665 578999999999988777654 2   22


Q ss_pred             eeEEE-eccCCCEEEEcc
Q 021399          235 VNAVT-MSPLLDHVVLGG  251 (313)
Q Consensus       235 ~~~~~-~~p~~~~~~~~~  251 (313)
                      ...+. ++|++..+++++
T Consensus       390 g~g~~~~~p~~g~v~~t~  407 (567)
T 1qks_A          390 GRGANFVHPTFGPVWATS  407 (567)
T ss_dssp             TTCEEEEETTTEEEEEEE
T ss_pred             ccceeeECCCCCcEEEeC
Confidence            22333 478766665543

>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*

Probab=99.50  E-value=1.4e-12  Score=112.14  Aligned_cols=171  Identities=12%  Similarity=0.018  Sum_probs=123.8

Q ss_pred             ceeEEEEccCCCEEEEeeCCCCeEEEeCCCCc----------EEEEecCCCCceEEEEECCCCCeEEEeeCCCcEEEEEC
Q 021399           12 PLTYLKYNKDGDLLFSCAKDHTPTVWFADNGE----------RLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNV   81 (313)
Q Consensus        12 ~v~~~~fs~~g~~l~s~s~d~~i~iw~~~~~~----------~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~v~vWd~   81 (313)
                      +++.+++++...++++|+.|+. ++|++++.+          .......+.+ |..++|  |++.|+.+ .++.|++||+
T Consensus        39 ~~nlLais~~~gll~a~~~~~l-~v~~~~~l~~~~~~~~~~~~~~~~~~lp~-V~~l~f--d~~~L~v~-~~~~l~v~dv  113 (388)
T 1xip_A           39 SLQNLDISNSKSLFVAASGSKA-VVGELQLLRDHITSDSTPLTFKWEKEIPD-VIFVCF--HGDQVLVS-TRNALYSLDL  113 (388)
T ss_dssp             CCBCEEEETTTTEEEEEETTEE-EEEEHHHHHHHHHSSSCCCCCSEEEECTT-EEEEEE--ETTEEEEE-ESSEEEEEES
T ss_pred             cccEEEEcCCCCEEEEeCCCEE-EEEEhhHhhhhhccccccccceEEeeCCC-eeEEEE--CCCEEEEE-cCCcEEEEEc
Confidence            6889999999999999999855 569865433          1112234667 999999  88888888 8899999998


Q ss_pred             CCCeEEEEecCCCCeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEccCCCEE
Q 021399           82 ETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTI  161 (313)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i  161 (313)
                      .+.......                                                    ..+...+.++.+.+  ..+
T Consensus       114 ~sl~~~~~~----------------------------------------------------~~~~~~v~~i~~~~--p~~  139 (388)
T 1xip_A          114 EELSEFRTV----------------------------------------------------TSFEKPVFQLKNVN--NTL  139 (388)
T ss_dssp             SSTTCEEEE----------------------------------------------------EECSSCEEEEEECS--SEE
T ss_pred             hhhhccCcc----------------------------------------------------ceeecceeeEEecC--CCE
Confidence            764321110                                                    00111223333322  238


Q ss_pred             EEeeCCCeEEEEECCCCceeeecccccCceeceEEEEECCCCCEEEEeeCCCcEEEEECCCCcE--EEEE------e---
Q 021399          162 ISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLEL--IKTY------V---  230 (313)
Q Consensus       162 ~t~~~d~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~--~~~~------~---  230 (313)
                      ++++.||.|.+||++.+....       +...|+|++|+|+|  ++.|..||++++|+.+.+++  ..++      .   
T Consensus       140 av~~~dG~L~v~dl~~~~~~~-------~~~~Vs~v~WSpkG--~~vg~~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~  210 (388)
T 1xip_A          140 VILNSVNDLSALDLRTKSTKQ-------LAQNVTSFDVTNSQ--LAVLLKDRSFQSFAWRNGEMEKQFEFSLPSELEELP  210 (388)
T ss_dssp             EEEETTSEEEEEETTTCCEEE-------EEESEEEEEECSSE--EEEEETTSCEEEEEEETTEEEEEEEECCCHHHHTSC
T ss_pred             EEEECCCCEEEEEccCCcccc-------ccCCceEEEEcCCc--eEEEEcCCcEEEEcCCCccccccceecCCccccccc
Confidence            889999999999998776532       45689999999999  78899999999999988775  5566      1   


Q ss_pred             -cCCceeEEEeccCCCEEEEc
Q 021399          231 -TERPVNAVTMSPLLDHVVLG  250 (313)
Q Consensus       231 -~~~~~~~~~~~p~~~~~~~~  250 (313)
                       ++..+.++.|.+.+..+++-
T Consensus       211 ~~~~~V~sI~wl~~~~flv~y  231 (388)
T 1xip_A          211 VEEYSPLSVTILSPQDFLAVF  231 (388)
T ss_dssp             TTTSEEEEEEESSSSEEEEEE
T ss_pred             CCCeeEEEEEEecCCeEEEEE
Confidence             34568899999987776653

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=99.50  E-value=1.8e-11  Score=101.32  Aligned_cols=185  Identities=13%  Similarity=0.094  Sum_probs=134.3

Q ss_pred             cceeEEEEccCCCEEEEeeCCCCeEEEeCCCCcEEEEecCCC-CceEEEEECCCCCeEEEeeC-CCcEEEEECCCCeEEE
Q 021399           11 RPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHN-GAVWCCDVSRDSMTLITGSA-DQTAKLWNVETGAQLF   88 (313)
Q Consensus        11 ~~v~~~~fs~~g~~l~s~s~d~~i~iw~~~~~~~~~~~~~H~-~~V~~~~~~~~~~~l~s~s~-D~~v~vWd~~~~~~~~   88 (313)
                      ..+.++.++|+|+.|+  +.++.|+.||. +++.+.+++.+. ..+.++.+.++|+.+++.+. ++.+..+|. +++.+.
T Consensus        37 ~~~~~~~~~pdG~ilv--s~~~~V~~~d~-~G~~~W~~~~~~~~~~~~~~~~~dG~~lv~~~~~~~~v~~vd~-~Gk~l~  112 (276)
T 3no2_A           37 WECNSVAATKAGEILF--SYSKGAKMITR-DGRELWNIAAPAGCEMQTARILPDGNALVAWCGHPSTILEVNM-KGEVLS  112 (276)
T ss_dssp             CCCCEEEECTTSCEEE--ECBSEEEEECT-TSCEEEEEECCTTCEEEEEEECTTSCEEEEEESTTEEEEEECT-TSCEEE
T ss_pred             CCCcCeEECCCCCEEE--eCCCCEEEECC-CCCEEEEEcCCCCccccccEECCCCCEEEEecCCCCEEEEEeC-CCCEEE
Confidence            3578899999999999  45778999998 899999998764 57889999999999998877 777777775 455544


Q ss_pred             EecCCCCeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEccCCCEEEEeeCCC
Q 021399           89 TFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDA  168 (313)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~t~~~d~  168 (313)
                      .+......                                              ..+......+...++++++++...++
T Consensus       113 ~~~~~~~~----------------------------------------------~~~~~~~~~v~~~~~G~~lv~~~~~~  146 (276)
T 3no2_A          113 KTEFETGI----------------------------------------------ERPHAQFRQINKNKKGNYLVPLFATS  146 (276)
T ss_dssp             EEEECCSC----------------------------------------------SSGGGSCSCCEECTTSCEEEEETTTT
T ss_pred             EEeccCCC----------------------------------------------CcccccccCceECCCCCEEEEecCCC
Confidence            33210000                                              00011122334577888999999999


Q ss_pred             eEEEEECCCCceeeecccccCceeceEEEEECCCCCEEEEeeCCCcEEEEECCCCcEEEEEecCC-------ceeEEEec
Q 021399          169 IVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTER-------PVNAVTMS  241 (313)
Q Consensus       169 ~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~-------~~~~~~~~  241 (313)
                      .|.+||.+ ++.+-++..    .....++...++|+.+++++.++.|..+|.++++.+.++....       .+..++..
T Consensus       147 ~v~~~d~~-G~~~w~~~~----~~~~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~l~~~~~~~~~  221 (276)
T 3no2_A          147 EVREIAPN-GQLLNSVKL----SGTPFSSAFLDNGDCLVACGDAHCFVQLNLESNRIVRRVNANDIEGVQLFFVAQLFPL  221 (276)
T ss_dssp             EEEEECTT-SCEEEEEEC----SSCCCEEEECTTSCEEEECBTTSEEEEECTTTCCEEEEEEGGGSBSCCCSEEEEEEEC
T ss_pred             EEEEECCC-CCEEEEEEC----CCCccceeEcCCCCEEEEeCCCCeEEEEeCcCCcEEEEecCCCCCCccccccccceEc
Confidence            99999998 887665542    1345567788999999999988899999999999998885321       14566677


Q ss_pred             cCCCEEEEc
Q 021399          242 PLLDHVVLG  250 (313)
Q Consensus       242 p~~~~~~~~  250 (313)
                      +++..++..
T Consensus       222 ~~G~i~v~~  230 (276)
T 3no2_A          222 QNGGLYICN  230 (276)
T ss_dssp             TTSCEEEEE
T ss_pred             CCCCEEEEe
Confidence            777655543

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=99.49  E-value=2e-11  Score=102.54  Aligned_cols=228  Identities=11%  Similarity=0.085  Sum_probs=139.5

Q ss_pred             cccccceeEEEEccCCCEEEE-------eeCCCCeEEEeCCCCcEEEEec----CCCCceEEEEECCC-CCeEEEeeCCC
Q 021399            7 KGHERPLTYLKYNKDGDLLFS-------CAKDHTPTVWFADNGERLGTYR----GHNGAVWCCDVSRD-SMTLITGSADQ   74 (313)
Q Consensus         7 ~~h~~~v~~~~fs~~g~~l~s-------~s~d~~i~iw~~~~~~~~~~~~----~H~~~V~~~~~~~~-~~~l~s~s~D~   74 (313)
                      ......+.+++|+++|..+++       +..++.|.+||..+++......    ++...+.+++++++ ++++++.. .+
T Consensus        14 ~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~g~l~v~~~-~~   92 (314)
T 1pjx_A           14 TEDIPGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVADM-RL   92 (314)
T ss_dssp             ECCCTTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEET-TT
T ss_pred             hccCCCccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEecccCCCCCCCceEEEecCCCcEEEEEC-CC
Confidence            444556789999999998888       6778999999988877543222    25567899999999 76555544 44


Q ss_pred             cEEEEECCCCeEEEE-ecCCCCeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEE
Q 021399           75 TAKLWNVETGAQLFT-FNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAV  153 (313)
Q Consensus        75 ~v~vWd~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~  153 (313)
                      .|.+||.. ++.... .....                                                ..+...+..+.
T Consensus        93 ~l~~~d~~-g~~~~~~~~~~~------------------------------------------------~~~~~~~~~i~  123 (314)
T 1pjx_A           93 GLLVVQTD-GTFEEIAKKDSE------------------------------------------------GRRMQGCNDCA  123 (314)
T ss_dssp             EEEEEETT-SCEEECCSBCTT------------------------------------------------SCBCBCCCEEE
T ss_pred             CEEEEeCC-CCEEEEEeccCC------------------------------------------------CccccCCcCEE
Confidence            78889987 543211 10000                                                00112355677


Q ss_pred             EccCCCEEEEeeCC---------------CeEEEEECCCCceeeecccccCceeceEEEEEC----CCCCEEEEe-eCCC
Q 021399          154 WGPLNRTIISAGED---------------AIVRIWDTETGKLLKESDKETGHKKTITSLAKA----ADGSHFLTG-SLDK  213 (313)
Q Consensus       154 ~~~~~~~i~t~~~d---------------~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s----~~~~~l~s~-s~dg  213 (313)
                      +.++++.+++...+               +.|..||.. ++.....    .+......++++    ++++.+..+ ..++
T Consensus       124 ~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~----~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~  198 (314)
T 1pjx_A          124 FDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQVD----TAFQFPNGIAVRHMNDGRPYQLIVAETPTK  198 (314)
T ss_dssp             ECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEEEE----EEESSEEEEEEEECTTSCEEEEEEEETTTT
T ss_pred             ECCCCCEEEEecCcccccccccccccCCCCeEEEECCC-CCEEEec----cCCCCcceEEEecccCCCCCEEEEEECCCC
Confidence            77878776666544               567778765 4432211    123346788899    999765544 5678


Q ss_pred             cEEEEECC-CCcE-----EEEEecC--CceeEEEeccCCCEEEEcccccCceeEeeccCCCceeeeeeehhhhhhhcccc
Q 021399          214 SAKLWDAR-TLEL-----IKTYVTE--RPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVK  285 (313)
Q Consensus       214 ~i~iwd~~-~~~~-----~~~~~~~--~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  285 (313)
                      .|.+||++ +++.     ...+...  .....+++++++...++..+  ...+..+|.            .+++.+..+.
T Consensus       199 ~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~~~--~~~i~~~d~------------~~g~~~~~~~  264 (314)
T 1pjx_A          199 KLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWG--SSHIEVFGP------------DGGQPKMRIR  264 (314)
T ss_dssp             EEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEET--TTEEEEECT------------TCBSCSEEEE
T ss_pred             eEEEEECCCCCccccceEEEECCCCCCCCCCceEECCCCCEEEEEcC--CCEEEEEcC------------CCCcEeEEEe
Confidence            99999986 4432     1222111  44677889988764443222  122333343            3222222333


Q ss_pred             ccccceeEEEECCCCCee
Q 021399          286 GHFGPINALAFNPDGKRY  303 (313)
Q Consensus       286 ~h~~~V~~~~fspdgk~~  303 (313)
                      .+...+.+++|+|||+.+
T Consensus       265 ~~~~~~~~i~~~~dg~~l  282 (314)
T 1pjx_A          265 CPFEKPSNLHFKPQTKTI  282 (314)
T ss_dssp             CSSSCEEEEEECTTSSEE
T ss_pred             CCCCCceeEEECCCCCEE
Confidence            445788999999999854

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=99.49  E-value=3.8e-12  Score=119.87  Aligned_cols=232  Identities=16%  Similarity=0.068  Sum_probs=137.0

Q ss_pred             cccceeEEEEccCCCEEEEeeCC-----CCeEEEeCCCCcEEEEecCCCCceEEEEECCCCCeEEEeeCCCc--------
Q 021399            9 HERPLTYLKYNKDGDLLFSCAKD-----HTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQT--------   75 (313)
Q Consensus         9 h~~~v~~~~fs~~g~~l~s~s~d-----~~i~iw~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~--------   75 (313)
                      |...+..++|||||++|+.++.+     ..|++||+++++.+.. ..+...+..++|+|| +.|+.++.|+.        
T Consensus       161 ~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~-~~~~~~~~~~~wspD-~~l~~~~~~~~~~~~~~~~  238 (741)
T 1yr2_A          161 GATALDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPLAD-ELKWVKFSGLAWLGN-DALLYSRFAEPKEGQAFQA  238 (741)
T ss_dssp             --EEEEEEEECTTSSEEEEEEEETTCSEEEEEEEETTTCCEEEE-EEEEEESCCCEESTT-SEEEEEECCCC--------
T ss_pred             CCEEEEeEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCCc-cCCCceeccEEEECC-CEEEEEEecCccccccccc
Confidence            44467889999999999887654     3599999999987543 112222356899999 88887776654        


Q ss_pred             ------EEEEECCCCeEEEEecCCCCeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCce
Q 021399           76 ------AKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRI  149 (313)
Q Consensus        76 ------v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  149 (313)
                            |++|++.+++..                                                ...+.....+...+
T Consensus       239 ~~~~~~v~~~~lgt~~~~------------------------------------------------~~lv~~~~~~~~~~  270 (741)
T 1yr2_A          239 LNYNQTVWLHRLGTPQSA------------------------------------------------DQPVFATPELPKRG  270 (741)
T ss_dssp             CCCCCEEEEEETTSCGGG------------------------------------------------CEEEECCTTCTTCE
T ss_pred             CCCCCEEEEEECCCCchh------------------------------------------------CEEEeccCCCCeEE
Confidence                  445554432100                                                00011111122346


Q ss_pred             EEEEEccCCCEEEEeeCCC-----eEEEEECCCC--ceeeecccccCceeceEEEEECCCCCEEEEeeCC----CcEEEE
Q 021399          150 NRAVWGPLNRTIISAGEDA-----IVRIWDTETG--KLLKESDKETGHKKTITSLAKAADGSHFLTGSLD----KSAKLW  218 (313)
Q Consensus       150 ~~~~~~~~~~~i~t~~~d~-----~i~lwd~~~~--~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d----g~i~iw  218 (313)
                      ..+.|+|+|++++..+.++     .|++||+.++  .....+.   .+........ +++|+.|+..+.+    +.|.+|
T Consensus       271 ~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~---~~~~~~~~~~-~~dg~~l~~~s~~~~~~~~l~~~  346 (741)
T 1yr2_A          271 HGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALI---PDLKAQWDFV-DGVGDQLWFVSGDGAPLKKIVRV  346 (741)
T ss_dssp             EEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEEE---CSSSSCEEEE-EEETTEEEEEECTTCTTCEEEEE
T ss_pred             EEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCCcccEEec---CCCCceEEEE-eccCCEEEEEECCCCCCCEEEEE
Confidence            7788999999888776543     8999998765  3123332   1222333333 4889988887764    459999


Q ss_pred             ECCCCc-EEEEEec--CCceeEEEeccCCCEEEEcccccCceeEeeccCCCceeeeeeehhhhhhhccccc-cccceeEE
Q 021399          219 DARTLE-LIKTYVT--ERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKG-HFGPINAL  294 (313)
Q Consensus       219 d~~~~~-~~~~~~~--~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-h~~~V~~~  294 (313)
                      |++++. ....+..  ...+..+++.  ++.++++...++.           ..+..++.. +.....+.. +.+.|..+
T Consensus       347 d~~~~~~~~~~l~~~~~~~l~~~~~~--~~~lv~~~~~dg~-----------~~l~~~~~~-g~~~~~l~~~~~~~v~~~  412 (741)
T 1yr2_A          347 DLSGSTPRFDTVVPESKDNLESVGIA--GNRLFASYIHDAK-----------SQVLAFDLD-GKPAGAVSLPGIGSASGL  412 (741)
T ss_dssp             ECSSSSCEEEEEECCCSSEEEEEEEE--BTEEEEEEEETTE-----------EEEEEEETT-SCEEEECBCSSSCEEEEE
T ss_pred             eCCCCccccEEEecCCCCeEEEEEEE--CCEEEEEEEECCE-----------EEEEEEeCC-CCceeeccCCCCeEEEEe
Confidence            998752 3333332  2234455554  5566665443332           122223321 222222322 35678999


Q ss_pred             EECCCCCeeEEEEE
Q 021399          295 AFNPDGKRYGFLLL  308 (313)
Q Consensus       295 ~fspdgk~~~~~~~  308 (313)
                      +++||++.+.|...
T Consensus       413 ~~s~d~~~l~~~~s  426 (741)
T 1yr2_A          413 SGRPGDRHAYLSFS  426 (741)
T ss_dssp             ECCBTCSCEEEEEE
T ss_pred             ecCCCCCEEEEEEc
Confidence            99999999887654

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=99.48  E-value=1.6e-11  Score=104.74  Aligned_cols=237  Identities=13%  Similarity=0.047  Sum_probs=128.2

Q ss_pred             cceeEEEEccCCCEEEEee---------CCCCeEEEeCCCCcEEEEecCCCCceEEEEECCCCCeEEEeeCC---C--cE
Q 021399           11 RPLTYLKYNKDGDLLFSCA---------KDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSAD---Q--TA   76 (313)
Q Consensus        11 ~~v~~~~fs~~g~~l~s~s---------~d~~i~iw~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D---~--~v   76 (313)
                      ..+...++  ||++++...         .++.|.+||+++++.. .+    ..+..++|+|||+.++..+.+   +  .|
T Consensus        15 ~~~~~~~~--dG~~i~~~~~~~~~~~~~~~~~l~~~d~~~~~~~-~l----~~~~~~~~SpDg~~la~~~~~~~~~~~~l   87 (347)
T 2gop_A           15 AYLSDPRT--KGELVAYVLTKANLKDNKYENTIVIENLKNNARR-FI----ENATMPRISPDGKKIAFMRANEEKKVSEI   87 (347)
T ss_dssp             CEEEEEEE--ETTEEEEEEEEEETTTTEEEEEEEEEETTTCCEE-EE----ESCEEEEECTTSSEEEEEEEETTTTEEEE
T ss_pred             EEcccceE--CCcEEEEEEeecCcccCCccceEEEEeCCCCceE-Ec----ccCCCeEECCCCCEEEEEEeccCCCcceE
Confidence            45677788  899887653         2567899999888653 34    568889999999988877654   3  37


Q ss_pred             EEEECCCCeEEEEecCCCCeeEEEeecCCeEEEEEC-CCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEc
Q 021399           77 KLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITT-DPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWG  155 (313)
Q Consensus        77 ~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~  155 (313)
                      .+||+.+++......... +..+.|+|+++.++... +.                ...  ...        ..+..+.+.
T Consensus        88 ~~~~~~~g~~~~l~~~~~-~~~~~wspdg~~l~~~~~~~----------------~~~--~~~--------~~~~~~~~~  140 (347)
T 2gop_A           88 WVADLETLSSKKILEAKN-IRSLEWNEDSRKLLIVGFKR----------------RED--EDF--------IFEDDVPAW  140 (347)
T ss_dssp             EEEETTTTEEEEEEEESE-EEEEEECTTSSEEEEEEECC----------------CC-------------------CCCC
T ss_pred             EEEECCCCceEEEEcCCC-ccceeECCCCCEEEEEEccC----------------CCc--CCc--------EEEccccee
Confidence            777888776554443333 55666666554333321 10                000  000        000011111


Q ss_pred             cCCCEEEEeeCCCeEEEEECCCCceeeecccccCceeceEEEEECCCCCEEEEeeCCC-------cEEEEECCCCcEEEE
Q 021399          156 PLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDK-------SAKLWDARTLELIKT  228 (313)
Q Consensus       156 ~~~~~i~t~~~d~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~dg-------~i~iwd~~~~~~~~~  228 (313)
                      .++..+. ......|.+||+.+++.+..+..    . .+..++|+||| .+++++.++       ...+|.+++++. ..
T Consensus       141 ~~g~~~~-~~~~~~l~~~d~~~~~~~~~l~~----~-~~~~~~~spdg-~~~~~~~~~~~~~~~~~~~l~~~d~~~~-~~  212 (347)
T 2gop_A          141 FDDLGFF-DGEKTTFWIFDTESEEVIEEFEK----P-RFSSGIWHRDK-IVVNVPHREIIPQYFKFWDIYIWEDGKE-EK  212 (347)
T ss_dssp             ----------CEEEEEEEETTTTEEEEEEEE----E-TTCEEEEETTE-EEEEEECCCSSCCSSCCEEEEEEETTEE-EE
T ss_pred             ecCcccc-cCccceEEEEECCCCeEEeeecC----C-CcccccCCCCe-EEEEEecccccccccccccEEEeCCCce-EE
Confidence            1111111 12246799999988765344331    2 67889999999 877776542       344554445443 33


Q ss_pred             EecCCceeEEEeccCCCEEEEcccccCceeEeeccCCCceeeeeeehhhhhhhccccccccceeE-EEECCCC
Q 021399          229 YVTERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINA-LAFNPDG  300 (313)
Q Consensus       229 ~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~-~~fspdg  300 (313)
                      +.....+  ..++|+++.++.++.....      .......+..||  +++......+|...+.. +.|+ ||
T Consensus       213 l~~~~~~--~~~spdg~~l~~~~~~~~~------~~~~~~~l~~~d--~~~~~~l~~~~~~~~~~~~~~s-dg  274 (347)
T 2gop_A          213 MFEKVSF--YAVDSDGERILLYGKPEKK------YMSEHNKLYIYD--GKEVMGILDEVDRGVGQAKIKD-GK  274 (347)
T ss_dssp             EEEEESE--EEEEECSSCEEEEECCSSS------CCCSSCEEEEEC--SSCEEESSTTCCSEEEEEEEET-TE
T ss_pred             eccCcce--eeECCCCCEEEEEEccccC------CccccceEEEEC--CCceEeccccCCcccCCccEEc-Cc
Confidence            3222223  3348999888766533210      000011233343  22222223355667776 8898 87

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=99.46  E-value=2.7e-10  Score=95.21  Aligned_cols=237  Identities=9%  Similarity=-0.006  Sum_probs=152.3

Q ss_pred             ccccccceeEEEEccCC-CEEEEeeCCCCeEEEeCCCCcEEEEecCCCCceEEEEECCCCCeEEEeeCCCcEEEEECCCC
Q 021399            6 MKGHERPLTYLKYNKDG-DLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETG   84 (313)
Q Consensus         6 l~~h~~~v~~~~fs~~g-~~l~s~s~d~~i~iw~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~v~vWd~~~~   84 (313)
                      +..+..-..+..|+|++ ..+++...++.|..||.++++.. .+ .+...+.+++++++|+++++ . ++.|.+||..++
T Consensus         8 ~~~~~~~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~~-~~-~~~~~~~~i~~~~dG~l~v~-~-~~~l~~~d~~~g   83 (297)
T 3g4e_A            8 LPENCRCGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQVQ-RV-TMDAPVSSVALRQSGGYVAT-I-GTKFCALNWKEQ   83 (297)
T ss_dssp             ECCCCSBEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEE-EE-ECSSCEEEEEEBTTSSEEEE-E-TTEEEEEETTTT
T ss_pred             eccCCccccCCeEECCCCEEEEEECCCCEEEEEECCCCcEE-EE-eCCCceEEEEECCCCCEEEE-E-CCeEEEEECCCC
Confidence            44455566789999965 56666667899999999887652 33 24567999999999996554 3 568999999887


Q ss_pred             eEEEEecCC-----CCeeEEEeecCCeEEEEECCCcee----ccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEc
Q 021399           85 AQLFTFNFD-----SPARSVDFAVGDKLAVITTDPFME----LNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWG  155 (313)
Q Consensus        85 ~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~  155 (313)
                      +........     .....+.+.+++.+.+........    ......++.+..     .+.... +.......+.++|+
T Consensus        84 ~~~~~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~-----~g~~~~-~~~~~~~pngi~~s  157 (297)
T 3g4e_A           84 SAVVLATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFP-----DHHVKK-YFDQVDISNGLDWS  157 (297)
T ss_dssp             EEEEEEECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECT-----TSCEEE-EEEEESBEEEEEEC
T ss_pred             cEEEEEecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEEC-----CCCEEE-EeeccccccceEEc
Confidence            654433221     124556677776665543211000    001112222211     111111 11222345789999


Q ss_pred             cCCCEE-EEeeCCCeEEEEEC--CCCcee--eecccccCceeceEEEEECCCCCEEEEeeCCCcEEEEECCCCcEEEEEe
Q 021399          156 PLNRTI-ISAGEDAIVRIWDT--ETGKLL--KESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYV  230 (313)
Q Consensus       156 ~~~~~i-~t~~~d~~i~lwd~--~~~~~~--~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~  230 (313)
                      |+++.+ ++.+.++.|.+||+  .++...  +.+.....+......++++++|+..++...++.|..||.++++.+..+.
T Consensus       158 pdg~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~~~~v~~~d~~tG~~~~~i~  237 (297)
T 3g4e_A          158 LDHKIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWVACYNGGRVIRLDPVTGKRLQTVK  237 (297)
T ss_dssp             TTSCEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCEEEEEETTTEEEEECTTTCCEEEEEE
T ss_pred             CCCCEEEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCEEEEEcCCCEEEEEcCCCceEEEEEE
Confidence            999865 55566789999986  455431  1111111233567889999999988888778899999999999988886


Q ss_pred             cC-CceeEEEec-cCCCEEEEccc
Q 021399          231 TE-RPVNAVTMS-PLLDHVVLGGG  252 (313)
Q Consensus       231 ~~-~~~~~~~~~-p~~~~~~~~~~  252 (313)
                      .+ ..+.+++|. |+++.++++..
T Consensus       238 ~p~~~~t~~~f~g~d~~~L~vt~~  261 (297)
T 3g4e_A          238 LPVDKTTSCCFGGKNYSEMYVTCA  261 (297)
T ss_dssp             CSSSBEEEEEEESGGGCEEEEEEB
T ss_pred             CCCCCceEEEEeCCCCCEEEEEcC
Confidence            54 568899998 88888887654

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=99.43  E-value=3.6e-09  Score=87.82  Aligned_cols=265  Identities=12%  Similarity=0.092  Sum_probs=165.2

Q ss_pred             cccccceeEEEEccCCCEEEEeeCCCCeEEEeCCCCcEEE-EecCCCCceEEEEECCCCCeEEEeeCCCcEEEEECCCCe
Q 021399            7 KGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLG-TYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGA   85 (313)
Q Consensus         7 ~~h~~~v~~~~fs~~g~~l~s~s~d~~i~iw~~~~~~~~~-~~~~H~~~V~~~~~~~~~~~l~s~s~D~~v~vWd~~~~~   85 (313)
                      ......+.++.++++|...++...++.|.+||.. ++... .+..+...+.++++.++++++++...++.|..||.. ++
T Consensus        16 ~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~-g~   93 (300)
T 2qc5_A           16 SIPDSGPYGITSSEDGKVWFTQHKANKISSLDQS-GRIKEFEVPTPDAKVMCLIVSSLGDIWFTENGANKIGKLSKK-GG   93 (300)
T ss_dssp             SSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SC
T ss_pred             CCCCCCcceeeECCCCCEEEEcCCCCeEEEECCC-CceEEEECCCCCCcceeEEECCCCCEEEEecCCCeEEEECCC-CC
Confidence            3445678899999999988887788999999987 55432 233444678999999999888877778899999988 55


Q ss_pred             EEEE-ec-CCCCeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceE-EEecCCCCceEEEEEccCCCEEE
Q 021399           86 QLFT-FN-FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESV-LILKGPQGRINRAVWGPLNRTII  162 (313)
Q Consensus        86 ~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~i~~~~~~~~~~~i~  162 (313)
                      .... .. ....+..+.+.+++.+.+.....-       .+..+  +..   +... ..+......+..+.+.++++.++
T Consensus        94 ~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~-------~i~~~--~~~---g~~~~~~~~~~~~~~~~i~~d~~g~l~v  161 (300)
T 2qc5_A           94 FTEYPLPQPDSGPYGITEGLNGDIWFTQLNGD-------RIGKL--TAD---GTIYEYDLPNKGSYPAFITLGSDNALWF  161 (300)
T ss_dssp             EEEEECSSTTCCEEEEEECSTTCEEEEETTTT-------EEEEE--CTT---SCEEEEECSSTTCCEEEEEECTTSSEEE
T ss_pred             eEEecCCCCCCCCccceECCCCCEEEEccCCC-------eEEEE--CCC---CCEEEccCCCCCCCceeEEECCCCCEEE
Confidence            4322 11 124456666766666655543110       01111  010   1111 11222345678888999999777


Q ss_pred             EeeCCCeEEEEECCCCceeeecccccCceeceEEEEECCCCCEEEEeeCCCcEEEEECCCCcEEEEEe--cCCceeEEEe
Q 021399          163 SAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYV--TERPVNAVTM  240 (313)
Q Consensus       163 t~~~d~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~--~~~~~~~~~~  240 (313)
                      +...++.|..+|. +++... +. ...+...+..++++++|...++....+.|..||. +++......  ....+..+++
T Consensus       162 ~~~~~~~i~~~~~-~g~~~~-~~-~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~  237 (300)
T 2qc5_A          162 TENQNNSIGRITN-TGKLEE-YP-LPTNAAAPVGITSGNDGALWFVEIMGNKIGRITT-TGEISEYDIPTPNARPHAITA  237 (300)
T ss_dssp             EETTTTEEEEECT-TCCEEE-EE-CSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEE
T ss_pred             EecCCCeEEEECC-CCcEEE-ee-CCCCCCCcceEEECCCCCEEEEccCCCEEEEEcC-CCcEEEEECCCCCCCceEEEE
Confidence            7666789999998 554332 21 1123456889999999987777767788999998 555433211  1345778899


Q ss_pred             ccCCCEEEEcccccCceeEeeccCCCceeeeeeehhhhhhhccccccccceeEEEECCCCCee
Q 021399          241 SPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKRY  303 (313)
Q Consensus       241 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~fspdgk~~  303 (313)
                      .+++. ++++... ...+..++. .+.+.  .+.         +......+.+++++|+|+.+
T Consensus       238 d~~g~-l~v~~~~-~~~i~~~~~-~g~~~--~~~---------~~~~~~~~~~i~~~~~g~l~  286 (300)
T 2qc5_A          238 GKNSE-IWFTEWG-ANQIGRITN-DNTIQ--EYQ---------LQTENAEPHGITFGKDGSVW  286 (300)
T ss_dssp             CSTTC-EEEEETT-TTEEEEECT-TSCEE--EEE---------CCSTTCCCCCEEECTTSCEE
T ss_pred             CCCCC-EEEeccC-CCeEEEECC-CCcEE--EEE---------CCccCCccceeEeCCCCCEE
Confidence            98876 4444322 233444454 22221  111         11234567899999998853

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=99.40  E-value=2.5e-10  Score=96.86  Aligned_cols=221  Identities=11%  Similarity=0.004  Sum_probs=141.0

Q ss_pred             cceeEEEEccCCCEEEEeeCCCCeEEEeCCCCcEEEEecCCC-----CceEEEEECCCCCeEEEee-CCCcEEEEECCCC
Q 021399           11 RPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHN-----GAVWCCDVSRDSMTLITGS-ADQTAKLWNVETG   84 (313)
Q Consensus        11 ~~v~~~~fs~~g~~l~s~s~d~~i~iw~~~~~~~~~~~~~H~-----~~V~~~~~~~~~~~l~s~s-~D~~v~vWd~~~~   84 (313)
                      ..+..++|+++++.+++...++.|.+||.++++...++....     .....+++ .+++++++.. .+++|.++|+.++
T Consensus        84 ~~p~~i~~~~~g~lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~-~~~~lyv~~~~~~~~v~viD~~t~  162 (328)
T 3dsm_A           84 TSPRYIHFLSDEKAYVTQIWDYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQ-YGKYVYVNCWSYQNRILKIDTETD  162 (328)
T ss_dssp             SSEEEEEEEETTEEEEEEBSCSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEE-ETTEEEEEECTTCCEEEEEETTTT
T ss_pred             CCCcEEEEeCCCeEEEEECCCCeEEEEECCCCeEEEEEEcCCccccCCCcceEEE-ECCEEEEEcCCCCCEEEEEECCCC
Confidence            457889999999555555489999999999998877776433     13445666 4455555543 4899999999999


Q ss_pred             eEEEEecCCCCeeEEEeecCCeEEEEECCCceecc---ccceeeeeeeCCCCCCCceEEEecCC-CCceEEEEEccCCCE
Q 021399           85 AQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELN---SAIHVKRIARDPADQGGESVLILKGP-QGRINRAVWGPLNRT  160 (313)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~~~~~~~  160 (313)
                      +.+..+........+.+.+++++.+..........   ....+..+  +.  ...+....+..+ ......++++|++++
T Consensus       163 ~~~~~i~~g~~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~i--d~--~t~~v~~~~~~~~g~~p~~la~~~d~~~  238 (328)
T 3dsm_A          163 KVVDELTIGIQPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRI--DA--ETFTVEKQFKFKLGDWPSEVQLNGTRDT  238 (328)
T ss_dssp             EEEEEEECSSCBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEE--ET--TTTEEEEEEECCTTCCCEEEEECTTSCE
T ss_pred             eEEEEEEcCCCccceEEcCCCCEEEEECCCccCCccccCCceEEEE--EC--CCCeEEEEEecCCCCCceeEEEecCCCE
Confidence            88777766555566777887776655433210000   00011111  11  112222233222 235678999999888


Q ss_pred             EEEeeCCCeEEEEECCCCceeeecccccCceeceEEEEECC-CCCEEEEe----eCCCcEEEEECCCCcEEEEEecCCce
Q 021399          161 IISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAA-DGSHFLTG----SLDKSAKLWDARTLELIKTYVTERPV  235 (313)
Q Consensus       161 i~t~~~d~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~-~~~~l~s~----s~dg~i~iwd~~~~~~~~~~~~~~~~  235 (313)
                      +.++..  .|.+||..+++...... ..........++++| ++...++.    ..++.|.+||.+ ++.+.++......
T Consensus       239 lyv~~~--~v~~~d~~t~~~~~~~~-~~~~~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~~-g~~~~~i~~G~~P  314 (328)
T 3dsm_A          239 LYWINN--DIWRMPVEADRVPVRPF-LEFRDTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYSPQ-GKLIDEFYVGIIP  314 (328)
T ss_dssp             EEEESS--SEEEEETTCSSCCSSCS-BCCCSSCEEEEEECTTTCCEEEEECTTSSSEEEEEEECTT-CCEEEEEEEEESE
T ss_pred             EEEEcc--EEEEEECCCCceeeeee-ecCCCCceEEEEEcCCCCeEEEEcccccccCCEEEEECCC-CCEEEEEEeccCc
Confidence            877655  89999998876532211 111245688899999 56666665    568899999998 8888887644434


Q ss_pred             eEEEe
Q 021399          236 NAVTM  240 (313)
Q Consensus       236 ~~~~~  240 (313)
                      ..++|
T Consensus       315 ~~~~~  319 (328)
T 3dsm_A          315 GAFCW  319 (328)
T ss_dssp             EEEEE
T ss_pred             ceEEE
Confidence            44444

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=99.39  E-value=2.2e-10  Score=95.49  Aligned_cols=227  Identities=12%  Similarity=0.059  Sum_probs=137.9

Q ss_pred             EEEEecCCCCceEEEEECCCCC-eEEEeeCCCcEEEEECCCCeEEEEecCCCCeeEEEeecCCeEEEEECCCceeccccc
Q 021399           44 RLGTYRGHNGAVWCCDVSRDSM-TLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAI  122 (313)
Q Consensus        44 ~~~~~~~H~~~V~~~~~~~~~~-~l~s~s~D~~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  122 (313)
                      .+..+..+.....+++|+|+++ +++++..++.|..||..++ ..........+..+.+.+++.+.+.....     ..+
T Consensus        19 ~~~~l~~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~-~~~~~~~~~~~~~l~~~~dg~l~v~~~~~-----~~i   92 (296)
T 3e5z_A           19 EARRLADGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ-LSPEMHPSHHQNGHCLNKQGHLIACSHGL-----RRL   92 (296)
T ss_dssp             CCEEEECCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC-EEEEESSCSSEEEEEECTTCCEEEEETTT-----TEE
T ss_pred             cEEEEecCCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC-eEEEECCCCCcceeeECCCCcEEEEecCC-----CeE
Confidence            3445555666778999999998 7888888999999999887 32222234456778888877766654321     001


Q ss_pred             eeeeeeeCCCCCCCceEEEec---C-CCCceEEEEEccCCCEEEE----ee-------------CCCeEEEEECCCCcee
Q 021399          123 HVKRIARDPADQGGESVLILK---G-PQGRINRAVWGPLNRTIIS----AG-------------EDAIVRIWDTETGKLL  181 (313)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~~~---~-~~~~i~~~~~~~~~~~i~t----~~-------------~d~~i~lwd~~~~~~~  181 (313)
                      ..++    ..  .+.......   + ....++.++++|+|+.+++    |+             ..+.|..++.. ++. 
T Consensus        93 ~~~d----~~--~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~~-  164 (296)
T 3e5z_A           93 ERQR----EP--GGEWESIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GTL-  164 (296)
T ss_dssp             EEEC----ST--TCCEEEEECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SCE-
T ss_pred             EEEc----CC--CCcEEEEeeccCCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCC-CCE-
Confidence            1110    00  111111111   1 1234567889999998887    33             13467777765 432 


Q ss_pred             eecccccCceeceEEEEECCCCCEEEEeeCCCcEEEEECC-CCcE---EEEEe-cCCceeEEEeccCCCEEEEcccccCc
Q 021399          182 KESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDAR-TLEL---IKTYV-TERPVNAVTMSPLLDHVVLGGGQDAS  256 (313)
Q Consensus       182 ~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~dg~i~iwd~~-~~~~---~~~~~-~~~~~~~~~~~p~~~~~~~~~~~~~~  256 (313)
                      ..+.   .+......++|+|+++.+++.+.++.|.+||++ +++.   ...+. ....+..+++++++... ++.   ..
T Consensus       165 ~~~~---~~~~~~~gi~~s~dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~p~~i~~d~~G~l~-v~~---~~  237 (296)
T 3e5z_A          165 SAPI---RDRVKPNGLAFLPSGNLLVSDTGDNATHRYCLNARGETEYQGVHFTVEPGKTDGLRVDAGGLIW-ASA---GD  237 (296)
T ss_dssp             EEEE---CCCSSEEEEEECTTSCEEEEETTTTEEEEEEECSSSCEEEEEEEECCSSSCCCSEEEBTTSCEE-EEE---TT
T ss_pred             EEee---cCCCCCccEEECCCCCEEEEeCCCCeEEEEEECCCCcCcCCCeEeeCCCCCCCeEEECCCCCEE-EEc---CC
Confidence            2221   244567889999999998888888999999987 4554   22221 22345678999988744 433   22


Q ss_pred             eeEeeccCCCceeeeeeehhhhhhhccccccccceeEEEE-CCCCCeeEE
Q 021399          257 AVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAF-NPDGKRYGF  305 (313)
Q Consensus       257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~f-spdgk~~~~  305 (313)
                      .+..++..             ++.+..+..+.. +++++| +||++.+..
T Consensus       238 ~v~~~~~~-------------g~~~~~~~~~~~-~~~~~f~~~d~~~L~v  273 (296)
T 3e5z_A          238 GVHVLTPD-------------GDELGRVLTPQT-TSNLCFGGPEGRTLYM  273 (296)
T ss_dssp             EEEEECTT-------------SCEEEEEECSSC-CCEEEEESTTSCEEEE
T ss_pred             eEEEECCC-------------CCEEEEEECCCC-ceeEEEECCCCCEEEE
Confidence            34444432             222233344555 899999 689887654

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=99.39  E-value=4.3e-11  Score=111.95  Aligned_cols=178  Identities=11%  Similarity=0.075  Sum_probs=113.9

Q ss_pred             ccCCCEEEEeeCCC---CeEEEeC--CCCcEEEEe------cCCCCceEEEEECCCCCeEE-----EeeCCCcEEEEECC
Q 021399           19 NKDGDLLFSCAKDH---TPTVWFA--DNGERLGTY------RGHNGAVWCCDVSRDSMTLI-----TGSADQTAKLWNVE   82 (313)
Q Consensus        19 s~~g~~l~s~s~d~---~i~iw~~--~~~~~~~~~------~~H~~~V~~~~~~~~~~~l~-----s~s~D~~v~vWd~~   82 (313)
                      +|+|++++....++   .-.||..  ..++....+      ++|...+.+++|||||++++     +|+.+.+|++||+.
T Consensus        76 ~~dG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~d~~~~a~~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~  155 (695)
T 2bkl_A           76 SRRNGRFFYVRTHKDKEKAILYWRQGESGQEKVLLDPNGWSKDGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVD  155 (695)
T ss_dssp             EEETTEEEEEEECTTCSSCEEEEEESTTSCCEEEECGGGSSSSSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETT
T ss_pred             EEECCEEEEEEEcCCCeEEEEEEEcCCCCCcEEEEchHHhccCCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECC
Confidence            48899888877654   3556643  344322222      25666789999999999888     56667899999998


Q ss_pred             CCeEEEEecCCCCeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEccCCCEEE
Q 021399           83 TGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTII  162 (313)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~  162 (313)
                      +++.+.  .  ..                                              +.  ......+.|+|+++.|+
T Consensus       156 tg~~~~--~--~~----------------------------------------------~~--~~~~~~~~wspDg~~l~  183 (695)
T 2bkl_A          156 SGEWSK--V--DV----------------------------------------------IE--GGKYATPKWTPDSKGFY  183 (695)
T ss_dssp             TCCBCS--S--CC----------------------------------------------BS--CCTTCCCEECTTSSEEE
T ss_pred             CCCCcC--C--cc----------------------------------------------cC--cccccceEEecCCCEEE
Confidence            875310  0  00                                              00  00113467899999898


Q ss_pred             EeeCCCe-------------EEEEECCCCcee-eecccccCceeceEEEEECCCCCEEEEeeCCC----cEEEEECCCCc
Q 021399          163 SAGEDAI-------------VRIWDTETGKLL-KESDKETGHKKTITSLAKAADGSHFLTGSLDK----SAKLWDARTLE  224 (313)
Q Consensus       163 t~~~d~~-------------i~lwd~~~~~~~-~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~dg----~i~iwd~~~~~  224 (313)
                      .++.|..             |++|++.++..- ..+.....|...+..+.|+|||++|+.++.++    .|.+||..+++
T Consensus       184 ~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~~  263 (695)
T 2bkl_A          184 YEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGKYLFVYILRGWSENDVYWKRPGEKD  263 (695)
T ss_dssp             EEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTSCCEEEEEEETTTEEEEEEECTTCSS
T ss_pred             EEEecCCCCCccccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECCCCCEEEEEEeCCCCceEEEEEcCCCCc
Confidence            8887765             999999876521 11111223455788999999999999888776    67778776655


Q ss_pred             EEEEEecCCceeEEEeccCCCEEEEc
Q 021399          225 LIKTYVTERPVNAVTMSPLLDHVVLG  250 (313)
Q Consensus       225 ~~~~~~~~~~~~~~~~~p~~~~~~~~  250 (313)
                      ...-...........+ |+++ +++.
T Consensus       264 ~~~l~~~~~~~~~~~~-~~g~-l~~~  287 (695)
T 2bkl_A          264 FRLLVKGVGAKYEVHA-WKDR-FYVL  287 (695)
T ss_dssp             CEEEEECSSCCEEEEE-ETTE-EEEE
T ss_pred             eEEeecCCCceEEEEe-cCCc-EEEE
Confidence            4333333333444445 5666 5554

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=99.38  E-value=3.2e-09  Score=91.63  Aligned_cols=270  Identities=13%  Similarity=0.007  Sum_probs=154.8

Q ss_pred             EEccCCCEEEEeeC--CC---CeEEEeCCCCcEEEEecCCCCceEEEEECCCCCeEEEee----------CCCcEEEEEC
Q 021399           17 KYNKDGDLLFSCAK--DH---TPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGS----------ADQTAKLWNV   81 (313)
Q Consensus        17 ~fs~~g~~l~s~s~--d~---~i~iw~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s----------~D~~v~vWd~   81 (313)
                      ...|++++++....  ..   .|.++|.++++.+.++.....+  .++++||++.++.+.          .+++|.+||+
T Consensus        27 ~~~~~~~~~yv~~~~~~~~~~~v~v~D~~t~~~~~~i~~g~~p--~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~  104 (373)
T 2mad_H           27 APGADGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVNGGFLP--NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDP  104 (373)
T ss_pred             cCCCCCCEEEEeCCcccCCccEEEEEECCCCeEEEEecCCCCC--CeEECCCCCEEEEEeccccccccCCCCCeEEEEEC
Confidence            45688888887764  22   7899999999998888764444  899999999887775          3688999999


Q ss_pred             CCCeEEEEecCC--------CCeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEE-ecCCCCceEEE
Q 021399           82 ETGAQLFTFNFD--------SPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLI-LKGPQGRINRA  152 (313)
Q Consensus        82 ~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~~  152 (313)
                      .+.+.+..+...        .....+.++|+++.+++.....   ...+.+.+ .      .++.+.. +....    ++
T Consensus       105 ~t~~~~~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~~---~~~v~viD-~------t~~~~~~~i~~~~----~~  170 (373)
T 2mad_H          105 VTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAA---GPAVGLVV-Q------GGSSDDQLLSSPT----CY  170 (373)
T ss_pred             CCCcEEEEEECCCccccccCCCccceEECCCCCEEEEEecCC---CCeEEEEE-C------CCCEEeEEcCCCc----eE
Confidence            988776655432        2345678888877766643210   01111111 1      1222222 22111    12


Q ss_pred             EEccCC-CEEEEeeCCCeEEEEECCCCceeeeccc---ccCceeceEEEEECCCCCEEEEeeCCCcEEEEECCCCc--EE
Q 021399          153 VWGPLN-RTIISAGEDAIVRIWDTETGKLLKESDK---ETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLE--LI  226 (313)
Q Consensus       153 ~~~~~~-~~i~t~~~d~~i~lwd~~~~~~~~~~~~---~~~h~~~v~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~--~~  226 (313)
                      .+.|.+ +.+++.+.|+.+.++|. +++.......   ..+.........+.+++..++..+.++.+.+.|+.+..  .+
T Consensus       171 ~~~~~~~~~~~~~~~dg~~~~vd~-~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~v~vid~~~~~~~v~  249 (373)
T 2mad_H          171 HIHPGAPSTFYLLCAQGGLAKTDH-AGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAAGATNK  249 (373)
T ss_pred             EEEeCCCceEEEEcCCCCEEEEEC-CCcEEEEEeccccccCCcceeecceeEecCCEEEEEcCCceEEEEeccCCcceEe
Confidence            233443 45566778999999999 7765532110   01111112234556666655555578899999987653  22


Q ss_pred             EEEec-----------CCceeEEEeccCCCEEEEcccccCceeEeeccCCCceeeeeeehhhhhhhccccccccceeEEE
Q 021399          227 KTYVT-----------ERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALA  295 (313)
Q Consensus       227 ~~~~~-----------~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~  295 (313)
                      ..+..           +.....++++|+++.++++......    +.++....++..+|..+.+.+..+. -....+.++
T Consensus       250 ~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~----~~~~~~~~~V~VID~~t~~vv~~i~-~g~~p~~i~  324 (373)
T 2mad_H          250 APIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSA----WKLHAAAKEVTSVTGLVGQTSSQIS-LGHDVDAIS  324 (373)
T ss_pred             eeeeecCCcccccceecCceEeEEECCCCCEEEEEeccCCc----ccccCCCCeEEEEECCCCEEEEEEE-CCCCcCeEE
Confidence            32211           1112336677777766665321000    0001111234555665555544443 234679999


Q ss_pred             ECCCCCeeEEEEE
Q 021399          296 FNPDGKRYGFLLL  308 (313)
Q Consensus       296 fspdgk~~~~~~~  308 (313)
                      |+||||++.|...
T Consensus       325 ~s~Dg~~~l~v~~  337 (373)
T 2mad_H          325 VAQDGGPDLYALS  337 (373)
T ss_pred             ECCCCCeEEEEEc
Confidence            9999997666543

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=99.37  E-value=2.4e-10  Score=97.98  Aligned_cols=233  Identities=10%  Similarity=0.033  Sum_probs=141.6

Q ss_pred             EEEEccCCCEEEEee----------CCCCeEEEeCCCCcEEEEecCCC-------CceEEEEECCCCCeEEEeeC--CCc
Q 021399           15 YLKYNKDGDLLFSCA----------KDHTPTVWFADNGERLGTYRGHN-------GAVWCCDVSRDSMTLITGSA--DQT   75 (313)
Q Consensus        15 ~~~fs~~g~~l~s~s----------~d~~i~iw~~~~~~~~~~~~~H~-------~~V~~~~~~~~~~~l~s~s~--D~~   75 (313)
                      .+.+||||++|+.++          .++.|.+||..+.+.+.++.-..       ..-..++|+|||++++.+..  ++.
T Consensus        82 ~va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t~~v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~~  161 (386)
T 3sjl_D           82 NPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPA  161 (386)
T ss_dssp             EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCE
T ss_pred             cEEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCeEEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCCCe
Confidence            399999999988776          36789999999999988774211       13346899999998877753  689


Q ss_pred             EEEEECCCCeEEEEecCCCC--------eeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCC
Q 021399           76 AKLWNVETGAQLFTFNFDSP--------ARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQG  147 (313)
Q Consensus        76 v~vWd~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  147 (313)
                      |.++|+.+++.+..+.....        ...+..+++++++++.......+      ........+          -...
T Consensus       162 VsVID~~t~~vv~tI~v~g~~~~~P~g~~~~~~~~~DG~~~~v~~~~~g~v------~~~~~~~~~----------~~~~  225 (386)
T 3sjl_D          162 VGVVDLEGKAFKRMLDVPDCYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTP------EITHTEVFH----------PEDE  225 (386)
T ss_dssp             EEEEETTTTEEEEEEECCSEEEEEEEETTEEEEEETTSCEEEEECCSSSCC------EEEECCCCS----------CTTS
T ss_pred             EEEEECCCCcEEEEEECCCcceeecCCCceeEEECCCCCEEEEECCCCCeE------EEeecceec----------cccc
Confidence            99999999998877654321        01123344444444433211110      000000000          0001


Q ss_pred             ce-EEEEE-ccCCCEEEEeeCCCeEEEEECCCCc--eeeecccc------cC-ceeceEEEEECCCCCEEEEeeC-----
Q 021399          148 RI-NRAVW-GPLNRTIISAGEDAIVRIWDTETGK--LLKESDKE------TG-HKKTITSLAKAADGSHFLTGSL-----  211 (313)
Q Consensus       148 ~i-~~~~~-~~~~~~i~t~~~d~~i~lwd~~~~~--~~~~~~~~------~~-h~~~v~~~~~s~~~~~l~s~s~-----  211 (313)
                      ++ ....| .++++.+ ..+.++.|++.|.....  .+......      .+ .......++++++++.++....     
T Consensus       226 ~~~~~~~~~~~dG~~~-~vs~~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~~~~~lyV~~~~~~~~  304 (386)
T 3sjl_D          226 FLINHPAYSQKAGRLV-WPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEW  304 (386)
T ss_dssp             CBCSCCEEETTTTEEE-EEBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTT
T ss_pred             cccccceeEcCCCcEE-EEeCCCEEEEEECCCCcceeecceeccccccccccccCCCcceeeECCCCCeEEEEecccccc
Confidence            11 11234 3556443 35668999999986553  22221100      01 1123345677899998887653     


Q ss_pred             -----CCcEEEEECCCCcEEEEEecCCceeEEEeccCCC-EEEEcccccCceeEeeccCC
Q 021399          212 -----DKSAKLWDARTLELIKTYVTERPVNAVTMSPLLD-HVVLGGGQDASAVTTTDHRA  265 (313)
Q Consensus       212 -----dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~p~~~-~~~~~~~~~~~~~~~~~~~~  265 (313)
                           .+.|.+.|+++++.+..+.....+..++++|++. .++++.+. .+.+.+.|...
T Consensus       305 ~hk~~~~~V~viD~~t~kv~~~i~vg~~~~~lavs~D~~~~ly~tn~~-~~~VsViD~~t  363 (386)
T 3sjl_D          305 RHKTASRFVVVLDAKTGERLAKFEMGHEIDSINVSQDEKPLLYALSTG-DKTLYIHDAES  363 (386)
T ss_dssp             CTTSCEEEEEEEETTTCCEEEEEEEEEEECEEEECSSSSCEEEEEETT-TTEEEEEETTT
T ss_pred             ccCCCCCEEEEEECCCCeEEEEEECCCCcceEEECCCCCeEEEEEcCC-CCeEEEEECCC
Confidence                 2579999999999999998777889999999997 56654332 23344444433

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=99.36  E-value=4.6e-11  Score=111.66  Aligned_cols=229  Identities=15%  Similarity=0.104  Sum_probs=134.7

Q ss_pred             ccccceeEEEEccCCCEEEE-----eeCCCCeEEEeCCCCcEEEE-ecCCCCceEEEEECCCCCeEEEeeCCCc------
Q 021399            8 GHERPLTYLKYNKDGDLLFS-----CAKDHTPTVWFADNGERLGT-YRGHNGAVWCCDVSRDSMTLITGSADQT------   75 (313)
Q Consensus         8 ~h~~~v~~~~fs~~g~~l~s-----~s~d~~i~iw~~~~~~~~~~-~~~H~~~V~~~~~~~~~~~l~s~s~D~~------   75 (313)
                      +|...+..++|||||++|+-     |+.+..|++||+++++.+.. +.+.  ....++|+ |++.|+-++.|..      
T Consensus       126 ~~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~~~~~--k~~~~~Ws-Dg~~l~y~~~~~~~~~~~~  202 (693)
T 3iuj_A          126 DGTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLETPLKDV--KFSGISWL-GNEGFFYSSYDKPDGSELS  202 (693)
T ss_dssp             TSCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEEEEEEE--ESCCCEEE-TTTEEEEEESSCCC-----
T ss_pred             CCcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCccccCCc--eeccEEEe-CCCEEEEEEecCccccccc
Confidence            45556888999999998884     33446799999999986532 2211  12467899 9998887777643      


Q ss_pred             -------EEEEECCCCeEEEEecCCCCeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEe--cC-C
Q 021399           76 -------AKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLIL--KG-P  145 (313)
Q Consensus        76 -------v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~-~  145 (313)
                             |++|++.++..                                                  +.....  .. +
T Consensus       203 ~~~~~~~v~~~~lgt~~~--------------------------------------------------~~~~v~~~~~~~  232 (693)
T 3iuj_A          203 ARTDQHKVYFHRLGTAQE--------------------------------------------------DDRLVFGAIPAQ  232 (693)
T ss_dssp             --CCCCEEEEEETTSCGG--------------------------------------------------GCEEEESCSGGG
T ss_pred             ccCCCcEEEEEECCCCcc--------------------------------------------------cceEEEecCCCC
Confidence                   66666544321                                                  001111  11 2


Q ss_pred             CCceEEEEEccCCCEEEEee----CCCeEEEEECCCCc-eeeecccccCceeceEEEEECCCCCEEE-EeeCC---CcEE
Q 021399          146 QGRINRAVWGPLNRTIISAG----EDAIVRIWDTETGK-LLKESDKETGHKKTITSLAKAADGSHFL-TGSLD---KSAK  216 (313)
Q Consensus       146 ~~~i~~~~~~~~~~~i~t~~----~d~~i~lwd~~~~~-~~~~~~~~~~h~~~v~~~~~s~~~~~l~-s~s~d---g~i~  216 (313)
                      ......+.|+|++++++...    .+..|+++|+.++. ....+.   .+....... ++++|..|+ ....|   +.|.
T Consensus       233 ~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l~---~~~~~~~~~-~~~~g~~l~~~t~~~~~~~~l~  308 (693)
T 3iuj_A          233 HHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAPLLTVQ---GDLDADVSL-VDNKGSTLYLLTNRDAPNRRLV  308 (693)
T ss_dssp             CCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCCCEEEE---CSSSSCEEE-EEEETTEEEEEECTTCTTCEEE
T ss_pred             CeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCceEEEe---CCCCceEEE-EeccCCEEEEEECCCCCCCEEE
Confidence            23355678899998875433    23589999987653 223332   233333443 555666554 44333   5789


Q ss_pred             EEECCCCcE--EEEEe-cCCceeEEEeccCCCEEEEcccccCc-eeEeeccCCCceeeeeeehhhhhhhccc-cccccce
Q 021399          217 LWDARTLEL--IKTYV-TERPVNAVTMSPLLDHVVLGGGQDAS-AVTTTDHRAGKFEAKFFDKILQEEIGGV-KGHFGPI  291 (313)
Q Consensus       217 iwd~~~~~~--~~~~~-~~~~~~~~~~~p~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~h~~~V  291 (313)
                      .+|++++..  .+.+. +...+.  .|+|+++.+++....++. .+..++...+.             ...+ ....+.+
T Consensus       309 ~~d~~~~~~~~~~~l~~~~~~~~--~~s~~g~~lv~~~~~~g~~~l~~~d~~g~~-------------~~~l~~p~~~~~  373 (693)
T 3iuj_A          309 TVDAANPGPAHWRDLIPERQQVL--TVHSGSGYLFAEYMVDATARVEQFDYEGKR-------------VREVALPGLGSV  373 (693)
T ss_dssp             EEETTSCCGGGCEEEECCCSSCE--EEEEETTEEEEEEEETTEEEEEEECTTSCE-------------EEEECCSSSSEE
T ss_pred             EEeCCCCCccccEEEecCCCCEE--EEEEECCEEEEEEEECCeeEEEEEECCCCe-------------eEEeecCCCceE
Confidence            999987654  23333 222232  889999988876544432 23333332111             1111 1234567


Q ss_pred             eEEEECCCCCeeEEEEE
Q 021399          292 NALAFNPDGKRYGFLLL  308 (313)
Q Consensus       292 ~~~~fspdgk~~~~~~~  308 (313)
                      ..++++||++.+.|...
T Consensus       374 ~~~~~~~d~~~l~~~~s  390 (693)
T 3iuj_A          374 SGFNGKHDDPALYFGFE  390 (693)
T ss_dssp             EECCCCTTCSCEEEEEE
T ss_pred             EeeecCCCCCEEEEEec
Confidence            78888999999887653

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=99.36  E-value=5.9e-09  Score=89.92  Aligned_cols=237  Identities=8%  Similarity=-0.043  Sum_probs=135.4

Q ss_pred             EEEEccCCCEEEEee----------CCCCeEEEeCCCCcEEEEecCC-------CCceEEEEECCCCCeEEEeeC--CCc
Q 021399           15 YLKYNKDGDLLFSCA----------KDHTPTVWFADNGERLGTYRGH-------NGAVWCCDVSRDSMTLITGSA--DQT   75 (313)
Q Consensus        15 ~~~fs~~g~~l~s~s----------~d~~i~iw~~~~~~~~~~~~~H-------~~~V~~~~~~~~~~~l~s~s~--D~~   75 (313)
                      .+.|||||++|+.+.          .++.|.+||..+.+.+.++.--       ...-..++|+|||++++.+..  ++.
T Consensus        70 ~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~~~~~  149 (373)
T 2mad_H           70 NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPA  149 (373)
T ss_pred             CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCCcEEEEEECCCccccccCCCccceEECCCCCEEEEEecCCCCe
Confidence            799999999999886          3678999999998887766421       122346899999999888764  578


Q ss_pred             EEEEECCCCeEEEE-ecCCCCeeEEEeecCC--eEEEEECCCcee-ccccceeeeeeeCCCCCCCceEEEecCCCCceEE
Q 021399           76 AKLWNVETGAQLFT-FNFDSPARSVDFAVGD--KLAVITTDPFME-LNSAIHVKRIARDPADQGGESVLILKGPQGRINR  151 (313)
Q Consensus        76 v~vWd~~~~~~~~~-~~~~~~~~~~~~~~~~--~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~  151 (313)
                      |.++| .+++.+.. +.....   +.+.+.+  .+.....+.... +............      ..  ...+.......
T Consensus       150 v~viD-~t~~~~~~~i~~~~~---~~~~~~~~~~~~~~~~dg~~~~vd~~g~~~~~~~~------~~--~~~~~~p~~~~  217 (373)
T 2mad_H          150 VGLVV-QGGSSDDQLLSSPTC---YHIHPGAPSTFYLLCAQGGLAKTDHAGGAAGAGLV------GA--MLTAAQNLLTQ  217 (373)
T ss_pred             EEEEE-CCCCEEeEEcCCCce---EEEEeCCCceEEEEcCCCCEEEEECCCcEEEEEec------cc--cccCCcceeec
Confidence            99999 99887766 543221   2222211  111111111100 0000000000000      00  00011101112


Q ss_pred             EEEccCCCEEEEeeCCCeEEEEECCCCce--eeeccccc------C-ceeceEEEEECCCCCEEEEeeC----------C
Q 021399          152 AVWGPLNRTIISAGEDAIVRIWDTETGKL--LKESDKET------G-HKKTITSLAKAADGSHFLTGSL----------D  212 (313)
Q Consensus       152 ~~~~~~~~~i~t~~~d~~i~lwd~~~~~~--~~~~~~~~------~-h~~~v~~~~~s~~~~~l~s~s~----------d  212 (313)
                      ..+.+++..++..+..+.+.+.|+.....  +..+....      + .......++++++++.+..+..          +
T Consensus       218 ~~~~~~~~~~~~~~~~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~  297 (373)
T 2mad_H          218 PAQANKSGRIVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAA  297 (373)
T ss_pred             ceeEecCCEEEEEcCCceEEEEeccCCcceEeeeeeecCCcccccceecCceEeEEECCCCCEEEEEeccCCcccccCCC
Confidence            33444444444444678899999865421  12111000      0 0122344778999998877653          3


Q ss_pred             CcEEEEECCCCcEEEEEecCCceeEEEeccCCC-EEEEcccccCceeEeeccC
Q 021399          213 KSAKLWDARTLELIKTYVTERPVNAVTMSPLLD-HVVLGGGQDASAVTTTDHR  264 (313)
Q Consensus       213 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~p~~~-~~~~~~~~~~~~~~~~~~~  264 (313)
                      +.|.++|+++++.+.++........++|+|+++ .++++. ...+.+.+.|..
T Consensus       298 ~~V~VID~~t~~vv~~i~~g~~p~~i~~s~Dg~~~l~v~~-~~~~~V~ViD~~  349 (373)
T 2mad_H          298 KEVTSVTGLVGQTSSQISLGHDVDAISVAQDGGPDLYALS-AGTEVLHIYDAG  349 (373)
T ss_pred             CeEEEEECCCCEEEEEEECCCCcCeEEECCCCCeEEEEEc-CCCCeEEEEECC
Confidence            579999999999999997777789999999999 555543 223344444443

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=99.35  E-value=3.6e-10  Score=92.69  Aligned_cols=185  Identities=8%  Similarity=-0.047  Sum_probs=125.9

Q ss_pred             cccceeEEEEccCCCEEEEeeCCCCeEEEeCCCCcEEEEec-CCCCceEEEEECCCCCeEEEeeCCCcEEEEECCCCeEE
Q 021399            9 HERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYR-GHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQL   87 (313)
Q Consensus         9 h~~~v~~~~fs~~g~~l~s~s~d~~i~iw~~~~~~~~~~~~-~H~~~V~~~~~~~~~~~l~s~s~D~~v~vWd~~~~~~~   87 (313)
                      +...+.+++++++|+.+++.. ++.|.+||.+.... ..+. .....+..++++++|+++++...++.|.+|+..+....
T Consensus        65 ~~~~p~~i~~~~~g~l~v~~~-~~~i~~~d~~~~~~-~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~  142 (270)
T 1rwi_B           65 GLYQPQGLAVDGAGTVYVTDF-NNRVVTLAAGSNNQ-TVLPFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQT  142 (270)
T ss_dssp             SCCSCCCEEECTTCCEEEEET-TTEEEEECTTCSCC-EECCCCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSCE
T ss_pred             CcCCcceeEECCCCCEEEEcC-CCEEEEEeCCCceE-eeeecCCcCCCcceEECCCCCEEEEECCCCEEEEEECCCceeE
Confidence            335678999999999777666 88999999766543 2333 23357889999999998888777888998875432211


Q ss_pred             EEecCCCCeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEccCCCEEEEeeCC
Q 021399           88 FTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGED  167 (313)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~t~~~d  167 (313)
                      ..                                                    ..........++++++++.+++...+
T Consensus       143 ~~----------------------------------------------------~~~~~~~p~~i~~~~~g~l~v~~~~~  170 (270)
T 1rwi_B          143 VL----------------------------------------------------PFTGLNDPDGVAVDNSGNVYVTDTDN  170 (270)
T ss_dssp             EC----------------------------------------------------CCCSCCSCCCEEECTTCCEEEEEGGG
T ss_pred             ee----------------------------------------------------ccccCCCceeEEEeCCCCEEEEECCC
Confidence            00                                                    00011233456778888877777778


Q ss_pred             CeEEEEECCCCceeeecccccCceeceEEEEECCCCCEEEEeeCCCcEEEEECCCCcEEEEEec-CCceeEEEeccCCCE
Q 021399          168 AIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVT-ERPVNAVTMSPLLDH  246 (313)
Q Consensus       168 ~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~-~~~~~~~~~~p~~~~  246 (313)
                      +.|.+||...........   .+...+..++++++|..+++...++.|.+||............ ...+..++++|++. 
T Consensus       171 ~~i~~~~~~~~~~~~~~~---~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~-  246 (270)
T 1rwi_B          171 NRVVKLEAESNNQVVLPF---TDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTSTVLPFTGLNTPLAVAVDSDRT-  246 (270)
T ss_dssp             TEEEEECTTTCCEEECCC---SSCCSEEEEEECTTCCEEEEETTTSCEEEECTTCSCCEECCCCSCSCEEEEEECTTCC-
T ss_pred             CEEEEEecCCCceEeecc---cCCCCceEEEECCCCCEEEEECCCCcEEEEcCCCCcceeeccCCCCCceeEEECCCCC-
Confidence            899999987655432211   2235688999999998778777789999999977554332212 24578899999886 


Q ss_pred             EEEcc
Q 021399          247 VVLGG  251 (313)
Q Consensus       247 ~~~~~  251 (313)
                      ++++.
T Consensus       247 l~v~~  251 (270)
T 1rwi_B          247 VYVAD  251 (270)
T ss_dssp             EEEEE
T ss_pred             EEEEE
Confidence            55543

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=99.34  E-value=5.2e-10  Score=93.81  Aligned_cols=237  Identities=10%  Similarity=0.084  Sum_probs=145.6

Q ss_pred             cccccccccceeEEEEccCCC-EEEEeeCCCCeEEEeCCCCcEEEEecCCCCceEEEEECCCCCeEEEeeCCCcEEEEEC
Q 021399            3 PILMKGHERPLTYLKYNKDGD-LLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNV   81 (313)
Q Consensus         3 ~~~l~~h~~~v~~~~fs~~g~-~l~s~s~d~~i~iw~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~v~vWd~   81 (313)
                      +..|..+........|+|+|+ ++++...++.|..|+. +++ ...+..+...+..++++++|+++++...++.|.+|+.
T Consensus        37 ~~~l~~~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~-~g~-~~~~~~~~~~~~gl~~d~dG~l~v~~~~~~~v~~~~~  114 (305)
T 3dr2_A           37 LLTLYDQATWSEGPAWWEAQRTLVWSDLVGRRVLGWRE-DGT-VDVLLDATAFTNGNAVDAQQRLVHCEHGRRAITRSDA  114 (305)
T ss_dssp             CEEEECCCSSEEEEEEEGGGTEEEEEETTTTEEEEEET-TSC-EEEEEESCSCEEEEEECTTSCEEEEETTTTEEEEECT
T ss_pred             eEEEecCCcCccCCeEeCCCCEEEEEECCCCEEEEEeC-CCC-EEEEeCCCCccceeeECCCCCEEEEECCCCEEEEECC
Confidence            345555666678899999998 6677777899999987 454 3456666778899999999987766556688999998


Q ss_pred             CCCeEEEEec-C----CCCeeEEEeecCCeEEEEECC-Cceec---------cccceeeeeeeCCCCCCCceEEEecCCC
Q 021399           82 ETGAQLFTFN-F----DSPARSVDFAVGDKLAVITTD-PFMEL---------NSAIHVKRIARDPADQGGESVLILKGPQ  146 (313)
Q Consensus        82 ~~~~~~~~~~-~----~~~~~~~~~~~~~~~~~~~~~-~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~  146 (313)
                      + ++...... .    ...+..+.+.+++.+.+.... .....         .....++.+  ++.  .+......  ..
T Consensus       115 ~-g~~~~~~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~--d~~--~g~~~~~~--~~  187 (305)
T 3dr2_A          115 D-GQAHLLVGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRL--PPD--GSPLQRMA--DL  187 (305)
T ss_dssp             T-SCEEEEECEETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEE--CSS--SCCCEEEE--EE
T ss_pred             C-CCEEEEEeccCCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEE--cCC--CCcEEEEe--cC
Confidence            6 54332221 1    122345666776665543110 00000         000112221  111  11111111  22


Q ss_pred             CceEEEEEccCCCEEEEeeCC------CeEEEEECCCCceeeecc-cccCceeceEEEEECCCCCEEEEeeCCCcEEEEE
Q 021399          147 GRINRAVWGPLNRTIISAGED------AIVRIWDTETGKLLKESD-KETGHKKTITSLAKAADGSHFLTGSLDKSAKLWD  219 (313)
Q Consensus       147 ~~i~~~~~~~~~~~i~t~~~d------~~i~lwd~~~~~~~~~~~-~~~~h~~~v~~~~~s~~~~~l~s~s~dg~i~iwd  219 (313)
                      ...+.++|+|+++.+..+...      +.|.+||+..+. +.... ...........++++++|+..++ ..+ .|.+||
T Consensus       188 ~~p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~-l~~~~~~~~~~~~~pdgi~~d~~G~lwv~-~~~-gv~~~~  264 (305)
T 3dr2_A          188 DHPNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGA-LHDRRHFASVPDGLPDGFCVDRGGWLWSS-SGT-GVCVFD  264 (305)
T ss_dssp             SSEEEEEECTTSSEEEEEECCC---CCCEEEEEEEETTE-EEEEEEEECCSSSCCCSEEECTTSCEEEC-CSS-EEEEEC
T ss_pred             CCCcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCC-ccCCeEEEECCCCCCCeEEECCCCCEEEe-cCC-cEEEEC
Confidence            345778999999977766654      789999986543 21110 00111233456889999995444 444 499999


Q ss_pred             CCCCcEEEEEecCCceeEEEeccCCCEEEEccc
Q 021399          220 ARTLELIKTYVTERPVNAVTMSPLLDHVVLGGG  252 (313)
Q Consensus       220 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~  252 (313)
                      . .++.+..+..+..+..++|.|+++.++++..
T Consensus       265 ~-~g~~~~~~~~~~~~~~~~f~~d~~~L~it~~  296 (305)
T 3dr2_A          265 S-DGQLLGHIPTPGTASNCTFDQAQQRLFITGG  296 (305)
T ss_dssp             T-TSCEEEEEECSSCCCEEEECTTSCEEEEEET
T ss_pred             C-CCCEEEEEECCCceeEEEEeCCCCEEEEEcC
Confidence            8 4777777765556888999998888887653

>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*

Probab=99.34  E-value=5.1e-11  Score=102.49  Aligned_cols=144  Identities=8%  Similarity=-0.005  Sum_probs=111.8

Q ss_pred             cccccccccceeEEEEccCCCEEEEeeCCCCeEEEeCCCCcEEEEecCCCCceEEEEECCCCCeEEEeeCCCcEEEEECC
Q 021399            3 PILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVE   82 (313)
Q Consensus         3 ~~~l~~h~~~v~~~~fs~~g~~l~s~s~d~~i~iw~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~v~vWd~~   82 (313)
                      |+.+..+.+ |+.++|  |+++|+.+ .++.|++||+.+......+..|+..|.++.+.+.+  +++++.||.+.+||+.
T Consensus        81 ~~~~~~lp~-V~~l~f--d~~~L~v~-~~~~l~v~dv~sl~~~~~~~~~~~~v~~i~~~~p~--~av~~~dG~L~v~dl~  154 (388)
T 1xip_A           81 FKWEKEIPD-VIFVCF--HGDQVLVS-TRNALYSLDLEELSEFRTVTSFEKPVFQLKNVNNT--LVILNSVNDLSALDLR  154 (388)
T ss_dssp             CSEEEECTT-EEEEEE--ETTEEEEE-ESSEEEEEESSSTTCEEEEEECSSCEEEEEECSSE--EEEEETTSEEEEEETT
T ss_pred             ceEEeeCCC-eeEEEE--CCCEEEEE-cCCcEEEEEchhhhccCccceeecceeeEEecCCC--EEEEECCCCEEEEEcc
Confidence            444455677 999999  89999998 88999999998877777778888899888776543  8889999999999998


Q ss_pred             CCeEEEEecCCCCeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEccCCCEEE
Q 021399           83 TGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTII  162 (313)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~  162 (313)
                      ++....                                                        +...|.+++|+|.|  ++
T Consensus       155 ~~~~~~--------------------------------------------------------~~~~Vs~v~WSpkG--~~  176 (388)
T 1xip_A          155 TKSTKQ--------------------------------------------------------LAQNVTSFDVTNSQ--LA  176 (388)
T ss_dssp             TCCEEE--------------------------------------------------------EEESEEEEEECSSE--EE
T ss_pred             CCcccc--------------------------------------------------------ccCCceEEEEcCCc--eE
Confidence            764321                                                        01257789999998  67


Q ss_pred             EeeCCCeEEEEECCCCce--eeecc------cccCceeceEEEEECCCCCEEEEee
Q 021399          163 SAGEDAIVRIWDTETGKL--LKESD------KETGHKKTITSLAKAADGSHFLTGS  210 (313)
Q Consensus       163 t~~~d~~i~lwd~~~~~~--~~~~~------~~~~h~~~v~~~~~s~~~~~l~s~s  210 (313)
                      .|..||.+++|+...+..  .+++.      ...+|...|.++.|.+++.++++-.
T Consensus       177 vg~~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~y~  232 (388)
T 1xip_A          177 VLLKDRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAVFG  232 (388)
T ss_dssp             EEETTSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEEEE
T ss_pred             EEEcCCcEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCCeEEEEEc
Confidence            788999999998876553  33331      1124678899999999999988743

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=99.31  E-value=1.1e-09  Score=102.54  Aligned_cols=202  Identities=11%  Similarity=0.040  Sum_probs=126.5

Q ss_pred             eeEEEEccCCCEEEEeeCCCC----------------eEEEeCCCCc----EEEEecCCCCceEEEEECCCCCeEEEeeC
Q 021399           13 LTYLKYNKDGDLLFSCAKDHT----------------PTVWFADNGE----RLGTYRGHNGAVWCCDVSRDSMTLITGSA   72 (313)
Q Consensus        13 v~~~~fs~~g~~l~s~s~d~~----------------i~iw~~~~~~----~~~~~~~H~~~V~~~~~~~~~~~l~s~s~   72 (313)
                      +..++|+|||+.|+.++.++.                |++|++.++.    .+.....|...+..++|+|||+.++..+.
T Consensus       173 ~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~  252 (710)
T 2xdw_A          173 FSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIR  252 (710)
T ss_dssp             SCCEEECTTSSEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEE
T ss_pred             cceEEEEeCCCEEEEEEECCccccccccccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCCEEEEEEE
Confidence            567999999999999998876                9999998875    33333446667889999999998877654


Q ss_pred             -----CCcEEEEECCC------Ce--EEEEecCCCCeeEEEeec-CCeEEEEECCCceeccccceeeeeeeCCCCCCCce
Q 021399           73 -----DQTAKLWNVET------GA--QLFTFNFDSPARSVDFAV-GDKLAVITTDPFMELNSAIHVKRIARDPADQGGES  138 (313)
Q Consensus        73 -----D~~v~vWd~~~------~~--~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  138 (313)
                           +..|.+||+.+      +.  ............. .+.+ ++.+.+......    ....+..+.  ........
T Consensus       253 ~~~~~~~~l~~~d~~~~~~~~~~~~~~~~l~~~~~~~~~-~~s~dg~~l~~~s~~~~----~~~~l~~~d--~~~~~~~~  325 (710)
T 2xdw_A          253 EGCDPVNRLWYCDLQQESNGITGILKWVKLIDNFEGEYD-YVTNEGTVFTFKTNRHS----PNYRLINID--FTDPEESK  325 (710)
T ss_dssp             CSSSSCCEEEEEEGGGSSSSSCSSCCCEEEECSSSSCEE-EEEEETTEEEEEECTTC----TTCEEEEEE--TTSCCGGG
T ss_pred             ccCCCccEEEEEECcccccccCCccceEEeeCCCCcEEE-EEeccCCEEEEEECCCC----CCCEEEEEe--CCCCCccc
Confidence                 57899999976      42  2222222222222 3454 445544433210    011111111  11111001


Q ss_pred             EEEecCCCC--ceEEEEEccCCCEEEEeeCCCe--EEEEECCCCceeeecccccCceeceEEEEECCCCCEEEEe----e
Q 021399          139 VLILKGPQG--RINRAVWGPLNRTIISAGEDAI--VRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTG----S  210 (313)
Q Consensus       139 ~~~~~~~~~--~i~~~~~~~~~~~i~t~~~d~~--i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~----s  210 (313)
                      ...+..+..  .+..+.|++.+..+++...++.  |.+||+.+++.+..+.   .+...+..++++|+++.++..    .
T Consensus       326 ~~~l~~~~~~~~~~~~~~~~~~~lv~~~~~~g~~~l~~~~~~~g~~~~~l~---~~~~~v~~~~~s~d~~~l~~~~ss~~  402 (710)
T 2xdw_A          326 WKVLVPEHEKDVLEWVACVRSNFLVLCYLHDVKNTLQLHDLATGALLKIFP---LEVGSVVGYSGQKKDTEIFYQFTSFL  402 (710)
T ss_dssp             CEEEECCCSSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTTCCEEEEEC---CCSSEEEEEECCTTCSEEEEEEECSS
T ss_pred             ceeccCCCCCCeEEEEEEEcCCEEEEEEEECCEEEEEEEECCCCCEEEecC---CCCceEEEEecCCCCCEEEEEEeCCC
Confidence            122223322  5777888877778888888874  6667876776655543   346678889999999876633    2


Q ss_pred             CCCcEEEEECCCCc
Q 021399          211 LDKSAKLWDARTLE  224 (313)
Q Consensus       211 ~dg~i~iwd~~~~~  224 (313)
                      ..+++..||+++++
T Consensus       403 ~P~~i~~~d~~tg~  416 (710)
T 2xdw_A          403 SPGIIYHCDLTKEE  416 (710)
T ss_dssp             CCCEEEEEETTSSS
T ss_pred             CCCEEEEEECCCCc
Confidence            35789999998876

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=99.29  E-value=7.5e-08  Score=79.71  Aligned_cols=220  Identities=10%  Similarity=0.006  Sum_probs=141.2

Q ss_pred             cccceeEEEEccCCCEEEEeeCCCCeEEEeCCCCcE-EEEecCCCCceEEEEECCCCCeEEEeeCCCcEEEEECCCCeEE
Q 021399            9 HERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGER-LGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQL   87 (313)
Q Consensus         9 h~~~v~~~~fs~~g~~l~s~s~d~~i~iw~~~~~~~-~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~v~vWd~~~~~~~   87 (313)
                      +...+.+++++++|..+++...++.|..|+.+ ++. ...+......+.++++.++++++++...++.|.+||. +++..
T Consensus        55 ~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~  132 (299)
T 2z2n_A           55 PDAKVMCLTISSDGEVWFTENAANKIGRITKK-GIIKEYTLPNPDSAPYGITEGPNGDIWFTEMNGNRIGRITD-DGKIR  132 (299)
T ss_dssp             TTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEE
T ss_pred             ccCceeeEEECCCCCEEEeCCCCCeEEEECCC-CcEEEEeCCCcCCCceeeEECCCCCEEEEecCCceEEEECC-CCCEE
Confidence            34568899999999988887778889999876 332 2222234567899999999988888777889999998 55443


Q ss_pred             EEe-c-CCCCeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceE-EEecCCCCceEEEEEccCCCEEEEe
Q 021399           88 FTF-N-FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESV-LILKGPQGRINRAVWGPLNRTIISA  164 (313)
Q Consensus        88 ~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~i~~~~~~~~~~~i~t~  164 (313)
                      ... . ....+..+.+.+++.+.+.....     .  .+..+  +.   .+... .........+..+++.++++.+++.
T Consensus       133 ~~~~~~~~~~~~~i~~~~~g~l~v~~~~~-----~--~i~~~--~~---~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~  200 (299)
T 2z2n_A          133 EYELPNKGSYPSFITLGSDNALWFTENQN-----N--AIGRI--TE---SGDITEFKIPTPASGPVGITKGNDDALWFVE  200 (299)
T ss_dssp             EEECSSTTCCEEEEEECTTSCEEEEETTT-----T--EEEEE--CT---TCCEEEEECSSTTCCEEEEEECTTSSEEEEE
T ss_pred             EecCCCCCCCCceEEEcCCCCEEEEeCCC-----C--EEEEE--cC---CCcEEEeeCCCCCCcceeEEECCCCCEEEEc
Confidence            222 1 12345666677666665544321     0  01111  11   11111 1122334567788999999877776


Q ss_pred             eCCCeEEEEECCCCceeeecccccCceeceEEEEECCCCCEEEEeeCCCcEEEEECCCCcEEEEEec---CCceeEEEec
Q 021399          165 GEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVT---ERPVNAVTMS  241 (313)
Q Consensus       165 ~~d~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~---~~~~~~~~~~  241 (313)
                      ..++.|.+||. +++.. .+. ...+...+.+++++++|...++...++.|..||. +++ +..+..   ...+.++++ 
T Consensus       201 ~~~~~i~~~~~-~g~~~-~~~-~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~-~~~~~~~~~~~~~~~i~~-  274 (299)
T 2z2n_A          201 IIGNKIGRITT-SGEIT-EFK-IPTPNARPHAITAGAGIDLWFTEWGANKIGRLTS-NNI-IEEYPIQIKSAEPHGICF-  274 (299)
T ss_dssp             TTTTEEEEECT-TCCEE-EEE-CSSTTCCEEEEEECSTTCEEEEETTTTEEEEEET-TTE-EEEEECSSSSCCEEEEEE-
T ss_pred             cCCceEEEECC-CCcEE-EEE-CCCCCCCceeEEECCCCCEEEeccCCceEEEECC-CCc-eEEEeCCCCCCccceEEe-
Confidence            67889999998 55532 221 1224467889999999997777667889999998 443 334422   235677888 


Q ss_pred             cCCCEEE
Q 021399          242 PLLDHVV  248 (313)
Q Consensus       242 p~~~~~~  248 (313)
                      +.+...+
T Consensus       275 ~~g~l~v  281 (299)
T 2z2n_A          275 DGETIWF  281 (299)
T ss_dssp             CSSCEEE
T ss_pred             cCCCEEE
Confidence            6655333

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=99.28  E-value=2.3e-09  Score=91.90  Aligned_cols=271  Identities=13%  Similarity=0.061  Sum_probs=158.7

Q ss_pred             EEEccCCCEEEEeeC-----CCCeEEEeCCCCcEEEEecCCCCceEEEEECCCCCeEEEee----------CCCcEEEEE
Q 021399           16 LKYNKDGDLLFSCAK-----DHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGS----------ADQTAKLWN   80 (313)
Q Consensus        16 ~~fs~~g~~l~s~s~-----d~~i~iw~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s----------~D~~v~vWd   80 (313)
                      ....|+++.++....     ++.|.+.|..+.+.+.++..-..+ . ++++|||+.++.++          .+++|.+||
T Consensus        38 ~~~~pd~~~vyV~~~~~~~~~~~V~ViD~~t~~v~~~I~vG~~P-~-va~spDG~~lyVan~~~~r~~~G~~~~~VsviD  115 (386)
T 3sjl_D           38 EAPAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFLP-N-PVVADDGSFIAHASTVFSRIARGERTDYVEVFD  115 (386)
T ss_dssp             CCCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEECSSC-E-EEECTTSSCEEEEEEEEEETTEEEEEEEEEEEC
T ss_pred             eccCCCCCEEEEEcCcccCCCCEEEEEECCCCeEEEEEECCCCC-c-EEECCCCCEEEEEcccccccccCCCCCEEEEEE
Confidence            456799999888876     678999999999999988765555 4 99999999887765          367899999


Q ss_pred             CCCCeEEEEecCC--------CCeeEEEeecCCeEEEEECC-CceeccccceeeeeeeCCCCCCCceEEEecCCCCceEE
Q 021399           81 VETGAQLFTFNFD--------SPARSVDFAVGDKLAVITTD-PFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINR  151 (313)
Q Consensus        81 ~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~  151 (313)
                      ..+.+.+..+...        .....+.++++++.+++... ..    ..+.+.+.      ...+.+..+.-..  . .
T Consensus       116 ~~t~~v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~----~~VsVID~------~t~~vv~tI~v~g--~-~  182 (386)
T 3sjl_D          116 PVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPA----PAVGVVDL------EGKAFKRMLDVPD--C-Y  182 (386)
T ss_dssp             TTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSS----CEEEEEET------TTTEEEEEEECCS--E-E
T ss_pred             CCCCeEEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCC----CeEEEEEC------CCCcEEEEEECCC--c-c
Confidence            9999887766432        24556788888776665431 10    11111111      1122222222111  0 1


Q ss_pred             EEEccCCCEEEEeeCCCeEEEEECCC-Cceeeeccc-ccCceece-EEEEE-CCCCCEEEEeeCCCcEEEEECCCCc--E
Q 021399          152 AVWGPLNRTIISAGEDAIVRIWDTET-GKLLKESDK-ETGHKKTI-TSLAK-AADGSHFLTGSLDKSAKLWDARTLE--L  225 (313)
Q Consensus       152 ~~~~~~~~~i~t~~~d~~i~lwd~~~-~~~~~~~~~-~~~h~~~v-~~~~~-s~~~~~l~s~s~dg~i~iwd~~~~~--~  225 (313)
                      ..+....+.+++.+.||++.+.++.. ++....... .......+ ....| .++|..+. .+.+|++.+.|+.+..  .
T Consensus       183 ~~~P~g~~~~~~~~~DG~~~~v~~~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~dG~~~~-vs~~g~V~v~d~~~~~~~v  261 (386)
T 3sjl_D          183 HIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVW-PTYTGKIHQIDLSSGDAKF  261 (386)
T ss_dssp             EEEEEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTTEEEE-EBTTSEEEEEECTTSSCEE
T ss_pred             eeecCCCceeEEECCCCCEEEEECCCCCeEEEeecceeccccccccccceeEcCCCcEEE-EeCCCEEEEEECCCCccee
Confidence            12222345677778899998888875 443221110 00001111 11244 46776544 5558999999997654  3


Q ss_pred             EEEEe-----------cCCceeEEEeccCCCEEEEcccccCceeEeeccCCCceeeeeeehhhhhhhccccccccceeEE
Q 021399          226 IKTYV-----------TERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINAL  294 (313)
Q Consensus       226 ~~~~~-----------~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~  294 (313)
                      +..+.           .+.....++++|+++.++++-..+.    -+.++....++..+|..+.+.+..+. -..+++.|
T Consensus       262 ~~~~~~~~~~~~~~g~~p~g~q~~a~~~~~~~lyV~~~~~~----~~~hk~~~~~V~viD~~t~kv~~~i~-vg~~~~~l  336 (386)
T 3sjl_D          262 LPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRD----EWRHKTASRFVVVLDAKTGERLAKFE-MGHEIDSI  336 (386)
T ss_dssp             CCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECC----TTCTTSCEEEEEEEETTTCCEEEEEE-EEEEECEE
T ss_pred             ecceeccccccccccccCCCcceeeECCCCCeEEEEecccc----ccccCCCCCEEEEEECCCCeEEEEEE-CCCCcceE
Confidence            33222           0112345777888888877632111    01111222345556666655555443 13478999


Q ss_pred             EECCCCCeeEEEE
Q 021399          295 AFNPDGKRYGFLL  307 (313)
Q Consensus       295 ~fspdgk~~~~~~  307 (313)
                      +|+||||..-|..
T Consensus       337 avs~D~~~~ly~t  349 (386)
T 3sjl_D          337 NVSQDEKPLLYAL  349 (386)
T ss_dssp             EECSSSSCEEEEE
T ss_pred             EECCCCCeEEEEE
Confidence            9999998555543

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=99.27  E-value=1.1e-08  Score=86.63  Aligned_cols=228  Identities=13%  Similarity=0.027  Sum_probs=141.7

Q ss_pred             ceeEEEEccCCC-EEEEeeCCCCeEEEeCCCCcEEEEecCCCCceEEEEECCCCCeEEEeeCCCcEEEEECCCCeEEEEe
Q 021399           12 PLTYLKYNKDGD-LLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTF   90 (313)
Q Consensus        12 ~v~~~~fs~~g~-~l~s~s~d~~i~iw~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~v~vWd~~~~~~~~~~   90 (313)
                      ...+..|+|++. .+++...++.|..||.++++.. .+. +...+.+++++++|+++++. .+ .|.+||+.+++.....
T Consensus        50 ~~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~-~~~-~~~~v~~i~~~~dg~l~v~~-~~-gl~~~d~~~g~~~~~~  125 (326)
T 2ghs_A           50 LGEGPTFDPASGTAWWFNILERELHELHLASGRKT-VHA-LPFMGSALAKISDSKQLIAS-DD-GLFLRDTATGVLTLHA  125 (326)
T ss_dssp             BEEEEEEETTTTEEEEEEGGGTEEEEEETTTTEEE-EEE-CSSCEEEEEEEETTEEEEEE-TT-EEEEEETTTCCEEEEE
T ss_pred             CCcCCeEeCCCCEEEEEECCCCEEEEEECCCCcEE-EEE-CCCcceEEEEeCCCeEEEEE-CC-CEEEEECCCCcEEEEe
Confidence            346789999754 5666667889999998877643 332 34679999999999877754 44 4999999887754433


Q ss_pred             cCC-----CCeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEccCCCEEEE-e
Q 021399           91 NFD-----SPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIIS-A  164 (313)
Q Consensus        91 ~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~t-~  164 (313)
                      ...     .....+.+.+++.+.+...... .......++.+.      .+.. ..+..+....+.++|+|+++.+.. .
T Consensus       126 ~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~-~~~~~~~l~~~~------~g~~-~~~~~~~~~~~~i~~s~dg~~lyv~~  197 (326)
T 2ghs_A          126 ELESDLPGNRSNDGRMHPSGALWIGTMGRK-AETGAGSIYHVA------KGKV-TKLFADISIPNSICFSPDGTTGYFVD  197 (326)
T ss_dssp             CSSTTCTTEEEEEEEECTTSCEEEEEEETT-CCTTCEEEEEEE------TTEE-EEEEEEESSEEEEEECTTSCEEEEEE
T ss_pred             eCCCCCCCCCCCCEEECCCCCEEEEeCCCc-CCCCceEEEEEe------CCcE-EEeeCCCcccCCeEEcCCCCEEEEEE
Confidence            221     1245666777766655432100 000011222221      0111 111112234568899999986644 4


Q ss_pred             eCCCeEEEEECC--CC-cee--eecccccCceeceEEEEECCCCCEEEEeeCCCcEEEEECCCCcEEEEEecC-CceeEE
Q 021399          165 GEDAIVRIWDTE--TG-KLL--KESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTE-RPVNAV  238 (313)
Q Consensus       165 ~~d~~i~lwd~~--~~-~~~--~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~-~~~~~~  238 (313)
                      +.++.|.+||..  ++ ...  +.+............++++++|...++...++.|..||. +++.+..+..+ ..+.++
T Consensus       198 ~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lwva~~~~~~v~~~d~-~g~~~~~i~~~~~~~~~~  276 (326)
T 2ghs_A          198 TKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDT-DGNHIARYEVPGKQTTCP  276 (326)
T ss_dssp             TTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECT-TCCEEEEEECSCSBEEEE
T ss_pred             CCCCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCCEEEEEeCCCEEEEECC-CCCEEEEEECCCCCcEEE
Confidence            567899999975  54 311  111111122345678999999998777767789999998 56776666543 358899


Q ss_pred             Eec-cCCCEEEEccc
Q 021399          239 TMS-PLLDHVVLGGG  252 (313)
Q Consensus       239 ~~~-p~~~~~~~~~~  252 (313)
                      +|. |+++.++++..
T Consensus       277 af~g~d~~~L~vt~~  291 (326)
T 2ghs_A          277 AFIGPDASRLLVTSA  291 (326)
T ss_dssp             EEESTTSCEEEEEEB
T ss_pred             EEecCCCCEEEEEec
Confidence            998 88888876643

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=99.25  E-value=1.4e-09  Score=94.86  Aligned_cols=232  Identities=8%  Similarity=-0.012  Sum_probs=142.7

Q ss_pred             EEEEccCCCEEEEee----------CCCCeEEEeCCCCcEEEEecCC-------CCceEEEEECCCCCeEEEeeC--CCc
Q 021399           15 YLKYNKDGDLLFSCA----------KDHTPTVWFADNGERLGTYRGH-------NGAVWCCDVSRDSMTLITGSA--DQT   75 (313)
Q Consensus        15 ~~~fs~~g~~l~s~s----------~d~~i~iw~~~~~~~~~~~~~H-------~~~V~~~~~~~~~~~l~s~s~--D~~   75 (313)
                      .+.++|||++|+.+.          .++.|.++|..+.+.+.++.--       ...-..+.|+|||++++.+..  ++.
T Consensus       122 gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~~~~~  201 (426)
T 3c75_H          122 HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFLPIADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFSPAPA  201 (426)
T ss_dssp             EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECSSSCE
T ss_pred             ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCcEEEEEECCCccccccCCCcceEEEcCCCCEEEEEecCCCCe
Confidence            799999999988876          3678999999999988876421       112345789999998888764  588


Q ss_pred             EEEEECCCCeEEEEecCCCC--------eeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCC
Q 021399           76 AKLWNVETGAQLFTFNFDSP--------ARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQG  147 (313)
Q Consensus        76 v~vWd~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  147 (313)
                      |.+.|+.+.+.+..+.....        ...+.++++++++++... .....      .....          .+.-...
T Consensus       202 VsVID~~t~kvv~~I~v~g~~~~~p~g~~~~v~~~~dG~~~~V~~~-~~~v~------~~~~~----------~~~v~~~  264 (426)
T 3c75_H          202 VGVVDLEGKTFDRMLDVPDCYHIFPASPTVFYMNCRDGSLARVDFA-DGETK------VTNTE----------VFHTEDE  264 (426)
T ss_dssp             EEEEETTTTEEEEEEECCSEEEEEEEETTEEEEEETTSSEEEEECC-TTCCE------EEECC----------CCSCTTS
T ss_pred             EEEEECCCCeEEEEEEcCCceeeccCCCcEEEEEcCCCCEEEEECC-CCcEE------EEeee----------eeccCCC
Confidence            99999999988776654221        112334444444443321 00000      00000          0000001


Q ss_pred             ce-EEEEEccCCCEEEEeeCCCeEEEEECCCCcee--eeccc------ccC-ceeceEEEEECCCCCEEEEeeC------
Q 021399          148 RI-NRAVWGPLNRTIISAGEDAIVRIWDTETGKLL--KESDK------ETG-HKKTITSLAKAADGSHFLTGSL------  211 (313)
Q Consensus       148 ~i-~~~~~~~~~~~i~t~~~d~~i~lwd~~~~~~~--~~~~~------~~~-h~~~v~~~~~s~~~~~l~s~s~------  211 (313)
                      ++ ..+.+.+++..++.....+.+.+.|.......  ..+..      ..+ .......+++++++++++....      
T Consensus       265 p~~~~~~~~~dg~~~~~~s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~va~s~dg~rlyVa~~~~~~gt  344 (426)
T 3c75_H          265 LLINHPAFSLRSGRLVWPTYTGKIFQADLTAEGATFRAPIEALTEAERADDWRPGGWQQTAYHRQSDRIYLLVDQRDEWK  344 (426)
T ss_dssp             CBCSCCEECTTTCEEEEEBTTSEEEEEEECSSCEEECCCEESSCTTTGGGTEEECSSSCEEEEGGGTEEEEEEEECCTTC
T ss_pred             ceeeEeeecCCCCEEEEEeCCCcEEEEeccCCceEEeeeeeeccccccccccccCCceeeEEcCCCCEEEEEeccccccc
Confidence            11 12345777777766677889999998654321  11100      000 0111223678999887776642      


Q ss_pred             ----CCcEEEEECCCCcEEEEEecCCceeEEEeccCCC-EEEEcccccCceeEeeccC
Q 021399          212 ----DKSAKLWDARTLELIKTYVTERPVNAVTMSPLLD-HVVLGGGQDASAVTTTDHR  264 (313)
Q Consensus       212 ----dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~p~~~-~~~~~~~~~~~~~~~~~~~  264 (313)
                          ++.|.+.|+++.+.+.++........++|+|+++ .++++... .+.+.+.|..
T Consensus       345 hk~~s~~VsVID~~T~kvv~~I~vg~~P~gia~spDg~~~lyv~n~~-s~~VsVID~~  401 (426)
T 3c75_H          345 HKAASRFVVVLNAETGERINKIELGHEIDSINVSQDAEPLLYALSAG-TQTLHIYDAA  401 (426)
T ss_dssp             TTSCEEEEEEEETTTCCEEEEEEEEEEECEEEECCSSSCEEEEEETT-TTEEEEEETT
T ss_pred             ccCCCCEEEEEECCCCeEEEEEECCCCcCeEEEccCCCEEEEEEcCC-CCeEEEEECC
Confidence                3579999999999999997766789999999998 66665432 2334444433

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=99.24  E-value=3.3e-09  Score=90.46  Aligned_cols=232  Identities=12%  Similarity=0.144  Sum_probs=134.0

Q ss_pred             cceeEEEEccCCCEEEEee--CCCCeEEEeCCCCcEEEEe-------cCCCCceEEEEECCCCCeEEEeeC-----CCcE
Q 021399           11 RPLTYLKYNKDGDLLFSCA--KDHTPTVWFADNGERLGTY-------RGHNGAVWCCDVSRDSMTLITGSA-----DQTA   76 (313)
Q Consensus        11 ~~v~~~~fs~~g~~l~s~s--~d~~i~iw~~~~~~~~~~~-------~~H~~~V~~~~~~~~~~~l~s~s~-----D~~v   76 (313)
                      ..+..++++|+|+.+++..  .++.++||.+.+++.. .+       .+|-..+..++++++++++++-..     ++.|
T Consensus        17 ~~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~~g~~~-~~p~~~~~~~~~~~~p~gv~~d~~g~L~v~D~g~~~~~~~~i   95 (343)
T 2qe8_A           17 LAPGNITLTPDGRLFLSLHQFYQPEMQVAELTQDGLI-PFPPQSGNAIITFDTVLGIKSDGNGIVWMLDNGNQSKSVPKL   95 (343)
T ss_dssp             SCEEEEEECTTSCEEEEECGGGCCSCSEEEEETTEEE-ESCCCCSSCCCCCSCEEEEEECSSSEEEEEECHHHHTSCCEE
T ss_pred             CCcceEEECCCCCEEEEeCCCCCCceEEEEECCCCee-cCCCcccCcccceeEeeEEEEcCCCcEEEEcCCCCcCCCCeE
Confidence            5688999999999999864  2344677766555432 22       235568999999999886665433     5789


Q ss_pred             EEEECCCCeEEEEecCCCCeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEcc
Q 021399           77 KLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGP  156 (313)
Q Consensus        77 ~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~  156 (313)
                      .+||+.+++.+..+......                                              ..+....+.+++++
T Consensus        96 ~~~d~~tg~~~~~~~~~~~~----------------------------------------------~~~~~~~~~v~vd~  129 (343)
T 2qe8_A           96 VAWDTLNNQLSRVIYLPPPI----------------------------------------------TLSNSFVNDLAVDL  129 (343)
T ss_dssp             EEEETTTTEEEEEEECCTTT----------------------------------------------SCTTCCCCEEEEET
T ss_pred             EEEECCCCeEEEEEECChhh----------------------------------------------cccccccceEEEec
Confidence            99999888755433211000                                              00112334566665


Q ss_pred             CC-CEEEEee---CCCeEEEEECCCCceeeecccc------------cCc--------------eeceEEEEECCCCCEE
Q 021399          157 LN-RTIISAG---EDAIVRIWDTETGKLLKESDKE------------TGH--------------KKTITSLAKAADGSHF  206 (313)
Q Consensus       157 ~~-~~i~t~~---~d~~i~lwd~~~~~~~~~~~~~------------~~h--------------~~~v~~~~~s~~~~~l  206 (313)
                      .+ ..+++-.   .++.|.+||+.+++..+.....            .+.              ...+..++++|+|+.|
T Consensus       130 ~~g~~yvtd~~~~~~~~i~v~d~~~g~~~r~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~~l  209 (343)
T 2qe8_A          130 IHNFVYISDPAPDDKAALIRVDLQTGLAARVLQGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDAENEWL  209 (343)
T ss_dssp             TTTEEEEEECCSGGGCEEEEEETTTCCEEEECTTCTTTSCCSCCCEETTEECBEECTTSCEECCCCCEEEEEECTTSCEE
T ss_pred             CCCEEEEEcCccCCCCeEEEEECCCCCEEEEecCCCcccccccceeECCEEEEeccCCCceeceecccceeEeccCCCEE
Confidence            43 3345544   5788999998877655433210            000              1235789999999988


Q ss_pred             EEeeCCCcEEEEECCC-----Cc--------EEEEEecCCceeEEEeccCCCEEEEcccccCceeEeeccCCCceeeeee
Q 021399          207 LTGSLDKSAKLWDART-----LE--------LIKTYVTERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFF  273 (313)
Q Consensus       207 ~s~s~dg~i~iwd~~~-----~~--------~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  273 (313)
                      +.+..++. ++|.+.+     +.        .+...........+++++++. ++++.. ....+..+|...+++.... 
T Consensus       210 y~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~pdgia~d~~G~-l~va~~-~~~~V~~~d~~~G~~~~~~-  285 (343)
T 2qe8_A          210 YLSPMHST-SMYRIKSADLSNLQLTDAELGSKIERYSEKPICDGISIDKDHN-IYVGDL-AHSAIGVITSADRAYKLLV-  285 (343)
T ss_dssp             EEEESSCS-EEEEEEHHHHTCTTCCHHHHHTTCEEEEECCSCSCEEECTTCC-EEEEEG-GGTEEEEEETTTTEEEEEE-
T ss_pred             EEEeCCCC-eEEEEEHHHhcCCCCChhhhhcceEecccCCCCceEEECCCCC-EEEEcc-CCCeEEEEECCCCCEEEEE-
Confidence            88877664 4554321     10        011111122456788888865 444432 2334555554223221111 


Q ss_pred             ehhhhhhhccccccccceeEEEECCCCCee
Q 021399          274 DKILQEEIGGVKGHFGPINALAFNPDGKRY  303 (313)
Q Consensus       274 ~~~~~~~~~~~~~h~~~V~~~~fspdgk~~  303 (313)
                      .         . .+.....+++|.|||+.+
T Consensus       286 ~---------~-~~~~~p~~va~~~~g~l~  305 (343)
T 2qe8_A          286 T---------D-EKLSWTDSFNFGSDGYLY  305 (343)
T ss_dssp             E---------C-GGGSCEEEEEECTTSCEE
T ss_pred             E---------C-CceecCCeeEECCCCcEE
Confidence            0         0 123467899999998753

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=99.24  E-value=1.7e-08  Score=88.16  Aligned_cols=223  Identities=11%  Similarity=0.041  Sum_probs=137.2

Q ss_pred             ccceeEEEEccCCCEEEEeeCCCCeEEEeCCCCcEEEEecCCCCceEEEEECCCCCeEEEeeCCC--cEEEEECCCCeEE
Q 021399           10 ERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQ--TAKLWNVETGAQL   87 (313)
Q Consensus        10 ~~~v~~~~fs~~g~~l~s~s~d~~i~iw~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~--~v~vWd~~~~~~~   87 (313)
                      ...+..++|+++|+++++...++.|++||.+++........... .. ++|+++++.++.+..++  .|.+|+..++...
T Consensus       130 ~~~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~~~~~~~~~~-~~-ia~~~~g~~l~~~d~~~~~~I~~~d~~~~~~~  207 (409)
T 3hrp_A          130 FKYMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKVTTVHPGFKG-GK-PAVTKDKQRVYSIGWEGTHTVYVYMKASGWAP  207 (409)
T ss_dssp             CCCEEEEEECSTTEEEEEETTTTEEEEEETTTTEEEEEEETCCB-CB-CEECTTSSEEEEEBSSTTCEEEEEEGGGTTCE
T ss_pred             cCCceEEEEeCCCCEEEEecCCCcEEEEECCCCEEEEeeccCCC-Cc-eeEecCCCcEEEEecCCCceEEEEEcCCCcee
Confidence            34678999999999888888889999999988876655544332 23 89999999888888766  7888887655432


Q ss_pred             EEe----c-CCCCeeEEEeec-CCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEE----ecCCCCce--EEEEEc
Q 021399           88 FTF----N-FDSPARSVDFAV-GDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLI----LKGPQGRI--NRAVWG  155 (313)
Q Consensus        88 ~~~----~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~i--~~~~~~  155 (313)
                      ...    . .......+.+.+ ++.+.+...+.        .+..+..  .  .......    ..++...-  ..++++
T Consensus       208 ~~~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~--------~I~~~d~--~--~~~~~~~~~~~~~g~~~~~P~~~ia~~  275 (409)
T 3hrp_A          208 TRIGQLGSTFSGKIGAVALDETEEWLYFVDSNK--------NFGRFNV--K--TQEVTLIKQLELSGSLGTNPGPYLIYY  275 (409)
T ss_dssp             EEEEECCTTSCSCCCBCEECTTSSEEEEECTTC--------EEEEEET--T--TCCEEEEEECCCCSCCCCSSCCEEEEE
T ss_pred             EEeeeccchhcCCcEEEEEeCCCCeEEEEECCC--------cEEEEEC--C--CCCEEEEecccccCCCCCCccccEEEe
Confidence            222    2 223445667777 44444422111        1111110  0  0111111    11222212  288999


Q ss_pred             cC-CCEEEEeeCCCeEEEEECCCCceeeeccccc---C---------ceeceEEEEECCCCCEEEEee-CCCcEEEEECC
Q 021399          156 PL-NRTIISAGEDAIVRIWDTETGKLLKESDKET---G---------HKKTITSLAKAADGSHFLTGS-LDKSAKLWDAR  221 (313)
Q Consensus       156 ~~-~~~i~t~~~d~~i~lwd~~~~~~~~~~~~~~---~---------h~~~v~~~~~s~~~~~l~s~s-~dg~i~iwd~~  221 (313)
                      |+ +..+++-..++.|+.|+....  +..+....   +         .-.....++++++|+.+++-+ .++.|+.||+.
T Consensus       276 p~~g~lyv~d~~~~~I~~~~~~g~--~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~I~~~~~~  353 (409)
T 3hrp_A          276 FVDSNFYMSDQNLSSVYKITPDGE--CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYCLRKLDIL  353 (409)
T ss_dssp             TTTTEEEEEETTTTEEEEECTTCC--EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCEEEEEETT
T ss_pred             CCCCEEEEEeCCCCEEEEEecCCC--EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCEEEEEECC
Confidence            95 666666677889999997643  22221100   1         013478899999999888887 88999999987


Q ss_pred             CCcEEEEEecC----------------CceeEEEeccCCCEEEEc
Q 021399          222 TLELIKTYVTE----------------RPVNAVTMSPLLDHVVLG  250 (313)
Q Consensus       222 ~~~~~~~~~~~----------------~~~~~~~~~p~~~~~~~~  250 (313)
                      +++. .++...                .....++++|+ ..++++
T Consensus       354 ~G~v-~~~~g~~~~~g~~~g~~~~~~~~~P~giavd~~-g~lyVa  396 (409)
T 3hrp_A          354 DGYV-STVAGQVDVASQIDGTPLEATFNYPYDICYDGE-GGYWIA  396 (409)
T ss_dssp             TTEE-EEEEECTTCBSCCCBSTTTCCBSSEEEEEECSS-SEEEEE
T ss_pred             CCEE-EEEeCCCCCCCcCCCChhceEeCCceEEEEcCC-CCEEEE
Confidence            7764 333221                23567788877 445554

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=99.23  E-value=2.5e-12  Score=111.10  Aligned_cols=206  Identities=14%  Similarity=0.119  Sum_probs=108.4

Q ss_pred             CCCEEEEeeCCCCeEEEeCCCCcEEEEecCCCCceEEEEECCCCCeEEEeeCCCcEEEEECCCCeEEEEecCCCCeeEEE
Q 021399           21 DGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVD  100 (313)
Q Consensus        21 ~g~~l~s~s~d~~i~iw~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~v~vWd~~~~~~~~~~~~~~~~~~~~  100 (313)
                      ++.++++++.|+.|+.||.++|+.+.+++.  +.+.+..+..+++.+++++.|+.++.||..+++.++......+.    
T Consensus         8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~--~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~~----   81 (369)
T 2hz6_A            8 PETLLFVSTLDGSLHAVSKRTGSIKWTLKE--DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEGLTKLPFTIPE----   81 (369)
T ss_dssp             CTTEEEEEETTSEEEEEETTTCCEEEEEEC--CCSCCCC-----CCEEECTTTCCEEEC-----CCSEECSCCHHH----
T ss_pred             eCCEEEEEcCCCEEEEEECCCCCEEEEecC--CCceecceEcCCCEEEEeCCCCEEEEEECCCCceeeeeeccCcc----
Confidence            578999999999999999999999988887  55555555667778888899999999999887654433211000    


Q ss_pred             eecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEccCCCEEEEeeCCCeEEEEECCCCce
Q 021399          101 FAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKL  180 (313)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~t~~~d~~i~lwd~~~~~~  180 (313)
                                          ..                      ...++    +. .+..+++++.|+.|+.||.++++.
T Consensus        82 --------------------~~----------------------~~sp~----~~-~~~~v~~g~~dg~v~a~D~~tG~~  114 (369)
T 2hz6_A           82 --------------------LV----------------------QASPC----RS-SDGILYMGKKQDIWYVIDLLTGEK  114 (369)
T ss_dssp             --------------------HH----------------------TTCSC----C------CCCCEEEEEEEEECCC----
T ss_pred             --------------------cc----------------------ccCce----Ee-cCCEEEEEeCCCEEEEEECCCCcE
Confidence                                00                      00000    00 123466788899999999999987


Q ss_pred             eeecccccCceeceEEEEECCCCCEEEEeeCCCcEEEEECCCCcEEEEEecCCceeEEEeccCC---CEEEEcccccCce
Q 021399          181 LKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTERPVNAVTMSPLL---DHVVLGGGQDASA  257 (313)
Q Consensus       181 ~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~p~~---~~~~~~~~~~~~~  257 (313)
                      +-++..   +.    ...++|++..+++++.|+.|+.||.++++.+..+.... ....++.++.   +.++++.  ..+.
T Consensus       115 ~w~~~~---~~----~~~~~p~~~~v~~~~~dg~v~a~d~~tG~~~W~~~~~~-~~~~~~~~~~~~~~~v~~~~--~dg~  184 (369)
T 2hz6_A          115 QQTLSS---AF----ADSLSPSTSLLYLGRTEYTITMYDTKTRELRWNATYFD-YAASLPEDDVDYKMSHFVSN--GDGL  184 (369)
T ss_dssp             -------------------------EEEEEEEEEEECCCSSSSSCCCEEEEEE-ECCBCCCCCTTCCCCEEEEE--TSCE
T ss_pred             EEEecC---CC----cccccccCCEEEEEecCCEEEEEECCCCCEEEeEeccc-ccCccccCCccccceEEEEC--CCCE
Confidence            654431   11    13445688899999999999999999998765543211 1122222221   3444432  2344


Q ss_pred             eEeeccCCCceeeeeeehhhhhhhccccccccce-eEEEECCCCCe
Q 021399          258 VTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPI-NALAFNPDGKR  302 (313)
Q Consensus       258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V-~~~~fspdgk~  302 (313)
                      ++.+|.+.++..   |.         .. ..+++ ....+++||..
T Consensus       185 v~a~d~~tG~~~---W~---------~~-~~~pv~~~~~~~~dg~~  217 (369)
T 2hz6_A          185 VVTVDSESGDVL---WI---------QN-YASPVVAFYVWQREGLR  217 (369)
T ss_dssp             EEEECTTTCCEE---EE---------EE-CSSCEEEEEECTTSSCE
T ss_pred             EEEEECCCCcEE---EE---------ec-CCCceEEEEEecCCceE
Confidence            666666655432   22         11 23344 34567778764

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=99.20  E-value=2.7e-08  Score=80.92  Aligned_cols=188  Identities=11%  Similarity=0.035  Sum_probs=127.1

Q ss_pred             ceeEEEEccCCCEEEEeeC--CCCeEEEeCCCCcEEEEecCC-CCceEEEEECCCCCeEEEeeCCCcEEEEECCCCeEEE
Q 021399           12 PLTYLKYNKDGDLLFSCAK--DHTPTVWFADNGERLGTYRGH-NGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLF   88 (313)
Q Consensus        12 ~v~~~~fs~~g~~l~s~s~--d~~i~iw~~~~~~~~~~~~~H-~~~V~~~~~~~~~~~l~s~s~D~~v~vWd~~~~~~~~   88 (313)
                      ....+.|++|+.++++.+.  ++.|++.|.++++.+.++.-- ......+++. .+++.++.-.++.+.++|..+.+.+.
T Consensus        22 f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~-g~~lyv~t~~~~~v~viD~~t~~v~~  100 (266)
T 2iwa_A           22 FTQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLL-NEKLYQVVWLKNIGFIYDRRTLSNIK  100 (266)
T ss_dssp             CEEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEE-TTEEEEEETTCSEEEEEETTTTEEEE
T ss_pred             CcccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEe-CCEEEEEEecCCEEEEEECCCCcEEE
Confidence            4678999998765555543  589999999999998876521 1222345554 23455555678999999999887665


Q ss_pred             EecCCCCeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEccCCCEEEEeeCCC
Q 021399           89 TFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDA  168 (313)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~t~~~d~  168 (313)
                      .+....+                                                  .+    ..++++++.++.+..++
T Consensus       101 ~i~~g~~--------------------------------------------------~g----~glt~Dg~~l~vs~gs~  126 (266)
T 2iwa_A          101 NFTHQMK--------------------------------------------------DG----WGLATDGKILYGSDGTS  126 (266)
T ss_dssp             EEECCSS--------------------------------------------------SC----CEEEECSSSEEEECSSS
T ss_pred             EEECCCC--------------------------------------------------Ce----EEEEECCCEEEEECCCC
Confidence            4432100                                                  00    01233444455556788


Q ss_pred             eEEEEECCCCceeeecccccC-ce-eceEEEEECCCCCEEEEeeCCCcEEEEECCCCcEEEEEecC--------------
Q 021399          169 IVRIWDTETGKLLKESDKETG-HK-KTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTE--------------  232 (313)
Q Consensus       169 ~i~lwd~~~~~~~~~~~~~~~-h~-~~v~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~--------------  232 (313)
                      .|.++|..+.+.+..+..... .. ..++.+.+. +|...+....++.|.+.|+++++.+..+...              
T Consensus       127 ~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~-dg~lyvn~~~~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~  205 (266)
T 2iwa_A          127 ILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYI-NGEVWANIWQTDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDI  205 (266)
T ss_dssp             EEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTSSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTC
T ss_pred             eEEEEECCCCcEEEEEEECCCCcccccceeEEEE-CCEEEEecCCCCeEEEEECCCCcEEEEEECCCccccccccccccc
Confidence            999999999887766543211 11 136677777 7755555556889999999999999888642              


Q ss_pred             CceeEEEeccCCCEEEEcccccC
Q 021399          233 RPVNAVTMSPLLDHVVLGGGQDA  255 (313)
Q Consensus       233 ~~~~~~~~~p~~~~~~~~~~~~~  255 (313)
                      ...+.++++|+++.++++++...
T Consensus       206 ~v~nGIa~~~~~~~lfVTgk~~~  228 (266)
T 2iwa_A          206 DVLNGIAWDQENKRIFVTGKLWP  228 (266)
T ss_dssp             CCEEEEEEETTTTEEEEEETTCS
T ss_pred             CceEEEEEcCCCCEEEEECCCCC
Confidence            24589999999999999876554

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=99.18  E-value=9.7e-09  Score=85.98  Aligned_cols=203  Identities=9%  Similarity=0.027  Sum_probs=122.9

Q ss_pred             cccceeEEEEccC-CCEEEEeeCCCCeEEEeCCCCcEEEE-ecC----CCCceEEEEECCCCCeEEEeeCC---------
Q 021399            9 HERPLTYLKYNKD-GDLLFSCAKDHTPTVWFADNGERLGT-YRG----HNGAVWCCDVSRDSMTLITGSAD---------   73 (313)
Q Consensus         9 h~~~v~~~~fs~~-g~~l~s~s~d~~i~iw~~~~~~~~~~-~~~----H~~~V~~~~~~~~~~~l~s~s~D---------   73 (313)
                      +...+.++.++++ |.++++.. +..|.+||.+ ++.... ...    +...+.+++++++|++.++...+         
T Consensus        69 ~~~~~~~i~~~~~~g~l~v~~~-~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~  146 (314)
T 1pjx_A           69 YGGIPAGCQCDRDANQLFVADM-RLGLLVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTR  146 (314)
T ss_dssp             EECCEEEEEECSSSSEEEEEET-TTEEEEEETT-SCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCB
T ss_pred             CCCCCceEEEecCCCcEEEEEC-CCCEEEEeCC-CCEEEEEeccCCCccccCCcCEEECCCCCEEEEecCcccccccccc
Confidence            4567889999999 76566544 4478889988 665433 221    12357899999999888776655         


Q ss_pred             ------CcEEEEECCCCeEEEEecCCCCeeEEEee----cCCeEE-EEECCCceeccccceeeeeeeCCCCCCCceEEEe
Q 021399           74 ------QTAKLWNVETGAQLFTFNFDSPARSVDFA----VGDKLA-VITTDPFMELNSAIHVKRIARDPADQGGESVLIL  142 (313)
Q Consensus        74 ------~~v~vWd~~~~~~~~~~~~~~~~~~~~~~----~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  142 (313)
                            +.|..||.. ++.............+.+.    +++..+ +.....     ..+..++...............+
T Consensus       147 ~~~~~~~~l~~~~~~-g~~~~~~~~~~~~~~i~~~~~~d~dg~~l~v~~~~~-----~~i~~~~~~~~g~~~~~~~~~~~  220 (314)
T 1pjx_A          147 SMQEKFGSIYCFTTD-GQMIQVDTAFQFPNGIAVRHMNDGRPYQLIVAETPT-----KKLWSYDIKGPAKIENKKVWGHI  220 (314)
T ss_dssp             TTSSSCEEEEEECTT-SCEEEEEEEESSEEEEEEEECTTSCEEEEEEEETTT-----TEEEEEEEEETTEEEEEEEEEEC
T ss_pred             cccCCCCeEEEECCC-CCEEEeccCCCCcceEEEecccCCCCCEEEEEECCC-----CeEEEEECCCCCccccceEEEEC
Confidence                  567777765 5443332222234566677    666433 332211     11111111100000000011222


Q ss_pred             cCCC-CceEEEEEccCCCEEEEeeCCCeEEEEECCCCceeeecccccCceeceEEEEECCCCCEEE-EeeCCCcEEEEEC
Q 021399          143 KGPQ-GRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFL-TGSLDKSAKLWDA  220 (313)
Q Consensus       143 ~~~~-~~i~~~~~~~~~~~i~t~~~d~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~-s~s~dg~i~iwd~  220 (313)
                      ..+. .....++++++++.+++...++.|.+||..+++.+..+.   .+...+.+++++++++.|. +...++.|..|++
T Consensus       221 ~~~~~~~p~~i~~d~~G~l~v~~~~~~~i~~~d~~~g~~~~~~~---~~~~~~~~i~~~~dg~~l~v~~~~~~~l~~~~~  297 (314)
T 1pjx_A          221 PGTHEGGADGMDFDEDNNLLVANWGSSHIEVFGPDGGQPKMRIR---CPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEW  297 (314)
T ss_dssp             CCCSSCEEEEEEEBTTCCEEEEEETTTEEEEECTTCBSCSEEEE---CSSSCEEEEEECTTSSEEEEEETTTTEEEEEEC
T ss_pred             CCCCCCCCCceEECCCCCEEEEEcCCCEEEEEcCCCCcEeEEEe---CCCCCceeEEECCCCCEEEEEeCCCCeEEEEeC
Confidence            3333 456788999999988887788899999998666554432   2346789999999999554 5555688999987


Q ss_pred             CC
Q 021399          221 RT  222 (313)
Q Consensus       221 ~~  222 (313)
                      ..
T Consensus       298 ~~  299 (314)
T 1pjx_A          298 QR  299 (314)
T ss_dssp             SS
T ss_pred             CC
Confidence            64

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=99.16  E-value=4.5e-09  Score=90.09  Aligned_cols=221  Identities=9%  Similarity=-0.070  Sum_probs=131.1

Q ss_pred             EEEEccCCCEEEEee----------CCCCeEEEeCCCCcEEEEecCCC-------CceEEEEECCCCCeEEEeeC--CCc
Q 021399           15 YLKYNKDGDLLFSCA----------KDHTPTVWFADNGERLGTYRGHN-------GAVWCCDVSRDSMTLITGSA--DQT   75 (313)
Q Consensus        15 ~~~fs~~g~~l~s~s----------~d~~i~iw~~~~~~~~~~~~~H~-------~~V~~~~~~~~~~~l~s~s~--D~~   75 (313)
                      .+.|+|||++++.+.          .++.|.+||..+++.+.++.-+.       ..-..++++|||++++.+..  +..
T Consensus        69 ~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~~~~~g~~P~~ia~SpDGk~lyVan~~~~~~  148 (368)
T 1mda_H           69 LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAA  148 (368)
T ss_dssp             EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCE
T ss_pred             ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCccccccCCCcceEEEcCCCCEEEEEccCCCCe
Confidence            699999999999886          36889999999999999886431       12346899999998888764  467


Q ss_pred             EEE--EECCCCeEEEEecCCC--------CeeEEEeecCCeEEEEECCC----ceeccccc-eeeeeee----CCCC---
Q 021399           76 AKL--WNVETGAQLFTFNFDS--------PARSVDFAVGDKLAVITTDP----FMELNSAI-HVKRIAR----DPAD---  133 (313)
Q Consensus        76 v~v--Wd~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~----~~~~~~~~-~~~~~~~----~~~~---  133 (313)
                      +.+  +|+.+   +..+....        ....+.+++++++.++..+.    ........ ....+..    .+..   
T Consensus       149 v~V~~iD~~t---v~~i~v~~~~~~~p~g~~~~~~~~~dg~~~~vd~~~~~~~~~~v~~~~t~~i~vg~~P~~~~~~~~~  225 (368)
T 1mda_H          149 AGLSVPGASD---DQLTKSASCFHIHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAAQANYPGML  225 (368)
T ss_dssp             EEEEETTTEE---EEEEECSSCCCCEEEETTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCEEETTTTEE
T ss_pred             EEEEEEchhh---ceEEECCCceEEccCCCeEEEEEcCCCCEEEEECccccccCCeEEEEeeeeeeCCCCccccccCCEE
Confidence            888  99876   22222111        01112233344433333221    00000000 0000000    0000   


Q ss_pred             ----CCCceEEEecCCC---------------------CceEEEEEccCCCEEEEeeC---------CCeEEEEECCCCc
Q 021399          134 ----QGGESVLILKGPQ---------------------GRINRAVWGPLNRTIISAGE---------DAIVRIWDTETGK  179 (313)
Q Consensus       134 ----~~~~~~~~~~~~~---------------------~~i~~~~~~~~~~~i~t~~~---------d~~i~lwd~~~~~  179 (313)
                          ...-.+....+..                     .....+.++|+++++..+..         ++.+.++|+.+.+
T Consensus       226 ~~vs~~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~  305 (368)
T 1mda_H          226 VWAVASSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQ  305 (368)
T ss_dssp             EECBSSCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCC
T ss_pred             EEEcCCEEEEEECCCCcceEEEEEEeccccccccccccCcceeeEEcCCCCEEEEEeccccCcccccCCCEEEEECCCCe
Confidence                0000000000000                     00111578999887776532         2356699999998


Q ss_pred             eeeecccccCceeceEEEEECCCCC-EEEEee-CCCcEEEEECCCCcEEEEEecCCceeEEEecc
Q 021399          180 LLKESDKETGHKKTITSLAKAADGS-HFLTGS-LDKSAKLWDARTLELIKTYVTERPVNAVTMSP  242 (313)
Q Consensus       180 ~~~~~~~~~~h~~~v~~~~~s~~~~-~l~s~s-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~p  242 (313)
                      .+.++..    ......+++++||+ .+++.. .++.|.++|+++++.+.++........+++++
T Consensus       306 vv~~i~v----g~~p~gi~~s~Dg~~l~va~~~~~~~VsVID~~t~kvv~~I~vg~~P~~i~~~~  366 (368)
T 1mda_H          306 TSGPISN----GHDSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQSSVELDKGPESLSVQN  366 (368)
T ss_dssp             EEECCEE----EEEECEEEECCSSSCEEEEEETTTTEEEEEESSSCEEEEECCCCSCCCEEECCC
T ss_pred             EEEEEEC----CCCcceEEECCCCCEEEEEccCCCCeEEEEECCCCcEEEEEECCCCCCEEEeec
Confidence            8876642    23688999999998 466666 59999999999999999987665556666543

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=99.13  E-value=3e-08  Score=79.80  Aligned_cols=184  Identities=14%  Similarity=0.107  Sum_probs=125.4

Q ss_pred             ceeEEEEccCCCEEEEeeCCC--CeEEEeCCCCcEEEEecCCCCceEEEEECCCCC-eEEEeeCCCcEEEEECCCCeEEE
Q 021399           12 PLTYLKYNKDGDLLFSCAKDH--TPTVWFADNGERLGTYRGHNGAVWCCDVSRDSM-TLITGSADQTAKLWNVETGAQLF   88 (313)
Q Consensus        12 ~v~~~~fs~~g~~l~s~s~d~--~i~iw~~~~~~~~~~~~~H~~~V~~~~~~~~~~-~l~s~s~D~~v~vWd~~~~~~~~   88 (313)
                      ....|.|+ ++.++.|++.+|  .|+++|+++++.+.++.-.. ..+...+.++++ +.+..-.++.+.++|..+.+.+.
T Consensus        44 ftqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~-~~FgeGit~~g~~ly~ltw~~~~v~v~D~~t~~~~~  121 (262)
T 3nol_A           44 FTEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQIELGK-RYFGEGISDWKDKIVGLTWKNGLGFVWNIRNLRQVR  121 (262)
T ss_dssp             EEEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCEEEEEECCT-TCCEEEEEEETTEEEEEESSSSEEEEEETTTCCEEE
T ss_pred             ccceEEEE-CCEEEEECCCCCCceEEEEECCCCcEEEEEecCC-ccceeEEEEeCCEEEEEEeeCCEEEEEECccCcEEE
Confidence            45789999 777888888876  89999999999988876432 333322223344 44444568999999999888765


Q ss_pred             EecCCCCeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEccCCCEEEEeeCCC
Q 021399           89 TFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDA  168 (313)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~t~~~d~  168 (313)
                      .+......                            +                           .+.+++..++.+..++
T Consensus       122 ti~~~~eG----------------------------~---------------------------glt~dg~~L~~SdGs~  146 (262)
T 3nol_A          122 SFNYDGEG----------------------------W---------------------------GLTHNDQYLIMSDGTP  146 (262)
T ss_dssp             EEECSSCC----------------------------C---------------------------CEEECSSCEEECCSSS
T ss_pred             EEECCCCc----------------------------e---------------------------EEecCCCEEEEECCCC
Confidence            54321100                            0                           0112344455555678


Q ss_pred             eEEEEECCCCceeeeccccc-Cce-eceEEEEECCCCCEEEEeeCCCcEEEEECCCCcEEEEEecC-------------C
Q 021399          169 IVRIWDTETGKLLKESDKET-GHK-KTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTE-------------R  233 (313)
Q Consensus       169 ~i~lwd~~~~~~~~~~~~~~-~h~-~~v~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~-------------~  233 (313)
                      .|.++|..+.+.+.++.... ++. ..++.+.+. +|...+..-.++.|.+.|.++++.+..+...             .
T Consensus       147 ~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~-~G~lyan~w~~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~  225 (262)
T 3nol_A          147 VLRFLDPESLTPVRTITVTAHGEELPELNELEWV-DGEIFANVWQTNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPID  225 (262)
T ss_dssp             EEEEECTTTCSEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTSSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCC
T ss_pred             eEEEEcCCCCeEEEEEEeccCCccccccceeEEE-CCEEEEEEccCCeEEEEECCCCcEEEEEECCcCccccccccCcCC
Confidence            89999999988877654321 122 234566775 6765555556889999999999999888642             2


Q ss_pred             ceeEEEeccCCCEEEEcccc
Q 021399          234 PVNAVTMSPLLDHVVLGGGQ  253 (313)
Q Consensus       234 ~~~~~~~~p~~~~~~~~~~~  253 (313)
                      ..+.+|++|..+.++++|..
T Consensus       226 vlNGIA~dp~~~~lfVTGK~  245 (262)
T 3nol_A          226 VLNGIAWDKEHHRLFVTGKL  245 (262)
T ss_dssp             CEEEEEEETTTTEEEEEETT
T ss_pred             ceEEEEEcCCCCEEEEECCC
Confidence            35899999999999998753

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=99.12  E-value=7e-07  Score=73.84  Aligned_cols=222  Identities=10%  Similarity=0.001  Sum_probs=141.6

Q ss_pred             cccceeEEEEccCCCEEEEeeCCCCeEEEeCCCCcEE-EEecCCCCceEEEEECCCCCeEEEeeCCCcEEEEECCCCeEE
Q 021399            9 HERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERL-GTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQL   87 (313)
Q Consensus         9 h~~~v~~~~fs~~g~~l~s~s~d~~i~iw~~~~~~~~-~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~v~vWd~~~~~~~   87 (313)
                      +...+..++++++|...++...++.|..+|.+ ++.. ..+......+.++++.++++++++...++.|..||.. ++..
T Consensus        60 ~~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~-g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~  137 (300)
T 2qc5_A           60 PDAKVMCLIVSSLGDIWFTENGANKIGKLSKK-GGFTEYPLPQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD-GTIY  137 (300)
T ss_dssp             TTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SCEE
T ss_pred             CCCcceeEEECCCCCEEEEecCCCeEEEECCC-CCeEEecCCCCCCCCccceECCCCCEEEEccCCCeEEEECCC-CCEE
Confidence            34568899999999988877778889999987 5543 2233344678999999999988887778899999987 5544


Q ss_pred             EE-ec-CCCCeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceE-EEecCCCCceEEEEEccCCCEEEEe
Q 021399           88 FT-FN-FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESV-LILKGPQGRINRAVWGPLNRTIISA  164 (313)
Q Consensus        88 ~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~i~~~~~~~~~~~i~t~  164 (313)
                      .. .. ....+..+.+.+++.+.+.....-       .+..+  +.   .+... .....+...+..+.+.++++.+++.
T Consensus       138 ~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~-------~i~~~--~~---~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~  205 (300)
T 2qc5_A          138 EYDLPNKGSYPAFITLGSDNALWFTENQNN-------SIGRI--TN---TGKLEEYPLPTNAAAPVGITSGNDGALWFVE  205 (300)
T ss_dssp             EEECSSTTCCEEEEEECTTSSEEEEETTTT-------EEEEE--CT---TCCEEEEECSSTTCCEEEEEECTTSSEEEEE
T ss_pred             EccCCCCCCCceeEEECCCCCEEEEecCCC-------eEEEE--CC---CCcEEEeeCCCCCCCcceEEECCCCCEEEEc
Confidence            22 22 123456666767666555443110       01111  00   11111 1122334567788899988877776


Q ss_pred             eCCCeEEEEECCCCceeeecccccCceeceEEEEECCCCCEEEEeeCCCcEEEEECCCCcEEEEEec---CCceeEEEec
Q 021399          165 GEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVT---ERPVNAVTMS  241 (313)
Q Consensus       165 ~~d~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~---~~~~~~~~~~  241 (313)
                      ...+.|.+||. +++... ... ..+...+.+++++++|...++...++.|..||. +++.. .+..   ...+.++++.
T Consensus       206 ~~~~~i~~~~~-~g~~~~-~~~-~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~-~~~~~~~~~~~~~i~~~  280 (300)
T 2qc5_A          206 IMGNKIGRITT-TGEISE-YDI-PTPNARPHAITAGKNSEIWFTEWGANQIGRITN-DNTIQ-EYQLQTENAEPHGITFG  280 (300)
T ss_dssp             TTTTEEEEECT-TCCEEE-EEC-SSTTCCEEEEEECSTTCEEEEETTTTEEEEECT-TSCEE-EEECCSTTCCCCCEEEC
T ss_pred             cCCCEEEEEcC-CCcEEE-EEC-CCCCCCceEEEECCCCCEEEeccCCCeEEEECC-CCcEE-EEECCccCCccceeEeC
Confidence            66788999998 444332 111 123456889999999997777766789999998 44432 3321   2346777777


Q ss_pred             cCCCEEEEc
Q 021399          242 PLLDHVVLG  250 (313)
Q Consensus       242 p~~~~~~~~  250 (313)
                      +++. ++++
T Consensus       281 ~~g~-l~v~  288 (300)
T 2qc5_A          281 KDGS-VWFA  288 (300)
T ss_dssp             TTSC-EEEE
T ss_pred             CCCC-EEEE
Confidence            7765 3443

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=99.12  E-value=1.8e-08  Score=81.08  Aligned_cols=181  Identities=10%  Similarity=0.068  Sum_probs=125.1

Q ss_pred             ceeEEEEccCCCEEEEeeCCCCeEEEeCCCCcEEEEecCCCCceEE--EEECCCCCeEEEeeCCCcEEEEECCCCeEEEE
Q 021399           12 PLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWC--CDVSRDSMTLITGSADQTAKLWNVETGAQLFT   89 (313)
Q Consensus        12 ~v~~~~fs~~g~~l~s~s~d~~i~iw~~~~~~~~~~~~~H~~~V~~--~~~~~~~~~l~s~s~D~~v~vWd~~~~~~~~~   89 (313)
                      ....|.|+ ++.++++.+.+|.|+++|+++++.+.++ - ....+.  +++.. +++.+..-.++.+.++|..+.+.+..
T Consensus        56 ftqGL~~~-~~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l-~~~~FgeGit~~g-~~Ly~ltw~~~~v~V~D~~Tl~~~~t  131 (268)
T 3nok_A           56 FTQGLVFH-QGHFFESTGHQGTLRQLSLESAQPVWME-R-LGNIFAEGLASDG-ERLYQLTWTEGLLFTWSGMPPQRERT  131 (268)
T ss_dssp             CEEEEEEE-TTEEEEEETTTTEEEECCSSCSSCSEEE-E-CTTCCEEEEEECS-SCEEEEESSSCEEEEEETTTTEEEEE
T ss_pred             ccceEEEE-CCEEEEEcCCCCEEEEEECCCCcEEeEE-C-CCCcceeEEEEeC-CEEEEEEccCCEEEEEECCcCcEEEE
Confidence            45688998 4677888888899999999999987776 2 223333  45432 34555556789999999999887765


Q ss_pred             ecCCCCeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEccCCCEEEEeeCCCe
Q 021399           90 FNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAI  169 (313)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~t~~~d~~  169 (313)
                      +......                                                     ..  +.+++..++.+..++.
T Consensus       132 i~~~~eG-----------------------------------------------------wG--Lt~Dg~~L~vSdGs~~  156 (268)
T 3nok_A          132 TRYSGEG-----------------------------------------------------WG--LCYWNGKLVRSDGGTM  156 (268)
T ss_dssp             EECSSCC-----------------------------------------------------CC--EEEETTEEEEECSSSE
T ss_pred             EeCCCce-----------------------------------------------------eE--EecCCCEEEEECCCCE
Confidence            5321100                                                     00  1123455665666899


Q ss_pred             EEEEECCCCceeeecccccCce--eceEEEEECCCCCEEEEeeCCCcEEEEECCCCcEEEEEecC--------------C
Q 021399          170 VRIWDTETGKLLKESDKETGHK--KTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTE--------------R  233 (313)
Q Consensus       170 i~lwd~~~~~~~~~~~~~~~h~--~~v~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~--------------~  233 (313)
                      |.++|..+.+.++++.....-.  ..++.+.|. +|...+..-.++.|.+.|.++++.+..+...              .
T Consensus       157 l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~-dG~lyanvw~s~~I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~  235 (268)
T 3nok_A          157 LTFHEPDGFALVGAVQVKLRGQPVELINELECA-NGVIYANIWHSSDVLEIDPATGTVVGVIDASALTRAVAGQVTNPEA  235 (268)
T ss_dssp             EEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTCSEEEEECTTTCBEEEEEECHHHHHHHTTTCCCTTC
T ss_pred             EEEEcCCCCeEEEEEEeCCCCcccccccccEEe-CCEEEEEECCCCeEEEEeCCCCcEEEEEECCCCcccccccccCcCC
Confidence            9999999988877664322111  134667776 7765555556889999999999999887532              2


Q ss_pred             ceeEEEeccCCCEEEEccc
Q 021399          234 PVNAVTMSPLLDHVVLGGG  252 (313)
Q Consensus       234 ~~~~~~~~p~~~~~~~~~~  252 (313)
                      ..+.+|++|..+.++++|.
T Consensus       236 vlNGIA~dp~~~rlfVTGK  254 (268)
T 3nok_A          236 VLNGIAVEPGSGRIFMTGK  254 (268)
T ss_dssp             CEEEEEECTTTCCEEEEET
T ss_pred             ceEEEEEcCCCCEEEEeCC
Confidence            4689999999999998875

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=99.11  E-value=5.4e-08  Score=84.81  Aligned_cols=269  Identities=12%  Similarity=0.019  Sum_probs=154.9

Q ss_pred             cCCCEEEEeeCC-----CCeEEEeCCCCcEEEEecCCCCceEEEEECCCCCeEEEee----------CCCcEEEEECCCC
Q 021399           20 KDGDLLFSCAKD-----HTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGS----------ADQTAKLWNVETG   84 (313)
Q Consensus        20 ~~g~~l~s~s~d-----~~i~iw~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s----------~D~~v~vWd~~~~   84 (313)
                      +++++++.....     +.|.+.|.++.+.+.++.--..+  .++++||++.++.+.          .++.|.++|..+.
T Consensus        82 ~~~~~vyV~n~~~~~~~~~VsVID~~t~~vv~~I~vG~~P--gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~  159 (426)
T 3c75_H           82 PDARRVYIQDPAHFAAITQQFVIDGSTGRILGMTDGGFLP--HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTF  159 (426)
T ss_dssp             CCTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTC
T ss_pred             CCCCEEEEECCCcCCCCCeEEEEECCCCEEEEEEECCCCC--ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCC
Confidence            567777766553     68999999999999988755555  799999999877765          4679999999999


Q ss_pred             eEEEEecCC--------CCeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEcc
Q 021399           85 AQLFTFNFD--------SPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGP  156 (313)
Q Consensus        85 ~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~  156 (313)
                      +.+..+...        .....+.++++++.+++.....   ...+.+.+.      ...+.+..+.-...    ....|
T Consensus       160 ~vv~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~~---~~~VsVID~------~t~kvv~~I~v~g~----~~~~p  226 (426)
T 3c75_H          160 LPIADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFSP---APAVGVVDL------EGKTFDRMLDVPDC----YHIFP  226 (426)
T ss_dssp             CEEEEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECSS---SCEEEEEET------TTTEEEEEEECCSE----EEEEE
T ss_pred             cEEEEEECCCccccccCCCcceEEEcCCCCEEEEEecCC---CCeEEEEEC------CCCeEEEEEEcCCc----eeecc
Confidence            887665432        2345677888777666543100   000111111      11122222221110    11223


Q ss_pred             C-CCEEEEeeCCCeEEEEECCCCceeeecc--cccCceeceEEEEECCCCCEEEEeeCCCcEEEEECCCCcEE--EEEec
Q 021399          157 L-NRTIISAGEDAIVRIWDTETGKLLKESD--KETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELI--KTYVT  231 (313)
Q Consensus       157 ~-~~~i~t~~~d~~i~lwd~~~~~~~~~~~--~~~~h~~~v~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~--~~~~~  231 (313)
                      . .+.+++.+.||.+.+.+..+++......  ...+.......+.+.+++..++..+..+.+.+.|+......  ..+..
T Consensus       227 ~g~~~~v~~~~dG~~~~V~~~~~~v~~~~~~~~~v~~~p~~~~~~~~~dg~~~~~~s~~g~V~ViD~~~~~~~v~~~~~~  306 (426)
T 3c75_H          227 ASPTVFYMNCRDGSLARVDFADGETKVTNTEVFHTEDELLINHPAFSLRSGRLVWPTYTGKIFQADLTAEGATFRAPIEA  306 (426)
T ss_dssp             EETTEEEEEETTSSEEEEECCTTCCEEEECCCCSCTTSCBCSCCEECTTTCEEEEEBTTSEEEEEEECSSCEEECCCEES
T ss_pred             CCCcEEEEEcCCCCEEEEECCCCcEEEEeeeeeccCCCceeeEeeecCCCCEEEEEeCCCcEEEEeccCCceEEeeeeee
Confidence            2 2455666778888888875554332110  00011111123467888888777778899999998765432  11110


Q ss_pred             -----------CCceeEEEeccCCCEEEEcccccCceeEeeccCCCceeeeeeehhhhhhhccccccccceeEEEECCCC
Q 021399          232 -----------ERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDG  300 (313)
Q Consensus       232 -----------~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~fspdg  300 (313)
                                 +.....++++|+++.++++-.....    +-++.+..++..+|..+.+.+..+.. ....+.++|+|||
T Consensus       307 ~~~~~i~~g~~p~g~~~va~s~dg~rlyVa~~~~~~----gthk~~s~~VsVID~~T~kvv~~I~v-g~~P~gia~spDg  381 (426)
T 3c75_H          307 LTEAERADDWRPGGWQQTAYHRQSDRIYLLVDQRDE----WKHKAASRFVVVLNAETGERINKIEL-GHEIDSINVSQDA  381 (426)
T ss_dssp             SCTTTGGGTEEECSSSCEEEEGGGTEEEEEEEECCT----TCTTSCEEEEEEEETTTCCEEEEEEE-EEEECEEEECCSS
T ss_pred             ccccccccccccCCceeeEEcCCCCEEEEEeccccc----ccccCCCCEEEEEECCCCeEEEEEEC-CCCcCeEEEccCC
Confidence                       1112236888888877775321000    00111122455666666666555432 3357999999999


Q ss_pred             CeeEEEEE
Q 021399          301 KRYGFLLL  308 (313)
Q Consensus       301 k~~~~~~~  308 (313)
                      |.+.|...
T Consensus       382 ~~~lyv~n  389 (426)
T 3c75_H          382 EPLLYALS  389 (426)
T ss_dssp             SCEEEEEE
T ss_pred             CEEEEEEc
Confidence            96556544

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=99.10  E-value=1.9e-08  Score=94.67  Aligned_cols=201  Identities=13%  Similarity=0.037  Sum_probs=120.4

Q ss_pred             eEEEEccCCCEEEEeeCCCC--------------eEEEeCCCCc----EEEEecCCCCceEEEEECCCCCeEEEeeCCC-
Q 021399           14 TYLKYNKDGDLLFSCAKDHT--------------PTVWFADNGE----RLGTYRGHNGAVWCCDVSRDSMTLITGSADQ-   74 (313)
Q Consensus        14 ~~~~fs~~g~~l~s~s~d~~--------------i~iw~~~~~~----~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~-   74 (313)
                      ..++|+|| +.|+.++.|+.              |++|++.++.    .+.....|...+..+.|+|||+.++..+.++ 
T Consensus       212 ~~~~wspD-~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~  290 (741)
T 1yr2_A          212 SGLAWLGN-DALLYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQSADQPVFATPELPKRGHGASVSSDGRWVVITSSEGT  290 (741)
T ss_dssp             CCCEESTT-SEEEEEECCCC--------CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECTT
T ss_pred             ccEEEECC-CEEEEEEecCcccccccccCCCCCEEEEEECCCCchhCEEEeccCCCCeEEEEEEECCCCCEEEEEEEccC
Confidence            57899999 99999887664              8889987765    3333334445688999999999887766544 


Q ss_pred             ----cEEEEECCCC--e-EEEEecCCCCeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCC
Q 021399           75 ----TAKLWNVETG--A-QLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQG  147 (313)
Q Consensus        75 ----~v~vWd~~~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  147 (313)
                          .|.+||+.++  + ..................++.+++.+....    ...++..+...  .........+..+..
T Consensus       291 ~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~dg~~l~~~s~~~~----~~~~l~~~d~~--~~~~~~~~l~~~~~~  364 (741)
T 1yr2_A          291 DPVNTVHVARVTNGKIGPVTALIPDLKAQWDFVDGVGDQLWFVSGDGA----PLKKIVRVDLS--GSTPRFDTVVPESKD  364 (741)
T ss_dssp             CSCCEEEEEEEETTEECCCEEEECSSSSCEEEEEEETTEEEEEECTTC----TTCEEEEEECS--SSSCEEEEEECCCSS
T ss_pred             CCcceEEEEECCCCCCcccEEecCCCCceEEEEeccCCEEEEEECCCC----CCCEEEEEeCC--CCccccEEEecCCCC
Confidence                7999999876  3 232222222222222333555555443210    01111111111  000122233344444


Q ss_pred             ceEEEEEccCCCEEEEeeCCCeEEEEECC-CCceeeecccccCceeceEEEEECCCCCEEE----EeeCCCcEEEEECCC
Q 021399          148 RINRAVWGPLNRTIISAGEDAIVRIWDTE-TGKLLKESDKETGHKKTITSLAKAADGSHFL----TGSLDKSAKLWDART  222 (313)
Q Consensus       148 ~i~~~~~~~~~~~i~t~~~d~~i~lwd~~-~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~----s~s~dg~i~iwd~~~  222 (313)
                      .+..+.+. .+..+++...|+..+||... +++..+.+..  .+...+..++++|+++.++    +....++|.+||+.+
T Consensus       365 ~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~~g~~~~~l~~--~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~t  441 (741)
T 1yr2_A          365 NLESVGIA-GNRLFASYIHDAKSQVLAFDLDGKPAGAVSL--PGIGSASGLSGRPGDRHAYLSFSSFTQPATVLALDPAT  441 (741)
T ss_dssp             EEEEEEEE-BTEEEEEEEETTEEEEEEEETTSCEEEECBC--SSSCEEEEEECCBTCSCEEEEEEETTEEEEEEEEETTT
T ss_pred             eEEEEEEE-CCEEEEEEEECCEEEEEEEeCCCCceeeccC--CCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCC
Confidence            56666776 55677888888887777543 3444444431  2356788899999988666    233457899999988


Q ss_pred             Cc
Q 021399          223 LE  224 (313)
Q Consensus       223 ~~  224 (313)
                      ++
T Consensus       442 g~  443 (741)
T 1yr2_A          442 AK  443 (741)
T ss_dssp             TE
T ss_pred             Cc
Confidence            76

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=99.10  E-value=2.6e-08  Score=85.34  Aligned_cols=249  Identities=9%  Similarity=0.019  Sum_probs=142.9

Q ss_pred             CeEEEeCCCCcEEEEecCCCCceEEEEECCCCCeEEEee----------CCCcEEEEECCCCeEEEEecCC--------C
Q 021399           33 TPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGS----------ADQTAKLWNVETGAQLFTFNFD--------S   94 (313)
Q Consensus        33 ~i~iw~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s----------~D~~v~vWd~~~~~~~~~~~~~--------~   94 (313)
                      .|.+.|.++++.+.++..-..+  .+.++||++.++.+.          .+++|.+||+.+++.+..+...        .
T Consensus        47 ~vsvID~~t~~v~~~i~vG~~P--~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~~~~~g~  124 (368)
T 1mda_H           47 ENWVSCAGCGVTLGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGP  124 (368)
T ss_dssp             EEEEEETTTTEEEEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSC
T ss_pred             eEEEEECCCCeEEEEEeCCCCC--ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCccccccCC
Confidence            7789999999999998755555  699999999887775          4789999999999988776543        2


Q ss_pred             CeeEEEeecCCeEEEEEC-C--Cceec---cccceeeeeeeCC--------------CCCCCceE-EEecCC---CCceE
Q 021399           95 PARSVDFAVGDKLAVITT-D--PFMEL---NSAIHVKRIARDP--------------ADQGGESV-LILKGP---QGRIN  150 (313)
Q Consensus        95 ~~~~~~~~~~~~~~~~~~-~--~~~~~---~~~~~~~~~~~~~--------------~~~~~~~~-~~~~~~---~~~i~  150 (313)
                      ....+.++|+++.+++.. .  ....+   +... ...+....              ....+..+ ......   .+.+.
T Consensus       125 ~P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~t-v~~i~v~~~~~~~p~g~~~~~~~~~dg~~~~vd~~~~~~~~~~v~  203 (368)
T 1mda_H          125 RVHIIGNCASSACLLFFLFGSSAAAGLSVPGASD-DQLTKSASCFHIHPGAAATHYLGSCPASLAASDLAAAPAAAGIVG  203 (368)
T ss_dssp             CTTSEEECTTSSCEEEEECSSSCEEEEEETTTEE-EEEEECSSCCCCEEEETTEEECCCCTTSCEEEECCSSCCCCEECC
T ss_pred             CcceEEEcCCCCEEEEEccCCCCeEEEEEEchhh-ceEEECCCceEEccCCCeEEEEEcCCCCEEEEECccccccCCeEE
Confidence            356778888776655543 1  11111   1111 11111000              00000000 011100   00000


Q ss_pred             ------------EEEEccCCCEEEEeeCCCeEEEEECCCCc--eeeecccc------cC-ceeceEEEEECCCCCEEEEe
Q 021399          151 ------------RAVWGPLNRTIISAGEDAIVRIWDTETGK--LLKESDKE------TG-HKKTITSLAKAADGSHFLTG  209 (313)
Q Consensus       151 ------------~~~~~~~~~~i~t~~~d~~i~lwd~~~~~--~~~~~~~~------~~-h~~~v~~~~~s~~~~~l~s~  209 (313)
                                  -.. .+.+..++..+. +.+.+.|.....  .+..+...      .+ .......+++++|++.++.+
T Consensus       204 ~~~t~~i~vg~~P~~-~~~~~~~~~vs~-~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~v~~s~dg~~lyV~  281 (368)
T 1mda_H          204 AQCTGAQNCSSQAAQ-ANYPGMLVWAVA-SSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMIL  281 (368)
T ss_dssp             CCSCTTSCBCSCCEE-ETTTTEEEECBS-SCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEE
T ss_pred             EEeeeeeeCCCCccc-cccCCEEEEEcC-CEEEEEECCCCcceEEEEEEeccccccccccccCcceeeEEcCCCCEEEEE
Confidence                        001 344444555555 788888886432  22221110      00 01111226799999988765


Q ss_pred             eC---------CCcEEEEECCCCcEEEEEecCCceeEEEeccCCCEEEEcccccCceeEeeccCCCceeeeeeehhhhhh
Q 021399          210 SL---------DKSAKLWDARTLELIKTYVTERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEE  280 (313)
Q Consensus       210 s~---------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  280 (313)
                      ..         ++.+.++|+++++.+..+........++++|++..++++.....+.+            ..+|..+.+.
T Consensus       282 ~~~~~~~~~~~~~~~~ViD~~t~~vv~~i~vg~~p~gi~~s~Dg~~l~va~~~~~~~V------------sVID~~t~kv  349 (368)
T 1mda_H          282 TVEHSRSCLAAAENTSSVTASVGQTSGPISNGHDSDAIIAAQDGASDNYANSAGTEVL------------DIYDAASDQD  349 (368)
T ss_dssp             EEECSSCTTSCEEEEEEEESSSCCEEECCEEEEEECEEEECCSSSCEEEEEETTTTEE------------EEEESSSCEE
T ss_pred             eccccCcccccCCCEEEEECCCCeEEEEEECCCCcceEEECCCCCEEEEEccCCCCeE------------EEEECCCCcE
Confidence            43         23566999999999998876667899999999987766654222333            3455555555


Q ss_pred             hccccccccceeEEEECCC
Q 021399          281 IGGVKGHFGPINALAFNPD  299 (313)
Q Consensus       281 ~~~~~~h~~~V~~~~fspd  299 (313)
                      +..+... ..-+.++|.++
T Consensus       350 v~~I~vg-~~P~~i~~~~~  367 (368)
T 1mda_H          350 QSSVELD-KGPESLSVQNE  367 (368)
T ss_dssp             EEECCCC-SCCCEEECCCC
T ss_pred             EEEEECC-CCCCEEEeecC
Confidence            4444432 33466666653

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=99.09  E-value=3e-08  Score=92.17  Aligned_cols=267  Identities=14%  Similarity=0.112  Sum_probs=147.2

Q ss_pred             CCCEEEEeeCCCCeEEEeCCCCcEEEEecCC-C----CceEE-EEECCCCCeEEEeeC------CCcEEEEECCCCeEEE
Q 021399           21 DGDLLFSCAKDHTPTVWFADNGERLGTYRGH-N----GAVWC-CDVSRDSMTLITGSA------DQTAKLWNVETGAQLF   88 (313)
Q Consensus        21 ~g~~l~s~s~d~~i~iw~~~~~~~~~~~~~H-~----~~V~~-~~~~~~~~~l~s~s~------D~~v~vWd~~~~~~~~   88 (313)
                      ++..|+.++.|+.+..+|.++|+.+.++..+ .    ..+.+ ..+ .++ .++.++.      ++.|+.+|..+++.++
T Consensus       127 ~~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~~p~v-~~~-~v~v~~~~~~~~~~g~v~a~D~~tG~~~W  204 (677)
T 1kb0_A          127 WKGKVYVGAWDGRLIALDAATGKEVWHQNTFEGQKGSLTITGAPRV-FKG-KVIIGNGGAEYGVRGYITAYDAETGERKW  204 (677)
T ss_dssp             ETTEEEEECTTSEEEEEETTTCCEEEEEETTTTCCSSCBCCSCCEE-ETT-EEEECCBCTTTCCBCEEEEEETTTCCEEE
T ss_pred             ECCEEEEEcCCCEEEEEECCCCCEEeeecCCcCcCcCcccccCcEE-ECC-EEEEEecccccCCCCEEEEEECCCCcEEE
Confidence            4668888999999999999999999888765 2    12211 111 134 4444443      7999999999999998


Q ss_pred             EecCCCCe---------------------------------eEEEeecCCeEEEEECCCceeccccc---------ee-e
Q 021399           89 TFNFDSPA---------------------------------RSVDFAVGDKLAVITTDPFMELNSAI---------HV-K  125 (313)
Q Consensus        89 ~~~~~~~~---------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~-~  125 (313)
                      .+....+.                                 ..+.+.+....+.+....-.......         .. .
T Consensus       205 ~~~~~~~~~~~~~~~~~~~~g~~~w~~~g~~~~~~~g~~~w~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~s  284 (677)
T 1kb0_A          205 RWFSVPGDPSKPFEDESMKRAARTWDPSGKWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLAS  284 (677)
T ss_dssp             EEESSCCCTTSCCSSHHHHHHHTTSCGGGCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTE
T ss_pred             EeccCCCCccccccccccccccccccccCceeEeCCCcccccceeEcCCCCEEEEECCCCccccCCCCCccCCCCeeeEE
Confidence            77542211                                 12334443333333322100000000         00 0


Q ss_pred             eeeeCCCCCCCceEEEecC--CC-------CceEEEEEccCC---CEEEEeeCCCeEEEEECCCCceeeeccccc-C---
Q 021399          126 RIARDPADQGGESVLILKG--PQ-------GRINRAVWGPLN---RTIISAGEDAIVRIWDTETGKLLKESDKET-G---  189 (313)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~~--~~-------~~i~~~~~~~~~---~~i~t~~~d~~i~lwd~~~~~~~~~~~~~~-~---  189 (313)
                      -+..+.  .+++.+-.++.  |.       .....+....+|   ..++.++.+|.++++|..+++.+-...... .   
T Consensus       285 v~AlD~--~TG~~~W~~~~~~~d~wd~~~~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG~~l~~~~~~~~~~~~  362 (677)
T 1kb0_A          285 IVALDP--DTGKYKWHYQETPGDNWDYTSTQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWAS  362 (677)
T ss_dssp             EEEECT--TTCCEEEEEESSTTCCSCCCCCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEE
T ss_pred             EEEEEC--CCCCEEEEEecCCCcccccccCCCcEEEecccCCcEeeEEEEECCCCEEEEEECCCCCEeccccccccCccc
Confidence            011111  11222222211  10       111112222345   578889999999999999998865432110 0   


Q ss_pred             ----ceece------------------------EEEEECCCCCEEEEeeCC-----------------------------
Q 021399          190 ----HKKTI------------------------TSLAKAADGSHFLTGSLD-----------------------------  212 (313)
Q Consensus       190 ----h~~~v------------------------~~~~~s~~~~~l~s~s~d-----------------------------  212 (313)
                          ....+                        ..++++|++..+++...+                             
T Consensus       363 ~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~  442 (677)
T 1kb0_A          363 GYDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNT  442 (677)
T ss_dssp             EECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCC
T ss_pred             ccCCCCceeeccccCcCCCccEECcCcccccCCCCceEcCCCCEEEEeChhcceeeeccccccccccccccccccccccc
Confidence                00000                        146788888887775432                             


Q ss_pred             --------------CcEEEEECCCCcEEEEEecCCceeEEEeccCCCEEEEcccccCceeEeeccCCCceeeeeeehhhh
Q 021399          213 --------------KSAKLWDARTLELIKTYVTERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQ  278 (313)
Q Consensus       213 --------------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  278 (313)
                                    |.|..||+++++.+-++....+.....+...++.++++.  .+..++.+|.++++.          
T Consensus       443 g~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~~~~~~g~~~~~g~~v~~g~--~dg~l~a~D~~tG~~----------  510 (677)
T 1kb0_A          443 AKFFNAEPPKSKPFGRLLAWDPVAQKAAWSVEHVSPWNGGTLTTAGNVVFQGT--ADGRLVAYHAATGEK----------  510 (677)
T ss_dssp             CEEECSSCCCSCCEEEEEEEETTTTEEEEEEEESSSCCCCEEEETTTEEEEEC--TTSEEEEEETTTCCE----------
T ss_pred             ccccccccCCCCCccEEEEEeCCCCcEEeecCCCCCCcCcceEeCCCEEEEEC--CCCcEEEEECCCCce----------
Confidence                          789999999999988877665555555666677666642  234455555555544          


Q ss_pred             hhhcccc-ccccceeEEEECCCCCeeEE
Q 021399          279 EEIGGVK-GHFGPINALAFNPDGKRYGF  305 (313)
Q Consensus       279 ~~~~~~~-~h~~~V~~~~fspdgk~~~~  305 (313)
                        ++.+. ++...-.-+.|++|||++..
T Consensus       511 --lw~~~~~~~~~~~p~~y~~~G~~~v~  536 (677)
T 1kb0_A          511 --LWEAPTGTGVVAAPSTYMVDGRQYVS  536 (677)
T ss_dssp             --EEEEECSSCCCSCCEEEEETTEEEEE
T ss_pred             --eeeeeCCCCcccCCEEEEeCCEEEEE
Confidence              33322 12222234566788887543

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=99.07  E-value=1.8e-07  Score=77.92  Aligned_cols=223  Identities=13%  Similarity=0.077  Sum_probs=129.8

Q ss_pred             CCCceEEEEECCC-CCeEEEeeCCCcEEEEECCCCeEEEEecCCCCeeEEEeecCCeEEEEECCCceeccccceeeeeee
Q 021399           51 HNGAVWCCDVSRD-SMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIAR  129 (313)
Q Consensus        51 H~~~V~~~~~~~~-~~~l~s~s~D~~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  129 (313)
                      +..--.+..|+++ +.++++...++.|..||..+++. ..+.....+..+.+.+++.+++........++..        
T Consensus        11 ~~~~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~-~~~~~~~~~~~i~~~~dG~l~v~~~~~l~~~d~~--------   81 (297)
T 3g4e_A           11 NCRCGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQV-QRVTMDAPVSSVALRQSGGYVATIGTKFCALNWK--------   81 (297)
T ss_dssp             CCSBEEEEEEETTTTEEEEEETTTTEEEEEETTTCCE-EEEECSSCEEEEEEBTTSSEEEEETTEEEEEETT--------
T ss_pred             CCccccCCeEECCCCEEEEEECCCCEEEEEECCCCcE-EEEeCCCceEEEEECCCCCEEEEECCeEEEEECC--------
Confidence            3334567888885 45667767789999999988765 3344456677888888777665543222111110        


Q ss_pred             CCCCCCCce--EEEec-C-CCCceEEEEEccCCCEEEEeeC-----------CCeEEEEECCCCceeeecccccCceece
Q 021399          130 DPADQGGES--VLILK-G-PQGRINRAVWGPLNRTIISAGE-----------DAIVRIWDTETGKLLKESDKETGHKKTI  194 (313)
Q Consensus       130 ~~~~~~~~~--~~~~~-~-~~~~i~~~~~~~~~~~i~t~~~-----------d~~i~lwd~~~~~~~~~~~~~~~h~~~v  194 (313)
                           .+..  +.... + ....++.+.++|+|+.+++...           .+.|..+|.. ++.. .+.   .+....
T Consensus        82 -----~g~~~~~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~-g~~~-~~~---~~~~~p  151 (297)
T 3g4e_A           82 -----EQSAVVLATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPD-HHVK-KYF---DQVDIS  151 (297)
T ss_dssp             -----TTEEEEEEECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTT-SCEE-EEE---EEESBE
T ss_pred             -----CCcEEEEEecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECC-CCEE-EEe---eccccc
Confidence                 0111  11111 1 2345788999999997665422           2345555543 3322 211   123456


Q ss_pred             EEEEECCCCCEE-EEeeCCCcEEEEEC--CCCcEE--EEEe----cCCceeEEEeccCCCEEEEcccccCceeEeeccCC
Q 021399          195 TSLAKAADGSHF-LTGSLDKSAKLWDA--RTLELI--KTYV----TERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRA  265 (313)
Q Consensus       195 ~~~~~s~~~~~l-~s~s~dg~i~iwd~--~~~~~~--~~~~----~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~  265 (313)
                      ..++|+|+++.+ ++.+.++.|..||+  +++...  +.+.    .......+++.+++. +.++... +..+.      
T Consensus       152 ngi~~spdg~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~-lwva~~~-~~~v~------  223 (297)
T 3g4e_A          152 NGLDWSLDHKIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGK-LWVACYN-GGRVI------  223 (297)
T ss_dssp             EEEEECTTSCEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSC-EEEEEET-TTEEE------
T ss_pred             cceEEcCCCCEEEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCC-EEEEEcC-CCEEE------
Confidence            789999999866 55566789999987  455532  1121    123467788888875 4444221 22233      


Q ss_pred             CceeeeeeehhhhhhhccccccccceeEEEEC-CCCCeeEEE
Q 021399          266 GKFEAKFFDKILQEEIGGVKGHFGPINALAFN-PDGKRYGFL  306 (313)
Q Consensus       266 ~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~fs-pdgk~~~~~  306 (313)
                            .||..+++.+..+..+...+++++|. ||++.+-+-
T Consensus       224 ------~~d~~tG~~~~~i~~p~~~~t~~~f~g~d~~~L~vt  259 (297)
T 3g4e_A          224 ------RLDPVTGKRLQTVKLPVDKTTSCCFGGKNYSEMYVT  259 (297)
T ss_dssp             ------EECTTTCCEEEEEECSSSBEEEEEEESGGGCEEEEE
T ss_pred             ------EEcCCCceEEEEEECCCCCceEEEEeCCCCCEEEEE
Confidence                  34444444444444455688999998 898876543

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=99.04  E-value=3e-07  Score=73.35  Aligned_cols=185  Identities=11%  Similarity=0.060  Sum_probs=123.9

Q ss_pred             cceeEEEEccCCCEEEEeeCCC--CeEEEeCCCCcEEEEecCCCCce-EEEEECCCCCeEEEeeCCCcEEEEECCCCeEE
Q 021399           11 RPLTYLKYNKDGDLLFSCAKDH--TPTVWFADNGERLGTYRGHNGAV-WCCDVSRDSMTLITGSADQTAKLWNVETGAQL   87 (313)
Q Consensus        11 ~~v~~~~fs~~g~~l~s~s~d~--~i~iw~~~~~~~~~~~~~H~~~V-~~~~~~~~~~~l~s~s~D~~v~vWd~~~~~~~   87 (313)
                      ...+.|.|++ +.++.|.+.+|  .|+++|+++++.+.+..-..... ..+++. .+++.+..-.++.+.++|..+.+.+
T Consensus        21 ~ftqGL~~~~-~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~-~~~ly~ltw~~~~v~v~D~~tl~~~   98 (243)
T 3mbr_X           21 AFTEGLFYLR-GHLYESTGETGRSSVRKVDLETGRILQRAEVPPPYFGAGIVAW-RDRLIQLTWRNHEGFVYDLATLTPR   98 (243)
T ss_dssp             CCEEEEEEET-TEEEEEECCTTSCEEEEEETTTCCEEEEEECCTTCCEEEEEEE-TTEEEEEESSSSEEEEEETTTTEEE
T ss_pred             cccccEEEEC-CEEEEECCCCCCceEEEEECCCCCEEEEEeCCCCcceeEEEEe-CCEEEEEEeeCCEEEEEECCcCcEE
Confidence            4567899986 66777777654  89999999999988775432211 223433 2445555567899999999998877


Q ss_pred             EEecCCCCeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEccCCCEEEEeeCC
Q 021399           88 FTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGED  167 (313)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~t~~~d  167 (313)
                      ..+......                                                     ..+  .+++..++.+..+
T Consensus        99 ~ti~~~~~G-----------------------------------------------------wgl--t~dg~~L~vSdgs  123 (243)
T 3mbr_X           99 ARFRYPGEG-----------------------------------------------------WAL--TSDDSHLYMSDGT  123 (243)
T ss_dssp             EEEECSSCC-----------------------------------------------------CEE--EECSSCEEEECSS
T ss_pred             EEEeCCCCc-----------------------------------------------------eEE--eeCCCEEEEECCC
Confidence            655321100                                                     001  1223445555568


Q ss_pred             CeEEEEECCCCceeeecccccC-ce-eceEEEEECCCCCEEEEeeCCCcEEEEECCCCcEEEEEecC-------------
Q 021399          168 AIVRIWDTETGKLLKESDKETG-HK-KTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTE-------------  232 (313)
Q Consensus       168 ~~i~lwd~~~~~~~~~~~~~~~-h~-~~v~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~-------------  232 (313)
                      +.|.++|..+.+.++++..... .. ..++.+.+. +|...+..-.+..|.+.|.++++.+..+...             
T Consensus       124 ~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~~-~G~lyanvw~s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~  202 (243)
T 3mbr_X          124 AVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELEWV-NGELLANVWLTSRIARIDPASGKVVAWIDLQALVPDADALTDST  202 (243)
T ss_dssp             SEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTTTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTT
T ss_pred             CeEEEEeCCCCeEEEEEEEccCCcccccceeeEEe-CCEEEEEECCCCeEEEEECCCCCEEEEEECCcCccccccccCCc
Confidence            8999999999888776643211 11 234566665 6665555546789999999999999887521             


Q ss_pred             -CceeEEEeccCCCEEEEcccc
Q 021399          233 -RPVNAVTMSPLLDHVVLGGGQ  253 (313)
Q Consensus       233 -~~~~~~~~~p~~~~~~~~~~~  253 (313)
                       ...+.+|++|..+.++++|..
T Consensus       203 ~~vlNGIA~d~~~~~lfVTGK~  224 (243)
T 3mbr_X          203 NDVLNGIAFDAEHDRLFVTGKR  224 (243)
T ss_dssp             SSCEEEEEEETTTTEEEEEETT
T ss_pred             CCceEEEEEcCCCCEEEEECCC
Confidence             246899999999999998753

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=99.03  E-value=1.2e-07  Score=88.35  Aligned_cols=71  Identities=13%  Similarity=0.132  Sum_probs=49.3

Q ss_pred             CCCEEEEeeCCCCeEEEeCCCCcEEEEecCC--CCceEEEEECC---CCCeEEEee-----CCCcEEEEECCCCeEEEEe
Q 021399           21 DGDLLFSCAKDHTPTVWFADNGERLGTYRGH--NGAVWCCDVSR---DSMTLITGS-----ADQTAKLWNVETGAQLFTF   90 (313)
Q Consensus        21 ~g~~l~s~s~d~~i~iw~~~~~~~~~~~~~H--~~~V~~~~~~~---~~~~l~s~s-----~D~~v~vWd~~~~~~~~~~   90 (313)
                      ++.+++.++.|+.+..+|.++|+.+..+...  ......+..+|   ++..++..+     .|+.|..||..+++.++.+
T Consensus       120 ~~g~v~v~~~dg~l~AlDa~TG~~~W~~~~~~~~~~~~~~~~sP~v~~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~  199 (689)
T 1yiq_A          120 WKGKVYVGVLDGRLEAIDAKTGQRAWSVDTRADHKRSYTITGAPRVVNGKVVIGNGGAEFGVRGYVTAYDAETGKEAWRF  199 (689)
T ss_dssp             ETTEEEEECTTSEEEEEETTTCCEEEEEECCSCTTSCCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEE
T ss_pred             ECCEEEEEccCCEEEEEECCCCCEeeeecCcCCCCCCccccCCcEEECCEEEEEeCCCccCCCCEEEEEECCCCcEEEEe
Confidence            3568888999999999999999998877642  11111111122   454444333     3789999999999998876


Q ss_pred             c
Q 021399           91 N   91 (313)
Q Consensus        91 ~   91 (313)
                      .
T Consensus       200 ~  200 (689)
T 1yiq_A          200 Y  200 (689)
T ss_dssp             E
T ss_pred             c
Confidence            5

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=98.99  E-value=7.2e-07  Score=75.36  Aligned_cols=217  Identities=13%  Similarity=0.004  Sum_probs=125.0

Q ss_pred             eEEEEECCCC-CeEEEeeCCCcEEEEECCCCeEEEEecCCCCeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCC
Q 021399           55 VWCCDVSRDS-MTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPAD  133 (313)
Q Consensus        55 V~~~~~~~~~-~~l~s~s~D~~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  133 (313)
                      ..+..|+|++ .++++...++.|..||+.+++.. .+.....+..+.+.+++.+++........++           .. 
T Consensus        51 ~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~-~~~~~~~v~~i~~~~dg~l~v~~~~gl~~~d-----------~~-  117 (326)
T 2ghs_A           51 GEGPTFDPASGTAWWFNILERELHELHLASGRKT-VHALPFMGSALAKISDSKQLIASDDGLFLRD-----------TA-  117 (326)
T ss_dssp             EEEEEEETTTTEEEEEEGGGTEEEEEETTTTEEE-EEECSSCEEEEEEEETTEEEEEETTEEEEEE-----------TT-
T ss_pred             CcCCeEeCCCCEEEEEECCCCEEEEEECCCCcEE-EEECCCcceEEEEeCCCeEEEEECCCEEEEE-----------CC-
Confidence            4567899974 46667667899999999887643 2334456777778888877766533211111           00 


Q ss_pred             CCCceEEEec----CCCCceEEEEEccCCCEEEEeeC------CCeEEEEECCCCceeeecccccCceeceEEEEECCCC
Q 021399          134 QGGESVLILK----GPQGRINRAVWGPLNRTIISAGE------DAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADG  203 (313)
Q Consensus       134 ~~~~~~~~~~----~~~~~i~~~~~~~~~~~i~t~~~------d~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~  203 (313)
                       .+.......    .....++.+.++|+++.+++...      .+.|..+|  +++. ..+.   .+......++|+|++
T Consensus       118 -~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~--~g~~-~~~~---~~~~~~~~i~~s~dg  190 (326)
T 2ghs_A          118 -TGVLTLHAELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA--KGKV-TKLF---ADISIPNSICFSPDG  190 (326)
T ss_dssp             -TCCEEEEECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE--TTEE-EEEE---EEESSEEEEEECTTS
T ss_pred             -CCcEEEEeeCCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe--CCcE-EEee---CCCcccCCeEEcCCC
Confidence             111111111    11245788999999987665442      25666666  4433 2221   123356789999999


Q ss_pred             CEEEE-eeCCCcEEEEECC--CC-cE-----EEEEe-cCCceeEEEeccCCCEEEEcccccCceeEeeccCCCceeeeee
Q 021399          204 SHFLT-GSLDKSAKLWDAR--TL-EL-----IKTYV-TERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFF  273 (313)
Q Consensus       204 ~~l~s-~s~dg~i~iwd~~--~~-~~-----~~~~~-~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  273 (313)
                      +.++. .+.++.|.+||++  ++ +.     +..+. .......+++.+++...++..+  ...+..++..         
T Consensus       191 ~~lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lwva~~~--~~~v~~~d~~---------  259 (326)
T 2ghs_A          191 TTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWG--EGAVDRYDTD---------  259 (326)
T ss_dssp             CEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEET--TTEEEEECTT---------
T ss_pred             CEEEEEECCCCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCCEEEEEeC--CCEEEEECCC---------
Confidence            87654 4557899999986  55 31     22221 1234567888887754333211  1223333431         


Q ss_pred             ehhhhhhhccccccccceeEEEEC-CCCCeeEEE
Q 021399          274 DKILQEEIGGVKGHFGPINALAFN-PDGKRYGFL  306 (313)
Q Consensus       274 ~~~~~~~~~~~~~h~~~V~~~~fs-pdgk~~~~~  306 (313)
                          ++.+..+..+...+++++|+ ||++.+-+.
T Consensus       260 ----g~~~~~i~~~~~~~~~~af~g~d~~~L~vt  289 (326)
T 2ghs_A          260 ----GNHIARYEVPGKQTTCPAFIGPDASRLLVT  289 (326)
T ss_dssp             ----CCEEEEEECSCSBEEEEEEESTTSCEEEEE
T ss_pred             ----CCEEEEEECCCCCcEEEEEecCCCCEEEEE
Confidence                22222233345578999998 998876443

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=98.97  E-value=3.4e-07  Score=79.41  Aligned_cols=195  Identities=12%  Similarity=0.044  Sum_probs=120.0

Q ss_pred             EEc--cCCCEEEEee-CCCCeEEEeCCCC----cEEEEec------C-CCCceEEEEECCCCCeEEEeeCC------CcE
Q 021399           17 KYN--KDGDLLFSCA-KDHTPTVWFADNG----ERLGTYR------G-HNGAVWCCDVSRDSMTLITGSAD------QTA   76 (313)
Q Consensus        17 ~fs--~~g~~l~s~s-~d~~i~iw~~~~~----~~~~~~~------~-H~~~V~~~~~~~~~~~l~s~s~D------~~v   76 (313)
                      .++  +++++|+..+ .+.+|.|.|+++.    +..++++      . -...-..+...|+| +++++..+      +.+
T Consensus        88 ~~~~~~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG-i~Vs~~g~~~g~~~g~v  166 (462)
T 2ece_A           88 NGKPNIERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA-IYISALGNEEGEGPGGI  166 (462)
T ss_dssp             TCCTTCCSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSC-EEEEEEEETTSCSCCEE
T ss_pred             ccCCCccCCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCe-EEEEcCCCcCCCCCCeE
Confidence            347  8888777654 5788999998755    6666663      0 11122345677999 77777666      678


Q ss_pred             EEEECCCCeEEEEecCCCCeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEcc
Q 021399           77 KLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGP  156 (313)
Q Consensus        77 ~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~  156 (313)
                      .+.|..+.+.+........                                                 ....-+.+-|+|
T Consensus       167 ~vlD~~T~~v~~~~~~~~~-------------------------------------------------~~~~~Yd~~~~p  197 (462)
T 2ece_A          167 LMLDHYSFEPLGKWEIDRG-------------------------------------------------DQYLAYDFWWNL  197 (462)
T ss_dssp             EEECTTTCCEEEECCSBCT-------------------------------------------------TCCCCCCEEEET
T ss_pred             EEEECCCCeEEEEEccCCC-------------------------------------------------CccccceEEECC
Confidence            8888888776554432100                                                 011122344566


Q ss_pred             CCCEEEEee-------------------CCCeEEEEECCCCceeeecccccCceeceEEEEE--CCCCCEEEEee-----
Q 021399          157 LNRTIISAG-------------------EDAIVRIWDTETGKLLKESDKETGHKKTITSLAK--AADGSHFLTGS-----  210 (313)
Q Consensus       157 ~~~~i~t~~-------------------~d~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~--s~~~~~l~s~s-----  210 (313)
                      .++.+++..                   .+.+|.+||+.+++.++++.... .......+.|  +|+++++..++     
T Consensus       198 ~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~tI~vg~-~g~~P~~i~f~~~Pdg~~aYV~~e~~~~  276 (462)
T 2ece_A          198 PNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHSLTLGE-ENRMALELRPLHDPTKLMGFINMVVSLK  276 (462)
T ss_dssp             TTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEEEESCT-TEEEEEEEEECSSTTCCEEEEEEEEETT
T ss_pred             CCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEeeEEecCC-CCCccceeEeeECCCCCEEEEEEeeecc
Confidence            666666653                   46899999999887777654321 2234555555  99999988777     


Q ss_pred             -CCCcEEEEECCCCc--EEEEE--ec-----------------CCceeEEEeccCCCEEEEcccccCceeEeecc
Q 021399          211 -LDKSAKLWDARTLE--LIKTY--VT-----------------ERPVNAVTMSPLLDHVVLGGGQDASAVTTTDH  263 (313)
Q Consensus       211 -~dg~i~iwd~~~~~--~~~~~--~~-----------------~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~  263 (313)
                       .+++|.+|..+.++  ..+.+  ..                 ......+.++|++..++++.... +.+..+|.
T Consensus       277 ~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~lS~DGrfLYVSnrg~-d~VavfdV  350 (462)
T 2ece_A          277 DLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDIDISLDDKFLYLSLWGI-GEVRQYDI  350 (462)
T ss_dssp             TCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEECCCCCCEEECTTSCEEEEEETTT-TEEEEEEC
T ss_pred             CCCceEEEEEecCCceeEEEEEeCCCccccccccccccccccCCCceeEEEECCCCCEEEEEeCCC-CEEEEEEe
Confidence             46688776554432  11111  10                 12356788999999998875433 34555553

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=98.96  E-value=2.8e-08  Score=92.83  Aligned_cols=193  Identities=13%  Similarity=0.005  Sum_probs=112.1

Q ss_pred             CCCCceEEEEECCCCCeEE-----EeeCCCcEEEEECCCCeEEEEecCCCCeeEEEeecCCeEEEEECCCceecccccee
Q 021399           50 GHNGAVWCCDVSRDSMTLI-----TGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHV  124 (313)
Q Consensus        50 ~H~~~V~~~~~~~~~~~l~-----s~s~D~~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  124 (313)
                      +|...+..++|||||++++     +|+.+.+|++||+.+++.+.......                              
T Consensus       126 ~~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~~~~~------------------------------  175 (693)
T 3iuj_A          126 DGTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLETPLKDV------------------------------  175 (693)
T ss_dssp             TSCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEEEEEEE------------------------------
T ss_pred             CCcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCccccCCc------------------------------
Confidence            4666788999999999777     34444689999999887532100000                              


Q ss_pred             eeeeeCCCCCCCceEEEecCCCCceEEEEEccCCCEEEEeeCC-------------CeEEEEECCCCcee-eecccccC-
Q 021399          125 KRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGED-------------AIVRIWDTETGKLL-KESDKETG-  189 (313)
Q Consensus       125 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~t~~~d-------------~~i~lwd~~~~~~~-~~~~~~~~-  189 (313)
                                             +...+.|+ +++.|+.+..+             ..|++|++.+...- ..+..... 
T Consensus       176 -----------------------k~~~~~Ws-Dg~~l~y~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~  231 (693)
T 3iuj_A          176 -----------------------KFSGISWL-GNEGFFYSSYDKPDGSELSARTDQHKVYFHRLGTAQEDDRLVFGAIPA  231 (693)
T ss_dssp             -----------------------ESCCCEEE-TTTEEEEEESSCCC-------CCCCEEEEEETTSCGGGCEEEESCSGG
T ss_pred             -----------------------eeccEEEe-CCCEEEEEEecCcccccccccCCCcEEEEEECCCCcccceEEEecCCC
Confidence                                   01123455 55555555544             35999998765421 11221222 


Q ss_pred             ceeceEEEEECCCCCEEEEeeC----CCcEEEEECCCCc-EEEEEecCCceeEEEeccCCCEEEEcccccCceeEeeccC
Q 021399          190 HKKTITSLAKAADGSHFLTGSL----DKSAKLWDARTLE-LIKTYVTERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHR  264 (313)
Q Consensus       190 h~~~v~~~~~s~~~~~l~s~s~----dg~i~iwd~~~~~-~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~  264 (313)
                      |......+.++|||++|+....    ++.|+++|++++. ....+..........++++++.+++....+.         
T Consensus       232 ~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l~~~~~~~~~~~~~~g~~l~~~t~~~~---------  302 (693)
T 3iuj_A          232 QHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAPLLTVQGDLDADVSLVDNKGSTLYLLTNRDA---------  302 (693)
T ss_dssp             GCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCCCEEEECSSSSCEEEEEEETTEEEEEECTTC---------
T ss_pred             CCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCceEEEeCCCCceEEEEeccCCEEEEEECCCC---------
Confidence            3445788999999998754432    3589999998763 3344433322222236777777766543321         


Q ss_pred             CCceeeeeeehhhhhh--hccccccccceeEEEECCCCCeeEEEEE
Q 021399          265 AGKFEAKFFDKILQEE--IGGVKGHFGPINALAFNPDGKRYGFLLL  308 (313)
Q Consensus       265 ~~~~~~~~~~~~~~~~--~~~~~~h~~~V~~~~fspdgk~~~~~~~  308 (313)
                       ..+.+..+|...+..  ...+..|...+.  .|+|+++.+++...
T Consensus       303 -~~~~l~~~d~~~~~~~~~~~l~~~~~~~~--~~s~~g~~lv~~~~  345 (693)
T 3iuj_A          303 -PNRRLVTVDAANPGPAHWRDLIPERQQVL--TVHSGSGYLFAEYM  345 (693)
T ss_dssp             -TTCEEEEEETTSCCGGGCEEEECCCSSCE--EEEEETTEEEEEEE
T ss_pred             -CCCEEEEEeCCCCCccccEEEecCCCCEE--EEEEECCEEEEEEE
Confidence             122333444332211  223445666665  89999999877654

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=98.96  E-value=1.1e-07  Score=80.88  Aligned_cols=218  Identities=10%  Similarity=-0.008  Sum_probs=129.0

Q ss_pred             cccccceeEEEEccCCCEEEEeeC-----CCCeEEEeCCCCcEEEEecCC------CCceEEEEECCC-CCeEEEee---
Q 021399            7 KGHERPLTYLKYNKDGDLLFSCAK-----DHTPTVWFADNGERLGTYRGH------NGAVWCCDVSRD-SMTLITGS---   71 (313)
Q Consensus         7 ~~h~~~v~~~~fs~~g~~l~s~s~-----d~~i~iw~~~~~~~~~~~~~H------~~~V~~~~~~~~-~~~l~s~s---   71 (313)
                      .+|...+..++|+++|+++++-..     +..|.+||.++++.+.++...      ...+..++++++ +..+++-.   
T Consensus        63 ~~~~~~p~gv~~d~~g~L~v~D~g~~~~~~~~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~  142 (343)
T 2qe8_A           63 IITFDTVLGIKSDGNGIVWMLDNGNQSKSVPKLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPD  142 (343)
T ss_dssp             CCCCSCEEEEEECSSSEEEEEECHHHHTSCCEEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSG
T ss_pred             ccceeEeeEEEEcCCCcEEEEcCCCCcCCCCeEEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccC
Confidence            346678999999999987665443     578999999999877766532      235678999975 45556655   


Q ss_pred             CCCcEEEEECCCCeEEEEecCCCC--eeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCce
Q 021399           72 ADQTAKLWNVETGAQLFTFNFDSP--ARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRI  149 (313)
Q Consensus        72 ~D~~v~vWd~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  149 (313)
                      .++.|.+||+.+++..........  .....+..++......                  ..   .+. ...   ....+
T Consensus       143 ~~~~i~v~d~~~g~~~r~~~~~~~~~~~~~~~~~~g~~~~~~------------------~~---~g~-~~~---~~~~~  197 (343)
T 2qe8_A          143 DKAALIRVDLQTGLAARVLQGYPGIAPEDIDLVIDGVPVQIG------------------QP---DGT-VIR---PHLGV  197 (343)
T ss_dssp             GGCEEEEEETTTCCEEEECTTCTTTSCCSCCCEETTEECBEE------------------CT---TSC-EEC---CCCCE
T ss_pred             CCCeEEEEECCCCCEEEEecCCCcccccccceeECCEEEEec------------------cC---CCc-eec---eeccc
Confidence            688999999988776544321100  0001111111110000                  00   000 000   01235


Q ss_pred             EEEEEccCCCEEEEeeCCC-eEEEEECC---CCce-----eeecccccCceeceEEEEECCCCCEEEEeeCCCcEEEEEC
Q 021399          150 NRAVWGPLNRTIISAGEDA-IVRIWDTE---TGKL-----LKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDA  220 (313)
Q Consensus       150 ~~~~~~~~~~~i~t~~~d~-~i~lwd~~---~~~~-----~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~dg~i~iwd~  220 (313)
                      +.++++|+++.+..+..++ .|..++..   .+..     ...+. ..++......++++++|..+++...++.|..||.
T Consensus       198 ~gia~s~dg~~ly~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~g~~g~pdgia~d~~G~l~va~~~~~~V~~~d~  276 (343)
T 2qe8_A          198 NGIVLDAENEWLYLSPMHSTSMYRIKSADLSNLQLTDAELGSKIE-RYSEKPICDGISIDKDHNIYVGDLAHSAIGVITS  276 (343)
T ss_dssp             EEEEECTTSCEEEEEESSCSEEEEEEHHHHTCTTCCHHHHHTTCE-EEEECCSCSCEEECTTCCEEEEEGGGTEEEEEET
T ss_pred             ceeEeccCCCEEEEEeCCCCeEEEEEHHHhcCCCCChhhhhcceE-ecccCCCCceEEECCCCCEEEEccCCCeEEEEEC
Confidence            7799999998887776555 55555431   1110     00000 0123335567899999999999989999999999


Q ss_pred             CCCcEEEEEec--CCceeEEEeccCCCEEEEc
Q 021399          221 RTLELIKTYVT--ERPVNAVTMSPLLDHVVLG  250 (313)
Q Consensus       221 ~~~~~~~~~~~--~~~~~~~~~~p~~~~~~~~  250 (313)
                      ++++.......  ......+++.+++...+++
T Consensus       277 ~~G~~~~~~~~~~~~~p~~va~~~~g~l~v~~  308 (343)
T 2qe8_A          277 ADRAYKLLVTDEKLSWTDSFNFGSDGYLYFDC  308 (343)
T ss_dssp             TTTEEEEEEECGGGSCEEEEEECTTSCEEEEE
T ss_pred             CCCCEEEEEECCceecCCeeEECCCCcEEEEe
Confidence            66654322222  2346788998876544443

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=98.96  E-value=6.2e-07  Score=74.93  Aligned_cols=226  Identities=12%  Similarity=0.061  Sum_probs=130.0

Q ss_pred             EEEecCCCCceEEEEECCCCC-eEEEeeCCCcEEEEECCCCeEEEEecCCCCeeEEEeecCCeEEEEECCCceeccccce
Q 021399           45 LGTYRGHNGAVWCCDVSRDSM-TLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIH  123 (313)
Q Consensus        45 ~~~~~~H~~~V~~~~~~~~~~-~l~s~s~D~~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  123 (313)
                      +..+..+........|+|+++ ++++...++.|..|+.. ++.............+.+.+++.+.++....-       .
T Consensus        37 ~~~l~~~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~~-g~~~~~~~~~~~~~gl~~d~dG~l~v~~~~~~-------~  108 (305)
T 3dr2_A           37 LLTLYDQATWSEGPAWWEAQRTLVWSDLVGRRVLGWRED-GTVDVLLDATAFTNGNAVDAQQRLVHCEHGRR-------A  108 (305)
T ss_dssp             CEEEECCCSSEEEEEEEGGGTEEEEEETTTTEEEEEETT-SCEEEEEESCSCEEEEEECTTSCEEEEETTTT-------E
T ss_pred             eEEEecCCcCccCCeEeCCCCEEEEEECCCCEEEEEeCC-CCEEEEeCCCCccceeeECCCCCEEEEECCCC-------E
Confidence            344444555677889999998 67777788999999984 44322222344566777877777665543210       0


Q ss_pred             eeeeeeCCCCCCCceEEE---ecC-CCCceEEEEEccCCCEEEE----eeC-------------CCeEEEEECCCCceee
Q 021399          124 VKRIARDPADQGGESVLI---LKG-PQGRINRAVWGPLNRTIIS----AGE-------------DAIVRIWDTETGKLLK  182 (313)
Q Consensus       124 ~~~~~~~~~~~~~~~~~~---~~~-~~~~i~~~~~~~~~~~i~t----~~~-------------d~~i~lwd~~~~~~~~  182 (313)
                      +..+  +. +  +.....   ..+ ....++.+.+.|+|+.+++    |..             .+.|..+|..+++...
T Consensus       109 v~~~--~~-~--g~~~~~~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~  183 (305)
T 3dr2_A          109 ITRS--DA-D--GQAHLLVGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQR  183 (305)
T ss_dssp             EEEE--CT-T--SCEEEEECEETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEE
T ss_pred             EEEE--CC-C--CCEEEEEeccCCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEE
Confidence            1000  00 0  111110   111 1234567889999998876    332             3568888886665322


Q ss_pred             ecccccCceeceEEEEECCCCCEEEEeeCC------CcEEEEECCCCcEE--EEEe--cCCceeEEEeccCCCEEEEccc
Q 021399          183 ESDKETGHKKTITSLAKAADGSHFLTGSLD------KSAKLWDARTLELI--KTYV--TERPVNAVTMSPLLDHVVLGGG  252 (313)
Q Consensus       183 ~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d------g~i~iwd~~~~~~~--~~~~--~~~~~~~~~~~p~~~~~~~~~~  252 (313)
                       +.    .......++|+||++.|+.+...      +.|..||+......  ..+.  .......+++.+++. +.++..
T Consensus       184 -~~----~~~~p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~~~pdgi~~d~~G~-lwv~~~  257 (305)
T 3dr2_A          184 -MA----DLDHPNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFASVPDGLPDGFCVDRGGW-LWSSSG  257 (305)
T ss_dssp             -EE----EESSEEEEEECTTSSEEEEEECCC---CCCEEEEEEEETTEEEEEEEEECCSSSCCCSEEECTTSC-EEECCS
T ss_pred             -Ee----cCCCCcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCCccCCeEEEECCCCCCCeEEECCCCC-EEEecC
Confidence             11    22356789999999987777665      68999998765411  1111  122345678888877 455442


Q ss_pred             ccCceeEeeccCCCceeeeeeehhhhhhhccccccccceeEEEECCCCCeeEEE
Q 021399          253 QDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKRYGFL  306 (313)
Q Consensus       253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~fspdgk~~~~~  306 (313)
                       ++  +..++..             ++.+..+... ..+..++|+||++.+-+.
T Consensus       258 -~g--v~~~~~~-------------g~~~~~~~~~-~~~~~~~f~~d~~~L~it  294 (305)
T 3dr2_A          258 -TG--VCVFDSD-------------GQLLGHIPTP-GTASNCTFDQAQQRLFIT  294 (305)
T ss_dssp             -SE--EEEECTT-------------SCEEEEEECS-SCCCEEEECTTSCEEEEE
T ss_pred             -Cc--EEEECCC-------------CCEEEEEECC-CceeEEEEeCCCCEEEEE
Confidence             21  4444432             1222222222 258899999999876543

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=98.88  E-value=1.1e-06  Score=76.58  Aligned_cols=204  Identities=10%  Similarity=0.077  Sum_probs=119.7

Q ss_pred             EEEccCCCEEEEeeCCC--CeEEEeCCCCcEEEEe---cC-CCCceEEEEECCCCCeEEEeeCCCcEEEEECCCCeEEEE
Q 021399           16 LKYNKDGDLLFSCAKDH--TPTVWFADNGERLGTY---RG-HNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFT   89 (313)
Q Consensus        16 ~~fs~~g~~l~s~s~d~--~i~iw~~~~~~~~~~~---~~-H~~~V~~~~~~~~~~~l~s~s~D~~v~vWd~~~~~~~~~   89 (313)
                      ++|+++++.|+.+..++  .|.+++...+.....+   .. +...+.+++++|++..|+.+..++.|+.||+.++.....
T Consensus       176 ia~~~~g~~l~~~d~~~~~~I~~~d~~~~~~~~~~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~~~  255 (409)
T 3hrp_A          176 PAVTKDKQRVYSIGWEGTHTVYVYMKASGWAPTRIGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVTLI  255 (409)
T ss_dssp             CEECTTSSEEEEEBSSTTCEEEEEEGGGTTCEEEEEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEEEE
T ss_pred             eeEecCCCcEEEEecCCCceEEEEEcCCCceeEEeeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEEEE
Confidence            89999999999888766  6778887665543333   22 456678899999444444467789999999987764332


Q ss_pred             ----ecCC-CC-ee-EEEeec-CCeEEEEECCC--ceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEccCCC
Q 021399           90 ----FNFD-SP-AR-SVDFAV-GDKLAVITTDP--FMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNR  159 (313)
Q Consensus        90 ----~~~~-~~-~~-~~~~~~-~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~  159 (313)
                          .... .. .. .+.+.+ +..+.+.....  ...+........+...........-............++++|+++
T Consensus       256 ~~~~~~g~~~~~P~~~ia~~p~~g~lyv~d~~~~~I~~~~~~g~~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~  335 (409)
T 3hrp_A          256 KQLELSGSLGTNPGPYLIYYFVDSNFYMSDQNLSSVYKITPDGECEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGN  335 (409)
T ss_dssp             EECCCCSCCCCSSCCEEEEETTTTEEEEEETTTTEEEEECTTCCEEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCC
T ss_pred             ecccccCCCCCCccccEEEeCCCCEEEEEeCCCCEEEEEecCCCEEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCC
Confidence                1111 11 12 788888 45555543321  111111000000000000000000000000023467899999999


Q ss_pred             EEEEee-CCCeEEEEECCCCceeeecccc---cC---------ceeceEEEEECCCCCEEEEeeCCCcEEEEEC
Q 021399          160 TIISAG-EDAIVRIWDTETGKLLKESDKE---TG---------HKKTITSLAKAADGSHFLTGSLDKSAKLWDA  220 (313)
Q Consensus       160 ~i~t~~-~d~~i~lwd~~~~~~~~~~~~~---~~---------h~~~v~~~~~s~~~~~l~s~s~dg~i~iwd~  220 (313)
                      .+++-. .++.|+.||+.++.. ..+...   .+         .-.....++++++|..+++-..++.|+.+++
T Consensus       336 lyvad~~~~~~I~~~~~~~G~v-~~~~g~~~~~g~~~g~~~~~~~~~P~giavd~~g~lyVad~~n~~Ir~i~~  408 (409)
T 3hrp_A          336 FYIVDGFKGYCLRKLDILDGYV-STVAGQVDVASQIDGTPLEATFNYPYDICYDGEGGYWIAEAWGKAIRKYAV  408 (409)
T ss_dssp             EEEEETTTTCEEEEEETTTTEE-EEEEECTTCBSCCCBSTTTCCBSSEEEEEECSSSEEEEEESTTCEEEEEEE
T ss_pred             EEEEeCCCCCEEEEEECCCCEE-EEEeCCCCCCCcCCCChhceEeCCceEEEEcCCCCEEEEECCCCeEEEEEe
Confidence            777777 889999999777653 222211   00         1245889999999888888888888887765

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=98.75  E-value=1.1e-06  Score=81.92  Aligned_cols=216  Identities=15%  Similarity=0.121  Sum_probs=121.0

Q ss_pred             eEEEEccCCCEEEEeeCCCC-------------------eEEEeCCCCcEEEEecC--CC-------CceEEEEECCCCC
Q 021399           14 TYLKYNKDGDLLFSCAKDHT-------------------PTVWFADNGERLGTYRG--HN-------GAVWCCDVSRDSM   65 (313)
Q Consensus        14 ~~~~fs~~g~~l~s~s~d~~-------------------i~iw~~~~~~~~~~~~~--H~-------~~V~~~~~~~~~~   65 (313)
                      ...+|+|++.+++.++.++.                   |..+|.++|+.+..++.  |.       .+........+|+
T Consensus       238 ~~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG~~~W~~~~~~~d~wd~~~~~~~~l~d~~~~G~  317 (689)
T 1yiq_A          238 DSFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADTGEYVWHYQTTPGDAWDYTATQHMILAELPIDGK  317 (689)
T ss_dssp             SCEEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTE
T ss_pred             cceeEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEccCCceeEeeecCCcccccccCCCCcEEEeeccCCc
Confidence            36789999999999988763                   89999999999988764  32       1222223333564


Q ss_pred             ---eEEEeeCCCcEEEEECCCCeEEEEecCCCCeeEEEeecC-CeEEEEECCCceeccccceeeeeeeCCCCCCCceEEE
Q 021399           66 ---TLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVG-DKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLI  141 (313)
Q Consensus        66 ---~l~s~s~D~~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  141 (313)
                         .++.++.+|.++++|.++++.+....+....-...+... ..-+.  ..       .... .   .   ........
T Consensus       318 ~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~~~~~~~pi~--~~-------~~~~-~---~---~~~~~~~~  381 (689)
T 1yiq_A          318 PRKVLMQAPKNGFFYVIDRATGELLSAKGIVPQSWTKGMDMKTGRPIL--DE-------ENAA-Y---W---KNGKRNLV  381 (689)
T ss_dssp             EEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEEETTTTEEEE--CH-------HHHC-T---T---TSSSCEEE
T ss_pred             EEEEEEEECCCCeEEEEECCCCCEeccccccccccccccCccCCCccc--ch-------hhcc-c---c---CCCCeeEe
Confidence               788999999999999999998865543221000000000 00000  00       0000 0   0   00000000


Q ss_pred             ecCCCCc--eEEEEEccCCCEEEEee---------------------------------------------CCCeEEEEE
Q 021399          142 LKGPQGR--INRAVWGPLNRTIISAG---------------------------------------------EDAIVRIWD  174 (313)
Q Consensus       142 ~~~~~~~--i~~~~~~~~~~~i~t~~---------------------------------------------~d~~i~lwd  174 (313)
                      ..+..+.  -..++++|....+.+..                                             .++.|+.||
T Consensus       382 ~p~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~g~l~A~D  461 (689)
T 1yiq_A          382 TPAFWGAHDWQPMSYNPDTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTGMMPEGAEGLLEMAKSWSGKLIAWD  461 (689)
T ss_dssp             SSCTTCSSCSSCCEEETTTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEECCCCSSHHHHHHHHTTCEEEEEEEE
T ss_pred             CCCcccccCCCcceECCCCCEEEEeccccceeeeeccccccccccccccccCccccccCcccccCCCCCCCcceeEEEEE
Confidence            0000000  00122222222222210                                             148899999


Q ss_pred             CCCCceeeecccccCceeceEEEEECCCCCEEEEeeCCCcEEEEECCCCcEEEEEecCCce--eEEEeccCCCEEEE
Q 021399          175 TETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTERPV--NAVTMSPLLDHVVL  249 (313)
Q Consensus       175 ~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~--~~~~~~p~~~~~~~  249 (313)
                      +.+++.+=+...    ......-.+...+..++.++.||.++.||.++++.+.++.....+  .-+.+..++.+.++
T Consensus       462 ~~tG~~~W~~~~----~~~~~~g~~~tagglvf~gt~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~ty~~~G~qyv~  534 (689)
T 1yiq_A          462 PVKQQAAWEVPY----VTIFNGGTLSTAGNLVFEGSADGRVIAYAADTGEKLWEQPAASGVMAAPVTYSVDGEQYVT  534 (689)
T ss_dssp             TTTTEEEEEEEE----SSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEE
T ss_pred             CCCCCeEeEccC----CCCccCccceECCCEEEEECCCCcEEEEECCCCccceeeeCCCCcccCceEEEECCEEEEE
Confidence            999986544321    112222244456778999999999999999999999888654332  34666677765544

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=98.74  E-value=1.8e-09  Score=93.16  Aligned_cols=163  Identities=13%  Similarity=0.058  Sum_probs=87.8

Q ss_pred             ceeEEEEccCCCEEEEeeCCCCeEEEeCCCCcEEEEecCCCCc-eE-EEEECCCCCeEEEeeCCCcEEEEECCCCeEEEE
Q 021399           12 PLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGA-VW-CCDVSRDSMTLITGSADQTAKLWNVETGAQLFT   89 (313)
Q Consensus        12 ~v~~~~fs~~g~~l~s~s~d~~i~iw~~~~~~~~~~~~~H~~~-V~-~~~~~~~~~~l~s~s~D~~v~vWd~~~~~~~~~   89 (313)
                      .+.+..+..++..+++++.|+.++.||.++++.+..++.+... +. +..+. ++..+++++.|+.++.||..+++.++.
T Consensus        39 ~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~~~~~~sp~~~-~~~~v~~g~~dg~v~a~D~~tG~~~w~  117 (369)
T 2hz6_A           39 PVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEGLTKLPFTIPELVQASPCRS-SDGILYMGKKQDIWYVIDLLTGEKQQT  117 (369)
T ss_dssp             CSCCCC-----CCEEECTTTCCEEEC-----CCSEECSCCHHHHHTTCSCC------CCCCEEEEEEEEECCC-------
T ss_pred             CceecceEcCCCEEEEeCCCCEEEEEECCCCceeeeeeccCccccccCceEe-cCCEEEEEeCCCEEEEEECCCCcEEEE
Confidence            3444445567888888899999999999999887666544221 11 01111 345678889999999999999887654


Q ss_pred             ecCCCCeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEccCCCEEEEeeCCCe
Q 021399           90 FNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAI  169 (313)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~t~~~d~~  169 (313)
                      +....                                                        ....+|.+..+++++.|+.
T Consensus       118 ~~~~~--------------------------------------------------------~~~~~p~~~~v~~~~~dg~  141 (369)
T 2hz6_A          118 LSSAF--------------------------------------------------------ADSLSPSTSLLYLGRTEYT  141 (369)
T ss_dssp             -----------------------------------------------------------------------EEEEEEEEE
T ss_pred             ecCCC--------------------------------------------------------cccccccCCEEEEEecCCE
Confidence            32110                                                        0011234566788888999


Q ss_pred             EEEEECCCCceeeecccccCceeceEEEEECCCC---CEEEEeeCCCcEEEEECCCCcEEEEEecCCcee
Q 021399          170 VRIWDTETGKLLKESDKETGHKKTITSLAKAADG---SHFLTGSLDKSAKLWDARTLELIKTYVTERPVN  236 (313)
Q Consensus       170 i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~---~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~  236 (313)
                      |+.||..+++.+-++..   +  .....++..+.   ..++.++.||.++.||.++++.+-+.....++.
T Consensus       142 v~a~d~~tG~~~W~~~~---~--~~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~~~W~~~~~~pv~  206 (369)
T 2hz6_A          142 ITMYDTKTRELRWNATY---F--DYAASLPEDDVDYKMSHFVSNGDGLVVTVDSESGDVLWIQNYASPVV  206 (369)
T ss_dssp             EECCCSSSSSCCCEEEE---E--EECCBCCCCCTTCCCCEEEEETSCEEEEECTTTCCEEEEEECSSCEE
T ss_pred             EEEEECCCCCEEEeEec---c--cccCccccCCccccceEEEECCCCEEEEEECCCCcEEEEecCCCceE
Confidence            99999998876433221   1  11222333322   457788999999999999999887776555543

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=98.71  E-value=3.8e-06  Score=68.27  Aligned_cols=202  Identities=14%  Similarity=0.036  Sum_probs=118.2

Q ss_pred             EEEEecCCCC--ceEEEEECCCCCeEEEeeC--CCcEEEEECCCCeEEEEecCCCCeeEEEeecCCeEEEEECCCceecc
Q 021399           44 RLGTYRGHNG--AVWCCDVSRDSMTLITGSA--DQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELN  119 (313)
Q Consensus        44 ~~~~~~~H~~--~V~~~~~~~~~~~l~s~s~--D~~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  119 (313)
                      .+.++. |..  ....++|++++.++++.+.  ++.|.+.|+.+++.+..........                      
T Consensus        11 vv~~~p-~~~~~f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~f----------------------   67 (266)
T 2iwa_A           11 VLNEFP-HDPYAFTQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYF----------------------   67 (266)
T ss_dssp             EEEEEE-CCTTCCEEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCC----------------------
T ss_pred             EEEEEE-CCCCCCcccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcc----------------------
Confidence            445553 443  3678999998877776664  6899999999988765443211000                      


Q ss_pred             ccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEccCCCEEEEeeCCCeEEEEECCCCceeeecccccCceeceEEEEE
Q 021399          120 SAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAK  199 (313)
Q Consensus       120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~t~~~d~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~  199 (313)
                                                   ...+.+. .++.+++...++.+.++|..+.+.+.++....+   .-..+  
T Consensus        68 -----------------------------geGi~~~-g~~lyv~t~~~~~v~viD~~t~~v~~~i~~g~~---~g~gl--  112 (266)
T 2iwa_A           68 -----------------------------GEGLTLL-NEKLYQVVWLKNIGFIYDRRTLSNIKNFTHQMK---DGWGL--  112 (266)
T ss_dssp             -----------------------------EEEEEEE-TTEEEEEETTCSEEEEEETTTTEEEEEEECCSS---SCCEE--
T ss_pred             -----------------------------eEEEEEe-CCEEEEEEecCCEEEEEECCCCcEEEEEECCCC---CeEEE--
Confidence                                         0011111 123445566789999999999888877643211   22333  


Q ss_pred             CCCCCEEEEeeCCCcEEEEECCCCcEEEEEecC---C---ceeEEEeccCCCEEEEcccccCceeEeeccCCCceeeeee
Q 021399          200 AADGSHFLTGSLDKSAKLWDARTLELIKTYVTE---R---PVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFF  273 (313)
Q Consensus       200 s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~---~---~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  273 (313)
                      ++||+.++.+..+++|.++|.++.+.+..+...   .   ..+.++|. ++ .+++.... ...+..-|...++...+ +
T Consensus       113 t~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~-dg-~lyvn~~~-~~~V~vID~~tg~V~~~-I  188 (266)
T 2iwa_A          113 ATDGKILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYI-NG-EVWANIWQ-TDCIARISAKDGTLLGW-I  188 (266)
T ss_dssp             EECSSSEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TT-EEEEEETT-SSEEEEEETTTCCEEEE-E
T ss_pred             EECCCEEEEECCCCeEEEEECCCCcEEEEEEECCCCcccccceeEEEE-CC-EEEEecCC-CCeEEEEECCCCcEEEE-E
Confidence            456776666667889999999999988887632   2   35677777 43 56655432 33455556655554322 2


Q ss_pred             ehhhhhhh--ccccccccceeEEEECCCCCeeEEEEE
Q 021399          274 DKILQEEI--GGVKGHFGPINALAFNPDGKRYGFLLL  308 (313)
Q Consensus       274 ~~~~~~~~--~~~~~h~~~V~~~~fspdgk~~~~~~~  308 (313)
                      +......-  ..-..-....+.|+|+|++++ .|+..
T Consensus       189 ~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~-lfVTg  224 (266)
T 2iwa_A          189 LLPNLRKKLIDEGFRDIDVLNGIAWDQENKR-IFVTG  224 (266)
T ss_dssp             ECHHHHHHHHHTTCTTCCCEEEEEEETTTTE-EEEEE
T ss_pred             ECCCcccccccccccccCceEEEEEcCCCCE-EEEEC
Confidence            32110000  000000135589999999987 34443

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=98.71  E-value=3.6e-06  Score=78.27  Aligned_cols=205  Identities=13%  Similarity=0.093  Sum_probs=115.9

Q ss_pred             CCEEEEeeCCCCeEEEeCCCCcEEEEecCCCCc----------e-EEEEECCCCCeEEEeeCCCcEEEEECCCCeEEEEe
Q 021399           22 GDLLFSCAKDHTPTVWFADNGERLGTYRGHNGA----------V-WCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTF   90 (313)
Q Consensus        22 g~~l~s~s~d~~i~iw~~~~~~~~~~~~~H~~~----------V-~~~~~~~~~~~l~s~s~D~~v~vWd~~~~~~~~~~   90 (313)
                      +..|+.++.++.|.-+|.++|+.+.+++.....          + ..+++  ++..++.++.|+.+..+|..+++.++..
T Consensus        77 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~a~--~~~~v~v~~~dg~l~alD~~tG~~~W~~  154 (677)
T 1kb0_A           77 DGIMYVSASWSVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNRGVAL--WKGKVYVGAWDGRLIALDAATGKEVWHQ  154 (677)
T ss_dssp             TTEEEEECGGGCEEEEETTTTEEEEEECCCCCGGGGGGSSSCSCCCCCEE--ETTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred             CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCccccccccccCCCCCceE--ECCEEEEEcCCCEEEEEECCCCCEEeee
Confidence            556777888899999999999999888654321          1 12233  3557788889999999999999999887


Q ss_pred             cCC-C-----CeeEEEeecCCeEEEEECCC------ce-ecc--ccceeeeeeeCCCCCC------------------Cc
Q 021399           91 NFD-S-----PARSVDFAVGDKLAVITTDP------FM-ELN--SAIHVKRIARDPADQG------------------GE  137 (313)
Q Consensus        91 ~~~-~-----~~~~~~~~~~~~~~~~~~~~------~~-~~~--~~~~~~~~~~~~~~~~------------------~~  137 (313)
                      ... .     .....-...++.+++.....      .+ .++  .....|..........                  ++
T Consensus       155 ~~~~~~~~~~~~~~~p~v~~~~v~v~~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~~~~~~~g~~~w~~~g~  234 (677)
T 1kb0_A          155 NTFEGQKGSLTITGAPRVFKGKVIIGNGGAEYGVRGYITAYDAETGERKWRWFSVPGDPSKPFEDESMKRAARTWDPSGK  234 (677)
T ss_dssp             ETTTTCCSSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTSCGGGC
T ss_pred             cCCcCcCcCcccccCcEEECCEEEEEecccccCCCCEEEEEECCCCcEEEEeccCCCCccccccccccccccccccccCc
Confidence            643 1     11100011244444433211      00 011  1111122111100000                  00


Q ss_pred             eEEEecCCCCceEEEEEccCCCEEEEeeCCC-------------------eEEEEECCCCceeeecccccCce-------
Q 021399          138 SVLILKGPQGRINRAVWGPLNRTIISAGEDA-------------------IVRIWDTETGKLLKESDKETGHK-------  191 (313)
Q Consensus       138 ~~~~~~~~~~~i~~~~~~~~~~~i~t~~~d~-------------------~i~lwd~~~~~~~~~~~~~~~h~-------  191 (313)
                      . ....+.......+.++|.+..+..+..++                   .|..+|..+++.+=.+.. ..|.       
T Consensus       235 ~-~~~~~g~~~w~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~TG~~~W~~~~-~~~d~wd~~~~  312 (677)
T 1kb0_A          235 W-WEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQE-TPGDNWDYTST  312 (677)
T ss_dssp             H-HHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEES-STTCCSCCCCC
T ss_pred             e-eEeCCCcccccceeEcCCCCEEEEECCCCccccCCCCCccCCCCeeeEEEEEEECCCCCEEEEEec-CCCcccccccC
Confidence            0 00000001112456777777777776554                   599999999987543321 1121       


Q ss_pred             eceEEEEECCCC---CEEEEeeCCCcEEEEECCCCcEEEEEe
Q 021399          192 KTITSLAKAADG---SHFLTGSLDKSAKLWDARTLELIKTYV  230 (313)
Q Consensus       192 ~~v~~~~~s~~~---~~l~s~s~dg~i~iwd~~~~~~~~~~~  230 (313)
                      ....-+....+|   ..++.++.+|.++++|.++++.+..+.
T Consensus       313 ~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG~~l~~~~  354 (677)
T 1kb0_A          313 QPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKFISAKN  354 (677)
T ss_dssp             SCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEE
T ss_pred             CCcEEEecccCCcEeeEEEEECCCCEEEEEECCCCCEecccc
Confidence            112222333467   689999999999999999999987664

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=98.70  E-value=3.4e-06  Score=73.19  Aligned_cols=187  Identities=12%  Similarity=0.105  Sum_probs=116.7

Q ss_pred             eeEEEEccCCCEEEEeeCC------CCeEEEeCCCCcEEEEecCCCCc---eEEEEECCCCCeEEEee------------
Q 021399           13 LTYLKYNKDGDLLFSCAKD------HTPTVWFADNGERLGTYRGHNGA---VWCCDVSRDSMTLITGS------------   71 (313)
Q Consensus        13 v~~~~fs~~g~~l~s~s~d------~~i~iw~~~~~~~~~~~~~H~~~---V~~~~~~~~~~~l~s~s------------   71 (313)
                      ...+..+|+| .++++..+      +.+.+.|.++.+.+.++.--.++   -..+.|+|+++.++|..            
T Consensus       140 Ph~~~~~pdG-i~Vs~~g~~~g~~~g~v~vlD~~T~~v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~  218 (462)
T 2ece_A          140 LHTVHCGPDA-IYISALGNEEGEGPGGILMLDHYSFEPLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLK  218 (462)
T ss_dssp             EEEEEECSSC-EEEEEEEETTSCSCCEEEEECTTTCCEEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCC
T ss_pred             ccceeECCCe-EEEEcCCCcCCCCCCeEEEEECCCCeEEEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccc
Confidence            4567788999 88887666      78999999999999888632221   23477899999888874            


Q ss_pred             -------CCCcEEEEECCCCeEEEEecCCC---CeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEE
Q 021399           72 -------ADQTAKLWNVETGAQLFTFNFDS---PARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLI  141 (313)
Q Consensus        72 -------~D~~v~vWd~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  141 (313)
                             .+.+|.+||+.+++.+.++....   ....+.|                                        
T Consensus       219 ~~~~~~~~~d~V~v~D~~~~k~~~tI~vg~~g~~P~~i~f----------------------------------------  258 (462)
T 2ece_A          219 LEHLKDRYGNRIHFWDLRKRKRIHSLTLGEENRMALELRP----------------------------------------  258 (462)
T ss_dssp             TTTHHHHSCCEEEEEETTTTEEEEEEESCTTEEEEEEEEE----------------------------------------
T ss_pred             hhhhhhccCCEEEEEECCCCcEeeEEecCCCCCccceeEe----------------------------------------
Confidence                   37899999999887666554321   1111112                                        


Q ss_pred             ecCCCCceEEEEEccCCCEEEEee------CCCeEEEEECCCCce--eeec-------c-------cccC-ceeceEEEE
Q 021399          142 LKGPQGRINRAVWGPLNRTIISAG------EDAIVRIWDTETGKL--LKES-------D-------KETG-HKKTITSLA  198 (313)
Q Consensus       142 ~~~~~~~i~~~~~~~~~~~i~t~~------~d~~i~lwd~~~~~~--~~~~-------~-------~~~~-h~~~v~~~~  198 (313)
                                 .++|++++..++.      .++.|.+|....++.  .+.+       .       ...+ -......+.
T Consensus       259 -----------~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~  327 (462)
T 2ece_A          259 -----------LHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDID  327 (462)
T ss_dssp             -----------CSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEECCCCCCEE
T ss_pred             -----------eECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCccccccccccccccccCCCceeEEE
Confidence                       1244443333222      233444333222110  0000       0       0000 023577899


Q ss_pred             ECCCCCEEEEeeC-CCcEEEEECC---CCcEEEEEecCC---------------ceeEEEeccCCCEEEEcc
Q 021399          199 KAADGSHFLTGSL-DKSAKLWDAR---TLELIKTYVTER---------------PVNAVTMSPLLDHVVLGG  251 (313)
Q Consensus       199 ~s~~~~~l~s~s~-dg~i~iwd~~---~~~~~~~~~~~~---------------~~~~~~~~p~~~~~~~~~  251 (313)
                      +|+||++|..+.. .+.|.++|+.   +.+.+..+....               ....++++|++..++++.
T Consensus       328 lS~DGrfLYVSnrg~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~lSpDGk~LyVaN  399 (462)
T 2ece_A          328 ISLDDKFLYLSLWGIGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGHKLTGAPQMLEISRDGRRVYVTN  399 (462)
T ss_dssp             ECTTSCEEEEEETTTTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSCCCCSCCCCEEECTTSSEEEEEC
T ss_pred             ECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEEEEeCCeeccccccccccCCCCCCEEEEcCCCCEEEEEc
Confidence            9999999888775 6889999985   245555554331               247899999999998875

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=98.69  E-value=4.6e-07  Score=81.24  Aligned_cols=256  Identities=10%  Similarity=-0.018  Sum_probs=149.4

Q ss_pred             cCCCEEEEeeC-CCCeEEEeCCCCcEEEEecC-CCCceEEEEE-C-CCCCeEEEee------------------CCCcEE
Q 021399           20 KDGDLLFSCAK-DHTPTVWFADNGERLGTYRG-HNGAVWCCDV-S-RDSMTLITGS------------------ADQTAK   77 (313)
Q Consensus        20 ~~g~~l~s~s~-d~~i~iw~~~~~~~~~~~~~-H~~~V~~~~~-~-~~~~~l~s~s------------------~D~~v~   77 (313)
                      +||++|+.... +.+|.+-|+++.++.+.++- -......+++ + |++++++.++                  .++.+-
T Consensus        99 ~DG~~lfVnd~~~~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~vt  178 (595)
T 1fwx_A           99 YDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFT  178 (595)
T ss_dssp             EEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEEEE
T ss_pred             cCCCEEEEEcCCCCEEEEEECCCceEeeEEeCCCCCCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCceEE
Confidence            48888887765 45689999999998774432 1234677887 5 8888887774                  346799


Q ss_pred             EEECCCCeEEEEecCCCCeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEccC
Q 021399           78 LWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPL  157 (313)
Q Consensus        78 vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~  157 (313)
                      +.|.++.+....+........+.++++++.+.+++.........      .. ........+.++.....    ..+.++
T Consensus       179 vID~~t~~v~~qI~Vgg~pd~~~~spdGk~~~vt~~~se~~~~i------~~-~~~~~~d~v~V~~~~~~----~~~v~~  247 (595)
T 1fwx_A          179 AVDADKWEVAWQVLVSGNLDNCDADYEGKWAFSTSYNSEKGMTL------PE-MTAAEMDHIVVFNIAEI----EKAIAA  247 (595)
T ss_dssp             EEETTTTEEEEEEEESSCCCCEEECSSSSEEEEEESCTTCCSSH------HH-HTCCSEEEEEEEEHHHH----HHHHHH
T ss_pred             EEECCCCeEEEEEEeCCCccceEECCCCCEEEEEecCcccCcch------hh-ccccccceEEEeeccce----eEeccC
Confidence            99999998887776544455667788777776654321100000      00 00000011111110000    001233


Q ss_pred             CCEEEEeeCCCeEEEEECCC--Cce-eeecccccCceeceEEEEECCCCCEEEEee-CCCcEEEEECCCCc---------
Q 021399          158 NRTIISAGEDAIVRIWDTET--GKL-LKESDKETGHKKTITSLAKAADGSHFLTGS-LDKSAKLWDARTLE---------  224 (313)
Q Consensus       158 ~~~i~t~~~d~~i~lwd~~~--~~~-~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s-~dg~i~iwd~~~~~---------  224 (313)
                      |++...    +.|.+.|..+  ++. +..+.    -.....++.++|||++++.++ .+.+|.++|+++.+         
T Consensus       248 Gk~~~i----~~V~VID~~~~~~~~~~~~Ip----vg~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~  319 (595)
T 1fwx_A          248 GDYQEL----NGVKVVDGRKEASSLFTRYIP----IANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADP  319 (595)
T ss_dssp             TCSEEE----TTEEEEECSGGGCCSSEEEEE----EESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCG
T ss_pred             CCeeEE----CcEEEEeCcccCCceeEEEEe----cCCCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCc
Confidence            443322    4499999987  443 33332    234567889999999876665 58899999999763         


Q ss_pred             ---EEEEEecCCceeEEEeccCCCEEEEcccccCceeEeeccCCCceeeeeeehhhh----------hhhcc----cc-c
Q 021399          225 ---LIKTYVTERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQ----------EEIGG----VK-G  286 (313)
Q Consensus       225 ---~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~----~~-~  286 (313)
                         .+.++.......-++|+|+| .++++---+ +.+..            ||....          +.+.+    .+ +
T Consensus       320 ~~~v~~~v~vG~gP~h~aF~~dG-~aY~t~~ld-sqV~k------------wdi~~a~~~~~g~~~~~vi~kidV~yqpG  385 (595)
T 1fwx_A          320 RSAVVAEPELGLGPLHTAFDGRG-NAYTSLFLD-SQVVK------------WNIEDAIRAYAGEKVDPIKDKLDVHYQPG  385 (595)
T ss_dssp             GGGEEECCBCCSCEEEEEECTTS-EEEEEETTT-TEEEE------------EEHHHHHHHHHTCSCCCEEEEEECSSCEE
T ss_pred             ccceEEEcCCCCCcceEEECCCC-eEEEEEecC-CcEEE------------EEhhHhhhhhcccccceeEEEeecccccc
Confidence               34444444557788999999 666553222 22333            443321          11111    12 4


Q ss_pred             cccceeEEEECCCCCeeEEEEEE
Q 021399          287 HFGPINALAFNPDGKRYGFLLLQ  309 (313)
Q Consensus       287 h~~~V~~~~fspdgk~~~~~~~~  309 (313)
                      |...-..+.++||||++ |.++|
T Consensus       386 h~~~~~g~t~~~DGk~l-~~~Nk  407 (595)
T 1fwx_A          386 HLKTVMGETLDATNDWL-VCLSK  407 (595)
T ss_dssp             EEEETTTTSTTCCSSEE-EEEES
T ss_pred             cceeccceEeCCCCCEE-EEcCC
Confidence            54444566789999997 44443

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=98.64  E-value=4.3e-06  Score=67.30  Aligned_cols=196  Identities=12%  Similarity=0.152  Sum_probs=116.7

Q ss_pred             EEEEecCCC--CceEEEEECCCCCeEEEeeCCC--cEEEEECCCCeEEEEecCCCCeeEEEeecCCeEEEEECCCceecc
Q 021399           44 RLGTYRGHN--GAVWCCDVSRDSMTLITGSADQ--TAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELN  119 (313)
Q Consensus        44 ~~~~~~~H~--~~V~~~~~~~~~~~l~s~s~D~--~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  119 (313)
                      .+.++ -|.  .....+.|+ ++.++.+.|.+|  .|++.|+.+++.+.........          +            
T Consensus        33 vv~~~-phd~~~ftqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~~~----------F------------   88 (262)
T 3nol_A           33 IVHSY-PHDTKAFTEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQIELGKRY----------F------------   88 (262)
T ss_dssp             EEEEE-ECCTTCEEEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCEEEEEECCTTC----------C------------
T ss_pred             EEEEe-cCCCCcccceEEEE-CCEEEEECCCCCCceEEEEECCCCcEEEEEecCCcc----------c------------
Confidence            44555 344  345788998 678888888876  8999999999876554321100          0            


Q ss_pred             ccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEccCCCEEEEeeCCCeEEEEECCCCceeeecccccCceeceEEEEE
Q 021399          120 SAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAK  199 (313)
Q Consensus       120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~t~~~d~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~  199 (313)
                                      ++             .+... .++.++....++.+.++|..+.+.+.++... +   .-..++ 
T Consensus        89 ----------------ge-------------Git~~-g~~ly~ltw~~~~v~v~D~~t~~~~~ti~~~-~---eG~glt-  133 (262)
T 3nol_A           89 ----------------GE-------------GISDW-KDKIVGLTWKNGLGFVWNIRNLRQVRSFNYD-G---EGWGLT-  133 (262)
T ss_dssp             ----------------EE-------------EEEEE-TTEEEEEESSSSEEEEEETTTCCEEEEEECS-S---CCCCEE-
T ss_pred             ----------------ee-------------EEEEe-CCEEEEEEeeCCEEEEEECccCcEEEEEECC-C---CceEEe-
Confidence                            00             00000 1123444556889999999999988877542 2   113333 


Q ss_pred             CCCCCEEEEeeCCCcEEEEECCCCcEEEEEec---CC---ceeEEEeccCCCEEEEcccccCceeEeeccCCCceeeeee
Q 021399          200 AADGSHFLTGSLDKSAKLWDARTLELIKTYVT---ER---PVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFF  273 (313)
Q Consensus       200 s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~---~~---~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  273 (313)
                       +|+..|+.+..+++|.++|.++.+.+.++..   ..   .++.+++. + ..+++..-. ...+..-|...++...+ +
T Consensus       134 -~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~-~-G~lyan~w~-~~~I~vIDp~tG~V~~~-I  208 (262)
T 3nol_A          134 -HNDQYLIMSDGTPVLRFLDPESLTPVRTITVTAHGEELPELNELEWV-D-GEIFANVWQ-TNKIVRIDPETGKVTGI-I  208 (262)
T ss_dssp             -ECSSCEEECCSSSEEEEECTTTCSEEEEEECEETTEECCCEEEEEEE-T-TEEEEEETT-SSEEEEECTTTCBEEEE-E
T ss_pred             -cCCCEEEEECCCCeEEEEcCCCCeEEEEEEeccCCccccccceeEEE-C-CEEEEEEcc-CCeEEEEECCCCcEEEE-E
Confidence             4566666666678899999999999888753   22   24567765 3 456655432 33566667766665333 2


Q ss_pred             ehhhhhhhcc-ccccccceeEEEECCCCCee
Q 021399          274 DKILQEEIGG-VKGHFGPINALAFNPDGKRY  303 (313)
Q Consensus       274 ~~~~~~~~~~-~~~h~~~V~~~~fspdgk~~  303 (313)
                      |......-.. ...-...-+.|||+|++++|
T Consensus       209 d~~~L~~~~~~~~~~~~vlNGIA~dp~~~~l  239 (262)
T 3nol_A          209 DLNGILAEAGPLPSPIDVLNGIAWDKEHHRL  239 (262)
T ss_dssp             ECTTGGGGSCSCCSSCCCEEEEEEETTTTEE
T ss_pred             ECCcCccccccccCcCCceEEEEEcCCCCEE
Confidence            3221111000 00112355999999998874

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=98.63  E-value=8.9e-05  Score=60.35  Aligned_cols=220  Identities=9%  Similarity=0.027  Sum_probs=125.7

Q ss_pred             cceeEEEEccCCCEEEEe-eCCCCeEEEeCCCCcEEEEecCCCCceEEEEECCCCC-eEEEeeCCCcEEEEECCCCeEEE
Q 021399           11 RPLTYLKYNKDGDLLFSC-AKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSM-TLITGSADQTAKLWNVETGAQLF   88 (313)
Q Consensus        11 ~~v~~~~fs~~g~~l~s~-s~d~~i~iw~~~~~~~~~~~~~H~~~V~~~~~~~~~~-~l~s~s~D~~v~vWd~~~~~~~~   88 (313)
                      ..+..++|++++..|+.+ ..++.|.+++.+.......+...-.....+++++++. ++++-...+.|.+++++......
T Consensus        36 ~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~  115 (267)
T 1npe_A           36 KVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRV  115 (267)
T ss_dssp             EEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEE
T ss_pred             CcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEEEEECCCCCccEEEEEecCCeEEEEECCCCEEEEEEcCCCCEEE
Confidence            456789999976655554 4568899999876554333333234678899998654 55555567899999987543322


Q ss_pred             EecCC-CCeeEEEeec-CCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEccCCCEE-EEee
Q 021399           89 TFNFD-SPARSVDFAV-GDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTI-ISAG  165 (313)
Q Consensus        89 ~~~~~-~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i-~t~~  165 (313)
                      ..... .....+.+.+ ++.+.+......     ...+.....+   .....+ ...........+++++++..+ ++-.
T Consensus       116 ~~~~~~~~P~~i~vd~~~g~lyv~~~~~~-----~~~I~~~~~d---g~~~~~-~~~~~~~~P~gia~d~~~~~lyv~d~  186 (267)
T 1npe_A          116 LFDTGLVNPRGIVTDPVRGNLYWTDWNRD-----NPKIETSHMD---GTNRRI-LAQDNLGLPNGLTFDAFSSQLCWVDA  186 (267)
T ss_dssp             EECSSCSSEEEEEEETTTTEEEEEECCSS-----SCEEEEEETT---SCCCEE-EECTTCSCEEEEEEETTTTEEEEEET
T ss_pred             EEECCCCCccEEEEeeCCCEEEEEECCCC-----CcEEEEEecC---CCCcEE-EEECCCCCCcEEEEcCCCCEEEEEEC
Confidence            22222 3456777877 455554432200     0011111101   111111 111223456788999976555 5555


Q ss_pred             CCCeEEEEECCCCceeeecccccCceeceEEEEECCCCCEEEEeeCCCcEEEEECCCCcEEEEEecCC--ceeEEEeccC
Q 021399          166 EDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTER--PVNAVTMSPL  243 (313)
Q Consensus       166 ~d~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~--~~~~~~~~p~  243 (313)
                      ..+.|.++|....... .+..  . ......++.. ++..+++....+.|..+|.++++.+.++....  ....+++.|+
T Consensus       187 ~~~~I~~~~~~g~~~~-~~~~--~-~~~P~gi~~d-~~~lyva~~~~~~v~~~d~~~g~~~~~i~~g~~~~p~gi~~~~~  261 (267)
T 1npe_A          187 GTHRAECLNPAQPGRR-KVLE--G-LQYPFAVTSY-GKNLYYTDWKTNSVIAMDLAISKEMDTFHPHKQTRLYGITIALS  261 (267)
T ss_dssp             TTTEEEEEETTEEEEE-EEEE--C-CCSEEEEEEE-TTEEEEEETTTTEEEEEETTTTEEEEEECCSSCCCCCCEEEECS
T ss_pred             CCCEEEEEecCCCceE-EEec--C-CCCceEEEEe-CCEEEEEECCCCeEEEEeCCCCCceEEEccccccccceeeecCc
Confidence            6789999998754322 2211  1 1233456654 34444444456899999999999888875432  3556666665


Q ss_pred             C
Q 021399          244 L  244 (313)
Q Consensus       244 ~  244 (313)
                      +
T Consensus       262 ~  262 (267)
T 1npe_A          262 Q  262 (267)
T ss_dssp             C
T ss_pred             c
Confidence            3

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=98.56  E-value=1.4e-05  Score=68.64  Aligned_cols=228  Identities=12%  Similarity=0.092  Sum_probs=122.5

Q ss_pred             CCCEEEEeeCCCCeEEEeCCCCcEEEEecCCCCceEEEEECCCCCeEEEeeCCCcEEEEECCCCeEEEEecCCCCee---
Q 021399           21 DGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFNFDSPAR---   97 (313)
Q Consensus        21 ~g~~l~s~s~d~~i~iw~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~v~vWd~~~~~~~~~~~~~~~~~---   97 (313)
                      ++..++.++.++.+..+|.++++.+................  +..++.++.++.+..+|..+++.++......+..   
T Consensus       102 ~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~p~~~--~~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~~~  179 (376)
T 3q7m_A          102 SGGHVYIGSEKAQVYALNTSDGTVAWQTKVAGEALSRPVVS--DGLVLIHTSNGQLQALNEADGAVKWTVNLDMPSLSLR  179 (376)
T ss_dssp             ETTEEEEEETTSEEEEEETTTCCEEEEEECSSCCCSCCEEE--TTEEEEECTTSEEEEEETTTCCEEEEEECCC-----C
T ss_pred             eCCEEEEEcCCCEEEEEECCCCCEEEEEeCCCceEcCCEEE--CCEEEEEcCCCeEEEEECCCCcEEEEEeCCCCceeec
Confidence            45678888899999999999999887776543221112222  3467778889999999999999888765433221   


Q ss_pred             ---EEEeecCCeEEEEECCCc-eeccc--cceeeeeeeCCCCCCCceEEEec-CCCCceEEEEEccCCCEEEEeeCCCeE
Q 021399           98 ---SVDFAVGDKLAVITTDPF-MELNS--AIHVKRIARDPADQGGESVLILK-GPQGRINRAVWGPLNRTIISAGEDAIV  170 (313)
Q Consensus        98 ---~~~~~~~~~~~~~~~~~~-~~~~~--~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~i~t~~~d~~i  170 (313)
                         .... .++.+.+...+.. ..++.  ....|........ .......+. ....++    .  .+..+..++.++.+
T Consensus       180 ~~~~~~~-~~~~v~~g~~~g~l~~~d~~tG~~~w~~~~~~~~-~~~~~~~~~~~~~~p~----~--~~~~v~~~~~~g~l  251 (376)
T 3q7m_A          180 GESAPTT-AFGAAVVGGDNGRVSAVLMEQGQMIWQQRISQAT-GSTEIDRLSDVDTTPV----V--VNGVVFALAYNGNL  251 (376)
T ss_dssp             CCCCCEE-ETTEEEECCTTTEEEEEETTTCCEEEEEECCC------------CCCCCCE----E--ETTEEEEECTTSCE
T ss_pred             CCCCcEE-ECCEEEEEcCCCEEEEEECCCCcEEEEEecccCC-CCcccccccccCCCcE----E--ECCEEEEEecCcEE
Confidence               1111 1333333322221 11111  1111111100000 000000000 000111    1  24567777889999


Q ss_pred             EEEECCCCceeeecccccCceeceEEEEECCCCCEEEEeeCCCcEEEEECCCCcEEEEEec-C-CceeEEEeccCCCEEE
Q 021399          171 RIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVT-E-RPVNAVTMSPLLDHVV  248 (313)
Q Consensus       171 ~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~-~-~~~~~~~~~p~~~~~~  248 (313)
                      ..+|..+++.+-....     .....+..  ++..+..++.++.+..+|.++++.+-.... . ........  .++.++
T Consensus       252 ~~~d~~tG~~~w~~~~-----~~~~~~~~--~~~~l~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~--~~~~l~  322 (376)
T 3q7m_A          252 TALDLRSGQIMWKREL-----GSVNDFIV--DGNRIYLVDQNDRVMALTIDGGVTLWTQSDLLHRLLTSPVL--YNGNLV  322 (376)
T ss_dssp             EEEETTTCCEEEEECC-----CCEEEEEE--ETTEEEEEETTCCEEEEETTTCCEEEEECTTTTSCCCCCEE--ETTEEE
T ss_pred             EEEECCCCcEEeeccC-----CCCCCceE--ECCEEEEEcCCCeEEEEECCCCcEEEeecccCCCcccCCEE--ECCEEE
Confidence            9999998886543321     12233333  356788888999999999999998766541 1 11222222  245566


Q ss_pred             EcccccCceeEeeccCCCcee
Q 021399          249 LGGGQDASAVTTTDHRAGKFE  269 (313)
Q Consensus       249 ~~~~~~~~~~~~~~~~~~~~~  269 (313)
                      ++..  ...++.+|...++..
T Consensus       323 v~~~--~g~l~~~d~~tG~~~  341 (376)
T 3q7m_A          323 VGDS--EGYLHWINVEDGRFV  341 (376)
T ss_dssp             EECT--TSEEEEEETTTCCEE
T ss_pred             EEeC--CCeEEEEECCCCcEE
Confidence            5432  334666676666543

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=98.50  E-value=0.00015  Score=62.13  Aligned_cols=229  Identities=12%  Similarity=0.103  Sum_probs=122.2

Q ss_pred             CCCEEEEeeCCCCeEEEeCCCCcEEEEecCCC---------Cce-EEEEECCCCCeEEEeeCCCcEEEEECCCCeEEEEe
Q 021399           21 DGDLLFSCAKDHTPTVWFADNGERLGTYRGHN---------GAV-WCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTF   90 (313)
Q Consensus        21 ~g~~l~s~s~d~~i~iw~~~~~~~~~~~~~H~---------~~V-~~~~~~~~~~~l~s~s~D~~v~vWd~~~~~~~~~~   90 (313)
                      ++..++.++.++.|..+|.++++.+.......         ..+ ..+..  ++..++.++.++.+..+|..+++.++..
T Consensus        52 ~~~~v~~~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~v~~~~g~l~a~d~~tG~~~W~~  129 (376)
T 3q7m_A           52 ADNVVYAADRAGLVKALNADDGKEIWSVSLAEKDGWFSKEPALLSGGVTV--SGGHVYIGSEKAQVYALNTSDGTVAWQT  129 (376)
T ss_dssp             ETTEEEEECTTSEEEEEETTTCCEEEEEECCC---CCSCCCCCEEEEEEE--ETTEEEEEETTSEEEEEETTTCCEEEEE
T ss_pred             ECCEEEEEcCCCeEEEEEccCCceeeeecCccccccccccCcccccCceE--eCCEEEEEcCCCEEEEEECCCCCEEEEE
Confidence            36678888889999999999999887766422         223 22333  3456777889999999999999988776


Q ss_pred             cCCCCeeEEEeecCCeEEEEECCCce-eccc--cceeeeeeeCCCCCCCceEEEecCCCCceEEEEEccCCCEEEEeeCC
Q 021399           91 NFDSPARSVDFAVGDKLAVITTDPFM-ELNS--AIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGED  167 (313)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~t~~~d  167 (313)
                      .........-...++.+.+...+... .++.  ....|......      ..........++    .  .+..++.+..+
T Consensus       130 ~~~~~~~~~p~~~~~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~------~~~~~~~~~~~~----~--~~~~v~~g~~~  197 (376)
T 3q7m_A          130 KVAGEALSRPVVSDGLVLIHTSNGQLQALNEADGAVKWTVNLDM------PSLSLRGESAPT----T--AFGAAVVGGDN  197 (376)
T ss_dssp             ECSSCCCSCCEEETTEEEEECTTSEEEEEETTTCCEEEEEECCC-----------CCCCCCE----E--ETTEEEECCTT
T ss_pred             eCCCceEcCCEEECCEEEEEcCCCeEEEEECCCCcEEEEEeCCC------CceeecCCCCcE----E--ECCEEEEEcCC
Confidence            54332211111124444444333211 1111  11111111100      000000001111    1  13567778889


Q ss_pred             CeEEEEECCCCceeeecccccCce-e---ceEEEEECC--CCCEEEEeeCCCcEEEEECCCCcEEEEEecCCceeEEEec
Q 021399          168 AIVRIWDTETGKLLKESDKETGHK-K---TITSLAKAA--DGSHFLTGSLDKSAKLWDARTLELIKTYVTERPVNAVTMS  241 (313)
Q Consensus       168 ~~i~lwd~~~~~~~~~~~~~~~h~-~---~v~~~~~s~--~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~  241 (313)
                      +.|..+|..+++.+-+........ .   .+..+...|  .+..++.++.++.+..+|.++++.+....... ...+.  
T Consensus       198 g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~~~~g~l~~~d~~tG~~~w~~~~~~-~~~~~--  274 (376)
T 3q7m_A          198 GRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVVVNGVVFALAYNGNLTALDLRSGQIMWKRELGS-VNDFI--  274 (376)
T ss_dssp             TEEEEEETTTCCEEEEEECCC-----------CCCCCCEEETTEEEEECTTSCEEEEETTTCCEEEEECCCC-EEEEE--
T ss_pred             CEEEEEECCCCcEEEEEecccCCCCcccccccccCCCcEEECCEEEEEecCcEEEEEECCCCcEEeeccCCC-CCCce--
Confidence            999999999887654332110000 0   000000111  24567888889999999999998876654322 22222  


Q ss_pred             cCCCEEEEcccccCceeEeeccCCCce
Q 021399          242 PLLDHVVLGGGQDASAVTTTDHRAGKF  268 (313)
Q Consensus       242 p~~~~~~~~~~~~~~~~~~~~~~~~~~  268 (313)
                      ..++.++++..  ...++..|...++.
T Consensus       275 ~~~~~l~~~~~--~g~l~~~d~~tG~~  299 (376)
T 3q7m_A          275 VDGNRIYLVDQ--NDRVMALTIDGGVT  299 (376)
T ss_dssp             EETTEEEEEET--TCCEEEEETTTCCE
T ss_pred             EECCEEEEEcC--CCeEEEEECCCCcE
Confidence            23455555432  23355566555543

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=98.50  E-value=3.3e-05  Score=62.21  Aligned_cols=195  Identities=11%  Similarity=0.083  Sum_probs=117.8

Q ss_pred             EEEEecCCC--CceEEEEECCCCCeEEEeeCCCcEEEEECCCCeEEEEecCCCCeeEEEeecCCeEEEEECCCceecccc
Q 021399           44 RLGTYRGHN--GAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSA  121 (313)
Q Consensus        44 ~~~~~~~H~--~~V~~~~~~~~~~~l~s~s~D~~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  121 (313)
                      .+.++ -|.  .....+.|+ ++.++.+.+.+|.|++.|+.+++.+... .....          +.             
T Consensus        45 Vv~~~-phd~~~ftqGL~~~-~~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l~~~~----------Fg-------------   98 (268)
T 3nok_A           45 IIREY-PHATNAFTQGLVFH-QGHFFESTGHQGTLRQLSLESAQPVWME-RLGNI----------FA-------------   98 (268)
T ss_dssp             EEEEE-ECCTTCCEEEEEEE-TTEEEEEETTTTEEEECCSSCSSCSEEE-ECTTC----------CE-------------
T ss_pred             EEEEE-cCCCccccceEEEE-CCEEEEEcCCCCEEEEEECCCCcEEeEE-CCCCc----------ce-------------
Confidence            44455 343  345788887 4678888999999999999998754332 11100          00             


Q ss_pred             ceeeeeeeCCCCCCCceEEEecCCCCceEEEEEccCCCEEEEeeCCCeEEEEECCCCceeeecccccCceeceEEEEECC
Q 021399          122 IHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAA  201 (313)
Q Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~t~~~d~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~  201 (313)
                                                  -.+.+. .++.++....++.+.++|.++.+.+.++... ++   -..++  +
T Consensus        99 ----------------------------eGit~~-g~~Ly~ltw~~~~v~V~D~~Tl~~~~ti~~~-~e---GwGLt--~  143 (268)
T 3nok_A           99 ----------------------------EGLASD-GERLYQLTWTEGLLFTWSGMPPQRERTTRYS-GE---GWGLC--Y  143 (268)
T ss_dssp             ----------------------------EEEEEC-SSCEEEEESSSCEEEEEETTTTEEEEEEECS-SC---CCCEE--E
T ss_pred             ----------------------------eEEEEe-CCEEEEEEccCCEEEEEECCcCcEEEEEeCC-Cc---eeEEe--c
Confidence                                        001111 1233455567899999999999988877542 22   23444  4


Q ss_pred             CCCEEEEeeCCCcEEEEECCCCcEEEEEecC---C---ceeEEEeccCCCEEEEcccccCceeEeeccCCCceeeeeeeh
Q 021399          202 DGSHFLTGSLDKSAKLWDARTLELIKTYVTE---R---PVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDK  275 (313)
Q Consensus       202 ~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~---~---~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  275 (313)
                      |+..|+.+..+++|.++|.++.+.+.++...   .   .++.++|. ++ .+++..- ....+..-|.+.++... .+|.
T Consensus       144 Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~-dG-~lyanvw-~s~~I~vIDp~TG~V~~-~Idl  219 (268)
T 3nok_A          144 WNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQPVELINELECA-NG-VIYANIW-HSSDVLEIDPATGTVVG-VIDA  219 (268)
T ss_dssp             ETTEEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TT-EEEEEET-TCSEEEEECTTTCBEEE-EEEC
T ss_pred             CCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCcccccccccEEe-CC-EEEEEEC-CCCeEEEEeCCCCcEEE-EEEC
Confidence            5777777667899999999999998887532   1   34667765 33 5665543 23456666777766533 2343


Q ss_pred             hhhhh-hcc-ccccccceeEEEECCCCCee
Q 021399          276 ILQEE-IGG-VKGHFGPINALAFNPDGKRY  303 (313)
Q Consensus       276 ~~~~~-~~~-~~~h~~~V~~~~fspdgk~~  303 (313)
                      ..... ... ...-...-+.|||+|++++|
T Consensus       220 ~~L~~~~~~~~~~~~~vlNGIA~dp~~~rl  249 (268)
T 3nok_A          220 SALTRAVAGQVTNPEAVLNGIAVEPGSGRI  249 (268)
T ss_dssp             HHHHHHHTTTCCCTTCCEEEEEECTTTCCE
T ss_pred             CCCcccccccccCcCCceEEEEEcCCCCEE
Confidence            21111 100 01112356999999998874

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=98.45  E-value=6.7e-05  Score=68.26  Aligned_cols=70  Identities=10%  Similarity=0.008  Sum_probs=47.8

Q ss_pred             CCEEEEeeCCCCeEEEeCCCCcEEEEecCCC----CceE-EEEECCCCCeEEEeeC-----CCcEEEEECCCCeEEEEec
Q 021399           22 GDLLFSCAKDHTPTVWFADNGERLGTYRGHN----GAVW-CCDVSRDSMTLITGSA-----DQTAKLWNVETGAQLFTFN   91 (313)
Q Consensus        22 g~~l~s~s~d~~i~iw~~~~~~~~~~~~~H~----~~V~-~~~~~~~~~~l~s~s~-----D~~v~vWd~~~~~~~~~~~   91 (313)
                      +..++.++.|+.+..+|.++++.+.+.+...    ..+. +..+. ++.+++..+.     ++.|..+|..+++.++.+.
T Consensus       115 ~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~P~v~-~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~  193 (571)
T 2ad6_A          115 AGQIVKKQANGHLLALDAKTGKINWEVEVCDPKVGSTLTQAPFVA-KDTVLMGCSGAELGVRGAVNAFDLKTGELKWRAF  193 (571)
T ss_dssp             TTEEEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEE-TTEEEEECBCGGGTCCCEEEEEETTTCCEEEEEE
T ss_pred             CCEEEEEeCCCEEEEEECCCCCEEEEecCCCCCccceeccCCEEE-CCEEEEEecCCccCCCCEEEEEECCCCcEEEEEc
Confidence            5677888889999999999999987765321    0121 11111 4444443332     7999999999999998775


Q ss_pred             C
Q 021399           92 F   92 (313)
Q Consensus        92 ~   92 (313)
                      .
T Consensus       194 ~  194 (571)
T 2ad6_A          194 A  194 (571)
T ss_dssp             S
T ss_pred             c
Confidence            4

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=98.44  E-value=0.00019  Score=57.26  Aligned_cols=196  Identities=17%  Similarity=0.111  Sum_probs=116.4

Q ss_pred             EEEEecCCC--CceEEEEECCCCCeEEEeeCCC--cEEEEECCCCeEEEEecCCCCeeEEEeecCCeEEEEECCCceecc
Q 021399           44 RLGTYRGHN--GAVWCCDVSRDSMTLITGSADQ--TAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELN  119 (313)
Q Consensus        44 ~~~~~~~H~--~~V~~~~~~~~~~~l~s~s~D~--~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  119 (313)
                      .+.++ -|.  ..+..+.|+. +.++.|.+.+|  .|+..|+.+++.+..........                      
T Consensus        11 v~~~~-phd~~~ftqGL~~~~-~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~f----------------------   66 (243)
T 3mbr_X           11 VVKRY-PHDTTAFTEGLFYLR-GHLYESTGETGRSSVRKVDLETGRILQRAEVPPPYF----------------------   66 (243)
T ss_dssp             EEEEE-ECCTTCCEEEEEEET-TEEEEEECCTTSCEEEEEETTTCCEEEEEECCTTCC----------------------
T ss_pred             EEEEc-CCCCccccccEEEEC-CEEEEECCCCCCceEEEEECCCCCEEEEEeCCCCcc----------------------
Confidence            44455 454  4567899986 67778878764  89999999998765543221100                      


Q ss_pred             ccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEccCCCEEEEeeCCCeEEEEECCCCceeeecccccCceeceEEEEE
Q 021399          120 SAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAK  199 (313)
Q Consensus       120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~t~~~d~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~  199 (313)
                                      ++-             +... .++.+.....++.+.++|.++.+.+.++... +   .-..++ 
T Consensus        67 ----------------geG-------------i~~~-~~~ly~ltw~~~~v~v~D~~tl~~~~ti~~~-~---~Gwglt-  111 (243)
T 3mbr_X           67 ----------------GAG-------------IVAW-RDRLIQLTWRNHEGFVYDLATLTPRARFRYP-G---EGWALT-  111 (243)
T ss_dssp             ----------------EEE-------------EEEE-TTEEEEEESSSSEEEEEETTTTEEEEEEECS-S---CCCEEE-
T ss_pred             ----------------eeE-------------EEEe-CCEEEEEEeeCCEEEEEECCcCcEEEEEeCC-C---CceEEe-
Confidence                            000             0000 1223445567899999999999988877532 2   223444 


Q ss_pred             CCCCCEEEEeeCCCcEEEEECCCCcEEEEEecC------CceeEEEeccCCCEEEEcccccCceeEeeccCCCceeeeee
Q 021399          200 AADGSHFLTGSLDKSAKLWDARTLELIKTYVTE------RPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFF  273 (313)
Q Consensus       200 s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~------~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  273 (313)
                       +++..|+.+..+++|.++|.++.+.+.++...      ..++.+.+.  ...+++.... ...+..-|.+.++...+ +
T Consensus       112 -~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~~--~G~lyanvw~-s~~I~vIDp~tG~V~~~-i  186 (243)
T 3mbr_X          112 -SDDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELEWV--NGELLANVWL-TSRIARIDPASGKVVAW-I  186 (243)
T ss_dssp             -ECSSCEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE--TTEEEEEETT-TTEEEEECTTTCBEEEE-E
T ss_pred             -eCCCEEEEECCCCeEEEEeCCCCeEEEEEEEccCCcccccceeeEEe--CCEEEEEECC-CCeEEEEECCCCCEEEE-E
Confidence             45565555556889999999999998887532      235566654  3456655432 33456667766664322 2


Q ss_pred             ehhhhhh-hccc-cccccceeEEEECCCCCee
Q 021399          274 DKILQEE-IGGV-KGHFGPINALAFNPDGKRY  303 (313)
Q Consensus       274 ~~~~~~~-~~~~-~~h~~~V~~~~fspdgk~~  303 (313)
                      |...... .... ..-....+.||++|++++|
T Consensus       187 dl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~l  218 (243)
T 3mbr_X          187 DLQALVPDADALTDSTNDVLNGIAFDAEHDRL  218 (243)
T ss_dssp             ECGGGSTTTTSCCCTTSSCEEEEEEETTTTEE
T ss_pred             ECCcCccccccccCCcCCceEEEEEcCCCCEE
Confidence            3221110 0000 0112356999999998874

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=98.43  E-value=6.4e-05  Score=69.79  Aligned_cols=70  Identities=14%  Similarity=0.165  Sum_probs=47.8

Q ss_pred             CCEEEEeeCCCCeEEEeCCCCcEEEEecCCC----CceEE-EEECCCCCeEEEee-----CCCcEEEEECCCCeEEEEec
Q 021399           22 GDLLFSCAKDHTPTVWFADNGERLGTYRGHN----GAVWC-CDVSRDSMTLITGS-----ADQTAKLWNVETGAQLFTFN   91 (313)
Q Consensus        22 g~~l~s~s~d~~i~iw~~~~~~~~~~~~~H~----~~V~~-~~~~~~~~~l~s~s-----~D~~v~vWd~~~~~~~~~~~   91 (313)
                      +.+++.++.|+.+..+|.++|+++..++...    ..+.+ ..+ .++.+++..+     .++.|..+|.++++.++.+.
T Consensus       117 ~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~P~v-~~~~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~  195 (668)
T 1kv9_A          117 GDKVYVGTLDGRLIALDAKTGKAIWSQQTTDPAKPYSITGAPRV-VKGKVIIGNGGAEYGVRGFVSAYDADTGKLAWRFY  195 (668)
T ss_dssp             BTEEEEECTTSEEEEEETTTCCEEEEEECSCTTSSCBCCSCCEE-ETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEE
T ss_pred             CCEEEEEcCCCEEEEEECCCCCEeeeeccCCCCCcceecCCCEE-ECCEEEEeCCCCCcCCCCEEEEEECCCCcEEEEec
Confidence            5678888899999999999999988876421    11111 111 1444444332     26899999999999998775


Q ss_pred             C
Q 021399           92 F   92 (313)
Q Consensus        92 ~   92 (313)
                      .
T Consensus       196 ~  196 (668)
T 1kv9_A          196 T  196 (668)
T ss_dssp             S
T ss_pred             c
Confidence            3

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=98.40  E-value=0.00049  Score=55.90  Aligned_cols=249  Identities=8%  Similarity=-0.041  Sum_probs=126.1

Q ss_pred             CEEEEeeCCCCeEEEeCCCCcE-----EEEecCCCCceEEEEECCCCC-eEEEeeCCCcEEEEECCCCeEEEEecCC-CC
Q 021399           23 DLLFSCAKDHTPTVWFADNGER-----LGTYRGHNGAVWCCDVSRDSM-TLITGSADQTAKLWNVETGAQLFTFNFD-SP   95 (313)
Q Consensus        23 ~~l~s~s~d~~i~iw~~~~~~~-----~~~~~~H~~~V~~~~~~~~~~-~l~s~s~D~~v~vWd~~~~~~~~~~~~~-~~   95 (313)
                      ++|+.+.. +.|+.++++....     ...+.........++|+++++ ++++-...+.|..+++.+.......... ..
T Consensus         2 ~~l~~~~~-~~I~~~~~~g~~~~~~~~~~~~~~~~~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~   80 (267)
T 1npe_A            2 THLLFAQT-GKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGS   80 (267)
T ss_dssp             EEEEEEEE-EEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCC
T ss_pred             cEEEEEcC-CeEEEEEecCcccccccceeeecCCCCcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEEEEECCCCC
Confidence            34444443 4677777665432     111222223567899998654 5555556789999999766443333222 35


Q ss_pred             eeEEEeecC-CeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEccCCCEEEEeeC---CCeEE
Q 021399           96 ARSVDFAVG-DKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGE---DAIVR  171 (313)
Q Consensus        96 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~t~~~---d~~i~  171 (313)
                      ...+.+.+. +.+.+.....     .  .+..+..+   ...... ...........++++|.+..+..+..   .+.|.
T Consensus        81 p~~ia~d~~~~~lyv~d~~~-----~--~I~~~~~~---g~~~~~-~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~  149 (267)
T 1npe_A           81 PEGIALDHLGRTIFWTDSQL-----D--RIEVAKMD---GTQRRV-LFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIE  149 (267)
T ss_dssp             EEEEEEETTTTEEEEEETTT-----T--EEEEEETT---SCSCEE-EECSSCSSEEEEEEETTTTEEEEEECCSSSCEEE
T ss_pred             ccEEEEEecCCeEEEEECCC-----C--EEEEEEcC---CCCEEE-EEECCCCCccEEEEeeCCCEEEEEECCCCCcEEE
Confidence            567777764 4554443221     0  11111000   001111 11212234578889996555444433   46888


Q ss_pred             EEECCCCceeeecccccCceeceEEEEECCCCCEEEE-eeCCCcEEEEECCCCcEEEEEecCCceeEEEeccCCCEEEEc
Q 021399          172 IWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLT-GSLDKSAKLWDARTLELIKTYVTERPVNAVTMSPLLDHVVLG  250 (313)
Q Consensus       172 lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s-~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~  250 (313)
                      .+++... ....+..  ..-.....+++++++..|.. -...+.|..+|++.......+........++.  +++.++++
T Consensus       150 ~~~~dg~-~~~~~~~--~~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~~~~P~gi~~--d~~~lyva  224 (267)
T 1npe_A          150 TSHMDGT-NRRILAQ--DNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVLEGLQYPFAVTS--YGKNLYYT  224 (267)
T ss_dssp             EEETTSC-CCEEEEC--TTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEEEEEECCCSEEEEEE--ETTEEEEE
T ss_pred             EEecCCC-CcEEEEE--CCCCCCcEEEEcCCCCEEEEEECCCCEEEEEecCCCceEEEecCCCCceEEEE--eCCEEEEE
Confidence            8887532 2222211  11235788999998766654 44567899999976443322222222234443  34555554


Q ss_pred             ccccCceeEeeccCCCceeeeeeehhhhhhhcccccc-ccceeEEEECCCCC
Q 021399          251 GGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGH-FGPINALAFNPDGK  301 (313)
Q Consensus       251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h-~~~V~~~~fspdgk  301 (313)
                      .... ..+            ..+|..+++.+..+... ....+.|++.||+-
T Consensus       225 ~~~~-~~v------------~~~d~~~g~~~~~i~~g~~~~p~gi~~~~~~~  263 (267)
T 1npe_A          225 DWKT-NSV------------IAMDLAISKEMDTFHPHKQTRLYGITIALSQC  263 (267)
T ss_dssp             ETTT-TEE------------EEEETTTTEEEEEECCSSCCCCCCEEEECSCC
T ss_pred             ECCC-CeE------------EEEeCCCCCceEEEccccccccceeeecCccC
Confidence            3221 222            33444444433333211 12357888888864

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=98.38  E-value=1.5e-05  Score=71.62  Aligned_cols=209  Identities=11%  Similarity=0.047  Sum_probs=120.4

Q ss_pred             ceeEEEE-c-cCCCEEEEee------------------CCCCeEEEeCCCCcEEEEecCCCCceEEEEECCCCCeEEEee
Q 021399           12 PLTYLKY-N-KDGDLLFSCA------------------KDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGS   71 (313)
Q Consensus        12 ~v~~~~f-s-~~g~~l~s~s------------------~d~~i~iw~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s   71 (313)
                      .+..+++ + |++++++.++                  .++.+.+.|.++.+...++.--. .-..++++|+|+++++.+
T Consensus       135 ~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~vtvID~~t~~v~~qI~Vgg-~pd~~~~spdGk~~~vt~  213 (595)
T 1fwx_A          135 GIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFTAVDADKWEVAWQVLVSG-NLDNCDADYEGKWAFSTS  213 (595)
T ss_dssp             SEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEEEEEEETTTTEEEEEEEESS-CCCCEEECSSSSEEEEEE
T ss_pred             CCcceeeeecCCCcEEEEecccccccCCCCcccccccccCceEEEEECCCCeEEEEEEeCC-CccceEECCCCCEEEEEe
Confidence            4678887 5 9999999885                  24578899999988877765211 223467899999888887


Q ss_pred             CCC---------------cEEEEECCCCeEEEEecCCCCeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCC
Q 021399           72 ADQ---------------TAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGG  136 (313)
Q Consensus        72 ~D~---------------~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  136 (313)
                      .+.               .|.+.|....+.   .........+     +.+.++-..               ..   ...
T Consensus       214 ~~se~~~~i~~~~~~~~d~v~V~~~~~~~~---~v~~Gk~~~i-----~~V~VID~~---------------~~---~~~  267 (595)
T 1fwx_A          214 YNSEKGMTLPEMTAAEMDHIVVFNIAEIEK---AIAAGDYQEL-----NGVKVVDGR---------------KE---ASS  267 (595)
T ss_dssp             SCTTCCSSHHHHTCCSEEEEEEEEHHHHHH---HHHHTCSEEE-----TTEEEEECS---------------GG---GCC
T ss_pred             cCcccCcchhhccccccceEEEeeccceeE---eccCCCeeEE-----CcEEEEeCc---------------cc---CCc
Confidence            653               233333211100   0000000000     111111110               00   000


Q ss_pred             ceEEEecCCCCceEEEEEccCCCEEEEe-eCCCeEEEEECCCCc------------eeeecccccCceeceEEEEECCCC
Q 021399          137 ESVLILKGPQGRINRAVWGPLNRTIISA-GEDAIVRIWDTETGK------------LLKESDKETGHKKTITSLAKAADG  203 (313)
Q Consensus       137 ~~~~~~~~~~~~i~~~~~~~~~~~i~t~-~~d~~i~lwd~~~~~------------~~~~~~~~~~h~~~v~~~~~s~~~  203 (313)
                      ..+..+... .....+.++|+|++++.+ ..+.+|.++|+.+.+            ...++.    -......++|+++|
T Consensus       268 ~~~~~Ipvg-~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~----vG~gP~h~aF~~dG  342 (595)
T 1fwx_A          268 LFTRYIPIA-NNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPE----LGLGPLHTAFDGRG  342 (595)
T ss_dssp             SSEEEEEEE-SSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCB----CCSCEEEEEECTTS
T ss_pred             eeEEEEecC-CCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEcC----CCCCcceEEECCCC
Confidence            001111111 133568899999976654 578899999998542            122221    23457889999999


Q ss_pred             CEEEEeeCCCcEEEEECCC----------CcEEEEEecCCce------eEEEeccCCCEEEEccc
Q 021399          204 SHFLTGSLDKSAKLWDART----------LELIKTYVTERPV------NAVTMSPLLDHVVLGGG  252 (313)
Q Consensus       204 ~~l~s~s~dg~i~iwd~~~----------~~~~~~~~~~~~~------~~~~~~p~~~~~~~~~~  252 (313)
                      ...++.-.|++|.+||+++          .+.+.++......      ....++|+|..++++..
T Consensus       343 ~aY~t~~ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV~yqpGh~~~~~g~t~~~DGk~l~~~Nk  407 (595)
T 1fwx_A          343 NAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQPGHLKTVMGETLDATNDWLVCLSK  407 (595)
T ss_dssp             EEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSCEEEEEETTTTSTTCCSSEEEEEES
T ss_pred             eEEEEEecCCcEEEEEhhHhhhhhcccccceeEEEeecccccccceeccceEeCCCCCEEEEcCC
Confidence            5455666799999999887          5566666543332      12345888988887644

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=98.35  E-value=0.00011  Score=68.12  Aligned_cols=98  Identities=10%  Similarity=0.106  Sum_probs=60.7

Q ss_pred             EEEEcc-CCCEEEEeeCCC-----------CeEEEeCCCCcE--EEEec-CCCCceEEEEECCCCCeEEEeeC-CCcEEE
Q 021399           15 YLKYNK-DGDLLFSCAKDH-----------TPTVWFADNGER--LGTYR-GHNGAVWCCDVSRDSMTLITGSA-DQTAKL   78 (313)
Q Consensus        15 ~~~fs~-~g~~l~s~s~d~-----------~i~iw~~~~~~~--~~~~~-~H~~~V~~~~~~~~~~~l~s~s~-D~~v~v   78 (313)
                      .+++.+ +|+.++.|+.+.           .+.+||..+++.  +..+. .+.....++++..++++++.||. +..+.+
T Consensus       190 ~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~lyv~GG~~~~~v~~  269 (656)
T 1k3i_A          190 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSL  269 (656)
T ss_dssp             EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEEE
T ss_pred             eEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCCCCccccccCCCCCCEEEeCCCCCCceEE
Confidence            456677 889999887653           478899888763  22232 23333334677788999999984 568999


Q ss_pred             EECCCCeEEEEecCC--CCeeEEEeecCCeEEEEEC
Q 021399           79 WNVETGAQLFTFNFD--SPARSVDFAVGDKLAVITT  112 (313)
Q Consensus        79 Wd~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~  112 (313)
                      ||+.+.+-.......  .....+.+.+++++.++..
T Consensus       270 yd~~t~~W~~~~~~~~~R~~~s~~~~~dg~iyv~GG  305 (656)
T 1k3i_A          270 YDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGG  305 (656)
T ss_dssp             EEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECC
T ss_pred             ecCcCCceeECCCCCccccccceEEecCCeEEEEeC
Confidence            999876533322221  2223444555666665544

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=98.33  E-value=0.0002  Score=65.37  Aligned_cols=77  Identities=17%  Similarity=0.153  Sum_probs=50.8

Q ss_pred             EEEccCCCE----EEEeeCCCCeEEEeCCCCcEEEEecCCCC----ceEE-EEECCCCCeEEEee-----CCCcEEEEEC
Q 021399           16 LKYNKDGDL----LFSCAKDHTPTVWFADNGERLGTYRGHNG----AVWC-CDVSRDSMTLITGS-----ADQTAKLWNV   81 (313)
Q Consensus        16 ~~fs~~g~~----l~s~s~d~~i~iw~~~~~~~~~~~~~H~~----~V~~-~~~~~~~~~l~s~s-----~D~~v~vWd~   81 (313)
                      ++++|.+..    |+.++.|+.+.-+|.++|+++...+....    .+.+ ..+ .++.+++.++     .++.|+.+|.
T Consensus       111 ~av~p~~g~~~~rV~v~t~dg~l~AlDa~TG~~~W~~~~~~~~~~~~~~ssP~v-~~g~V~vg~~g~e~g~~g~v~A~D~  189 (599)
T 1w6s_A          111 LAYWPGDGKTPALILKTQLDGNVAALNAETGETVWKVENSDIKVGSTLTIAPYV-VKDKVIIGSSGAELGVRGYLTAYDV  189 (599)
T ss_dssp             CEEECCCSSSCCEEEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEE-ETTEEEECCBCGGGTCCCEEEEEET
T ss_pred             eEEEecCCcceeEEEEEcCCCEEEEEECCCCCEEEeecCCCCCccceeecCCEE-ECCEEEEEecccccCCCCeEEEEEC
Confidence            445444444    78888999999999999999877653220    2211 111 1444444332     4899999999


Q ss_pred             CCCeEEEEecCC
Q 021399           82 ETGAQLFTFNFD   93 (313)
Q Consensus        82 ~~~~~~~~~~~~   93 (313)
                      ++++.++.+...
T Consensus       190 ~TG~~~W~~~~~  201 (599)
T 1w6s_A          190 KTGEQVWRAYAT  201 (599)
T ss_dssp             TTCCEEEEEESS
T ss_pred             CCCcEEEEEcCC
Confidence            999999887643

>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}

Probab=98.31  E-value=0.0001  Score=69.48  Aligned_cols=188  Identities=11%  Similarity=-0.026  Sum_probs=97.6

Q ss_pred             ceeEEEEc-cCCCEEEEeeC-CC----CeEEEeCCCC-cEEE-EecCCCCceEEEEECCCCCeEEEeeCCC-----cEEE
Q 021399           12 PLTYLKYN-KDGDLLFSCAK-DH----TPTVWFADNG-ERLG-TYRGHNGAVWCCDVSRDSMTLITGSADQ-----TAKL   78 (313)
Q Consensus        12 ~v~~~~fs-~~g~~l~s~s~-d~----~i~iw~~~~~-~~~~-~~~~H~~~V~~~~~~~~~~~l~s~s~D~-----~v~v   78 (313)
                      .+...+|| |||++|+-+.. +|    .|+++|++++ +.+. .+..   ....++|+|||+.|+-...|.     .|.+
T Consensus       175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~~~~~---~~~~~~WspDg~~l~y~~~d~~~~~~~v~~  251 (751)
T 2xe4_A          175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIADKVSG---TNGEIVWGPDHTSLFYVTKDETLRENKVWR  251 (751)
T ss_dssp             EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCCCEEE---ECSCCEECSSTTEEEEEEECTTCCEEEEEE
T ss_pred             EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCccccC---ceeeEEEecCCCEEEEEEECCCCCCCEEEE
Confidence            56778999 99998885433 22    4999999988 6321 1111   123578999998666555442     2444


Q ss_pred             EECCCCeEEEEecCCCCeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEec-CCCCceEEEEEccC
Q 021399           79 WNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILK-GPQGRINRAVWGPL  157 (313)
Q Consensus        79 Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~~~~  157 (313)
                      +++.+++.                                                  ..+..+. ........+.|+|+
T Consensus       252 ~~lgt~~~--------------------------------------------------~~~lv~~~~~~~~~~~~~~SpD  281 (751)
T 2xe4_A          252 HVMGKLQS--------------------------------------------------EDVCLYEEHNPLFSAFMYKAAD  281 (751)
T ss_dssp             EETTSCGG--------------------------------------------------GCEEEEECCCTTCEEEEEECTT
T ss_pred             EECCCCch--------------------------------------------------hcEEEEecCCCceEEEEEECCC
Confidence            44433210                                                  0000111 11122346778999


Q ss_pred             CCEEEEee---CCCeEEEEECCCCc-ee--eecccccCceeceEEEEECCCCCEEEEeeCC----CcEEEEECCCCcEEE
Q 021399          158 NRTIISAG---EDAIVRIWDTETGK-LL--KESDKETGHKKTITSLAKAADGSHFLTGSLD----KSAKLWDARTLELIK  227 (313)
Q Consensus       158 ~~~i~t~~---~d~~i~lwd~~~~~-~~--~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d----g~i~iwd~~~~~~~~  227 (313)
                      +++|+...   ....|.++|+.++. ..  ..+..  .......++.|+.++.+++....+    ..|..+|+.+.....
T Consensus       282 g~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~--~~~~~~~s~~~~~g~~l~~~t~~~~a~~~~L~~~d~~~~~~~~  359 (751)
T 2xe4_A          282 TNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVRP--REKGVRYDVQMHGTSHLVILTNEGGAVNHKLLIAPRGQPSDWS  359 (751)
T ss_dssp             SSEEEEEEECSSCEEEEEEESSSCTTCCCEEESSC--CCTTCCEEEEEETTTEEEEEECTTTCTTCEEEEEETTSTTCCC
T ss_pred             CCEEEEEecCCCCceEEEEECCCCCCCceeEEeec--CCCCceEEEeeeeCCEEEEEeCCCCCCCcEEEEEcCCCcccce
Confidence            99887654   34568889987652 12  22221  123344555554444444444443    256666776422212


Q ss_pred             E--EecCCceeEEEeccCCCEEEEccccc
Q 021399          228 T--YVTERPVNAVTMSPLLDHVVLGGGQD  254 (313)
Q Consensus       228 ~--~~~~~~~~~~~~~p~~~~~~~~~~~~  254 (313)
                      .  +.......--.+.+.++.+++....+
T Consensus       360 ~~li~~~~~~~l~~~~~~~~~lv~~~~~~  388 (751)
T 2xe4_A          360 HVLVDHSEDVFMESIAVRSNYLVVAGRRA  388 (751)
T ss_dssp             CEEECCCSSEEEEEEEECSSEEEEEEEET
T ss_pred             eeEECCCCCcEEEEEEEECCEEEEEEEeC
Confidence            2  22222222223444566776655443

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=98.28  E-value=0.00012  Score=67.92  Aligned_cols=78  Identities=14%  Similarity=0.194  Sum_probs=58.7

Q ss_pred             EEEEccCCCEEEEeeCCCC-------------------eEEEeCCCCcEEEEecC--CC-------CceEEEEECCCCC-
Q 021399           15 YLKYNKDGDLLFSCAKDHT-------------------PTVWFADNGERLGTYRG--HN-------GAVWCCDVSRDSM-   65 (313)
Q Consensus        15 ~~~fs~~g~~l~s~s~d~~-------------------i~iw~~~~~~~~~~~~~--H~-------~~V~~~~~~~~~~-   65 (313)
                      ..+++|++.+++.++.++.                   |.-+|.++++.+..++.  |.       .+.....+..+|+ 
T Consensus       234 ~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~tG~~~W~~~~~~~~~wd~~~~~~~~~~d~~~~G~~  313 (668)
T 1kv9_A          234 SMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGKP  313 (668)
T ss_dssp             CEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEE
T ss_pred             ceEEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCCCCceeeEeecCCCccccccCCCCcEEEEeccCCcE
Confidence            5789998889988887763                   88899999999888764  32       2232233334665 


Q ss_pred             --eEEEeeCCCcEEEEECCCCeEEEEecC
Q 021399           66 --TLITGSADQTAKLWNVETGAQLFTFNF   92 (313)
Q Consensus        66 --~l~s~s~D~~v~vWd~~~~~~~~~~~~   92 (313)
                        .++.++.+|.+.++|..+++.+....+
T Consensus       314 ~~~v~~~~~~G~l~~lD~~tG~~l~~~~~  342 (668)
T 1kv9_A          314 RKVLMQAPKNGFFYVLDRTNGKLISAEKF  342 (668)
T ss_dssp             EEEEEECCTTSEEEEEETTTCCEEEEEES
T ss_pred             EEEEEEECCCCEEEEEECCCCCEeccccc
Confidence              688999999999999999998865543

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=98.28  E-value=0.00071  Score=61.63  Aligned_cols=71  Identities=17%  Similarity=0.187  Sum_probs=47.9

Q ss_pred             CCEEEEeeCCCCeEEEeCCCCcEEEEecCCCC----ceE-EEEECC---CCC-eEEEee------CCCcEEEEECCCCeE
Q 021399           22 GDLLFSCAKDHTPTVWFADNGERLGTYRGHNG----AVW-CCDVSR---DSM-TLITGS------ADQTAKLWNVETGAQ   86 (313)
Q Consensus        22 g~~l~s~s~d~~i~iw~~~~~~~~~~~~~H~~----~V~-~~~~~~---~~~-~l~s~s------~D~~v~vWd~~~~~~   86 (313)
                      +..++.++.|+.+.-+|.++|+.+...+....    .+. +..+..   +++ .++.++      .++.|..+|..+++.
T Consensus       117 ~~~v~~~t~dg~l~AlD~~TG~~~W~~~~~~~~~~~~~~~sP~v~~~~~~G~~~v~vg~~~~e~~~~g~v~alD~~tG~~  196 (582)
T 1flg_A          117 GDKVFFGTLDASVVALNKNTGKVVWKKKFADHGAGYTMTGAPTIVKDGKTGKVLLIHGSSGDEFGVVGRLFARDPDTGEE  196 (582)
T ss_dssp             TTEEEEEETTTEEEEEESSSCCEEEEEECSCGGGTCBCCSCCEEEECTTTCCEEEEECCBCGGGCCBCEEEEECTTTCCE
T ss_pred             CCEEEEEeCCCEEEEEECCCCCEEeeecCCCCCcCcccccCCEEeCCCcCCcEEEEEeccccccCCCCEEEEEECCCCCE
Confidence            55778888999999999999999877654321    111 111111   232 555554      379999999999999


Q ss_pred             EEEecC
Q 021399           87 LFTFNF   92 (313)
Q Consensus        87 ~~~~~~   92 (313)
                      ++....
T Consensus       197 ~W~~~~  202 (582)
T 1flg_A          197 IWMRPF  202 (582)
T ss_dssp             EEEEES
T ss_pred             EeecCC
Confidence            886543

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=98.25  E-value=0.0013  Score=54.52  Aligned_cols=224  Identities=10%  Similarity=-0.014  Sum_probs=123.7

Q ss_pred             cceeEEEEccCCCEEEEeeCCCCeEEEeCCCCcEEEEecCCCCceEEEEECCCCCeEEEeeCCC--cEEEEECCCCeEEE
Q 021399           11 RPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQ--TAKLWNVETGAQLF   88 (313)
Q Consensus        11 ~~v~~~~fs~~g~~l~s~s~d~~i~iw~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~--~v~vWd~~~~~~~~   88 (313)
                      .....++|+++|+.+++-..++.|..||.+.. ....+. -.+....+++.++++++++.....  .|..+|..+++...
T Consensus        32 ~~pegia~~~~g~lyv~d~~~~~I~~~d~~g~-~~~~~~-~~~~p~gia~~~dG~l~vad~~~~~~~v~~~d~~~g~~~~  109 (306)
T 2p4o_A           32 TFLENLASAPDGTIFVTNHEVGEIVSITPDGN-QQIHAT-VEGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTVET  109 (306)
T ss_dssp             CCEEEEEECTTSCEEEEETTTTEEEEECTTCC-EEEEEE-CSSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCEEE
T ss_pred             CCcceEEECCCCCEEEEeCCCCeEEEECCCCc-eEEEEe-CCCCceeEEEcCCCcEEEEeccCCcceEEEEcCCCCeEEE
Confidence            45678999999998777768889999987654 333332 235688999999998766554322  36666777776543


Q ss_pred             EecCC--CCeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCc-eEEEe---------cCCCCceEEEEEcc
Q 021399           89 TFNFD--SPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGE-SVLIL---------KGPQGRINRAVWGP  156 (313)
Q Consensus        89 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~---------~~~~~~i~~~~~~~  156 (313)
                      .....  .....+...++..+.+.....       ..++.+...    .+. .+...         .+.....+.+  +|
T Consensus       110 ~~~~~~~~~~~g~~~~~~~~~~v~d~~~-------g~i~~~d~~----~~~~~v~~~~~~~~~~~~~~~~~~pngi--s~  176 (306)
T 2p4o_A          110 LLTLPDAIFLNGITPLSDTQYLTADSYR-------GAIWLIDVV----QPSGSIWLEHPMLARSNSESVFPAANGL--KR  176 (306)
T ss_dssp             EEECTTCSCEEEEEESSSSEEEEEETTT-------TEEEEEETT----TTEEEEEEECGGGSCSSTTCCSCSEEEE--EE
T ss_pred             EEeCCCccccCcccccCCCcEEEEECCC-------CeEEEEeCC----CCcEeEEEECCccccccccCCCCcCCCc--Cc
Confidence            33221  112222223333333322110       011111100    000 00000         0011122334  67


Q ss_pred             CCCEE-EEeeCCCeEEEEECCC-CceeeecccccCceeceEEEEECCCCCEEEEeeCCCcEEEEECCCCcEEE--EEecC
Q 021399          157 LNRTI-ISAGEDAIVRIWDTET-GKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIK--TYVTE  232 (313)
Q Consensus       157 ~~~~i-~t~~~d~~i~lwd~~~-~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~--~~~~~  232 (313)
                      +++.+ ++-...+.|..+|+.. ++. ...... ........++++++|+..++....+.|..+|.+ ++...  .+...
T Consensus       177 dg~~lyv~d~~~~~I~~~~~~~~g~~-~~~~~~-~~~~~P~gi~vd~dG~l~va~~~~~~V~~~~~~-G~~~~~~~~~~~  253 (306)
T 2p4o_A          177 FGNFLYVSNTEKMLLLRIPVDSTDKP-GEPEIF-VEQTNIDDFAFDVEGNLYGATHIYNSVVRIAPD-RSTTIIAQAEQG  253 (306)
T ss_dssp             ETTEEEEEETTTTEEEEEEBCTTSCB-CCCEEE-EESCCCSSEEEBTTCCEEEECBTTCCEEEECTT-CCEEEEECGGGT
T ss_pred             CCCEEEEEeCCCCEEEEEEeCCCCCC-CccEEE-eccCCCCCeEECCCCCEEEEeCCCCeEEEECCC-CCEEEEeecccc
Confidence            77654 4555678999999864 321 110000 001235668889999988877778899999976 55432  23222


Q ss_pred             -CceeEEEec---cCCCEEEEccc
Q 021399          233 -RPVNAVTMS---PLLDHVVLGGG  252 (313)
Q Consensus       233 -~~~~~~~~~---p~~~~~~~~~~  252 (313)
                       ....+++|.   |+++.++++..
T Consensus       254 ~~~p~~~a~~g~~~d~~~LyVt~~  277 (306)
T 2p4o_A          254 VIGSTAVAFGQTEGDCTAIYVVTN  277 (306)
T ss_dssp             CTTEEEEEECCSTTTTTEEEEEEC
T ss_pred             cCCceEEEEecccCCCCEEEEECC
Confidence             457888998   88888877643

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=98.23  E-value=5.1e-05  Score=63.54  Aligned_cols=246  Identities=15%  Similarity=0.101  Sum_probs=123.8

Q ss_pred             ceeEEEEccCCCEEEEeeCCCCeEEEeCCCCcEEEEecCCCCceEEEEECCCCCeEEEeeCCCcEEEEECCCCeEEEEec
Q 021399           12 PLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFN   91 (313)
Q Consensus        12 ~v~~~~fs~~g~~l~s~s~d~~i~iw~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~v~vWd~~~~~~~~~~~   91 (313)
                      .+.++...++|...+ ++.+  +..+|. +++.+..+...........+.  +..+..++.++.+..+|.. ++......
T Consensus        61 ~~~~~~~~~~g~l~v-~t~~--l~~~d~-~g~~~~~~~~~~~~~~~~~~~--~~~l~v~t~~~~l~~~d~~-g~~~~~~~  133 (330)
T 3hxj_A           61 IECRPSIGKDGTIYF-GSDK--VYAINP-DGTEKWRFDTKKAIVSDFTIF--EDILYVTSMDGHLYAINTD-GTEKWRFK  133 (330)
T ss_dssp             EEECCEETTTTEECC-SSCE--EEEECC-CGGGGGGSCC-----CCEEEE--TTEEEEECTTSEEEEECTT-SCEEEEEE
T ss_pred             cccceEEecCCcEEE-ecCc--EEEECC-CCcEEEEEECCCCcccCceEE--CCEEEEEecCCEEEEEcCC-CCEEEEEc
Confidence            345566666665444 4444  777775 565544444333222223333  3456667788999999988 76665554


Q ss_pred             CCCC-eeEEEeecCCeEEEEECCC-ceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEccCCCEEEEeeCCCe
Q 021399           92 FDSP-ARSVDFAVGDKLAVITTDP-FMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAI  169 (313)
Q Consensus        92 ~~~~-~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~t~~~d~~  169 (313)
                      .... ...+...+++.+.+...+. ...++..              +............+..+...+++..++ ++  +.
T Consensus       134 ~~~~~~~~~~~~~~g~l~vgt~~~~l~~~d~~--------------g~~~~~~~~~~~~~~~~~~d~~g~l~v-~t--~~  196 (330)
T 3hxj_A          134 TKKAIYATPIVSEDGTIYVGSNDNYLYAINPD--------------GTEKWRFKTNDAITSAASIGKDGTIYF-GS--DK  196 (330)
T ss_dssp             CSSCCCSCCEECTTSCEEEECTTSEEEEECTT--------------SCEEEEEECSSCCCSCCEECTTCCEEE-ES--SS
T ss_pred             CCCceeeeeEEcCCCEEEEEcCCCEEEEECCC--------------CCEeEEEecCCCceeeeEEcCCCEEEE-Ee--CE
Confidence            3222 2223333345554443322 1111111              112222222233444555666666544 44  77


Q ss_pred             EEEEECCCCceeeecccccCceeceEEEEECCCCCEEEEeeCCCcEEEEECCCCcEEEEEecCCc-eeEEEeccCCCEEE
Q 021399          170 VRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTERP-VNAVTMSPLLDHVV  248 (313)
Q Consensus       170 i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~-~~~~~~~p~~~~~~  248 (313)
                      |..+| .+++.+-...   .....+.++...++|. |..++.++.+..+|. +++.+..+..... ...+...+.+ .+.
T Consensus       197 l~~~d-~~g~~~~~~~---~~~~~~~~~~~~~~g~-l~v~t~~~gl~~~~~-~g~~~~~~~~~~~~~~~~~~~~~g-~l~  269 (330)
T 3hxj_A          197 VYAIN-PDGTEKWNFY---AGYWTVTRPAISEDGT-IYVTSLDGHLYAINP-DGTEKWRFKTGKRIESSPVIGNTD-TIY  269 (330)
T ss_dssp             EEEEC-TTSCEEEEEC---CSSCCCSCCEECTTSC-EEEEETTTEEEEECT-TSCEEEEEECSSCCCSCCEECTTS-CEE
T ss_pred             EEEEC-CCCcEEEEEc---cCCcceeceEECCCCe-EEEEcCCCeEEEECC-CCCEeEEeeCCCCccccceEcCCC-eEE
Confidence            89999 6665543332   1234577778888875 566777888888874 5666555543322 3334444333 444


Q ss_pred             EcccccCceeEeeccCCCceeeeeeehhhhhhhccccccccceeEEEECCCCCee
Q 021399          249 LGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKRY  303 (313)
Q Consensus       249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~fspdgk~~  303 (313)
                      ++.. + .-++.+|. .++..   |.         +......+.++...++|+.+
T Consensus       270 v~t~-~-ggl~~~d~-~g~~~---~~---------~~~~~~~~~~~~~d~~g~l~  309 (330)
T 3hxj_A          270 FGSY-D-GHLYAINP-DGTEK---WN---------FETGSWIIATPVIDENGTIY  309 (330)
T ss_dssp             EECT-T-CEEEEECT-TSCEE---EE---------EECSSCCCSCCEECTTCCEE
T ss_pred             EecC-C-CCEEEECC-CCcEE---EE---------EEcCCccccceEEcCCCEEE
Confidence            4432 2 22444453 23221   11         11123456667777777653

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=98.21  E-value=0.0018  Score=54.18  Aligned_cols=215  Identities=11%  Similarity=0.039  Sum_probs=119.6

Q ss_pred             cccccccceeEEEEccCCCEEEEeeCCCCeEEEeCCCCcEEEEecC--------------------CCCceEEEEECC-C
Q 021399            5 LMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRG--------------------HNGAVWCCDVSR-D   63 (313)
Q Consensus         5 ~l~~h~~~v~~~~fs~~g~~l~s~s~d~~i~iw~~~~~~~~~~~~~--------------------H~~~V~~~~~~~-~   63 (313)
                      .+.+......+++++++|.+++++..++.|..|+.++++.. .+..                    .......+++.+ +
T Consensus        13 ~~~g~~~~p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~   91 (322)
T 2fp8_A           13 LIEAPSYAPNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGFV-DFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQN   91 (322)
T ss_dssp             EEECSSSCCCCEECCTTCSSEEEECTTSEEEEECCTTTCEE-EEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTT
T ss_pred             ecCCccCCceEEEEcCCCCEEEEEcCCCeEEEECCCCCceE-EEecccccccccccccccchhccccCCCCceEEEcCCC
Confidence            34454456788999999997888888999999987765432 2211                    013478899997 6


Q ss_pred             CCeEEEeeCCCcEEEEECCCCeEEEEec-C----CCCeeEEEeec-CCeEEEEECCCceec----------cccceeeee
Q 021399           64 SMTLITGSADQTAKLWNVETGAQLFTFN-F----DSPARSVDFAV-GDKLAVITTDPFMEL----------NSAIHVKRI  127 (313)
Q Consensus        64 ~~~l~s~s~D~~v~vWd~~~~~~~~~~~-~----~~~~~~~~~~~-~~~~~~~~~~~~~~~----------~~~~~~~~~  127 (313)
                      +++++ +...+.+..+|..+++...... .    ......+.+.+ ++.+.+.........          .....+..+
T Consensus        92 g~l~v-~d~~~~i~~~d~~~g~~~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~  170 (322)
T 2fp8_A           92 NQLYI-VDCYYHLSVVGSEGGHATQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKY  170 (322)
T ss_dssp             TEEEE-EETTTEEEEECTTCEECEEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEE
T ss_pred             CcEEE-EECCCCEEEEeCCCCEEEEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEE
Confidence            65544 4444558888877654322111 1    12245566666 666555433210000          000111111


Q ss_pred             eeCCCCCCCceEEEecCCCCceEEEEEccCCCEEEEe-eCCCeEEEEECCCCc--eeeecccccCceeceEEEEECCCCC
Q 021399          128 ARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISA-GEDAIVRIWDTETGK--LLKESDKETGHKKTITSLAKAADGS  204 (313)
Q Consensus       128 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~t~-~~d~~i~lwd~~~~~--~~~~~~~~~~h~~~v~~~~~s~~~~  204 (313)
                        ++.  .+. +..+.......+.++++|+++.+..+ ...+.|.++++....  ....+...   .. ...+++.++|+
T Consensus       171 --d~~--~~~-~~~~~~~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~~---~g-P~gi~~d~~G~  241 (322)
T 2fp8_A          171 --DPS--TKE-TTLLLKELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVKI---PN-PGNIKRNADGH  241 (322)
T ss_dssp             --ETT--TTE-EEEEEEEESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEEC---SS-EEEEEECTTSC
T ss_pred             --eCC--CCE-EEEeccCCccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEEeC---CC-CCCeEECCCCC
Confidence              110  011 11111111233568899998855544 566899999986421  11111111   12 67789999998


Q ss_pred             EEEEeeC----------CCcEEEEECCCCcEEEEEec
Q 021399          205 HFLTGSL----------DKSAKLWDARTLELIKTYVT  231 (313)
Q Consensus       205 ~l~s~s~----------dg~i~iwd~~~~~~~~~~~~  231 (313)
                      ..++...          .+.|..+|.+ ++.+..+..
T Consensus       242 l~va~~~~~~~~~~~~~~~~v~~~d~~-G~~~~~~~~  277 (322)
T 2fp8_A          242 FWVSSSEELDGNMHGRVDPKGIKFDEF-GNILEVIPL  277 (322)
T ss_dssp             EEEEEEEETTSSTTSCEEEEEEEECTT-SCEEEEEEC
T ss_pred             EEEEecCcccccccCCCccEEEEECCC-CCEEEEEEC
Confidence            7776654          4668888874 677666653

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=98.14  E-value=0.00049  Score=57.44  Aligned_cols=203  Identities=14%  Similarity=0.101  Sum_probs=118.6

Q ss_pred             CCEEEEeeCCCCeEEEeCCCCcEEEEecCCCCceEEEEECCCCCeEEEeeCCCcEEEEECCCCeEEEEecCCC-CeeEEE
Q 021399           22 GDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFNFDS-PARSVD  100 (313)
Q Consensus        22 g~~l~s~s~d~~i~iw~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~v~vWd~~~~~~~~~~~~~~-~~~~~~  100 (313)
                      +..|..++.++.+..+|.+ ++.......+...+.++...++++ +..++.++.+..+|.. ++......... ....+.
T Consensus       107 ~~~l~v~t~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~~g~-l~vgt~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~  183 (330)
T 3hxj_A          107 EDILYVTSMDGHLYAINTD-GTEKWRFKTKKAIYATPIVSEDGT-IYVGSNDNYLYAINPD-GTEKWRFKTNDAITSAAS  183 (330)
T ss_dssp             TTEEEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEECTTSC-EEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCE
T ss_pred             CCEEEEEecCCEEEEEcCC-CCEEEEEcCCCceeeeeEEcCCCE-EEEEcCCCEEEEECCC-CCEeEEEecCCCceeeeE
Confidence            4566778888999999988 777777766666666677777776 5556778999999998 77666554322 222333


Q ss_pred             eecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEccCCCEEEEeeCCCeEEEEECCCCce
Q 021399          101 FAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKL  180 (313)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~t~~~d~~i~lwd~~~~~~  180 (313)
                      ...++.+.+.. .....++              ..+............+.++...+++. +..++.++.|..+|. +++.
T Consensus       184 ~d~~g~l~v~t-~~l~~~d--------------~~g~~~~~~~~~~~~~~~~~~~~~g~-l~v~t~~~gl~~~~~-~g~~  246 (330)
T 3hxj_A          184 IGKDGTIYFGS-DKVYAIN--------------PDGTEKWNFYAGYWTVTRPAISEDGT-IYVTSLDGHLYAINP-DGTE  246 (330)
T ss_dssp             ECTTCCEEEES-SSEEEEC--------------TTSCEEEEECCSSCCCSCCEECTTSC-EEEEETTTEEEEECT-TSCE
T ss_pred             EcCCCEEEEEe-CEEEEEC--------------CCCcEEEEEccCCcceeceEECCCCe-EEEEcCCCeEEEECC-CCCE
Confidence            33444544443 2222211              11122222222334456666677665 555677788888885 4444


Q ss_pred             eeecccccCceeceEEEEECCCCCEEEEeeCCCcEEEEECCCCcEEEEEec-CCceeEEEeccCCCEEEEc
Q 021399          181 LKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVT-ERPVNAVTMSPLLDHVVLG  250 (313)
Q Consensus       181 ~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~-~~~~~~~~~~p~~~~~~~~  250 (313)
                      +.....   ....+..+...+++ .|..++.+|.+..+|. +++.+..+.. ...+.++...+++. ++++
T Consensus       247 ~~~~~~---~~~~~~~~~~~~~g-~l~v~t~~ggl~~~d~-~g~~~~~~~~~~~~~~~~~~d~~g~-l~~g  311 (330)
T 3hxj_A          247 KWRFKT---GKRIESSPVIGNTD-TIYFGSYDGHLYAINP-DGTEKWNFETGSWIIATPVIDENGT-IYFG  311 (330)
T ss_dssp             EEEEEC---SSCCCSCCEECTTS-CEEEECTTCEEEEECT-TSCEEEEEECSSCCCSCCEECTTCC-EEEE
T ss_pred             eEEeeC---CCCccccceEcCCC-eEEEecCCCCEEEECC-CCcEEEEEEcCCccccceEEcCCCE-EEEE
Confidence            433221   12223344555565 4777888888999996 6776666543 23355555555544 4443

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=98.05  E-value=0.00054  Score=62.41  Aligned_cols=80  Identities=19%  Similarity=0.172  Sum_probs=51.6

Q ss_pred             CCCeEEEEECCCCceeeecccccCceeceEEEEECCCCCEEEEeeCCCcEEEEECCCCcEEEEEecCCceeE--EEeccC
Q 021399          166 EDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTERPVNA--VTMSPL  243 (313)
Q Consensus       166 ~d~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~--~~~~p~  243 (313)
                      .++.|..||+.+++.+=+....    ..+..-.....+..++.++.|+.++.||.++++.+-++.....+.+  +.+..+
T Consensus       464 ~~G~l~A~D~~tG~~~W~~~~~----~~~~~g~~~tagglvf~g~~dg~l~A~D~~tG~~lW~~~~~~g~~a~P~~y~~~  539 (582)
T 1flg_A          464 HVGSLRAMDPVSGKVVWEHKEH----LPLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKELWKFQTGSGIVSPPITWEQD  539 (582)
T ss_dssp             CSEEEEEECTTTCCEEEEEEES----SCCCSCCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEET
T ss_pred             CcceEEEEECCCCCEEEEecCC----CCCcccceEeCCCEEEEECCCCcEEEEECCCCCEEEEecCCCCcccCceEEEEC
Confidence            4688999999998865332211    1111111112356788899999999999999999988876544333  555566


Q ss_pred             CCEEEE
Q 021399          244 LDHVVL  249 (313)
Q Consensus       244 ~~~~~~  249 (313)
                      +.+.++
T Consensus       540 G~qYv~  545 (582)
T 1flg_A          540 GEQYLG  545 (582)
T ss_dssp             TEEEEE
T ss_pred             CEEEEE
Confidence            654443

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=98.03  E-value=0.0098  Score=56.29  Aligned_cols=268  Identities=10%  Similarity=0.079  Sum_probs=145.7

Q ss_pred             eeEEEEccCCCEEEEeeCCCCeEEEeCCCCcEEEEe-cCCCCceEEEEECCCCCeEEEeeCCCcEEEEECCCCeEEEEec
Q 021399           13 LTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTY-RGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFN   91 (313)
Q Consensus        13 v~~~~fs~~g~~l~s~s~d~~i~iw~~~~~~~~~~~-~~H~~~V~~~~~~~~~~~l~s~s~D~~v~vWd~~~~~~~~~~~   91 (313)
                      |.++..+++|...+ +..++-+..|+.++++..... ..+...|.++...+++++.+ |..++-+..||..+++......
T Consensus       175 i~~i~~d~~g~lwi-gt~~~Gl~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lwi-gt~~~Gl~~~~~~~~~~~~~~~  252 (795)
T 4a2l_A          175 IASTLYRQGDQIYI-GTSTDGLYTYSITQKTFEKVIPILGTKQIQAILQQSPTRIWV-ATEGAGLFLINPKTKEIKNYLH  252 (795)
T ss_dssp             CEEEEEEETTEEEE-EESSSCEEEEETTTCCEEECC----CCCEEEEEEEETTEEEE-EEBSSCEEEEETTTTEEEEECC
T ss_pred             eEEEEECCCCCEEE-EECCCCEEEEeCCCCeEEEecCCCCCCeeEEEEEcCCCCEEE-EECCCCeEEEeCCCCeEEEeec
Confidence            78888888887666 555445788888776643321 12356788888877776555 4444458889988765443221


Q ss_pred             C--------CCCeeEEEeecCCeEEEEECCCceeccccc-eeeeeeeCCCCCCCceEEEecCCCCceEEEEEccCCCEEE
Q 021399           92 F--------DSPARSVDFAVGDKLAVITTDPFMELNSAI-HVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTII  162 (313)
Q Consensus        92 ~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~  162 (313)
                      .        ...+.++.....+.+.++........+... .............       ......|.++...+++. +.
T Consensus       253 ~~~~~~~l~~~~i~~i~~d~~g~lWigt~~Gl~~~~~~~~~~~~~~~~~~~~~-------~l~~~~i~~i~~D~~g~-lW  324 (795)
T 4a2l_A          253 SPSNPKSISSNYIRSLAMDSQNRLWIGTFNDLNIYHEGTDSFASYSSNPVENG-------SLSQRSVRSIFMDSQGG-MW  324 (795)
T ss_dssp             CTTCTTSCSCSBEEEEEECTTSCEEEEESSCEEEEETTTTEEEEECCCTTSTT-------SCSSSCEEEEEECTTSC-EE
T ss_pred             CCCCccccCCCeEEEEEEcCCCCEEEEeCChhheEcCCCCeEEEEecCCCCCC-------CCCCCcEEEEEEeCCcC-EE
Confidence            1        123445544455555555433222221110 0000100000000       01235688888888777 55


Q ss_pred             EeeCCCeEEEEECCCCceeeeccc----ccCceeceEEEEECCCCCEEEEeeCCCcEEEEECCCCcEEEEEe--------
Q 021399          163 SAGEDAIVRIWDTETGKLLKESDK----ETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYV--------  230 (313)
Q Consensus       163 t~~~d~~i~lwd~~~~~~~~~~~~----~~~h~~~v~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~--------  230 (313)
                      .|+.++-|..++...... .....    ..-....|.++...++|. |-.|+.++-|..||.++++...-..        
T Consensus       325 igt~~~Gl~~~~~~~~~~-~~~~~~~~~~~l~~~~V~~i~~d~~g~-lWiGt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~  402 (795)
T 4a2l_A          325 LGTYFGGLNYYHPIRNRF-KNIRNIPYKNSLSDNVVSCIVEDKDKN-LWIGTNDGGLNLYNPITQRFTSYTLQEDESARG  402 (795)
T ss_dssp             EEESSSCEEEECGGGGSS-EEECCCTTSSSCSCSSEEEEEECTTSC-EEEEESSSCEEEECTTTCCEEEECCC------C
T ss_pred             EEECCCCeEEeCCCcccc-eEEcCCCCCCCCCCCeeEEEEECCCCC-EEEEECCCCeEEEcCCCCcEEEEecCCCCcccC
Confidence            677777788998755432 11111    011245699999998887 5557777779999988765432211        


Q ss_pred             -cCCceeEEEeccCCCEEEEcccccCceeEeeccCCCceeeeeeehhhhhhhccccccccceeEEEECCCCCe
Q 021399          231 -TERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKR  302 (313)
Q Consensus       231 -~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~fspdgk~  302 (313)
                       ....+.+++..+.+..+.++....  -+..+|...+.+.  .+....    ..  .....|.++...++|+.
T Consensus       403 l~~~~v~~i~~d~~g~~lWigt~~~--Gl~~~d~~~~~~~--~~~~~~----~~--l~~~~v~~i~~d~~g~l  465 (795)
T 4a2l_A          403 IGSNNIKAVYVDEKKSLVYIGTHAG--GLSILHRNSGQVE--NFNQRN----SQ--LVNENVYAILPDGEGNL  465 (795)
T ss_dssp             CSCSCEEEEEEETTTTEEEEEETTT--EEEEEETTTCCEE--EECTTT----SC--CSCSCEEEEEECSSSCE
T ss_pred             CCCccEEEEEEcCCCCEEEEEeCcC--ceeEEeCCCCcEE--EeecCC----CC--cCCCeeEEEEECCCCCE
Confidence             123467777776665355543211  2445555544432  111100    00  13457888888877775

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=97.98  E-value=0.00098  Score=61.73  Aligned_cols=75  Identities=4%  Similarity=0.076  Sum_probs=50.1

Q ss_pred             eeEEEEccCCCEEEEeeC-CCCeEEEeCCCCcEEEEecCCCCce-EEEEECCCCCeEEEee-CC-----CcEEEEECCCC
Q 021399           13 LTYLKYNKDGDLLFSCAK-DHTPTVWFADNGERLGTYRGHNGAV-WCCDVSRDSMTLITGS-AD-----QTAKLWNVETG   84 (313)
Q Consensus        13 v~~~~fs~~g~~l~s~s~-d~~i~iw~~~~~~~~~~~~~H~~~V-~~~~~~~~~~~l~s~s-~D-----~~v~vWd~~~~   84 (313)
                      ..++++.++|+.++.|+. +..+.+||..+.+-...-.-+...- .++++.+++++++.|| .+     ..+.+||+.+.
T Consensus       245 ~~~~~~~~~g~lyv~GG~~~~~v~~yd~~t~~W~~~~~~~~~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~  324 (656)
T 1k3i_A          245 CPGISMDGNGQIVVTGGNDAKKTSLYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSK  324 (656)
T ss_dssp             SCEEEECTTSCEEEECSSSTTCEEEEEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTT
T ss_pred             cccccCCCCCCEEEeCCCCCCceEEecCcCCceeECCCCCccccccceEEecCCeEEEEeCcccCCcccccceEeCCCCC
Confidence            345777889999999984 5689999988775332211111111 2344556899999988 44     57999999887


Q ss_pred             eEE
Q 021399           85 AQL   87 (313)
Q Consensus        85 ~~~   87 (313)
                      +-.
T Consensus       325 ~W~  327 (656)
T 1k3i_A          325 TWT  327 (656)
T ss_dssp             EEE
T ss_pred             cce
Confidence            533

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=97.98  E-value=0.013  Score=55.56  Aligned_cols=269  Identities=9%  Similarity=0.024  Sum_probs=149.8

Q ss_pred             ccceeEEEEccCCCEEEEeeCCCCeEEEeCCCCcEEEEecC-------CCCceEEEEECCCCCeEEEeeCCCcEEEEECC
Q 021399           10 ERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRG-------HNGAVWCCDVSRDSMTLITGSADQTAKLWNVE   82 (313)
Q Consensus        10 ~~~v~~~~fs~~g~~l~s~s~d~~i~iw~~~~~~~~~~~~~-------H~~~V~~~~~~~~~~~l~s~s~D~~v~vWd~~   82 (313)
                      ...|.++..+++|.+.+....+| +.+||..+++.......       ....|.++...++|++.+ |..+ -+.+||..
T Consensus       214 ~~~i~~i~~d~~g~lwigt~~~G-l~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi-gt~~-Gl~~~~~~  290 (795)
T 4a2l_A          214 TKQIQAILQQSPTRIWVATEGAG-LFLINPKTKEIKNYLHSPSNPKSISSNYIRSLAMDSQNRLWI-GTFN-DLNIYHEG  290 (795)
T ss_dssp             CCCEEEEEEEETTEEEEEEBSSC-EEEEETTTTEEEEECCCTTCTTSCSCSBEEEEEECTTSCEEE-EESS-CEEEEETT
T ss_pred             CCeeEEEEEcCCCCEEEEECCCC-eEEEeCCCCeEEEeecCCCCccccCCCeEEEEEEcCCCCEEE-EeCC-hhheEcCC
Confidence            45678888888887766543444 78889877654332211       135699999988887554 3444 58889988


Q ss_pred             CCeEEEEecC--------CCCeeEEEeecCCeEEEEECC-Cceeccccce-eeeeeeCCCCCCCceEEEecCCCCceEEE
Q 021399           83 TGAQLFTFNF--------DSPARSVDFAVGDKLAVITTD-PFMELNSAIH-VKRIARDPADQGGESVLILKGPQGRINRA  152 (313)
Q Consensus        83 ~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~~~  152 (313)
                      +++.......        ...+.++.....+.+.+++.. .......... ..........  .      ......|.++
T Consensus       291 ~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~--~------~l~~~~V~~i  362 (795)
T 4a2l_A          291 TDSFASYSSNPVENGSLSQRSVRSIFMDSQGGMWLGTYFGGLNYYHPIRNRFKNIRNIPYK--N------SLSDNVVSCI  362 (795)
T ss_dssp             TTEEEEECCCTTSTTSCSSSCEEEEEECTTSCEEEEESSSCEEEECGGGGSSEEECCCTTS--S------SCSCSSEEEE
T ss_pred             CCeEEEEecCCCCCCCCCCCcEEEEEEeCCcCEEEEECCCCeEEeCCCcccceEEcCCCCC--C------CCCCCeeEEE
Confidence            7765433211        123455555555556555432 2222211110 0001000000  0      0123457788


Q ss_pred             EEccCCCEEEEeeCCCeEEEEECCCCceeeeccccc------CceeceEEEEECCCCCEEEEeeCCCcEEEEECCCCcEE
Q 021399          153 VWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKET------GHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELI  226 (313)
Q Consensus       153 ~~~~~~~~i~t~~~d~~i~lwd~~~~~~~~~~~~~~------~h~~~v~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~  226 (313)
                      ...+++. +..|+.++-|..||..++... ......      .....|.+++..++|..|-.|+.++-|..||.++++..
T Consensus       363 ~~d~~g~-lWiGt~~~Gl~~~~~~~~~~~-~~~~~~~~~~~~l~~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~~~  440 (795)
T 4a2l_A          363 VEDKDKN-LWIGTNDGGLNLYNPITQRFT-SYTLQEDESARGIGSNNIKAVYVDEKKSLVYIGTHAGGLSILHRNSGQVE  440 (795)
T ss_dssp             EECTTSC-EEEEESSSCEEEECTTTCCEE-EECCC------CCSCSCEEEEEEETTTTEEEEEETTTEEEEEETTTCCEE
T ss_pred             EECCCCC-EEEEECCCCeEEEcCCCCcEE-EEecCCCCcccCCCCccEEEEEEcCCCCEEEEEeCcCceeEEeCCCCcEE
Confidence            7777776 556787777999998765432 221110      12357899999888885667777778999999887643


Q ss_pred             EEEec------CCceeEEEeccCCCEEEEcccccCceeEeeccCCCceeeeeeehhhhhhhccccccccceeEEEECCCC
Q 021399          227 KTYVT------ERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDG  300 (313)
Q Consensus       227 ~~~~~------~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~fspdg  300 (313)
                       .+..      ...+.++...+.+. +.++.. .+  +..++...+.+...  ...  ....  .-....|.++...++|
T Consensus       441 -~~~~~~~~l~~~~v~~i~~d~~g~-lwigt~-~G--l~~~~~~~~~~~~~--~~~--~~~~--~~~~~~i~~i~~d~~g  509 (795)
T 4a2l_A          441 -NFNQRNSQLVNENVYAILPDGEGN-LWLGTL-SA--LVRFNPEQRSFTTI--EKE--KDGT--PVVSKQITTLFRDSHK  509 (795)
T ss_dssp             -EECTTTSCCSCSCEEEEEECSSSC-EEEEES-SC--EEEEETTTTEEEEC--CBC--TTCC--BCCCCCEEEEEECTTC
T ss_pred             -EeecCCCCcCCCeeEEEEECCCCC-EEEEec-Cc--eeEEeCCCCeEEEc--ccc--cccc--ccCCceEEEEEECCCC
Confidence             3321      23577777766655 444332 22  44555544443211  100  0000  1124578888888888


Q ss_pred             Ce
Q 021399          301 KR  302 (313)
Q Consensus       301 k~  302 (313)
                      +.
T Consensus       510 ~l  511 (795)
T 4a2l_A          510 RL  511 (795)
T ss_dssp             CE
T ss_pred             CE
Confidence            76

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=97.93  E-value=0.0011  Score=60.30  Aligned_cols=79  Identities=18%  Similarity=0.043  Sum_probs=50.2

Q ss_pred             CCCeEEEEECCCCceeeecccccCceeceEEEEECCCCCEEEEeeCCCcEEEEECCCCcEEEEEecCCcee--EEEeccC
Q 021399          166 EDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTERPVN--AVTMSPL  243 (313)
Q Consensus       166 ~d~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~--~~~~~p~  243 (313)
                      .++.|..||..+++.+-+...    ...+........+..++.++.|+.++.||.++++.+.++.....+.  -+.+.++
T Consensus       442 ~~g~l~a~D~~tG~~~W~~~~----~~~~~~~~~~t~gg~v~~g~~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~~~~~~  517 (571)
T 2ad6_A          442 EMGQIRAFDLTTGKAKWTKWE----KFAAWGGTLYTKGGLVWYATLDGYLKALDNKDGKELWNFKMPSGGIGSPMTYSFK  517 (571)
T ss_dssp             CCEEEEEECTTTCCEEEEEEE----SSCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEET
T ss_pred             CCCeEEEEECCCCCEEEEecC----CCCccceeEEECCCEEEEEcCCCeEEEEECCCCCEEEEEeCCCCcEeeeEEEEEC
Confidence            468899999998876544321    1112222222345677889999999999999999998886544332  2334455


Q ss_pred             CCEEE
Q 021399          244 LDHVV  248 (313)
Q Consensus       244 ~~~~~  248 (313)
                      +...+
T Consensus       518 G~~yv  522 (571)
T 2ad6_A          518 GKQYI  522 (571)
T ss_dssp             TEEEE
T ss_pred             CEEEE
Confidence            55443

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=97.87  E-value=0.0012  Score=54.98  Aligned_cols=180  Identities=7%  Similarity=0.115  Sum_probs=109.3

Q ss_pred             cccccccccceeEEEEccCCCEEEEee-CCCCeEEEeCCCCcEEE-EecC----CCC--ceEEEEE---CCCCCeEEEee
Q 021399            3 PILMKGHERPLTYLKYNKDGDLLFSCA-KDHTPTVWFADNGERLG-TYRG----HNG--AVWCCDV---SRDSMTLITGS   71 (313)
Q Consensus         3 ~~~l~~h~~~v~~~~fs~~g~~l~s~s-~d~~i~iw~~~~~~~~~-~~~~----H~~--~V~~~~~---~~~~~~l~s~s   71 (313)
                      .+.+....-...+.+|++...+|..++ ..+.|..|+...+.... .+.+    .+.  .+..+.|   .|++++++...
T Consensus         5 ~i~~~~~~~yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~   84 (334)
T 2p9w_A            5 QIDVKVKNLTPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMK   84 (334)
T ss_dssp             EEEECCTTCCCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEE
T ss_pred             eEEecCcccCCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCCCCcEEEEEc
Confidence            456667777778999998666666666 68999999987664332 3332    121  3578899   68877776533


Q ss_pred             -------------CCCcEEEEECC---CCeEEEEecCCCCeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCC
Q 021399           72 -------------ADQTAKLWNVE---TGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQG  135 (313)
Q Consensus        72 -------------~D~~v~vWd~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  135 (313)
                                   .+..+..+|+.   +++.++......                       ....  ...         
T Consensus        85 ~~~af~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~-----------------------~~~~--~~~---------  130 (334)
T 2p9w_A           85 NAKSFNFADQSSHGASSFHSFNLPLSENSKPVWSVNFEK-----------------------VQDE--FEK---------  130 (334)
T ss_dssp             ETTTTCTTSCCSSSCCEEEEEESSCCTTCCCSEEEESHH-----------------------HHHH--HHH---------
T ss_pred             ccccccccccccCCCCEEEEEcCCcCCCCCEEEEecCcc-----------------------cccc--ccc---------
Confidence                         25667777776   554332211000                       0000  000         


Q ss_pred             CceEEEecC-CCCceEEEEEccCCCEEEEeeCC-CeEEEEECCCCceeeecccc---cCceeceEEEEECCCCCEEEEee
Q 021399          136 GESVLILKG-PQGRINRAVWGPLNRTIISAGED-AIVRIWDTETGKLLKESDKE---TGHKKTITSLAKAADGSHFLTGS  210 (313)
Q Consensus       136 ~~~~~~~~~-~~~~i~~~~~~~~~~~i~t~~~d-~~i~lwd~~~~~~~~~~~~~---~~h~~~v~~~~~s~~~~~l~s~s  210 (313)
                            ..+ .....+.++..++|+.+++++.. +.|...+..-. .+......   .......+.+++.|+|+.|+...
T Consensus       131 ------~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~rV~pdG~-~~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~  203 (334)
T 2p9w_A          131 ------KAGKRPFGVVQSAQDRDGNSYVAFALGMPAIARVSADGK-TVSTFAWESGNGGQRPGYSGITFDPHSNKLIAFG  203 (334)
T ss_dssp             ------HHSSCCEEEEEEEECTTSCEEEEEEESSCEEEEECTTSC-CEEEEEECCCCSSSCCSCSEEEEETTTTEEEEES
T ss_pred             ------cccccccCCceeEECCCCCEEEeCCCCCCeEEEEeCCCC-EEeeeeecCCCcccccCcceEEEeCCCCEEEEEc
Confidence                  000 01235677788888888888877 87777776532 22221110   11223466889999999888887


Q ss_pred             CCCcEEEEECCCC
Q 021399          211 LDKSAKLWDARTL  223 (313)
Q Consensus       211 ~dg~i~iwd~~~~  223 (313)
                      ..|.+.-+|+++.
T Consensus       204 ~~g~L~~fD~~~p  216 (334)
T 2p9w_A          204 GPRALTAFDVSKP  216 (334)
T ss_dssp             SSSSEEEEECSSS
T ss_pred             CCCeEEEEcCCCC
Confidence            7999999998853

>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}

Probab=97.83  E-value=0.00046  Score=64.98  Aligned_cols=73  Identities=22%  Similarity=0.164  Sum_probs=44.9

Q ss_pred             EEEEccCCCEEEEeeCC-----CeEEEEECCCCceeeecccccCceeceEEEEECCCCCEEEEeeC---CCcEEEEECCC
Q 021399          151 RAVWGPLNRTIISAGED-----AIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSL---DKSAKLWDART  222 (313)
Q Consensus       151 ~~~~~~~~~~i~t~~~d-----~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~---dg~i~iwd~~~  222 (313)
                      .+.|+|+++.|+....+     ..|+++++.++..................+.|+|||++|+..+.   ...|.++|+.+
T Consensus       225 ~~~WspDg~~l~y~~~d~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~  304 (751)
T 2xe4_A          225 EIVWGPDHTSLFYVTKDETLRENKVWRHVMGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRK  304 (751)
T ss_dssp             CCEECSSTTEEEEEEECTTCCEEEEEEEETTSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSS
T ss_pred             eEEEecCCCEEEEEEECCCCCCCEEEEEECCCCchhcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCC
Confidence            35688888777766554     36888888765321111000012234567899999999886653   34688889887


Q ss_pred             C
Q 021399          223 L  223 (313)
Q Consensus       223 ~  223 (313)
                      +
T Consensus       305 ~  305 (751)
T 2xe4_A          305 G  305 (751)
T ss_dssp             C
T ss_pred             C
Confidence            5

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=97.73  E-value=0.025  Score=51.64  Aligned_cols=71  Identities=11%  Similarity=0.066  Sum_probs=51.2

Q ss_pred             CCEEEEeeC-CCCeEEEeC-CCCcEEEEecCCCCc-----------eEEEEECCCCCe----EEEeeCCCcEEEEECCCC
Q 021399           22 GDLLFSCAK-DHTPTVWFA-DNGERLGTYRGHNGA-----------VWCCDVSRDSMT----LITGSADQTAKLWNVETG   84 (313)
Q Consensus        22 g~~l~s~s~-d~~i~iw~~-~~~~~~~~~~~H~~~-----------V~~~~~~~~~~~----l~s~s~D~~v~vWd~~~~   84 (313)
                      +..++.++. ++.|.-+|. ++++.+.+++-....           ...+++.|.+..    ++.++.|+.+..+|..++
T Consensus        62 ~g~vyv~~~~~~~v~AlD~~~tG~~lW~~~~~~~~~~~~~~~~~~~~~g~av~p~~g~~~~rV~v~t~dg~l~AlDa~TG  141 (599)
T 1w6s_A           62 DGKMYIHTSFPNNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALILKTQLDGNVAALNAETG  141 (599)
T ss_dssp             TTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCCCCEEECCCSSSCCEEEEECTTSEEEEEETTTC
T ss_pred             CCEEEEEeCCCCEEEEEeCCCCCcEEEEECCCCCccccccccccccccceEEEecCCcceeEEEEEcCCCEEEEEECCCC
Confidence            456777777 889999999 899998887643221           122455333334    777889999999999999


Q ss_pred             eEEEEecC
Q 021399           85 AQLFTFNF   92 (313)
Q Consensus        85 ~~~~~~~~   92 (313)
                      +.++....
T Consensus       142 ~~~W~~~~  149 (599)
T 1w6s_A          142 ETVWKVEN  149 (599)
T ss_dssp             CEEEEEEC
T ss_pred             CEEEeecC
Confidence            99887653

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=97.70  E-value=0.016  Score=48.22  Aligned_cols=197  Identities=12%  Similarity=0.093  Sum_probs=105.5

Q ss_pred             ceeEEEEcc-CCCEEEEeeCCCCeEEEeCCCCcEEEEec----CC-CCceEEEEECC-CCCeEEEeeC------------
Q 021399           12 PLTYLKYNK-DGDLLFSCAKDHTPTVWFADNGERLGTYR----GH-NGAVWCCDVSR-DSMTLITGSA------------   72 (313)
Q Consensus        12 ~v~~~~fs~-~g~~l~s~s~d~~i~iw~~~~~~~~~~~~----~H-~~~V~~~~~~~-~~~~l~s~s~------------   72 (313)
                      .+..+++++ +|.+++ +...+.+..+|.++++. ..+.    +. -.....+++.+ +|++.++-..            
T Consensus        81 ~p~gi~~~~~~g~l~v-~d~~~~i~~~d~~~g~~-~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~  158 (322)
T 2fp8_A           81 RTYDISYNLQNNQLYI-VDCYYHLSVVGSEGGHA-TQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIM  158 (322)
T ss_dssp             CEEEEEEETTTTEEEE-EETTTEEEEECTTCEEC-EEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHH
T ss_pred             CCceEEEcCCCCcEEE-EECCCCEEEEeCCCCEE-EEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceeh
Confidence            478899998 665544 54445577888665532 2221    11 13467899999 8987776432            


Q ss_pred             -----CCcEEEEECCCCeEEEEecCCCCeeEEEeecCCe-EEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCC
Q 021399           73 -----DQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDK-LAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQ  146 (313)
Q Consensus        73 -----D~~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  146 (313)
                           ++.|..||..+++.............+.+.+++. +.+.....       ..+..+...........+.. . ..
T Consensus       159 ~~~~~~g~v~~~d~~~~~~~~~~~~~~~p~gia~~~dg~~lyv~d~~~-------~~I~~~~~~~~~~~~~~~~~-~-~~  229 (322)
T 2fp8_A          159 DTSDKTGRLIKYDPSTKETTLLLKELHVPGGAEVSADSSFVLVAEFLS-------HQIVKYWLEGPKKGTAEVLV-K-IP  229 (322)
T ss_dssp             HHTCCCEEEEEEETTTTEEEEEEEEESCCCEEEECTTSSEEEEEEGGG-------TEEEEEESSSTTTTCEEEEE-E-CS
T ss_pred             cccCCCceEEEEeCCCCEEEEeccCCccCcceEECCCCCEEEEEeCCC-------CeEEEEECCCCcCCccceEE-e-CC
Confidence                 3678888987766433222112334566777655 33332210       11111111100001111111 1 12


Q ss_pred             CceEEEEEccCCCEEEEeeC----------CCeEEEEECCCCceeeecccccCc-eeceEEEEECCCCCEEEEeeCCCcE
Q 021399          147 GRINRAVWGPLNRTIISAGE----------DAIVRIWDTETGKLLKESDKETGH-KKTITSLAKAADGSHFLTGSLDKSA  215 (313)
Q Consensus       147 ~~i~~~~~~~~~~~i~t~~~----------d~~i~lwd~~~~~~~~~~~~~~~h-~~~v~~~~~s~~~~~l~s~s~dg~i  215 (313)
                      + ...+++.++|+.+++...          .+.|..+|.. ++.+..+....+. -..+..+++ .++...++....+.|
T Consensus       230 g-P~gi~~d~~G~l~va~~~~~~~~~~~~~~~~v~~~d~~-G~~~~~~~~~~g~~~~~~~~~~~-~~g~L~v~~~~~~~i  306 (322)
T 2fp8_A          230 N-PGNIKRNADGHFWVSSSEELDGNMHGRVDPKGIKFDEF-GNILEVIPLPPPFAGEHFEQIQE-HDGLLYIGTLFHGSV  306 (322)
T ss_dssp             S-EEEEEECTTSCEEEEEEEETTSSTTSCEEEEEEEECTT-SCEEEEEECCTTTTTSCCCEEEE-ETTEEEEECSSCSEE
T ss_pred             C-CCCeEECCCCCEEEEecCcccccccCCCccEEEEECCC-CCEEEEEECCCCCccccceEEEE-eCCEEEEeecCCCce
Confidence            2 567888999987766544          4678888874 5655544322211 133555555 456666666667888


Q ss_pred             EEEECCC
Q 021399          216 KLWDART  222 (313)
Q Consensus       216 ~iwd~~~  222 (313)
                      ..++++.
T Consensus       307 ~~~~~~~  313 (322)
T 2fp8_A          307 GILVYDK  313 (322)
T ss_dssp             EEEEC--
T ss_pred             EEEeccc
Confidence            8888764

>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A

Probab=97.58  E-value=0.025  Score=47.47  Aligned_cols=189  Identities=14%  Similarity=0.221  Sum_probs=109.7

Q ss_pred             CCCEEEEeeCCCCeEEEeCCCCcEEEEecCCCCceEEEEECCC----CC---e-EEEeeC--CCcEEEEEC--CCCeEEE
Q 021399           21 DGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRD----SM---T-LITGSA--DQTAKLWNV--ETGAQLF   88 (313)
Q Consensus        21 ~g~~l~s~s~d~~i~iw~~~~~~~~~~~~~H~~~V~~~~~~~~----~~---~-l~s~s~--D~~v~vWd~--~~~~~~~   88 (313)
                      ...+++...+.+-+.+||+ +|+.+..+..  +.++.+.+-|+    |+   + ++|.-.  +++|.++++  .+++ +.
T Consensus        39 ~~s~ii~t~k~~gL~Vydl-~G~~l~~~~~--g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~-l~  114 (355)
T 3amr_A           39 QNSKLITTNKKSGLVVYSL-DGKMLHSYNT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGT-LQ  114 (355)
T ss_dssp             GGCEEEEEETTTEEEEEET-TSCEEEEECC--SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCC-EE
T ss_pred             CccEEEEEcCCCCEEEEcC-CCcEEEEccC--CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCc-ee
Confidence            4456777788889999999 8988888864  55666665552    22   2 333333  578999966  3332 11


Q ss_pred             EecC-CCCeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEE--ccC-CC-EEEE
Q 021399           89 TFNF-DSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVW--GPL-NR-TIIS  163 (313)
Q Consensus        89 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--~~~-~~-~i~t  163 (313)
                      .... ..+.                               .               .....+..+++  +|. +. ++++
T Consensus       115 ~i~~~~~pv-------------------------------~---------------t~~~~pyGlcly~~~~~g~~yafV  148 (355)
T 3amr_A          115 SMTDPDHPI-------------------------------A---------------TAINEVYGFTLYHSQKTGKYYAMV  148 (355)
T ss_dssp             ECSCTTSCE-------------------------------E---------------CCCSSCCCEEEEECTTTCCEEEEE
T ss_pred             eccccccCc-------------------------------C---------------CCCCCeeEEEEEecCCCCcEEEEE
Confidence            1100 0000                               0               00011222333  443 32 4666


Q ss_pred             eeCCCeEEEEECC-------CCceeeecccccCceeceEEEEECCCCCEEEEeeCCCcEEEEECC-----CCcEEEEEec
Q 021399          164 AGEDAIVRIWDTE-------TGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDAR-----TLELIKTYVT  231 (313)
Q Consensus       164 ~~~d~~i~lwd~~-------~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~dg~i~iwd~~-----~~~~~~~~~~  231 (313)
                      ...++.+..|++.       +.+.++++..    ...+-.+...+....|+.+-.|..|..++.+     +.+.+..+..
T Consensus       149 ~~k~G~~~q~~l~~~~~g~~~~~lVR~f~l----gsq~EgcvvDd~~g~Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~~  224 (355)
T 3amr_A          149 TGKEGEFEQYELKADKNGYISGKKVRAFKM----NSQTEGMAADDEYGRLYIAEEDEAIWKFSAEPDGGSNGTVIDRADG  224 (355)
T ss_dssp             ECSSSEEEEEEEEECTTSCEEEEEEEEEEC----SSCEEEEEEETTTTEEEEEETTTEEEEEECSTTSCSCCEEEEEBSS
T ss_pred             ECCCCeEEEEEEEeCCCCcccceEEEEecC----CCCcceEEEcCCCCeEEEecccceEEEEeCCcCCCCCceEEEEecC
Confidence            7778999999872       2344555532    2456677788888899999998776666755     3445554432


Q ss_pred             C---CceeEEEe--ccCCC-EEEEcccccCceeEeeccC
Q 021399          232 E---RPVNAVTM--SPLLD-HVVLGGGQDASAVTTTDHR  264 (313)
Q Consensus       232 ~---~~~~~~~~--~p~~~-~~~~~~~~~~~~~~~~~~~  264 (313)
                      .   ..+..+++  .+++. +++++ +.....+.++|..
T Consensus       225 g~l~aDvEGLai~~~~~g~gyLivS-sQG~~s~~Vydr~  262 (355)
T 3amr_A          225 RHLTRDIEGLTIYYAADGKGYLMAS-SQGNSSYAIYDRQ  262 (355)
T ss_dssp             SSBCSCEEEEEEEECGGGCEEEEEE-EGGGTEEEEEESS
T ss_pred             CccccCcceEEEEecCCCCEEEEEE-cCCCCEEEEEECC
Confidence            2   35677777  56666 45544 4444556677765

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=97.53  E-value=0.027  Score=46.52  Aligned_cols=238  Identities=9%  Similarity=0.010  Sum_probs=118.3

Q ss_pred             CcEEEEecCCCCceEEEEECCCCCeEEEeeCCCcEEEEECCCCeEEEEecCCCCeeEEEeecCCeEEEEECCCceecccc
Q 021399           42 GERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSA  121 (313)
Q Consensus        42 ~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  121 (313)
                      .+.+..+... .....++|+++++++++-..++.|..||.... .............+.+.+++.+.+.....     ..
T Consensus        22 ~~~~~~~p~~-~~pegia~~~~g~lyv~d~~~~~I~~~d~~g~-~~~~~~~~~~p~gia~~~dG~l~vad~~~-----~~   94 (306)
T 2p4o_A           22 AKIITSFPVN-TFLENLASAPDGTIFVTNHEVGEIVSITPDGN-QQIHATVEGKVSGLAFTSNGDLVATGWNA-----DS   94 (306)
T ss_dssp             EEEEEEECTT-CCEEEEEECTTSCEEEEETTTTEEEEECTTCC-EEEEEECSSEEEEEEECTTSCEEEEEECT-----TS
T ss_pred             ceEeEeCCCC-CCcceEEECCCCCEEEEeCCCCeEEEECCCCc-eEEEEeCCCCceeEEEcCCCcEEEEeccC-----Cc
Confidence            3455566433 45678999999987777668899999998764 33333444456677777766665543210     00


Q ss_pred             ceeeeeeeCCCCCCCceEEEec-CCCCceEEEEEccCCCEEEEeeCCCeEEEEECCCCc--eeeecc-----cccCceec
Q 021399          122 IHVKRIARDPADQGGESVLILK-GPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGK--LLKESD-----KETGHKKT  193 (313)
Q Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~i~t~~~d~~i~lwd~~~~~--~~~~~~-----~~~~h~~~  193 (313)
                      ..+..+.  ..  .+....... ........++..+.+..+++-..++.|..+|...++  ......     .....-..
T Consensus        95 ~~v~~~d--~~--~g~~~~~~~~~~~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~  170 (306)
T 2p4o_A           95 IPVVSLV--KS--DGTVETLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPA  170 (306)
T ss_dssp             CEEEEEE--CT--TSCEEEEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCS
T ss_pred             ceEEEEc--CC--CCeEEEEEeCCCccccCcccccCCCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCc
Confidence            0011110  00  111111111 111112333334444444544467889999986542  110000     00011122


Q ss_pred             eEEEEECCCCCEEE-EeeCCCcEEEEECCC-CcE--EEEEecCCceeEEEeccCCCEEEEcccccCceeEeeccCCCcee
Q 021399          194 ITSLAKAADGSHFL-TGSLDKSAKLWDART-LEL--IKTYVTERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFE  269 (313)
Q Consensus       194 v~~~~~s~~~~~l~-s~s~dg~i~iwd~~~-~~~--~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~  269 (313)
                      ...+  ++++.+|. +-...+.|..+|++. ++.  ...+........+++.+++.. +++... .+.+..++.. ++..
T Consensus       171 pngi--s~dg~~lyv~d~~~~~I~~~~~~~~g~~~~~~~~~~~~~P~gi~vd~dG~l-~va~~~-~~~V~~~~~~-G~~~  245 (306)
T 2p4o_A          171 ANGL--KRFGNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVEQTNIDDFAFDVEGNL-YGATHI-YNSVVRIAPD-RSTT  245 (306)
T ss_dssp             EEEE--EEETTEEEEEETTTTEEEEEEBCTTSCBCCCEEEEESCCCSSEEEBTTCCE-EEECBT-TCCEEEECTT-CCEE
T ss_pred             CCCc--CcCCCEEEEEeCCCCEEEEEEeCCCCCCCccEEEeccCCCCCeEECCCCCE-EEEeCC-CCeEEEECCC-CCEE
Confidence            3444  67776554 455678899999875 321  122211223566788887754 444322 2223334432 2211


Q ss_pred             eeeeehhhhhhhccccccccceeEEEEC---CCCCeeEE
Q 021399          270 AKFFDKILQEEIGGVKGHFGPINALAFN---PDGKRYGF  305 (313)
Q Consensus       270 ~~~~~~~~~~~~~~~~~h~~~V~~~~fs---pdgk~~~~  305 (313)
                      .          +..........++++|.   ||++.+-.
T Consensus       246 ~----------~~~~~~~~~~p~~~a~~g~~~d~~~LyV  274 (306)
T 2p4o_A          246 I----------IAQAEQGVIGSTAVAFGQTEGDCTAIYV  274 (306)
T ss_dssp             E----------EECGGGTCTTEEEEEECCSTTTTTEEEE
T ss_pred             E----------EeecccccCCceEEEEecccCCCCEEEE
Confidence            0          00111112457899999   89887643

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=97.40  E-value=0.057  Score=47.08  Aligned_cols=154  Identities=11%  Similarity=0.092  Sum_probs=80.2

Q ss_pred             cceeEEEEcc-CCCEEEEeeCCCCeEEEeCCCCcEEEEecCCCCceEEEEECCCCCeEEEeeC-CC----cEEEEECCCC
Q 021399           11 RPLTYLKYNK-DGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSA-DQ----TAKLWNVETG   84 (313)
Q Consensus        11 ~~v~~~~fs~-~g~~l~s~s~d~~i~iw~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~-D~----~v~vWd~~~~   84 (313)
                      .....++++| ++..|+.+...+.|+.+|.+.+...... ........++|+++++.++.+.. ++    .+.+.+....
T Consensus       137 ~~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~~~~-~~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~~g~  215 (430)
T 3tc9_A          137 GGAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVSTVY-SGLSKVRTICWTHEADSMIITNDQNNNDRPNNYILTRESG  215 (430)
T ss_dssp             SCCCEEEEETTEEEEEEEEEBTEEEEEEETTTTEEEEEE-CCCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEGGGT
T ss_pred             CCCCEEEECCCCCCeEEEEeCCCcEEEEECCCCEEEEEe-cCCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeCCCc
Confidence            3567899998 4566666665588888998776644333 33455788999999995544443 22    2333332221


Q ss_pred             eE-EEEecCCCCeeEEEeec-CCeEEEEECCCceeccccceeeeeeeCCCCCCCce-EEEecCCCCceEEEEEccCCC-E
Q 021399           85 AQ-LFTFNFDSPARSVDFAV-GDKLAVITTDPFMELNSAIHVKRIARDPADQGGES-VLILKGPQGRINRAVWGPLNR-T  160 (313)
Q Consensus        85 ~~-~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~i~~~~~~~~~~-~  160 (313)
                      .. ...+........+.+.+ ++.+.+.....       .++..+..+    .... ..........-..++++|+++ .
T Consensus       216 ~~~~~~l~~~~~p~giavdp~~g~lyv~d~~~-------~~V~~~~~~----~~~~~~~~~~~~~~~P~gia~~pdG~~l  284 (430)
T 3tc9_A          216 FKVITELTKGQNCNGAETHPINGELYFNSWNA-------GQVFRYDFT----TQETTPLFTIQDSGWEFHIQFHPSGNYA  284 (430)
T ss_dssp             SCSEEEEEECSSCCCEEECTTTCCEEEEETTT-------TEEEEEETT----TTEEEEEEECSSSSCCEEEEECTTSSEE
T ss_pred             eeeeeeeccCCCceEEEEeCCCCEEEEEECCC-------CEEEEEECC----CCcEEEEEEcCCCCcceeEEEcCCCCEE
Confidence            10 01111112234455666 44444432211       111111110    1111 111111123456789999999 4


Q ss_pred             EEEeeCCCeEEEEECC
Q 021399          161 IISAGEDAIVRIWDTE  176 (313)
Q Consensus       161 i~t~~~d~~i~lwd~~  176 (313)
                      +++-...+.|..++..
T Consensus       285 yv~d~~~~~I~~~~~d  300 (430)
T 3tc9_A          285 YIVVVNQHYILRSDYD  300 (430)
T ss_dssp             EEEETTTTEEEEEEEE
T ss_pred             EEEECCCCEEEEEeCC
Confidence            5555677889998754

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=97.35  E-value=0.11  Score=49.11  Aligned_cols=237  Identities=9%  Similarity=0.027  Sum_probs=128.6

Q ss_pred             cceeEEEEccCCCEEEEeeCCCCeEEEeCCCCcEEEEe---cCCCCceEEEEECCCCCeEEEeeCCCcEEEEECCCCeEE
Q 021399           11 RPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTY---RGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQL   87 (313)
Q Consensus        11 ~~v~~~~fs~~g~~l~s~s~d~~i~iw~~~~~~~~~~~---~~H~~~V~~~~~~~~~~~l~s~s~D~~v~vWd~~~~~~~   87 (313)
                      ..|.++..+++|.+.+ |+.++-+..++..+++.....   ......|.++...+++++.+ |..++-+..+|..+++..
T Consensus       363 ~~v~~i~~d~~g~lWi-gt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~lWi-gt~~~Gl~~~~~~~~~~~  440 (781)
T 3v9f_A          363 KVVSSVCDDGQGKLWI-GTDGGGINVFENGKRVAIYNKENRELLSNSVLCSLKDSEGNLWF-GTYLGNISYYNTRLKKFQ  440 (781)
T ss_dssp             SCEEEEEECTTSCEEE-EEBSSCEEEEETTEEEEECC-----CCCSBEEEEEECTTSCEEE-EETTEEEEEECSSSCEEE
T ss_pred             cceEEEEEcCCCCEEE-EeCCCcEEEEECCCCeEEEccCCCCCCCcceEEEEECCCCCEEE-EeccCCEEEEcCCCCcEE
Confidence            4588998888887665 554555777887654332111   12346799999887776554 666667888998776543


Q ss_pred             EEec---CCCCeeEEEeecCCeEEEEECCCceeccccc-eeeeeeeCCCCCCCceEEEecCCCCceEEEEEccCCCEEEE
Q 021399           88 FTFN---FDSPARSVDFAVGDKLAVITTDPFMELNSAI-HVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIIS  163 (313)
Q Consensus        88 ~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~t  163 (313)
                      ....   ....+.++....++.+.++........+... ........ ..  .      ......|.++...++++.. .
T Consensus       441 ~~~~~~~~~~~v~~i~~d~~g~lwigt~~Gl~~~~~~~~~~~~~~~~-~~--~------~~~~~~i~~i~~d~~g~lW-i  510 (781)
T 3v9f_A          441 IIELEKNELLDVRVFYEDKNKKIWIGTHAGVFVIDLASKKVIHHYDT-SN--S------QLLENFVRSIAQDSEGRFW-I  510 (781)
T ss_dssp             ECCSTTTCCCCEEEEEECTTSEEEEEETTEEEEEESSSSSCCEEECT-TT--S------SCSCSCEEEEEECTTCCEE-E
T ss_pred             EeccCCCCCCeEEEEEECCCCCEEEEECCceEEEeCCCCeEEecccC-cc--c------ccccceeEEEEEcCCCCEE-E
Confidence            3211   1223444444445565555443222221110 00000000 00  0      0113567788888877754 4


Q ss_pred             eeCCCeEEEEECCCCceeeeccccc-CceeceEEEEECCCCCEEEEeeCCCcEEEEECCCCcEEEEEec-----CCceeE
Q 021399          164 AGEDAIVRIWDTETGKLLKESDKET-GHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVT-----ERPVNA  237 (313)
Q Consensus       164 ~~~d~~i~lwd~~~~~~~~~~~~~~-~h~~~v~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~-----~~~~~~  237 (313)
                      |+.++-|..+|..+++. ..+.... .....|.++...++|...++. .+|-+..||.++++. ..+..     ...+.+
T Consensus       511 gt~~~Gl~~~~~~~~~~-~~~~~~~~l~~~~i~~i~~d~~g~lWi~T-~~Glv~~~d~~~~~~-~~~~~~~gl~~~~i~~  587 (781)
T 3v9f_A          511 GTFGGGVGIYTPDMQLV-RKFNQYEGFCSNTINQIYRSSKGQMWLAT-GEGLVCFPSARNFDY-QVFQRKEGLPNTHIRA  587 (781)
T ss_dssp             EESSSCEEEECTTCCEE-EEECTTTTCSCSCEEEEEECTTSCEEEEE-TTEEEEESCTTTCCC-EEECGGGTCSCCCCCE
T ss_pred             EEcCCCEEEEeCCCCeE-EEccCCCCCCCCeeEEEEECCCCCEEEEE-CCCceEEECCCCCcE-EEccccCCCCCceEEE
Confidence            55544477899876543 2222111 124578999999998865544 466548888877653 33321     224667


Q ss_pred             EEeccCCCEEEEcccccCceeEeeccCCC
Q 021399          238 VTMSPLLDHVVLGGGQDASAVTTTDHRAG  266 (313)
Q Consensus       238 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~~  266 (313)
                      +...+.+. +.+++. .+  +..++...+
T Consensus       588 i~~d~~g~-lW~~t~-~G--l~~~~~~~~  612 (781)
T 3v9f_A          588 ISEDKNGN-IWASTN-TG--ISCYITSKK  612 (781)
T ss_dssp             EEECSSSC-EEEECS-SC--EEEEETTTT
T ss_pred             EEECCCCC-EEEEcC-Cc--eEEEECCCC
Confidence            77777665 444432 22  444554443

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=97.16  E-value=0.066  Score=42.99  Aligned_cols=199  Identities=11%  Similarity=0.112  Sum_probs=114.7

Q ss_pred             ccccccceeEEEEccCCCEEEE-eeCCCCeEEEeCCCCcEEEEecC-CCCceEEEEECCCCCeEEEeeCCCcEEEEECCC
Q 021399            6 MKGHERPLTYLKYNKDGDLLFS-CAKDHTPTVWFADNGERLGTYRG-HNGAVWCCDVSRDSMTLITGSADQTAKLWNVET   83 (313)
Q Consensus         6 l~~h~~~v~~~~fs~~g~~l~s-~s~d~~i~iw~~~~~~~~~~~~~-H~~~V~~~~~~~~~~~l~s~s~D~~v~vWd~~~   83 (313)
                      |.|=.+.+..++|+|+++.|++ ...++.|...|.. ++.+.++.- -......+++.+++.++++.-.++.+.++++..
T Consensus        22 l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~~~g~~~vs~E~~~~l~~~~v~~  100 (255)
T 3qqz_A           22 IAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFVKDLETIEYIGDNQFVISDERDYAIYVISLTP  100 (255)
T ss_dssp             CTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSSCSSEEEEEECSTTEEEEEETTTTEEEEEEECT
T ss_pred             CCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCCCCChHHeEEeCCCEEEEEECCCCcEEEEEcCC
Confidence            4455567899999998877765 5567778888887 777776631 124567788888887767655667777777654


Q ss_pred             CeEEEEecCCCCeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEccCCCEEEE
Q 021399           84 GAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIIS  163 (313)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~t  163 (313)
                      ...+....      ...+           .             +..             .......-.++|+|.++.+.+
T Consensus       101 ~~~i~~~~------~~~~-----------~-------------~~~-------------~~~N~g~EGLA~d~~~~~L~v  137 (255)
T 3qqz_A          101 NSEVKILK------KIKI-----------P-------------LQE-------------SPTNCGFEGLAYSRQDHTFWF  137 (255)
T ss_dssp             TCCEEEEE------EEEC-----------C-------------CSS-------------CCCSSCCEEEEEETTTTEEEE
T ss_pred             CCeeeeee------eecc-----------c-------------ccc-------------ccccCCcceEEEeCCCCEEEE
Confidence            32111000      0000           0             000             001223456788888866666


Q ss_pred             eeCCCeEEEEECC---CCceeeeccc----ccCceeceEEEEECCCCCEEEEee-CCCcEEEEECCCCcEEEEEecC---
Q 021399          164 AGEDAIVRIWDTE---TGKLLKESDK----ETGHKKTITSLAKAADGSHFLTGS-LDKSAKLWDARTLELIKTYVTE---  232 (313)
Q Consensus       164 ~~~d~~i~lwd~~---~~~~~~~~~~----~~~h~~~v~~~~~s~~~~~l~s~s-~dg~i~iwd~~~~~~~~~~~~~---  232 (313)
                      +.+.....||...   ....+.....    ...+-..+.++++.|....+..-| .+..+..+|.+ ++.+..+...   
T Consensus       138 a~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~S~l~~dp~tg~lliLS~~s~~L~~~d~~-g~~~~~~~L~~g~  216 (255)
T 3qqz_A          138 FKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTLDDVSGAEFNQQKNTLLVLSHESRALQEVTLV-GEVIGEMSLTKGS  216 (255)
T ss_dssp             EEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSCCCEEEEETTTTEEEEEETTTTEEEEECTT-CCEEEEEECSTTG
T ss_pred             EECcCCceEEEEcccccCCceeeecchhhccccccCCceeEEEcCCCCeEEEEECCCCeEEEEcCC-CCEEEEEEcCCcc
Confidence            6554444444432   1111111100    011234578899998766655555 45677888876 5565555322   


Q ss_pred             -------CceeEEEeccCCCEEEEc
Q 021399          233 -------RPVNAVTMSPLLDHVVLG  250 (313)
Q Consensus       233 -------~~~~~~~~~p~~~~~~~~  250 (313)
                             .....++|.|+++ ++++
T Consensus       217 ~~l~~~~~qpEGia~d~~G~-lyIv  240 (255)
T 3qqz_A          217 RGLSHNIKQAEGVAMDASGN-IYIV  240 (255)
T ss_dssp             GGCSSCCCSEEEEEECTTCC-EEEE
T ss_pred             CCcccccCCCCeeEECCCCC-EEEE
Confidence                   2568999999987 4444

>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A

Probab=97.05  E-value=0.1  Score=43.83  Aligned_cols=135  Identities=11%  Similarity=0.148  Sum_probs=78.9

Q ss_pred             CCeEEEEEC--CCCceeeecccc--c-Cce-eceEEEEE--CCC-CC-EEEEeeCCCcEEEEEC-------CCCcEEEEE
Q 021399          167 DAIVRIWDT--ETGKLLKESDKE--T-GHK-KTITSLAK--AAD-GS-HFLTGSLDKSAKLWDA-------RTLELIKTY  229 (313)
Q Consensus       167 d~~i~lwd~--~~~~~~~~~~~~--~-~h~-~~v~~~~~--s~~-~~-~l~s~s~dg~i~iwd~-------~~~~~~~~~  229 (313)
                      +++|++|++  .++. +..+...  . +-. ..+..+|+  ++. +. +++....+|.+..|++       .+.+.++++
T Consensus        98 ~n~l~vf~iDp~~~~-l~~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f  176 (355)
T 3amr_A           98 KNTIEIYAIDGKNGT-LQSMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAF  176 (355)
T ss_dssp             CCEEEEEEECTTTCC-EEECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEE
T ss_pred             CCeEEEEEECCCCCc-eeeccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEe
Confidence            578999955  4443 4444211  0 011 45566666  664 43 6888888999999987       234677888


Q ss_pred             ecCCceeEEEeccCCCEEEEcccccCceeEeeccCCCceeeeeeehhhhhhhccc-ccc-ccceeEEEE--CCCCCeeEE
Q 021399          230 VTERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGV-KGH-FGPINALAF--NPDGKRYGF  305 (313)
Q Consensus       230 ~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~h-~~~V~~~~f--spdgk~~~~  305 (313)
                      .....+..++..+....++++--+  .-++.++..-..-.       +.+.+..+ .+| ...+-.|++  .++|+.+.|
T Consensus       177 ~lgsq~EgcvvDd~~g~Lyv~eEd--~GIw~~da~p~~~~-------~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLi  247 (355)
T 3amr_A          177 KMNSQTEGMAADDEYGRLYIAEED--EAIWKFSAEPDGGS-------NGTVIDRADGRHLTRDIEGLTIYYAADGKGYLM  247 (355)
T ss_dssp             ECSSCEEEEEEETTTTEEEEEETT--TEEEEEECSTTSCS-------CCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEE
T ss_pred             cCCCCcceEEEcCCCCeEEEeccc--ceEEEEeCCcCCCC-------CceEEEEecCCccccCcceEEEEecCCCCEEEE
Confidence            777788888888888888886322  22554442211000       00111111 112 235666776  778887777


Q ss_pred             EEEEEe
Q 021399          306 LLLQIN  311 (313)
Q Consensus       306 ~~~~~~  311 (313)
                      ..+|++
T Consensus       248 vSsQG~  253 (355)
T 3amr_A          248 ASSQGN  253 (355)
T ss_dssp             EEEGGG
T ss_pred             EEcCCC
Confidence            777764

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=97.02  E-value=0.13  Score=44.01  Aligned_cols=206  Identities=9%  Similarity=-0.053  Sum_probs=112.3

Q ss_pred             cceeEEEEccCCCEEEEe-eCCCCeEEEeCCCCcEEEEecCCCCceEEEEECCC-CCeEEEeeCCCcEEEEECCCCeEEE
Q 021399           11 RPLTYLKYNKDGDLLFSC-AKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRD-SMTLITGSADQTAKLWNVETGAQLF   88 (313)
Q Consensus        11 ~~v~~~~fs~~g~~l~s~-s~d~~i~iw~~~~~~~~~~~~~H~~~V~~~~~~~~-~~~l~s~s~D~~v~vWd~~~~~~~~   88 (313)
                      ..+..++|++.+..|+-+ ...+.|..++.+.+.....+.........+++.+. ++++++-...+.|.+.+++......
T Consensus       116 ~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~~~~  195 (386)
T 3v65_B          116 ENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKV  195 (386)
T ss_dssp             SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEEECSSCSCCCCEEEETTTTEEEEEETTTTEEEECBTTSCSCEE
T ss_pred             CccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEEeCCCCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCceEE
Confidence            346789999766555544 45678888887766544333333334456788864 4555665667788888887544333


Q ss_pred             EecC-CCCeeEEEeecC-CeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEccCCCEE-EEee
Q 021399           89 TFNF-DSPARSVDFAVG-DKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTI-ISAG  165 (313)
Q Consensus        89 ~~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i-~t~~  165 (313)
                      .... ......+.+.+. +.+.+.....      ...+..+..   +... ............+.++++|.+..| ++=.
T Consensus       196 l~~~~l~~P~giavdp~~g~ly~td~~~------~~~I~r~~~---dG~~-~~~~~~~~~~~PnGlavd~~~~~lY~aD~  265 (386)
T 3v65_B          196 LLWQSLEKPRAIALHPMEGTIYWTDWGN------TPRIEASSM---DGSG-RRIIADTHLFWPNGLTIDYAGRRMYWVDA  265 (386)
T ss_dssp             EECSSCSCEEEEEEETTTTEEEEEECSS------SCEEEEEET---TSCS-CEEEECSSCSCEEEEEEEGGGTEEEEEET
T ss_pred             eecCCCCCCcEEEEEcCCCeEEEeccCC------CCEEEEEeC---CCCC-cEEEEECCCCCeeeEEEeCCCCEEEEEEC
Confidence            3322 234566667653 4443332211      011111111   1111 111222223345788999765544 4445


Q ss_pred             CCCeEEEEECCCCceeeecccccCceeceEEEEECCCCCEEEEeeCCCcEEEEECCCCcEEEEEe
Q 021399          166 EDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYV  230 (313)
Q Consensus       166 ~d~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~  230 (313)
                      ..+.|..+|+..... +.+..  ........+++. .+..+++-...+.|..+|..+++.+..+.
T Consensus       266 ~~~~I~~~d~dG~~~-~~~~~--~~~~~P~giav~-~~~ly~td~~~~~V~~~~~~~G~~~~~i~  326 (386)
T 3v65_B          266 KHHVIERANLDGSHR-KAVIS--QGLPHPFAITVF-EDSLYWTDWHTKSINSANKFTGKNQEIIR  326 (386)
T ss_dssp             TTTEEEEECTTSCSC-EEEEC--SSCSSEEEEEEE-TTEEEEEETTTTEEEEEETTTCCSCEEEE
T ss_pred             CCCEEEEEeCCCCee-EEEEE--CCCCCceEEEEE-CCEEEEeeCCCCeEEEEECCCCcceEEEc
Confidence            667899999764322 22211  112345666663 44556666667888888876776655554

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=96.85  E-value=0.21  Score=43.57  Aligned_cols=202  Identities=9%  Similarity=0.070  Sum_probs=100.6

Q ss_pred             ccceeEEEEccCCCEEEEeeCC---CC-eEEEeCCCCcE-EEEecCCCCceEEEEECC-CCCeEEEeeCCCcEEEEECCC
Q 021399           10 ERPLTYLKYNKDGDLLFSCAKD---HT-PTVWFADNGER-LGTYRGHNGAVWCCDVSR-DSMTLITGSADQTAKLWNVET   83 (313)
Q Consensus        10 ~~~v~~~~fs~~g~~l~s~s~d---~~-i~iw~~~~~~~-~~~~~~H~~~V~~~~~~~-~~~~l~s~s~D~~v~vWd~~~   83 (313)
                      ...+..++|+++|+++++-..+   .. +...+...+.. ...+. .-..-..++++| ++.++++-..++.|+.+|..+
T Consensus       181 ~~~P~giavd~dG~lyVad~~~~~~~~gv~~~~~~~~~~~~~~~~-~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~  259 (433)
T 4hw6_A          181 IGQCADVNFTLNGDMVVVDDQSSDTNTGIYLFTRASGFTERLSLC-NARGAKTCAVHPQNGKIYYTRYHHAMISSYDPAT  259 (433)
T ss_dssp             CSCEEEEEECTTCCEEEEECCSCTTSEEEEEECGGGTTCCEEEEE-ECSSBCCCEECTTTCCEEECBTTCSEEEEECTTT
T ss_pred             CCCccEEEECCCCCEEEEcCCCCcccceEEEEECCCCeecccccc-ccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCC
Confidence            4457899999999955554322   11 22222211111 01111 112234578888 677666666778899999987


Q ss_pred             CeE-EEEecC--CCCeeEEEeecCCe-EEEEECCCceeccccceeeeeeeCCCCCC--CceEEEec-C------------
Q 021399           84 GAQ-LFTFNF--DSPARSVDFAVGDK-LAVITTDPFMELNSAIHVKRIARDPADQG--GESVLILK-G------------  144 (313)
Q Consensus        84 ~~~-~~~~~~--~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~-~------------  144 (313)
                      +.. ......  ......+.+.+++. +.+.....       ..++.+..+.....  ......-. +            
T Consensus       260 g~~~~~~~~~~~~~~~~~ia~dpdG~~LYvad~~~-------~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a  332 (433)
T 4hw6_A          260 GTLTEEEVMMDTKGSNFHIVWHPTGDWAYIIYNGK-------HCIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGA  332 (433)
T ss_dssp             CCEEEEEEECSCCSSCEEEEECTTSSEEEEEETTT-------TEEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGS
T ss_pred             CeEEEEEeccCCCCCcccEEEeCCCCEEEEEeCCC-------CEEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccce
Confidence            765 222222  12223577777665 44433221       01111111100000  00000000 0            


Q ss_pred             CCCceEEEEE---------ccCCCEEEEeeCCCeEEEEECCCCceeeecccc-----cC----------ceeceEEEEEC
Q 021399          145 PQGRINRAVW---------GPLNRTIISAGEDAIVRIWDTETGKLLKESDKE-----TG----------HKKTITSLAKA  200 (313)
Q Consensus       145 ~~~~i~~~~~---------~~~~~~i~t~~~d~~i~lwd~~~~~~~~~~~~~-----~~----------h~~~v~~~~~s  200 (313)
                      ....-..+++         .+.++.+++-...+.|+.++. ++. +.++...     .+          .-.....++++
T Consensus       333 ~~~~P~giav~~n~~y~~dd~~g~lyvaD~~n~~I~~~~~-~G~-v~t~~G~g~~~~~G~~dG~~~~~~~~~~P~giavd  410 (433)
T 4hw6_A          333 RLWGPNQGIFVKNEAYAGEEDEYDFYFCDRDSHTVRVLTP-EGR-VTTYAGRGNSREWGYVDGELRSQALFNHPTSIAYD  410 (433)
T ss_dssp             BCSSEEEEEEEECGGGTTSSCCEEEEEEETTTTEEEEECT-TSE-EEEEECCCTTCSSCCBCEETTTTCBCSSEEEEEEE
T ss_pred             EEcCCccEEEEccccccccCCCCcEEEEECCCCEEEEECC-CCC-EEEEEeCCCCCccccCCCccccccEeCCCcEEEEE
Confidence            0122345777         666666666667788999985 443 2222211     01          11236788888


Q ss_pred             -CCCCEEEEeeCCCcEEEEECC
Q 021399          201 -ADGSHFLTGSLDKSAKLWDAR  221 (313)
Q Consensus       201 -~~~~~l~s~s~dg~i~iwd~~  221 (313)
                       ++|..+++-...+.|+.++++
T Consensus       411 ~~~g~lyVaD~~n~rIr~i~~e  432 (433)
T 4hw6_A          411 MKRKCFYIGDCDNHRVRKIAPE  432 (433)
T ss_dssp             TTTTEEEEEEGGGTEEEEEEEC
T ss_pred             CCCCEEEEEeCCCCEEEEEecC
Confidence             667666666666777777654

>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}

Probab=96.85  E-value=0.16  Score=42.31  Aligned_cols=259  Identities=9%  Similarity=0.083  Sum_probs=125.1

Q ss_pred             cceeEEEEccCCCEEEEeeCCCCeEEEeCCCCcEEEEec----CCCCceEEEEECCCCCeEEEeeCCCcEEEEECCCCeE
Q 021399           11 RPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYR----GHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQ   86 (313)
Q Consensus        11 ~~v~~~~fs~~g~~l~s~s~d~~i~iw~~~~~~~~~~~~----~H~~~V~~~~~~~~~~~l~s~s~D~~v~vWd~~~~~~   86 (313)
                      ..+.++.|.+++..++ ++.++.| +...+.++.-....    .....+.++.+++ ++.++ ++.++.|.. ..+.++.
T Consensus        36 ~~~~~v~~~~~~~~~~-~G~~g~i-~~s~DgG~tW~~~~~~~~~~~~~~~~i~~~~-~~~~~-~g~~g~i~~-S~DgG~t  110 (327)
T 2xbg_A           36 ATILDMSFIDRHHGWL-VGVNATL-METRDGGQTWEPRTLVLDHSDYRFNSVSFQG-NEGWI-VGEPPIMLH-TTDGGQS  110 (327)
T ss_dssp             SCEEEEEESSSSCEEE-EETTTEE-EEESSTTSSCEECCCCCSCCCCEEEEEEEET-TEEEE-EEETTEEEE-ESSTTSS
T ss_pred             CcEEEEEECCCCcEEE-EcCCCeE-EEeCCCCCCCeECCCCCCCCCccEEEEEecC-CeEEE-EECCCeEEE-ECCCCCC
Confidence            4678899987777777 4556654 23333343222211    2244688899876 44444 456665433 3333321


Q ss_pred             EEEec----CCCCeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEccCCCEEE
Q 021399           87 LFTFN----FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTII  162 (313)
Q Consensus        87 ~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~  162 (313)
                      =....    .......+.+.+++.+.+......+....            +.+..-..........+..+.+.+.+..++
T Consensus       111 W~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~g~v~~S~------------DgG~tW~~~~~~~~~~~~~~~~~~~~~~~~  178 (327)
T 2xbg_A          111 WSQIPLDPKLPGSPRLIKALGNGSAEMITNVGAIYRTK------------DSGKNWQALVQEAIGVMRNLNRSPSGEYVA  178 (327)
T ss_dssp             CEECCCCTTCSSCEEEEEEEETTEEEEEETTCCEEEES------------STTSSEEEEECSCCCCEEEEEECTTSCEEE
T ss_pred             ceECccccCCCCCeEEEEEECCCCEEEEeCCccEEEEc------------CCCCCCEEeecCCCcceEEEEEcCCCcEEE
Confidence            11111    11223444444455554443322110000            001111111223345677888888888777


Q ss_pred             EeeCCCeEEEEECCCCceeeecccccCceeceEEEEECCCCCEEEEeeCCCcEEEEECCCCcEEEEEec-----CCceeE
Q 021399          163 SAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVT-----ERPVNA  237 (313)
Q Consensus       163 t~~~d~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~-----~~~~~~  237 (313)
                      .+......+-+|-. +.....+.  ......+..+++.+++..+ .++.+|.+++++.+.++....+..     ...+..
T Consensus       179 ~g~~G~~~~S~d~g-G~tW~~~~--~~~~~~~~~~~~~~~g~~~-~~~~~G~~~~s~~D~G~tW~~~~~~~~~~~~~~~~  254 (327)
T 2xbg_A          179 VSSRGSFYSTWEPG-QTAWEPHN--RTTSRRLHNMGFTPDGRLW-MIVNGGKIAFSDPDNSENWGELLSPLRRNSVGFLD  254 (327)
T ss_dssp             EETTSSEEEEECTT-CSSCEEEE--CCSSSCEEEEEECTTSCEE-EEETTTEEEEEETTEEEEECCCBCTTSSCCSCEEE
T ss_pred             EECCCcEEEEeCCC-CCceeECC--CCCCCccceeEECCCCCEE-EEeCCceEEEecCCCCCeeEeccCCcccCCcceEE
Confidence            66554444445531 22222221  1234578888899988754 555678877775332333332221     124677


Q ss_pred             EEeccCCCEEEEcccccCceeEeeccCCCceeeeeeehhhhhhhccccccccceeEEEECCCCCee
Q 021399          238 VTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKRY  303 (313)
Q Consensus       238 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~fspdgk~~  303 (313)
                      +++.|.+..++ ++. ++..+...|.-      .-|....     ....+...++++.|.++++.+
T Consensus       255 v~~~~~~~~~~-~g~-~g~i~~S~DgG------~tW~~~~-----~~~~~~~~~~~v~~~~~~~~~  307 (327)
T 2xbg_A          255 LAYRTPNEVWL-AGG-AGALLCSQDGG------QTWQQDV-----DVKKVPSNFYKILFFSPDQGF  307 (327)
T ss_dssp             EEESSSSCEEE-EES-TTCEEEESSTT------SSCEECG-----GGTTSSSCCCEEEEEETTEEE
T ss_pred             EEecCCCEEEE-EeC-CCeEEEeCCCC------cccEEcC-----ccCCCCCCeEEEEEECCCceE
Confidence            88887655433 332 33333433421      1232111     001123567788887666543

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=96.78  E-value=0.04  Score=51.29  Aligned_cols=208  Identities=12%  Similarity=-0.051  Sum_probs=106.7

Q ss_pred             cceeEEEEccCCCEEEEe-eCCCCeEEEeCCC----CcEEEEecCCCCceEEEEECCC-CCeEEEeeCCCcEEEEECCCC
Q 021399           11 RPLTYLKYNKDGDLLFSC-AKDHTPTVWFADN----GERLGTYRGHNGAVWCCDVSRD-SMTLITGSADQTAKLWNVETG   84 (313)
Q Consensus        11 ~~v~~~~fs~~g~~l~s~-s~d~~i~iw~~~~----~~~~~~~~~H~~~V~~~~~~~~-~~~l~s~s~D~~v~vWd~~~~   84 (313)
                      ..+..++|++.+..|+-+ ...+.|+.+++..    ......+...-.....+++.+. ++++++-...+.|.+.++...
T Consensus       406 ~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~glavD~~~g~LY~tD~~~~~I~v~d~dg~  485 (699)
T 1n7d_A          406 RNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGV  485 (699)
T ss_dssp             TTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEECCCSSSBCEECCTTTSCEEEEBSSSC
T ss_pred             cceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceEEEEeeCCcEEEEeccCCeEEEEecCCC
Confidence            345678999877666655 3567888888765    2222122211123456787754 456666566788999998765


Q ss_pred             eEEEEecC-CCCeeEEEeecC-CeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEccCCC-EE
Q 021399           85 AQLFTFNF-DSPARSVDFAVG-DKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNR-TI  161 (313)
Q Consensus        85 ~~~~~~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~i  161 (313)
                      .....+.. ......+.+.+. +.+.+.....      ...+..+.   .+..... ..........+.++++|.+. .+
T Consensus       486 ~~~~l~~~~~~~P~giavDp~~g~ly~td~~~------~~~I~~~~---~dG~~~~-~l~~~~l~~PnGlavd~~~~~LY  555 (699)
T 1n7d_A          486 KRKTLFREQGSKPRAIVVDPVHGFMYWTDWGT------PAKIKKGG---LNGVDIY-SLVTENIQWPNGITLDLLSGRLY  555 (699)
T ss_dssp             CEEEECCCSSCCCCCEECCSSSSCCEECCCSS------SCCEEBCC---SSSCCCC-EESCSSCSSCCCEEECTTTCCEE
T ss_pred             ceEEEEeCCCCCcceEEEccCCCcEEEcccCC------CCeEEEEe---CCCCCee-EEEeCCCCCccEEEEeccCCEEE
Confidence            54433322 123344555543 2222221110      00011100   0000111 11111123345788998654 44


Q ss_pred             EEeeCCCeEEEEECCCCceeeecccccCceeceEEEEECCCCCEEEEeeCCCcEEEEECCCCcEEEEEe
Q 021399          162 ISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYV  230 (313)
Q Consensus       162 ~t~~~d~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~  230 (313)
                      ++-...+.|..+|+.... .+.+......-.....+++..+ ..+++....+.|..+|..+++.+..+.
T Consensus       556 ~aD~~~~~I~~~d~dG~~-~~~~~~~~~~~~~P~glavd~~-~lywtd~~~~~V~~~d~~~G~~~~~i~  622 (699)
T 1n7d_A          556 WVDSKLHSISSIDVNGGN-RKTILEDEKRLAHPFSLAVFED-KVFWTDIINEAIFSANRLTGSDVNLLA  622 (699)
T ss_dssp             EEETTTTEEEEECSSSSC-CEEECCCSSSCSSCCCCEEETT-EEEEECSTTTCEEEEETTTEEEEECCC
T ss_pred             EEecCCCeEEEEccCCCc-eEEEEecCCcCCCceEeEEECC-EEEEEeCCCCeEEEEEccCCCceEEee
Confidence            555567789999986422 2222211111123344555444 455566667889999988888777664

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=96.77  E-value=0.2  Score=42.22  Aligned_cols=205  Identities=9%  Similarity=-0.062  Sum_probs=111.3

Q ss_pred             ceeEEEEccCCCEEEEe-eCCCCeEEEeCCCCcEEEEecCCCCceEEEEECCC-CCeEEEeeCCCcEEEEECCCCeEEEE
Q 021399           12 PLTYLKYNKDGDLLFSC-AKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRD-SMTLITGSADQTAKLWNVETGAQLFT   89 (313)
Q Consensus        12 ~v~~~~fs~~g~~l~s~-s~d~~i~iw~~~~~~~~~~~~~H~~~V~~~~~~~~-~~~l~s~s~D~~v~vWd~~~~~~~~~   89 (313)
                      .+..++|++....|+-+ ...+.|..++.+.+.....+...-.....+++.+. ++++++-...+.|.+.+++.......
T Consensus        74 ~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l  153 (349)
T 3v64_C           74 NAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVL  153 (349)
T ss_dssp             CEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEE
T ss_pred             ceEEEEEeccccEEEEEeccCCceEEEecCCCCceEEEeCCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCceEEE
Confidence            35788999766555544 45677888887766543333332334567888864 45556666678899999876543333


Q ss_pred             ecC-CCCeeEEEeec-CCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEccCCCEE-EEeeC
Q 021399           90 FNF-DSPARSVDFAV-GDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTI-ISAGE  166 (313)
Q Consensus        90 ~~~-~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i-~t~~~  166 (313)
                      ... ......+.+.| ++.+.+.....      ...+..+..   +.. .............+.++++|.+..| ++-..
T Consensus       154 ~~~~l~~P~~iavdp~~g~ly~td~~~------~~~I~r~~~---dG~-~~~~~~~~~~~~PnGla~d~~~~~lY~aD~~  223 (349)
T 3v64_C          154 LWQSLEKPRAIALHPMEGTIYWTDWGN------TPRIEASSM---DGS-GRRIIADTHLFWPNGLTIDYAGRRMYWVDAK  223 (349)
T ss_dssp             ECTTCSCEEEEEEETTTTEEEEEECSS------SCEEEEEET---TSC-SCEESCCSSCSCEEEEEEETTTTEEEEEETT
T ss_pred             EeCCCCCcceEEEecCcCeEEEeccCC------CCEEEEEeC---CCC-CcEEEEECCCCCcceEEEeCCCCEEEEEECC
Confidence            322 23456677776 34444433211      011111110   000 1111111223345788999765554 44456


Q ss_pred             CCeEEEEECCCCceeeecccccCceeceEEEEECCCCCEEEEeeCCCcEEEEECCCCcEEEEEe
Q 021399          167 DAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYV  230 (313)
Q Consensus       167 d~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~  230 (313)
                      .+.|..+|+.... .+.+..  ........+++. ++..+++-...+.|..+|..+++....+.
T Consensus       224 ~~~I~~~~~dG~~-~~~~~~--~~~~~P~giav~-~~~ly~td~~~~~V~~~~~~~G~~~~~i~  283 (349)
T 3v64_C          224 HHVIERANLDGSH-RKAVIS--QGLPHPFAITVF-EDSLYWTDWHTKSINSANKFTGKNQEIIR  283 (349)
T ss_dssp             TTEEEEEETTSCS-CEEEEC--SSCSSEEEEEEE-TTEEEEEETTTTEEEEEETTTCCSCEEEE
T ss_pred             CCEEEEEeCCCCc-eEEEEe--CCCCCceEEEEE-CCEEEEecCCCCeEEEEEccCCCccEEec
Confidence            6789999976432 222211  112345666663 44555565567788888866666555543

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=96.73  E-value=0.2  Score=41.58  Aligned_cols=207  Identities=12%  Similarity=-0.020  Sum_probs=112.3

Q ss_pred             cceeEEEEccCCCEEEEe-eCCCCeEEEeCCC----CcEEEEecCCCCceEEEEECCC-CCeEEEeeCCCcEEEEECCCC
Q 021399           11 RPLTYLKYNKDGDLLFSC-AKDHTPTVWFADN----GERLGTYRGHNGAVWCCDVSRD-SMTLITGSADQTAKLWNVETG   84 (313)
Q Consensus        11 ~~v~~~~fs~~g~~l~s~-s~d~~i~iw~~~~----~~~~~~~~~H~~~V~~~~~~~~-~~~l~s~s~D~~v~vWd~~~~   84 (313)
                      ..+..+.|++++..|+-+ ..++.|..++.+.    ......+...-.....+++.+. ++++++-...+.|.+.++...
T Consensus        30 ~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavd~~~~~ly~~d~~~~~I~~~~~~g~  109 (316)
T 1ijq_A           30 RNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGV  109 (316)
T ss_dssp             SSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSS
T ss_pred             CceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCcCEEEEeecCCeEEEEECCCCEEEEEeCCCC
Confidence            446789999876555544 4568888888765    2222223322234577888864 455566567789999998765


Q ss_pred             eEEEEec-CCCCeeEEEeec-CCeEEEEECCCceeccccceeeeeeeCCCCCCCceEE-EecCCCCceEEEEEccCCCEE
Q 021399           85 AQLFTFN-FDSPARSVDFAV-GDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVL-ILKGPQGRINRAVWGPLNRTI  161 (313)
Q Consensus        85 ~~~~~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~~~~~~~~~~~i  161 (313)
                      ....... .......+.+.| ++.+.+.....      ...+....   .+  +.... .....-...+.++++|.+..|
T Consensus       110 ~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~------~~~I~~~~---~d--G~~~~~~~~~~~~~P~gla~d~~~~~l  178 (316)
T 1ijq_A          110 KRKTLFRENGSKPRAIVVDPVHGFMYWTDWGT------PAKIKKGG---LN--GVDIYSLVTENIQWPNGITLDLLSGRL  178 (316)
T ss_dssp             SEEEEEECTTCCEEEEEEETTTTEEEEEECSS------SCEEEEEE---TT--SCCEEEEECSSCSCEEEEEEETTTTEE
T ss_pred             ceEEEEECCCCCcceEEeCCCCCEEEEEccCC------CCeEEEEc---CC--CCCeEEEEECCCCCceEEEEeccCCEE
Confidence            4433332 223456677776 44444433211      01111111   01  11111 112223456788999876655


Q ss_pred             EE-eeCCCeEEEEECCCCceeeecccccCceeceEEEEECCCCCEEEEeeCCCcEEEEECCCCcEEEEEe
Q 021399          162 IS-AGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYV  230 (313)
Q Consensus       162 ~t-~~~d~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~  230 (313)
                      .. -...+.|..+|+... ..+.+......-.....+++. .+..+++-...+.|..+|..+++.+..+.
T Consensus       179 Y~~D~~~~~I~~~d~dg~-~~~~~~~~~~~~~~P~giav~-~~~ly~~d~~~~~V~~~~~~~g~~~~~i~  246 (316)
T 1ijq_A          179 YWVDSKLHSISSIDVNGG-NRKTILEDEKRLAHPFSLAVF-EDKVFWTDIINEAIFSANRLTGSDVNLLA  246 (316)
T ss_dssp             EEEETTTTEEEEEETTSC-SCEEEEECTTTTSSEEEEEEE-TTEEEEEETTTTEEEEEETTTCCCCEEEE
T ss_pred             EEEECCCCeEEEEecCCC-ceEEEeecCCccCCcEEEEEE-CCEEEEEECCCCeEEEEeCCCCcceEEEe
Confidence            44 446679999998632 222221111112234566664 35566666667889999987777655553

>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}

Probab=96.72  E-value=0.09  Score=44.47  Aligned_cols=101  Identities=11%  Similarity=0.063  Sum_probs=58.7

Q ss_pred             ceEEEEEccCCCEEEEeeCCCeEEEEECCCCce--eeecccccCceeceEEEEECCC---CCEEE-EeeCC-----CcEE
Q 021399          148 RINRAVWGPLNRTIISAGEDAIVRIWDTETGKL--LKESDKETGHKKTITSLAKAAD---GSHFL-TGSLD-----KSAK  216 (313)
Q Consensus       148 ~i~~~~~~~~~~~i~t~~~d~~i~lwd~~~~~~--~~~~~~~~~h~~~v~~~~~s~~---~~~l~-s~s~d-----g~i~  216 (313)
                      .-..++|.|+++.++ +..++.|++++  +++.  +..+............++++|+   +..|. +-...     +.|.
T Consensus        32 ~P~~ia~~pdG~l~V-~e~~g~I~~i~--~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~v~  108 (352)
T 2ism_A           32 VPWALAFLPDGGMLI-AERPGRIRLFR--EGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQVV  108 (352)
T ss_dssp             CEEEEEECTTSCEEE-EETTTEEEEEE--TTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEEEEE
T ss_pred             CceEEEEcCCCeEEE-EeCCCeEEEEE--CCCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCccEEE
Confidence            456788999998554 56679999998  3331  2221111112356789999998   44444 44332     5677


Q ss_pred             EEECCCCc-----EE-EEEec----CCceeEEEeccCCCEEEEccc
Q 021399          217 LWDARTLE-----LI-KTYVT----ERPVNAVTMSPLLDHVVLGGG  252 (313)
Q Consensus       217 iwd~~~~~-----~~-~~~~~----~~~~~~~~~~p~~~~~~~~~~  252 (313)
                      .++.....     .+ ..+..    .+....++|.|++. ++++.+
T Consensus       109 r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~-Lyv~~G  153 (352)
T 2ism_A          109 RLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGM-LYVTTG  153 (352)
T ss_dssp             EEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSC-EEEECC
T ss_pred             EEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCC-EEEEEC
Confidence            78776432     11 11221    12346899999884 555543

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=96.68  E-value=0.22  Score=41.47  Aligned_cols=95  Identities=16%  Similarity=0.202  Sum_probs=62.1

Q ss_pred             CCeEEEEECC---CCceeeecccc--c-C-------ceeceEEEEECCCCCEEEEeeCC-CcEEEEECCCCcEEEEEe-c
Q 021399          167 DAIVRIWDTE---TGKLLKESDKE--T-G-------HKKTITSLAKAADGSHFLTGSLD-KSAKLWDARTLELIKTYV-T  231 (313)
Q Consensus       167 d~~i~lwd~~---~~~~~~~~~~~--~-~-------h~~~v~~~~~s~~~~~l~s~s~d-g~i~iwd~~~~~~~~~~~-~  231 (313)
                      +..|..+|+.   +++.+......  . +       .......++..++|+..++++.- +.|...+.+.. .+..+. .
T Consensus        99 ~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~rV~pdG~-~~~~~~~~  177 (334)
T 2p9w_A           99 ASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIARVSADGK-TVSTFAWE  177 (334)
T ss_dssp             CCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEEEECTTSC-CEEEEEEC
T ss_pred             CCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCeEEEEeCCCC-EEeeeeec
Confidence            6778899988   66654332211  0 0       11357899999999999999988 88877777644 333322 1


Q ss_pred             C------CceeEEEeccCCCEEEEcccccCceeEeeccC
Q 021399          232 E------RPVNAVTMSPLLDHVVLGGGQDASAVTTTDHR  264 (313)
Q Consensus       232 ~------~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~  264 (313)
                      .      .-.+.++++|++..+++..+  .+.++.+|.+
T Consensus       178 ~~~~~~~~G~nGIv~~pdg~~Liv~~~--~g~L~~fD~~  214 (334)
T 2p9w_A          178 SGNGGQRPGYSGITFDPHSNKLIAFGG--PRALTAFDVS  214 (334)
T ss_dssp             CCCSSSCCSCSEEEEETTTTEEEEESS--SSSEEEEECS
T ss_pred             CCCcccccCcceEEEeCCCCEEEEEcC--CCeEEEEcCC
Confidence            1      12568999999998888765  4445555543

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=96.64  E-value=0.13  Score=44.87  Aligned_cols=158  Identities=9%  Similarity=-0.034  Sum_probs=88.3

Q ss_pred             eEEEEECC-CCCeEEEeeCCCcEEEEECCCCeEEEEecCCCCeeEEEeecCCe-EEEEECCCceeccccceeeeeeeCCC
Q 021399           55 VWCCDVSR-DSMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDK-LAVITTDPFMELNSAIHVKRIARDPA  132 (313)
Q Consensus        55 V~~~~~~~-~~~~l~s~s~D~~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~  132 (313)
                      -..++++| ++..|+.+...+.|+.+|+.++..............+.+.+++. +.+..... ....  .....+..+ .
T Consensus       139 P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~~~~~~~~~P~~ia~d~~G~~lyvad~~~-~~~~--~~v~~~~~~-g  214 (430)
T 3tc9_A          139 AVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVSTVYSGLSKVRTICWTHEADSMIITNDQN-NNDR--PNNYILTRE-S  214 (430)
T ss_dssp             CCEEEEETTEEEEEEEEEBTEEEEEEETTTTEEEEEECCCSCEEEEEECTTSSEEEEEECCS-CTTS--EEEEEEEGG-G
T ss_pred             CCEEEECCCCCCeEEEEeCCCcEEEEECCCCEEEEEecCCCCcceEEEeCCCCEEEEEeCCC-Cccc--ceEEEEeCC-C
Confidence            35788987 34445555555889999998876555444445567788887766 44433211 0000  000000000 0


Q ss_pred             CCCCceEEEecCCCCceEEEEEcc-CCCEEEEeeCCCeEEEEECCCCceeeecccccCceeceEEEEECCCCCE-EEEee
Q 021399          133 DQGGESVLILKGPQGRINRAVWGP-LNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSH-FLTGS  210 (313)
Q Consensus       133 ~~~~~~~~~~~~~~~~i~~~~~~~-~~~~i~t~~~d~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~-l~s~s  210 (313)
                      .......  +. .......++++| .+..+++-..++.|..++...+.... +... +.......++++|+|++ +++-.
T Consensus       215 ~~~~~~~--l~-~~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~-~~~~-~~~~~P~gia~~pdG~~lyv~d~  289 (430)
T 3tc9_A          215 GFKVITE--LT-KGQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTP-LFTI-QDSGWEFHIQFHPSGNYAYIVVV  289 (430)
T ss_dssp             TSCSEEE--EE-ECSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEE-EEEC-SSSSCCEEEEECTTSSEEEEEET
T ss_pred             ceeeeee--ec-cCCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEE-EEEc-CCCCcceeEEEcCCCCEEEEEEC
Confidence            0000011  11 112345677898 67766666678899999987654311 1111 11245678999999995 45555


Q ss_pred             CCCcEEEEECC
Q 021399          211 LDKSAKLWDAR  221 (313)
Q Consensus       211 ~dg~i~iwd~~  221 (313)
                      ..+.|..++.+
T Consensus       290 ~~~~I~~~~~d  300 (430)
T 3tc9_A          290 NQHYILRSDYD  300 (430)
T ss_dssp             TTTEEEEEEEE
T ss_pred             CCCEEEEEeCC
Confidence            67788888765

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=96.47  E-value=0.25  Score=39.59  Aligned_cols=118  Identities=12%  Similarity=0.126  Sum_probs=79.3

Q ss_pred             ecCCCCceEEEEEccCCCE-EEEeeCCCeEEEEECCCCceeeecccccCceeceEEEEECCCCCEEEEeeCCCcEEEEEC
Q 021399          142 LKGPQGRINRAVWGPLNRT-IISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDA  220 (313)
Q Consensus       142 ~~~~~~~i~~~~~~~~~~~-i~t~~~d~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~dg~i~iwd~  220 (313)
                      +.+-...+..++++|++.. +++...++.|...|.. ++.++++.. .+ ....-.+++.+++.++++.-.++.+.++++
T Consensus        22 l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l-~g-~~D~EGIa~~~~g~~~vs~E~~~~l~~~~v   98 (255)
T 3qqz_A           22 IAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPL-DF-VKDLETIEYIGDNQFVISDERDYAIYVISL   98 (255)
T ss_dssp             CTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEEC-SS-CSSEEEEEECSTTEEEEEETTTTEEEEEEE
T ss_pred             CCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEec-CC-CCChHHeEEeCCCEEEEEECCCCcEEEEEc
Confidence            3444567888999987664 4557788899999987 777666532 12 256778888888887676556788888887


Q ss_pred             CCCcE---EEEEec-------CCceeEEEeccCCCEEEEcccccCceeEeec
Q 021399          221 RTLEL---IKTYVT-------ERPVNAVTMSPLLDHVVLGGGQDASAVTTTD  262 (313)
Q Consensus       221 ~~~~~---~~~~~~-------~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~  262 (313)
                      .....   +.....       ......++++|.++.++++...+...++.++
T Consensus        99 ~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~  150 (255)
T 3qqz_A           99 TPNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVN  150 (255)
T ss_dssp             CTTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEE
T ss_pred             CCCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEc
Confidence            65432   222221       1224789999999988887544443555555

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=96.45  E-value=0.16  Score=45.03  Aligned_cols=104  Identities=14%  Similarity=0.156  Sum_probs=60.5

Q ss_pred             ceEEEEEccC--CCEEEEeeCCCeEEEEECCCCceeeecccccCceeceEEEEE-------CCCCCEEEEeeCCC-----
Q 021399          148 RINRAVWGPL--NRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAK-------AADGSHFLTGSLDK-----  213 (313)
Q Consensus       148 ~i~~~~~~~~--~~~i~t~~~d~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~-------s~~~~~l~s~s~dg-----  213 (313)
                      ....+++.|.  ++.+++-...+.|++.|++.+............-.....++|       +++|.+|+.+...+     
T Consensus       140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~  219 (496)
T 3kya_A          140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDE  219 (496)
T ss_dssp             SEEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTTGGG
T ss_pred             CCCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCCCccc
Confidence            3467888883  444555454578999999876543322211112335889999       99999666665543     


Q ss_pred             --cEEEEECCC-CcEE-----EEEecCCceeEEEeccCCCEEEEcc
Q 021399          214 --SAKLWDART-LELI-----KTYVTERPVNAVTMSPLLDHVVLGG  251 (313)
Q Consensus       214 --~i~iwd~~~-~~~~-----~~~~~~~~~~~~~~~p~~~~~~~~~  251 (313)
                        .|.+.+.+. +...     ..+..-...+.++.+|....++++.
T Consensus       220 ~~~V~~i~r~~~G~~~~~~~~~~v~~~~~p~giavdp~~g~LYvtd  265 (496)
T 3kya_A          220 SPSVYIIKRNADGTFDDRSDIQLIAAYKQCNGATIHPINGELYFNS  265 (496)
T ss_dssp             EEEEEEEECCTTSCCSTTSCEEEEEEESCCCCEEECTTTCCEEEEE
T ss_pred             CceEEEEecCCCCceeecccceeeccCCCceEEEEcCCCCeEEEEE
Confidence              256666443 1211     1222222356778888777766654

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=96.44  E-value=0.62  Score=43.83  Aligned_cols=264  Identities=11%  Similarity=0.007  Sum_probs=141.3

Q ss_pred             cceeEEEEccCCCEEEEeeCCCCeEEEeCCCCcEEEEec--------------CCCCceEEEEECCCCCeEEEeeCCCcE
Q 021399           11 RPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYR--------------GHNGAVWCCDVSRDSMTLITGSADQTA   76 (313)
Q Consensus        11 ~~v~~~~fs~~g~~l~s~s~d~~i~iw~~~~~~~~~~~~--------------~H~~~V~~~~~~~~~~~l~s~s~D~~v   76 (313)
                      ..|.++..+++|.+.+ |...+-|.+++..+++......              -....|.++...++|. +-.|..++-|
T Consensus       258 ~~i~~i~~d~~g~lWi-gt~~~Gl~~~~~~~~~~~~~~~~~f~~~~~~~~~~~l~~~~v~~i~~D~~g~-lWigt~~~Gl  335 (781)
T 3v9f_A          258 SYIFSIKQLKDNKLWI-ATELNGIMILDLQQNQFLLPEQIRFEFIREGDNNYSLSNASARYIFQDSFNN-IWIGTWGGGI  335 (781)
T ss_dssp             CCEEEEEECTTSEEEE-EESSSCEEEEETTCC---------CEEECBCSSTTSBSSSCEEEEEECSSCC-EEEEEBSSCE
T ss_pred             ceEEEEEECCCCCEEE-EeCCCCeEEECCCCCeeeeeeccccccccCCCCCCCCCCCeEEEEEEeCCCC-EEEEecCCeE
Confidence            4688898888887666 4443456778877665321111              1345789999888876 4556667778


Q ss_pred             EEEECCCCeEEEEec----------CCCCeeEEEeecCCeEEEEEC-CCceeccccceeeeeeeCCCCCCCceEEEecCC
Q 021399           77 KLWNVETGAQLFTFN----------FDSPARSVDFAVGDKLAVITT-DPFMELNSAIHVKRIARDPADQGGESVLILKGP  145 (313)
Q Consensus        77 ~vWd~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  145 (313)
                      ..++..+........          ....+.++....++.+.+++. ......+.....  ..... .       .....
T Consensus       336 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lWigt~~~Gl~~~~~~~~~--~~~~~-~-------~~~~~  405 (781)
T 3v9f_A          336 NFISNAPPTFHTWSYSPTQMNESSLSNKVVSSVCDDGQGKLWIGTDGGGINVFENGKRV--AIYNK-E-------NRELL  405 (781)
T ss_dssp             EEECSSCCSCEEEC----CCCSSCCSSSCEEEEEECTTSCEEEEEBSSCEEEEETTEEE--EECC-------------CC
T ss_pred             EEeCCCCCcceeeccCccccccCCCCCcceEEEEEcCCCCEEEEeCCCcEEEEECCCCe--EEEcc-C-------CCCCC
Confidence            888887654322110          112344444444455555542 222222111100  00000 0       00123


Q ss_pred             CCceEEEEEccCCCEEEEeeCCCeEEEEECCCCceeeecccccCceeceEEEEECCCCCEEEEeeCCCcEEEEECCCCcE
Q 021399          146 QGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLEL  225 (313)
Q Consensus       146 ~~~i~~~~~~~~~~~i~t~~~d~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~  225 (313)
                      ...|.++...+++. +..|+.++-|..+|..+++. ............|.++...++|...+ |+. +-+..+|.++++.
T Consensus       406 ~~~v~~i~~d~~g~-lWigt~~~Gl~~~~~~~~~~-~~~~~~~~~~~~v~~i~~d~~g~lwi-gt~-~Gl~~~~~~~~~~  481 (781)
T 3v9f_A          406 SNSVLCSLKDSEGN-LWFGTYLGNISYYNTRLKKF-QIIELEKNELLDVRVFYEDKNKKIWI-GTH-AGVFVIDLASKKV  481 (781)
T ss_dssp             CSBEEEEEECTTSC-EEEEETTEEEEEECSSSCEE-EECCSTTTCCCCEEEEEECTTSEEEE-EET-TEEEEEESSSSSC
T ss_pred             CcceEEEEECCCCC-EEEEeccCCEEEEcCCCCcE-EEeccCCCCCCeEEEEEECCCCCEEE-EEC-CceEEEeCCCCeE
Confidence            45677777777776 45577767789999876643 22221112346789999988887544 444 5688899887654


Q ss_pred             EEEEec------CCceeEEEeccCCCEEEEcccccCceeEeeccCCCceeeeeeehhhhhhhccccccccceeEEEECCC
Q 021399          226 IKTYVT------ERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPD  299 (313)
Q Consensus       226 ~~~~~~------~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~fspd  299 (313)
                      ..-...      ...+.++...+.+.. .++....+  ++.++...+.+.  .+...     ..+  ....|.++...++
T Consensus       482 ~~~~~~~~~~~~~~~i~~i~~d~~g~l-Wigt~~~G--l~~~~~~~~~~~--~~~~~-----~~l--~~~~i~~i~~d~~  549 (781)
T 3v9f_A          482 IHHYDTSNSQLLENFVRSIAQDSEGRF-WIGTFGGG--VGIYTPDMQLVR--KFNQY-----EGF--CSNTINQIYRSSK  549 (781)
T ss_dssp             CEEECTTTSSCSCSCEEEEEECTTCCE-EEEESSSC--EEEECTTCCEEE--EECTT-----TTC--SCSCEEEEEECTT
T ss_pred             EecccCcccccccceeEEEEEcCCCCE-EEEEcCCC--EEEEeCCCCeEE--EccCC-----CCC--CCCeeEEEEECCC
Confidence            322111      235777877776654 33322122  444555444332  12211     111  2457788888888


Q ss_pred             CCe
Q 021399          300 GKR  302 (313)
Q Consensus       300 gk~  302 (313)
                      |+.
T Consensus       550 g~l  552 (781)
T 3v9f_A          550 GQM  552 (781)
T ss_dssp             SCE
T ss_pred             CCE
Confidence            775

>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*

Probab=96.41  E-value=0.24  Score=41.81  Aligned_cols=103  Identities=11%  Similarity=-0.016  Sum_probs=58.8

Q ss_pred             CceEEEEEccCCCEEEEeeCCCeEEEEECCCCc-eeeecccccCceeceEEEEECCC----CCEEEEeeC---C----Cc
Q 021399          147 GRINRAVWGPLNRTIISAGEDAIVRIWDTETGK-LLKESDKETGHKKTITSLAKAAD----GSHFLTGSL---D----KS  214 (313)
Q Consensus       147 ~~i~~~~~~~~~~~i~t~~~d~~i~lwd~~~~~-~~~~~~~~~~h~~~v~~~~~s~~----~~~l~s~s~---d----g~  214 (313)
                      .....++|.|+++ ++.+..++.|+++|. +++ .+..+............++++|+    +...++-+.   +    +.
T Consensus        29 ~~P~~ia~~pdG~-l~V~e~~g~I~~~d~-~G~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~~  106 (354)
T 3a9g_A           29 EVPWSIAPLGGGR-YLVTERPGRLVLISP-SGKKLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHIRNR  106 (354)
T ss_dssp             SCEEEEEEEETTE-EEEEETTTEEEEECS-SCEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCEEEE
T ss_pred             CCCeEEEEcCCCe-EEEEeCCCEEEEEeC-CCceEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCcceE
Confidence            3456788999987 445566799999974 443 22222111112345789999997    444444432   3    56


Q ss_pred             EEEEECCCC--c-----EE-EEEec--CCceeEEEeccCCCEEEEccc
Q 021399          215 AKLWDARTL--E-----LI-KTYVT--ERPVNAVTMSPLLDHVVLGGG  252 (313)
Q Consensus       215 i~iwd~~~~--~-----~~-~~~~~--~~~~~~~~~~p~~~~~~~~~~  252 (313)
                      |..|+....  .     .+ ..+..  .+..+.++|.|++. ++++.+
T Consensus       107 v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~-Lyvt~G  153 (354)
T 3a9g_A          107 VIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGM-LYITTG  153 (354)
T ss_dssp             EEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSC-EEEECC
T ss_pred             EEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCc-EEEEEC
Confidence            777776543  1     11 11221  12356799999886 555543

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=96.41  E-value=0.4  Score=41.25  Aligned_cols=209  Identities=11%  Similarity=-0.040  Sum_probs=114.9

Q ss_pred             ccceeEEEEccCCCEEEEee-CCCCeEEEeCCCC----cEEEEecCCCCceEEEEECC-CCCeEEEeeCCCcEEEEECCC
Q 021399           10 ERPLTYLKYNKDGDLLFSCA-KDHTPTVWFADNG----ERLGTYRGHNGAVWCCDVSR-DSMTLITGSADQTAKLWNVET   83 (313)
Q Consensus        10 ~~~v~~~~fs~~g~~l~s~s-~d~~i~iw~~~~~----~~~~~~~~H~~~V~~~~~~~-~~~~l~s~s~D~~v~vWd~~~   83 (313)
                      ...+..++|++.+..|+-+. ..+.|+.++.+..    .....+...-.....+++.+ .++++++-...+.|.+.+++.
T Consensus       111 ~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavD~~~~~lY~~d~~~~~I~~~~~~g  190 (400)
T 3p5b_L          111 LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKG  190 (400)
T ss_dssp             CSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEECTTT
T ss_pred             cCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCcccEEEEecCCceEEEECCCCeEEEEeCCC
Confidence            44677899998666655554 5677887877642    22223333345667888887 455666666778899999876


Q ss_pred             CeEEEEec-CCCCeeEEEeec-CCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEccCCCEE
Q 021399           84 GAQLFTFN-FDSPARSVDFAV-GDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTI  161 (313)
Q Consensus        84 ~~~~~~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i  161 (313)
                      ........ ....+..+.+.+ ++.+.+......      ..+....   .+.. .........-...+.+++++.+..|
T Consensus       191 ~~~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~------~~I~~~~---~dG~-~~~~~~~~~l~~P~glavd~~~~~l  260 (400)
T 3p5b_L          191 VKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTP------AKIKKGG---LNGV-DIYSLVTENIQWPNGITLDLLSGRL  260 (400)
T ss_dssp             CSEEEEEECSSCCEEEEEEETTTTEEEEEECSSS------CCEEEEE---TTSC-SCEEEECSSCSCEEEEEEETTTTEE
T ss_pred             CceEEEEeCCCCCcceEEEecccCeEEEEeCCCC------CEEEEEe---CCCC-ccEEEEECCCCceEEEEEEeCCCEE
Confidence            65443333 223456677776 344444332110      0111111   0111 1111222223456788999776655


Q ss_pred             EEe-eCCCeEEEEECCCCceeeecccccCceeceEEEEECCCCCEEEEeeCCCcEEEEECCCCcEEEEEe
Q 021399          162 ISA-GEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYV  230 (313)
Q Consensus       162 ~t~-~~d~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~  230 (313)
                      ..+ ...+.|..+|+.... .+.+......-.....++.. .+..+.+-...+.|..+|..+++.+..+.
T Consensus       261 Y~aD~~~~~I~~~d~dG~~-~~~~~~~~~~l~~P~gl~v~-~~~lywtd~~~~~V~~~~~~~G~~~~~i~  328 (400)
T 3p5b_L          261 YWVDSKLHSISSIDVNGGN-RKTILEDEKRLAHPFSLAVF-EDKVFWTDIINEAIFSANRLTGSDVNLLA  328 (400)
T ss_dssp             EEEETTTTEEEEEETTSCC-CEEEEECSSTTSSEEEEEEE-TTEEEEEESSSCSEEEEESSSCCCCEEEE
T ss_pred             EEEECCCCEEEEEeCCCCc-cEEEEeCCCCCCCCEEEEEe-CCEEEEecCCCCeEEEEEcCCCCceEEEe
Confidence            554 456789999985432 22222111122334566663 33455566667889999987877666654

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=96.19  E-value=0.56  Score=40.80  Aligned_cols=201  Identities=11%  Similarity=0.052  Sum_probs=100.2

Q ss_pred             cceeEEEEccC--CCEEEEeeCCCCeEEEeCCCCcEEEEecCCCCceEEEEECCCCCeEEEeeCC---Cc-EEEEECCCC
Q 021399           11 RPLTYLKYNKD--GDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSAD---QT-AKLWNVETG   84 (313)
Q Consensus        11 ~~v~~~~fs~~--g~~l~s~s~d~~i~iw~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D---~~-v~vWd~~~~   84 (313)
                      .....++|+|+  +..|+.+...+.|+.+|.++++... +.........++++++++++++-...   .. +...+...+
T Consensus       139 ~~P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~v~~-~~~~~~~P~giavd~dG~lyVad~~~~~~~~gv~~~~~~~~  217 (433)
T 4hw6_A          139 DNIWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQYVDI-KTTNIGQCADVNFTLNGDMVVVDDQSSDTNTGIYLFTRASG  217 (433)
T ss_dssp             SCCCEEEECTTTTTCEEEEECBTSCEEEEETTTTEEEE-ECCCCSCEEEEEECTTCCEEEEECCSCTTSEEEEEECGGGT
T ss_pred             CCCceEEEccccCCCEEEEEeCCCCEEEEECCCCEEEE-eecCCCCccEEEECCCCCEEEEcCCCCcccceEEEEECCCC
Confidence            45678999995  4445555444889999988776543 33344567899999999955554321   11 222222111


Q ss_pred             eE-EEEecCCCCeeEEEeec-CCeEEEEECCCceeccccceeeeeeeCCCCCCCce--EEEecCCCCceEEEEEccCCC-
Q 021399           85 AQ-LFTFNFDSPARSVDFAV-GDKLAVITTDPFMELNSAIHVKRIARDPADQGGES--VLILKGPQGRINRAVWGPLNR-  159 (313)
Q Consensus        85 ~~-~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~i~~~~~~~~~~-  159 (313)
                      .. ............+.+.+ ++.+.+....       ...++.+.  +.  .+..  .....+....-..++++|+++ 
T Consensus       218 ~~~~~~~~~~~~P~giavd~~~G~lyv~d~~-------~~~V~~~d--~~--~g~~~~~~~~~~~~~~~~~ia~dpdG~~  286 (433)
T 4hw6_A          218 FTERLSLCNARGAKTCAVHPQNGKIYYTRYH-------HAMISSYD--PA--TGTLTEEEVMMDTKGSNFHIVWHPTGDW  286 (433)
T ss_dssp             TCCEEEEEECSSBCCCEECTTTCCEEECBTT-------CSEEEEEC--TT--TCCEEEEEEECSCCSSCEEEEECTTSSE
T ss_pred             eeccccccccCCCCEEEEeCCCCeEEEEECC-------CCEEEEEE--CC--CCeEEEEEeccCCCCCcccEEEeCCCCE
Confidence            00 00111111222333444 3333222111       01111111  00  1111  111111222234689999998 


Q ss_pred             EEEEeeCCCeEEEEECC--CCcee--eeccc---ccCc---------eeceEEEEE---------CCCCCEEEEeeCCCc
Q 021399          160 TIISAGEDAIVRIWDTE--TGKLL--KESDK---ETGH---------KKTITSLAK---------AADGSHFLTGSLDKS  214 (313)
Q Consensus       160 ~i~t~~~d~~i~lwd~~--~~~~~--~~~~~---~~~h---------~~~v~~~~~---------s~~~~~l~s~s~dg~  214 (313)
                      .+++-...+.|+.++..  ++...  ..+..   ..+.         -.....+++         .++|...++-...+.
T Consensus       287 LYvad~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~n~~  366 (433)
T 4hw6_A          287 AYIIYNGKHCIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRDSHT  366 (433)
T ss_dssp             EEEEETTTTEEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEEETTTTE
T ss_pred             EEEEeCCCCEEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCcEEEEECCCCE
Confidence            44555567889998864  22210  11110   0011         123567888         778877777777788


Q ss_pred             EEEEECCCCc
Q 021399          215 AKLWDARTLE  224 (313)
Q Consensus       215 i~iwd~~~~~  224 (313)
                      |+.++. ++.
T Consensus       367 I~~~~~-~G~  375 (433)
T 4hw6_A          367 VRVLTP-EGR  375 (433)
T ss_dssp             EEEECT-TSE
T ss_pred             EEEECC-CCC
Confidence            999885 443

>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}

Probab=96.18  E-value=0.45  Score=39.57  Aligned_cols=217  Identities=7%  Similarity=0.002  Sum_probs=107.7

Q ss_pred             ccceeEEEEccCCCEEEEeeCCCCeEEEeCCC-CcEEEEec---CCCCceEEEEECCCCCeEEEeeCCCcE-EEEECCCC
Q 021399           10 ERPLTYLKYNKDGDLLFSCAKDHTPTVWFADN-GERLGTYR---GHNGAVWCCDVSRDSMTLITGSADQTA-KLWNVETG   84 (313)
Q Consensus        10 ~~~v~~~~fs~~g~~l~s~s~d~~i~iw~~~~-~~~~~~~~---~H~~~V~~~~~~~~~~~l~s~s~D~~v-~vWd~~~~   84 (313)
                      ...+..+.|++ +..++ ++.++.|  +...+ ++.-....   .+.+.+..+.+.++++.++.+ .++.| +-+|  .+
T Consensus        79 ~~~~~~i~~~~-~~~~~-~g~~g~i--~~S~DgG~tW~~~~~~~~~~~~~~~i~~~~~~~~~~~~-~~g~v~~S~D--gG  151 (327)
T 2xbg_A           79 DYRFNSVSFQG-NEGWI-VGEPPIM--LHTTDGGQSWSQIPLDPKLPGSPRLIKALGNGSAEMIT-NVGAIYRTKD--SG  151 (327)
T ss_dssp             CCEEEEEEEET-TEEEE-EEETTEE--EEESSTTSSCEECCCCTTCSSCEEEEEEEETTEEEEEE-TTCCEEEESS--TT
T ss_pred             CccEEEEEecC-CeEEE-EECCCeE--EEECCCCCCceECccccCCCCCeEEEEEECCCCEEEEe-CCccEEEEcC--CC
Confidence            34678899986 44444 4555543  33333 44322222   234567788877667666554 45554 2222  22


Q ss_pred             eEEE--EecCCCCeeEEEeecCCeEEEEECCCceecccc--ceeeeeeeCCCCCCCceEEEecCCCCceEEEEEccCCCE
Q 021399           85 AQLF--TFNFDSPARSVDFAVGDKLAVITTDPFMELNSA--IHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRT  160 (313)
Q Consensus        85 ~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~  160 (313)
                      +.=.  ..........+.+.+++.++++...........  ...+.           .+  -......+..+.+.+++..
T Consensus       152 ~tW~~~~~~~~~~~~~~~~~~~~~~~~~g~~G~~~~S~d~gG~tW~-----------~~--~~~~~~~~~~~~~~~~g~~  218 (327)
T 2xbg_A          152 KNWQALVQEAIGVMRNLNRSPSGEYVAVSSRGSFYSTWEPGQTAWE-----------PH--NRTTSRRLHNMGFTPDGRL  218 (327)
T ss_dssp             SSEEEEECSCCCCEEEEEECTTSCEEEEETTSSEEEEECTTCSSCE-----------EE--ECCSSSCEEEEEECTTSCE
T ss_pred             CCCEEeecCCCcceEEEEEcCCCcEEEEECCCcEEEEeCCCCCcee-----------EC--CCCCCCccceeEECCCCCE
Confidence            2111  111223455666666665555443321111000  11111           01  1122345677778887765


Q ss_pred             EEEeeCCCeEEEEECCCCceeeecccc-cCceeceEEEEECCCCCEEEEeeCCCcEEEEECCCCcEEEEEec----CCce
Q 021399          161 IISAGEDAIVRIWDTETGKLLKESDKE-TGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVT----ERPV  235 (313)
Q Consensus       161 i~t~~~d~~i~lwd~~~~~~~~~~~~~-~~h~~~v~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~----~~~~  235 (313)
                      + .++.+|.+++.+...++....+... ......+.++++.+++..++.+. +|.+ ++..+.++.-..+..    +..+
T Consensus       219 ~-~~~~~G~~~~s~~D~G~tW~~~~~~~~~~~~~~~~v~~~~~~~~~~~g~-~g~i-~~S~DgG~tW~~~~~~~~~~~~~  295 (327)
T 2xbg_A          219 W-MIVNGGKIAFSDPDNSENWGELLSPLRRNSVGFLDLAYRTPNEVWLAGG-AGAL-LCSQDGGQTWQQDVDVKKVPSNF  295 (327)
T ss_dssp             E-EEETTTEEEEEETTEEEEECCCBCTTSSCCSCEEEEEESSSSCEEEEES-TTCE-EEESSTTSSCEECGGGTTSSSCC
T ss_pred             E-EEeCCceEEEecCCCCCeeEeccCCcccCCcceEEEEecCCCEEEEEeC-CCeE-EEeCCCCcccEEcCccCCCCCCe
Confidence            4 4566788877753334444333211 11234588999988877666554 6766 344444544333321    2456


Q ss_pred             eEEEeccCCCEEEEc
Q 021399          236 NAVTMSPLLDHVVLG  250 (313)
Q Consensus       236 ~~~~~~p~~~~~~~~  250 (313)
                      ..+.|.+.. .++++
T Consensus       296 ~~v~~~~~~-~~~~~  309 (327)
T 2xbg_A          296 YKILFFSPD-QGFIL  309 (327)
T ss_dssp             CEEEEEETT-EEEEE
T ss_pred             EEEEEECCC-ceEEE
Confidence            778876433 34443

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=96.12  E-value=0.51  Score=39.68  Aligned_cols=220  Identities=10%  Similarity=-0.025  Sum_probs=112.8

Q ss_pred             ceeEEEEccCCCEEEEeeCCCCeEEEeCCCCcEEEEecCCCCceEEEEECCCCC-eEEEeeCCCcEEEEECCCCeEEEEe
Q 021399           12 PLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSM-TLITGSADQTAKLWNVETGAQLFTF   90 (313)
Q Consensus        12 ~v~~~~fs~~g~~l~s~s~d~~i~iw~~~~~~~~~~~~~H~~~V~~~~~~~~~~-~l~s~s~D~~v~vWd~~~~~~~~~~   90 (313)
                      ...|....+++.+++ + ....|+..+++.......+.+. .....++|++.++ ++++-...+.|..+++.........
T Consensus        35 ~~~C~~~~~~~~ll~-~-~~~~I~~i~~~g~~~~~~~~~~-~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~  111 (349)
T 3v64_C           35 RRSCKALGPEPVLLF-A-NRIDIRQVLPHRSEYTLLLNNL-ENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVV  111 (349)
T ss_dssp             SSCEEESSSCCEEEE-E-CBSCEEEECTTSCCEEEEECSC-SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEE
T ss_pred             CCcccccccCceeEe-e-cccceEEEeCCCCeeEEeecCC-CceEEEEEeccccEEEEEeccCCceEEEecCCCCceEEE
Confidence            345666556443333 3 3456777777665544344433 3478899997555 4555456788999998876543333


Q ss_pred             cC-CCCeeEEEeec-CCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEccCCCEE-EEeeCC
Q 021399           91 NF-DSPARSVDFAV-GDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTI-ISAGED  167 (313)
Q Consensus        91 ~~-~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i-~t~~~d  167 (313)
                      .. ......+.+.+ ++.+.+.....       ..+.....   + +................+++.|.+..+ ++-...
T Consensus       112 ~~~~~~p~glavd~~~g~ly~~d~~~-------~~I~~~~~---d-G~~~~~l~~~~l~~P~~iavdp~~g~ly~td~~~  180 (349)
T 3v64_C          112 STGLESPGGLAVDWVHDKLYWTDSGT-------SRIEVANL---D-GAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGN  180 (349)
T ss_dssp             CSSCSCCCEEEEETTTTEEEEEETTT-------TEEEEEET---T-SCSCEEEECTTCSCEEEEEEETTTTEEEEEECSS
T ss_pred             eCCCCCccEEEEecCCCeEEEEcCCC-------CeEEEEcC---C-CCceEEEEeCCCCCcceEEEecCcCeEEEeccCC
Confidence            22 12234455554 34443332211       01111100   0 011112222233455788888865544 444444


Q ss_pred             -CeEEEEECCCCceeeecccccCceeceEEEEECCCCCEEEEe-eCCCcEEEEECCCCcEEEEEec-CCceeEEEeccCC
Q 021399          168 -AIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTG-SLDKSAKLWDARTLELIKTYVT-ERPVNAVTMSPLL  244 (313)
Q Consensus       168 -~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~-s~dg~i~iwd~~~~~~~~~~~~-~~~~~~~~~~p~~  244 (313)
                       +.|...++.... ...+..  ..-.....+++++++..|.-+ ...+.|..+|++.......+.. ......+++  +.
T Consensus       181 ~~~I~r~~~dG~~-~~~~~~--~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG~~~~~~~~~~~~~P~giav--~~  255 (349)
T 3v64_C          181 TPRIEASSMDGSG-RRIIAD--THLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQGLPHPFAITV--FE  255 (349)
T ss_dssp             SCEEEEEETTSCS-CEESCC--SSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEE--ET
T ss_pred             CCEEEEEeCCCCC-cEEEEE--CCCCCcceEEEeCCCCEEEEEECCCCEEEEEeCCCCceEEEEeCCCCCceEEEE--EC
Confidence             789888876432 222211  123357889999866665554 4567799999875332221211 123455555  23


Q ss_pred             CEEEEc
Q 021399          245 DHVVLG  250 (313)
Q Consensus       245 ~~~~~~  250 (313)
                      +.++.+
T Consensus       256 ~~ly~t  261 (349)
T 3v64_C          256 DSLYWT  261 (349)
T ss_dssp             TEEEEE
T ss_pred             CEEEEe
Confidence            455554

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=96.00  E-value=0.64  Score=39.72  Aligned_cols=194  Identities=8%  Similarity=-0.024  Sum_probs=102.2

Q ss_pred             eeEEEEccCCCEEEEeeCCCCeEEEeCCCCcEEEEecCCCCceEEEEECCCCC-eEEEeeCCCcEEEEECCCCeEEEEec
Q 021399           13 LTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSM-TLITGSADQTAKLWNVETGAQLFTFN   91 (313)
Q Consensus        13 v~~~~fs~~g~~l~s~s~d~~i~iw~~~~~~~~~~~~~H~~~V~~~~~~~~~~-~l~s~s~D~~v~vWd~~~~~~~~~~~   91 (313)
                      -.|....++ .+|+.+ ....|+..+++.........+ -.....++|++.++ ++++-...+.|..+++..........
T Consensus        79 ~~C~~~~~~-~~l~~~-~~~~I~~i~~~~~~~~~~~~~-~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~  155 (386)
T 3v65_B           79 RSCKALGPE-PVLLFA-NRIDIRQVLPHRSEYTLLLNN-LENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVS  155 (386)
T ss_dssp             SCEEECSSC-CEEEEE-CBSCEEEECTTSCCCEEEECS-CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEEEC
T ss_pred             CeECCcccc-ceeEee-cCccceeeccCCCcEEEEecC-CCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEEe
Confidence            345554553 344433 346778888776554433443 34577899997554 55555567889999988765443332


Q ss_pred             CC-CCeeEEEeec-CCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEccCCCEEE-EeeCC-
Q 021399           92 FD-SPARSVDFAV-GDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTII-SAGED-  167 (313)
Q Consensus        92 ~~-~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~-t~~~d-  167 (313)
                      .. .....+.+.+ ++.+.+.....       ..+...   ..+ +................+++.|.+..+. +-... 
T Consensus       156 ~~~~~p~glavd~~~g~lY~~d~~~-------~~I~~~---~~d-g~~~~~l~~~~l~~P~giavdp~~g~ly~td~~~~  224 (386)
T 3v65_B          156 TGLESPGGLAVDWVHDKLYWTDSGT-------SRIEVA---NLD-GAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNT  224 (386)
T ss_dssp             SSCSCCCCEEEETTTTEEEEEETTT-------TEEEEC---BTT-SCSCEEEECSSCSCEEEEEEETTTTEEEEEECSSS
T ss_pred             CCCCCccEEEEEeCCCeEEEEcCCC-------CeEEEE---eCC-CCceEEeecCCCCCCcEEEEEcCCCeEEEeccCCC
Confidence            21 2233445553 34443332211       001100   001 1111122222334567888888665544 43344 


Q ss_pred             CeEEEEECCCCceeeecccccCceeceEEEEECCCCCEEEEe-eCCCcEEEEECCCC
Q 021399          168 AIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTG-SLDKSAKLWDARTL  223 (313)
Q Consensus       168 ~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~-s~dg~i~iwd~~~~  223 (313)
                      +.|...++..... ..+..  ..-.....+++++++..|..+ +..+.|..+|++..
T Consensus       225 ~~I~r~~~dG~~~-~~~~~--~~~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~dG~  278 (386)
T 3v65_B          225 PRIEASSMDGSGR-RIIAD--THLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGS  278 (386)
T ss_dssp             CEEEEEETTSCSC-EEEEC--SSCSCEEEEEEEGGGTEEEEEETTTTEEEEECTTSC
T ss_pred             CEEEEEeCCCCCc-EEEEE--CCCCCeeeEEEeCCCCEEEEEECCCCEEEEEeCCCC
Confidence            7888888764322 22111  112356889999766655544 45677888988653

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=95.96  E-value=0.8  Score=40.51  Aligned_cols=62  Identities=10%  Similarity=0.058  Sum_probs=40.1

Q ss_pred             ceeEEEEccC-CCEEEEe-eCCCCeEEEeCCCCcEEEEecCC---CCceEEEEE-------CCCCCeEEEeeCC
Q 021399           12 PLTYLKYNKD-GDLLFSC-AKDHTPTVWFADNGERLGTYRGH---NGAVWCCDV-------SRDSMTLITGSAD   73 (313)
Q Consensus        12 ~v~~~~fs~~-g~~l~s~-s~d~~i~iw~~~~~~~~~~~~~H---~~~V~~~~~-------~~~~~~l~s~s~D   73 (313)
                      ....++|+|. ...|+.+ ...+.|++.|.+++.+...+..-   -.....++|       +++++.++.+...
T Consensus       140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~  213 (496)
T 3kya_A          140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDY  213 (496)
T ss_dssp             SEEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECC
T ss_pred             CCCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCC
Confidence            4678999983 4444444 44467888888877665444332   234788999       9999855555443

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=95.82  E-value=1.3  Score=41.81  Aligned_cols=208  Identities=12%  Similarity=-0.044  Sum_probs=109.7

Q ss_pred             ccceeEEEEccCCCEEE-EeeCCCCeEEEeCCCC----cEEEEecCCCCceEEEEECCCC-CeEEEeeCCCcEEEEECCC
Q 021399           10 ERPLTYLKYNKDGDLLF-SCAKDHTPTVWFADNG----ERLGTYRGHNGAVWCCDVSRDS-MTLITGSADQTAKLWNVET   83 (313)
Q Consensus        10 ~~~v~~~~fs~~g~~l~-s~s~d~~i~iw~~~~~----~~~~~~~~H~~~V~~~~~~~~~-~~l~s~s~D~~v~vWd~~~   83 (313)
                      ...+..++|++....|+ +-...+.|+.++++..    .....+...-.....|++.+.+ +++++-...+.|.+.++..
T Consensus       423 ~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~GLAvD~~~~~LY~tD~~~~~I~v~~ldG  502 (791)
T 3m0c_C          423 LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKG  502 (791)
T ss_dssp             CSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred             CCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCcceeeeeecCCcEEEEecCCCeEEEEeCCC
Confidence            34567889988655554 4445577877777642    2223333334456678888766 4556656778999999886


Q ss_pred             CeEEEEec-CCCCeeEEEeecC-CeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEccCCCEE
Q 021399           84 GAQLFTFN-FDSPARSVDFAVG-DKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTI  161 (313)
Q Consensus        84 ~~~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i  161 (313)
                      ........ .......+.+.+. +.+.+......      ..+....   .+ +......+.......+.+++.+.+..|
T Consensus       503 ~~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~------~~I~~~~---~d-G~~~~~lv~~~l~~P~GLavD~~~~~L  572 (791)
T 3m0c_C          503 VKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTP------AKIKKGG---LN-GVDIYSLVTENIQWPNGITLDLLSGRL  572 (791)
T ss_dssp             SSEEEEEECTTCCEEEEEEETTTTEEEEEECSSS------CEEEEEE---TT-SCCEEEEECSSCSCEEEEEEETTTTEE
T ss_pred             CeEEEEEeCCCCCcceEEEecCCCCEEEecCCCC------CeEEEEe---cC-CCceEEEEeCCCCCceEEEEecCCCeE
Confidence            65443332 2234566777664 44444332110      0111111   11 111122222233456778888766555


Q ss_pred             EEe-eCCCeEEEEECCCCceeeecccccCceeceEEEEECCCCCEEEEeeCCCcEEEEECCCCcEEEEE
Q 021399          162 ISA-GEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTY  229 (313)
Q Consensus       162 ~t~-~~d~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~  229 (313)
                      ..+ .....|...++.... ...+....+.-....+|++.. +..+++-...+.|...|..+++.+..+
T Consensus       573 YwaD~~~~~I~~~d~dG~~-~~~v~~~~~~l~~P~glav~~-~~lYwtD~~~~~I~~~dk~tG~~~~~l  639 (791)
T 3m0c_C          573 YWVDSKLHSISSIDVNGGN-RKTILEDEKRLAHPFSLAVFE-DKVFWTDIINEAIFSANRLTGSDVNLL  639 (791)
T ss_dssp             EEEETTTTEEEEEETTSCS-CEEEEECTTTTSSEEEEEEET-TEEEEEETTTTEEEEEETTTCCCCEEE
T ss_pred             EEEeCCCCcEEEEecCCCc-eEEEecCCCccCCCCEEEEeC-CEEEEEECCCCEEEEEeCCCCcceEEe
Confidence            444 456789999885432 222211111122345666643 244445555677888887777655544

>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}

Probab=95.72  E-value=0.78  Score=38.56  Aligned_cols=107  Identities=13%  Similarity=0.060  Sum_probs=60.9

Q ss_pred             CCCceEEEEEccCCCEEEEeeCCCeEEEEECCCCce--eeecc-cccCceeceEEEEECCC----CCEEEEee--CCCcE
Q 021399          145 PQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKL--LKESD-KETGHKKTITSLAKAAD----GSHFLTGS--LDKSA  215 (313)
Q Consensus       145 ~~~~i~~~~~~~~~~~i~t~~~d~~i~lwd~~~~~~--~~~~~-~~~~h~~~v~~~~~s~~----~~~l~s~s--~dg~i  215 (313)
                      .-..-..++|.|+++.+++--..|.|++++...++.  +..+. ...........++++|+    +...++-+  .++.|
T Consensus        30 gL~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~~~~v  109 (347)
T 3das_A           30 GLNSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSASDNRI  109 (347)
T ss_dssp             CCSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECSSSEEE
T ss_pred             CCCCceEEEEcCCCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEecCCCCEE
Confidence            344567888999998666654489999998765443  21111 11123456889999995    44444322  34455


Q ss_pred             EEEECCCC----------cEE-EEEec--CCceeEEEeccCCCEEEEccc
Q 021399          216 KLWDARTL----------ELI-KTYVT--ERPVNAVTMSPLLDHVVLGGG  252 (313)
Q Consensus       216 ~iwd~~~~----------~~~-~~~~~--~~~~~~~~~~p~~~~~~~~~~  252 (313)
                      .-|.+...          +.+ ..+..  .+....++|.|++. ++++.|
T Consensus       110 ~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~-Lyvt~G  158 (347)
T 3das_A          110 VRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKM-LYAGTG  158 (347)
T ss_dssp             EEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSC-EEEECB
T ss_pred             EEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCC-EEEEEC
Confidence            55554431          111 12221  23456799999885 555544

>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}

Probab=95.36  E-value=0.5  Score=39.84  Aligned_cols=104  Identities=11%  Similarity=0.018  Sum_probs=56.7

Q ss_pred             ceEEEEEccCCCEEEEeeCCCeEEEEECCCCceeeeccc----ccCceeceEEEEECCC----CCEEEEeeC-------C
Q 021399          148 RINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDK----ETGHKKTITSLAKAAD----GSHFLTGSL-------D  212 (313)
Q Consensus       148 ~i~~~~~~~~~~~i~t~~~d~~i~lwd~~~~~~~~~~~~----~~~h~~~v~~~~~s~~----~~~l~s~s~-------d  212 (313)
                      .-..++|.|+++.++.+...+.|++++.. +.....+..    ..........++++|+    +...++-+.       .
T Consensus        19 ~P~~i~~~pdG~~l~V~e~~G~i~~~~~~-g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~g~~~   97 (353)
T 2g8s_A           19 HPWALAFLPDNHGMLITLRGGELRHWQAG-KGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDGKAG   97 (353)
T ss_dssp             SEEEEEECSTTCCEEEEETTTEEEEEETT-TEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSSSCEE
T ss_pred             CcEEEEEcCCCCEEEEEeCCceEEEEeCC-CceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCCCCce
Confidence            34678899999834445667999999853 322111110    0112345689999995    544444333       2


Q ss_pred             CcEEEEECCCC--c--EEEEEec--------CCceeEEEeccCCCEEEEcccc
Q 021399          213 KSAKLWDARTL--E--LIKTYVT--------ERPVNAVTMSPLLDHVVLGGGQ  253 (313)
Q Consensus       213 g~i~iwd~~~~--~--~~~~~~~--------~~~~~~~~~~p~~~~~~~~~~~  253 (313)
                      ..|.-|++...  .  ....+..        .+....++|.|++ .++++.++
T Consensus        98 ~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG-~Lyv~~Gd  149 (353)
T 2g8s_A           98 TAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKG-YLFIALGE  149 (353)
T ss_dssp             EEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSSS-EEEEEECC
T ss_pred             eEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECCCC-cEEEEECC
Confidence            24555665432  1  1122211        1224679999988 56665443

>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}

Probab=95.30  E-value=1.1  Score=37.66  Aligned_cols=100  Identities=9%  Similarity=0.041  Sum_probs=59.6

Q ss_pred             ccceeEEEEccCCCEEEEeeCCCCeEEEeCCCCcE--EEEec---CCCCceEEEEECCC---C-CeEEEeeCC-----Cc
Q 021399           10 ERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGER--LGTYR---GHNGAVWCCDVSRD---S-MTLITGSAD-----QT   75 (313)
Q Consensus        10 ~~~v~~~~fs~~g~~l~s~s~d~~i~iw~~~~~~~--~~~~~---~H~~~V~~~~~~~~---~-~~l~s~s~D-----~~   75 (313)
                      -.....++|.|+|.++++ ..++.|++++  +++.  +..+.   .-......++++|+   + .+.++-...     +.
T Consensus        30 l~~P~~ia~~pdG~l~V~-e~~g~I~~i~--~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~  106 (352)
T 2ism_A           30 LEVPWALAFLPDGGMLIA-ERPGRIRLFR--EGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQ  106 (352)
T ss_dssp             CSCEEEEEECTTSCEEEE-ETTTEEEEEE--TTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEEE
T ss_pred             CCCceEEEEcCCCeEEEE-eCCCeEEEEE--CCCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCccE
Confidence            445689999999986664 5668888887  4432  22221   22346788999998   4 444444432     56


Q ss_pred             EEEEECCCCe-----EEEE-ecC----CCCeeEEEeecCCeEEEEEC
Q 021399           76 AKLWNVETGA-----QLFT-FNF----DSPARSVDFAVGDKLAVITT  112 (313)
Q Consensus        76 v~vWd~~~~~-----~~~~-~~~----~~~~~~~~~~~~~~~~~~~~  112 (313)
                      |..++...+.     .+.. +..    .+....+.|.+++.+.+...
T Consensus       107 v~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~G  153 (352)
T 2ism_A          107 VVRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTTG  153 (352)
T ss_dssp             EEEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEECC
T ss_pred             EEEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEEC
Confidence            7778876431     1111 221    12345777888776665543

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}

Probab=95.22  E-value=1  Score=36.65  Aligned_cols=66  Identities=17%  Similarity=0.213  Sum_probs=37.0

Q ss_pred             CCCEEEEeeCC-----CeEEEEECCCCceeeecccccCceeceEEEEECCCCCEEEEeeCC-----CcEEEEECCCCcE
Q 021399          157 LNRTIISAGED-----AIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLD-----KSAKLWDARTLEL  225 (313)
Q Consensus       157 ~~~~i~t~~~d-----~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d-----g~i~iwd~~~~~~  225 (313)
                      +++.++.||.+     ..+.++|+.+.+ ...+.........-.++.+  ++..++.|+.+     ..+.+||+++.+-
T Consensus       159 ~~~iyv~GG~~~~~~~~~~~~~d~~~~~-W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~~W  234 (301)
T 2vpj_A          159 SGVIYCLGGYDGLNILNSVEKYDPHTGH-WTNVTPMATKRSGAGVALL--NDHIYVVGGFDGTAHLSSVEAYNIRTDSW  234 (301)
T ss_dssp             TTEEEEECCBCSSCBCCCEEEEETTTTE-EEEECCCSSCCBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETTTTEE
T ss_pred             CCEEEEECCCCCCcccceEEEEeCCCCc-EEeCCCCCcccccceEEEE--CCEEEEEeCCCCCcccceEEEEeCCCCcE
Confidence            45667777654     458899987654 2222111111111222222  56777888764     4688999987643

>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*

Probab=94.38  E-value=2  Score=36.17  Aligned_cols=57  Identities=14%  Similarity=0.273  Sum_probs=36.9

Q ss_pred             eceEEEEECCCCCEEEEee-CCCcEEEEECCC-CcE--EEEEecCCceeEEEecc-CCCEEE
Q 021399          192 KTITSLAKAADGSHFLTGS-LDKSAKLWDART-LEL--IKTYVTERPVNAVTMSP-LLDHVV  248 (313)
Q Consensus       192 ~~v~~~~~s~~~~~l~s~s-~dg~i~iwd~~~-~~~--~~~~~~~~~~~~~~~~p-~~~~~~  248 (313)
                      ...+.++|+||++.++.+. ..+.|..|+++. ++.  .+.+........+++.+ +|...+
T Consensus       221 ~~pNGia~spDg~~lYvadt~~~~I~~~~~~~~g~l~~~~~~~~~g~PDGi~vD~e~G~lwv  282 (355)
T 3sre_A          221 DFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVLSFDTLVDNISVDPVTGDLWV  282 (355)
T ss_dssp             SSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEECSSEEEEEEECTTTCCEEE
T ss_pred             cccCcceECCCCCEEEEEeCCCCeEEEEEECCCCcEecCEEEeCCCCCceEEEeCCCCcEEE
Confidence            3468899999998776654 577899999863 332  22333344556777777 465433

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=94.35  E-value=1.9  Score=35.68  Aligned_cols=205  Identities=9%  Similarity=-0.012  Sum_probs=108.7

Q ss_pred             ceeEEEEccCCCEEE-EeeCCCCeEEEeCCCCcEE-EEecCCCCceEEEEECC-CCCeEEEeeCCCcEEEEECCCCeEEE
Q 021399           12 PLTYLKYNKDGDLLF-SCAKDHTPTVWFADNGERL-GTYRGHNGAVWCCDVSR-DSMTLITGSADQTAKLWNVETGAQLF   88 (313)
Q Consensus        12 ~v~~~~fs~~g~~l~-s~s~d~~i~iw~~~~~~~~-~~~~~H~~~V~~~~~~~-~~~~l~s~s~D~~v~vWd~~~~~~~~   88 (313)
                      .+..+.|++.+..|+ +-...+.|..++.+.+... ..+...-.....+++.+ .++++++-...+.|.+.+++......
T Consensus        36 ~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~  115 (318)
T 3sov_A           36 DAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKV  115 (318)
T ss_dssp             EEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEECCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEE
T ss_pred             ccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcCCCCCccEEEEEcCCCeEEEEECCCCEEEEEECCCCcEEE
Confidence            355788887554444 4445677887877655321 12222223455678876 45555665667889999987644333


Q ss_pred             Ee-cCCCCeeEEEeec-CCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEccCCCEEE-Eee
Q 021399           89 TF-NFDSPARSVDFAV-GDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTII-SAG  165 (313)
Q Consensus        89 ~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~-t~~  165 (313)
                      .. ........+.+.+ ++.+.+.....      ...+..+..   +... ........-..-+.++++|.+..|. +=.
T Consensus       116 l~~~~~~~P~giavdp~~g~ly~td~~~------~~~I~r~~~---dG~~-~~~~~~~~l~~Pnglavd~~~~~lY~aD~  185 (318)
T 3sov_A          116 LFWQELDQPRAIALDPSSGFMYWTDWGE------VPKIERAGM---DGSS-RFIIINSEIYWPNGLTLDYEEQKLYWADA  185 (318)
T ss_dssp             EECSSCSSEEEEEEEGGGTEEEEEECSS------SCEEEEEET---TSCS-CEEEECSSCSCEEEEEEETTTTEEEEEET
T ss_pred             EEeCCCCCccEEEEeCCCCEEEEEecCC------CCEEEEEEc---CCCC-eEEEEECCCCCccEEEEeccCCEEEEEEC
Confidence            22 2223455666665 34444432210      011111110   1111 1111122223457889998655554 445


Q ss_pred             CCCeEEEEECCCCceeeecccccCceeceEEEEECCCCCEEEEeeCCCcEEEEECCCCcEEEEEe
Q 021399          166 EDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYV  230 (313)
Q Consensus       166 ~d~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~  230 (313)
                      ..+.|..+|+.... .+.+..  +.......+++.. +..+.+-...+.|..+|..+++....+.
T Consensus       186 ~~~~I~~~d~dG~~-~~~~~~--~~~~~P~glav~~-~~lywtd~~~~~V~~~~~~~G~~~~~i~  246 (318)
T 3sov_A          186 KLNFIHKSNLDGTN-RQAVVK--GSLPHPFALTLFE-DILYWTDWSTHSILACNKYTGEGLREIH  246 (318)
T ss_dssp             TTTEEEEEETTSCS-CEEEEC--SCCSCEEEEEEET-TEEEEEETTTTEEEEEETTTCCSCEEEE
T ss_pred             CCCEEEEEcCCCCc-eEEEec--CCCCCceEEEEeC-CEEEEEecCCCeEEEEECCCCCceEEEe
Confidence            67889999986322 222211  1223455666653 3455565567889999988877655554

>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1

Probab=94.34  E-value=2.4  Score=36.82  Aligned_cols=216  Identities=10%  Similarity=0.040  Sum_probs=118.7

Q ss_pred             EEEEccCCCEEEEeeCCCCeEEEeCCCCcEEEEecCCCCceEEEEE-CCCCCeEEEeeCCCcEEEEECCCC-eEEEEecC
Q 021399           15 YLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDV-SRDSMTLITGSADQTAKLWNVETG-AQLFTFNF   92 (313)
Q Consensus        15 ~~~fs~~g~~l~s~s~d~~i~iw~~~~~~~~~~~~~H~~~V~~~~~-~~~~~~l~s~s~D~~v~vWd~~~~-~~~~~~~~   92 (313)
                      +.-.+|..+.|+--. ...+.|+|+++...++.+.-.+. |.-=.| +++.--++|   +..|.-|+++.. .++..+..
T Consensus        70 sAIMnP~~~iiALra-g~~lQiFnle~K~klks~~~~e~-VvfWkWis~~~l~lVT---~taVyHWsi~~~s~P~kvFdR  144 (494)
T 1bpo_A           70 SAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMTDD-VTFWKWISLNTVALVT---DNAVYHWSMEGESQPVKMFDR  144 (494)
T ss_dssp             EEEECSSSSCEEEEE-TTEEEEEETTTTEEEEEEECSSC-CCEEEEEETTEEEEEC---SSEEEEEESSSSCCCEEEEEC
T ss_pred             eeeeCCCCcEEEEec-CCeEEEEchHHhhhhcceecCCC-ceEEEecCCCeEEEEc---CCeeEEecccCCCCchhheec
Confidence            466788888887765 78999999999998888776554 433344 443223343   357999999642 34444432


Q ss_pred             -----CCCeeEEEeecCCeEEEEEC--CCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEccC---CCEEE
Q 021399           93 -----DSPARSVDFAVGDKLAVITT--DPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPL---NRTII  162 (313)
Q Consensus        93 -----~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~---~~~i~  162 (313)
                           ...+......++.+.+++..  ..-..+.+.+.++...       ......++||-+....+.....   ...++
T Consensus       145 ~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~e-------r~~sQ~ieGhaa~F~~~~~~g~~~~~~lf~  217 (494)
T 1bpo_A          145 HSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVD-------RKVSQPIEGHAASFAQFKMEGNAEESTLFC  217 (494)
T ss_dssp             CGGGTTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEEST-------TCCEEEECCSEEEEEEEECTTCSSEEEEEE
T ss_pred             chhcccceEEEEEECCCCCeEEEEeecccCCcccceEEEeecc-------ccccchheeeeeeeEEEecCCCCCCceEEE
Confidence                 22333444445555443321  0001222333333322       1233455666544433332211   12344


Q ss_pred             EeeC---CCeEEEEECCCC---c-ee----ee-cccccCceeceEEEEECCCCCEEEEeeCCCcEEEEECCCCcEEEEEe
Q 021399          163 SAGE---DAIVRIWDTETG---K-LL----KE-SDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYV  230 (313)
Q Consensus       163 t~~~---d~~i~lwd~~~~---~-~~----~~-~~~~~~h~~~v~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~  230 (313)
                      .+..   .++++|.++...   . ..    .. +.....-.+-.-++..++.-..+..-+.-|.|.++|++|+.++..-.
T Consensus       218 fa~r~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvamqvs~kygviyviTK~G~i~lyDleTgt~i~~nr  297 (494)
T 1bpo_A          218 FAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNR  297 (494)
T ss_dssp             EEECSTTCCEEEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTCCEEEEEE
T ss_pred             EEEecCCCcEEEEEEcCCCccCCCCccceeeeeeCCcccccCceeEEEecccCCEEEEEecCceEEEEecccceeeeeec
Confidence            4433   378999998532   0 11    01 11111223335566777777888889999999999999999987754


Q ss_pred             c-CCceeEEEecc
Q 021399          231 T-ERPVNAVTMSP  242 (313)
Q Consensus       231 ~-~~~~~~~~~~p  242 (313)
                      - ...+...+-+.
T Consensus       298 Is~~~iF~t~~~~  310 (494)
T 1bpo_A          298 ISGETIFVTAPHE  310 (494)
T ss_dssp             CCSSCEEEEEEET
T ss_pred             ccCCceEEecccC
Confidence            2 33455444433

>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*

Probab=94.15  E-value=0.48  Score=36.95  Aligned_cols=66  Identities=8%  Similarity=-0.037  Sum_probs=39.6

Q ss_pred             cceeEEEEccCCCEEEEeeCCCCeEEEeCCCCcE------EEEec--CCCCceEEEEECCCCCeEEEeeCCCcEEEEEC
Q 021399           11 RPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGER------LGTYR--GHNGAVWCCDVSRDSMTLITGSADQTAKLWNV   81 (313)
Q Consensus        11 ~~v~~~~fs~~g~~l~s~s~d~~i~iw~~~~~~~------~~~~~--~H~~~V~~~~~~~~~~~l~s~s~D~~v~vWd~   81 (313)
                      ..+..++|+|+|.+.+.  .+|.+.--+..+...      -..+-  +-.. -.++.|.|+|.+.++  .||.|.-|+.
T Consensus        41 ~~~~~laf~P~G~LYaV--~~G~Ly~~~~~t~~~~~W~~s~t~IG~~Gw~~-F~a~~fD~~G~LYav--~dG~iyr~~p  114 (236)
T 1tl2_A           41 SNFKFLFLSPGGELYGV--LNDKIYKGTPPTHDNDNWMGRAKKIGNGGWNQ-FQFLFFDPNGYLYAV--SKDKLYKASP  114 (236)
T ss_dssp             TTCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHCEEEECSCGGG-CSEEEECTTSCEEEE--ETTEEEEESC
T ss_pred             ccceeEEECCCccEEEE--eCCeEEEECCCCCCcccccccccEeccccccc-ceEEEECCCCCEEEe--CCCEEEEeCC
Confidence            36779999999986665  556544444323111      01110  1111 257889999987776  6698887775

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*

Probab=93.72  E-value=4  Score=37.26  Aligned_cols=205  Identities=10%  Similarity=-0.026  Sum_probs=104.6

Q ss_pred             ccceeEEEEccCCCEEEEee-CCCCeEEEeCCCCcE-EEEecCCCCceEEEEECCCCC-eEEEeeCCCcEEEEECCCCeE
Q 021399           10 ERPLTYLKYNKDGDLLFSCA-KDHTPTVWFADNGER-LGTYRGHNGAVWCCDVSRDSM-TLITGSADQTAKLWNVETGAQ   86 (313)
Q Consensus        10 ~~~v~~~~fs~~g~~l~s~s-~d~~i~iw~~~~~~~-~~~~~~H~~~V~~~~~~~~~~-~l~s~s~D~~v~vWd~~~~~~   86 (313)
                      .+.+..+.|++.+..|+-+. ..+.|..++.+.... ...+..--.....+++.+.++ ++++-...+.|.+.++.....
T Consensus        39 ~~~~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~~~~~v~~~~~~~P~GlAvD~~~~~ly~~d~~~~~I~v~~~dG~~~  118 (619)
T 3s94_A           39 LEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLR  118 (619)
T ss_dssp             CSCEEEEEEETTTTEEEEEETTTTEEEEEEC-----CEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC
T ss_pred             CCceEEEEEEeCCCEEEEEECCCCeEEEEEccCCCceEEEEeCCCCCcCeEEEEecCCEEEEEeCCCCEEEEEECCCCCE
Confidence            34466788888666666554 356677777664432 223333235678899988544 555556678999999876543


Q ss_pred             EEEe-cCCCCeeEEEeecC-CeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEccCCCEEEEe
Q 021399           87 LFTF-NFDSPARSVDFAVG-DKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISA  164 (313)
Q Consensus        87 ~~~~-~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~t~  164 (313)
                      .... ..-..+..+.+.+. +.+.+.....      ...+....   .+..... ......-...+.+++++.+..|..+
T Consensus       119 ~~l~~~~l~~P~~Iavdp~~g~ly~tD~g~------~~~I~r~~---~dG~~~~-~l~~~~~~~P~Glald~~~~~LY~a  188 (619)
T 3s94_A          119 KVLFWQELDQPRAIALDPSSGFMYWTDWGE------VPKIERAG---MDGSSRF-IIINSEIYWPNGLTLDYEEQKLYWA  188 (619)
T ss_dssp             EEEECSSCSCCCCEEEETTTTEEEEEECSS------SCEEEEEE---TTSCSCE-EEECSSCSSEEEEEEETTTTEEEEE
T ss_pred             EEEEeCCCCCCceEEEecCCCeEEEeccCC------CCEEEEEE---CCCCceE-EEEeCCCCCCcEEEEEccCCEEEEE
Confidence            3322 22233445666653 3443332110      00111111   1111111 1122223345778888765555444


Q ss_pred             -eCCCeEEEEECCCCceeeecccccCceeceEEEEECCCCCEEEEeeCCCcEEEEECCCCcEEEE
Q 021399          165 -GEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKT  228 (313)
Q Consensus       165 -~~d~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~  228 (313)
                       ...+.|...|+.... .+.+..  +.......+++..+ ..+.+-...+.|...|..+++....
T Consensus       189 D~~~~~I~~~~~dG~~-~~~~~~--~~~~~P~gi~~~~~-~ly~td~~~~~V~~~d~~tg~~~~~  249 (619)
T 3s94_A          189 DAKLNFIHKSNLDGTN-RQAVVK--GSLPHPFALTLFED-ILYWTDWSTHSILACNKYTGEGLRE  249 (619)
T ss_dssp             ETTTCCEEEESSSCCE-EC-----------CCCEEESSS-EEEEECTTTCSEEEEESSSCCCCEE
T ss_pred             eCCCCeEEEecCCCCc-cEEEEe--CCCCCceEEEEeCC-EEEEecCCCCEEEEEECCCCcccEE
Confidence             456778888875432 222211  11223346666655 4555555678899999887754433

>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A

Probab=93.68  E-value=1.7  Score=37.51  Aligned_cols=101  Identities=11%  Similarity=0.031  Sum_probs=65.9

Q ss_pred             ceEEEEEccCCCEEEEeeCCCeEEEEECCCCce----------ee--eccc--cc-CceeceEEEEECCC---CCEEEEe
Q 021399          148 RINRAVWGPLNRTIISAGEDAIVRIWDTETGKL----------LK--ESDK--ET-GHKKTITSLAKAAD---GSHFLTG  209 (313)
Q Consensus       148 ~i~~~~~~~~~~~i~t~~~d~~i~lwd~~~~~~----------~~--~~~~--~~-~h~~~v~~~~~s~~---~~~l~s~  209 (313)
                      .+..+..+|+|+++|..+ +..|.|..+..+..          ++  .+..  .. .....|..+.|+|-   +..|++-
T Consensus        67 ~i~qlvlSpsG~lLAl~g-~~~V~Vv~LP~~~~~~~~~~~~~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVL  145 (452)
T 3pbp_A           67 DTFHVISSTSGDLLCLFN-DNEIFVMEVPWGYSNVEDVSIQDAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVL  145 (452)
T ss_dssp             TTCEEEECTTSSEEEEEC-SSEEEEEECCTTCSCCCCHHHHHTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEE
T ss_pred             ceeEEEECCCCCEEEEec-CCeEEEEEecCccccCcccccccccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEE
Confidence            567788999999988876 45788888763321          11  1110  00 02467999999985   5589999


Q ss_pred             eCCCcEEEEECCCC--cEEEEEe------c----CCceeEEEeccCCCEEEEc
Q 021399          210 SLDKSAKLWDARTL--ELIKTYV------T----ERPVNAVTMSPLLDHVVLG  250 (313)
Q Consensus       210 s~dg~i~iwd~~~~--~~~~~~~------~----~~~~~~~~~~p~~~~~~~~  250 (313)
                      ..|++||+||+...  ++. .+.      .    ...+.+++|.+++=.+++.
T Consensus       146 tsD~~Ir~yDl~~s~~~P~-~L~k~~~~fg~d~~~~ev~S~~Fg~~~lTLYvl  197 (452)
T 3pbp_A          146 KEDDTITMFDILNSQEKPI-VLNKPNNSFGLDARVNDITDLEFSKDGLTLYCL  197 (452)
T ss_dssp             ETTSCEEEEETTCTTSCCE-EESCCCSEEESCSSCCCEEEEEECTTSSCEEEE
T ss_pred             ecCCEEEEEEcccCCCCCc-chhccccccCCCcccceEEEEEEcCCCcEEEEE
Confidence            99999999999852  222 221      1    1356778888766555553

>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A

Probab=93.32  E-value=3.6  Score=35.51  Aligned_cols=163  Identities=13%  Similarity=0.112  Sum_probs=91.8

Q ss_pred             ccCCCEEEEeeCCCCeEEEeCCCCcEEEEecCC----CCceEEEEECCCCCeEEEeeCCCcEEEEECCCCeEEEEecCCC
Q 021399           19 NKDGDLLFSCAKDHTPTVWFADNGERLGTYRGH----NGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFNFDS   94 (313)
Q Consensus        19 s~~g~~l~s~s~d~~i~iw~~~~~~~~~~~~~H----~~~V~~~~~~~~~~~l~s~s~D~~v~vWd~~~~~~~~~~~~~~   94 (313)
                      ..+|..|+.+- +..||.-++.+....+.++--    -+.|..+..+|+|++|+..+. ..|.|-.+..+...     ..
T Consensus        29 ~~n~t~i~~a~-~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~g~-~~V~Vv~LP~~~~~-----~~  101 (452)
T 3pbp_A           29 SQNGTRIVFIQ-DNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTSGDLLCLFND-NEIFVMEVPWGYSN-----VE  101 (452)
T ss_dssp             ETTTTEEEEEE-TTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTTSSEEEEECS-SEEEEEECCTTCSC-----CC
T ss_pred             EcCCCEEEEEE-CCEEEEEECCCCCcceEEecCcccccCceeEEEECCCCCEEEEecC-CeEEEEEecCcccc-----Cc
Confidence            45666666544 467787677755445555432    125778999999998887654 47777776532100     00


Q ss_pred             CeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEccCC---CEEEEeeCCCeEE
Q 021399           95 PARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLN---RTIISAGEDAIVR  171 (313)
Q Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~---~~i~t~~~d~~i~  171 (313)
                      ..                    ......+.....-++.     .    ..+..+|..+.|+|.+   ..+++-..|+.||
T Consensus       102 ~~--------------------~~~~~~q~~ty~l~~~-----~----~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir  152 (452)
T 3pbp_A          102 DV--------------------SIQDAFQIFHYSIDEE-----E----VGPKSSIKKVLFHPKSYRDSCIVVLKEDDTIT  152 (452)
T ss_dssp             CH--------------------HHHHTTEEEEEEGGGC-----C------CCCCEEEEEECTTBGGGCEEEEEETTSCEE
T ss_pred             cc--------------------ccccccceeEEEcCCc-----c----cCCCCceeEEEeccccCCCCeEEEEecCCEEE
Confidence            00                    0000000000000000     0    1135678999999875   5789999999999


Q ss_pred             EEECCCCc--e--eeec---ccccCceeceEEEEECCCCCEEEEee--CCCcEEE
Q 021399          172 IWDTETGK--L--LKES---DKETGHKKTITSLAKAADGSHFLTGS--LDKSAKL  217 (313)
Q Consensus       172 lwd~~~~~--~--~~~~---~~~~~h~~~v~~~~~s~~~~~l~s~s--~dg~i~i  217 (313)
                      +||+....  +  +.+.   .........+.+++|.+++=.|...+  ..|-|+-
T Consensus       153 ~yDl~~s~~~P~~L~k~~~~fg~d~~~~ev~S~~Fg~~~lTLYvl~~t~~GDIYA  207 (452)
T 3pbp_A          153 MFDILNSQEKPIVLNKPNNSFGLDARVNDITDLEFSKDGLTLYCLNTTEGGDIFA  207 (452)
T ss_dssp             EEETTCTTSCCEEESCCCSEEESCSSCCCEEEEEECTTSSCEEEEECTTSCEEEE
T ss_pred             EEEcccCCCCCcchhccccccCCCcccceEEEEEEcCCCcEEEEEecCCCCCEEE
Confidence            99987522  1  1111   01122336788999998766565544  6677653

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}

Probab=93.10  E-value=3  Score=33.88  Aligned_cols=65  Identities=6%  Similarity=0.078  Sum_probs=38.2

Q ss_pred             CCCEEEEeeCC----CCeEEEeCCCCcEEE--EecCCCCceEEEEECCCCCeEEEeeCC------CcEEEEECCCCeEE
Q 021399           21 DGDLLFSCAKD----HTPTVWFADNGERLG--TYRGHNGAVWCCDVSRDSMTLITGSAD------QTAKLWNVETGAQL   87 (313)
Q Consensus        21 ~g~~l~s~s~d----~~i~iw~~~~~~~~~--~~~~H~~~V~~~~~~~~~~~l~s~s~D------~~v~vWd~~~~~~~   87 (313)
                      +++.++.|+.+    ..+.+||..+.+-..  .+..-...-.++.+  ++++++.||.+      ..+.+||+.+.+=.
T Consensus        55 ~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~  131 (306)
T 3ii7_A           55 DNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPPTPRDSLAACAA--EGKIYTSGGSEVGNSALYLFECYDTRTESWH  131 (306)
T ss_dssp             TTEEEEECCBSSSBCCEEEEEETTTTEEEEEECCSSCCBSCEEEEE--TTEEEEECCBBTTBSCCCCEEEEETTTTEEE
T ss_pred             CCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCCccccceeEEEE--CCEEEEECCCCCCCcEeeeEEEEeCCCCceE
Confidence            66777777755    556778888775322  12111111122222  57778888765      56889998877533

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}

Probab=92.85  E-value=3.2  Score=33.60  Aligned_cols=65  Identities=15%  Similarity=0.154  Sum_probs=35.4

Q ss_pred             CCCEEEEeeCC-------CeEEEEECCCCceeeecccccCceeceEEEEECCCCCEEEEeeCC-----CcEEEEECCCCc
Q 021399          157 LNRTIISAGED-------AIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLD-----KSAKLWDARTLE  224 (313)
Q Consensus       157 ~~~~i~t~~~d-------~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d-----g~i~iwd~~~~~  224 (313)
                      ++..++.||.+       ..+.+||+.+.+ ...+.........-.++.+  ++..++.|+.+     ..+.+||+++.+
T Consensus       155 ~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~-W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~  231 (302)
T 2xn4_A          155 GGLLYAVGGYDVASRQCLSTVECYNATTNE-WTYIAEMSTRRSGAGVGVL--NNLLYAVGGHDGPLVRKSVEVYDPTTNA  231 (302)
T ss_dssp             TTEEEEECCEETTTTEECCCEEEEETTTTE-EEEECCCSSCCBSCEEEEE--TTEEEEECCBSSSSBCCCEEEEETTTTE
T ss_pred             CCEEEEEeCCCCCCCccccEEEEEeCCCCc-EEECCCCccccccccEEEE--CCEEEEECCCCCCcccceEEEEeCCCCC
Confidence            45566666542       358899987654 2222111111111122222  56778888765     368889998754

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*

Probab=92.52  E-value=6.2  Score=36.09  Aligned_cols=199  Identities=8%  Similarity=-0.041  Sum_probs=109.2

Q ss_pred             cceeEEEEccCCCEEEEe-eCCCCeEEEeCCCCcEEEEecCCCCceEEEEECCCC-CeEEEeeCCCcEEEEECCCCeEEE
Q 021399           11 RPLTYLKYNKDGDLLFSC-AKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDS-MTLITGSADQTAKLWNVETGAQLF   88 (313)
Q Consensus        11 ~~v~~~~fs~~g~~l~s~-s~d~~i~iw~~~~~~~~~~~~~H~~~V~~~~~~~~~-~~l~s~s~D~~v~vWd~~~~~~~~   88 (313)
                      ..+..+.|++.+..|+-+ ..++.|..++.+.......+..--.....+++.+.+ +++++-...+.|.+-++.......
T Consensus        37 ~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~~~v~~~g~~~P~GlAvD~~~~~LY~tD~~~~~I~v~~~dG~~~~~  116 (628)
T 4a0p_A           37 KEASALDFDVTDNRIYWTDISLKTISRAFMNGSALEHVVEFGLDYPEGMAVDWLGKNLYWADTGTNRIEVSKLDGQHRQV  116 (628)
T ss_dssp             SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSTTCEE
T ss_pred             CceEEEEEECCCCEEEEEECCCCeEEEEECCCCCcEEEEeCCCCCcceEEEEeCCCEEEEEECCCCEEEEEecCCCcEEE
Confidence            456789999876666654 456788888876554333333322445678887654 455555567889999987654322


Q ss_pred             Ee-cCCCCeeEEEeec-CCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEccCCCEEEEe-e
Q 021399           89 TF-NFDSPARSVDFAV-GDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISA-G  165 (313)
Q Consensus        89 ~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~t~-~  165 (313)
                      .. ..-..+..+.+.| .+.+.+.....      ...+....   .+.....+  +.......+.+++++.++.|..+ .
T Consensus       117 l~~~~l~~P~~iavdp~~G~lY~tD~g~------~~~I~r~~---~dG~~~~~--l~~~~~~P~GlalD~~~~~LY~aD~  185 (628)
T 4a0p_A          117 LVWKDLDSPRALALDPAEGFMYWTEWGG------KPKIDRAA---MDGSERTT--LVPNVGRANGLTIDYAKRRLYWTDL  185 (628)
T ss_dssp             EECSSCCCEEEEEEETTTTEEEEEECSS------SCEEEEEE---TTSCSCEE--EECSCSSEEEEEEETTTTEEEEEET
T ss_pred             EEeCCCCCcccEEEccCCCeEEEeCCCC------CCEEEEEe---CCCCceEE--EECCCCCcceEEEccccCEEEEEEC
Confidence            22 2223456777776 34444432210      01111111   11111111  11233456788898875555444 5


Q ss_pred             CCCeEEEEECCCCceeeecccccCceeceEEEEECCCCCEEEEeeCCCcEEEEECCCCcE
Q 021399          166 EDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLEL  225 (313)
Q Consensus       166 ~d~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~  225 (313)
                      ..+.|...|+..... ..+..   .-.....+++.. +..+.+-...+.|...|..+++.
T Consensus       186 ~~~~I~~~d~dG~~~-~v~~~---~l~~P~glav~~-~~ly~tD~~~~~I~~~dk~tg~~  240 (628)
T 4a0p_A          186 DTNLIESSNMLGLNR-EVIAD---DLPHPFGLTQYQ-DYIYWTDWSRRSIERANKTSGQN  240 (628)
T ss_dssp             TTTEEEEEETTSCSC-EEEEE---CCSCEEEEEEET-TEEEEEETTTTEEEEEETTTCCS
T ss_pred             CCCEEEEEcCCCCce-EEeec---cCCCceEEEEEC-CEEEEecCCCCEEEEEECCCCCc
Confidence            667899999864332 22211   122345666654 44555555578888888776654

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=92.06  E-value=8.1  Score=36.41  Aligned_cols=181  Identities=7%  Similarity=-0.071  Sum_probs=93.2

Q ss_pred             CCCCeEEEeCCCCcEEEEecCCCCceEEEEECCC-CCeEEEeeCCCcEEEEECCCC----eEEEEec-CCCCeeEEEeec
Q 021399           30 KDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRD-SMTLITGSADQTAKLWNVETG----AQLFTFN-FDSPARSVDFAV  103 (313)
Q Consensus        30 ~d~~i~iw~~~~~~~~~~~~~H~~~V~~~~~~~~-~~~l~s~s~D~~v~vWd~~~~----~~~~~~~-~~~~~~~~~~~~  103 (313)
                      ....|+..++.......... ....+.+++|++. +.++++-...+.|+.+++...    .....+. .......+++..
T Consensus       402 n~~~Ir~i~l~~~~~~~l~~-~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~GLAvD~  480 (791)
T 3m0c_C          402 NRHEVRKMTLDRSEYTSLIP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDW  480 (791)
T ss_dssp             CBSSEEEECTTSCCCEEEEC-SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEET
T ss_pred             cccceeEeeccCCcceeeec-CCCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCcceeeeee
Confidence            34567777776554433333 3456778999875 445566566788998988753    1122222 122333455543


Q ss_pred             -CCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEccCCCEEEEee-CC-CeEEEEECCCCce
Q 021399          104 -GDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAG-ED-AIVRIWDTETGKL  180 (313)
Q Consensus       104 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~t~~-~d-~~i~lwd~~~~~~  180 (313)
                       ++.+.+.....     .  .+..+.   .+ +......+.........+++.|...+|..+. .. +.|...++.... 
T Consensus       481 ~~~~LY~tD~~~-----~--~I~v~~---ld-G~~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~-  548 (791)
T 3m0c_C          481 IHSNIYWTDSVL-----G--TVSVAD---TK-GVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVD-  548 (791)
T ss_dssp             TTTEEEEEETTT-----T--EEEEEE---TT-SSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCC-
T ss_pred             cCCcEEEEecCC-----C--eEEEEe---CC-CCeEEEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCc-
Confidence             33444432211     0  111110   00 1111122222334567888888755444433 33 788888886432 


Q ss_pred             eeecccccCceeceEEEEECCCCCEEEEee-CCCcEEEEECCCCcE
Q 021399          181 LKESDKETGHKKTITSLAKAADGSHFLTGS-LDKSAKLWDARTLEL  225 (313)
Q Consensus       181 ~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s-~dg~i~iwd~~~~~~  225 (313)
                      ...+..  ..-.....|++++.+..|+.+. ..+.|...+++....
T Consensus       549 ~~~lv~--~~l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG~~~  592 (791)
T 3m0c_C          549 IYSLVT--ENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNR  592 (791)
T ss_dssp             EEEEEC--SSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC
T ss_pred             eEEEEe--CCCCCceEEEEecCCCeEEEEeCCCCcEEEEecCCCce
Confidence            222211  1224678899997766666554 456788888865433

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=91.78  E-value=5.6  Score=33.98  Aligned_cols=186  Identities=9%  Similarity=-0.043  Sum_probs=97.7

Q ss_pred             CEEEEeeCCCCeEEEeCCCCcEEEEecCCCCceEEEEECCCCC-eEEEeeCCCcEEEEECCCC----eEEEEec-CCCCe
Q 021399           23 DLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSM-TLITGSADQTAKLWNVETG----AQLFTFN-FDSPA   96 (313)
Q Consensus        23 ~~l~s~s~d~~i~iw~~~~~~~~~~~~~H~~~V~~~~~~~~~~-~l~s~s~D~~v~vWd~~~~----~~~~~~~-~~~~~   96 (313)
                      .+|+.+. ...|+..+++.......+. .-..+.+++|++.++ ++++-...+.|+.+++...    ....... .....
T Consensus        84 ~~ll~~~-~~~I~~i~l~~~~~~~~~~-~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p  161 (400)
T 3p5b_L           84 AYLFFTN-RHEVRKMTLDRSEYTSLIP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAP  161 (400)
T ss_dssp             CEEEEEE-TTEEEEECTTSCSCEEEEC-SCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCSCE
T ss_pred             ceeEEec-cceeEEEccCCcceeEecc-ccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCc
Confidence            3444443 4677888877665433333 345678999998655 4455456788988988652    1222222 22234


Q ss_pred             eEEEeec-CCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEccCCCEEEEee-C-CCeEEEE
Q 021399           97 RSVDFAV-GDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAG-E-DAIVRIW  173 (313)
Q Consensus        97 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~t~~-~-d~~i~lw  173 (313)
                      ..+.+.. ++.+.+.....     .  .+...  + . .+......+.........+++.|.+..|.... . .+.|...
T Consensus       162 ~glavD~~~~~lY~~d~~~-----~--~I~~~--~-~-~g~~~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~  230 (400)
T 3p5b_L          162 DGLAVDWIHSNIYWTDSVL-----G--TVSVA--D-T-KGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKG  230 (400)
T ss_dssp             EEEEEETTTTEEEEEETTT-----T--EEEEE--C-T-TTCSEEEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEE
T ss_pred             ccEEEEecCCceEEEECCC-----C--eEEEE--e-C-CCCceEEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEE
Confidence            4555554 44444443211     0  01000  0 0 01111222222333457788888655554443 2 4788888


Q ss_pred             ECCCCceeeecccccCceeceEEEEECCCCCEEEEee-CCCcEEEEECCCCc
Q 021399          174 DTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGS-LDKSAKLWDARTLE  224 (313)
Q Consensus       174 d~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s-~dg~i~iwd~~~~~  224 (313)
                      ++..... ..+..  ..-.....+++++++..|..+. ..+.|..+|++...
T Consensus       231 ~~dG~~~-~~~~~--~~l~~P~glavd~~~~~lY~aD~~~~~I~~~d~dG~~  279 (400)
T 3p5b_L          231 GLNGVDI-YSLVT--ENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGN  279 (400)
T ss_dssp             ETTSCSC-EEEEC--SSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCC
T ss_pred             eCCCCcc-EEEEE--CCCCceEEEEEEeCCCEEEEEECCCCEEEEEeCCCCc
Confidence            8764322 22211  1224678899998777766654 46778899987543

>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A

Probab=91.60  E-value=6.5  Score=34.32  Aligned_cols=105  Identities=10%  Similarity=0.208  Sum_probs=57.7

Q ss_pred             CceEEEEEccCCCEEEEeeCCCeEEEEECCCCce--eeeccccc---CceeceEEEEECCC----CCEEEEeeC------
Q 021399          147 GRINRAVWGPLNRTIISAGEDAIVRIWDTETGKL--LKESDKET---GHKKTITSLAKAAD----GSHFLTGSL------  211 (313)
Q Consensus       147 ~~i~~~~~~~~~~~i~t~~~d~~i~lwd~~~~~~--~~~~~~~~---~h~~~v~~~~~s~~----~~~l~s~s~------  211 (313)
                      .....++|.|+++.+++--..+.|++++..+++.  +..+....   ........++++|+    +...++-+.      
T Consensus        27 ~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~~~  106 (454)
T 1cru_A           27 NKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKST  106 (454)
T ss_dssp             SSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC-
T ss_pred             CCceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccCCC
Confidence            3456889999998666544445799888654432  22221110   12456789999994    444444432      


Q ss_pred             ------CCcEEEEECCCC-------cEEE-EEec--CCceeEEEeccCCCEEEEccc
Q 021399          212 ------DKSAKLWDARTL-------ELIK-TYVT--ERPVNAVTMSPLLDHVVLGGG  252 (313)
Q Consensus       212 ------dg~i~iwd~~~~-------~~~~-~~~~--~~~~~~~~~~p~~~~~~~~~~  252 (313)
                            ...|.-|+....       +.+. .+..  .+....++|.|++. ++++.|
T Consensus       107 ~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~-Lyv~~G  162 (454)
T 1cru_A          107 DKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQK-IYYTIG  162 (454)
T ss_dssp             -CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSC-EEEEEC
T ss_pred             ccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCe-EEEEEC
Confidence                  124444544321       1111 1211  23478899999986 444433

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=91.27  E-value=7.3  Score=39.26  Aligned_cols=202  Identities=10%  Similarity=0.052  Sum_probs=102.3

Q ss_pred             EEEccCCCEEEEeeCCCCeEEEeCCCCcEEEEecCCCCceEEEEEC-CCCCeEEEeeCCCcEEEEECCCC-eEEEEecC-
Q 021399           16 LKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVS-RDSMTLITGSADQTAKLWNVETG-AQLFTFNF-   92 (313)
Q Consensus        16 ~~fs~~g~~l~s~s~d~~i~iw~~~~~~~~~~~~~H~~~V~~~~~~-~~~~~l~s~s~D~~v~vWd~~~~-~~~~~~~~-   92 (313)
                      .-.+|..+.|+--. ..++.|+|+++...++.+.-.+ .|.-=.|- ++.--++|.   ..|.-|++.+. .++..+.. 
T Consensus        71 AIMnP~~~iiALra-g~~lQiFnl~~k~klks~~~~e-~VvfWkWis~~~l~lVT~---~aVyHW~~~~~s~P~k~fdR~  145 (1630)
T 1xi4_A           71 AIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMTD-DVTFWKWISLNTVALVTD---NAVYHWSMEGESQPVKMFDRH  145 (1630)
T ss_pred             hccCCCcceEEEec-CCeEEEeehHHhhhhcccccCC-CceEEEecCCCeeEEEcC---CeEEEeccCCCCccHHHHhcc
Confidence            45677777777654 7899999999887766665544 45444453 433234443   47999999642 23222221 


Q ss_pred             ----CCCeeEEEeecCCeEEEEEC--CCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEc--cC-CCEEEE
Q 021399           93 ----DSPARSVDFAVGDKLAVITT--DPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWG--PL-NRTIIS  163 (313)
Q Consensus        93 ----~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~-~~~i~t  163 (313)
                          ...+......++.+.+++..  ..-..+.+.+.+..+.+.       ....++||-+........  +. ...++.
T Consensus       146 ~~L~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er~-------~sQ~iegha~~F~~~~~~~~~~~~~l~~f  218 (1630)
T 1xi4_A          146 SSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRK-------VSQPIEGHAASFAQFKMEGNAEESTLFCF  218 (1630)
T ss_pred             hhcccCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeecccc-------cchhhhHhHhhhheeccCCCCCCceEEEE
Confidence                12233333444444433321  111122333333333221       112234443322222211  11 122232


Q ss_pred             eeC---CCeEEEEECCCC----ceeee-----cccccCceeceEEEEECCCCCEEEEeeCCCcEEEEECCCCcEEEEE
Q 021399          164 AGE---DAIVRIWDTETG----KLLKE-----SDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTY  229 (313)
Q Consensus       164 ~~~---d~~i~lwd~~~~----~~~~~-----~~~~~~h~~~v~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~  229 (313)
                      +..   .++++|.++...    ....+     +.....-.+-..++..++.-..+..-+.-|.|.++|+.|+.++..-
T Consensus       219 ~~~~~~g~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv~~~vs~k~g~iy~itk~G~~~~~d~~t~~~i~~~  296 (1630)
T 1xi4_A          219 AVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMN  296 (1630)
T ss_pred             EEecCCCceEEEEecCCCccCCCCCccccccccCCcccccCcceEEEeccccCEEEEEecCceEEEEecccchhhhhc
Confidence            221   368999987442    11110     0111111222345566777777888889999999999999987654

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A

Probab=91.21  E-value=5.2  Score=32.50  Aligned_cols=65  Identities=12%  Similarity=0.090  Sum_probs=36.5

Q ss_pred             CCCEEEEeeCC-----CeEEEEECCCCceeeecccccCceeceEEEEECCCCCEEEEeeCC-----CcEEEEECCCCc
Q 021399          157 LNRTIISAGED-----AIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLD-----KSAKLWDARTLE  224 (313)
Q Consensus       157 ~~~~i~t~~~d-----~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d-----g~i~iwd~~~~~  224 (313)
                      ++..++.||.+     ..+.++|+.+.+ ...+.........-.++.+  ++..++.|+.+     ..+.+||+++.+
T Consensus       168 ~~~iyv~GG~~~~~~~~~~~~yd~~~~~-W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~~  242 (308)
T 1zgk_A          168 NRLLYAVGGFDGTNRLNSAECYYPERNE-WRMITAMNTIRSGAGVCVL--HNCIYAAGGYDGQDQLNSVERYDVETET  242 (308)
T ss_dssp             TTEEEEECCBCSSCBCCCEEEEETTTTE-EEECCCCSSCCBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETTTTE
T ss_pred             CCEEEEEeCCCCCCcCceEEEEeCCCCe-EeeCCCCCCccccceEEEE--CCEEEEEeCCCCCCccceEEEEeCCCCc
Confidence            45666777654     458889987653 2222111111111222233  67777888765     458899998764

>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}

Probab=90.96  E-value=4.7  Score=33.66  Aligned_cols=66  Identities=17%  Similarity=0.095  Sum_probs=44.7

Q ss_pred             CEEEEeeCCCCeEEEeCCCCcEEEEecCC-CCceEEEEEC--C-CCCeEEEe-eCCCcEEEEECCCCeEEE
Q 021399           23 DLLFSCAKDHTPTVWFADNGERLGTYRGH-NGAVWCCDVS--R-DSMTLITG-SADQTAKLWNVETGAQLF   88 (313)
Q Consensus        23 ~~l~s~s~d~~i~iw~~~~~~~~~~~~~H-~~~V~~~~~~--~-~~~~l~s~-s~D~~v~vWd~~~~~~~~   88 (313)
                      ..++.++.||.|.-.|.++|+.+.+++.- ..++....-.  + ++..++.. ..||.+..++..++...+
T Consensus        11 ~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~   81 (339)
T 2be1_A           11 DILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKL   81 (339)
T ss_dssp             EEEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEE
T ss_pred             CEEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEe
Confidence            47788999999999999999999988754 1223221100  1 23344343 689999999988875543

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}

Probab=90.88  E-value=5.4  Score=32.14  Aligned_cols=65  Identities=9%  Similarity=0.083  Sum_probs=37.2

Q ss_pred             cCCCEEEEeeCC-----CCeEEEeCCCCc---EE--EEecCCCCceEEEEECCCCCeEEEeeCC-----CcEEEEECCCC
Q 021399           20 KDGDLLFSCAKD-----HTPTVWFADNGE---RL--GTYRGHNGAVWCCDVSRDSMTLITGSAD-----QTAKLWNVETG   84 (313)
Q Consensus        20 ~~g~~l~s~s~d-----~~i~iw~~~~~~---~~--~~~~~H~~~V~~~~~~~~~~~l~s~s~D-----~~v~vWd~~~~   84 (313)
                      .+++.++.|+.+     ..+.+||..+.+   -.  ..+......-.++.+  ++++++.||.+     ..+.++|+.+.
T Consensus        61 ~~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~d~~~~  138 (301)
T 2vpj_A           61 LHDRIYVIGGYDGRSRLSSVECLDYTADEDGVWYSVAPMNVRRGLAGATTL--GDMIYVSGGFDGSRRHTSMERYDPNID  138 (301)
T ss_dssp             ETTEEEEECCBCSSCBCCCEEEEETTCCTTCCCEEECCCSSCCBSCEEEEE--TTEEEEECCBCSSCBCCEEEEEETTTT
T ss_pred             ECCEEEEEcCCCCCccCceEEEEECCCCCCCeeEECCCCCCCccceeEEEE--CCEEEEEcccCCCcccceEEEEcCCCC
Confidence            357777777755     357888888766   22  111111111122222  56777777754     35788898776


Q ss_pred             eE
Q 021399           85 AQ   86 (313)
Q Consensus        85 ~~   86 (313)
                      +-
T Consensus       139 ~W  140 (301)
T 2vpj_A          139 QW  140 (301)
T ss_dssp             EE
T ss_pred             eE
Confidence            53

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=90.47  E-value=6.5  Score=32.36  Aligned_cols=176  Identities=8%  Similarity=-0.022  Sum_probs=90.3

Q ss_pred             CCCeEEEeCCCCc--EEEEecCCCCceEEEEECCC-CCeEEEeeCCCcEEEEECCCCeE---EEEecCCCCeeEEEeec-
Q 021399           31 DHTPTVWFADNGE--RLGTYRGHNGAVWCCDVSRD-SMTLITGSADQTAKLWNVETGAQ---LFTFNFDSPARSVDFAV-  103 (313)
Q Consensus        31 d~~i~iw~~~~~~--~~~~~~~H~~~V~~~~~~~~-~~~l~s~s~D~~v~vWd~~~~~~---~~~~~~~~~~~~~~~~~-  103 (313)
                      ...|+..+++...  ....+.+ -....+++|++. +.++.+-...+.|..+++.....   +...... ....+.+.+ 
T Consensus        12 ~~~I~~i~l~~~~~~~~~~~~~-~~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l~-~p~glavd~~   89 (318)
T 3sov_A           12 RRDLRLVDATNGKENATIVVGG-LEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLL-SPDGLACDWL   89 (318)
T ss_dssp             EEEEEEEETTCTTSCCEEEEEE-EEEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEECCS-CCCEEEEETT
T ss_pred             cCeEEEEECCCCceEEEEEecC-CCccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcCCCC-CccEEEEEcC
Confidence            4677888887653  1111221 234668899875 44555555678899999876531   1111122 233444443 


Q ss_pred             CCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEccCCCEEEEee--CCCeEEEEECCCCcee
Q 021399          104 GDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAG--EDAIVRIWDTETGKLL  181 (313)
Q Consensus       104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~t~~--~d~~i~lwd~~~~~~~  181 (313)
                      ++.+.+.....     .  .+....  . + +................+++.|.+..+..+.  ..+.|...++.-.. .
T Consensus        90 ~g~ly~~d~~~-----~--~I~~~~--~-d-G~~~~~l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~-~  157 (318)
T 3sov_A           90 GEKLYWTDSET-----N--RIEVSN--L-D-GSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSS-R  157 (318)
T ss_dssp             TTEEEEEETTT-----T--EEEEEE--T-T-SCSCEEEECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCS-C
T ss_pred             CCeEEEEECCC-----C--EEEEEE--C-C-CCcEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCC-e
Confidence            34443332211     0  000000  0 0 0111111222334457788888655554444  35788888875322 2


Q ss_pred             eecccccCceeceEEEEECCCCCEEEEe-eCCCcEEEEECCC
Q 021399          182 KESDKETGHKKTITSLAKAADGSHFLTG-SLDKSAKLWDART  222 (313)
Q Consensus       182 ~~~~~~~~h~~~v~~~~~s~~~~~l~s~-s~dg~i~iwd~~~  222 (313)
                      ..+..  ..-.....+++++++..|.-+ +..+.|..+|++.
T Consensus       158 ~~~~~--~~l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~dG  197 (318)
T 3sov_A          158 FIIIN--SEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDG  197 (318)
T ss_dssp             EEEEC--SSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred             EEEEE--CCCCCccEEEEeccCCEEEEEECCCCEEEEEcCCC
Confidence            22111  112356889999866665554 4567889999874

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=90.20  E-value=2.4  Score=39.38  Aligned_cols=161  Identities=9%  Similarity=-0.065  Sum_probs=76.2

Q ss_pred             ceeEEEEccCC-CEEEEeeCCCCeEEEeCCCCcEEEEecCCCCceEEEEECCCCC-eEEEeeCC-CcEEEEECCCCeEEE
Q 021399           12 PLTYLKYNKDG-DLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSM-TLITGSAD-QTAKLWNVETGAQLF   88 (313)
Q Consensus        12 ~v~~~~fs~~g-~~l~s~s~d~~i~iw~~~~~~~~~~~~~H~~~V~~~~~~~~~~-~l~s~s~D-~~v~vWd~~~~~~~~   88 (313)
                      .+..+++++.+ .++++-...+.|.+.+.+.......+...-.....++++|.+. ++++-... +.|.+.++.......
T Consensus       454 ~P~glavD~~~g~LY~tD~~~~~I~v~d~dg~~~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~~~  533 (699)
T 1n7d_A          454 APDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYS  533 (699)
T ss_dssp             -CCCEECCCSSSBCEECCTTTSCEEEEBSSSCCEEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCCCE
T ss_pred             CcceEEEEeeCCcEEEEeccCCeEEEEecCCCceEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCeeE
Confidence            34578888554 4444445668888888765543333332223456788988654 44443222 677777765432222


Q ss_pred             EecC-CCCeeEEEeecC-CeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEec--CCCCceEEEEEccCCCEEEEe
Q 021399           89 TFNF-DSPARSVDFAVG-DKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILK--GPQGRINRAVWGPLNRTIISA  164 (313)
Q Consensus        89 ~~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~i~~~~~~~~~~~i~t~  164 (313)
                      .... -.....+.+.+. ..+.++-...       ..+..+..   +..... ..+.  ........+++.. +..+++.
T Consensus       534 l~~~~l~~PnGlavd~~~~~LY~aD~~~-------~~I~~~d~---dG~~~~-~~~~~~~~~~~P~glavd~-~~lywtd  601 (699)
T 1n7d_A          534 LVTENIQWPNGITLDLLSGRLYWVDSKL-------HSISSIDV---NGGNRK-TILEDEKRLAHPFSLAVFE-DKVFWTD  601 (699)
T ss_dssp             ESCSSCSSCCCEEECTTTCCEEEEETTT-------TEEEEECS---SSSCCE-EECCCSSSCSSCCCCEEET-TEEEEEC
T ss_pred             EEeCCCCCccEEEEeccCCEEEEEecCC-------CeEEEEcc---CCCceE-EEEecCCcCCCceEeEEEC-CEEEEEe
Confidence            2111 122345666654 3343332211       00111100   000111 1111  0111112233333 3456666


Q ss_pred             eCCCeEEEEECCCCceeeec
Q 021399          165 GEDAIVRIWDTETGKLLKES  184 (313)
Q Consensus       165 ~~d~~i~lwd~~~~~~~~~~  184 (313)
                      ...+.|..+|..+++.+..+
T Consensus       602 ~~~~~V~~~d~~~G~~~~~i  621 (699)
T 1n7d_A          602 IINEAIFSANRLTGSDVNLL  621 (699)
T ss_dssp             STTTCEEEEETTTEEEEECC
T ss_pred             CCCCeEEEEEccCCCceEEe
Confidence            67788988888777665544

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=89.74  E-value=7.4  Score=31.88  Aligned_cols=202  Identities=8%  Similarity=-0.052  Sum_probs=104.0

Q ss_pred             CCeEEEeCCCCcEEEEecCCCCceEEEEECCCCC-eEEEeeCCCcEEEEECCC----CeEEEEecC-CCCeeEEEeec-C
Q 021399           32 HTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSM-TLITGSADQTAKLWNVET----GAQLFTFNF-DSPARSVDFAV-G  104 (313)
Q Consensus        32 ~~i~iw~~~~~~~~~~~~~H~~~V~~~~~~~~~~-~l~s~s~D~~v~vWd~~~----~~~~~~~~~-~~~~~~~~~~~-~  104 (313)
                      ..|+..|++..+....+.. -....+++|++.++ ++++-...+.|..+++.+    ......... -.....+.+.+ +
T Consensus        10 ~~I~~i~~~~~~~~~~~~~-~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavd~~~   88 (316)
T 1ijq_A           10 HEVRKMTLDRSEYTSLIPN-LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIH   88 (316)
T ss_dssp             SSEEEEETTSCCCEEEECS-CSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTT
T ss_pred             CeEEEEECCCcceEehhcC-CCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCcCEEEEeecC
Confidence            5678888887665444443 34567899998654 555555678999999875    221222221 12334555553 4


Q ss_pred             CeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEccCCCEEEEee-CC-CeEEEEECCCCceee
Q 021399          105 DKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAG-ED-AIVRIWDTETGKLLK  182 (313)
Q Consensus       105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~t~~-~d-~~i~lwd~~~~~~~~  182 (313)
                      +.+.+.....     ..+..  +.  . + +................+++.|.+..+..+. .. +.|...++.- ....
T Consensus        89 ~~ly~~d~~~-----~~I~~--~~--~-~-g~~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG-~~~~  156 (316)
T 1ijq_A           89 SNIYWTDSVL-----GTVSV--AD--T-K-GVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNG-VDIY  156 (316)
T ss_dssp             TEEEEEETTT-----TEEEE--EE--T-T-SSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTS-CCEE
T ss_pred             CeEEEEECCC-----CEEEE--Ee--C-C-CCceEEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCC-CCeE
Confidence            4444432211     00110  00  0 0 1111112222234557888888665554443 33 6888888753 3222


Q ss_pred             ecccccCceeceEEEEECCCCCEEEEee-CCCcEEEEECCCCcEEEEEec----CCceeEEEeccCCCEEEEcc
Q 021399          183 ESDKETGHKKTITSLAKAADGSHFLTGS-LDKSAKLWDARTLELIKTYVT----ERPVNAVTMSPLLDHVVLGG  251 (313)
Q Consensus       183 ~~~~~~~h~~~v~~~~~s~~~~~l~s~s-~dg~i~iwd~~~~~~~~~~~~----~~~~~~~~~~p~~~~~~~~~  251 (313)
                      .+..  ..-.....+++++++..|..+. ..+.|..+|++.... +.+..    ......+++.  .+.++.+.
T Consensus       157 ~~~~--~~~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg~~~-~~~~~~~~~~~~P~giav~--~~~ly~~d  225 (316)
T 1ijq_A          157 SLVT--ENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNR-KTILEDEKRLAHPFSLAVF--EDKVFWTD  225 (316)
T ss_dssp             EEEC--SSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-EEEEECTTTTSSEEEEEEE--TTEEEEEE
T ss_pred             EEEE--CCCCCceEEEEeccCCEEEEEECCCCeEEEEecCCCce-EEEeecCCccCCcEEEEEE--CCEEEEEE
Confidence            2211  1224578899998777665554 567899999874322 22221    1224556653  35565553

>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A

Probab=88.68  E-value=10  Score=33.04  Aligned_cols=104  Identities=10%  Similarity=0.091  Sum_probs=61.5

Q ss_pred             ccceeEEEEccCCCEEEEeeCCCCeEEEeCCCCcE--EEEecC------CCCceEEEEECCC----CCeEEEeeC-----
Q 021399           10 ERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGER--LGTYRG------HNGAVWCCDVSRD----SMTLITGSA-----   72 (313)
Q Consensus        10 ~~~v~~~~fs~~g~~l~s~s~d~~i~iw~~~~~~~--~~~~~~------H~~~V~~~~~~~~----~~~l~s~s~-----   72 (313)
                      -...+.++|.|+|.++++-...+.|++++..+++.  +..+..      ..+....++|+|+    +.+.++-+.     
T Consensus        26 l~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~~  105 (454)
T 1cru_A           26 LNKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKS  105 (454)
T ss_dssp             CSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC
T ss_pred             CCCceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccCC
Confidence            45668999999999888655445688877555543  223321      2456789999995    444444432     


Q ss_pred             -------CCcEEEEECCCC--e-----EEEE-ec--CCCCeeEEEeecCCeEEEEECC
Q 021399           73 -------DQTAKLWNVETG--A-----QLFT-FN--FDSPARSVDFAVGDKLAVITTD  113 (313)
Q Consensus        73 -------D~~v~vWd~~~~--~-----~~~~-~~--~~~~~~~~~~~~~~~~~~~~~~  113 (313)
                             ...|.-+++...  .     .+.. +.  ..+....+.|.+++.+.+...+
T Consensus       106 ~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv~~Gd  163 (454)
T 1cru_A          106 TDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIGD  163 (454)
T ss_dssp             --CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEECC
T ss_pred             CccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCeEEEEECC
Confidence                   124555554321  1     1111 11  1245678888888877776554

>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1

Probab=87.37  E-value=14  Score=32.16  Aligned_cols=124  Identities=14%  Similarity=0.030  Sum_probs=76.7

Q ss_pred             CCCeEEEEECCCCceee-ecccccCceeceEEEEECCCCCEEEEeeCCCcEEEEECCCCcEEEEEecCCceeEEEeccCC
Q 021399          166 EDAIVRIWDTETGKLLK-ESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTERPVNAVTMSPLL  244 (313)
Q Consensus       166 ~d~~i~lwd~~~~~~~~-~~~~~~~h~~~v~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~p~~  244 (313)
                      ++..|-|.|+.++.... +..       .--+.-.+|..+.||.-. ..++.++|+++.+.+.......++..-.|-...
T Consensus        46 ~~~~vvIiDl~~~~~~~rrpi-------~AdsAIMnP~~~iiALra-g~~lQiFnle~K~klks~~~~e~VvfWkWis~~  117 (494)
T 1bpo_A           46 EQAQVVIIDMNDPSNPIRRPI-------SADSAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMTDDVTFWKWISLN  117 (494)
T ss_dssp             TCCEEEEEETTSTTSCEEEEC-------CCSEEEECSSSSCEEEEE-TTEEEEEETTTTEEEEEEECSSCCCEEEEEETT
T ss_pred             CCCeEEEEECCCCCcceeccc-------ccceeeeCCCCcEEEEec-CCeEEEEchHHhhhhcceecCCCceEEEecCCC
Confidence            44478889988755432 211       111233456666666554 678999999999999998876666655553322


Q ss_pred             CEEEEcccccCceeEeeccCCCceeeeeeehhhhhhhccccccccceeEEEECCCCCeeEEEEE
Q 021399          245 DHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKRYGFLLL  308 (313)
Q Consensus       245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~fspdgk~~~~~~~  308 (313)
                      ..-+++    ...++-|+........+.||...     .+.  +..|....-++|.|+++.+-.
T Consensus       118 ~l~lVT----~taVyHWsi~~~s~P~kvFdR~~-----~L~--~~QIInY~~d~~~kW~~l~GI  170 (494)
T 1bpo_A          118 TVALVT----DNAVYHWSMEGESQPVKMFDRHS-----SLA--GCQIINYRTDAKQKWLLLTGI  170 (494)
T ss_dssp             EEEEEC----SSEEEEEESSSSCCCEEEEECCG-----GGT--TCEEEEEEECTTSSEEEEEEE
T ss_pred             eEEEEc----CCeeEEecccCCCCchhheecch-----hcc--cceEEEEEECCCCCeEEEEee
Confidence            222333    23466666544445566776422     122  468888888999999887654

>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}

Probab=86.79  E-value=4.7  Score=33.67  Aligned_cols=118  Identities=13%  Similarity=0.146  Sum_probs=67.7

Q ss_pred             CeEEEeeCCCcEEEEECCCCeEEEEecCC--CCeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEe
Q 021399           65 MTLITGSADQTAKLWNVETGAQLFTFNFD--SPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLIL  142 (313)
Q Consensus        65 ~~l~s~s~D~~v~vWd~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  142 (313)
                      .+++.++.||.|.-.|..+|+..+.+...  .+...                                           .
T Consensus        11 ~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~-------------------------------------------~   47 (339)
T 2be1_A           11 DILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIE-------------------------------------------I   47 (339)
T ss_dssp             EEEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEE-------------------------------------------C
T ss_pred             CEEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEE-------------------------------------------e
Confidence            36788899999999999999988876532  11100                                           0


Q ss_pred             cCCCCceEEEEEccCCCEEEEe-eCCCeEEEEECCCCceeeeccccc-CceeceEE----EE----ECCCCCEEEEeeCC
Q 021399          143 KGPQGRINRAVWGPLNRTIISA-GEDAIVRIWDTETGKLLKESDKET-GHKKTITS----LA----KAADGSHFLTGSLD  212 (313)
Q Consensus       143 ~~~~~~i~~~~~~~~~~~i~t~-~~d~~i~lwd~~~~~~~~~~~~~~-~h~~~v~~----~~----~s~~~~~l~s~s~d  212 (313)
                      .++...       .++..++.. ..||.|..++..++...-.+.... -....+..    +.    -...+..+++|+.+
T Consensus        48 ~~~~~~-------~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~~~~lv~~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~  120 (339)
T 2be1_A           48 QEPSRL-------ETYETLIIEPFGDGNIYYFNAHQGLQKLPLSIRQLVSTSPLHLKTNIVVNDSGKIVEDEKVYTGSMR  120 (339)
T ss_dssp             CCSCTT-------TSSEEEEECCSTTTEEEEEETTTEEEEEEEEHHHHHTTCSEEEECC----------CCEEEEECEEE
T ss_pred             cCCccc-------cCCcEEEEEECCCCEEEEEECCCCcEEeeeccccceeccccccCCCceeecccccccCCEEEEEecC
Confidence            000000       011223333 578888888887764322111000 00011111    00    00145678999999


Q ss_pred             CcEEEEECCCCcEEEEEecC
Q 021399          213 KSAKLWDARTLELIKTYVTE  232 (313)
Q Consensus       213 g~i~iwd~~~~~~~~~~~~~  232 (313)
                      |++.-.|+++|+.+.++...
T Consensus       121 g~l~ald~~tG~~~W~~~~~  140 (339)
T 2be1_A          121 TIMYTINMLNGEIISAFGPG  140 (339)
T ss_dssp             EEEEEEETTTCCEEEEESTT
T ss_pred             CEEEEEECCCCcEEEEEecC
Confidence            99999999999999888643

>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A

Probab=86.38  E-value=16  Score=31.90  Aligned_cols=104  Identities=12%  Similarity=0.106  Sum_probs=57.1

Q ss_pred             eEEEEEccCCC-EEEEeeCCCeEEEEECCCC---ceeeecccc--c----CceeceEEEEECCC----CCEEEEeeCCC-
Q 021399          149 INRAVWGPLNR-TIISAGEDAIVRIWDTETG---KLLKESDKE--T----GHKKTITSLAKAAD----GSHFLTGSLDK-  213 (313)
Q Consensus       149 i~~~~~~~~~~-~i~t~~~d~~i~lwd~~~~---~~~~~~~~~--~----~h~~~v~~~~~s~~----~~~l~s~s~dg-  213 (313)
                      -..++|.|++. +++++...|.|++++....   ..+..+...  .    ........++++|+    +...++-+.+. 
T Consensus        16 P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~f~~n~~lYv~yt~~~~   95 (463)
T 2wg3_C           16 PVGALHSGDGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPNYKKNGKLYVSYTTNQE   95 (463)
T ss_dssp             EEEEECCSSSSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTTHHHHCEEEEEEEECCC
T ss_pred             ceEEEECCCCCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCCCcCCCEEEEEEeCCCC
Confidence            34677888885 5666778899999975422   112211111  1    12456789999996    55555443211 


Q ss_pred             -----------cEEEEECCC----------CcEEEEEec---CCceeEEEeccCCCEEEEcccc
Q 021399          214 -----------SAKLWDART----------LELIKTYVT---ERPVNAVTMSPLLDHVVLGGGQ  253 (313)
Q Consensus       214 -----------~i~iwd~~~----------~~~~~~~~~---~~~~~~~~~~p~~~~~~~~~~~  253 (313)
                                 .|.-|.+..          .+.+.++..   .+....++|.|++. ++++.|+
T Consensus        96 ~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~~~H~g~~l~fgpDG~-LYv~~Gd  158 (463)
T 2wg3_C           96 RWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELHRKHLGGQLLFGPDGF-LYIILGD  158 (463)
T ss_dssp             SSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESSSSSCEEEEEECTTSC-EEEEECC
T ss_pred             CcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCCCcccCCcEeECCCCc-EEEEeCC
Confidence                       233344431          223333321   23467899999884 5555443

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}

Probab=86.23  E-value=12  Score=30.19  Aligned_cols=62  Identities=10%  Similarity=0.055  Sum_probs=34.1

Q ss_pred             EEEEeeC--CCCeEEEeCCCCcEEE--EecCCCCceEEEEECCCCCeEEEeeCC----CcEEEEECCCCeEE
Q 021399           24 LLFSCAK--DHTPTVWFADNGERLG--TYRGHNGAVWCCDVSRDSMTLITGSAD----QTAKLWNVETGAQL   87 (313)
Q Consensus        24 ~l~s~s~--d~~i~iw~~~~~~~~~--~~~~H~~~V~~~~~~~~~~~l~s~s~D----~~v~vWd~~~~~~~   87 (313)
                      .++.|+.  ...+.+||..+.+-..  .+......-.++.  .++.+++.||.+    ..+.++|+.+.+-.
T Consensus        14 l~~~GG~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~~~~lyv~GG~~~~~~~~~~~~d~~~~~W~   83 (306)
T 3ii7_A           14 RIALFGGSQPQSCRYFNPKDYSWTDIRCPFEKRRDAACVF--WDNVVYILGGSQLFPIKRMDCYNVVKDSWY   83 (306)
T ss_dssp             EEEEECCSSTTSEEEEETTTTEEEECCCCSCCCBSCEEEE--ETTEEEEECCBSSSBCCEEEEEETTTTEEE
T ss_pred             EEEEeCCCCCceEEEecCCCCCEecCCCCCcccceeEEEE--ECCEEEEEeCCCCCCcceEEEEeCCCCeEE
Confidence            4444543  3567788887765321  1111111112222  256777888765    66888898877543

>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}

Probab=84.99  E-value=16  Score=30.56  Aligned_cols=108  Identities=19%  Similarity=0.132  Sum_probs=65.4

Q ss_pred             ccccccceeEEEEccCCCEEEEeeCCCCeEEEeCCCCcE--EEEe----cCCCCceEEEEECCC----CCeEEEe--eCC
Q 021399            6 MKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGER--LGTY----RGHNGAVWCCDVSRD----SMTLITG--SAD   73 (313)
Q Consensus         6 l~~h~~~v~~~~fs~~g~~l~s~s~d~~i~iw~~~~~~~--~~~~----~~H~~~V~~~~~~~~----~~~l~s~--s~D   73 (313)
                      +...-...+.++|.|||.++++--..|.|++++.++++.  +..+    ....+....++++|+    +.+.++-  ..+
T Consensus        27 va~gL~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~~  106 (347)
T 3das_A           27 VATGLNSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSASD  106 (347)
T ss_dssp             EECCCSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECSSS
T ss_pred             eecCCCCceEEEEcCCCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEecCCC
Confidence            344455678999999999888766589999887655543  2222    223566889999995    4444432  244


Q ss_pred             CcEEEEECCCC----------eEEEE-ec--CCCCeeEEEeecCCeEEEEECC
Q 021399           74 QTAKLWNVETG----------AQLFT-FN--FDSPARSVDFAVGDKLAVITTD  113 (313)
Q Consensus        74 ~~v~vWd~~~~----------~~~~~-~~--~~~~~~~~~~~~~~~~~~~~~~  113 (313)
                      +.|.-|.+..+          +.+.. +.  ..+....+.|.+++.+.+...+
T Consensus       107 ~~v~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~Lyvt~Gd  159 (347)
T 3das_A          107 NRIVRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKMLYAGTGE  159 (347)
T ss_dssp             EEEEEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSCEEEECBC
T ss_pred             CEEEEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCCEEEEECC
Confidence            55666665541          22221 11  1234456778887776665443

>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*

Probab=84.98  E-value=16  Score=30.63  Aligned_cols=120  Identities=9%  Similarity=0.112  Sum_probs=64.7

Q ss_pred             CCeEEEEECCCC--c--eeeecccccCceeceEEEEECCCCCEEEEeeC-----------------CCcEEEEECCCCcE
Q 021399          167 DAIVRIWDTETG--K--LLKESDKETGHKKTITSLAKAADGSHFLTGSL-----------------DKSAKLWDARTLEL  225 (313)
Q Consensus       167 d~~i~lwd~~~~--~--~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~-----------------dg~i~iwd~~~~~~  225 (313)
                      +..|.+|++...  .  .+.++..  ..-...++++..++|.+.++...                 .|.|.-+|.  +++
T Consensus       138 ~s~ielf~~d~~~~~~~~~~~~~g--~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~--~~~  213 (355)
T 3sre_A          138 SSTVEVFKFQEEEKSLLHLKTIRH--KLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSP--NDV  213 (355)
T ss_dssp             CCEEEEEEEETTTTEEEEEEEECC--TTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEECT--TCC
T ss_pred             CCeEEEEEEECCCCEEEEEecccc--CCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEEEEC--CeE
Confidence            456777765432  1  1222221  11235788889999988777641                 234444454  333


Q ss_pred             EEEEecCCceeEEEeccCCCEEEEcccccCceeEeeccCC-Ccee-eeeeehhhhhhhccccccccceeEEEECC-CCCe
Q 021399          226 IKTYVTERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRA-GKFE-AKFFDKILQEEIGGVKGHFGPINALAFNP-DGKR  302 (313)
Q Consensus       226 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~h~~~V~~~~fsp-dgk~  302 (313)
                      ......-...|.++|+|+++.++++-... ..++.++... +... .+.|+            ..+..-.+++.+ +|+.
T Consensus       214 ~~~~~~l~~pNGia~spDg~~lYvadt~~-~~I~~~~~~~~g~l~~~~~~~------------~~g~PDGi~vD~e~G~l  280 (355)
T 3sre_A          214 RVVAEGFDFANGINISPDGKYVYIAELLA-HKIHVYEKHANWTLTPLRVLS------------FDTLVDNISVDPVTGDL  280 (355)
T ss_dssp             EEEEEEESSEEEEEECTTSSEEEEEEGGG-TEEEEEEECTTSCEEEEEEEE------------CSSEEEEEEECTTTCCE
T ss_pred             EEeecCCcccCcceECCCCCEEEEEeCCC-CeEEEEEECCCCcEecCEEEe------------CCCCCceEEEeCCCCcE
Confidence            22222234579999999999988875432 3344444321 2221 12221            134556778888 4876


Q ss_pred             e
Q 021399          303 Y  303 (313)
Q Consensus       303 ~  303 (313)
                      .
T Consensus       281 w  281 (355)
T 3sre_A          281 W  281 (355)
T ss_dssp             E
T ss_pred             E
Confidence            4

>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}

Probab=84.67  E-value=16  Score=30.23  Aligned_cols=57  Identities=16%  Similarity=0.104  Sum_probs=26.6

Q ss_pred             eEEEEECCCCceeeecccccCceeceEEEEECCCCCEEEEeeCCC------cEEEEECCCCcEEEE
Q 021399          169 IVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDK------SAKLWDARTLELIKT  228 (313)
Q Consensus       169 ~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~dg------~i~iwd~~~~~~~~~  228 (313)
                      .+.+||+.+.+ ...+.........-.++.  .++..++.|+.++      .+.++++++++.+..
T Consensus       286 ~~~~yd~~~~~-W~~~~~~p~~r~~~~~~~--~~~~i~v~GG~~~~~~~~~~v~~l~~~~~~~~~~  348 (357)
T 2uvk_A          286 STDIHLWHNGK-WDKSGELSQGRAYGVSLP--WNNSLLIIGGETAGGKAVTDSVLITVKDNKVTVQ  348 (357)
T ss_dssp             CCEEEECC----CEEEEECSSCCBSSEEEE--ETTEEEEEEEECGGGCEEEEEEEEEC-CCSCEEE
T ss_pred             eEEEEecCCCc-eeeCCCCCCCcccceeEE--eCCEEEEEeeeCCCCCEeeeEEEEEEcCcEeEee
Confidence            57789987643 121111111111112222  3677888888653      244457777666544

>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B

Probab=84.03  E-value=11  Score=36.32  Aligned_cols=38  Identities=16%  Similarity=0.065  Sum_probs=31.7

Q ss_pred             ceEEEEECCCCCeEEEeeCCCcEEEEECCCCeEEEEec
Q 021399           54 AVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFN   91 (313)
Q Consensus        54 ~V~~~~~~~~~~~l~s~s~D~~v~vWd~~~~~~~~~~~   91 (313)
                      .+.+++..++..+++|-+.|+++|+|++.+++++.+..
T Consensus       237 ~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v~t~d  274 (950)
T 4gq2_M          237 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIE  274 (950)
T ss_dssp             CEEEEEEETTTTEEEEEETTCEEEEEETTTTEEEEEEE
T ss_pred             eEEEEeecCCCcEEEEEECCCEEEEEECCCCCeEeeec
Confidence            45667777777899999999999999999999887654

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}

Probab=83.90  E-value=15  Score=29.45  Aligned_cols=65  Identities=9%  Similarity=0.141  Sum_probs=36.4

Q ss_pred             CCCEEEEeeCCC-----CeEEEeCCCCcEEE--EecCCCCceEEEEECCCCCeEEEeeCCC-----cEEEEECCCCeEE
Q 021399           21 DGDLLFSCAKDH-----TPTVWFADNGERLG--TYRGHNGAVWCCDVSRDSMTLITGSADQ-----TAKLWNVETGAQL   87 (313)
Q Consensus        21 ~g~~l~s~s~d~-----~i~iw~~~~~~~~~--~~~~H~~~V~~~~~~~~~~~l~s~s~D~-----~v~vWd~~~~~~~   87 (313)
                      +++.++.|+.++     .+.+||..+.+-..  .+......-.++.+  ++++++.||.++     .+.+||+.+.+=.
T Consensus        61 ~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~  137 (302)
T 2xn4_A           61 AGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVANMRDRRSTLGAAVL--NGLLYAVGGFDGSTGLSSVEAYNIKSNEWF  137 (302)
T ss_dssp             TTEEEEESCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEEEEECSSCEEEEEEEEETTTTEEE
T ss_pred             CCEEEEEeCcCCCccccceEEECCCCCceeeCCCCCccccceEEEEE--CCEEEEEcCCCCCccCceEEEEeCCCCeEe
Confidence            667777777543     46778877765321  11111111122222  567778787653     4778888776533

>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}

Probab=82.95  E-value=19  Score=29.96  Aligned_cols=102  Identities=11%  Similarity=0.052  Sum_probs=58.3

Q ss_pred             ccceeEEEEccCCC-EEEEeeCCCCeEEEeCCCCcEEEE---e----cCCCCceEEEEECCC----CCeEEEeeC-----
Q 021399           10 ERPLTYLKYNKDGD-LLFSCAKDHTPTVWFADNGERLGT---Y----RGHNGAVWCCDVSRD----SMTLITGSA-----   72 (313)
Q Consensus        10 ~~~v~~~~fs~~g~-~l~s~s~d~~i~iw~~~~~~~~~~---~----~~H~~~V~~~~~~~~----~~~l~s~s~-----   72 (313)
                      -.....++|.|+|+ +++ +...+.|++++. ++.....   +    ....+....++++|+    +.+.++-..     
T Consensus        17 l~~P~~i~~~pdG~~l~V-~e~~G~i~~~~~-~g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~g   94 (353)
T 2g8s_A           17 LDHPWALAFLPDNHGMLI-TLRGGELRHWQA-GKGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDG   94 (353)
T ss_dssp             ESSEEEEEECSTTCCEEE-EETTTEEEEEET-TTEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSSS
T ss_pred             CCCcEEEEEcCCCCEEEE-EeCCceEEEEeC-CCceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCCC
Confidence            34568899999998 555 556788888874 3332111   1    122345688999995    545555332     


Q ss_pred             --CCcEEEEECCCC-----eEEEEec-C------CCCeeEEEeecCCeEEEEECC
Q 021399           73 --DQTAKLWNVETG-----AQLFTFN-F------DSPARSVDFAVGDKLAVITTD  113 (313)
Q Consensus        73 --D~~v~vWd~~~~-----~~~~~~~-~------~~~~~~~~~~~~~~~~~~~~~  113 (313)
                        ...|..|++...     .....+. .      .+....+.|.+++.+.+...+
T Consensus        95 ~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~Gd  149 (353)
T 2g8s_A           95 KAGTAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKGYLFIALGE  149 (353)
T ss_dssp             CEEEEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSSSEEEEEECC
T ss_pred             CceeEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECCCCcEEEEECC
Confidence              234666666432     1111111 1      122456888888877666544

>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*

Probab=82.81  E-value=4.8  Score=31.39  Aligned_cols=98  Identities=6%  Similarity=-0.137  Sum_probs=59.4

Q ss_pred             ceEEEEEccCCCEEEEeeCCCeEEEEECCCCceeeecc-----cccCceeceEEEEECCCCCEEEEeeCCCcEEEEECCC
Q 021399          148 RINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESD-----KETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDART  222 (313)
Q Consensus       148 ~i~~~~~~~~~~~i~t~~~d~~i~lwd~~~~~~~~~~~-----~~~~h~~~v~~~~~s~~~~~l~s~s~dg~i~iwd~~~  222 (313)
                      .+..++|+|++...+.  .++.++-.+..+.....-+.     ...+.+. -.++.|.++|.+.++  .||.|.-++..+
T Consensus        42 ~~~~laf~P~G~LYaV--~~G~Ly~~~~~t~~~~~W~~s~t~IG~~Gw~~-F~a~~fD~~G~LYav--~dG~iyr~~pP~  116 (236)
T 1tl2_A           42 NFKFLFLSPGGELYGV--LNDKIYKGTPPTHDNDNWMGRAKKIGNGGWNQ-FQFLFFDPNGYLYAV--SKDKLYKASPPQ  116 (236)
T ss_dssp             TCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHCEEEECSCGGG-CSEEEECTTSCEEEE--ETTEEEEESCCC
T ss_pred             cceeEEECCCccEEEE--eCCeEEEECCCCCCcccccccccEeccccccc-ceEEEECCCCCEEEe--CCCEEEEeCCCc
Confidence            5668999999987777  67777777764422110000     0011112 478999999987777  679998887643


Q ss_pred             CcEE------EEEec--CCceeEEEeccCCCEEEEc
Q 021399          223 LELI------KTYVT--ERPVNAVTMSPLLDHVVLG  250 (313)
Q Consensus       223 ~~~~------~~~~~--~~~~~~~~~~p~~~~~~~~  250 (313)
                      ...-      ..+-.  =..+..+.+.|++..-++.
T Consensus       117 ~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~  152 (236)
T 1tl2_A          117 SDTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH  152 (236)
T ss_dssp             STTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE
T ss_pred             CCCCceeccccEeccCCCCceEEEEECCCceEEEEe
Confidence            2110      11111  1356889999998766555

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*

Probab=81.37  E-value=32  Score=31.38  Aligned_cols=203  Identities=8%  Similarity=-0.076  Sum_probs=104.7

Q ss_pred             CCCCeEEEeCCCCcEEEEec-CCCCceEEEEECCCCC-eEEEeeCCCcEEEEECCCCeEEEEecCC-CCeeEEEeec-CC
Q 021399           30 KDHTPTVWFADNGERLGTYR-GHNGAVWCCDVSRDSM-TLITGSADQTAKLWNVETGAQLFTFNFD-SPARSVDFAV-GD  105 (313)
Q Consensus        30 ~d~~i~iw~~~~~~~~~~~~-~H~~~V~~~~~~~~~~-~l~s~s~D~~v~vWd~~~~~~~~~~~~~-~~~~~~~~~~-~~  105 (313)
                      ....|+.-++++......+. ..-....+++|++.+. ++++-..++.|..+++............ ..+..+++.. ++
T Consensus        13 ~~~~I~~i~l~~~~~~~~~~~~~~~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~~~v~~~g~~~P~GlAvD~~~~   92 (628)
T 4a0p_A           13 RRADIRRISLETNNNNVAIPLTGVKEASALDFDVTDNRIYWTDISLKTISRAFMNGSALEHVVEFGLDYPEGMAVDWLGK   92 (628)
T ss_dssp             ETTEEEEEESSCTTCEEECCCCSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTT
T ss_pred             eCCcEEEEECCCCCcceEEEcCCCCceEEEEEECCCCEEEEEECCCCeEEEEECCCCCcEEEEeCCCCCcceEEEEeCCC
Confidence            45678888887654332222 1234577899998655 4555556789999998765433333322 2334455543 34


Q ss_pred             eEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEccCCCEEEEee--CCCeEEEEECCCCceeee
Q 021399          106 KLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAG--EDAIVRIWDTETGKLLKE  183 (313)
Q Consensus       106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~t~~--~d~~i~lwd~~~~~~~~~  183 (313)
                      .+.+.....       ..+....   .+.....+. ..........+++.|....|....  ..+.|...++.-.. ...
T Consensus        93 ~LY~tD~~~-------~~I~v~~---~dG~~~~~l-~~~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~-~~~  160 (628)
T 4a0p_A           93 NLYWADTGT-------NRIEVSK---LDGQHRQVL-VWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSE-RTT  160 (628)
T ss_dssp             EEEEEETTT-------TEEEEEE---TTSTTCEEE-ECSSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCS-CEE
T ss_pred             EEEEEECCC-------CEEEEEe---cCCCcEEEE-EeCCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCCc-eEE
Confidence            444432211       0000000   000111111 112233457888888544444433  35788888875432 222


Q ss_pred             cccccCceeceEEEEECCCCCEEEEee-CCCcEEEEECCCCcEEEEEe-cCCceeEEEeccCCCEEEEc
Q 021399          184 SDKETGHKKTITSLAKAADGSHFLTGS-LDKSAKLWDARTLELIKTYV-TERPVNAVTMSPLLDHVVLG  250 (313)
Q Consensus       184 ~~~~~~h~~~v~~~~~s~~~~~l~s~s-~dg~i~iwd~~~~~~~~~~~-~~~~~~~~~~~p~~~~~~~~  250 (313)
                      +.   ..-.....+++++++..|..+. ..+.|...|++.... ..+. .-.....+++..  +.++.+
T Consensus       161 l~---~~~~~P~GlalD~~~~~LY~aD~~~~~I~~~d~dG~~~-~v~~~~l~~P~glav~~--~~ly~t  223 (628)
T 4a0p_A          161 LV---PNVGRANGLTIDYAKRRLYWTDLDTNLIESSNMLGLNR-EVIADDLPHPFGLTQYQ--DYIYWT  223 (628)
T ss_dssp             EE---CSCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-EEEEECCSCEEEEEEET--TEEEEE
T ss_pred             EE---CCCCCcceEEEccccCEEEEEECCCCEEEEEcCCCCce-EEeeccCCCceEEEEEC--CEEEEe
Confidence            21   1234678899999777666554 467788889875433 2222 112234555432  455554

>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B

Probab=81.13  E-value=2.4  Score=40.89  Aligned_cols=38  Identities=26%  Similarity=0.174  Sum_probs=32.9

Q ss_pred             ceEEEEECCCCCEEEEeeCCCcEEEEECCCCcEEEEEe
Q 021399          193 TITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYV  230 (313)
Q Consensus       193 ~v~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~  230 (313)
                      .+.+++..++..++++-+.|+++|+|++.+++++.+..
T Consensus       237 ~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v~t~d  274 (950)
T 4gq2_M          237 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIE  274 (950)
T ss_dssp             CEEEEEEETTTTEEEEEETTCEEEEEETTTTEEEEEEE
T ss_pred             eEEEEeecCCCcEEEEEECCCEEEEEECCCCCeEeeec
Confidence            45667777888899999999999999999999988753

>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...

Probab=80.24  E-value=49  Score=32.78  Aligned_cols=79  Identities=15%  Similarity=-0.015  Sum_probs=47.1

Q ss_pred             CceEEEEEccC------CCEEEEeeC-CCeEEEEECCCCceeeeccccc-CceeceEEEEECCCCCEEEEeeCCCcEEEE
Q 021399          147 GRINRAVWGPL------NRTIISAGE-DAIVRIWDTETGKLLKESDKET-GHKKTITSLAKAADGSHFLTGSLDKSAKLW  218 (313)
Q Consensus       147 ~~i~~~~~~~~------~~~i~t~~~-d~~i~lwd~~~~~~~~~~~~~~-~h~~~v~~~~~s~~~~~l~s~s~dg~i~iw  218 (313)
                      ..|.++.+.|.      +++++.|.. |++++|+++..-+.+....... .-...+.-+.+ ....+|..|-.||.+.-+
T Consensus       554 ~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL~~l~~~~~~~L~~~~~p~si~l~~~-~~~~~L~igl~dG~l~~~  632 (1158)
T 3ei3_A          554 HEVACLDITPLGDSNGLSPLCAIGLWTDISARILKLPSFELLHKEMLGGEIIPRSILMTTF-ESSHYLLCALGDGALFYF  632 (1158)
T ss_dssp             SCEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEETTTCCEEEEEECCSSCCEEEEEEEEE-TTEEEEEEEETTSEEEEE
T ss_pred             CceEEEEeecCCCCcccccEEEEEECCCCEEEEEECCCCCeEEEEECCCCCCCcEEEEEEe-CCCcEEEEEeCCCeEEEE
Confidence            35666666543      368888886 9999999998755554322111 01112222333 234678899999987544


Q ss_pred             --ECCCCcEE
Q 021399          219 --DARTLELI  226 (313)
Q Consensus       219 --d~~~~~~~  226 (313)
                        |..++++.
T Consensus       633 ~~d~~tg~l~  642 (1158)
T 3ei3_A          633 GLNIETGLLS  642 (1158)
T ss_dssp             EECTTTCCEE
T ss_pred             EEcCCCCccc
Confidence              44556554

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	313
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	2e-28
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	2e-25
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	2e-20
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	2e-26
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	1e-22
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	4e-17
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	1e-19
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	6e-18
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	6e-15
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	9e-12
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	5e-06
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	5e-19
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	8e-16
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	2e-11
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	2e-07
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	8e-07
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	5e-06
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	6e-06
d1k32a3	360	b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar	1e-16
d1k32a3	360	b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar	2e-10
d1k32a3	360	b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar	3e-09
d1k32a3	360	b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar	3e-08
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	9e-15
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	5e-14
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	1e-08
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	7e-08
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	2e-07
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	9e-07
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	4e-06
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	2e-14
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	1e-13
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	6e-12
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	9e-07
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	4e-14
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	4e-09
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	5e-09
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	7e-14
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	1e-07
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	1e-05
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	2e-05
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	5e-04
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	1e-12
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	2e-12
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	2e-10
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	1e-06
d1pbyb_	337	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	1e-11
d1pbyb_	337	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	1e-09
d1pbyb_	337	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	3e-06
d1pbyb_	337	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	1e-05
d1pbyb_	337	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	6e-05
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	2e-11
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	1e-09
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	1e-09
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	9e-08
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	5e-07
d1jmxb_	346	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	8e-11
d1jmxb_	346	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	1e-06
d1jmxb_	346	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	2e-06
d1jmxb_	346	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	8e-06
d1jmxb_	346	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	8e-06
d1jmxb_	346	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	0.002
d1jmxb_	346	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	0.002
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	2e-10
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	1e-09
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	1e-09
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	7e-09
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	5e-07
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	1e-05
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	3e-09
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	7e-09
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	3e-07
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	5e-07
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	3e-04
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	4e-09
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	3e-08
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	3e-08
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	4e-08
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	0.003
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	9e-09
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	4e-08
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	2e-07
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	5e-05
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	8e-05
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	1e-04
d2bbkh_	355	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	6e-08
d2bbkh_	355	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	9e-06
d1mdah_	368	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	1e-06
d1mdah_	368	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	1e-06
d1mdah_	368	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	3e-05
d1qksa2	432	b.70.2.1 (A:136-567) C-terminal (heme d1) domain o	1e-06
d1qksa2	432	b.70.2.1 (A:136-567) C-terminal (heme d1) domain o	3e-04
d1l0qa2	301	b.69.2.3 (A:1-301) Surface layer protein {Archaeon	6e-05
d1l0qa2	301	b.69.2.3 (A:1-301) Surface layer protein {Archaeon	6e-04
d1l0qa2	301	b.69.2.3 (A:1-301) Surface layer protein {Archaeon	0.003
d1l0qa2	301	b.69.2.3 (A:1-301) Surface layer protein {Archaeon	0.004
d1hzua2	426	b.70.2.1 (A:118-543) C-terminal (heme d1) domain o	2e-04

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  109 bits (273), Expect = 2e-28
 Identities = 45/229 (19%), Positives = 90/229 (39%), Gaps = 13/229 (5%)

Query: 1   MRPILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDV 60
                M GH+  ++ +    +GD + S ++D T  +W    G  + T+ GH   V     
Sbjct: 92  ECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRP 151

Query: 61  SRDSMTLITGSADQTAKLWNVETGAQLFTFN-FDSPARSVDFAVGDKLAVITTDPFMELN 119
           ++D   + + S DQT ++W V T                + +A     + I+     E  
Sbjct: 152 NQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETK 211

Query: 120 SAIHVKRIARDPADQG---------GESVLILKGPQGRINRAVWGPLNRTIISAGEDAIV 170
            +          +            G  ++ L G    +   ++    + I+S  +D  +
Sbjct: 212 KSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTL 271

Query: 171 RIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWD 219
           R+WD +  + +K       H+  +TSL       + +TGS+D++ K+W+
Sbjct: 272 RVWDYKNKRCMKTL---NAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWE 317

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  101 bits (251), Expect = 2e-25
 Identities = 57/315 (18%), Positives = 102/315 (32%), Gaps = 42/315 (13%)

Query: 6   MKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSM 65
           + GH  P+T + ++    ++ S ++D T  VW  + G+   T +GH  +V          
Sbjct: 13  LSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGK 72

Query: 66  TLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVK 125
            L + SAD T KLW+ +    + T +      S    + +   +++              
Sbjct: 73  LLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASR----------D 122

Query: 126 RIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKE-- 183
           +  +    Q G  V    G +  +           I S   D  VR+W   T +   E  
Sbjct: 123 KTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELR 182

Query: 184 ---------------SDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKT 228
                          S           +      G   L+GS DK+ K+WD  T   + T
Sbjct: 183 EHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMT 242

Query: 229 YVT-ERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGH 287
            V  +  V  V         +L    D +              + +D   +  +  +  H
Sbjct: 243 LVGHDNWVRGVLFHS-GGKFILSCADDKT-------------LRVWDYKNKRCMKTLNAH 288

Query: 288 FGPINALAFNPDGKR 302
              + +L F+     
Sbjct: 289 EHFVTSLDFHKTAPY 303

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 87.5 bits (215), Expect = 2e-20
 Identities = 51/264 (19%), Positives = 95/264 (35%), Gaps = 22/264 (8%)

Query: 47  TYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDK 106
              GH   V           +++ S D T K+W+ ETG    T    +          D 
Sbjct: 12  ALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHT----------DS 61

Query: 107 LAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGE 166
           +  I+ D   +L ++       +    QG E +  + G    ++     P    I+SA  
Sbjct: 62  VQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASR 121

Query: 167 DAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELI 226
           D  +++W+ +TG  +      TGH++ +  +    DG+   + S D++ ++W   T E  
Sbjct: 122 DKTIKMWEVQTGYCV---KTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECK 178

Query: 227 KTYVTERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKF--------EAKFFDKILQ 278
                 R V    +S   +       +   + T    + G F          K +D    
Sbjct: 179 AELREHRHVV-ECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTG 237

Query: 279 EEIGGVKGHFGPINALAFNPDGKR 302
             +  + GH   +  + F+  GK 
Sbjct: 238 MCLMTLVGHDNWVRGVLFHSGGKF 261

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score =  104 bits (259), Expect = 2e-26
 Identities = 48/300 (16%), Positives = 95/300 (31%), Gaps = 27/300 (9%)

Query: 6   MKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSM 65
           ++GH   +  + +  D  LL S ++D    +W +    ++      +  V  C  +    
Sbjct: 51  LRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGN 110

Query: 66  TLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVK 125
            +  G  D    ++N++T       + +    +                           
Sbjct: 111 YVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYL-------SCCRFLDDNQIVTSSGD 163

Query: 126 RIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESD 185
                   + G+      G  G +      P  R  +S   DA  ++WD   G   +   
Sbjct: 164 TTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTF- 222

Query: 186 KETGHKKTITSLAKAADGSHFLTGSLDKSAKL---WDARTLELIKTYVTERPVNAVTMSP 242
             TGH+  I ++    +G+ F TGS D + +L      + L           + +V+ S 
Sbjct: 223 --TGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSK 280

Query: 243 LLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKR 302
               ++ G                 F    +D +  +  G + GH   ++ L    DG  
Sbjct: 281 SGRLLLAGYDD--------------FNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMA 326

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 94.4 bits (233), Expect = 1e-22
 Identities = 43/194 (22%), Positives = 74/194 (38%), Gaps = 15/194 (7%)

Query: 28  CAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQL 87
            + D T  +W  + G++  T+ GH G V    ++ D+   ++G+ D +AKLW+V  G   
Sbjct: 160 SSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCR 219

Query: 88  FTFN-FDSPARSVDFAV-GDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGP 145
            TF   +S   ++ F   G+  A  + D    L      + +     D            
Sbjct: 220 QTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDN----------I 269

Query: 146 QGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSH 205
              I    +    R +++  +D    +WD              GH   ++ L    DG  
Sbjct: 270 ICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVL---AGHDNRVSCLGVTDDGMA 326

Query: 206 FLTGSLDKSAKLWD 219
             TGS D   K+W+
Sbjct: 327 VATGSWDSFLKIWN 340

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 78.2 bits (191), Expect = 4e-17
 Identities = 25/80 (31%), Positives = 36/80 (45%)

Query: 1   MRPILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDV 60
           +           +T + ++K G LL +   D    VW A   +R G   GH+  V C  V
Sbjct: 261 LMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGV 320

Query: 61  SRDSMTLITGSADQTAKLWN 80
           + D M + TGS D   K+WN
Sbjct: 321 TDDGMAVATGSWDSFLKIWN 340

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 86.0 bits (211), Expect = 1e-19
 Identities = 51/233 (21%), Positives = 91/233 (39%), Gaps = 18/233 (7%)

Query: 6   MKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSM 65
           ++GHE+ +  L Y   GD L S + D T  +W    G+   T    +G         D  
Sbjct: 159 LQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGK 218

Query: 66  TLITGSADQTAKLWNVETGAQLFTFNF--------DSPARSVDFAV-GDKLAVITTDPFM 116
            +  GS D+  ++W+ ETG  +   +              SV F   G  +   + D  +
Sbjct: 219 YIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSV 278

Query: 117 ELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTE 176
           +L +  +    +       G   +   G +  +        +  I+S  +D  V  WD +
Sbjct: 279 KLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKK 338

Query: 177 TGKLLKESDKETGHKKTITSLAKA------ADGSHFLTGSLDKSAKLWDARTL 223
           +G  L       GH+ ++ S+A A       + + F TGS D  A++W  + +
Sbjct: 339 SGNPLLML---QGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKYKKI 388

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 81.4 bits (199), Expect = 6e-18
 Identities = 64/336 (19%), Positives = 116/336 (34%), Gaps = 66/336 (19%)

Query: 8   GHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRG----------------- 50
            H   +  +K++ DG+ L +   + T  V+   +G  +                      
Sbjct: 60  DHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSP 118

Query: 51  -HNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAV 109
             +  +     S D   L TG+ D+  ++W++E    +                     +
Sbjct: 119 SSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKL 178

Query: 110 ITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAI 169
           ++      +          R    + G+  L L    G    AV     + I +   D  
Sbjct: 179 VSGSGDRTV----------RIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRA 228

Query: 170 VRIWDTETGKLLKESDKE----TGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLEL 225
           VR+WD+ETG L++  D E    TGHK ++ S+    DG   ++GSLD+S KLW+ +    
Sbjct: 229 VRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANN 288

Query: 226 IKTYVT-------------ERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKF 272
                T             +  V +V  +   D  +L G +D                 F
Sbjct: 289 KSDSKTPNSGTCEVTYIGHKDFVLSVATTQ-NDEYILSGSKDRG-------------VLF 334

Query: 273 FDKILQEEIGGVKGHFGPINALA------FNPDGKR 302
           +DK     +  ++GH   + ++A        P+   
Sbjct: 335 WDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNV 370

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 72.5 bits (176), Expect = 6e-15
 Identities = 47/265 (17%), Positives = 104/265 (39%), Gaps = 22/265 (8%)

Query: 7   KGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMT 66
              +  +  + ++ DG  L + A+D    +W  +N + +   +GH   ++  D       
Sbjct: 118 PSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDK 177

Query: 67  LITGSADQTAKLWNVETGAQLFTFNFDSPARSVDF--AVGDKLAVITTDPFMELNSAIHV 124
           L++GS D+T ++W++ TG    T + +    +V      G  +A  + D  + +  +   
Sbjct: 178 LVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETG 237

Query: 125 KRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKES 184
             + R  ++          G +  +   V+    ++++S   D  V++W+ +      +S
Sbjct: 238 FLVERLDSE-----NESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDS 292

Query: 185 D---------KETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVT-ERP 234
                        GHK  + S+A   +  + L+GS D+    WD ++   +         
Sbjct: 293 KTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNS 352

Query: 235 VNAVTMSPLLD-----HVVLGGGQD 254
           V +V ++         +V   G  D
Sbjct: 353 VISVAVANGSSLGPEYNVFATGSGD 377

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 62.9 bits (151), Expect = 9e-12
 Identities = 63/317 (19%), Positives = 113/317 (35%), Gaps = 29/317 (9%)

Query: 9   HERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGE-------RLGTYRGHNGAVWCCDVS 61
           H +P+     + D   +    K  T   +   N          L     H   V C   S
Sbjct: 12  HSKPIPPFLLDLDSQSVPDALKKQTNDYYILYNPALPREIDVELHKSLDHTSVVCCVKFS 71

Query: 62  RDSMTLITGSADQTAKLWNVETGAQLFTFNFDSPA------RSVDFAVGDKLAV--ITTD 113
            D   L TG  ++T +++ V  G+ +   + DS A       +   +    L +  +   
Sbjct: 72  NDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFS 130

Query: 114 PFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIW 173
           P  +  +     R+ R    +  + V+IL+G +  I    + P    ++S   D  VRIW
Sbjct: 131 PDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIW 190

Query: 174 DTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTER 233
           D  TG+       E G      S     DG +   GSLD++ ++WD+ T  L++   +E 
Sbjct: 191 DLRTGQCSLTLSIEDGVTTVAVS---PGDGKYIAAGSLDRAVRVWDSETGFLVERLDSEN 247

Query: 234 --------PVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVK 285
                    V +V  +     VV G      +V   + +    ++               
Sbjct: 248 ESGTGHKDSVYSVVFTRDGQSVVSGS--LDRSVKLWNLQNANNKSDSKTPNSGTCEVTYI 305

Query: 286 GHFGPINALAFNPDGKR 302
           GH   + ++A   + + 
Sbjct: 306 GHKDFVLSVATTQNDEY 322

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 45.2 bits (105), Expect = 5e-06
 Identities = 17/145 (11%), Positives = 41/145 (28%), Gaps = 39/145 (26%)

Query: 160 TIISAGEDAIVRIWDTETGKLLK-ESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLW 218
             +    +    +++    + +  E  K   H   +  +  + DG +  TG  +K+ +++
Sbjct: 30  DALKKQTNDYYILYNPALPREIDVELHKSLDHTSVVCCVKFSNDGEYLATGC-NKTTQVY 88

Query: 219 DARTLELIKTYVTERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQ 278
                 L+                                  +D  A   + +  +    
Sbjct: 89  RVSDGSLVARL-------------------------------SDDSAANKDPENLNTS-- 115

Query: 279 EEIGGVKGHFGPINALAFNPDGKRY 303
                       I ++ F+PDGK  
Sbjct: 116 ----SSPSSDLYIRSVCFSPDGKFL 136

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 83.7 bits (205), Expect = 5e-19
 Identities = 55/326 (16%), Positives = 103/326 (31%), Gaps = 41/326 (12%)

Query: 3   PILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSR 62
           P ++KGH+  +        G+ + S + D+T  VW A  G+ L T  GH G VW   +  
Sbjct: 9   PKVLKGHDDHVITC-LQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRD 67

Query: 63  DSMTLITGSADQTAKLWNVETGAQLFTFN------------------FDSPARSVDFAVG 104
           + +   +                     +                   D+  R  D   G
Sbjct: 68  NIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETG 127

Query: 105 DKLAVITTDPFMELNSAIHVKRIARDPAD--------QGGESVLILKGPQGRINRAVWGP 156
             L V+              +R+     D        +    +  L+G   R+       
Sbjct: 128 QCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYS--LQF 185

Query: 157 LNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAK 216
               ++S   D  +R+WD ETG  +      TGH+   + +      +  ++G+ D + K
Sbjct: 186 DGIHVVSGSLDTSIRVWDVETGNCIH---TLTGHQSLTSGME--LKDNILVSGNADSTVK 240

Query: 217 LWDARTLELIKTYVTERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKI 276
           +WD +T + ++T        +       +   +    D   V   D + G+F        
Sbjct: 241 IWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLWDLKTGEFIRNLVTLE 300

Query: 277 LQEEIGGVKGHFGPINALAFNPDGKR 302
                    G  G +  +  +     
Sbjct: 301 S-------GGSGGVVWRIRASNTKLV 319

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 74.9 bits (182), Expect = 8e-16
 Identities = 35/201 (17%), Positives = 73/201 (36%), Gaps = 19/201 (9%)

Query: 25  LFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETG 84
           + S A D    VW  +    L T +GH   V+      D + +++GS D + ++W+VETG
Sbjct: 150 VVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSL--QFDGIHVVSGSLDTSIRVWDVETG 207

Query: 85  AQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKG 144
             + T        S      + L     D  +++      + +         +S      
Sbjct: 208 NCIHTLTGHQSLTSGMELKDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQS------ 261

Query: 145 PQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKE--SDKETGHKKTITSLAKAAD 202
                           +I++ +D  V++WD +TG+ ++   + +  G    +  +  +  
Sbjct: 262 -----AVTCLQFNKNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNT 316

Query: 203 GSHFLTGSLDKSA----KLWD 219
                 GS + +      + D
Sbjct: 317 KLVCAVGSRNGTEETKLLVLD 337

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 61.4 bits (147), Expect = 2e-11
 Identities = 55/257 (21%), Positives = 92/257 (35%), Gaps = 24/257 (9%)

Query: 1   MRPILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDV 60
               +   +    T    +     + S ++D T  VW  + G+ L    GH  AV C   
Sbjct: 86  TGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQ- 144

Query: 61  SRDSMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNS 120
             D   +++G+ D   K+W+ ET   L T    +         G  +   + D  + +  
Sbjct: 145 -YDGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQFDGIHVVSGSLDTSIRVWD 203

Query: 121 AIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKL 180
                 I      Q   S + LK                 ++S   D+ V+IWD +TG+ 
Sbjct: 204 VETGNCIHTLTGHQSLTSGMELKD--------------NILVSGNADSTVKIWDIKTGQC 249

Query: 181 LKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTER------P 234
           L+       H+  +T      + +  +T S D + KLWD +T E I+  VT         
Sbjct: 250 LQTLQGPNKHQSAVTC--LQFNKNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGV 307

Query: 235 VNAVTMSPLLDHVVLGG 251
           V  +  S       +G 
Sbjct: 308 VWRIRASNTKLVCAVGS 324

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.4 bits (116), Expect = 2e-07
 Identities = 17/71 (23%), Positives = 28/71 (39%), Gaps = 5/71 (7%)

Query: 173 WDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVT- 231
           W     K  K      GH   + +      G+  ++GS D + K+W A T + ++T V  
Sbjct: 1   WRRGELKSPKVL---KGHDDHVITCL-QFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGH 56

Query: 232 ERPVNAVTMSP 242
              V +  M  
Sbjct: 57  TGGVWSSQMRD 67

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.5 bits (111), Expect = 8e-07
 Identities = 15/71 (21%), Positives = 27/71 (38%), Gaps = 4/71 (5%)

Query: 136 GESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTIT 195
            +S  +LKG    +   +       I+S  +D  +++W   TGK L+      GH   + 
Sbjct: 6   LKSPKVLKGHDDHVITCLQ-FCGNRIVSGSDDNTLKVWSAVTGKCLRTL---VGHTGGVW 61

Query: 196 SLAKAADGSHF 206
           S     +    
Sbjct: 62  SSQMRDNIIIS 72

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.2 bits (105), Expect = 5e-06
 Identities = 16/78 (20%), Positives = 27/78 (34%), Gaps = 12/78 (15%)

Query: 22  GDLLFSCAKDHTPTVWFADNGERLGTYR-----GHNGAVWCCDVSRDSMTLITGSADQTA 76
            + + + + D T  +W    GE +         G  G VW    S   +    GS + T 
Sbjct: 270 KNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTE 329

Query: 77  KLWNVETGAQLFTFNFDS 94
           +        +L   +FD 
Sbjct: 330 E-------TKLLVLDFDV 340

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.8 bits (104), Expect = 6e-06
 Identities = 20/100 (20%), Positives = 37/100 (37%), Gaps = 7/100 (7%)

Query: 21  DGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAV-WCCDVSRDSMTLITGSADQTAKLW 79
             ++L S   D T  +W    G+ L T +G N        +  +   +IT S D T KLW
Sbjct: 226 KDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLW 285

Query: 80  NVETGAQLFTFNF------DSPARSVDFAVGDKLAVITTD 113
           +++TG  +                 +  +    +  + + 
Sbjct: 286 DLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSR 325

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 77.2 bits (188), Expect = 1e-16
 Identities = 27/235 (11%), Positives = 60/235 (25%), Gaps = 19/235 (8%)

Query: 9   HERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLI 68
            +                         V+  +  +        N   +      DS  L 
Sbjct: 136 SDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIF-AATTENSHDYAPAFDADSKNLY 194

Query: 69  TGSADQTAKLWNVETG-------AQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSA 121
             S        +           ++ F       + +    V   +     +  +     
Sbjct: 195 YLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLN---D 251

Query: 122 IHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLL 181
           ++ +    +        ++ L+      +  V G        A E  ++  +D +T K+ 
Sbjct: 252 MYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRKV- 310

Query: 182 KESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKT-YVTERPV 235
                 T  K  +T L  +AD    +    D     +     E  +T    +RP+
Sbjct: 311 ------TEVKNNLTDLRLSADRKTVMVRKDDGKIYTFPLEKPEDERTVETDKRPL 359

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 58.7 bits (140), Expect = 2e-10
 Identities = 31/311 (9%), Positives = 70/311 (22%), Gaps = 28/311 (9%)

Query: 3   PILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFAD-NGERLGTYRGHNGAVWCCDVS 61
            +L       + Y++   D  + F         +   D    +   +  + G V+   V 
Sbjct: 35  YVLKVPEPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTGKAEKFEENLGNVFAMGVD 94

Query: 62  RDSMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSA 121
           R+    +  +        ++ETG             + DF + D    I     ++    
Sbjct: 95  RNGKFAVVANDRFEIMTVDLETGKPTVIERSREAMIT-DFTISDNSRFIAYGFPLKHGET 153

Query: 122 IHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLL 181
                 A    D  G  +              +   ++ +      ++    D       
Sbjct: 154 DGYVMQAIHVYDMEGRKIFAATTENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVVLNFS 213

Query: 182 KESDKE----TGHKKTITSLAKAADGSHFLTGSLDKSAK-----LWDARTLELIKTYVTE 232
            E   +         +               G  D +         +    +       E
Sbjct: 214 FEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLE 273

Query: 233 RPVNAVTMSPL-LDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPI 291
             +   ++           G  +   +   D +  K                V      +
Sbjct: 274 SSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRK----------------VTEVKNNL 317

Query: 292 NALAFNPDGKR 302
             L  + D K 
Sbjct: 318 TDLRLSADRKT 328

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 55.3 bits (131), Expect = 3e-09
 Identities = 7/87 (8%), Positives = 20/87 (22%), Gaps = 4/87 (4%)

Query: 7   KGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMT 66
           +      +   + +         +      +     +           +    +S D  T
Sbjct: 273 ESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRKV----TEVKNNLTDLRLSADRKT 328

Query: 67  LITGSADQTAKLWNVETGAQLFTFNFD 93
           ++    D     + +E      T   D
Sbjct: 329 VMVRKDDGKIYTFPLEKPEDERTVETD 355

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 52.2 bits (123), Expect = 3e-08
 Identities = 29/287 (10%), Positives = 62/287 (21%), Gaps = 11/287 (3%)

Query: 20  KDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSAD--QTAK 77
            DGDL+   ++     +        L         +       D+               
Sbjct: 13  LDGDLIAFVSRGQA-FIQDVSGTYVLKV--PEPLRIRYVRRGGDTKVAFIHGTREGDFLG 69

Query: 78  LWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGE 137
           +++  TG             ++     +    +  +   E+ +                 
Sbjct: 70  IYDYRTGKAEKFEENLGNVFAMGVDR-NGKFAVVANDRFEIMTVDLETGKPTVIERSREA 128

Query: 138 SVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSL 197
            +            A   PL            + ++D E  K        T       + 
Sbjct: 129 MITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRK----IFAATTENSHDYAP 184

Query: 198 AKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTE-RPVNAVTMSPLLDHVVLGGGQDAS 256
           A  AD  +    S        D   L      V++   +  +  SP    +V       +
Sbjct: 185 AFDADSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEA 244

Query: 257 AVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKRY 303
                +    +      D      I  ++      +          Y
Sbjct: 245 GEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAAYY 291

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 71.4 bits (173), Expect = 9e-15
 Identities = 21/76 (27%), Positives = 34/76 (44%), Gaps = 1/76 (1%)

Query: 6   MKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSM 65
           +  HE  +  LK+   G    S  KD+    W    G  +      + +V  CD+S D  
Sbjct: 261 LHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQS-KESSSVLSCDISVDDK 319

Query: 66  TLITGSADQTAKLWNV 81
            ++TGS D+ A ++ V
Sbjct: 320 YIVTGSGDKKATVYEV 335

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 69.5 bits (168), Expect = 5e-14
 Identities = 14/66 (21%), Positives = 31/66 (46%), Gaps = 4/66 (6%)

Query: 154 WGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDK 213
           +    +  +S G+D ++  W T  G  + +    +    ++ S   + D  + +TGS DK
Sbjct: 273 FAYCGKWFVSTGKDNLLNAWRTPYGASIFQ----SKESSSVLSCDISVDDKYIVTGSGDK 328

Query: 214 SAKLWD 219
            A +++
Sbjct: 329 KATVYE 334

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.9 bits (125), Expect = 1e-08
 Identities = 18/114 (15%), Positives = 32/114 (28%), Gaps = 2/114 (1%)

Query: 1   MRPILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDV 60
            R +        +  L Y   G+ L    +     V   +  ++      H   V     
Sbjct: 215 GRQLQQHDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDK-YQLHLHESCVLSLKF 273

Query: 61  SRDSMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAV-GDKLAVITTD 113
           +      ++   D     W    GA +F     S   S D +V    +   + D
Sbjct: 274 AYCGKWFVSTGKDNLLNAWRTPYGASIFQSKESSSVLSCDISVDDKYIVTGSGD 327

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.0 bits (120), Expect = 7e-08
 Identities = 14/63 (22%), Positives = 22/63 (34%)

Query: 190 HKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTERPVNAVTMSPLLDHVVL 249
           H+  + SL  A  G  F++   D     W       I        V +  +S    ++V 
Sbjct: 264 HESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSKESSSVLSCDISVDDKYIVT 323

Query: 250 GGG 252
           G G
Sbjct: 324 GSG 326

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.4 bits (116), Expect = 2e-07
 Identities = 18/115 (15%), Positives = 34/115 (29%), Gaps = 9/115 (7%)

Query: 9   HERPLTYLKYNKDGDLLFSCA-KDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTL 67
             +P        DG +       D         +  ++ T   H   V    +S  +  +
Sbjct: 8   GSKPAYSFHVTADGQMQPVPFPPDALIGPGIPRHARQINTL-NHGEVVCAVTISNPTRHV 66

Query: 68  ITGSADQTAKLWNVETG------AQLFTFNFDSPARSVDFAVGDKLAVITTDPFM 116
            TG      K+W++         +QL   N D+  RS          ++  +   
Sbjct: 67  YTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEAST 120

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.5 bits (111), Expect = 9e-07
 Identities = 38/306 (12%), Positives = 78/306 (25%), Gaps = 33/306 (10%)

Query: 2   RPILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGE-----RLGTYRGHNGAVW 56
           R I    H   +  +  +     +++        VW   +               +  + 
Sbjct: 43  RQINTLNHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIR 101

Query: 57  CCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFM 116
            C +  D  TLI G    T  +W++            S A +         + +      
Sbjct: 102 SCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCS 161

Query: 117 ELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTE 176
           + N A+                    +G     +          + + G D  VR WD  
Sbjct: 162 DGNIAVWDLHNQTLVRQF--------QGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLR 213

Query: 177 TGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTERPVN 236
                    ++      I SL     G     G    + ++      +  + ++ E  V 
Sbjct: 214 E----GRQLQQHDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQLHLHESCVL 269

Query: 237 AVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAF 296
           ++  +      V  G          D+    +   +   I Q            + +   
Sbjct: 270 SLKFAYCGKWFVSTG---------KDNLLNAWRTPYGASIFQ------SKESSSVLSCDI 314

Query: 297 NPDGKR 302
           + D K 
Sbjct: 315 SVDDKY 320

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.6 bits (106), Expect = 4e-06
 Identities = 12/98 (12%), Positives = 32/98 (32%), Gaps = 11/98 (11%)

Query: 160 TIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWD 219
             +    DA++        + +        H + + ++  +    H  TG      K+WD
Sbjct: 24  QPVPFPPDALIGPGIPRHARQINT----LNHGEVVCAVTISNPTRHVYTGG-KGCVKVWD 78

Query: 220 ART------LELIKTYVTERPVNAVTMSPLLDHVVLGG 251
                    +  +     +  + +  + P    +++GG
Sbjct: 79  ISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGG 116

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 69.9 bits (169), Expect = 2e-14
 Identities = 52/293 (17%), Positives = 95/293 (32%), Gaps = 26/293 (8%)

Query: 7   KGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMT 66
               + +  L+Y  D   + S  +D+T  +W  +  E      GH G+V C     D   
Sbjct: 12  SETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQY--DERV 67

Query: 67  LITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKR 126
           +ITGS+D T ++W+V TG  L T      A          +   + D  + +        
Sbjct: 68  IITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTD 127

Query: 127 IARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDK 186
           I                    R    V    ++ I+SA  D  +++W+T T + ++    
Sbjct: 128 ITLRR-----------VLVGHRAAVNVVDFDDKYIVSASGDRTIKVWNTSTCEFVR---- 172

Query: 187 ETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTERPVNAVTMSPLLDH 246
            T +                ++GS D + +LWD      ++       +          +
Sbjct: 173 -TLNGHKRGIACLQYRDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFD---N 228

Query: 247 VVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPD 299
             +  G     +   D  A          +    +     H G +  L F+  
Sbjct: 229 KRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTL---VEHSGRVFRLQFDEF 278

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 68.0 bits (164), Expect = 1e-13
 Identities = 34/154 (22%), Positives = 57/154 (37%), Gaps = 7/154 (4%)

Query: 21  DGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWN 80
           D   + S + D T  VW     E + T  GH   + C         +++GS+D T +LW+
Sbjct: 147 DDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACL--QYRDRLVVSGSSDNTIRLWD 204

Query: 81  VETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVL 140
           +E GA L                  ++     D  +++     +       A  G   + 
Sbjct: 205 IECGACLRVLEGHEELVRCIRFDNKRIVSGAYDGKIKV---WDLVAALDPRAPAGTLCLR 261

Query: 141 ILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWD 174
            L    GR+ R  +      I+S+  D  + IWD
Sbjct: 262 TLVEHSGRVFRLQFDE--FQIVSSSHDDTILIWD 293

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 62.9 bits (151), Expect = 6e-12
 Identities = 32/199 (16%), Positives = 59/199 (29%), Gaps = 23/199 (11%)

Query: 28  CAKDHTPTVW-FADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQ 86
           C+KD +  VW  A   +                V  D   +++ S D+T K+WN  T   
Sbjct: 111 CSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWNTSTCEF 170

Query: 87  LFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQ 146
           + T N      +        +   ++D  + L        +      +            
Sbjct: 171 VRTLNGHKRGIACLQYRDRLVVSGSSDNTIRLWDIECGACLRVLEGHE------------ 218

Query: 147 GRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKE------TGHKKTITSLAKA 200
                      N+ I+S   D  +++WD       +             H   +  L   
Sbjct: 219 --ELVRCIRFDNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQ-- 274

Query: 201 ADGSHFLTGSLDKSAKLWD 219
            D    ++ S D +  +WD
Sbjct: 275 FDEFQIVSSSHDDTILIWD 293

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.2 bits (110), Expect = 9e-07
 Identities = 17/85 (20%), Positives = 26/85 (30%), Gaps = 11/85 (12%)

Query: 5   LMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGER---------LGTYRGHNGAV 55
           L               D   + S A D    VW                L T   H+G V
Sbjct: 211 LRVLEGHEELVRCIRFDNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRV 270

Query: 56  WCCDVSRDSMTLITGSADQTAKLWN 80
           +   +  D   +++ S D T  +W+
Sbjct: 271 FR--LQFDEFQIVSSSHDDTILIWD 293

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 69.9 bits (169), Expect = 4e-14
 Identities = 27/319 (8%), Positives = 78/319 (24%), Gaps = 60/319 (18%)

Query: 1   MRPI-LMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYR---GHNGAVW 56
           M+ + + +  +  ++ +K      LL   + D + TV+  D   +         +   + 
Sbjct: 1   MQIVQIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLL 60

Query: 57  CCDVSRDS-MTLITGSADQTAKL------------------------------------- 78
           CC+   ++ + +  G+                                            
Sbjct: 61  CCNFIDNTDLQIYVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASW 120

Query: 79  ------WNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPA 132
                  +            +  + +             +   +   +   V+       
Sbjct: 121 DGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLC 180

Query: 133 DQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLL----------- 181
           +    ++          + A+          +  D  V +   +                
Sbjct: 181 EDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRC 240

Query: 182 -KESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTERPVNAVTM 240
            + + K+T     + S+  +       T   D     W+ +T + IK +      + V +
Sbjct: 241 HRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFNEDSVVKI 300

Query: 241 SPLLDHVVLGGGQDASAVT 259
           +   + + L    D     
Sbjct: 301 ACSDNILCLATSDDTFKTN 319

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 54.5 bits (129), Expect = 4e-09
 Identities = 27/228 (11%), Positives = 63/228 (27%), Gaps = 52/228 (22%)

Query: 18  YNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGA----VWCCDVSRDSMTLITGSAD 73
            + +   L     +     +     E        +G          + ++       S D
Sbjct: 156 MDTNSSRLIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSID 215

Query: 74  QTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPAD 133
               +   +     +                                       ++  A 
Sbjct: 216 GRVAVEFFDDQGDDYN-------------------------------------SSKRFAF 238

Query: 134 QGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKT 193
           +     L        +N   + P ++ + +AG D I+  W+ +T K +K   K   ++ +
Sbjct: 239 RCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAK--FNEDS 296

Query: 194 ITSLAKAADGSHFLTGSLDKSAKLWDA--RTLELIKTYV-----TERP 234
           +  +A     +     + D + K   A  +T+EL  + +      E P
Sbjct: 297 VVKIA--CSDNILCLATSDDTFKTNAAIDQTIELNASSIYIIFDYENP 342

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 54.5 bits (129), Expect = 5e-09
 Identities = 9/76 (11%), Positives = 25/76 (32%), Gaps = 1/76 (1%)

Query: 6   MKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSM 65
                 P+  ++++     L++   D   + W     +++  +   N       ++    
Sbjct: 247 DTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFNE-DSVVKIACSDN 305

Query: 66  TLITGSADQTAKLWNV 81
            L   ++D T K    
Sbjct: 306 ILCLATSDDTFKTNAA 321

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 69.1 bits (167), Expect = 7e-14
 Identities = 51/340 (15%), Positives = 94/340 (27%), Gaps = 48/340 (14%)

Query: 12  PLTYLKYNKDGDLLFSCAKDHTPTVWFADNG--ERLGTYRGHNGAVWCCDVSRDSMTLIT 69
           P++   +NKD   +  C  +H   ++        ++   + HNG V   D + DS  ++T
Sbjct: 9   PISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVT 68

Query: 70  GSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIAR 129
              D+ A +W ++      T       R+                      +I       
Sbjct: 69  CGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQEN 128

Query: 130 DPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKE-- 187
           D            K  +  +    W P +  + +   D   RI+     ++ +       
Sbjct: 129 DWWVCKHIK----KPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPW 184

Query: 188 -------------TGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTERP 234
                        +     +  +  +A+GS     S D +  L DA     + T  +E  
Sbjct: 185 GSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLASETL 244

Query: 235 VNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFE---------------------AKFF 273
                       +V  G      + T D  AGK                        +  
Sbjct: 245 PLLAVTFITESSLVAAGHDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNL 304

Query: 274 DKILQEEIGGVKG------HFGPINALAFNPDGKRYGFLL 307
           DK    E     G      H   ++ ++    GK      
Sbjct: 305 DKKASSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQF 344

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 50.2 bits (118), Expect = 1e-07
 Identities = 33/203 (16%), Positives = 56/203 (27%), Gaps = 21/203 (10%)

Query: 27  SCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQ 86
                 TP       GE +       G V     S +   +   S D T  L + +    
Sbjct: 176 EERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMA 235

Query: 87  L-FTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGP 145
           +    +   P  +V F     L     D                D         L   G 
Sbjct: 236 VATLASETLPLLAVTFITESSLVAAGHDC--------FPVLFTYDS----AAGKLSFGGR 283

Query: 146 QGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADG-- 203
                ++    L         D       +        +  ++ HK +++ ++  + G  
Sbjct: 284 LDVPKQSSQRGLTARERFQNLDKKASSEGSAA----AGAGLDSLHKNSVSQISVLSGGKA 339

Query: 204 --SHFLTGSLDKSAKLWDARTLE 224
             S F T  +D    +WD R+LE
Sbjct: 340 KCSQFCTTGMDGGMSIWDVRSLE 362

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 44.1 bits (102), Expect = 1e-05
 Identities = 12/129 (9%), Positives = 26/129 (20%), Gaps = 50/129 (38%)

Query: 46  GTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGD 105
             +      + C   ++D   +     +    ++                          
Sbjct: 1   AYHSFLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKW------------------- 41

Query: 106 KLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAG 165
                                            V  LK   G++    W P +  I++ G
Sbjct: 42  -------------------------------VQVHELKEHNGQVTGVDWAPDSNRIVTCG 70

Query: 166 EDAIVRIWD 174
            D    +W 
Sbjct: 71  TDRNAYVWT 79

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 43.3 bits (100), Expect = 2e-05
 Identities = 8/67 (11%), Positives = 24/67 (35%), Gaps = 3/67 (4%)

Query: 188 TGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTE---RPVNAVTMSPLL 244
           +   + I+  A   D +       +    +++    + ++ +  +     V  V  +P  
Sbjct: 4   SFLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDS 63

Query: 245 DHVVLGG 251
           + +V  G
Sbjct: 64  NRIVTCG 70

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 39.1 bits (89), Expect = 5e-04
 Identities = 11/72 (15%), Positives = 17/72 (23%), Gaps = 6/72 (8%)

Query: 21  DGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDS----MTLITGSADQTA 76
                F        +   A  G  L +   H  +V    V            T   D   
Sbjct: 296 TARERFQNLDKKASSEGSAAAGAGLDS--LHKNSVSQISVLSGGKAKCSQFCTTGMDGGM 353

Query: 77  KLWNVETGAQLF 88
            +W+V +     
Sbjct: 354 SIWDVRSLESAL 365

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 65.3 bits (157), Expect = 1e-12
 Identities = 23/145 (15%), Positives = 49/145 (33%), Gaps = 12/145 (8%)

Query: 47  TYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFN-FDSPARSVDFAVGD 105
           T RGH  +V  C +  +   +ITG+ D+  ++++      L   +  D    ++ +A G 
Sbjct: 7   TLRGHMTSVITC-LQFEDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGG 65

Query: 106 KLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAG 165
            L   +TD  + +                             R    V     + I++  
Sbjct: 66  ILVSGSTDRTVRVWDIKKGCCTHVFEGHN----------STVRCLDIVEYKNIKYIVTGS 115

Query: 166 EDAIVRIWDTETGKLLKESDKETGH 190
            D  + +W       + +  +E  +
Sbjct: 116 RDNTLHVWKLPKESSVPDHGEEHDY 140

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 64.9 bits (156), Expect = 2e-12
 Identities = 47/341 (13%), Positives = 97/341 (28%), Gaps = 96/341 (28%)

Query: 6   MKGHERP-LTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDS 64
           ++GH    +T L++  + + + + A D    V+ + N + L    GH+G VW    +   
Sbjct: 8   LRGHMTSVITCLQF--EDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGG 65

Query: 65  MTL-------------------------------------------ITGSADQTAKLWNV 81
           + +                                           +TGS D T  +W +
Sbjct: 66  ILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKL 125

Query: 82  ETGAQLFTFNFDSPARSVDFAVGD-----------KLAVITTDPFMELNSAIHVKRIARD 130
              + +     +     V     +             +V T      +  +         
Sbjct: 126 PKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGSYDNTLIV 185

Query: 131 PADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETG------------ 178
                 + + IL G   RI   ++    +  ISA  D  +RIWD E G            
Sbjct: 186 WDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQGHTAL 245

Query: 179 -----------------------KLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSA 215
                                       S K + H   ++++       + L    +   
Sbjct: 246 VGLLRLSDKFLVSAAADGSIRGWDANDYSRKFSYHHTNLSAITTFYVSDNILVSGSENQF 305

Query: 216 KLWDARTLELIKTYVT--ERPVNAVTMSPLLDHVVLGGGQD 254
            +++ R+ +L+   +      + +V        +V    +D
Sbjct: 306 NIYNLRSGKLVHANILKDADQIWSVNFKG--KTLVAAVEKD 344

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 58.4 bits (139), Expect = 2e-10
 Identities = 31/202 (15%), Positives = 64/202 (31%), Gaps = 17/202 (8%)

Query: 18  YNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAK 77
            +  G+++ S + D+T  VW     + L    GH   ++      +    I+ S D T +
Sbjct: 167 VSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIR 226

Query: 78  LWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGE 137
           +W++E G  ++T    +    +       L     D  +    A    R           
Sbjct: 227 IWDLENGELMYTLQGHTALVGLLRLSDKFLVSAAADGSIRGWDANDYSRKFSYH------ 280

Query: 138 SVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSL 197
                      ++      ++  I+ +G +    I++  +GKL+            I S+
Sbjct: 281 --------HTNLSAITTFYVSDNILVSGSENQFNIYNLRSGKLVHA--NILKDADQIWSV 330

Query: 198 AKAADGSHFLTGSLDKSAKLWD 219
                         D  + L  
Sbjct: 331 NFKGKT-LVAAVEKDGQSFLEI 351

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 47.2 bits (110), Expect = 1e-06
 Identities = 7/80 (8%), Positives = 23/80 (28%), Gaps = 2/80 (2%)

Query: 1   MRPILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLG-TYRGHNGAVWCCD 59
                   H   L+ +      D +     ++   ++   +G+ +          +W  +
Sbjct: 272 DYSRKFSYHHTNLSAITTFYVSDNILVSGSENQFNIYNLRSGKLVHANILKDADQIWSVN 331

Query: 60  VSRDSMTLITGSADQTAKLW 79
               ++ +     D  + L 
Sbjct: 332 FKGKTL-VAAVEKDGQSFLE 350

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 62.1 bits (149), Expect = 1e-11
 Identities = 30/292 (10%), Positives = 62/292 (21%), Gaps = 12/292 (4%)

Query: 23  DLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDV--SRDSMTL-ITGSADQTAKLW 79
           D + + A+     V   +           +          +        T +  ++    
Sbjct: 2   DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKI 61

Query: 80  NVETGAQLFTFNFDSP------ARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPAD 133
           ++ TG  L   +  +P            +   K   I   P     +   V+       D
Sbjct: 62  DLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYD 121

Query: 134 QGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDT-ETGKLLKESDKETGHKK 192
               S         +I    W      +   G D  V   +     +       E     
Sbjct: 122 AETLSRRKAFEAPRQITMLAWARDGSKLYGLGRDLHVMDPEAGTLVEDKPIQSWEAETYA 181

Query: 193 TITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTERPVNAVTMSPLLDHVVLGGG 252
               LA           +        D    +          ++  T    +  V +   
Sbjct: 182 QPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDV 241

Query: 253 QDASAVTTTDHRAGKFEAKFFDKILQEEIGGVK--GHFGPINALAFNPDGKR 302
              S                 +    E+   +K         ++  + DG  
Sbjct: 242 FYFSTAVNPAKTRAFGAYNVLESFDLEKNASIKRVPLPHSYYSVNVSTDGST 293

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 56.0 bits (133), Expect = 1e-09
 Identities = 27/226 (11%), Positives = 51/226 (22%), Gaps = 18/226 (7%)

Query: 15  YLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQ 74
            +  +     L       T    +                +     +RD   L     D 
Sbjct: 97  AIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAPRQITMLAWARDGSKLYGLGRDL 156

Query: 75  TAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMEL--NSAIHVKRIARDPA 132
              + + E G  +      S                  +    +        K I     
Sbjct: 157 --HVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADP 214

Query: 133 DQGGESVLILKGPQGRINRAVWGPLNRTI----------ISAGEDAIVRIWDTETGKLLK 182
                 +L +    G +       ++              + G   ++  +D E    +K
Sbjct: 215 TAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAFGAYNVLESFDLEKNASIK 274

Query: 183 ESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKT 228
                     +  S+  + DGS    G        +DA TLE    
Sbjct: 275 R----VPLPHSYYSVNVSTDGSTVWLGGALGDLAAYDAETLEKKGQ 316

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 45.6 bits (106), Expect = 3e-06
 Identities = 11/93 (11%), Positives = 26/93 (27%), Gaps = 3/93 (3%)

Query: 4   ILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRD 63
             ++  +        N      F     +    +  +    +        + +  +VS D
Sbjct: 234 REVRIMDVFYFSTAVNPAKTRAFGA--YNVLESFDLEKNASIKRV-PLPHSYYSVNVSTD 290

Query: 64  SMTLITGSADQTAKLWNVETGAQLFTFNFDSPA 96
             T+  G A      ++ ET  +    +    A
Sbjct: 291 GSTVWLGGALGDLAAYDAETLEKKGQVDLPGNA 323

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 44.0 bits (102), Expect = 1e-05
 Identities = 33/279 (11%), Positives = 59/279 (21%), Gaps = 32/279 (11%)

Query: 4   ILMKGHERPLTYLKYNKDGDLLF-SCAKDHTPTVWFADNGERLGTYRGHNGAVWCCD--- 59
           I +               G + + +  K  +        GE LG                
Sbjct: 27  ITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERVKSLFG 86

Query: 60  --VSRDSMTLITGSADQTAKL------------WNVETGAQLFTFNFDSPARSVDFAVGD 105
             +S D  TL    +    +L            ++ ET ++   F        + +A   
Sbjct: 87  AALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAPRQITMLAWARDG 146

Query: 106 KLAVIT----------TDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWG 155
                               +E       +       D                      
Sbjct: 147 SKLYGLGRDLHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTAR 206

Query: 156 PLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSA 215
                         +   D ETG++     +        T    A + +           
Sbjct: 207 KDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFST----AVNPAKTRAFGAYNVL 262

Query: 216 KLWDARTLELIKTYVTERPVNAVTMSPLLDHVVLGGGQD 254
           + +D      IK         +V +S     V LGG   
Sbjct: 263 ESFDLEKNASIKRVPLPHSYYSVNVSTDGSTVWLGGALG 301

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 41.7 bits (96), Expect = 6e-05
 Identities = 20/198 (10%), Positives = 40/198 (20%), Gaps = 14/198 (7%)

Query: 1   MRPILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDV 60
              +   G +  +   +     +     + +                      A      
Sbjct: 146 GSKLYGLGRDLHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTA 205

Query: 61  SRDSMTLITGSADQTAKLWNVETGAQLFT-FNFDSPARSVDFAVGDKLAVITTDPFMELN 119
            +D       +        ++ETG                      K         +E  
Sbjct: 206 RKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAFGAYNVLESF 265

Query: 120 SAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGK 179
                  I R P      SV                    T+   G    +  +D ET +
Sbjct: 266 DLEKNASIKRVPLPHSYYSV-------------NVSTDGSTVWLGGALGDLAAYDAETLE 312

Query: 180 LLKESDKETGHKKTITSL 197
              + D       ++ S+
Sbjct: 313 KKGQVDLPGNASMSLASV 330

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 61.5 bits (147), Expect = 2e-11
 Identities = 14/49 (28%), Positives = 19/49 (38%)

Query: 42 GERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTF 90
          G       GHN A+     S D  TL +  A+     W++ TG     F
Sbjct: 2  GSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVF 50

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 55.8 bits (132), Expect = 1e-09
 Identities = 37/286 (12%), Positives = 74/286 (25%), Gaps = 37/286 (12%)

Query: 6   MKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYR-GHNGAVWCCDVSRDS 64
             GH + +T L  + DG  LFS   +     W    G     +   H   +     +   
Sbjct: 8   RYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKG 67

Query: 65  MTLITGSADQTAKLWNVETGAQLFTFNF---DSPARSVDFAVGDKLAVITTD-------- 113
                   D    +    +G            S    +  +    +AV            
Sbjct: 68  DLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSH 127

Query: 114 -------------------PFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVW 154
                                  +       ++          S +        I    +
Sbjct: 128 GKLTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAF 187

Query: 155 GPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKS 214
                 +++  +   V  +       L  ++  T H   +  ++ + D     TGSLD S
Sbjct: 188 SNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNS 247

Query: 215 AKLWDARTLELIKTYV----TERPVNAVTMSPLLDHVVLGGGQDAS 256
             +W+          +        VN+V      +  ++  GQD++
Sbjct: 248 VIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLN--ETTIVSAGQDSN 291

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 55.8 bits (132), Expect = 1e-09
 Identities = 11/66 (16%), Positives = 24/66 (36%), Gaps = 1/66 (1%)

Query: 154 WGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDK 213
           W P N  + +   D  V +W+           K      ++ S+    + +  ++   D 
Sbjct: 232 WSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVI-WLNETTIVSAGQDS 290

Query: 214 SAKLWD 219
           + K W+
Sbjct: 291 NIKFWN 296

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 50.4 bits (118), Expect = 9e-08
 Identities = 12/58 (20%), Positives = 19/58 (32%), Gaps = 2/58 (3%)

Query: 141 ILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLA 198
           +  G    I         +T+ SA  +  +  WD  TG   +       H   IT + 
Sbjct: 7   VRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVF--PDVHATMITGIK 62

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 48.1 bits (112), Expect = 5e-07
 Identities = 10/58 (17%), Positives = 22/58 (37%), Gaps = 2/58 (3%)

Query: 26  FSCAKDHTPTVWFADNGE--RLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNV 81
            + + D++  VW  +      +     H  +     +  +  T+++   D   K WNV
Sbjct: 240 ATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNETTIVSAGQDSNIKFWNV 297

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

 Score = 59.8 bits (143), Expect = 8e-11
 Identities = 29/250 (11%), Positives = 58/250 (23%), Gaps = 32/250 (12%)

Query: 6   MKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGER----LGTYRGHNGAVWCCDVS 61
                R +     + DG  +++                       T  G           
Sbjct: 84  PGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPM 143

Query: 62  RDSMTLITGSADQTA-------KLWNVETGAQLFTFNFDSPARSVDFAVGDKLA------ 108
              + L+  + D +           +V+TG         +  R    A            
Sbjct: 144 PRQVYLMRAADDGSLYVAGPDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSP 203

Query: 109 ----------VITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLN 158
                         D   +  +A  +          G                 +  P +
Sbjct: 204 RHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKD 263

Query: 159 RTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLW 218
              I    +  +  +D +  KL+K ++       T   +A    G     G       ++
Sbjct: 264 PNQIYGVLNR-LAKYDLKQRKLIKAAN----LDHTYYCVAFDKKGDKLYLGGTFNDLAVF 318

Query: 219 DARTLELIKT 228
           +  TLE +K 
Sbjct: 319 NPDTLEKVKN 328

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

 Score = 47.0 bits (110), Expect = 1e-06
 Identities = 6/99 (6%), Positives = 19/99 (19%), Gaps = 2/99 (2%)

Query: 1   MRPILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDV 60
                             +            +    +     + +      +   +C   
Sbjct: 242 THTQEFADLTELYFTGLRSPKDPNQIYGV-LNRLAKYDLKQRKLIKAA-NLDHTYYCVAF 299

Query: 61  SRDSMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSV 99
            +    L  G       ++N +T  ++          S 
Sbjct: 300 DKKGDKLYLGGTFNDLAVFNPDTLEKVKNIKLPGGDMST 338

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

 Score = 46.3 bits (108), Expect = 2e-06
 Identities = 20/156 (12%), Positives = 39/156 (25%), Gaps = 10/156 (6%)

Query: 158 NRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSH-FLTGSLDKSAK 216
           +  +I       + + D  +  + K        K    +   A D    ++  +      
Sbjct: 8   HEYMIVTNYPNNLHVVDVASDTVYKSCV--MPDKFGPGTAMMAPDNRTAYVLNNHYGDIY 65

Query: 217 LWDARTLELIKTYVTERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEA-----K 271
             D  T +             V  S     +   G +  + V  T      +       +
Sbjct: 66  GIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLE 125

Query: 272 FFDKILQEEIGGVKGHFGP--INALAFNPDGKRYGF 305
            F      E   V+    P  +  +    DG  Y  
Sbjct: 126 VFSTADGLEAKPVRTFPMPRQVYLMRAADDGSLYVA 161

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

 Score = 44.7 bits (104), Expect = 8e-06
 Identities = 27/283 (9%), Positives = 62/283 (21%), Gaps = 37/283 (13%)

Query: 2   RPILMKGHERPLTYLKYNKDGDLLF-SCAKDHTPTVWFADNGERL------GTYRGHNGA 54
           +  +M     P        D    +              D  +                +
Sbjct: 32  KSCVMPDKFGP-GTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSSVPGEVGRS 90

Query: 55  VWCCDVSRDSMTLITGSADQTAKLWNVETG---------------AQLFTFNFDSPARSV 99
           ++   +S D   +            +                     + TF        +
Sbjct: 91  MYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLM 150

Query: 100 DFAVGDKLA-------VITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRA 152
             A    L         +         +        +  +          + P+   +  
Sbjct: 151 RAADDGSLYVAGPDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSML 210

Query: 153 VW----GPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLT 208
                     +   +A         D +TGK   +        +   +  ++    + + 
Sbjct: 211 YTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEF--ADLTELYFTGLRSPKDPNQIY 268

Query: 209 GSLDKSAKLWDARTLELIKTYVTERPVNAVTMSPLLDHVVLGG 251
           G L+     +D +  +LIK    +     V      D + LGG
Sbjct: 269 GVLN-RLAKYDLKQRKLIKAANLDHTYYCVAFDKKGDKLYLGG 310

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

 Score = 44.3 bits (103), Expect = 8e-06
 Identities = 26/313 (8%), Positives = 67/313 (21%), Gaps = 45/313 (14%)

Query: 21  DGDLLFSCAKDHTPTVWFADNGERLGTYR-GHNGAVWCCDVSRDSMTL-ITGSADQTAKL 78
             + +      +   V    +     +             ++ D+ T  +  +       
Sbjct: 7   GHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYG 66

Query: 79  WNVETGAQLFTFNF--------DSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIAR- 129
            +++T    F  N          S         G ++           +  +        
Sbjct: 67  IDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEV 126

Query: 130 -DPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWD-------------- 174
              AD      +       ++            ++  +   + +                
Sbjct: 127 FSTADGLEAKPVRTFPMPRQVYLMRAADDGSLYVAGPDIYKMDVKTGKYTVALPLRNWNR 186

Query: 175 ----TETGKLLKESDKETGHKKTITSLAKAADGSHFL-TGSLDKSAKLWDARTLELIKTY 229
                                  + ++A+  D      T  L       D +T +     
Sbjct: 187 KGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQ- 245

Query: 230 VTERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFG 289
                         L    L   +D + +    +R  K++ K    I    +        
Sbjct: 246 -------EFADLTELYFTGLRSPKDPNQIYGVLNRLAKYDLKQRKLIKAANLD------H 292

Query: 290 PINALAFNPDGKR 302
               +AF+  G +
Sbjct: 293 TYYCVAFDKKGDK 305

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

 Score = 37.4 bits (85), Expect = 0.002
 Identities = 12/194 (6%), Positives = 36/194 (18%), Gaps = 16/194 (8%)

Query: 60  VSRDSMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAV---GDKLAVITTDPFM 116
           +      +I  +      + +V +     +             +        V+      
Sbjct: 4   LKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNH--- 60

Query: 117 ELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTE 176
                I+   +             +       +      P  + + +             
Sbjct: 61  --YGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYV 118

Query: 177 TG-KLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSA-------KLWDARTLELIKT 228
                L+      G +             + +  + D S           D +T +    
Sbjct: 119 VKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGSLYVAGPDIYKMDVKTGKYTVA 178

Query: 229 YVTERPVNAVTMSP 242
                       +P
Sbjct: 179 LPLRNWNRKGYSAP 192

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

 Score = 37.4 bits (85), Expect = 0.002
 Identities = 14/108 (12%), Positives = 29/108 (26%), Gaps = 9/108 (8%)

Query: 197 LAKAADGSHFLTGSLDKSAKLWDARTLELIKTYV--TERPVNAVTMSPLLDHVVLGGGQD 254
            A  A   + +  +   +  + D  +  + K+ V   +       M+P      +     
Sbjct: 2   PALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHY 61

Query: 255 ASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKR 302
              +   D    K                       + + A +PDGK 
Sbjct: 62  GD-IYGIDLDTCKNTFHA------NLSSVPGEVGRSMYSFAISPDGKE 102

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 58.4 bits (139), Expect = 2e-10
 Identities = 14/75 (18%), Positives = 25/75 (33%), Gaps = 2/75 (2%)

Query: 145 PQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGS 204
             G +    W P    I SA  D  ++IW+  T K+ K     T  +     +       
Sbjct: 237 HSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIW--TKQ 294

Query: 205 HFLTGSLDKSAKLWD 219
             ++ S +      +
Sbjct: 295 ALVSISANGFINFVN 309

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 56.1 bits (133), Expect = 1e-09
 Identities = 12/67 (17%), Positives = 22/67 (32%), Gaps = 1/67 (1%)

Query: 17  KYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNG-AVWCCDVSRDSMTLITGSADQT 75
            ++ DG  + S + D T  +W     +   T             +      L++ SA+  
Sbjct: 245 TWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGF 304

Query: 76  AKLWNVE 82
               N E
Sbjct: 305 INFVNPE 311

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 55.7 bits (132), Expect = 1e-09
 Identities = 9/80 (11%), Positives = 18/80 (22%), Gaps = 1/80 (1%)

Query: 14 TYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSAD 73
            L     GD +  C    +       +      Y  H+        S       +G   
Sbjct: 21 VVLGNTPAGDKIQYCN-GTSVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYCASGDVH 79

Query: 74 QTAKLWNVETGAQLFTFNFD 93
             ++W+      +      
Sbjct: 80 GNVRIWDTTQTTHILKTTIP 99

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 53.8 bits (127), Expect = 7e-09
 Identities = 32/256 (12%), Positives = 67/256 (26%), Gaps = 15/256 (5%)

Query: 5   LMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERL--GTYRGHNGAVWCCDVSR 62
           +   H    T  K +  G    S        +W       +   T    +G V       
Sbjct: 53  IYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDS 112

Query: 63  DSMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAI 122
           +S  +      +                N    AR+++        V           + 
Sbjct: 113 ESKRIAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMNS-------VDFKPSRPFRIISG 165

Query: 123 HVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLK 182
                         +           ++   + P      S G D  + +++   G    
Sbjct: 166 SDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTG 225

Query: 183 ESDKETGHKKTITSL----AKAADGSHFLTGSLDKSAKLWDARTLELIKTYV--TERPVN 236
             + ++      +        + DG+   + S DK+ K+W+  TL++ KT    T     
Sbjct: 226 VFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQ 285

Query: 237 AVTMSPLLDHVVLGGG 252
            + +      +V    
Sbjct: 286 QLGIIWTKQALVSISA 301

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 48.0 bits (112), Expect = 5e-07
 Identities = 17/66 (25%), Positives = 28/66 (42%), Gaps = 3/66 (4%)

Query: 51  HNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAV---GDKL 107
           H+G+V+    S D   + + SAD+T K+WNV T     T    +        +      L
Sbjct: 237 HSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQAL 296

Query: 108 AVITTD 113
             I+ +
Sbjct: 297 VSISAN 302

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 43.7 bits (101), Expect = 1e-05
 Identities = 9/73 (12%), Positives = 21/73 (28%), Gaps = 4/73 (5%)

Query: 146 QGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSH 205
           +G        P    I      ++       +    +     T H    T    +  G +
Sbjct: 17  RGTAVVLGNTPAGDKIQYCNGTSVY-TVPVGSLTDTEIY---TEHSHQTTVAKTSPSGYY 72

Query: 206 FLTGSLDKSAKLW 218
             +G +  + ++W
Sbjct: 73  CASGDVHGNVRIW 85

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 55.0 bits (130), Expect = 3e-09
 Identities = 14/64 (21%), Positives = 24/64 (37%), Gaps = 2/64 (3%)

Query: 19  NKDGDLLFSCAKDHTPTVW-FADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAK 77
             + DL+ + + D    ++      + +     H   V        S TL++  AD   K
Sbjct: 224 EIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETPS-TLVSSGADACIK 282

Query: 78  LWNV 81
            WNV
Sbjct: 283 RWNV 286

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 53.8 bits (127), Expect = 7e-09
 Identities = 33/280 (11%), Positives = 79/280 (28%), Gaps = 29/280 (10%)

Query: 41  NGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVD 100
           + E L T  GHN  +    V+     LI+GS D     W+  +  Q  +    +   S+D
Sbjct: 2   HDEVLKTISGHNKGITALTVN----PLISGSYDGRIMEWSSSSMHQDHS----NLIVSLD 53

Query: 101 FAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRT 160
            +   + + I+ D  +++N     +  ++                       +       
Sbjct: 54  NSKAQEYSSISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDI 113

Query: 161 IISAGEDAIVRIWDTETGKLLKESDKETGHKK------------------TITSLAKAAD 202
           I S   ++           +    ++    +                     + ++ +  
Sbjct: 114 IKSVRLNSPGSAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPS 173

Query: 203 GSHFLTGSLDKSAKLWDARTLELIKTYVTERPVNAVTMSPLLDHVVLGGGQDASAVTTTD 262
            ++   G +     L+D ++ E+  +    R      +S           +    +  T 
Sbjct: 174 ETYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATG 233

Query: 263 HRAGKFEAKFFD-KILQEEIGGVKGHFGPINALAFNPDGK 301
                     +  K   + I  +  H   +N L +     
Sbjct: 234 SLDTN--IFIYSVKRPMKIIKALNAHKDGVNNLLWETPST 271

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 48.8 bits (114), Expect = 3e-07
 Identities = 9/68 (13%), Positives = 19/68 (27%), Gaps = 3/68 (4%)

Query: 152 AVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSL 211
                    + +   D  + I+  +     K       HK  + +L         ++   
Sbjct: 221 NEEEIEEDLVATGSLDTNIFIYSVKRPM--KIIKALNAHKDGVNNLLWETPS-TLVSSGA 277

Query: 212 DKSAKLWD 219
           D   K W+
Sbjct: 278 DACIKRWN 285

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 48.0 bits (112), Expect = 5e-07
 Identities = 29/283 (10%), Positives = 72/283 (25%), Gaps = 43/283 (15%)

Query: 6   MKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSM 65
           + GH + +T L  N     L S + D     W + +       + H+  +   D S+   
Sbjct: 9   ISGHNKGITALTVNP----LISGSYDGRIMEWSSSSMH-----QDHSNLIVSLDNSKAQE 59

Query: 66  TLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVG-DKLAVITTDPFMELNSAIHV 124
                  D        +           +        +  D   +I      ++  ++ +
Sbjct: 60  YSSISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRL 119

Query: 125 KRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVR------------- 171
                  +       + L+         +        +     A                
Sbjct: 120 NSPGSAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAA 179

Query: 172 ----------------IWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSA 215
                           +  +       + +  +       +  +  +     TGSLD + 
Sbjct: 180 GDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNI 239

Query: 216 KLWDART-LELIKTYVT-ERPVNAVTMSPLLDHVVLGGGQDAS 256
            ++  +  +++IK     +  VN +         ++  G DA 
Sbjct: 240 FIYSVKRPMKIIKALNAHKDGVNNLLWET--PSTLVSSGADAC 280

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 39.6 bits (90), Expect = 3e-04
 Identities = 14/127 (11%), Positives = 32/127 (25%), Gaps = 52/127 (40%)

Query: 48  YRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKL 107
                      +   +   + TGS D    +++V+   ++                    
Sbjct: 211 ISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIK------------------ 252

Query: 108 AVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGED 167
                                             L   +  +N  +W     T++S+G D
Sbjct: 253 ---------------------------------ALNAHKDGVNNLLWET-PSTLVSSGAD 278

Query: 168 AIVRIWD 174
           A ++ W+
Sbjct: 279 ACIKRWN 285

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 54.9 bits (130), Expect = 4e-09
 Identities = 14/188 (7%), Positives = 38/188 (20%), Gaps = 53/188 (28%)

Query: 47  TYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDK 106
             + H+  ++           ++ S D   K+W+ +        +               
Sbjct: 9   AGKAHDADIFSVSACNS--FTVSCSGDGYLKVWDNKLLDNENPKDK-------------- 52

Query: 107 LAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGE 166
                       +  +H   +      Q  E                       + +   
Sbjct: 53  ----------SYSHFVHKSGLHHVDVLQAIER---------------DAFELCLVATTSF 87

Query: 167 DAIVRIWDTETGKLLKESDKETG-------HKKTITSLAKAADGSH-----FLTGSLDKS 214
              +  +        K+   E          K +  +L   A          +   +  +
Sbjct: 88  SGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGT 147

Query: 215 AKLWDART 222
             +W    
Sbjct: 148 TYIWKFHP 155

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 52.2 bits (123), Expect = 3e-08
 Identities = 36/290 (12%), Positives = 73/290 (25%), Gaps = 58/290 (20%)

Query: 17  KYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSM----------- 65
           +   +  L+ + +       +     +           +   D+ + S            
Sbjct: 74  RDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDR 133

Query: 66  ----TLITGSADQTAKLWNVETGAQ-------------------LFTFNFDSPARSVDFA 102
                L+      T  +W     A                             A SVD +
Sbjct: 134 LLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDIS 193

Query: 103 VGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTII 162
               +A    +        + +  ++        ES   +      I    + P    + 
Sbjct: 194 ERGLIATGFNNGT------VQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLA 247

Query: 163 SAGEDAIV---RIWDTETGKLLKESDKETG----------HKKTITSLAKAADGSHFLTG 209
            A +        +++TE G+ +      T           H   + SL+    G    + 
Sbjct: 248 IAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSA 307

Query: 210 SLDKSAKLWDARTLELIKTYVT-----ERPVNAVTMSPLLDHVVLGGGQD 254
             D   + WD +T E I T        E   + + +    D +   G  D
Sbjct: 308 GWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFD 357

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 52.2 bits (123), Expect = 3e-08
 Identities = 40/342 (11%), Positives = 83/342 (24%), Gaps = 49/342 (14%)

Query: 7   KGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGE------RLGTYRGHNGAVWCCDV 60
           K H+  +  +          SC+ D    VW     +      +  ++  H   +   DV
Sbjct: 11  KAHDADIFSVSA--CNSFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDV 68

Query: 61  SR-------DSMTLITGSADQTAKLWNVETGAQLFTFNFDSP-----------------A 96
            +       +   + T S       + +    +     F+                    
Sbjct: 69  LQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWG 128

Query: 97  RSVDFAVGDKLAVITTD------PFMELNSAIHVKRIARDPADQGGESVLILKGPQGRIN 150
            S D  +  +L             F       +   +   P  +   +V     P     
Sbjct: 129 ASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFAT 188

Query: 151 RAVWGPLNRTIISAGEDAIVRI---WDTETGKLLKESDKETGHKKTITSLAKAADGSHFL 207
                     I +   +  V+I            +       +  +I S+  +  GS   
Sbjct: 189 SVDISE-RGLIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLA 247

Query: 208 TGSLDKSAKLWDARTLELIKTYVTERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGK 267
                 S         E  +   +       + + L +          S   + +     
Sbjct: 248 IAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSA 307

Query: 268 FE---AKFFDKILQEEIGGVKGHFGPI----NALAFNPDGKR 302
                 +F+D   +E I  +  H   I    + LA +  G  
Sbjct: 308 GWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDS 349

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 51.8 bits (122), Expect = 4e-08
 Identities = 24/193 (12%), Positives = 51/193 (26%), Gaps = 20/193 (10%)

Query: 45  LGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVG 104
           + +    +      D+S   + + TG  + T ++  + T   L+ F       +   ++ 
Sbjct: 177 VESPMTPSQFATSVDISERGL-IATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIR 235

Query: 105 DKLAVIT------------TDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRA 152
                                      +    +  +        ++ L        +   
Sbjct: 236 SVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSL 295

Query: 153 VWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTI----TSLAKAADGSHFLT 208
            +     T+ SAG D  +R WD +T + +        H   I      LA    G     
Sbjct: 296 SFNDSGETLCSAGWDGKLRFWDVKTKERIT---TLNMHCDDIEIEEDILAVDEHGDSLAE 352

Query: 209 GSLDKSAKLWDAR 221
             +     L    
Sbjct: 353 PGVFDVKFLKKGW 365

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 36.8 bits (83), Expect = 0.003
 Identities = 16/87 (18%), Positives = 22/87 (25%), Gaps = 4/87 (4%)

Query: 9   HERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAV----WCCDVSRDS 64
           H   +  L +N  G+ L S   D     W     ER+ T   H   +        V    
Sbjct: 288 HSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHG 347

Query: 65  MTLITGSADQTAKLWNVETGAQLFTFN 91
            +L          L            N
Sbjct: 348 DSLAEPGVFDVKFLKKGWRSGMGADLN 374

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 53.4 bits (126), Expect = 9e-09
 Identities = 12/67 (17%), Positives = 27/67 (40%)

Query: 153 VWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLD 212
           +    ++   + G DA +R+WD  T K +++   +            A      ++ SLD
Sbjct: 258 LSWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLD 317

Query: 213 KSAKLWD 219
            +   ++
Sbjct: 318 GTLNFYE 324

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 51.5 bits (121), Expect = 4e-08
 Identities = 10/67 (14%), Positives = 20/67 (29%), Gaps = 3/67 (4%)

Query: 18  YNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVS---RDSMTLITGSADQ 74
              D     +   D T  VW     + +  +      +    V      +  +I+ S D 
Sbjct: 259 SWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDG 318

Query: 75  TAKLWNV 81
           T   + +
Sbjct: 319 TLNFYEL 325

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 49.5 bits (116), Expect = 2e-07
 Identities = 32/261 (12%), Positives = 73/261 (27%), Gaps = 20/261 (7%)

Query: 9   HERPLTYLKY--NKDGDLLFSCAKDHTPTVWFADNGER--------LGTYRGHNGAVWCC 58
               +T +K+   K    L S  +     VW     +            ++   G +   
Sbjct: 62  GSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDI 121

Query: 59  DVSRDSMTLITGSA--DQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFM 116
               +   L       D      + ++G  L   +  S   +       +     T    
Sbjct: 122 SWDFEGRRLCVVGEGRDNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDD 181

Query: 117 ELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTE 176
                          +D+        K      +          +I+ G D  +  +D +
Sbjct: 182 GSVVFYQGPPFKFSASDRTHH-----KQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGK 236

Query: 177 TGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTER--- 233
           +G+ LK  + +    +         D   F T   D + ++WD  T + ++ +  ++   
Sbjct: 237 SGEFLKYIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQL 296

Query: 234 PVNAVTMSPLLDHVVLGGGQD 254
               V +    +  ++    D
Sbjct: 297 GNQQVGVVATGNGRIISLSLD 317

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 42.2 bits (97), Expect = 5e-05
 Identities = 17/119 (14%), Positives = 37/119 (31%), Gaps = 9/119 (7%)

Query: 190 HKKTITSLAKAADGSHFLTGSLDKSA-KLWD--ARTLELIKTYVTER--PVNAVTMSPLL 244
            +   T L+     +         +  +  D     +  +  +       V  V  SP+ 
Sbjct: 16  QRNFTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIK 75

Query: 245 DHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKRY 303
               L  G ++  V        K        +  E     +   GPI+ ++++ +G+R 
Sbjct: 76  GSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEF----QVLAGPISDISWDFEGRRL 130

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 41.4 bits (95), Expect = 8e-05
 Identities = 11/80 (13%), Positives = 21/80 (26%), Gaps = 3/80 (3%)

Query: 146 QGRINRAVWGPLNRTIISA-GEDAIVRIWDTETGKLLKESDKETGHKKTITSLA--KAAD 202
           +       + P    I    G+ A VR  D    K+             +T++       
Sbjct: 17  RNFTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKG 76

Query: 203 GSHFLTGSLDKSAKLWDART 222
             +  +G       +W    
Sbjct: 77  SQYLCSGDESGKVIVWGWTF 96

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 40.7 bits (93), Expect = 1e-04
 Identities = 13/98 (13%), Positives = 25/98 (25%), Gaps = 4/98 (4%)

Query: 6   MKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDV----S 61
                  +  ++++ D                F         Y   +       +     
Sbjct: 201 HHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSW 260

Query: 62  RDSMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSV 99
            DS    T  AD T ++W+V T   +  +  D      
Sbjct: 261 LDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGN 298

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 50.9 bits (120), Expect = 6e-08
 Identities = 30/298 (10%), Positives = 66/298 (22%), Gaps = 23/298 (7%)

Query: 27  SCAKDHTPTVWFADNGERLGTYRGH--NGAVWCCD------VSRDSMTLITGSADQTAKL 78
             A      V   + G  +G   G      V   D       S     +  G      ++
Sbjct: 23  HFAAVTQQFVIDGEAGRVIGMIDGGFLPNPVVADDGSFIAHASTVFSRIARGERTDYVEV 82

Query: 79  WNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKR--IARDPADQGG 136
           ++  T             R   F VG    + +  P  +                  +G 
Sbjct: 83  FDPVTLLPTADIELPDAPR---FLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGK 139

Query: 137 ESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITS 196
               +L  P                   G  A V      T ++          +  I  
Sbjct: 140 AFKRMLDVPDCYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINH 199

Query: 197 LAKAADGSHFLTGSLDKSAKLWD--ARTLELIKTYVTERPVNAVTMSPLLDHVVLGGGQD 254
            A +      +  +        D  +   + +                      +   + 
Sbjct: 200 PAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRA 259

Query: 255 ASAVTTTDHRAGKFEAKFFDKILQ-------EEIGGVKGHFGPINALAFNPDGKRYGF 305
              +     +  ++  K   + +        E +   +     I+++  + D K   +
Sbjct: 260 LDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMG-HEIDSINVSQDEKPLLY 316

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 44.4 bits (103), Expect = 9e-06
 Identities = 27/309 (8%), Positives = 67/309 (21%), Gaps = 45/309 (14%)

Query: 19  NKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGA-------VWCCDVSRDSMTLITGS 71
           +     +    +     V+              +          W   ++ D  TL+   
Sbjct: 65  STVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQ 124

Query: 72  ADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDP 131
                 +  V+   + F    D P     F        +          A   +      
Sbjct: 125 FSPAPAVGVVDLEGKAFKRMLDVPDCYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEIT 184

Query: 132 ADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHK 191
             +           +  IN   +      ++       +   D  +G   K         
Sbjct: 185 HTEVFHP-----EDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDA-KFLPAVEALT 238

Query: 192 KTITSLAKAADGSHFLTGSLD--------------------KSAKLWDARTLELIKTYVT 231
           +   +      G   +                         +   + DA+T E +  +  
Sbjct: 239 EAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEM 298

Query: 232 ERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPI 291
              ++++ +S     ++         +   D  +G+            E+  V       
Sbjct: 299 GHEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGE------------ELRSVNQLGHGP 346

Query: 292 NALAFNPDG 300
             +     G
Sbjct: 347 QVITTADMG 355

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 368

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 47.3 bits (111), Expect = 1e-06
 Identities = 16/236 (6%), Positives = 50/236 (21%), Gaps = 24/236 (10%)

Query: 24  LLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCD-------VSRDSMTLITGSADQTA 76
           LLF                      +  +               S  +    +  A   A
Sbjct: 138 LLFFLFGSSAAAGLSVPGASDDQLTKSASCFHIHPGAAATHYLGSCPASLAASDLAAAPA 197

Query: 77  KLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGG 136
               V       T   +  +++        L        ++ +       +         
Sbjct: 198 AAGIVGAQC---TGAQNCSSQAAQANYPGMLVWAVASSILQGDIPAAGATMKAAIDGNES 254

Query: 137 ESVLILKGPQGRI--------NRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKET 188
                     G          +  +   +  +                 G+         
Sbjct: 255 GRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGP----I 310

Query: 189 GHKKTITSLAKAADGSHFL--TGSLDKSAKLWDARTLELIKTYVTERPVNAVTMSP 242
            +     ++  A DG+       +  +   ++DA + +   +   ++   ++++  
Sbjct: 311 SNGHDSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQSSVELDKGPESLSVQN 366

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 368

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 46.9 bits (110), Expect = 1e-06
 Identities = 20/280 (7%), Positives = 53/280 (18%), Gaps = 25/280 (8%)

Query: 14  TYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTL------ 67
            +   +          +     V+       +      +   +        +        
Sbjct: 78  DFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSAC 137

Query: 68  --ITGSADQTAKLWNVETGAQLFTFNF--------DSPARSVDFAVGDKLAVITTDPFME 117
                     A   +V   +                + A     +    LA         
Sbjct: 138 LLFFLFGSSAAAGLSVPGASDDQLTKSASCFHIHPGAAATHYLGSCPASLAASDLAA--- 194

Query: 118 LNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTET 177
              A      A+    Q   S        G +  AV   + +  I A    +    D   
Sbjct: 195 -APAAAGIVGAQCTGAQNCSSQAAQANYPGMLVWAVASSILQGDIPAAGATMKAAIDGNE 253

Query: 178 GKLLKESDKETGHKKTITSLAK-----AADGSHFLTGSLDKSAKLWDARTLELIKTYVTE 232
                ++ +  G +                       +  ++     A   +        
Sbjct: 254 SGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISNG 313

Query: 233 RPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKF 272
              +A+  +                +   D  + + ++  
Sbjct: 314 HDSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQSSV 353

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 368

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 42.7 bits (99), Expect = 3e-05
 Identities = 17/295 (5%), Positives = 47/295 (15%), Gaps = 21/295 (7%)

Query: 26  FSCAKDHTPTVWF--ADNGERLGTYRGHNGAVWCCDVSRDSMTLI----------TGSAD 73
                  T   W   A  G  LG   G   ++                        G   
Sbjct: 38  LPAYFAGTTENWVSCAGCGVTLGHSLGAFLSL--AVAGHSGSDFALASTSFARSAKGKRT 95

Query: 74  QTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPAD 133
              ++++  T   +         R         +    +   +                 
Sbjct: 96  DYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPG 155

Query: 134 QGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKT 193
                  + K              +         A   +        +  +        +
Sbjct: 156 --ASDDQLTKSASCFHIHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCS 213

Query: 194 ITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTERPVNAVTMSPLLDHVVLGGGQ 253
             +      G      +         A    +                      ++   +
Sbjct: 214 SQAAQANYPGMLVWAVASSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLK 273

Query: 254 DASAVTTTDHRAGKFEAKFFDKILQEEIGGVK-----GHFGPINALAFNPDGKRY 303
           +   +        +      +          +      +    +A+    DG   
Sbjct: 274 NTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISNGHDSDAIIAAQDGASD 328

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} Length = 432

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

 Score = 47.1 bits (111), Expect = 1e-06
 Identities = 34/300 (11%), Positives = 75/300 (25%), Gaps = 16/300 (5%)

Query: 18  YNKDGDLLFSCA--KDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQT 75
            + D + LFS          +      E          AV    +S     L     D  
Sbjct: 26  NDWDLENLFSVTLRDAGQIALIDGSTYEIKTVLDTGY-AVHISRLSASGRYLFVIGRDGK 84

Query: 76  AKLWNVETGAQLFTFNFD------SPARSVDFAVGDKLAVIT--TDPFMELNSAIHVKRI 127
             + ++                  S   S      DK A+      P   +     ++  
Sbjct: 85  VNMIDLWMKEPTTVAEIKIGSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPK 144

Query: 128 ARDPADQGGESVLILKGPQGRINRAVWGPLNRT-IISAGEDAIVRIWDTETGKLLKESDK 186
                 +G         P+ R+   +        I++  E   + + D      LK ++ 
Sbjct: 145 KIQS-TRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEI 203

Query: 187 ETGHKKTITSLAKAADGSHFLTGSLDKSAKLW-DARTLELIKTYVTERPVNAVTMSPLLD 245
                + +          +F+T +  ++  +  D +  +L+    T              
Sbjct: 204 SAE--RFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANFV 261

Query: 246 HVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKRYGF 305
           H   G     S +          + +       + +       G    +  +P+ +    
Sbjct: 262 HPTFGPVWATSHMGDDSVALIGTDPEGHPDNAWKILDSFPALGGGSLFIKTHPNSQYLYV 321

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} Length = 432

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

 Score = 40.2 bits (93), Expect = 3e-04
 Identities = 15/172 (8%), Positives = 40/172 (23%), Gaps = 14/172 (8%)

Query: 139 VLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLA 198
           V +    +       W   N   ++  +   + + D  T ++      +TG+   +    
Sbjct: 13  VHVAPEDRPTQQMNDWDLENLFSVTLRDAGQIALIDGSTYEIKTV--LDTGY--AVHISR 68

Query: 199 KAADGSHFLTGSLDKSAKLWDARTLELIKTY---VTERP---VNAVTMSPLLDHVVLGGG 252
            +A G +      D    + D    E        +         +        + + G  
Sbjct: 69  LSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARSIETSKMEGWEDKYAIAGAY 128

Query: 253 QDAS-AVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKRY 303
                 +   +    K                       + A+  +     +
Sbjct: 129 WPPQYVIMDGETLEPKKIQSTRGMTYD---EQEYHPEPRVAAILASHYRPEF 177

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} Length = 301

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

 Score = 41.8 bits (96), Expect = 6e-05
 Identities = 7/67 (10%), Positives = 16/67 (23%), Gaps = 2/67 (2%)

Query: 26  FSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTL-ITGSADQTAKLWNVETG 84
                 +T ++      +                V+ D   + +  S   T  + +  T 
Sbjct: 218 NVDKYFNTVSMIDTGTNKITARIPVGPD-PAGIAVTPDGKKVYVALSFCNTVSVIDTATN 276

Query: 85  AQLFTFN 91
               T  
Sbjct: 277 TITATMA 283

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} Length = 301

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

 Score = 38.7 bits (88), Expect = 6e-04
 Identities = 8/62 (12%), Positives = 19/62 (30%), Gaps = 5/62 (8%)

Query: 162 ISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSH-FLTGSLDKSAKLWDA 220
           I+  E   + + D  + K+                   + DG+  ++  +      + D 
Sbjct: 6   IANSESDNISVIDVTSNKVTATIP----VGSNPMGAVISPDGTKVYVANAHSNDVSIIDT 61

Query: 221 RT 222
            T
Sbjct: 62  AT 63

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} Length = 301

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

 Score = 36.4 bits (82), Expect = 0.003
 Identities = 5/59 (8%), Positives = 18/59 (30%), Gaps = 2/59 (3%)

Query: 27 SCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTL-ITGSADQTAKLWNVETG 84
          + ++    +V    + +   T    +       +S D   + +  +      + +  T 
Sbjct: 7  ANSESDNISVIDVTSNKVTATIPVGSN-PMGAVISPDGTKVYVANAHSNDVSIIDTATN 64

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} Length = 301

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

 Score = 36.0 bits (81), Expect = 0.004
 Identities = 11/57 (19%), Positives = 18/57 (31%), Gaps = 5/57 (8%)

Query: 173 WDTETGKLLKESDKETGHKKTITSLAKAADGSH-FLTGSLDKSAKLWDARTLELIKT 228
            DT T K+                +A   DG   ++  S   +  + D  T  +  T
Sbjct: 229 IDTGTNKITARIP----VGPDPAGIAVTPDGKKVYVALSFCNTVSVIDTATNTITAT 281

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} Length = 426

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 40.3 bits (93), Expect = 2e-04
 Identities = 18/150 (12%), Positives = 44/150 (29%), Gaps = 11/150 (7%)

Query: 154 WGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDK 213
               N   ++  +   + + D ++ K++    K       +     +A G + L    D 
Sbjct: 28  LDLPNLFSVTLRDAGQIALVDGDSKKIV----KVIDTGYAVHISRMSASGRYLLVIGRDA 83

Query: 214 SAKLWDARTLELIKTYVTERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFF 273
              + D    E  K    +  + A ++           G +        +   +F     
Sbjct: 84  RIDMIDLWAKEPTKVAEIKIGIEARSVE-----SSKFKGYEDRYTIAGAYWPPQF--AIM 136

Query: 274 DKILQEEIGGVKGHFGPINALAFNPDGKRY 303
           D    E    V      ++   ++P+ +  
Sbjct: 137 DGETLEPKQIVSTRGMTVDTQTYHPEPRVA 166

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	313
d1tbga_	340	beta1-subunit of the signal-transducing G protein	100.0
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	100.0
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	100.0
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	100.0
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	100.0
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	100.0
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	100.0
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	100.0
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	100.0
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	100.0
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	99.98
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	99.97
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	99.97
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	99.97
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	99.97
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	99.97
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	99.97
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	99.96
d1tbga_	340	beta1-subunit of the signal-transducing G protein	99.95
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	99.95
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	99.94
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	99.93
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	99.92
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.92
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	99.91
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	99.91
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	99.9
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	99.89
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	99.88
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	99.88
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.88
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	99.87
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.87
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.84
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	99.84
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	99.83
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	99.79
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	99.75
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	99.73
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	99.73
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	99.69
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	99.68
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	99.64
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	99.55
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	99.51
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	99.38
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	99.33
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	99.19
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	99.16
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	99.11
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	99.0
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	98.98
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	98.96
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	98.92
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	98.9
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	98.83
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	98.63
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	98.58
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	98.57
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	98.49
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	98.44
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	98.36
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	98.28
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	98.2
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	98.11
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	98.08
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	97.93
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	97.92
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	97.14
d2ad6a1	571	Methanol dehydrogenase, heavy chain {Methylophilus	96.76
d1fwxa2	459	Nitrous oxide reductase, N-terminal domain {Paraco	96.66
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	96.65
d1kv9a2	560	Quinoprotein alcohol dehydrogenase, N-terminal dom	96.14
d1kb0a2	573	Quinoprotein alcohol dehydrogenase, N-terminal dom	95.96
d2ad6a1	571	Methanol dehydrogenase, heavy chain {Methylophilus	95.95
d1kb0a2	573	Quinoprotein alcohol dehydrogenase, N-terminal dom	95.62
d1flga_	582	Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax	95.44
d1v04a_	340	Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory	95.2
d1kv9a2	560	Quinoprotein alcohol dehydrogenase, N-terminal dom	95.2
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	94.94
d1w6sa_	596	Methanol dehydrogenase, heavy chain {Methylobacter	94.51
d1fwxa2	459	Nitrous oxide reductase, N-terminal domain {Paraco	94.11
d1utca2	327	Clathrin heavy-chain terminal domain {Rat (Rattus	93.4
d1npea_	263	Nidogen {Mouse (Mus musculus) [TaxId: 10090]}	92.5
d1qfma1	430	Prolyl oligopeptidase, N-terminal domain {Pig (Sus	92.03
d1qfma1	430	Prolyl oligopeptidase, N-terminal domain {Pig (Sus	91.14
d1flga_	582	Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax	91.04
d1utca2	327	Clathrin heavy-chain terminal domain {Rat (Rattus	90.98
d1w6sa_	596	Methanol dehydrogenase, heavy chain {Methylobacter	89.64

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=5.6e-38  Score=265.47  Aligned_cols=274  Identities=19%  Similarity=0.298  Sum_probs=213.1

Q ss_pred             ccccccccceeEEEEccCCCEEEEeeCCCCeEEEeCCCCcEEEEecCCCCceEEEEECCCCCeEEEeeCCCcEEEEECCC
Q 021399            4 ILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVET   83 (313)
Q Consensus         4 ~~l~~h~~~v~~~~fs~~g~~l~s~s~d~~i~iw~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~v~vWd~~~   83 (313)
                      ++|+||.++|++++|+|++++|+||+.||.|+|||..+++.+.++.+|...|.+++|+|+++++++|+.|+++++|+...
T Consensus        49 ~tL~GH~~~I~~l~~s~~~~~l~sgs~Dg~v~iWd~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~~i~~~~~~~  128 (340)
T d1tbga_          49 RTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKT  128 (340)
T ss_dssp             EEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEEECSCSCEEEEEECTTSSEEEEEETTCCEEEEESSS
T ss_pred             EEECCCCCCEEEEEECCCCCEEEEEECCCceeeeecccceeEEEEecccccEEeeEeeccceeeeeecccceeecccccc
Confidence            47999999999999999999999999999999999999999999999999999999999999999999999999999765


Q ss_pred             Ce----EEEEecC-CCCeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEccCC
Q 021399           84 GA----QLFTFNF-DSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLN  158 (313)
Q Consensus        84 ~~----~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~  158 (313)
                      ..    ....+.. ...........+........+.....         ..   ............+...+....+.+..
T Consensus       129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~---~~~~~~~~~~~~~~~~~~~~~~~~~~  196 (340)
T d1tbga_         129 REGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCAL---------WD---IETGQQTTTFTGHTGDVMSLSLAPDT  196 (340)
T ss_dssp             SCSCCCEEEEECCCSSCEEEEEEEETTEEEEEETTTEEEE---------EE---TTTTEEEEEEECCSSCEEEEEECTTS
T ss_pred             cccccccceecccccccccccccccccccccccccccccc---------cc---cccccccccccccceeEeeecccccc
Confidence            43    2222222 12222222222333333222211100         00   01122333444566678888899999


Q ss_pred             CEEEEeeCCCeEEEEECCCCceeeecccccCceeceEEEEECCCCCEEEEeeCCCcEEEEECCCCcEEEEEe---cCCce
Q 021399          159 RTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYV---TERPV  235 (313)
Q Consensus       159 ~~i~t~~~d~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~---~~~~~  235 (313)
                      ..+++++.|+.|++||+++++++..+.   +|...|++++|+|++++|++|+.|+.|++||++....+..+.   ....+
T Consensus       197 ~~~~~~~~d~~v~i~d~~~~~~~~~~~---~h~~~i~~v~~~p~~~~l~s~s~d~~i~~~~~~~~~~~~~~~~~~~~~~i  273 (340)
T d1tbga_         197 RLFVSGACDASAKLWDVREGMCRQTFT---GHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGI  273 (340)
T ss_dssp             SEEEEEETTTEEEEEETTTTEEEEEEC---CCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCE
T ss_pred             ceeEEeecCceEEEEECCCCcEEEEEe---CCCCCeEEEEECCCCCEEEEEeCCCeEEEEeecccccccccccccccCce
Confidence            999999999999999999988877654   688999999999999999999999999999999988877764   24568


Q ss_pred             eEEEeccCCCEEEEcccccCceeEeeccCCCceeeeeeehhhhhhhccccccccceeEEEECCCCCeeEEE
Q 021399          236 NAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKRYGFL  306 (313)
Q Consensus       236 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~fspdgk~~~~~  306 (313)
                      .+++|+|++..+++++. ++             .+++||..+++.+..+.+|.++|++++|+|||++++-.
T Consensus       274 ~~~~~s~~~~~l~~g~~-dg-------------~i~iwd~~~~~~~~~~~~H~~~V~~l~~s~d~~~l~s~  330 (340)
T d1tbga_         274 TSVSFSKSGRLLLAGYD-DF-------------NCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATG  330 (340)
T ss_dssp             EEEEECSSSCEEEEEET-TS-------------CEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEE
T ss_pred             EEEEECCCCCEEEEEEC-CC-------------EEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEEEE
Confidence            99999999988776543 32             35677777777788889999999999999999988754

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=6.1e-37  Score=260.58  Aligned_cols=266  Identities=14%  Similarity=0.172  Sum_probs=209.9

Q ss_pred             ccccceeEEEEccCCCEEEEeeCCCCeEEEeCCCCcE-----EEEecCCCCceEEEEECCCCCeEEEeeCCCcEEEEECC
Q 021399            8 GHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGER-----LGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVE   82 (313)
Q Consensus         8 ~h~~~v~~~~fs~~g~~l~s~s~d~~i~iw~~~~~~~-----~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~v~vWd~~   82 (313)
                      +|...|.|++|+|+|++|++|+ ||.|+|||+.++..     .....+|.+.|.+++|+|++++|++|+.|++|++||+.
T Consensus        49 ~H~~~V~~v~fs~~g~~latg~-dg~V~iWd~~~~~~~~~~~~~~~~~h~~~I~~v~~s~dg~~l~s~~~dg~i~iwd~~  127 (337)
T d1gxra_          49 NHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLA  127 (337)
T ss_dssp             CCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECC
T ss_pred             CCCCcEEEEEECCCCCEEEEEE-CCEEEEEEccCCcccceeEEeeecCCCCcEEEEEEcCCCCEEEEeeccccccccccc
Confidence            7999999999999999999987 89999999876542     23446899999999999999999999999999999987


Q ss_pred             CCeE--EEEec-CCCCeeEEEeecCCeEEEEE-CCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEccCC
Q 021399           83 TGAQ--LFTFN-FDSPARSVDFAVGDKLAVIT-TDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLN  158 (313)
Q Consensus        83 ~~~~--~~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~  158 (313)
                      ....  ...+. ....+..+.+.++...++.. .+...      ..+++      ..++......+|...+.+++|++.+
T Consensus       128 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i------~~~~~------~~~~~~~~~~~~~~~v~~l~~s~~~  195 (337)
T d1gxra_         128 APTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNI------AVWDL------HNQTLVRQFQGHTDGASCIDISNDG  195 (337)
T ss_dssp             CC--EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCE------EEEET------TTTEEEEEECCCSSCEEEEEECTTS
T ss_pred             cccccccccccccccccccccccccccccccccccccc------ccccc------ccccccccccccccccccccccccc
Confidence            6543  33332 34566777888876665543 22222      22211      1234556677888999999999999


Q ss_pred             CEEEEeeCCCeEEEEECCCCceeeecccccCceeceEEEEECCCCCEEEEeeCCCcEEEEECCCCcEEEEEecCCceeEE
Q 021399          159 RTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTERPVNAV  238 (313)
Q Consensus       159 ~~i~t~~~d~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~  238 (313)
                      ..+++++.|+.|++||+++++.+...    .|...|.+++|+|+++++++++.|+.+++||+++++......+...+.++
T Consensus       196 ~~~~~~~~d~~v~i~d~~~~~~~~~~----~~~~~i~~l~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~i~~v  271 (337)
T d1gxra_         196 TKLWTGGLDNTVRSWDLREGRQLQQH----DFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQLHLHESCVLSL  271 (337)
T ss_dssp             SEEEEEETTSEEEEEETTTTEEEEEE----ECSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSCEEEECCCSSCEEEE
T ss_pred             cccccccccccccccccccceeeccc----ccccceEEEEEcccccccceeccccccccccccccccccccccccccceE
Confidence            99999999999999999998877654    36788999999999999999999999999999999988777778889999


Q ss_pred             EeccCCCEEEEcccccCceeEeeccCCCceeeeeeehhhhhhhccccccccceeEEEECCCCCeeEE
Q 021399          239 TMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKRYGF  305 (313)
Q Consensus       239 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~fspdgk~~~~  305 (313)
                      +|+|+++.+++++ .| +.            +++||..+++.+..+ .|.++|++++|+|||++++.
T Consensus       272 ~~s~~g~~l~s~s-~D-g~------------i~iwd~~~~~~~~~~-~~~~~v~~~~~s~d~~~l~t  323 (337)
T d1gxra_         272 KFAYCGKWFVSTG-KD-NL------------LNAWRTPYGASIFQS-KESSSVLSCDISVDDKYIVT  323 (337)
T ss_dssp             EECTTSSEEEEEE-TT-SE------------EEEEETTTCCEEEEE-ECSSCEEEEEECTTSCEEEE
T ss_pred             EECCCCCEEEEEe-CC-Ce------------EEEEECCCCCEEEEc-cCCCCEEEEEEeCCCCEEEE
Confidence            9999998776654 33 23            345555555554443 48899999999999998764

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=7.9e-37  Score=255.01  Aligned_cols=273  Identities=22%  Similarity=0.283  Sum_probs=224.7

Q ss_pred             cccccccceeEEEEccCCCEEEEeeCCCCeEEEeCCCCcEEEEecCCCCceEEEEECCCCCeEEEeeCCCcEEEEECCCC
Q 021399            5 LMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETG   84 (313)
Q Consensus         5 ~l~~h~~~v~~~~fs~~g~~l~s~s~d~~i~iw~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~v~vWd~~~~   84 (313)
                      .|+||+++|++++|+|++++|+||+.|++|+|||+.+++.+.++++|.+.|.+++|+|++..+++++.++++.+|+....
T Consensus        12 ~L~GH~~~I~~l~~sp~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   91 (317)
T d1vyhc1          12 ALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGF   91 (317)
T ss_dssp             EEECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEETTSS
T ss_pred             EEcCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCEEEEEeCCCCcEEEEeeeccccccccccccccccccccccc
Confidence            68999999999999999999999999999999999999999999999999999999999999999999999999999887


Q ss_pred             eEEEEec-CCCCeeEEEeecCCeEEEE-ECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEccCCCEEE
Q 021399           85 AQLFTFN-FDSPARSVDFAVGDKLAVI-TTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTII  162 (313)
Q Consensus        85 ~~~~~~~-~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~  162 (313)
                      +...... .......+.+.++...++. ..+...      .++++      ..+.....+.+|...+..+.++|++++++
T Consensus        92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~------~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  159 (317)
T d1vyhc1          92 ECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTI------KMWEV------QTGYCVKTFTGHREWVRMVRPNQDGTLIA  159 (317)
T ss_dssp             CEEECCCCCSSCEEEEEECSSSSEEEEEETTSEE------EEEET------TTCCEEEEEECCSSCEEEEEECTTSSEEE
T ss_pred             ccccccccccccceeeeccCCCceEEeeccCcce------eEeec------ccceeeeEEccCCCcceeeecccCCCEEE
Confidence            6655443 3456667777776554433 333222      22222      23445667788999999999999999999


Q ss_pred             EeeCCCeEEEEECCCCceeeecccccCceeceEEEEECCCC--------------------CEEEEeeCCCcEEEEECCC
Q 021399          163 SAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADG--------------------SHFLTGSLDKSAKLWDART  222 (313)
Q Consensus       163 t~~~d~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~--------------------~~l~s~s~dg~i~iwd~~~  222 (313)
                      +++.|+.|++|+..+++.+..+.   +|...+.+++++|++                    ..+++++.|+.|++||+++
T Consensus       160 ~~~~d~~v~~~~~~~~~~~~~~~---~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~  236 (317)
T d1vyhc1         160 SCSNDQTVRVWVVATKECKAELR---EHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVST  236 (317)
T ss_dssp             EEETTSCEEEEETTTCCEEEEEC---CCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTT
T ss_pred             EEeCCCeEEEEeeccceeeEEEe---cCCCCceEEEEeeccccceeeccccceeeeeccCCceeEeccCCCEEEEEECCC
Confidence            99999999999999888766553   577788888877654                    4699999999999999999


Q ss_pred             CcEEEEEe-cCCceeEEEeccCCCEEEEcccccCceeEeeccCCCceeeeeeehhhhhhhccccccccceeEEEECCCCC
Q 021399          223 LELIKTYV-TERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGK  301 (313)
Q Consensus       223 ~~~~~~~~-~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~fspdgk  301 (313)
                      ++++.++. +...+.+++++|++..+++++. |+             .+++||..+++.+..+.+|.++|++++|+||++
T Consensus       237 ~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~-dg-------------~i~iwd~~~~~~~~~~~~h~~~V~~~~~s~~~~  302 (317)
T d1vyhc1         237 GMCLMTLVGHDNWVRGVLFHSGGKFILSCAD-DK-------------TLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAP  302 (317)
T ss_dssp             TEEEEEEECCSSCEEEEEECSSSSCEEEEET-TT-------------EEEEECCTTSCCCEEEECCSSCEEEEEECSSSS
T ss_pred             CcEEEEEeCCCCCEEEEEECCCCCEEEEEEC-CC-------------eEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCC
Confidence            99998886 4668999999999988776543 32             356777777777888899999999999999999


Q ss_pred             eeEEE
Q 021399          302 RYGFL  306 (313)
Q Consensus       302 ~~~~~  306 (313)
                      +|+..
T Consensus       303 ~l~s~  307 (317)
T d1vyhc1         303 YVVTG  307 (317)
T ss_dssp             CEEEE
T ss_pred             EEEEE
Confidence            88753

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=3.6e-36  Score=259.25  Aligned_cols=232  Identities=17%  Similarity=0.217  Sum_probs=188.2

Q ss_pred             cccceeEEEEccCCCEEEEeeCCCCeEEEeCCCCc--EEEEecCCCCceEEEEECCCCCeEEEeeCCCcEEEEECCCCeE
Q 021399            9 HERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGE--RLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQ   86 (313)
Q Consensus         9 h~~~v~~~~fs~~g~~l~s~s~d~~i~iw~~~~~~--~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~v~vWd~~~~~~   86 (313)
                      +.++|+|++|+|||++||+|+.|+.|+|||.++++  .+..+++|.++|.+++|+|++++|+||+.|++|++||+.++..
T Consensus         6 ~~~pIt~~~~s~dg~~la~~~~~~~i~iw~~~~~~~~~~~~l~gH~~~V~~l~fsp~~~~l~s~s~D~~i~vWd~~~~~~   85 (371)
T d1k8kc_           6 LVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTW   85 (371)
T ss_dssp             CSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTEE
T ss_pred             CCCCeEEEEECCCCCEEEEEeCCCEEEEEECCCCCEEEEEEecCCCCCEEEEEECCCCCEEEEEECCCeEEEEeeccccc
Confidence            34789999999999999999999999999998775  6788999999999999999999999999999999999876543


Q ss_pred             EEEecCCCCeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEccCCCEEEEeeC
Q 021399           87 LFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGE  166 (313)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~t~~~  166 (313)
                      ..                                                  ...+.+|...+.++.|+|+++.+++++.
T Consensus        86 ~~--------------------------------------------------~~~~~~~~~~v~~i~~~p~~~~l~~~s~  115 (371)
T d1k8kc_          86 KP--------------------------------------------------TLVILRINRAARCVRWAPNEKKFAVGSG  115 (371)
T ss_dssp             EE--------------------------------------------------EEECCCCSSCEEEEEECTTSSEEEEEET
T ss_pred             cc--------------------------------------------------ccccccccccccccccccccccceeecc
Confidence            21                                                  1223346678899999999999999999


Q ss_pred             CCeEEEEECCCCceeee-cccccCceeceEEEEECCCCCEEEEeeCCCcEEEEECCCCc------------------EEE
Q 021399          167 DAIVRIWDTETGKLLKE-SDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLE------------------LIK  227 (313)
Q Consensus       167 d~~i~lwd~~~~~~~~~-~~~~~~h~~~v~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~------------------~~~  227 (313)
                      |+.|++|+......... ......|...|.+++|+|++.+|++|+.|++|++||+....                  ++.
T Consensus       116 d~~i~i~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~D~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~  195 (371)
T d1k8kc_         116 SRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMF  195 (371)
T ss_dssp             TSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEE
T ss_pred             cCcceeeeeecccccccccccccccccccccccccccccceeccccCcEEEEEeeccCccccccccccccccccceeeee
Confidence            99999998765443211 12234688999999999999999999999999999976532                  233


Q ss_pred             EEe-cCCceeEEEeccCCCEEEEcccccCceeEeeccCCCceeeeeeehhhhhhhccccccccceeEEEECCCCCeeE
Q 021399          228 TYV-TERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKRYG  304 (313)
Q Consensus       228 ~~~-~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~fspdgk~~~  304 (313)
                      ... +...+.+++|+|+++.+++++ .|+             .+++||..+++.+..+.+|..+|++++|+|||+.++
T Consensus       196 ~~~~~~~~v~~~~~s~~g~~l~s~~-~d~-------------~i~iwd~~~~~~~~~~~~~~~~v~s~~fs~d~~~la  259 (371)
T d1k8kc_         196 ESSSSCGWVHGVCFSANGSRVAWVS-HDS-------------TVCLADADKKMAVATLASETLPLLAVTFITESSLVA  259 (371)
T ss_dssp             ECCCCSSCEEEEEECSSSSEEEEEE-TTT-------------EEEEEEGGGTTEEEEEECSSCCEEEEEEEETTEEEE
T ss_pred             eccCccCcEEEEEeecccccccccc-cCC-------------cceEEeeecccceeeeecccccceeeeecCCCCEEE
Confidence            322 344689999999998876654 332             256788777778888889999999999999998875

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=6.9e-35  Score=251.58  Aligned_cols=272  Identities=24%  Similarity=0.369  Sum_probs=201.7

Q ss_pred             ccccceeEEEEccCCCEEEEeeCCCCeEEEeCCCCcEEEEec------------------CCCCceEEEEECCCCCeEEE
Q 021399            8 GHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYR------------------GHNGAVWCCDVSRDSMTLIT   69 (313)
Q Consensus         8 ~h~~~v~~~~fs~~g~~l~s~s~d~~i~iw~~~~~~~~~~~~------------------~H~~~V~~~~~~~~~~~l~s   69 (313)
                      +|++.|+|++|+|||++|++|+ |+.|+|||+.+++.+.++.                  +|...|.+++|+|++++|++
T Consensus        60 ~H~~~V~~l~fs~dg~~lasg~-d~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~~~~l~s  138 (388)
T d1erja_          60 DHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLAT  138 (388)
T ss_dssp             ECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSSEEEE
T ss_pred             CCCCcEEEEEECCCCCEEEEEe-CCeEEEEEecccceEeeecccccccccccccccccccCCCCCEEEEEECCCCCccee
Confidence            6999999999999999999987 8999999999998877664                  46677999999999999999


Q ss_pred             eeCCCcEEEEECCCCeEEEEec-CCCCeeEEEeecCCeEEEE-ECCCceeccccceeeeeeeCCCCCCCceEEEecCCCC
Q 021399           70 GSADQTAKLWNVETGAQLFTFN-FDSPARSVDFAVGDKLAVI-TTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQG  147 (313)
Q Consensus        70 ~s~D~~v~vWd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  147 (313)
                      |+.||+|++||...++.+.... +...+..+.+.+.....+. ..+...      .+++..      ..........+..
T Consensus       139 ~~~dg~v~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~i------~~~d~~------~~~~~~~~~~~~~  206 (388)
T d1erja_         139 GAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTV------RIWDLR------TGQCSLTLSIEDG  206 (388)
T ss_dssp             EETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEE------EEEETT------TTEEEEEEECSSC
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccceee------eeeecc------ccccccccccccc
Confidence            9999999999999988776665 4567788888876544443 333222      222211      1222333333333


Q ss_pred             ceEEEEEccCCCEEEEeeCCCeEEEEECCCCceeeeccc----ccCceeceEEEEECCCCCEEEEeeCCCcEEEEECCCC
Q 021399          148 RINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDK----ETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTL  223 (313)
Q Consensus       148 ~i~~~~~~~~~~~i~t~~~d~~i~lwd~~~~~~~~~~~~----~~~h~~~v~~~~~s~~~~~l~s~s~dg~i~iwd~~~~  223 (313)
                      .+....+.+++++|++++.|+.|++||..++..+..+..    ..+|...|++++|+|++++|++++.||.|++||++++
T Consensus       207 ~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d~~i~iwd~~~~  286 (388)
T d1erja_         207 VTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNA  286 (388)
T ss_dssp             EEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC---
T ss_pred             cccccccCCCCCeEEEEcCCCeEEEeecccCccceeeccccccccCCCCCEEEEEECCCCCEEEEEECCCcEEEEeccCC
Confidence            333344455788999999999999999998876655432    2468889999999999999999999999999999875


Q ss_pred             cEEEE------------E-ecCCceeEEEeccCCCEEEEcccccCceeEeeccCCCceeeeeeehhhhhhhccccccccc
Q 021399          224 ELIKT------------Y-VTERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGP  290 (313)
Q Consensus       224 ~~~~~------------~-~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~  290 (313)
                      .....            . .+...+.+++|+|++..+++++. |+             .+++||..+++.+..+++|.+.
T Consensus       287 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~-dg-------------~i~vwd~~~~~~~~~l~~H~~~  352 (388)
T d1erja_         287 NNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSK-DR-------------GVLFWDKKSGNPLLMLQGHRNS  352 (388)
T ss_dssp             ------------CEEEEEECCSSCEEEEEECGGGCEEEEEET-TS-------------EEEEEETTTCCEEEEEECCSSC
T ss_pred             ccccccccccccceeeecccccceEEEEEECCCCCEEEEEeC-CC-------------EEEEEECCCCcEEEEEeCCCCC
Confidence            43221            1 23456899999999987766543 32             3567787778888889999999


Q ss_pred             eeEEE------ECCCCCeeEEE
Q 021399          291 INALA------FNPDGKRYGFL  306 (313)
Q Consensus       291 V~~~~------fspdgk~~~~~  306 (313)
                      |++++      |+|||++++..
T Consensus       353 V~~~~~~~~~~~spd~~~l~s~  374 (388)
T d1erja_         353 VISVAVANGSSLGPEYNVFATG  374 (388)
T ss_dssp             EEEEEECSSCTTCTTCEEEEEE
T ss_pred             EEEEEEecCcccCCCCCEEEEE
Confidence            99997      56788887754

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=9.8e-35  Score=244.35  Aligned_cols=264  Identities=16%  Similarity=0.183  Sum_probs=199.3

Q ss_pred             cccceeEEEEccCCCEEEEeeCCCCeEEEeCCCCcEEEEecCCCCceEEEEECCCCCeEEEeeCCCcEEEEECCCCeEE-
Q 021399            9 HERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQL-   87 (313)
Q Consensus         9 h~~~v~~~~fs~~g~~l~s~s~d~~i~iw~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~v~vWd~~~~~~~-   87 (313)
                      +.+.+.+++++|+|+.|+.++ ++.|.+|++++.+....+.+|.+.|++++|+|+|++|++|+.||+|++||+.+++.. 
T Consensus        16 ~r~~~~~~a~~~~g~~l~~~~-~~~v~i~~~~~~~~~~~~~~H~~~v~~~~~sp~g~~latg~~dg~i~iwd~~~~~~~~   94 (311)
T d1nr0a1          16 ARGTAVVLGNTPAGDKIQYCN-GTSVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHIL   94 (311)
T ss_dssp             CTTCCCCCEECTTSSEEEEEE-TTEEEEEETTCSSCCEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCCE
T ss_pred             CCCCeEEEEEcCCCCEEEEEe-CCEEEEEECCCCceeEEEcCCCCCEEEEEEeCCCCeEeccccCceEeeeeeecccccc
Confidence            334566789999999999886 567999999999999999999999999999999999999999999999999887543 


Q ss_pred             -EEe-cCCCCeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEccCCCE-EEEe
Q 021399           88 -FTF-NFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRT-IISA  164 (313)
Q Consensus        88 -~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-i~t~  164 (313)
                       ..+ .+..++.++.|+++++.++......   .....++++.      .+.....+.+|...|.+++|+|++++ +++|
T Consensus        95 ~~~~~~~~~~v~~v~~s~d~~~l~~~~~~~---~~~~~v~~~~------~~~~~~~l~~h~~~v~~v~~~~~~~~~l~sg  165 (311)
T d1nr0a1          95 KTTIPVFSGPVKDISWDSESKRIAAVGEGR---ERFGHVFLFD------TGTSNGNLTGQARAMNSVDFKPSRPFRIISG  165 (311)
T ss_dssp             EEEEECSSSCEEEEEECTTSCEEEEEECCS---SCSEEEEETT------TCCBCBCCCCCSSCEEEEEECSSSSCEEEEE
T ss_pred             ccccccccCccccccccccccccccccccc---cccccccccc------cccccccccccccccccccccccceeeeccc
Confidence             223 3567889999999877665543210   0111222211      12233456788899999999999875 7889


Q ss_pred             eCCCeEEEEECCCCceeeecccccCceeceEEEEECCCCCEEEEeeCCCcEEEEECCCCcEEEEEec--------CCcee
Q 021399          165 GEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVT--------ERPVN  236 (313)
Q Consensus       165 ~~d~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~--------~~~~~  236 (313)
                      +.|+.|++||.++++......   .|...|++++++|++++|++++.|+.|++||++++..+..+..        ...+.
T Consensus       166 s~d~~i~i~d~~~~~~~~~~~---~~~~~i~~v~~~p~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~h~~~V~  242 (311)
T d1nr0a1         166 SDDNTVAIFEGPPFKFKSTFG---EHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVF  242 (311)
T ss_dssp             ETTSCEEEEETTTBEEEEEEC---CCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEE
T ss_pred             ccccccccccccccccccccc---cccccccccccCcccccccccccccccccccccccccccccccccccccccccccc
Confidence            999999999999887765543   5889999999999999999999999999999999988877642        34689


Q ss_pred             EEEeccCCCEEEEcccccCceeEeeccCCCceeeeeeehhhhhhhccccccc---cceeEEEECCC
Q 021399          237 AVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHF---GPINALAFNPD  299 (313)
Q Consensus       237 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~---~~V~~~~fspd  299 (313)
                      +++|+|+++.+++++ .|+ .+            ++||..+++.+..+..|.   ..+.++.|+++
T Consensus       243 ~~~~s~~~~~l~tgs-~Dg-~v------------~iwd~~t~~~~~~l~~~~~~~~~~~~~~~~~~  294 (311)
T d1nr0a1         243 GLTWSPDGTKIASAS-ADK-TI------------KIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQ  294 (311)
T ss_dssp             EEEECTTSSEEEEEE-TTS-EE------------EEEETTTTEEEEEEECCSSGGGCEEEEEECSS
T ss_pred             ccccCCCCCEEEEEe-CCC-eE------------EEEECCCCcEEEEEECCCCccceEEEEEecCC
Confidence            999999998877654 332 33            455555555555444443   34455555544

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=9.4e-34  Score=238.31  Aligned_cols=235  Identities=15%  Similarity=0.155  Sum_probs=187.0

Q ss_pred             cccccccceeEEEEccCCCEEEEeeCCCCeEEEeCCCCcE--EEEecCCCCceEEEEECCCCCeEEEeeC--CCcEEEEE
Q 021399            5 LMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGER--LGTYRGHNGAVWCCDVSRDSMTLITGSA--DQTAKLWN   80 (313)
Q Consensus         5 ~l~~h~~~v~~~~fs~~g~~l~s~s~d~~i~iw~~~~~~~--~~~~~~H~~~V~~~~~~~~~~~l~s~s~--D~~v~vWd   80 (313)
                      .+.+|.+.|.+++|+|+|++|++|+.||.|+|||+.+++.  ..++.+|.++|.+++|+|+++++++++.  +..+++|+
T Consensus        53 ~~~~H~~~v~~~~~sp~g~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~~~~~~~~~v~~  132 (311)
T d1nr0a1          53 IYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFL  132 (311)
T ss_dssp             EECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCCEEEEEECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEE
T ss_pred             EEcCCCCCEEEEEEeCCCCeEeccccCceEeeeeeeccccccccccccccCccccccccccccccccccccccccccccc
Confidence            5689999999999999999999999999999999988764  4568899999999999999999999875  56799999


Q ss_pred             CCCCeEEEEec-CCCCeeEEEeecCCeE-E-EEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEccC
Q 021399           81 VETGAQLFTFN-FDSPARSVDFAVGDKL-A-VITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPL  157 (313)
Q Consensus        81 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~  157 (313)
                      +++++....+. +...+.++.|+|++.. + .+..+..      +.++++      ...+.......|..+|.++.|+|+
T Consensus       133 ~~~~~~~~~l~~h~~~v~~v~~~~~~~~~l~sgs~d~~------i~i~d~------~~~~~~~~~~~~~~~i~~v~~~p~  200 (311)
T d1nr0a1         133 FDTGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNT------VAIFEG------PPFKFKSTFGEHTKFVHSVRYNPD  200 (311)
T ss_dssp             TTTCCBCBCCCCCSSCEEEEEECSSSSCEEEEEETTSC------EEEEET------TTBEEEEEECCCSSCEEEEEECTT
T ss_pred             cccccccccccccccccccccccccceeeecccccccc------cccccc------cccccccccccccccccccccCcc
Confidence            99887665544 3456888999986543 2 2333332      223322      234566677889999999999999


Q ss_pred             CCEEEEeeCCCeEEEEECCCCceeeeccc----ccCceeceEEEEECCCCCEEEEeeCCCcEEEEECCCCcEEEEEecCC
Q 021399          158 NRTIISAGEDAIVRIWDTETGKLLKESDK----ETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTER  233 (313)
Q Consensus       158 ~~~i~t~~~d~~i~lwd~~~~~~~~~~~~----~~~h~~~v~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~  233 (313)
                      ++++++++.|+.|++||..++.....+..    ..+|...|++++|+|++++|++|+.||+|++||++++++++++....
T Consensus       201 ~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~tgs~Dg~v~iwd~~t~~~~~~l~~~~  280 (311)
T d1nr0a1         201 GSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGT  280 (311)
T ss_dssp             SSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCS
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccCCCCCEEEEEeCCCeEEEEECCCCcEEEEEECCC
Confidence            99999999999999999988776654432    24688999999999999999999999999999999999999886433


Q ss_pred             --ceeEEEeccCCCEEEEcc
Q 021399          234 --PVNAVTMSPLLDHVVLGG  251 (313)
Q Consensus       234 --~~~~~~~~p~~~~~~~~~  251 (313)
                        ....+++.+.++.+++++
T Consensus       281 ~~~~~~~~~~~~~~~l~s~s  300 (311)
T d1nr0a1         281 RIEDQQLGIIWTKQALVSIS  300 (311)
T ss_dssp             SGGGCEEEEEECSSCEEEEE
T ss_pred             CccceEEEEEecCCEEEEEE
Confidence              233445555566666554

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=4e-34  Score=238.48  Aligned_cols=270  Identities=15%  Similarity=0.133  Sum_probs=192.8

Q ss_pred             ccccccccceeEEEEccCCCEEEEeeCCCCeEEEeCCCCcEEEEec-CCCCceEEEEECCCCCeEEEeeCCCcEEEEECC
Q 021399            4 ILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYR-GHNGAVWCCDVSRDSMTLITGSADQTAKLWNVE   82 (313)
Q Consensus         4 ~~l~~h~~~v~~~~fs~~g~~l~s~s~d~~i~iw~~~~~~~~~~~~-~H~~~V~~~~~~~~~~~l~s~s~D~~v~vWd~~   82 (313)
                      ++++||.++|++++|+|||++|+||+.|+.|++||+++++.+.++. +|...|.+++|+|+++ +++++.|+.+++|+..
T Consensus         6 ~~~~GH~~~V~~l~~s~dg~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~h~~~v~~v~~~~~g~-~~~~~~d~~v~~~~~~   84 (299)
T d1nr0a2           6 QVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGD-LFTVSWDDHLKVVPAG   84 (299)
T ss_dssp             EEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTSC-EEEEETTTEEEEECSS
T ss_pred             eEcCCCCCCcEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEcCCCCCcEEEEEeeccce-eecccceeeEEEeccC
Confidence            5899999999999999999999999999999999999999988885 6999999999999986 5677889999999986


Q ss_pred             CCeEE----EEecCCCCeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEccCC
Q 021399           83 TGAQL----FTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLN  158 (313)
Q Consensus        83 ~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~  158 (313)
                      .....    ........+..+.+.+++.+++........+...              .......  ....+..++|+|++
T Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~i~~~~~--------------~~~~~~~--~~~~~~~~~~s~~~  148 (299)
T d1nr0a2          85 GSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSH--------------GKLTEVP--ISYNSSCVALSNDK  148 (299)
T ss_dssp             SSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEET--------------TEEEEEE--CSSCEEEEEECTTS
T ss_pred             Ccccccccccccccccccccccccccccccccccccccccccc--------------ccccccc--cccccccccccccc
Confidence            53211    1112344566777777766655544332211111              0111111  22356788999999


Q ss_pred             CEEEEeeCCCeEEEEECCCCceeeecccccCceeceEEEEECCCCCEEEEeeCCCcEEEEECCCCcEEEEEe----cCCc
Q 021399          159 RTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYV----TERP  234 (313)
Q Consensus       159 ~~i~t~~~d~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~----~~~~  234 (313)
                      +++++|+.|+.|++||+++++.....  ...|...|++++|+|++++|++++.|+.|++||++++..+....    +..+
T Consensus       149 ~~l~~g~~dg~i~~~d~~~~~~~~~~--~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~h~~~  226 (299)
T d1nr0a2         149 QFVAVGGQDSKVHVYKLSGASVSEVK--TIVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAK  226 (299)
T ss_dssp             CEEEEEETTSEEEEEEEETTEEEEEE--EEECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEESCCCCCCCCSSC
T ss_pred             cccccccccccccccccccccccccc--cccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            99999999999999999876543321  12578899999999999999999999999999998877654432    3567


Q ss_pred             eeEEEeccCCCEEEEcccccCceeEeeccCCCceeeeeeehhhhhhhccccccccceeEEEECCCCCeeE
Q 021399          235 VNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKRYG  304 (313)
Q Consensus       235 ~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~fspdgk~~~  304 (313)
                      +.+++|+|++..+++++. | +.+.+||.+.+.....         +.....|...|.++.| |+++.++
T Consensus       227 v~~l~~s~~~~~l~sgs~-d-g~i~iwd~~~~~~~~~---------~~~~~~~~~~v~~~~~-~~~~~l~  284 (299)
T d1nr0a2         227 VACVSWSPDNVRLATGSL-D-NSVIVWNMNKPSDHPI---------IIKGAHAMSSVNSVIW-LNETTIV  284 (299)
T ss_dssp             EEEEEECTTSSEEEEEET-T-SCEEEEETTCTTSCCE---------EETTSSTTSCEEEEEE-EETTEEE
T ss_pred             cccccccccccceEEEcC-C-CEEEEEECCCCCcceE---------EEecCCCCCcEEEEEE-CCCCEEE
Confidence            999999999988776543 3 3344444333221111         1112234567777765 5556554

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.3e-32  Score=231.91  Aligned_cols=277  Identities=22%  Similarity=0.380  Sum_probs=186.9

Q ss_pred             CcccccccccceeEEEEccCCCEEEEeeCCCCeEEEeCCCCcEEEEecCCCCceEEEEECCCCCeEEEeeCCCcEEEEEC
Q 021399            2 RPILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNV   81 (313)
Q Consensus         2 ~~~~l~~h~~~v~~~~fs~~g~~l~s~s~d~~i~iw~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~v~vWd~   81 (313)
                      .+.+|+||++.|.+ +++++|++|+|||.|++|+|||+.+++++.++.+|.+.|++++|+++  +|++|+.|+++++|+.
T Consensus         8 ~~~~l~GH~~~V~s-~~~~~g~~l~sgs~Dg~i~vWd~~~~~~~~~~~~h~~~V~~v~~~~~--~l~s~s~D~~~~~~~~   84 (342)
T d2ovrb2           8 SPKVLKGHDDHVIT-CLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDN--IIISGSTDRTLKVWNA   84 (342)
T ss_dssp             CCEEEECSTTSCEE-EEEEETTEEEEEETTSCEEEEETTTCCEEEECCCCSSCEEEEEEETT--EEEEEETTSCEEEEET
T ss_pred             cCEEECCcCCceEE-EEEECCCEEEEEeCCCeEEEEECCCCCEEEEEeCCCCCEEEEEeCCC--ccccceeccccccccc
Confidence            35689999999865 46778999999999999999999999999999999999999999875  8999999999999999


Q ss_pred             CCCeEEEEecCCCCeeEEEeecCCeEEEEECCCceec----------------------------------cccceeeee
Q 021399           82 ETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMEL----------------------------------NSAIHVKRI  127 (313)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------------------~~~~~~~~~  127 (313)
                      ...............................+.....                                  +..+.+++.
T Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~d~  164 (342)
T d2ovrb2          85 ETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDP  164 (342)
T ss_dssp             TTTEEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEECSSCEEEEETTSCEEEEEG
T ss_pred             ccccceecccccceeEeeeecccccccccccceeEEEeecccccceeeeecccccceeeccccceeeeecCCCeEEEeec
Confidence            8776554433222111111111122221111111000                                  000001100


Q ss_pred             eeCCCCCCCceEEEecCCCCceEEEEEccCCCEEEEeeCCCeEEEEECCCCceeeecccccCceeceEEEEECCCCCEEE
Q 021399          128 ARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFL  207 (313)
Q Consensus       128 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~t~~~d~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~  207 (313)
                            .....+..+.+|...+..  +.+++.++++++.|+.|++||+..++++....   +|...+.+++++  +++|+
T Consensus       165 ------~~~~~~~~~~~~~~~~~~--~~~~~~~l~s~~~dg~i~~~d~~~~~~~~~~~---~~~~~v~~~~~~--~~~l~  231 (342)
T d2ovrb2         165 ------ETETCLHTLQGHTNRVYS--LQFDGIHVVSGSLDTSIRVWDVETGNCIHTLT---GHQSLTSGMELK--DNILV  231 (342)
T ss_dssp             ------GGTEEEEEECCCSSCEEE--EEECSSEEEEEETTSCEEEEETTTCCEEEEEC---CCCSCEEEEEEE--TTEEE
T ss_pred             ------ccceeeEEEcCccccccc--ccCCCCEEEEEeCCCeEEEeecccceeeeEec---ccccceeEEecC--CCEEE
Confidence                  112334455566655544  44567899999999999999999888776553   688889888876  46999


Q ss_pred             EeeCCCcEEEEECCCCcEEEEEec----CCceeEEEeccCCCEEEEcccccCceeEeeccCCCceeeeeeehhhhhhhcc
Q 021399          208 TGSLDKSAKLWDARTLELIKTYVT----ERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGG  283 (313)
Q Consensus       208 s~s~dg~i~iwd~~~~~~~~~~~~----~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  283 (313)
                      +++.|+.|++||+...+....+..    ...+.+++++  ++.++++ +.| +.+.+||.+.++....+..       ..
T Consensus       232 s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~s~-s~D-g~i~iwd~~tg~~i~~~~~-------~~  300 (342)
T d2ovrb2         232 SGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFN--KNFVITS-SDD-GTVKLWDLKTGEFIRNLVT-------LE  300 (342)
T ss_dssp             EEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEEC--SSEEEEE-ETT-SEEEEEETTTCCEEEEEEE-------CT
T ss_pred             EEcCCCEEEEEecccccccccccccceeeeceeecccC--CCeeEEE-cCC-CEEEEEECCCCCEEEEEec-------cc
Confidence            999999999999999888777753    2234555554  4555444 433 4455555544433211110       11


Q ss_pred             ccccccceeEEEECCCCCeeEE
Q 021399          284 VKGHFGPINALAFNPDGKRYGF  305 (313)
Q Consensus       284 ~~~h~~~V~~~~fspdgk~~~~  305 (313)
                      ..+|.++|++++|+||++.+|.
T Consensus       301 ~~~~~~~v~~v~~s~~~~~la~  322 (342)
T d2ovrb2         301 SGGSGGVVWRIRASNTKLVCAV  322 (342)
T ss_dssp             TGGGTCEEEEEEECSSEEEEEE
T ss_pred             CCCCCCCEEEEEECCCCCEEEE
Confidence            2468899999999999987764

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.1e-32  Score=233.58  Aligned_cols=273  Identities=20%  Similarity=0.309  Sum_probs=192.4

Q ss_pred             ccccccccce-eEEEEccCCCEEEEeeCCCCeEEEeCCCCcEEEEecCCCCceEEEEECCCCCeEEEeeCCCcEEEEECC
Q 021399            4 ILMKGHERPL-TYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVE   82 (313)
Q Consensus         4 ~~l~~h~~~v-~~~~fs~~g~~l~s~s~d~~i~iw~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~v~vWd~~   82 (313)
                      .+|+||.+.| .|++  +++++|+||+.|++|+|||+.+++.+.++++|.+.|++++|+|+ ++|+||+.|++|++|++.
T Consensus         6 ~tL~GH~~~vitc~~--~~~~~l~tgs~Dg~i~vWd~~~~~~~~~l~~H~~~V~~l~~s~~-~~l~s~s~D~~i~iw~~~   82 (355)
T d1nexb2           6 TTLRGHMTSVITCLQ--FEDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHG-GILVSGSTDRTVRVWDIK   82 (355)
T ss_dssp             EEEECCSSSCEEEEE--EETTEEEEEETTTEEEEEETTTTEEEEEEECCSSCEEEEEEETT-TEEEEEETTCCEEEEETT
T ss_pred             EEECCcCCCcEEEEE--ECCCEEEEEeCCCeEEEEECCCCcEEEEEECCCCCEEEEEEcCC-CEEEEEeccccccccccc
Confidence            3799999986 5555  46889999999999999999999999999999999999999985 589999999999999999


Q ss_pred             CCeEEEEecCCCCe---eEEEeecCCeEE-EEECCCceeccccce-----------------------------------
Q 021399           83 TGAQLFTFNFDSPA---RSVDFAVGDKLA-VITTDPFMELNSAIH-----------------------------------  123 (313)
Q Consensus        83 ~~~~~~~~~~~~~~---~~~~~~~~~~~~-~~~~~~~~~~~~~~~-----------------------------------  123 (313)
                      ..+...........   ....+.++...+ ....+....++....                                   
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (355)
T d1nexb2          83 KGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMA  162 (355)
T ss_dssp             TTEEEEEECCCSSCEEEEEEEEETTEEEEEEEETTSEEEEEECCC-----------CCCEEESCTTTCTTEEEEEECCSS
T ss_pred             ccccccccccccccccccccccccccceeeeecCCCcEEEEEccCCceeccccccceeccceeccccccceeeeeeeccc
Confidence            88776554432211   112222332222 222222111100000                                   


Q ss_pred             -e-------eeeee--------CCCCCCCceEEEecCCCCceEEEEEccCCCEEEEeeCCCeEEEEECCCCceeeecccc
Q 021399          124 -V-------KRIAR--------DPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKE  187 (313)
Q Consensus       124 -~-------~~~~~--------~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~t~~~d~~i~lwd~~~~~~~~~~~~~  187 (313)
                       .       ..+..        .......+.+....++...+....++|.++.+++++.|+.|++||..++..+..+.  
T Consensus       163 ~v~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~--  240 (355)
T d1nexb2         163 SVRTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQ--  240 (355)
T ss_dssp             CEEEEEEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTCCEEEEEC--
T ss_pred             cccccccccceeeeecccceeeeeecccccceeeeeccccccccccccccceeeecccccceEEeeeccccccccccc--
Confidence             0       00000        00011234445556677788899999999999999999999999999988776653  


Q ss_pred             cCceeceEEEEECCCCCEEEEeeCCCcEEEEECCCCcEEEEEecCCceeEEEeccCCCEEEEcccccCceeEeeccCCCc
Q 021399          188 TGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGK  267 (313)
Q Consensus       188 ~~h~~~v~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~  267 (313)
                       +|...|.+++++  +++|++|+.||.|++||++++...............+++|++. ++++|+ |+            
T Consensus       241 -~h~~~v~~~~~~--~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~g~-d~------------  303 (355)
T d1nexb2         241 -GHTALVGLLRLS--DKFLVSAAADGSIRGWDANDYSRKFSYHHTNLSAITTFYVSDN-ILVSGS-EN------------  303 (355)
T ss_dssp             -CCSSCCCEEEEC--SSEEEEECTTSEEEEEETTTCCEEEEEECTTCCCCCEEEECSS-EEEEEE-TT------------
T ss_pred             -cccccccccccc--cceeeeeecccccccccccccceecccccCCceEEEEEcCCCC-EEEEEe-CC------------
Confidence             688999999986  4689999999999999999988766654443333344555554 455443 32            


Q ss_pred             eeeeeeehhhhhhhc-cccccccceeEEEECCC
Q 021399          268 FEAKFFDKILQEEIG-GVKGHFGPINALAFNPD  299 (313)
Q Consensus       268 ~~~~~~~~~~~~~~~-~~~~h~~~V~~~~fspd  299 (313)
                       .+++||..+++.+. .+.+|.++|++++|+|+
T Consensus       304 -~i~vwd~~tg~~~~~~~~~~~~~V~~v~~~~~  335 (355)
T d1nexb2         304 -QFNIYNLRSGKLVHANILKDADQIWSVNFKGK  335 (355)
T ss_dssp             -EEEEEETTTCCBCCSCTTTTCSEEEEEEEETT
T ss_pred             -EEEEEECCCCCEEEEEecCCCCCEEEEEEcCC
Confidence             24667776666654 46789999999999987

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=8.1e-32  Score=228.70  Aligned_cols=229  Identities=15%  Similarity=0.140  Sum_probs=190.1

Q ss_pred             ccccccceeEEEEccCCCEEEEeeCCCCeEEEeCCCC--cEEEEecCCCCceEEEEECCCCCeEEEeeCCCcEEEEECCC
Q 021399            6 MKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNG--ERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVET   83 (313)
Q Consensus         6 l~~h~~~v~~~~fs~~g~~l~s~s~d~~i~iw~~~~~--~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~v~vWd~~~   83 (313)
                      ..+|.+.|.+++|+|+|++|++|+.|+.|++||+...  +....+.+|...|.+++|+|++..+++++.|+.|++|++.+
T Consensus        93 ~~~h~~~I~~v~~s~dg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~~~~~  172 (337)
T d1gxra_          93 CLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHN  172 (337)
T ss_dssp             CSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTT
T ss_pred             ecCCCCcEEEEEEcCCCCEEEEeecccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            4689999999999999999999999999999998744  56678899999999999999999999999999999999999


Q ss_pred             CeEEEEec-CCCCeeEEEeecCCeEEEE-ECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEccCCCEE
Q 021399           84 GAQLFTFN-FDSPARSVDFAVGDKLAVI-TTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTI  161 (313)
Q Consensus        84 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i  161 (313)
                      ++...... +..++.++.+.+.+..++. ..+...      .++++.      .++.+. ...+.+.|.++.|+|+++.+
T Consensus       173 ~~~~~~~~~~~~~v~~l~~s~~~~~~~~~~~d~~v------~i~d~~------~~~~~~-~~~~~~~i~~l~~~~~~~~l  239 (337)
T d1gxra_         173 QTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTV------RSWDLR------EGRQLQ-QHDFTSQIFSLGYCPTGEWL  239 (337)
T ss_dssp             TEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEE------EEEETT------TTEEEE-EEECSSCEEEEEECTTSSEE
T ss_pred             ccccccccccccccccccccccccccccccccccc------cccccc------cceeec-ccccccceEEEEEccccccc
Confidence            88776654 4567888888876554444 333322      222221      122232 23467889999999999999


Q ss_pred             EEeeCCCeEEEEECCCCceeeecccccCceeceEEEEECCCCCEEEEeeCCCcEEEEECCCCcEEEEEecCCceeEEEec
Q 021399          162 ISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTERPVNAVTMS  241 (313)
Q Consensus       162 ~t~~~d~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~  241 (313)
                      ++++.|+.|++||+.++.....    ..|...|++++|+|++++|++++.||.|++||+++++++..+.+...+.+++|+
T Consensus       240 ~~~~~d~~i~i~d~~~~~~~~~----~~~~~~i~~v~~s~~g~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~v~~~~~s  315 (337)
T d1gxra_         240 AVGMESSNVEVLHVNKPDKYQL----HLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSKESSSVLSCDIS  315 (337)
T ss_dssp             EEEETTSCEEEEETTSSCEEEE----CCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEEEEEEC
T ss_pred             ceeccccccccccccccccccc----cccccccceEEECCCCCEEEEEeCCCeEEEEECCCCCEEEEccCCCCEEEEEEe
Confidence            9999999999999998876543    258889999999999999999999999999999999999998888899999999


Q ss_pred             cCCCEEEEcc
Q 021399          242 PLLDHVVLGG  251 (313)
Q Consensus       242 p~~~~~~~~~  251 (313)
                      |++..+++++
T Consensus       316 ~d~~~l~t~s  325 (337)
T d1gxra_         316 VDDKYIVTGS  325 (337)
T ss_dssp             TTSCEEEEEE
T ss_pred             CCCCEEEEEe
Confidence            9998877654

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=5.3e-31  Score=226.64  Aligned_cols=212  Identities=18%  Similarity=0.183  Sum_probs=168.5

Q ss_pred             ccccccccceeEEEEccCCCEEEEeeCCCCeEEEeCCCCcE--EEEecCCCCceEEEEECCCCCeEEEeeCCCcEEEEEC
Q 021399            4 ILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGER--LGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNV   81 (313)
Q Consensus         4 ~~l~~h~~~v~~~~fs~~g~~l~s~s~d~~i~iw~~~~~~~--~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~v~vWd~   81 (313)
                      ..|++|.++|.+++|+|++++|++|+.|+.|+|||+.+++.  ...+.+|...|.+++|+|+++.|++++.|+++++|++
T Consensus        45 ~~l~gH~~~V~~l~fsp~~~~l~s~s~D~~i~vWd~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~l~~~s~d~~i~i~~~  124 (371)
T d1k8kc_          45 HELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYF  124 (371)
T ss_dssp             EEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTEEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEE
T ss_pred             EEecCCCCCEEEEEECCCCCEEEEEECCCeEEEEeecccccccccccccccccccccccccccccceeecccCcceeeee
Confidence            36789999999999999999999999999999999987764  3456789999999999999999999999999999997


Q ss_pred             CCCeEEEEecCCCCeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEccCCCEE
Q 021399           82 ETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTI  161 (313)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i  161 (313)
                      +.......                                                .......|...|.++.|+|++++|
T Consensus       125 ~~~~~~~~------------------------------------------------~~~~~~~~~~~v~~v~~~p~~~~l  156 (371)
T d1k8kc_         125 EQENDWWV------------------------------------------------CKHIKKPIRSTVLSLDWHPNSVLL  156 (371)
T ss_dssp             ETTTTEEE------------------------------------------------EEEECTTCCSCEEEEEECTTSSEE
T ss_pred             eccccccc------------------------------------------------ccccccccccccccccccccccce
Confidence            65321110                                                011224567789999999999999


Q ss_pred             EEeeCCCeEEEEECCCCceee---------------ecccccCceeceEEEEECCCCCEEEEeeCCCcEEEEECCCCcEE
Q 021399          162 ISAGEDAIVRIWDTETGKLLK---------------ESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELI  226 (313)
Q Consensus       162 ~t~~~d~~i~lwd~~~~~~~~---------------~~~~~~~h~~~v~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~  226 (313)
                      ++|+.|+.|++||........               ......+|...+.+++|+|++++|++++.|+.|++||+++++++
T Consensus       157 ~s~s~D~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~  236 (371)
T d1k8kc_         157 AAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAV  236 (371)
T ss_dssp             EEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGTTEE
T ss_pred             eccccCcEEEEEeeccCccccccccccccccccceeeeeeccCccCcEEEEEeecccccccccccCCcceEEeeecccce
Confidence            999999999999976532110               01112457888999999999999999999999999999999998


Q ss_pred             EEEec-CCceeEEEeccCCCEEEEcccccCceeEeeccC
Q 021399          227 KTYVT-ERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHR  264 (313)
Q Consensus       227 ~~~~~-~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~  264 (313)
                      ..+.. ..++.+++|+|++.. +++|.++...++.++..
T Consensus       237 ~~~~~~~~~v~s~~fs~d~~~-la~g~d~~~~~~~~~~~  274 (371)
T d1k8kc_         237 ATLASETLPLLAVTFITESSL-VAAGHDCFPVLFTYDSA  274 (371)
T ss_dssp             EEEECSSCCEEEEEEEETTEE-EEEETTSSCEEEEEETT
T ss_pred             eeeecccccceeeeecCCCCE-EEEEcCCceEEEEeeCC
Confidence            88764 557999999998754 44444444445555543

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=5.4e-30  Score=220.67  Aligned_cols=240  Identities=19%  Similarity=0.323  Sum_probs=177.8

Q ss_pred             ccccccceeEEEEccCCCEEEEeeCCCCeEEEeCCCCcEEEEecCCCCceEEEEECCCCCeEEEeeCCCcEEEEECCCCe
Q 021399            6 MKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGA   85 (313)
Q Consensus         6 l~~h~~~v~~~~fs~~g~~l~s~s~d~~i~iw~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~v~vWd~~~~~   85 (313)
                      ..+|...|.+++|+|+|++|++|+.|+.|++|+...++.+..+.+|...|.++++++++..+++++.++.+++||..+..
T Consensus       117 ~~~~~~~V~~l~~s~~~~~l~s~~~dg~v~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~  196 (388)
T d1erja_         117 SPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQ  196 (388)
T ss_dssp             --CCCCBEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTE
T ss_pred             ccCCCCCEEEEEECCCCCcceecccccccccccccccccccccccccccccccccccccccccccccceeeeeeeccccc
Confidence            45688889999999999999999999999999999999999999999999999999999999999999999999999988


Q ss_pred             EEEEecCCCCeeEEEeec-CCe-EEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEccCCCEEEE
Q 021399           86 QLFTFNFDSPARSVDFAV-GDK-LAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIIS  163 (313)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~t  163 (313)
                      .............+.+.+ ++. ++.+..+....+........+..-     ........+|.+.|.++.|+|++++|++
T Consensus       197 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~-----~~~~~~~~~h~~~v~~l~~s~~~~~l~s  271 (388)
T d1erja_         197 CSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERL-----DSENESGTGHKDSVYSVVFTRDGQSVVS  271 (388)
T ss_dssp             EEEEEECSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEE-----C------CCCSSCEEEEEECTTSSEEEE
T ss_pred             cccccccccccccccccCCCCCeEEEEcCCCeEEEeecccCccceee-----ccccccccCCCCCEEEEEECCCCCEEEE
Confidence            777666656666666655 333 333444433322111100000000     0111233568889999999999999999


Q ss_pred             eeCCCeEEEEECCCCceeeec---------ccccCceeceEEEEECCCCCEEEEeeCCCcEEEEECCCCcEEEEEe-cCC
Q 021399          164 AGEDAIVRIWDTETGKLLKES---------DKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYV-TER  233 (313)
Q Consensus       164 ~~~d~~i~lwd~~~~~~~~~~---------~~~~~h~~~v~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~-~~~  233 (313)
                      ++.|+.|++||+.++......         .....|...|++++|+|++++|++|+.||.|++||+++++++.++. +..
T Consensus       272 ~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~l~~H~~  351 (388)
T d1erja_         272 GSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRN  351 (388)
T ss_dssp             EETTSEEEEEEC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEEECCSS
T ss_pred             EECCCcEEEEeccCCccccccccccccceeeecccccceEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEEeCCCC
Confidence            999999999998765432211         1123577889999999999999999999999999999999999886 456


Q ss_pred             ceeEEEe------ccCCCEEEEc
Q 021399          234 PVNAVTM------SPLLDHVVLG  250 (313)
Q Consensus       234 ~~~~~~~------~p~~~~~~~~  250 (313)
                      .+.++++      +|++..++++
T Consensus       352 ~V~~~~~~~~~~~spd~~~l~s~  374 (388)
T d1erja_         352 SVISVAVANGSSLGPEYNVFATG  374 (388)
T ss_dssp             CEEEEEECSSCTTCTTCEEEEEE
T ss_pred             CEEEEEEecCcccCCCCCEEEEE
Confidence            7777764      5666655544

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.98  E-value=6.2e-29  Score=204.54  Aligned_cols=263  Identities=23%  Similarity=0.337  Sum_probs=185.7

Q ss_pred             ccccccccceeEEEEccCCCEEEEeeCCCCeEEEeCCCCcEEEEecCCCCceEEEEECCCCCeEEEeeCCCcEEEEECCC
Q 021399            4 ILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVET   83 (313)
Q Consensus         4 ~~l~~h~~~v~~~~fs~~g~~l~s~s~d~~i~iw~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~v~vWd~~~   83 (313)
                      ..+.+|.+.|+|++  +||++|+||+.||+|+|||+++++++.++++|.++|++++|  ++++|+||+.|++|++|++..
T Consensus         9 ~~~~~~~~~V~c~~--~d~~~l~sgs~Dg~i~vWd~~~~~~~~~l~~H~~~V~~v~~--~~~~l~s~s~D~~i~~~~~~~   84 (293)
T d1p22a2           9 HCRSETSKGVYCLQ--YDDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNT   84 (293)
T ss_dssp             ECCCSSCCCEEEEE--CCSSEEEEEESSSCEEEEESSSCCEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESSS
T ss_pred             eccCCCCCCEEEEE--EcCCEEEEEeCCCeEEEEECCCCcEEEEEecCCCCEeeeec--ccceeeccccccccccccccc
Confidence            35567888999875  47999999999999999999999999999999999999887  567999999999999999998


Q ss_pred             CeEEEEecCCCCeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEccCCCEEEE
Q 021399           84 GAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIIS  163 (313)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~t  163 (313)
                      +......................++....+....      +++..   .............|...+....+.+  ..+++
T Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~---~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~~  153 (293)
T d1p22a2          85 GEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIA------VWDMA---SPTDITLRRVLVGHRAAVNVVDFDD--KYIVS  153 (293)
T ss_dssp             CCEEEEECCCCSCEEEEECCTTEEEEEETTSCEE------EEECS---SSSCCEEEEEECCCSSCEEEEEEET--TEEEE
T ss_pred             ccccccccccccccccccccccceeeccccccee------Eeecc---ccccccccccccccccccccceecc--ccccc
Confidence            8776665544433333333444444443332221      12111   1111233445566777776666554  57889


Q ss_pred             eeCCCeEEEEECCCCceeeecccccCceeceEEEEECCCCCEEEEeeCCCcEEEEECCCCcEEEEEecC-CceeEEEecc
Q 021399          164 AGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTE-RPVNAVTMSP  242 (313)
Q Consensus       164 ~~~d~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~-~~~~~~~~~p  242 (313)
                      ++.|+.|++||..+++.+..+.   ++...+..+.++  +.++++++.||+|++||+++..++..+... ..+..  +.+
T Consensus       154 ~s~d~~i~~~d~~~~~~~~~~~---~~~~~v~~~~~~--~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~--~~~  226 (293)
T d1p22a2         154 ASGDRTIKVWNTSTCEFVRTLN---GHKRGIACLQYR--DRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRC--IRF  226 (293)
T ss_dssp             EETTSEEEEEETTTCCEEEEEE---CCSSCEEEEEEE--TTEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEE--EEC
T ss_pred             ccCCCceeeecCCCCcEEEEEc---ccccccccccCC--CCeEEEecCCCEEEEEecccceeeeeecccceeeee--ccc
Confidence            9999999999999988776653   566778877765  568999999999999999999998877643 33443  445


Q ss_pred             CCCEEEEcccccCceeEeeccCCCceeeeeeehhh---------hhhhccccccccceeEEEECCCCCeeE
Q 021399          243 LLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKIL---------QEEIGGVKGHFGPINALAFNPDGKRYG  304 (313)
Q Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~h~~~V~~~~fspdgk~~~  304 (313)
                      +...++++ +.|+ .+            ++||...         ...+..+.+|.++|++++|+  +++|+
T Consensus       227 ~~~~l~sg-~~dg-~i------------~iwd~~~~~~~~~~~~~~~~~~~~~H~~~V~~v~~d--~~~l~  281 (293)
T d1p22a2         227 DNKRIVSG-AYDG-KI------------KVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQFD--EFQIV  281 (293)
T ss_dssp             CSSEEEEE-ETTS-CE------------EEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEEC--SSCEE
T ss_pred             cceEEEEE-cCCC-EE------------EEEECCCCccccccCCceeeEEecCCCCCEEEEEEc--CCEEE
Confidence            55555544 3332 23            4455432         22345678999999999995  45554

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.97  E-value=2.8e-30  Score=213.80  Aligned_cols=253  Identities=15%  Similarity=0.173  Sum_probs=179.0

Q ss_pred             ccccccccceeEEEEccCCCEEEEeeCCCCeEEEeCCCCcEEEEecCCCCceEEEEECCCCCeEEEeeCCCcEEEEECCC
Q 021399            4 ILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVET   83 (313)
Q Consensus         4 ~~l~~h~~~v~~~~fs~~g~~l~s~s~d~~i~iw~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~v~vWd~~~   83 (313)
                      ++|+||.++|++++|+|    |+||+.||+|++||..++     .++|...|.+++++++ ..+++++.|+++++|++..
T Consensus         7 ~~l~gH~~~I~~l~~s~----l~sgs~Dg~v~~Wd~~~~-----~~~h~~~V~~~~~~~~-~~~~s~s~D~~v~~w~~~~   76 (287)
T d1pgua2           7 KTISGHNKGITALTVNP----LISGSYDGRIMEWSSSSM-----HQDHSNLIVSLDNSKA-QEYSSISWDDTLKVNGITK   76 (287)
T ss_dssp             EEECCCSSCEEEEETTT----TEEEETTSCEEETTTTEE-----ECCCCSCEEEEECCST-TCCEEEETTTEEEETTEEE
T ss_pred             EEECCCCCceEEEEECc----EEEEeCCCeEEEEECCCC-----CCCCCCCEEEEEecCC-CeEEEEeeccccccccccc
Confidence            38999999999999987    999999999999998653     4689999999999875 4689999999999999754


Q ss_pred             CeEEEEecCCCCeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEccCCCEEEE
Q 021399           84 GAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIIS  163 (313)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~t  163 (313)
                      .      .....+..+.+.++...++...+.......            ...+..+..+..+ ..  ...+++.+..+++
T Consensus        77 ~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~-~~--~~~~~~~~~~~~v  135 (287)
T d1pgua2          77 H------EFGSQPKVASANNDGFTAVLTNDDDLLILQ------------SFTGDIIKSVRLN-SP--GSAVSLSQNYVAV  135 (287)
T ss_dssp             E------ECSSCEEEEEECSSSEEEEEETTSEEEEEE------------TTTCCEEEEEECS-SC--EEEEEECSSEEEE
T ss_pred             c------ccccceeeeeeccCCceEEEeecccceeee------------ccceeeeeecccc-ce--eeeeeccCcceee
Confidence            2      233345556666666665554433211100            0112222222222 22  2456677788888


Q ss_pred             eeCCC-eEEEEECCCCceeeecccccCceeceEEEEECCCCCEEEEeeCCCcEEEEECCCCcEEEEE--ecCCceeEEEe
Q 021399          164 AGEDA-IVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTY--VTERPVNAVTM  240 (313)
Q Consensus       164 ~~~d~-~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~--~~~~~~~~~~~  240 (313)
                      ++.++ .+++|++...+......  ..|...+++++|+|++.+|++|+.||.|++||+.+++.....  .+..++.+++|
T Consensus       136 ~~~~~~~v~~~~~~~~~~~~~~~--~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~~~~  213 (287)
T d1pgua2         136 GLEEGNTIQVFKLSDLEVSFDLK--TPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISW  213 (287)
T ss_dssp             EETTTSCEEEEETTEEEEEEECS--SCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEECCSCCCSSCEEEEEE
T ss_pred             eccccceeeeeeccccceeeeee--eccCCceeEEEeccCccccccccccccccceeecccccccccccccccccceeee
Confidence            77765 79999987655444332  347788999999999999999999999999999998876543  24567999999


Q ss_pred             ccCCCE---------EEEcccccCceeEeeccCCCceeeeeeehhh-hhhhccccccccceeEEEECCCCCe
Q 021399          241 SPLLDH---------VVLGGGQDASAVTTTDHRAGKFEAKFFDKIL-QEEIGGVKGHFGPINALAFNPDGKR  302 (313)
Q Consensus       241 ~p~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~h~~~V~~~~fspdgk~  302 (313)
                      +|.+..         ++++|+.|+             .+++||... .+.+..+.+|.+.|++++|+|+++.
T Consensus       214 ~p~~~~~~~~~~~~~~l~sgs~D~-------------~i~iw~~~~~~~~~~~~~~h~~~V~~v~~~~~~~l  272 (287)
T d1pgua2         214 KPAEKGANEEEIEEDLVATGSLDT-------------NIFIYSVKRPMKIIKALNAHKDGVNNLLWETPSTL  272 (287)
T ss_dssp             CCCC------CCSCCEEEEEETTS-------------CEEEEESSCTTCCEEETTSSTTCEEEEEEEETTEE
T ss_pred             cccccccccccCCCCeeEeecCCC-------------eEEEEECCCCCeEEEEeCCCCCCeEEEEECCCCEE
Confidence            986543         233333332             245666533 4445667799999999999999864

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.97  E-value=9e-30  Score=220.58  Aligned_cols=277  Identities=14%  Similarity=0.143  Sum_probs=185.1

Q ss_pred             cccccccceeEEEEccCCCEEEEeeCCCCeEEEeCCCCcE------EEEecCCCCceEEEE------ECC-CCCeEEEee
Q 021399            5 LMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGER------LGTYRGHNGAVWCCD------VSR-DSMTLITGS   71 (313)
Q Consensus         5 ~l~~h~~~v~~~~fs~~g~~l~s~s~d~~i~iw~~~~~~~------~~~~~~H~~~V~~~~------~~~-~~~~l~s~s   71 (313)
                      ..++|...|+++++++  ++|+|+|.|+.|+|||..+...      ......|...+..+.      .+. ++.++++++
T Consensus         9 ~~~~H~~~I~~v~~~~--~~l~S~S~D~~iriWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~   86 (393)
T d1sq9a_           9 AGKAHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATTS   86 (393)
T ss_dssp             ESSCSSSCEEEEEECS--SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEEEE
T ss_pred             cCCcccCccEEEEEeC--CEEEEEECCCeEEEEECCCCCCCcccceeEeeeeccCCceEeeeEeeeccCCCCCcEEEEEe
Confidence            5689999999999864  6999999999999999765431      223334555443222      111 234788999


Q ss_pred             CCCcEEEEECCCCeE---EE--Eec------CCCCeeEEEeecCC------eEEEEECCCceeccccceeeeeeeCCC--
Q 021399           72 ADQTAKLWNVETGAQ---LF--TFN------FDSPARSVDFAVGD------KLAVITTDPFMELNSAIHVKRIARDPA--  132 (313)
Q Consensus        72 ~D~~v~vWd~~~~~~---~~--~~~------~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~--  132 (313)
                      .||.|++|++.....   ..  ...      .......+.+.+..      .++....+.      .+.+|++.....  
T Consensus        87 ~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg------~i~vw~~~~~~~~~  160 (393)
T d1sq9a_          87 FSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKG------TTYIWKFHPFADES  160 (393)
T ss_dssp             TTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTS------CEEEEEEESSSSHH
T ss_pred             CCCcEEEEEccCCCceeeeeccccceeeeccCCCceEEEEEecCCCcccccEEEEEcCCC------cEEEEEeecCCccc
Confidence            999999999743321   11  111      11223333443321      222222222      222333221100  


Q ss_pred             -----CCCC--ce---EEEecCCCCceEEEEEccCCCEEEEeeCCCeEEEEECCCCceeeecc---cccCceeceEEEEE
Q 021399          133 -----DQGG--ES---VLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESD---KETGHKKTITSLAK  199 (313)
Q Consensus       133 -----~~~~--~~---~~~~~~~~~~i~~~~~~~~~~~i~t~~~d~~i~lwd~~~~~~~~~~~---~~~~h~~~v~~~~~  199 (313)
                           ....  ..   ......+...+.++.|+|++ ++++|+.|+.|+|||+.+++++..+.   ...+|...|++++|
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg-~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~l~~h~~~V~~l~~  239 (393)
T d1sq9a_         161 NSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKF  239 (393)
T ss_dssp             HHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEE
T ss_pred             ceeeeeeccceecccceecccCCCCcEEEEEECCCC-EEEEEeCCCcEEEEeecccccccccccccccccccceEEEccc
Confidence                 0000  00   01112344567889999987 78999999999999999887765432   23578999999999


Q ss_pred             CCCCCEEEEeeCCCc---EEEEECCCCcEEEEEe--------------cCCceeEEEeccCCCEEEEcccccCceeEeec
Q 021399          200 AADGSHFLTGSLDKS---AKLWDARTLELIKTYV--------------TERPVNAVTMSPLLDHVVLGGGQDASAVTTTD  262 (313)
Q Consensus       200 s~~~~~l~s~s~dg~---i~iwd~~~~~~~~~~~--------------~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~  262 (313)
                      +|+|.+|++|+.|++   |++||+++++++.++.              |...|.+++|+|+++.++.+ +.|.       
T Consensus       240 spdg~~l~sgs~D~t~~~i~lwd~~~g~~~~~l~~~~~~~~~~~~~~gH~~~V~~l~fspd~~~l~S~-s~D~-------  311 (393)
T d1sq9a_         240 SPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSA-GWDG-------  311 (393)
T ss_dssp             CSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEE-ETTS-------
T ss_pred             ccccceeeeecCCCCcceeeecccccceeeeeeccccccccceeeeecccCceeeeccCCCCCeeEEE-CCCC-------
Confidence            999999999999975   8999999999888764              34568999999999876654 4333       


Q ss_pred             cCCCceeeeeeehhhhhhhcccccccccee----EEEECCCCCeeE
Q 021399          263 HRAGKFEAKFFDKILQEEIGGVKGHFGPIN----ALAFNPDGKRYG  304 (313)
Q Consensus       263 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~----~~~fspdgk~~~  304 (313)
                            .+++||..+++++..+.+|.+.|.    .++|+|+|+.++
T Consensus       312 ------~v~vWd~~~g~~~~~l~gH~~~v~~~~~~~~~~~~~~~~~  351 (393)
T d1sq9a_         312 ------KLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLA  351 (393)
T ss_dssp             ------EEEEEETTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCS
T ss_pred             ------EEEEEECCCCCEEEEECCcCCcccCCccEEEECCCCCEEE
Confidence                  467888888888889999998886    588999987744

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.97  E-value=9.2e-29  Score=208.80  Aligned_cols=263  Identities=13%  Similarity=0.137  Sum_probs=180.8

Q ss_pred             ceeEEEEccCCCEEEEeeCCCC-eEEEeCCCC--cEEEEecCCC-CceEEEEECC--CCCeEEEeeCCCcEEEEECCCCe
Q 021399           12 PLTYLKYNKDGDLLFSCAKDHT-PTVWFADNG--ERLGTYRGHN-GAVWCCDVSR--DSMTLITGSADQTAKLWNVETGA   85 (313)
Q Consensus        12 ~v~~~~fs~~g~~l~s~s~d~~-i~iw~~~~~--~~~~~~~~H~-~~V~~~~~~~--~~~~l~s~s~D~~v~vWd~~~~~   85 (313)
                      .+.+++|+|+|+.|+.++.+.. |+.|+....  ..+..+.+|. ..|++++|+|  ++++++||+.||+|+|||+..++
T Consensus        19 ~~t~l~~~~~~~~la~~~~~~~~i~~~~~~~~~~~~~~~~~gh~~~~v~~v~fsP~~~g~~lasgs~Dg~i~iWd~~~~~   98 (325)
T d1pgua1          19 FTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDK   98 (325)
T ss_dssp             CCCCCEEETTTTEEEEEETTEEEEEECCSSCCSSCSEEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEG
T ss_pred             CeEEEEECCCCCEEEEEeCCCEEEEEEeCCCCCccceEEEeCCCCCCEEEEEEeeCCCCCEEEEEeCCCCEEEeeecCCc
Confidence            3578999999999998876543 566665443  3366788885 6799999998  56799999999999999986543


Q ss_pred             EE--------EE-ecCCCCeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEcc
Q 021399           86 QL--------FT-FNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGP  156 (313)
Q Consensus        86 ~~--------~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~  156 (313)
                      ..        .. .....++..+.|.++++.++......   ......+..      ..+..+..+.+|...+.++.|+|
T Consensus        99 ~~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~~~---~~~~~~~~~------~~~~~~~~~~~h~~~v~~~~~~~  169 (325)
T d1pgua1          99 ESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGR---DNFGVFISW------DSGNSLGEVSGHSQRINACHLKQ  169 (325)
T ss_dssp             GGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCS---SCSEEEEET------TTCCEEEECCSCSSCEEEEEECS
T ss_pred             ceeeeecccccccccccCcEEEEEECCCCCccceeeccc---cceEEEEee------cccccceeeeecccccccccccc
Confidence            11        11 12456788889988766554432210   001111111      12456677888999999999999


Q ss_pred             CCCE-EEEeeCCCeEEEEECCCCceeeecccccCceeceEEEEECCC-CCEEEEeeCCCcEEEEECCCCcEEEEEec-CC
Q 021399          157 LNRT-IISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAAD-GSHFLTGSLDKSAKLWDARTLELIKTYVT-ER  233 (313)
Q Consensus       157 ~~~~-i~t~~~d~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~-~~~l~s~s~dg~i~iwd~~~~~~~~~~~~-~~  233 (313)
                      .++. +++++.|+.+++||....+..........|...|.+++|+|+ +.+|++++.|+.|++||+++++++.++.. ..
T Consensus       170 ~~~~~~~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~v~~v~~~pd~~~~l~s~~~d~~i~iwd~~~~~~~~~l~~~~~  249 (325)
T d1pgua1         170 SRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQE  249 (325)
T ss_dssp             SSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEEECCBTTB
T ss_pred             cccceEEEeecccccccccccccccceecccccCCCCccEEeeeccccceeccccccccceeeeeecccccccccccccc
Confidence            9875 678999999999999887766655555678889999999996 68899999999999999999999988863 33


Q ss_pred             ceeEEEec---cCCCEEEEcccccCceeEeeccCCCceeeeeeehhhhhhhccccccc--cceeEEEEC
Q 021399          234 PVNAVTMS---PLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHF--GPINALAFN  297 (313)
Q Consensus       234 ~~~~~~~~---p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~--~~V~~~~fs  297 (313)
                      ++..+.|+   |++..+++++ .|. .            +++||..+++.+..+..|.  ..+..+++.
T Consensus       250 ~v~~~~~s~~~~dg~~l~s~s-~D~-~------------i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~  304 (325)
T d1pgua1         250 PVQGGIFALSWLDSQKFATVG-ADA-T------------IRVWDVTTSKCVQKWTLDKQQLGNQQVGVV  304 (325)
T ss_dssp             CCCSCEEEEEESSSSEEEEEE-TTS-E------------EEEEETTTTEEEEEEECCTTCGGGCEEEEE
T ss_pred             ccccceeeeeccCCCEEEEEe-CCC-e------------EEEEECCCCCEEEEEEecCCcccCeEEEEE
Confidence            44444443   5566665543 332 2            4456555555544443333  333444443

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.97  E-value=1.9e-29  Score=211.79  Aligned_cols=279  Identities=13%  Similarity=0.101  Sum_probs=181.2

Q ss_pred             cccccccceeEEEEccCCCEEEEeeCCCCeEEEeCCCCcE---EEEecCCCCceEEEEECCCC-CeEEEeeCCCcEEEEE
Q 021399            5 LMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGER---LGTYRGHNGAVWCCDVSRDS-MTLITGSADQTAKLWN   80 (313)
Q Consensus         5 ~l~~h~~~v~~~~fs~~g~~l~s~s~d~~i~iw~~~~~~~---~~~~~~H~~~V~~~~~~~~~-~~l~s~s~D~~v~vWd   80 (313)
                      ++++|++.|++|+|+|++++|++||.|++|+|||++++..   +....+|.++|.+++|+|++ .++++|+.|++|++|+
T Consensus         6 ~~~~h~d~I~~l~fsp~~~~L~s~s~Dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~f~~~~~~~l~sg~~d~~v~~w~   85 (342)
T d1yfqa_           6 IEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVD   85 (342)
T ss_dssp             CSSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEEEC
T ss_pred             cCCCCCCCEEEEEEeCCCCEEEEEECCCeEEEEEccCCCcceEEEEecCCCCCEEEEEEeCCCCCEEEEcccccceeeee
Confidence            6899999999999999999999999999999999876643   33344799999999999864 5899999999999999


Q ss_pred             CCCCeEEEEecCC-CC-eeEEEeec-CCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCC--CCceEEEEEc
Q 021399           81 VETGAQLFTFNFD-SP-ARSVDFAV-GDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGP--QGRINRAVWG  155 (313)
Q Consensus        81 ~~~~~~~~~~~~~-~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~i~~~~~~  155 (313)
                      +............ .. .....+.+ ...++....+....+      +++....  ...........+  ........+.
T Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------wd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~  157 (342)
T d1yfqa_          86 LIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDGLIEV------IDPRNYG--DGVIAVKNLNSNNTKVKNKIFTMD  157 (342)
T ss_dssp             SSSSSSEEECBSCCCCSCEEEEEEETTTEEEEEETTSEEEE------ECHHHHT--TBCEEEEESCSSSSSSCCCEEEEE
T ss_pred             cccccccccccccccccccccccccccccccccccccccce------eeccccc--cceeeecccccccccceeeeeeee
Confidence            9877655544332 22 22222333 334444443332222      2111000  001111111111  1223445567


Q ss_pred             cCCCEEEEeeCCCeEEEEECCCCceeeecccccCceeceEEEE-ECCCCCEEEEeeCCCcEEEEECCCCcEE--------
Q 021399          156 PLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLA-KAADGSHFLTGSLDKSAKLWDARTLELI--------  226 (313)
Q Consensus       156 ~~~~~i~t~~~d~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~-~s~~~~~l~s~s~dg~i~iwd~~~~~~~--------  226 (313)
                      +.+..+++++.|+.|++||+..............+.....+.+ +..++..+++++.||.+.+|+.......        
T Consensus       158 ~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~v~~~~~~~~~~~~~~~~~  237 (342)
T d1yfqa_         158 TNSSRLIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFA  237 (342)
T ss_dssp             ECSSEEEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEE
T ss_pred             ccCCceeeecCCCcEEEEecccCcccceeeeecccccceeeeEeecCCCCEEEeecCCCeEEEEEecCCcceeeccccce
Confidence            7788999999999999999876654332222223344455544 4556788999999999999987643211        


Q ss_pred             -EEE-------ecCCceeEEEeccCCCEEEEcccccCceeEeeccCCCceeeeeeehhhhhhhccccccccceeEEEECC
Q 021399          227 -KTY-------VTERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNP  298 (313)
Q Consensus       227 -~~~-------~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~fsp  298 (313)
                       ...       .+...+++++|+|+++.+++++ .|+             .+++||..+++.+..+..+ .++..++|+|
T Consensus       238 ~~~~~~~~~~~~~~~~v~~l~~sp~~~~lasg~-~Dg-------------~v~vWD~~~~~~l~~~~~~-~~~~~~~~s~  302 (342)
T d1yfqa_         238 FRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAG-SDG-------------IISCWNLQTRKKIKNFAKF-NEDSVVKIAC  302 (342)
T ss_dssp             EECCCCCTTCCSSCCCEEEEEECTTTCCEEEEE-TTS-------------CEEEEETTTTEEEEECCCC-SSSEEEEEEE
T ss_pred             eeeeeeccCCCcccccceeEEecCCccEEEEEC-CCC-------------EEEEEECCCCcEEEEecCC-CCCEEEEEEe
Confidence             111       1123578999999998876654 333             2466777766666666432 3455678889


Q ss_pred             CCCeeEEE
Q 021399          299 DGKRYGFL  306 (313)
Q Consensus       299 dgk~~~~~  306 (313)
                      +|+.+++-
T Consensus       303 ~~~~l~~a  310 (342)
T d1yfqa_         303 SDNILCLA  310 (342)
T ss_dssp             CSSEEEEE
T ss_pred             CCCEEEEE
Confidence            99988763

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.97  E-value=7.6e-28  Score=200.01  Aligned_cols=233  Identities=24%  Similarity=0.390  Sum_probs=193.1

Q ss_pred             ccccccccceeEEEEccCCCEEEEeeCCCCeEEEeCCCCcEEEEecCCCCceEEEEECCCCCeEEEeeCCCcEEEEECCC
Q 021399            4 ILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVET   83 (313)
Q Consensus         4 ~~l~~h~~~v~~~~fs~~g~~l~s~s~d~~i~iw~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~v~vWd~~~   83 (313)
                      ..+.+|...|.+++|+|++.++++++.++.+.+|+....+....+.+|...+.++.++|+++.+++++.|+.+++||+++
T Consensus        53 ~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~  132 (317)
T d1vyhc1          53 RTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQT  132 (317)
T ss_dssp             EEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEETTSSCEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTT
T ss_pred             EEEeCCCCcEEEEeeecccccccccccccccccccccccccccccccccccceeeeccCCCceEEeeccCcceeEeeccc
Confidence            36789999999999999999999999999999999999999889999999999999999999999999999999999999


Q ss_pred             CeEEEEec-CCCCeeEEEeecCCeEEEE-ECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEccC----
Q 021399           84 GAQLFTFN-FDSPARSVDFAVGDKLAVI-TTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPL----  157 (313)
Q Consensus        84 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~----  157 (313)
                      ++....+. .......+.+.+++..++. ..+...      ..++.      ........+.+|...+..+.++|.    
T Consensus       133 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~v------~~~~~------~~~~~~~~~~~~~~~i~~~~~~~~~~~~  200 (317)
T d1vyhc1         133 GYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTV------RVWVV------ATKECKAELREHRHVVECISWAPESSYS  200 (317)
T ss_dssp             CCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCE------EEEET------TTCCEEEEECCCSSCEEEEEECCSCGGG
T ss_pred             ceeeeEEccCCCcceeeecccCCCEEEEEeCCCeE------EEEee------ccceeeEEEecCCCCceEEEEeeccccc
Confidence            88877665 3556778888886655544 333322      22211      123345556667777777777654    


Q ss_pred             ----------------CCEEEEeeCCCeEEEEECCCCceeeecccccCceeceEEEEECCCCCEEEEeeCCCcEEEEECC
Q 021399          158 ----------------NRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDAR  221 (313)
Q Consensus       158 ----------------~~~i~t~~~d~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~dg~i~iwd~~  221 (313)
                                      +..+++++.|+.|++||..+++++.++.   +|...|.+++++|++++|++|+.||.|++||++
T Consensus       201 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~---~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~  277 (317)
T d1vyhc1         201 SISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLV---GHDNWVRGVLFHSGGKFILSCADDKTLRVWDYK  277 (317)
T ss_dssp             GGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEEEEEE---CCSSCEEEEEECSSSSCEEEEETTTEEEEECCT
T ss_pred             eeeccccceeeeeccCCceeEeccCCCEEEEEECCCCcEEEEEe---CCCCCEEEEEECCCCCEEEEEECCCeEEEEECC
Confidence                            3468999999999999999998877654   688999999999999999999999999999999


Q ss_pred             CCcEEEEEe-cCCceeEEEeccCCCEEEEcc
Q 021399          222 TLELIKTYV-TERPVNAVTMSPLLDHVVLGG  251 (313)
Q Consensus       222 ~~~~~~~~~-~~~~~~~~~~~p~~~~~~~~~  251 (313)
                      +++++.++. +...|.+++|+|+++.+++++
T Consensus       278 ~~~~~~~~~~h~~~V~~~~~s~~~~~l~s~s  308 (317)
T d1vyhc1         278 NKRCMKTLNAHEHFVTSLDFHKTAPYVVTGS  308 (317)
T ss_dssp             TSCCCEEEECCSSCEEEEEECSSSSCEEEEE
T ss_pred             CCcEEEEEcCCCCCEEEEEEcCCCCEEEEEe
Confidence            999998886 467899999999998877654

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.97  E-value=1.6e-28  Score=207.36  Aligned_cols=234  Identities=14%  Similarity=0.189  Sum_probs=169.0

Q ss_pred             cccccc-cceeEEEEcc--CCCEEEEeeCCCCeEEEeCCCCcE--------EEEecCCCCceEEEEECCCCCeEEEee--
Q 021399            5 LMKGHE-RPLTYLKYNK--DGDLLFSCAKDHTPTVWFADNGER--------LGTYRGHNGAVWCCDVSRDSMTLITGS--   71 (313)
Q Consensus         5 ~l~~h~-~~v~~~~fs~--~g~~l~s~s~d~~i~iw~~~~~~~--------~~~~~~H~~~V~~~~~~~~~~~l~s~s--   71 (313)
                      .+.+|. ..|++++|+|  +|++|++|+.||+|+|||...++.        ...+..|.++|.+++|+++++.+++++  
T Consensus        57 ~~~gh~~~~v~~v~fsP~~~g~~lasgs~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~~  136 (325)
T d1pgua1          57 QFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEG  136 (325)
T ss_dssp             EECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECC
T ss_pred             EEeCCCCCCEEEEEEeeCCCCCEEEEEeCCCCEEEeeecCCcceeeeecccccccccccCcEEEEEECCCCCccceeecc
Confidence            456664 6799999998  578999999999999999875532        234567899999999999999887765  


Q ss_pred             CCCcEEEEECCCCeEEEEec-CCCCeeEEEeecCCeE--EEEECCCceeccccceeeeeeeCCCCCCCceE---EEecCC
Q 021399           72 ADQTAKLWNVETGAQLFTFN-FDSPARSVDFAVGDKL--AVITTDPFMELNSAIHVKRIARDPADQGGESV---LILKGP  145 (313)
Q Consensus        72 ~D~~v~vWd~~~~~~~~~~~-~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~  145 (313)
                      .|+.+++|+.++++.+..+. +...+.++.|.+....  +....+....+      ++..      ..+..   .....|
T Consensus       137 ~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~~------~d~~------~~~~~~~~~~~~~~  204 (325)
T d1pgua1         137 RDNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVF------YQGP------PFKFSASDRTHHKQ  204 (325)
T ss_dssp             SSCSEEEEETTTCCEEEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEE------EETT------TBEEEEEECSSSCT
T ss_pred             ccceEEEEeecccccceeeeecccccccccccccccceEEEeeccccccc------cccc------ccccceecccccCC
Confidence            47889999999988877765 4567888899886543  33333433222      2110      11111   123456


Q ss_pred             CCceEEEEEccC-CCEEEEeeCCCeEEEEECCCCceeeecccccCceece----EEEEECCCCCEEEEeeCCCcEEEEEC
Q 021399          146 QGRINRAVWGPL-NRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTI----TSLAKAADGSHFLTGSLDKSAKLWDA  220 (313)
Q Consensus       146 ~~~i~~~~~~~~-~~~i~t~~~d~~i~lwd~~~~~~~~~~~~~~~h~~~v----~~~~~s~~~~~l~s~s~dg~i~iwd~  220 (313)
                      ...|.+++|+|+ +.++++++.|+.|++||+++++.+..+.   +|...+    .++++ +++++|++++.|+.|+|||+
T Consensus       205 ~~~v~~v~~~pd~~~~l~s~~~d~~i~iwd~~~~~~~~~l~---~~~~~v~~~~~s~~~-~dg~~l~s~s~D~~i~iwd~  280 (325)
T d1pgua1         205 GSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIE---DDQEPVQGGIFALSW-LDSQKFATVGADATIRVWDV  280 (325)
T ss_dssp             TCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEEECC---BTTBCCCSCEEEEEE-SSSSEEEEEETTSEEEEEET
T ss_pred             CCccEEeeeccccceeccccccccceeeeeecccccccccc---ccccccccceeeeec-cCCCEEEEEeCCCeEEEEEC
Confidence            778999999996 6889999999999999999998877664   344444    44444 68899999999999999999


Q ss_pred             CCCcEEEEEecCC---ceeEEEeccCCCEEEEccccc
Q 021399          221 RTLELIKTYVTER---PVNAVTMSPLLDHVVLGGGQD  254 (313)
Q Consensus       221 ~~~~~~~~~~~~~---~~~~~~~~p~~~~~~~~~~~~  254 (313)
                      +++++++.+....   ....+++.+.++..+++++.|
T Consensus       281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d  317 (325)
T d1pgua1         281 TTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLD  317 (325)
T ss_dssp             TTTEEEEEEECCTTCGGGCEEEEEEEETTEEEEEETT
T ss_pred             CCCCEEEEEEecCCcccCeEEEEEECCCCEEEEEECC
Confidence            9999998876322   234445544444344555544

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.96  E-value=5.8e-27  Score=194.68  Aligned_cols=234  Identities=15%  Similarity=0.136  Sum_probs=170.8

Q ss_pred             CcEEEEecCCCCceEEEEECCCCCeEEEeeCCCcEEEEECCCCeEEEEec--CCCCeeEEEeecCCeEEEEECCCceecc
Q 021399           42 GERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFN--FDSPARSVDFAVGDKLAVITTDPFMELN  119 (313)
Q Consensus        42 ~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~v~vWd~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~  119 (313)
                      |+..+++.||.++|++++|+|++++|+||+.||+|++||+++++....+.  +...+..+.|.+++.++++..+....+ 
T Consensus         2 g~~~~~~~GH~~~V~~l~~s~dg~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~h~~~v~~v~~~~~g~~~~~~~d~~v~~-   80 (299)
T d1nr0a2           2 GSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDLFTVSWDDHLKV-   80 (299)
T ss_dssp             TEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTSCEEEEETTTEEEE-
T ss_pred             CccceEcCCCCCCcEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEcCCCCCcEEEEEeeccceeecccceeeEEE-
Confidence            56788999999999999999999999999999999999999998877664  345788899999888777766543322 


Q ss_pred             ccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEccCCCEEEEeeCCCeEEEEECCCCceeeecccccCceeceEEEEE
Q 021399          120 SAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAK  199 (313)
Q Consensus       120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~t~~~d~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~  199 (313)
                           ++........   .......+...+..+.++|+++.+++++ ++.+++|+....  ....     ....+.++++
T Consensus        81 -----~~~~~~~~~~---~~~~~~~~~~~~~~~~~s~~g~~~~~~~-~~~i~~~~~~~~--~~~~-----~~~~~~~~~~  144 (299)
T d1nr0a2          81 -----VPAGGSGVDS---SKAVANKLSSQPLGLAVSADGDIAVAAC-YKHIAIYSHGKL--TEVP-----ISYNSSCVAL  144 (299)
T ss_dssp             -----ECSSSSSSCT---TSCCEEECSSCEEEEEECTTSSCEEEEE-SSEEEEEETTEE--EEEE-----CSSCEEEEEE
T ss_pred             -----eccCCccccc---cccccccccccccccccccccccccccc-cccccccccccc--cccc-----cccccccccc
Confidence                 2211111000   0111223456778899999998766554 678999996532  2211     2345788999


Q ss_pred             CCCCCEEEEeeCCCcEEEEECCCCcEEE--EEecCCceeEEEeccCCCEEEEcccccCceeEeeccCCCceeeeeeehhh
Q 021399          200 AADGSHFLTGSLDKSAKLWDARTLELIK--TYVTERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKIL  277 (313)
Q Consensus       200 s~~~~~l~s~s~dg~i~iwd~~~~~~~~--~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  277 (313)
                      +|+++++++|+.||.|++||+++++...  ...+...+.+++|+|++..+++++. + ..            +++||..+
T Consensus       145 s~~~~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-d-~~------------i~~~~~~~  210 (299)
T d1nr0a2         145 SNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAFLVATDQ-S-RK------------VIPYSVAN  210 (299)
T ss_dssp             CTTSCEEEEEETTSEEEEEEEETTEEEEEEEEECSSCEEEEEECTTSSEEEEEET-T-SC------------EEEEEGGG
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccccccccccc-c-cc------------cccccccc
Confidence            9999999999999999999998876543  3345778999999999988776543 2 22            34555443


Q ss_pred             hhh---hccccccccceeEEEECCCCCeeEEE
Q 021399          278 QEE---IGGVKGHFGPINALAFNPDGKRYGFL  306 (313)
Q Consensus       278 ~~~---~~~~~~h~~~V~~~~fspdgk~~~~~  306 (313)
                      +..   ...+.+|..+|++++|+|+|++++..
T Consensus       211 ~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~sg  242 (299)
T d1nr0a2         211 NFELAHTNSWTFHTAKVACVSWSPDNVRLATG  242 (299)
T ss_dssp             TTEESCCCCCCCCSSCEEEEEECTTSSEEEEE
T ss_pred             cccccccccccccccccccccccccccceEEE
Confidence            332   33567899999999999999998754

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.95  E-value=1.1e-24  Score=183.03  Aligned_cols=233  Identities=21%  Similarity=0.304  Sum_probs=183.2

Q ss_pred             cccccccceeEEEEccCCCEEEEeeCCCCeEEEeCCCC----cEEEEecCCCCceEEEEECCCCCeEEEeeCCCcEEEEE
Q 021399            5 LMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNG----ERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWN   80 (313)
Q Consensus         5 ~l~~h~~~v~~~~fs~~g~~l~s~s~d~~i~iw~~~~~----~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~v~vWd   80 (313)
                      .+.+|..+|.+++|+|+++++++|+.|+.+++|+....    .....+.+|........... +..+.....|...+.|.
T Consensus        92 ~~~~~~~~v~~v~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~  170 (340)
T d1tbga_          92 AIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLD-DNQIVTSSGDTTCALWD  170 (340)
T ss_dssp             EEECSCSCEEEEEECTTSSEEEEEETTCCEEEEESSSSCSCCCEEEEECCCSSCEEEEEEEE-TTEEEEEETTTEEEEEE
T ss_pred             EEecccccEEeeEeeccceeeeeecccceeecccccccccccccceeccccccccccccccc-ccccccccccccccccc
Confidence            57789999999999999999999999999999987654    34567788888777666554 45677889999999999


Q ss_pred             CCCCeEEEEec-CCCCeeEEEeecCCeEEEE-ECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEccCC
Q 021399           81 VETGAQLFTFN-FDSPARSVDFAVGDKLAVI-TTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLN  158 (313)
Q Consensus        81 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~  158 (313)
                      ........... .........+.+.....+. ..+.      .+.++++      ..+..+..+.+|.+.|.+++|+|++
T Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~------~v~i~d~------~~~~~~~~~~~h~~~i~~v~~~p~~  238 (340)
T d1tbga_         171 IETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDA------SAKLWDV------REGMCRQTFTGHESDINAICFFPNG  238 (340)
T ss_dssp             TTTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTT------EEEEEET------TTTEEEEEECCCSSCEEEEEECTTS
T ss_pred             cccccccccccccceeEeeeccccccceeEEeecCc------eEEEEEC------CCCcEEEEEeCCCCCeEEEEECCCC
Confidence            88766554433 3445555555555444433 2222      2223322      2345677788999999999999999


Q ss_pred             CEEEEeeCCCeEEEEECCCCceeeecccccCceeceEEEEECCCCCEEEEeeCCCcEEEEECCCCcEEEEEe-cCCceeE
Q 021399          159 RTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYV-TERPVNA  237 (313)
Q Consensus       159 ~~i~t~~~d~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~-~~~~~~~  237 (313)
                      ++|++|+.|+.|++||+.....+..... ..+...+.+++|+|++++|++|+.||.|++||+++++++.++. +..+|.+
T Consensus       239 ~~l~s~s~d~~i~~~~~~~~~~~~~~~~-~~~~~~i~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~H~~~V~~  317 (340)
T d1tbga_         239 NAFATGSDDATCRLFDLRADQELMTYSH-DNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSC  317 (340)
T ss_dssp             SEEEEEETTSCEEEEETTTTEEEEEECC-TTCCSCEEEEEECSSSCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEE
T ss_pred             CEEEEEeCCCeEEEEeeccccccccccc-ccccCceEEEEECCCCCEEEEEECCCEEEEEECCCCcEEEEEcCCCCCEEE
Confidence            9999999999999999998877655432 3467789999999999999999999999999999999999886 4678999


Q ss_pred             EEeccCCCEEEEcc
Q 021399          238 VTMSPLLDHVVLGG  251 (313)
Q Consensus       238 ~~~~p~~~~~~~~~  251 (313)
                      ++|+|++..+++++
T Consensus       318 l~~s~d~~~l~s~s  331 (340)
T d1tbga_         318 LGVTDDGMAVATGS  331 (340)
T ss_dssp             EEECTTSSCEEEEE
T ss_pred             EEEeCCCCEEEEEc
Confidence            99999998877654

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.95  E-value=2.1e-26  Score=199.21  Aligned_cols=194  Identities=16%  Similarity=0.223  Sum_probs=151.1

Q ss_pred             ccccceeEEEEccC-----CCEEEEeeCCCCeEEEeCCCCc------------------EEEEecCCCCceEEEEECCCC
Q 021399            8 GHERPLTYLKYNKD-----GDLLFSCAKDHTPTVWFADNGE------------------RLGTYRGHNGAVWCCDVSRDS   64 (313)
Q Consensus         8 ~h~~~v~~~~fs~~-----g~~l~s~s~d~~i~iw~~~~~~------------------~~~~~~~H~~~V~~~~~~~~~   64 (313)
                      .+...+..++|.++     +.++++++.|+.+++|++....                  .......+...+.+++|+|++
T Consensus       117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg  196 (393)
T d1sq9a_         117 MKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG  196 (393)
T ss_dssp             GGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS
T ss_pred             cCCCceEEEEEecCCCcccccEEEEEcCCCcEEEEEeecCCcccceeeeeeccceecccceecccCCCCcEEEEEECCCC
Confidence            34556677777765     4689999999999999974321                  111223456678999999987


Q ss_pred             CeEEEeeCCCcEEEEECCCCeEEEEecCCCCeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecC
Q 021399           65 MTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKG  144 (313)
Q Consensus        65 ~~l~s~s~D~~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  144 (313)
                       +|+||+.|++|++||+.+++++..+..                                              ...+.+
T Consensus       197 -~lasgs~Dg~i~iwd~~~~~~~~~~~~----------------------------------------------~~~l~~  229 (393)
T d1sq9a_         197 -LIATGFNNGTVQISELSTLRPLYNFES----------------------------------------------QHSMIN  229 (393)
T ss_dssp             -EEEEECTTSEEEEEETTTTEEEEEEEC----------------------------------------------CC---C
T ss_pred             -EEEEEeCCCcEEEEeeccccccccccc----------------------------------------------cccccc
Confidence             889999999999999998876543321                                              112356


Q ss_pred             CCCceEEEEEccCCCEEEEeeCCC---eEEEEECCCCceeeeccc----------ccCceeceEEEEECCCCCEEEEeeC
Q 021399          145 PQGRINRAVWGPLNRTIISAGEDA---IVRIWDTETGKLLKESDK----------ETGHKKTITSLAKAADGSHFLTGSL  211 (313)
Q Consensus       145 ~~~~i~~~~~~~~~~~i~t~~~d~---~i~lwd~~~~~~~~~~~~----------~~~h~~~v~~~~~s~~~~~l~s~s~  211 (313)
                      |...|.+++|+|++++|++|+.|+   .|++||+++++.+..+..          ..+|...|++++|+|++++|+|||.
T Consensus       230 h~~~V~~l~~spdg~~l~sgs~D~t~~~i~lwd~~~g~~~~~l~~~~~~~~~~~~~~gH~~~V~~l~fspd~~~l~S~s~  309 (393)
T d1sq9a_         230 NSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGW  309 (393)
T ss_dssp             CCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEET
T ss_pred             ccceEEEcccccccceeeeecCCCCcceeeecccccceeeeeeccccccccceeeeecccCceeeeccCCCCCeeEEECC
Confidence            888999999999999999999886   599999999887665431          2479999999999999999999999


Q ss_pred             CCcEEEEECCCCcEEEEEec-CCcee----EEEeccCCCEEE
Q 021399          212 DKSAKLWDARTLELIKTYVT-ERPVN----AVTMSPLLDHVV  248 (313)
Q Consensus       212 dg~i~iwd~~~~~~~~~~~~-~~~~~----~~~~~p~~~~~~  248 (313)
                      |++|++||+++++++.++.. ...+.    .++|+|++..++
T Consensus       310 D~~v~vWd~~~g~~~~~l~gH~~~v~~~~~~~~~~~~~~~~~  351 (393)
T d1sq9a_         310 DGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLA  351 (393)
T ss_dssp             TSEEEEEETTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCS
T ss_pred             CCEEEEEECCCCCEEEEECCcCCcccCCccEEEECCCCCEEE
Confidence            99999999999999999864 33343    578888887653

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.94  E-value=1e-24  Score=185.03  Aligned_cols=178  Identities=11%  Similarity=0.079  Sum_probs=145.6

Q ss_pred             EEEEcc-CCCEEEEeeCCCCeEEEeCCCCcEEEEecCCCCceEEEEECCCCCeEEEeeCCC--cEEEEECCCCeEEEEec
Q 021399           15 YLKYNK-DGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQ--TAKLWNVETGAQLFTFN   91 (313)
Q Consensus        15 ~~~fs~-~g~~l~s~s~d~~i~iw~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~--~v~vWd~~~~~~~~~~~   91 (313)
                      .-.||| ||+++++++. |.|++||.+.+..+..  +|.+.|.+++|+|||+.|++++.|.  .|++||.++++..    
T Consensus         7 ~~~fSP~dG~~~a~~~~-g~v~v~d~~~~~~~~~--~~~~~v~~~~~spDg~~l~~~~~~~g~~v~v~d~~~~~~~----   79 (360)
T d1k32a3           7 AEDFSPLDGDLIAFVSR-GQAFIQDVSGTYVLKV--PEPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTGKAE----   79 (360)
T ss_dssp             EEEEEECGGGCEEEEET-TEEEEECTTSSBEEEC--SCCSCEEEEEECSSSEEEEEEEETTEEEEEEEETTTCCEE----
T ss_pred             cccccCCCCCEEEEEEC-CeEEEEECCCCcEEEc--cCCCCEEEEEECCCCCEEEEEEcCCCCEEEEEECCCCcEE----
Confidence            356999 9999998875 7999999988877653  7999999999999999988877553  7999998876432    


Q ss_pred             CCCCeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEccCCCEEEEeeCCCeEE
Q 021399           92 FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVR  171 (313)
Q Consensus        92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~t~~~d~~i~  171 (313)
                                                                       .+..|.+.+..++|+|+++++++++.++.++
T Consensus        80 -------------------------------------------------~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~  110 (360)
T d1k32a3          80 -------------------------------------------------KFEENLGNVFAMGVDRNGKFAVVANDRFEIM  110 (360)
T ss_dssp             -------------------------------------------------ECCCCCCSEEEEEECTTSSEEEEEETTSEEE
T ss_pred             -------------------------------------------------EeeCCCceEEeeeecccccccceeccccccc
Confidence                                                             1234567788999999999999999999999


Q ss_pred             EEECCCCceeeecccccCceeceEEEEECCCCCEEEEe----------eCCCcEEEEECCCCcEEEEEecCCceeEEEec
Q 021399          172 IWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTG----------SLDKSAKLWDARTLELIKTYVTERPVNAVTMS  241 (313)
Q Consensus       172 lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~----------s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~  241 (313)
                      +|+..+++......   .|...+.+++|+|||++|+.+          ..++.+++||+++++.............++|+
T Consensus       111 ~~~~~~~~~~~~~~---~~~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~s  187 (360)
T d1k32a3         111 TVDLETGKPTVIER---SREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFAATTENSHDYAPAFD  187 (360)
T ss_dssp             EEETTTCCEEEEEE---CSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTEEEECSCSSSBEEEEEEC
T ss_pred             cccccccceeeeee---cccccccchhhccceeeeeeeccccccceeeccccceeeeccccCceeeeccccccccccccc
Confidence            99999887655443   467788999999999999854          34567899999998877666666678889999


Q ss_pred             cCCCEEEEcc
Q 021399          242 PLLDHVVLGG  251 (313)
Q Consensus       242 p~~~~~~~~~  251 (313)
                      |++..++.++
T Consensus       188 pdg~~l~~~s  197 (360)
T d1k32a3         188 ADSKNLYYLS  197 (360)
T ss_dssp             TTSCEEEEEE
T ss_pred             CCCCEEEEEe
Confidence            9999887654

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=2.3e-22  Score=168.43  Aligned_cols=231  Identities=26%  Similarity=0.401  Sum_probs=155.8

Q ss_pred             ccccccccceeEEEEccCCCEEEEeeCCCCeEEEeCCCCcEEEEecCCCCceEEEEEC----------------------
Q 021399            4 ILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVS----------------------   61 (313)
Q Consensus         4 ~~l~~h~~~v~~~~fs~~g~~l~s~s~d~~i~iw~~~~~~~~~~~~~H~~~V~~~~~~----------------------   61 (313)
                      .++.+|.+.|.+++|+|+  +|++|+.|+.+++|+............+...+......                      
T Consensus        51 ~~~~~h~~~V~~v~~~~~--~l~s~s~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~  128 (342)
T d2ovrb2          51 RTLVGHTGGVWSSQMRDN--IIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQ  128 (342)
T ss_dssp             EECCCCSSCEEEEEEETT--EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEESSSCC
T ss_pred             EEEeCCCCCEEEEEeCCC--ccccceecccccccccccccceecccccceeEeeeecccccccccccceeEEEeeccccc
Confidence            368899999999999875  99999999999999988776655554444443332222                      


Q ss_pred             ----------------CCCCeEEEeeCCCcEEEEECCCCeEEEEecCCCCeeEEEeec-CCeEEEEECCCceecccccee
Q 021399           62 ----------------RDSMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAV-GDKLAVITTDPFMELNSAIHV  124 (313)
Q Consensus        62 ----------------~~~~~l~s~s~D~~v~vWd~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~  124 (313)
                                      +....+++++.|+.+++||+...+.+..+..... ....+.. +..++.+..+.      .+.+
T Consensus       129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~-~~~~~~~~~~~l~s~~~dg------~i~~  201 (342)
T d2ovrb2         129 CLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQGHTN-RVYSLQFDGIHVVSGSLDT------SIRV  201 (342)
T ss_dssp             EEEEEECCSSCEEEEEECSSCEEEEETTSCEEEEEGGGTEEEEEECCCSS-CEEEEEECSSEEEEEETTS------CEEE
T ss_pred             ceeeeecccccceeeccccceeeeecCCCeEEEeecccceeeEEEcCccc-ccccccCCCCEEEEEeCCC------eEEE
Confidence                            2233455556666666666655554444332111 1111222 22333333332      2223


Q ss_pred             eeeeeCCCCCCCceEEEecCCCCceEEEEEccCCCEEEEeeCCCeEEEEECCCCceeeecccccCceeceEEEEECCCCC
Q 021399          125 KRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGS  204 (313)
Q Consensus       125 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~t~~~d~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~  204 (313)
                      +++      .....+....+|...+..+.+++  +++++++.|+.|++||....+....+.....|...+.++.++  ++
T Consensus       202 ~d~------~~~~~~~~~~~~~~~v~~~~~~~--~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~--~~  271 (342)
T d2ovrb2         202 WDV------ETGNCIHTLTGHQSLTSGMELKD--NILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFN--KN  271 (342)
T ss_dssp             EET------TTCCEEEEECCCCSCEEEEEEET--TEEEEEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEEC--SS
T ss_pred             eec------ccceeeeEecccccceeEEecCC--CEEEEEcCCCEEEEEecccccccccccccceeeeceeecccC--CC
Confidence            322      23455677788888888776654  699999999999999998887776666556677888888776  56


Q ss_pred             EEEEeeCCCcEEEEECCCCcEEEEEec------CCceeEEEeccCCCEEEEccccc
Q 021399          205 HFLTGSLDKSAKLWDARTLELIKTYVT------ERPVNAVTMSPLLDHVVLGGGQD  254 (313)
Q Consensus       205 ~l~s~s~dg~i~iwd~~~~~~~~~~~~------~~~~~~~~~~p~~~~~~~~~~~~  254 (313)
                      ++++|+.||+|++||++++++++++..      ...+.+++|+|++..+++ |+.+
T Consensus       272 ~~~s~s~Dg~i~iwd~~tg~~i~~~~~~~~~~~~~~v~~v~~s~~~~~la~-g~~d  326 (342)
T d2ovrb2         272 FVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAV-GSRN  326 (342)
T ss_dssp             EEEEEETTSEEEEEETTTCCEEEEEEECTTGGGTCEEEEEEECSSEEEEEE-ECSS
T ss_pred             eeEEEcCCCEEEEEECCCCCEEEEEecccCCCCCCCEEEEEECCCCCEEEE-EeCC
Confidence            899999999999999999999988742      346899999998755444 4444

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.92  E-value=2.4e-23  Score=175.34  Aligned_cols=236  Identities=18%  Similarity=0.280  Sum_probs=154.6

Q ss_pred             ccccccccceeEEEEccCCCEEEEeeCCCCeEEEeCCCCcEEEEecCCCC--ceEEEEECCCCCeEEEeeCCCcEEEEEC
Q 021399            4 ILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNG--AVWCCDVSRDSMTLITGSADQTAKLWNV   81 (313)
Q Consensus         4 ~~l~~h~~~v~~~~fs~~g~~l~s~s~d~~i~iw~~~~~~~~~~~~~H~~--~V~~~~~~~~~~~l~s~s~D~~v~vWd~   81 (313)
                      ..+.+|+++|.+++|+|+ .+|++|+.|+.|++|+....+.......+..  ......++++++.+++++.|++|++||+
T Consensus        47 ~~l~~H~~~V~~l~~s~~-~~l~s~s~D~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~iw~~  125 (355)
T d1nexb2          47 LQLSGHDGGVWALKYAHG-GILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKL  125 (355)
T ss_dssp             EEEECCSSCEEEEEEETT-TEEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEEEEETTEEEEEEEETTSEEEEEEC
T ss_pred             EEEECCCCCEEEEEEcCC-CEEEEEecccccccccccccccccccccccccccccccccccccceeeeecCCCcEEEEEc
Confidence            367899999999999985 5899999999999999999887766655443  3455667888889999999999999998


Q ss_pred             CCCeEEEEecC------------CC----------CeeEEEeec-CCeEEEEECCCceecc-------------------
Q 021399           82 ETGAQLFTFNF------------DS----------PARSVDFAV-GDKLAVITTDPFMELN-------------------  119 (313)
Q Consensus        82 ~~~~~~~~~~~------------~~----------~~~~~~~~~-~~~~~~~~~~~~~~~~-------------------  119 (313)
                      .+.........            ..          ........+ +..++....+......                   
T Consensus       126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~  205 (355)
T d1nexb2         126 PKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIY  205 (355)
T ss_dssp             CC-----------CCCEEESCTTTCTTEEEEEECCSSCEEEEEEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEE
T ss_pred             cCCceeccccccceeccceeccccccceeeeeeeccccccccccccceeeeecccceeeeeecccccceeeeeccccccc
Confidence            77543321100            00          000001111 1222222221111000                   


Q ss_pred             -----------------ccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEccCCCEEEEeeCCCeEEEEECCCCceee
Q 021399          120 -----------------SAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLK  182 (313)
Q Consensus       120 -----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~t~~~d~~i~lwd~~~~~~~~  182 (313)
                                       ..+.+++      ...+..+..+.+|.+.|..+.+++  +++++++.|+.|++||+++.....
T Consensus       206 ~~~~~~~~~~~~~~~~d~~i~i~d------~~~~~~~~~~~~h~~~v~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~~  277 (355)
T d1nexb2         206 STIYDHERKRCISASMDTTIRIWD------LENGELMYTLQGHTALVGLLRLSD--KFLVSAAADGSIRGWDANDYSRKF  277 (355)
T ss_dssp             EEEEETTTTEEEEEETTSCEEEEE------TTTCCEEEEECCCSSCCCEEEECS--SEEEEECTTSEEEEEETTTCCEEE
T ss_pred             cccccccceeeecccccceEEeee------cccccccccccccccccccccccc--ceeeeeecccccccccccccceec
Confidence                             0001111      123456677888999999998875  689999999999999998765432


Q ss_pred             ecccccCceeceEEE-EECCCCCEEEEeeCCCcEEEEECCCCcEEEEEe--cCCceeEEEeccCCCEEEEcccccCc
Q 021399          183 ESDKETGHKKTITSL-AKAADGSHFLTGSLDKSAKLWDARTLELIKTYV--TERPVNAVTMSPLLDHVVLGGGQDAS  256 (313)
Q Consensus       183 ~~~~~~~h~~~v~~~-~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~--~~~~~~~~~~~p~~~~~~~~~~~~~~  256 (313)
                      .     .|...+.++ ++++++.++++| .|++|++||+++++++....  +..++.+++|+|.  .++++++.|+.
T Consensus       278 ~-----~~~~~~~~~~~~~~~~~~l~~g-~d~~i~vwd~~tg~~~~~~~~~~~~~V~~v~~~~~--~~~~~~s~dg~  346 (355)
T d1nexb2         278 S-----YHHTNLSAITTFYVSDNILVSG-SENQFNIYNLRSGKLVHANILKDADQIWSVNFKGK--TLVAAVEKDGQ  346 (355)
T ss_dssp             E-----EECTTCCCCCEEEECSSEEEEE-ETTEEEEEETTTCCBCCSCTTTTCSEEEEEEEETT--EEEEEEESSSC
T ss_pred             c-----cccCCceEEEEEcCCCCEEEEE-eCCEEEEEECCCCCEEEEEecCCCCCEEEEEEcCC--eEEEEEECCCc
Confidence            2     244555554 466777766655 59999999999999886532  4567999999874  56666665543

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.92  E-value=4.3e-24  Score=186.59  Aligned_cols=268  Identities=12%  Similarity=0.045  Sum_probs=159.9

Q ss_pred             cccccccceeEEEEccCCCEEEEeeCCCCeEEEeCCCCcEEE--E---ecCCCCceEEEEECCCCCeE-EEeeCCCcEEE
Q 021399            5 LMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLG--T---YRGHNGAVWCCDVSRDSMTL-ITGSADQTAKL   78 (313)
Q Consensus         5 ~l~~h~~~v~~~~fs~~g~~l~s~s~d~~i~iw~~~~~~~~~--~---~~~H~~~V~~~~~~~~~~~l-~s~s~D~~v~v   78 (313)
                      ++..|. .+..++|||||++|++++.|+.+++||+++++...  +   ..+|.+.+.+++|+|||+++ +++..++++++
T Consensus        57 ~l~~g~-~~~~vafSPDGk~l~~~~~d~~v~vwd~~t~~~~~~~~i~~~~~~~~~~~s~~~spDG~~l~v~~~~~~~v~i  135 (426)
T d1hzua2          57 VIDTGY-AVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIGIEARSVESSKFKGYEDRYTIAGAYWPPQFAI  135 (426)
T ss_dssp             EEECCS-SEEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEECCSEEEEEEECCSTTCTTTEEEEEEEESSEEEE
T ss_pred             EEeCCC-CeeEEEECCCCCEEEEEeCCCCEEEEEccCCceeEEEEEeCCCCCcceEEeeeecCCCCEEEEeecCCCeEEE
Confidence            445554 58999999999999999999999999999887432  2   34677778889999999976 55568999999


Q ss_pred             EECCCCeEEEEecC------------CCCeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCC
Q 021399           79 WNVETGAQLFTFNF------------DSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQ  146 (313)
Q Consensus        79 Wd~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  146 (313)
                      ||..+++.+.....            ......+.+.++....+......      .....+...  . ..........+.
T Consensus       136 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~d~~~~~~~~~~~------~~i~~~~~~--~-~~~~~~~~~~~~  206 (426)
T d1hzua2         136 MDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKET------GKVLLVNYK--D-IDNLTVTSIGAA  206 (426)
T ss_dssp             EETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTT------TEEEEEECS--S-SSSCEEEEEECC
T ss_pred             EcCCccceeEEeeccCCCccceeecCCCceeEEEECCCCCEEEEecCCC------CeEEEEEec--c-ccceeeEEeccC
Confidence            99999887655431            11122333333333222211100      000000000  0 000000111122


Q ss_pred             CceEEEEEccCCCEEEE------------------------------------------------eeCCCeEEEEECCCC
Q 021399          147 GRINRAVWGPLNRTIIS------------------------------------------------AGEDAIVRIWDTETG  178 (313)
Q Consensus       147 ~~i~~~~~~~~~~~i~t------------------------------------------------~~~d~~i~lwd~~~~  178 (313)
                      ..+..+.++|+++++++                                                .+.|+.+.+|+....
T Consensus       207 ~~~~~~~~~~~g~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~~~~~~~~  286 (426)
T d1hzua2         207 PFLADGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANFVHPKYGPVWSTSHLGDGSISLIGTDPK  286 (426)
T ss_dssp             SSEEEEEECTTSCEEEEEETTCSEEEEEETTTTEEEEEEECSSCCCCSCCEEEEETTTEEEEEEECTTTCEEEEEECCTT
T ss_pred             CccEeeeECCCCcEEEeeeecccceeeeecccccEEEEeccCCcccccceeeeecCCCCceEEeccCCCceEEEeecccc
Confidence            22333333333333222                                                234555555554332


Q ss_pred             -------ceeeecccccCceeceEEEEECCCCCEEE-------EeeCCCcEEEEECCCCcEEEEEe----------cCCc
Q 021399          179 -------KLLKESDKETGHKKTITSLAKAADGSHFL-------TGSLDKSAKLWDARTLELIKTYV----------TERP  234 (313)
Q Consensus       179 -------~~~~~~~~~~~h~~~v~~~~~s~~~~~l~-------s~s~dg~i~iwd~~~~~~~~~~~----------~~~~  234 (313)
                             +....   ..+|...+..++++||+.+|+       +++.|++|++||++++++..++.          +...
T Consensus       287 ~~~~~~~~~~~~---l~g~~~~v~~v~~sPdg~~l~v~~~~~~s~~~~~tv~vwd~~t~~~~~~~~~~~~~~~~~~~~~r  363 (426)
T d1hzua2         287 NHPQYAWKKVAE---LQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKR  363 (426)
T ss_dssp             TCTTTBTSEEEE---EECSSSCCCCEECCTTCSEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCSSCCC
T ss_pred             ccccccceEeEE---EecCCCceeEEEcCCCCceEEEeecCCCCcccCCEEEEEECCCCCcCeEEeccchhcccCCCCcc
Confidence                   22222   235777899999999999999       46678999999999988765542          1234


Q ss_pred             eeEEEeccCCCEEEEcc---cccCceeEeeccCCCceeeeeeehhhhhhhccccccccceeEEEECCCCCee
Q 021399          235 VNAVTMSPLLDHVVLGG---GQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKRY  303 (313)
Q Consensus       235 ~~~~~~~p~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~fspdgk~~  303 (313)
                      +..++|+|+|.++++++   +++++.            +++||..+.+....+.++.      .++|+||+.
T Consensus       364 v~~~~fSpDGk~i~vs~~~~~~~~~~------------i~v~D~~T~k~~~~i~~~~------~~tp~Gk~~  417 (426)
T d1hzua2         364 VVQPEYNKRGDEVWFSVWNGKNDSSA------------LVVVDDKTLKLKAVVKDPR------LITPTGKFN  417 (426)
T ss_dssp             EEEEEECSSSSEEEEEECCCTTSCCE------------EEEEETTTTEEEEEECCTT------CCSEEEEEE
T ss_pred             EEEEEECCCCCEEEEEEecCCCCCCe------------EEEEECCCCeEEEEECCCC------ccCCCceEe
Confidence            77889999999887653   223333            4455555555444444443      357888764

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.91  E-value=3.7e-23  Score=172.96  Aligned_cols=240  Identities=11%  Similarity=0.054  Sum_probs=161.1

Q ss_pred             ccccccceeEEEEccCC-CEEEEeeCCCCeEEEeCCCCcEEEEecCCCCce-EEEEECCCCCeEEEeeCCCcEEEEECCC
Q 021399            6 MKGHERPLTYLKYNKDG-DLLFSCAKDHTPTVWFADNGERLGTYRGHNGAV-WCCDVSRDSMTLITGSADQTAKLWNVET   83 (313)
Q Consensus         6 l~~h~~~v~~~~fs~~g-~~l~s~s~d~~i~iw~~~~~~~~~~~~~H~~~V-~~~~~~~~~~~l~s~s~D~~v~vWd~~~   83 (313)
                      ..+|.++|.+++|+|++ .+|++|+.|+.|++|+............+...+ ....+.++...+++++.|+++++||+++
T Consensus        52 ~~~h~~~V~~v~f~~~~~~~l~sg~~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wd~~~  131 (342)
T d1yfqa_          52 SLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRN  131 (342)
T ss_dssp             EEECSSCEEEEEEEESSSEEEEEEETTSCEEEECSSSSSSEEECBSCCCCSCEEEEEEETTTEEEEEETTSEEEEECHHH
T ss_pred             ecCCCCCEEEEEEeCCCCCEEEEcccccceeeeecccccccccccccccccccccccccccccccccccccccceeeccc
Confidence            34799999999999875 589999999999999999887776666655444 4555667778999999999999999854


Q ss_pred             CeE----EEEec---CCCCeeEEEeecC-CeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEE-
Q 021399           84 GAQ----LFTFN---FDSPARSVDFAVG-DKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVW-  154 (313)
Q Consensus        84 ~~~----~~~~~---~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-  154 (313)
                      +..    .....   .........+.+. ..++....+..      +..+++....   ...................+ 
T Consensus       132 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~------i~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~  202 (342)
T d1yfqa_         132 YGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQ------VQWFRLPLCE---DDNGTIEESGLKYQIRDVALL  202 (342)
T ss_dssp             HTTBCEEEEESCSSSSSSCCCEEEEEECSSEEEEEESTTE------EEEEESSCCT---TCCCEEEECSCSSCEEEEEEC
T ss_pred             cccceeeecccccccccceeeeeeeeccCCceeeecCCCc------EEEEecccCc---ccceeeeecccccceeeeEee
Confidence            321    11111   1112223333333 33333333322      2222221111   11112222233334444444 


Q ss_pred             ccCCCEEEEeeCCCeEEEEECCCCceee------------ecccccCceeceEEEEECCCCCEEEEeeCCCcEEEEECCC
Q 021399          155 GPLNRTIISAGEDAIVRIWDTETGKLLK------------ESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDART  222 (313)
Q Consensus       155 ~~~~~~i~t~~~d~~i~lwd~~~~~~~~------------~~~~~~~h~~~v~~~~~s~~~~~l~s~s~dg~i~iwd~~~  222 (313)
                      ...+..+++++.|+.+.+|+........            ......+|...+++++|+|++++|+||+.||+|++||+++
T Consensus       203 ~~~~~~~~~~s~dg~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~lasg~~Dg~v~vWD~~~  282 (342)
T d1yfqa_         203 PKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQT  282 (342)
T ss_dssp             SGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTT
T ss_pred             cCCCCEEEeecCCCeEEEEEecCCcceeeccccceeeeeeeccCCCcccccceeEEecCCccEEEEECCCCEEEEEECCC
Confidence            4556789999999999999875432111            1112245777899999999999999999999999999999


Q ss_pred             CcEEEEEecCCceeEEEeccCCCEEEEccccc
Q 021399          223 LELIKTYVTERPVNAVTMSPLLDHVVLGGGQD  254 (313)
Q Consensus       223 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~  254 (313)
                      ++++.++........++|+|+++.++++.+++
T Consensus       283 ~~~l~~~~~~~~~~~~~~s~~~~~l~~a~sdd  314 (342)
T d1yfqa_         283 RKKIKNFAKFNEDSVVKIACSDNILCLATSDD  314 (342)
T ss_dssp             TEEEEECCCCSSSEEEEEEECSSEEEEEEECT
T ss_pred             CcEEEEecCCCCCEEEEEEeCCCEEEEEEcCC
Confidence            99998886656677888999999888876654

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.91  E-value=8.5e-23  Score=173.01  Aligned_cols=236  Identities=9%  Similarity=0.078  Sum_probs=163.5

Q ss_pred             ccccccceeEEEEccCCCEEEEeeCCC--CeEEEeCCCCcEEEEecCCCCceEEEEECCCCCeEEEeeCCCcEEEEECCC
Q 021399            6 MKGHERPLTYLKYNKDGDLLFSCAKDH--TPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVET   83 (313)
Q Consensus         6 l~~h~~~v~~~~fs~~g~~l~s~s~d~--~i~iw~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~v~vWd~~~   83 (313)
                      ..+|...|.+++|+|||++|++++.|.  .|++||.++++.. .+..|.+.|.+++|+|+++++++++.++.+++|++.+
T Consensus        38 ~~~~~~~v~~~~~spDg~~l~~~~~~~g~~v~v~d~~~~~~~-~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~  116 (360)
T d1k32a3          38 KVPEPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTGKAE-KFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLET  116 (360)
T ss_dssp             ECSCCSCEEEEEECSSSEEEEEEEETTEEEEEEEETTTCCEE-ECCCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTT
T ss_pred             EccCCCCEEEEEECCCCCEEEEEEcCCCCEEEEEECCCCcEE-EeeCCCceEEeeeecccccccceeccccccccccccc
Confidence            347999999999999999999877654  7999999887654 6788999999999999999999999999999999999


Q ss_pred             CeEEEEecC-CCCeeEEEeecCCeEEEEECC-Cceeccc----cceeeeeeeCCCCCCCceEEEecCCCCceEEEEEccC
Q 021399           84 GAQLFTFNF-DSPARSVDFAVGDKLAVITTD-PFMELNS----AIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPL  157 (313)
Q Consensus        84 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~-~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~  157 (313)
                      ++....... ......+.|+++++.++.... .......    ...+++.       .......+..+...+..+.|+|+
T Consensus       117 ~~~~~~~~~~~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~~~~v~d~-------~~~~~~~~~~~~~~~~~~~~spd  189 (360)
T d1k32a3         117 GKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDM-------EGRKIFAATTENSHDYAPAFDAD  189 (360)
T ss_dssp             CCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEET-------TTTEEEECSCSSSBEEEEEECTT
T ss_pred             cceeeeeecccccccchhhccceeeeeeeccccccceeeccccceeeecc-------ccCceeeecccccccccccccCC
Confidence            887766653 456677889988776654321 1111111    1111111       12233444556677888999999


Q ss_pred             CCEEEEeeCCCeEEEEECCCCceee-------ecccc-----------------------cC----------ceeceEEE
Q 021399          158 NRTIISAGEDAIVRIWDTETGKLLK-------ESDKE-----------------------TG----------HKKTITSL  197 (313)
Q Consensus       158 ~~~i~t~~~d~~i~lwd~~~~~~~~-------~~~~~-----------------------~~----------h~~~v~~~  197 (313)
                      +++|++++.++.+++||........       .+...                       .+          .......+
T Consensus       190 g~~l~~~s~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  269 (360)
T d1k32a3         190 SKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMI  269 (360)
T ss_dssp             SCEEEEEESCCCCCEECSSSSCEECCSCBEEEEEESSTTCCCGGGCCCGGGSCCCCCCCCTTGGGGCEECSCCCBCEEEE
T ss_pred             CCEEEEEeCCCceEcccccccceeeccccceEEEecccCccccceECCCcCcccccceeecccccceeecccCcCceeEe
Confidence            9999999999999999865432110       00000                       00          01122233


Q ss_pred             EECCCC-------------CEEEEeeCCCcEEEEECCCCcEEEEEecCCceeEEEeccCCCEEEEccc
Q 021399          198 AKAADG-------------SHFLTGSLDKSAKLWDARTLELIKTYVTERPVNAVTMSPLLDHVVLGGG  252 (313)
Q Consensus       198 ~~s~~~-------------~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~  252 (313)
                      ...+++             .++++++.++.|++||+++++... +  ...+..++|+|++..+++++.
T Consensus       270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~-~--~~~v~~~~~SpDG~~l~~~~~  334 (360)
T d1k32a3         270 IPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRKVTE-V--KNNLTDLRLSADRKTVMVRKD  334 (360)
T ss_dssp             EECSSEEEEEECCCCCSHHHHHHCCCCCEEEEEEETTTCCEEE-E--EEEEEEEEECTTSCEEEEEET
T ss_pred             eecCCCceEEEEEecCCCeeEEEecCCCCEEEEEECCCCeEEE-e--cCCcCEEEECCCCCEEEEEEC
Confidence            333322             235666778999999999877532 2  245889999999999877544

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.90  E-value=1.2e-21  Score=161.29  Aligned_cols=224  Identities=17%  Similarity=0.170  Sum_probs=157.8

Q ss_pred             ccccccceeEEEEccCCCEEEEeeCCCCeEEEeCCCCcEEEEecCCCCceEEEEECCCCCeEEEeeCCCcEEEEECCCCe
Q 021399            6 MKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGA   85 (313)
Q Consensus         6 l~~h~~~v~~~~fs~~g~~l~s~s~d~~i~iw~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~v~vWd~~~~~   85 (313)
                      ..+|...|.++.|+++ ..+++++.|+++++|+..+.       .+...+.++++++++..+++ +.++.+.+|+..+++
T Consensus        42 ~~~h~~~V~~~~~~~~-~~~~s~s~D~~v~~w~~~~~-------~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~  112 (287)
T d1pgua2          42 HQDHSNLIVSLDNSKA-QEYSSISWDDTLKVNGITKH-------EFGSQPKVASANNDGFTAVL-TNDDDLLILQSFTGD  112 (287)
T ss_dssp             ECCCCSCEEEEECCST-TCCEEEETTTEEEETTEEEE-------ECSSCEEEEEECSSSEEEEE-ETTSEEEEEETTTCC
T ss_pred             CCCCCCCEEEEEecCC-CeEEEEeecccccccccccc-------ccccceeeeeeccCCceEEE-eecccceeeecccee
Confidence            5689999999999975 56799999999999986432       23445778889988876665 456678899999888


Q ss_pred             EEEEecCCCCeeEEEeec-CCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEe-cCCCCceEEEEEccCCCEEEE
Q 021399           86 QLFTFNFDSPARSVDFAV-GDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLIL-KGPQGRINRAVWGPLNRTIIS  163 (313)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~i~t  163 (313)
                      .+.......+...  +.+ +..+++...+.-     ..+++++..      ....... ..+.+.+.+++|+|++.+|++
T Consensus       113 ~~~~~~~~~~~~~--~~~~~~~~~v~~~~~~-----~v~~~~~~~------~~~~~~~~~~~~~~v~~~~~s~~~~~l~~  179 (287)
T d1pgua2         113 IIKSVRLNSPGSA--VSLSQNYVAVGLEEGN-----TIQVFKLSD------LEVSFDLKTPLRAKPSYISISPSETYIAA  179 (287)
T ss_dssp             EEEEEECSSCEEE--EEECSSEEEEEETTTS-----CEEEEETTE------EEEEEECSSCCSSCEEEEEECTTSSEEEE
T ss_pred             eeeeccccceeee--eeccCcceeeeccccc-----eeeeeeccc------cceeeeeeeccCCceeEEEeccCcccccc
Confidence            8777766555443  333 334444433321     112222110      1111222 235678999999999999999


Q ss_pred             eeCCCeEEEEECCCCceeeecccccCceeceEEEEECCC----------CCEEEEeeCCCcEEEEECCC-CcEEEEEe-c
Q 021399          164 AGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAAD----------GSHFLTGSLDKSAKLWDART-LELIKTYV-T  231 (313)
Q Consensus       164 ~~~d~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~----------~~~l~s~s~dg~i~iwd~~~-~~~~~~~~-~  231 (313)
                      |+.|+.|++||+.++......  ..+|...|.+++|+|+          +.++++|+.|++|++||+++ .+++..+. +
T Consensus       180 g~~dg~i~i~d~~~~~~~~~~--~~~h~~~v~~~~~~p~~~~~~~~~~~~~~l~sgs~D~~i~iw~~~~~~~~~~~~~~h  257 (287)
T d1pgua2         180 GDVMGKILLYDLQSREVKTSR--WAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAH  257 (287)
T ss_dssp             EETTSCEEEEETTTTEEEECC--SCCCSSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCTTCCEEETTSS
T ss_pred             ccccccccceeeccccccccc--ccccccccceeeecccccccccccCCCCeeEeecCCCeEEEEECCCCCeEEEEeCCC
Confidence            999999999999887754432  2468999999999864          46899999999999999977 44555443 4


Q ss_pred             CCceeEEEeccCCCEEEEcccccC
Q 021399          232 ERPVNAVTMSPLLDHVVLGGGQDA  255 (313)
Q Consensus       232 ~~~~~~~~~~p~~~~~~~~~~~~~  255 (313)
                      ...+.+++|+|++ .+++ ++.|+
T Consensus       258 ~~~V~~v~~~~~~-~l~s-~g~D~  279 (287)
T d1pgua2         258 KDGVNNLLWETPS-TLVS-SGADA  279 (287)
T ss_dssp             TTCEEEEEEEETT-EEEE-EETTS
T ss_pred             CCCeEEEEECCCC-EEEE-EECCC
Confidence            6689999999975 4444 44443

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=99.89  E-value=6.5e-20  Score=151.21  Aligned_cols=249  Identities=14%  Similarity=0.148  Sum_probs=177.9

Q ss_pred             EEeeCCCCeEEEeCCCCcEEEEecCCCCceEEEEECCCCCeE-EEeeCCCcEEEEECCCCeEEEEecCCCCeeEEEeecC
Q 021399           26 FSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTL-ITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVG  104 (313)
Q Consensus        26 ~s~s~d~~i~iw~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l-~s~s~D~~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~  104 (313)
                      ++.+.|++|.|||+++++.++++... .....++|+|||+++ ++++.++.|++||+.+++.+..+........+.+.++
T Consensus         6 V~~~~~~~v~v~D~~t~~~~~~i~~g-~~p~~va~spdG~~l~v~~~~~~~i~v~d~~t~~~~~~~~~~~~~~~~~~~~~   84 (301)
T d1l0qa2           6 IANSESDNISVIDVTSNKVTATIPVG-SNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGSSPQGVAVSPD   84 (301)
T ss_dssp             EEETTTTEEEEEETTTTEEEEEEECS-SSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSSSEEEEEECTT
T ss_pred             EEECCCCEEEEEECCCCeEEEEEECC-CCceEEEEeCCCCEEEEEECCCCEEEEEECCCCceeeeeeccccccccccccc
Confidence            45678999999999999999988754 456889999999966 5777899999999999998888776667778888876


Q ss_pred             CeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEccCCCEEE-EeeCCCeEEEEECCCCceeee
Q 021399          105 DKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTII-SAGEDAIVRIWDTETGKLLKE  183 (313)
Q Consensus       105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~-t~~~d~~i~lwd~~~~~~~~~  183 (313)
                      +...++....    ......++.      ..+.....+. +......+.++|+++.++ ++..++.+.+|+..+...+..
T Consensus        85 ~~~~~~~~~~----~~~~~~~~~------~~~~~~~~~~-~~~~~~~~~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~  153 (301)
T d1l0qa2          85 GKQVYVTNMA----SSTLSVIDT------TSNTVAGTVK-TGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINT  153 (301)
T ss_dssp             SSEEEEEETT----TTEEEEEET------TTTEEEEEEE-CSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEE
T ss_pred             cccccccccc----cceeeeccc------ccceeeeecc-ccccceEEEeecCCCeeeeeeccccceeeeeccccceeee
Confidence            6554443211    011111111      1223333333 334567888999998775 556688899999998877665


Q ss_pred             cccccCceeceEEEEECCCCCEEEEeeCC-CcEEEEECCCCcEEEEEecCCceeEEEeccCCCEEEEccccc-CceeEee
Q 021399          184 SDKETGHKKTITSLAKAADGSHFLTGSLD-KSAKLWDARTLELIKTYVTERPVNAVTMSPLLDHVVLGGGQD-ASAVTTT  261 (313)
Q Consensus       184 ~~~~~~h~~~v~~~~~s~~~~~l~s~s~d-g~i~iwd~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~-~~~~~~~  261 (313)
                      +.    +...+..+++++++..+++++.+ +.+.+|+....+....+........+++++++..++++..+. ...+   
T Consensus       154 ~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~v---  226 (301)
T d1l0qa2         154 VS----VGRSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVKVEAAPSGIAVNPEGTKAYVTNVDKYFNTV---  226 (301)
T ss_dssp             EE----CCSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSSEEEEEEECTTSSEEEEEEECSSCCEE---
T ss_pred             cc----cCCCceEEEeeccccceeeecccccccccccccceeeeecccccCCcceeeccccccccccccccceeeee---
Confidence            53    34457889999999998888765 567788888888777777777788899999999887764332 2333   


Q ss_pred             ccCCCceeeeeeehhhhhhhccccccccceeEEEECCCCCee
Q 021399          262 DHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKRY  303 (313)
Q Consensus       262 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~fspdgk~~  303 (313)
                               ++||..+++.+..+. +...+++++||||||++
T Consensus       227 ---------~v~D~~t~~~~~~~~-~~~~~~~va~spdg~~l  258 (301)
T d1l0qa2         227 ---------SMIDTGTNKITARIP-VGPDPAGIAVTPDGKKV  258 (301)
T ss_dssp             ---------EEEETTTTEEEEEEE-CCSSEEEEEECTTSSEE
T ss_pred             ---------eeeecCCCeEEEEEc-CCCCEEEEEEeCCCCEE
Confidence                     445555544444443 34567999999999975

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=99.88  E-value=1.3e-19  Score=149.38  Aligned_cols=236  Identities=12%  Similarity=0.079  Sum_probs=169.6

Q ss_pred             cceeEEEEccCCCEE-EEeeCCCCeEEEeCCCCcEEEEecCCCCceEEEEECCCCCeE-EEeeCCCcEEEEECCCCeEEE
Q 021399           11 RPLTYLKYNKDGDLL-FSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTL-ITGSADQTAKLWNVETGAQLF   88 (313)
Q Consensus        11 ~~v~~~~fs~~g~~l-~s~s~d~~i~iw~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l-~s~s~D~~v~vWd~~~~~~~~   88 (313)
                      ..+..++|+|||++| ++++.++.|++||+.+++.+.++..|.. +..++|+++++.+ +++..++.+.+|+..+++...
T Consensus        32 ~~p~~va~spdG~~l~v~~~~~~~i~v~d~~t~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  110 (301)
T d1l0qa2          32 SNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGSS-PQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAG  110 (301)
T ss_dssp             SSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSSS-EEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEE
T ss_pred             CCceEEEEeCCCCEEEEEECCCCEEEEEECCCCceeeeeecccc-ccccccccccccccccccccceeeecccccceeee
Confidence            356889999999987 5667899999999999999999988764 5789999998854 556678899999999998888


Q ss_pred             EecCCCCeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEccCCCEEEEeeCC-
Q 021399           89 TFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGED-  167 (313)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~t~~~d-  167 (313)
                      .+........+.+.+++..+......-    .....++.      ........+. +......+.++|++..+++++.+ 
T Consensus       111 ~~~~~~~~~~~~~~~dg~~~~~~~~~~----~~~~~~~~------~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~  179 (301)
T d1l0qa2         111 TVKTGKSPLGLALSPDGKKLYVTNNGD----KTVSVINT------VTKAVINTVS-VGRSPKGIAVTPDGTKVYVANFDS  179 (301)
T ss_dssp             EEECSSSEEEEEECTTSSEEEEEETTT----TEEEEEET------TTTEEEEEEE-CCSSEEEEEECTTSSEEEEEETTT
T ss_pred             eccccccceEEEeecCCCeeeeeeccc----cceeeeec------cccceeeecc-cCCCceEEEeeccccceeeecccc
Confidence            777777777888888766554432210    00111110      1122222333 23456778899999888777654 


Q ss_pred             CeEEEEECCCCceeeecccccCceeceEEEEECCCCCEEEEeeC---CCcEEEEECCCCcEEEEEecCCceeEEEeccCC
Q 021399          168 AIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSL---DKSAKLWDARTLELIKTYVTERPVNAVTMSPLL  244 (313)
Q Consensus       168 ~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~---dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~p~~  244 (313)
                      +.+.+|+...........    ....+..++++++++.++.++.   +++|++||+.+++.+..+.....+..++|+|++
T Consensus       180 ~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~g~~~~v~~~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~va~spdg  255 (301)
T d1l0qa2         180 MSISVIDTVTNSVIDTVK----VEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPVGPDPAGIAVTPDG  255 (301)
T ss_dssp             TEEEEEETTTTEEEEEEE----CSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTEEEEEEECCSSEEEEEECTTS
T ss_pred             cccccccccceeeeeccc----ccCCcceeeccccccccccccccceeeeeeeeecCCCeEEEEEcCCCCEEEEEEeCCC
Confidence            677788877666554432    2345778899999998876654   468999999999999888777778999999999


Q ss_pred             CEEEEcccccCceeEeecc
Q 021399          245 DHVVLGGGQDASAVTTTDH  263 (313)
Q Consensus       245 ~~~~~~~~~~~~~~~~~~~  263 (313)
                      +.++++++.++ .+.+||.
T Consensus       256 ~~l~va~~~~~-~i~v~D~  273 (301)
T d1l0qa2         256 KKVYVALSFCN-TVSVIDT  273 (301)
T ss_dssp             SEEEEEETTTT-EEEEEET
T ss_pred             CEEEEEECCCC-eEEEEEC
Confidence            99877655443 3333443

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.88  E-value=1.3e-19  Score=148.11  Aligned_cols=225  Identities=23%  Similarity=0.401  Sum_probs=156.1

Q ss_pred             ccccccccceeEEEEccCCCEEEEeeCCCCeEEEeCCCCcEEEEecCCCCceEEEEECCCCCeEEEeeCCCcEEEEECCC
Q 021399            4 ILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVET   83 (313)
Q Consensus         4 ~~l~~h~~~v~~~~fs~~g~~l~s~s~d~~i~iw~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~v~vWd~~~   83 (313)
                      .+|++|.+.|.+++|  ++++|++|+.|+.|++|+...+........+......  +.+....++++..++.+++|+..+
T Consensus        49 ~~l~~H~~~V~~v~~--~~~~l~s~s~D~~i~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~  124 (293)
T d1p22a2          49 RILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLH--LRFNNGMMVTCSKDRSIAVWDMAS  124 (293)
T ss_dssp             EEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESSSCCEEEEECCCCSCEEE--EECCTTEEEEEETTSCEEEEECSS
T ss_pred             EEEecCCCCEeeeec--ccceeeccccccccccccccccccccccccccccccc--ccccccceeecccccceeEeeccc
Confidence            368899999999887  6789999999999999999999888777766655543  334556889999999999999876


Q ss_pred             CeEEE---Eec-CCCCeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEccCCC
Q 021399           84 GAQLF---TFN-FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNR  159 (313)
Q Consensus        84 ~~~~~---~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~  159 (313)
                      .....   ... ....+....+.+ ........+..      +..++.      ...+.+..+.++...+..+.++  +.
T Consensus       125 ~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~s~d~~------i~~~d~------~~~~~~~~~~~~~~~v~~~~~~--~~  189 (293)
T d1p22a2         125 PTDITLRRVLVGHRAAVNVVDFDD-KYIVSASGDRT------IKVWNT------STCEFVRTLNGHKRGIACLQYR--DR  189 (293)
T ss_dssp             SSCCEEEEEECCCSSCEEEEEEET-TEEEEEETTSE------EEEEET------TTCCEEEEEECCSSCEEEEEEE--TT
T ss_pred             cccccccccccccccccccceecc-cccccccCCCc------eeeecC------CCCcEEEEEcccccccccccCC--CC
Confidence            54322   221 223333333332 23333333322      222221      2344566777888787777665  46


Q ss_pred             EEEEeeCCCeEEEEECCCCceeeecccccCceeceEEEEECCCCCEEEEeeCCCcEEEEECCC---------CcEEEEEe
Q 021399          160 TIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDART---------LELIKTYV  230 (313)
Q Consensus       160 ~i~t~~~d~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~dg~i~iwd~~~---------~~~~~~~~  230 (313)
                      .+++++.|+.|++||+++.+.+....   +|...+..  +++++.+|++|+.||.|++||+++         ..++..+.
T Consensus       190 ~l~~~~~dg~i~i~d~~~~~~~~~~~---~~~~~v~~--~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~  264 (293)
T d1p22a2         190 LVVSGSSDNTIRLWDIECGACLRVLE---GHEELVRC--IRFDNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLV  264 (293)
T ss_dssp             EEEEEETTSCEEEEETTTCCEEEEEC---CCSSCEEE--EECCSSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEEC
T ss_pred             eEEEecCCCEEEEEecccceeeeeec---ccceeeee--ccccceEEEEEcCCCEEEEEECCCCccccccCCceeeEEec
Confidence            89999999999999999888776543   46666665  456788999999999999999653         24566654


Q ss_pred             -cCCceeEEEeccCCCEEEEcccccC
Q 021399          231 -TERPVNAVTMSPLLDHVVLGGGQDA  255 (313)
Q Consensus       231 -~~~~~~~~~~~p~~~~~~~~~~~~~  255 (313)
                       +...|.+++|++  ..+ ++++.|+
T Consensus       265 ~H~~~V~~v~~d~--~~l-~s~s~Dg  287 (293)
T d1p22a2         265 EHSGRVFRLQFDE--FQI-VSSSHDD  287 (293)
T ss_dssp             CCSSCCCCEEECS--SCE-EECCSSS
T ss_pred             CCCCCEEEEEEcC--CEE-EEEecCC
Confidence             456788999865  444 4445443

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.88  E-value=2.1e-21  Score=169.59  Aligned_cols=287  Identities=13%  Similarity=0.040  Sum_probs=172.3

Q ss_pred             ccccccceeEEEEccCCCEEEEeeCCCCeEEEeCCCCcE--EEE---ecCCCCceEEEEECCCCCeE-EEeeCCCcEEEE
Q 021399            6 MKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGER--LGT---YRGHNGAVWCCDVSRDSMTL-ITGSADQTAKLW   79 (313)
Q Consensus         6 l~~h~~~v~~~~fs~~g~~l~s~s~d~~i~iw~~~~~~~--~~~---~~~H~~~V~~~~~~~~~~~l-~s~s~D~~v~vW   79 (313)
                      +..| ..+..++|||||++|++++.|+.+++||+.+++.  ..+   ..+|.+.+++.+|+|||+++ ++++.+++|++|
T Consensus        58 ~~~g-~~~~~v~fSpDG~~l~~~s~dg~v~~~d~~t~~~~~~~~i~~~~~~~~~~~s~~~SpDG~~l~vs~~~~~~v~i~  136 (432)
T d1qksa2          58 LDTG-YAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARSIETSKMEGWEDKYAIAGAYWPPQYVIM  136 (432)
T ss_dssp             EECS-SCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCSEEEEEEECCSTTCTTTEEEEEEEETTEEEEE
T ss_pred             EeCC-CCeeEEEECCCCCEEEEEcCCCCEEEEEeeCCCceEEEEEecCCCCCCeEEecccCCCCCEEEEEcCCCCeEEEE
Confidence            4445 3589999999999999999999999999988753  333   34677788888999999965 788899999999


Q ss_pred             ECCCCeEEEEecC------------CCCeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCC
Q 021399           80 NVETGAQLFTFNF------------DSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQG  147 (313)
Q Consensus        80 d~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  147 (313)
                      |..+++.+.....            ......+.+++++...++....      ...+..+.  ........+..+ .+..
T Consensus       137 d~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~~~vs~~~------~~~i~~~d--~~~~~~~~~~~i-~~g~  207 (432)
T d1qksa2         137 DGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKE------TGKILLVD--YTDLNNLKTTEI-SAER  207 (432)
T ss_dssp             ETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETT------TTEEEEEE--TTCSSEEEEEEE-ECCS
T ss_pred             eCccccceeeeccCCccccceeccCCCceeEEEECCCCCEEEEEEcc------CCeEEEEE--ccCCCcceEEEE-cccC
Confidence            9999988765532            1222334455544333322111      01111110  001011111122 2334


Q ss_pred             ceEEEEEccCCCEEEEee-CCCeEEEEECCCCceeeecccc--cCceeceEEEEECCCCCEEEEee-CCCcEEEEECCCC
Q 021399          148 RINRAVWGPLNRTIISAG-EDAIVRIWDTETGKLLKESDKE--TGHKKTITSLAKAADGSHFLTGS-LDKSAKLWDARTL  223 (313)
Q Consensus       148 ~i~~~~~~~~~~~i~t~~-~d~~i~lwd~~~~~~~~~~~~~--~~h~~~v~~~~~s~~~~~l~s~s-~dg~i~iwd~~~~  223 (313)
                      ....+.++|+++++++++ .++.+.++|..+++....+...  ..|........+...+...++.. .|+.+.+|+..+.
T Consensus       208 ~~~~~~~spdg~~~~va~~~~~~v~v~d~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~lg~~~v~~~~~~~~  287 (432)
T d1qksa2         208 FLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANFVHPTFGPVWATSHMGDDSVALIGTDPE  287 (432)
T ss_dssp             SEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCTTCEEEEETTTEEEEEEEBSSSSEEEEEECCTT
T ss_pred             ccccceECCCCCEEEEeccccceEEEeecccceEEEEeccCccccccCcccceecCCCCceecccccCCceEEecccccc
Confidence            567899999999877665 4568999999887765543221  12334444555555555554443 3788999987653


Q ss_pred             c-------EEEEEec-CCceeEEEeccCCCEEEEccccc-----CceeEeeccCCC-----ceeeeeeehhhhhhhcccc
Q 021399          224 E-------LIKTYVT-ERPVNAVTMSPLLDHVVLGGGQD-----ASAVTTTDHRAG-----KFEAKFFDKILQEEIGGVK  285 (313)
Q Consensus       224 ~-------~~~~~~~-~~~~~~~~~~p~~~~~~~~~~~~-----~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~  285 (313)
                      .       ....+.. ......++.+|+..++.......     ...+..+|.+.-     ...+++|+..+...+   .
T Consensus       288 ~~~~~~~~v~~~~~~~~g~~~~~~s~p~~~~lw~~~~~~~~~~~~~sv~vpDg~~la~~s~d~~~k~w~~~~~~~l---~  364 (432)
T d1qksa2         288 GHPDNAWKILDSFPALGGGSLFIKTHPNSQYLYVDATLNPEAEISGSVAVFDIKAMTGDGSDPEFKTLPIAEWAGI---T  364 (432)
T ss_dssp             TCTTTBTSEEEEEECSCSCCCCEECCTTCSEEEEECTTCSSHHHHTCEEEEEGGGCCCSSSCCCEEEECHHHHHTC---C
T ss_pred             cccccccEEEEEEEcCCCCeEEEEecCCccceeecccCCCCCCeeeEEEEEechhhcccccCCceEeccccccccc---C
Confidence            2       3333332 22234445555555544322110     112333443321     124678887655443   4


Q ss_pred             ccccceeEEEECCCCCeeEE
Q 021399          286 GHFGPINALAFNPDGKRYGF  305 (313)
Q Consensus       286 ~h~~~V~~~~fspdgk~~~~  305 (313)
                      .|..+|.+++||||||++.+
T Consensus       365 ~~~~~v~~~~fS~DG~~v~~  384 (432)
T d1qksa2         365 EGQPRVVQGEFNKDGTEVWF  384 (432)
T ss_dssp             SSCCEEEEEEECTTSSEEEE
T ss_pred             CCCCcEEEeEECCCCCEEEE
Confidence            57788999999999998744

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.87  E-value=1.5e-20  Score=157.32  Aligned_cols=233  Identities=14%  Similarity=0.078  Sum_probs=154.9

Q ss_pred             CEEEEeeCCCCeEEEeCCCCcEEEEecCC--CCceEEEEECCCCCeE-EEeeCCCcEEEEECCCCeEEEEecCCC-----
Q 021399           23 DLLFSCAKDHTPTVWFADNGERLGTYRGH--NGAVWCCDVSRDSMTL-ITGSADQTAKLWNVETGAQLFTFNFDS-----   94 (313)
Q Consensus        23 ~~l~s~s~d~~i~iw~~~~~~~~~~~~~H--~~~V~~~~~~~~~~~l-~s~s~D~~v~vWd~~~~~~~~~~~~~~-----   94 (313)
                      ++|++++.|++|+|||+++++.++++..+  ...+.+++|+|||+++ ++++.|+.|.+||+.+++.+.......     
T Consensus         2 ~~~vt~~~d~~v~v~D~~s~~~~~~i~~~~~~~~~~~i~~spDg~~l~v~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~   81 (337)
T d1pbyb_           2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERV   81 (337)
T ss_dssp             EEEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEE
T ss_pred             eEEEEEcCCCEEEEEECCCCeEEEEEECCCCCCCccEEEECCCCCEEEEEECCCCeEEEEECCCCcEEEEEecCCCcccc
Confidence            48999999999999999999999988754  4567899999999976 566789999999999999887665432     


Q ss_pred             -CeeEEEeecCCeEEEEECCCceec-cccc---eeeeeeeCCCCCCCceEEEecCCCCceEEEEEccCCCEEEEeeCCCe
Q 021399           95 -PARSVDFAVGDKLAVITTDPFMEL-NSAI---HVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAI  169 (313)
Q Consensus        95 -~~~~~~~~~~~~~~~~~~~~~~~~-~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~t~~~d~~  169 (313)
                       ....+.++++++.++......... ....   ....+. +  .........+. +...+..+.++|+++++++++.+  
T Consensus        82 ~~~~~v~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~-d--~~~~~~~~~~~-~~~~~~~~~~s~dg~~l~~~~~~--  155 (337)
T d1pbyb_          82 KSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALY-D--AETLSRRKAFE-APRQITMLAWARDGSKLYGLGRD--  155 (337)
T ss_dssp             ECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEE-E--TTTTEEEEEEE-CCSSCCCEEECTTSSCEEEESSS--
T ss_pred             cceeeEEEcCCCcEEEEeecCCcceeeeccccccceeec-c--ccCCeEEEecc-ccCCceEEEEcCCCCEEEEEcCC--
Confidence             233566777766554433211100 0000   000000 0  11222333333 23456678899999998888755  


Q ss_pred             EEEEECCCCceeeecccc--------------------------------------------------------------
Q 021399          170 VRIWDTETGKLLKESDKE--------------------------------------------------------------  187 (313)
Q Consensus       170 i~lwd~~~~~~~~~~~~~--------------------------------------------------------------  187 (313)
                      +.+||..+++........                                                              
T Consensus       156 ~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  235 (337)
T d1pbyb_         156 LHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMRE  235 (337)
T ss_dssp             EEEEETTTTEEEEEECSTTTTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEE
T ss_pred             cceeeeecCcEEEEeecCCccccceecCCcceeeccccccceeeeeeeeeeeccceeeecccCccEEEEEcCCCcEEEEE
Confidence            567888766544322110                                                              


Q ss_pred             -cCceeceEEEEECCCCCEEEEeeCCCcEEEEECCCCcEEEEEecCCceeEEEeccCCCEEEEcccccCceeEeeccCC
Q 021399          188 -TGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRA  265 (313)
Q Consensus       188 -~~h~~~v~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~  265 (313)
                       ..+...+..+++++++.+++.+  ++.|++||+++++.+..+.....+.+++|+|++..+++++. + +.+.+||...
T Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~--~~~i~v~d~~~~~~~~~~~~~~~~~~~~~s~dG~~l~v~~~-~-~~i~v~D~~t  310 (337)
T d1pbyb_         236 VRIMDVFYFSTAVNPAKTRAFGA--YNVLESFDLEKNASIKRVPLPHSYYSVNVSTDGSTVWLGGA-L-GDLAAYDAET  310 (337)
T ss_dssp             EEECSSCEEEEEECTTSSEEEEE--ESEEEEEETTTTEEEEEEECSSCCCEEEECTTSCEEEEESB-S-SEEEEEETTT
T ss_pred             ecCCCcceEEEEecccceEEEEc--cccEEEEECCCCcEEEEEcCCCCEEEEEECCCCCEEEEEeC-C-CcEEEEECCC
Confidence             0112234556677888877655  58899999999999999988888999999999999887643 2 3344444433

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.87  E-value=1e-20  Score=164.94  Aligned_cols=240  Identities=10%  Similarity=0.018  Sum_probs=160.4

Q ss_pred             EEEccCCC--EEEEeeCCCCeEEEeCCCCcEEEEecCCCCceEEEEECCCCCeEEEeeCCCcEEEEECCCCeEEEEecCC
Q 021399           16 LKYNKDGD--LLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFNFD   93 (313)
Q Consensus        16 ~~fs~~g~--~l~s~s~d~~i~iw~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~v~vWd~~~~~~~~~~~~~   93 (313)
                      ..++.|.+  ++++.+.|++|+|||+++++++.++..|. .+..++|+|||+++++++.|+++++||+.+++....... 
T Consensus        24 ~~~~~d~~~~~~V~~~~dg~v~vwD~~t~~~~~~l~~g~-~~~~vafSPDGk~l~~~~~d~~v~vwd~~t~~~~~~~~i-  101 (426)
T d1hzua2          24 QLNDLDLPNLFSVTLRDAGQIALVDGDSKKIVKVIDTGY-AVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEI-  101 (426)
T ss_dssp             CCSCCCGGGEEEEEETTTTEEEEEETTTCSEEEEEECCS-SEEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEE-
T ss_pred             ccccCCCCeEEEEEEcCCCEEEEEECCCCcEEEEEeCCC-CeeEEEECCCCCEEEEEeCCCCEEEEEccCCceeEEEEE-
Confidence            34555543  66888899999999999999999999875 599999999999999999999999999988764322110 


Q ss_pred             CCeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEccCCCEEE-EeeCCCeEEE
Q 021399           94 SPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTII-SAGEDAIVRI  172 (313)
Q Consensus        94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~-t~~~d~~i~l  172 (313)
                                                                    ....+|.+.+.++.|+|+|++++ ++..++.+++
T Consensus       102 ----------------------------------------------~~~~~~~~~~~s~~~spDG~~l~v~~~~~~~v~i  135 (426)
T d1hzua2         102 ----------------------------------------------KIGIEARSVESSKFKGYEDRYTIAGAYWPPQFAI  135 (426)
T ss_dssp             ----------------------------------------------ECCSEEEEEEECCSTTCTTTEEEEEEEESSEEEE
T ss_pred             ----------------------------------------------eCCCCCcceEEeeeecCCCCEEEEeecCCCeEEE
Confidence                                                          00011223344556788998864 5568899999


Q ss_pred             EECCCCceeeecccc--------cCceeceEEEEECCCCCEEEEeeC-CCcEEEEECCCCc--EEEEEecCCceeEEEec
Q 021399          173 WDTETGKLLKESDKE--------TGHKKTITSLAKAADGSHFLTGSL-DKSAKLWDARTLE--LIKTYVTERPVNAVTMS  241 (313)
Q Consensus       173 wd~~~~~~~~~~~~~--------~~h~~~v~~~~~s~~~~~l~s~s~-dg~i~iwd~~~~~--~~~~~~~~~~~~~~~~~  241 (313)
                      ||..++.+.......        ..+......++.++++..++.... .+.+.+++.....  .+..+.....+..++++
T Consensus       136 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~  215 (426)
T d1hzua2         136 MDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIGAAPFLADGGWD  215 (426)
T ss_dssp             EETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECSSSSSCEEEEEECCSSEEEEEEC
T ss_pred             EcCCccceeEEeeccCCCccceeecCCCceeEEEECCCCCEEEEecCCCCeEEEEEeccccceeeEEeccCCccEeeeEC
Confidence            999988776543211        112344566677777777665554 3556666665543  33444556678899999


Q ss_pred             cCCCEEEEcccccCceeEeeccCCCc-----------------------------------eeeeeeeh-------hhhh
Q 021399          242 PLLDHVVLGGGQDASAVTTTDHRAGK-----------------------------------FEAKFFDK-------ILQE  279 (313)
Q Consensus       242 p~~~~~~~~~~~~~~~~~~~~~~~~~-----------------------------------~~~~~~~~-------~~~~  279 (313)
                      |++.+++++..... .+..++...+.                                   ..+..|+.       ...+
T Consensus       216 ~~g~~~~~a~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~~~~~~~~~~~~~~~~  294 (426)
T d1hzua2         216 SSHRYFMTAANNSN-KVAVIDSKDRRLSALVDVGKTPHPGRGANFVHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWK  294 (426)
T ss_dssp             TTSCEEEEEETTCS-EEEEEETTTTEEEEEEECSSCCCCSCCEEEEETTTEEEEEEECTTTCEEEEEECCTTTCTTTBTS
T ss_pred             CCCcEEEeeeeccc-ceeeeecccccEEEEeccCCcccccceeeeecCCCCceEEeccCCCceEEEeeccccccccccce
Confidence            99998887653332 22222221111                                   11122221       1123


Q ss_pred             hhccccccccceeEEEECCCCCeeE
Q 021399          280 EIGGVKGHFGPINALAFNPDGKRYG  304 (313)
Q Consensus       280 ~~~~~~~h~~~V~~~~fspdgk~~~  304 (313)
                      ....+.+|...|+.++|||||++++
T Consensus       295 ~~~~l~g~~~~v~~v~~sPdg~~l~  319 (426)
T d1hzua2         295 KVAELQGQGGGSLFIKTHPKSSHLY  319 (426)
T ss_dssp             EEEEEECSSSCCCCEECCTTCSEEE
T ss_pred             EeEEEecCCCceeEEEcCCCCceEE
Confidence            4456789999999999999999987

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.84  E-value=3e-19  Score=155.74  Aligned_cols=197  Identities=11%  Similarity=-0.016  Sum_probs=143.8

Q ss_pred             ccCCCEEEEeeCCCCeEEEeCCCCcEEEEecCCCCceEEEEECCCCCeEEEeeCCCcEEEEECCCCeEEEEecCCCCeeE
Q 021399           19 NKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFNFDSPARS   98 (313)
Q Consensus        19 s~~g~~l~s~s~d~~i~iw~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~v~vWd~~~~~~~~~~~~~~~~~~   98 (313)
                      +++.-++++.+.|++|.|||.++++++.++..|. .+..++|+|||+++++++.|+++++||+.+++.......      
T Consensus        29 ~~~~~~~v~~~d~g~v~v~D~~t~~v~~~~~~g~-~~~~v~fSpDG~~l~~~s~dg~v~~~d~~t~~~~~~~~i------  101 (432)
T d1qksa2          29 DLENLFSVTLRDAGQIALIDGSTYEIKTVLDTGY-AVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEI------  101 (432)
T ss_dssp             CGGGEEEEEETTTTEEEEEETTTCCEEEEEECSS-CEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEE------
T ss_pred             CCCcEEEEEEcCCCEEEEEECCCCcEEEEEeCCC-CeeEEEECCCCCEEEEEcCCCCEEEEEeeCCCceEEEEE------
Confidence            3333456899999999999999999999998874 699999999999999999999999999987653211100      


Q ss_pred             EEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEccCCCEE-EEeeCCCeEEEEECCC
Q 021399           99 VDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTI-ISAGEDAIVRIWDTET  177 (313)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i-~t~~~d~~i~lwd~~~  177 (313)
                                                               ....+|.+.+.+..|+|+|+++ ++++.++.|++||..+
T Consensus       102 -----------------------------------------~~~~~~~~~~~s~~~SpDG~~l~vs~~~~~~v~i~d~~t  140 (432)
T d1qksa2         102 -----------------------------------------KIGSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGET  140 (432)
T ss_dssp             -----------------------------------------ECCSEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTT
T ss_pred             -----------------------------------------ecCCCCCCeEEecccCCCCCEEEEEcCCCCeEEEEeCcc
Confidence                                                     0001122233344578899875 7888899999999999


Q ss_pred             Cceeeecccc--------cCceeceEEEEECCCCCEE-EEeeCCCcEEEEECCCCcEE--EEEecCCceeEEEeccCCCE
Q 021399          178 GKLLKESDKE--------TGHKKTITSLAKAADGSHF-LTGSLDKSAKLWDARTLELI--KTYVTERPVNAVTMSPLLDH  246 (313)
Q Consensus       178 ~~~~~~~~~~--------~~h~~~v~~~~~s~~~~~l-~s~s~dg~i~iwd~~~~~~~--~~~~~~~~~~~~~~~p~~~~  246 (313)
                      ++++..+...        ..+.....++.++++|..+ ++...++.|.+||..+.+..  .++........++|+|++.+
T Consensus       141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~~~vs~~~~~~i~~~d~~~~~~~~~~~i~~g~~~~~~~~spdg~~  220 (432)
T d1qksa2         141 LEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRY  220 (432)
T ss_dssp             CCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEEEEECCSSEEEEEECTTSCE
T ss_pred             ccceeeeccCCccccceeccCCCceeEEEECCCCCEEEEEEccCCeEEEEEccCCCcceEEEEcccCccccceECCCCCE
Confidence            8876654321        1244567788999999875 55667899999999987754  34455667889999999998


Q ss_pred             EEEcccccCceeEeeccC
Q 021399          247 VVLGGGQDASAVTTTDHR  264 (313)
Q Consensus       247 ~~~~~~~~~~~~~~~~~~  264 (313)
                      ++++... ...+...|..
T Consensus       221 ~~va~~~-~~~v~v~d~~  237 (432)
T d1qksa2         221 FITAANA-RNKLVVIDTK  237 (432)
T ss_dssp             EEEEEGG-GTEEEEEETT
T ss_pred             EEEeccc-cceEEEeecc
Confidence            8877543 3344444443

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.84  E-value=1.9e-18  Score=144.31  Aligned_cols=219  Identities=15%  Similarity=0.085  Sum_probs=152.4

Q ss_pred             cccccceeEEEEccCCCEE-EEeeCCCCeEEEeCCCCcEEEEecCCCC-----ceEEEEECCCCCeEEEee---------
Q 021399            7 KGHERPLTYLKYNKDGDLL-FSCAKDHTPTVWFADNGERLGTYRGHNG-----AVWCCDVSRDSMTLITGS---------   71 (313)
Q Consensus         7 ~~h~~~v~~~~fs~~g~~l-~s~s~d~~i~iw~~~~~~~~~~~~~H~~-----~V~~~~~~~~~~~l~s~s---------   71 (313)
                      ..+...+..++|+|||+++ ++++.++.|.+||+++++.+..+..+..     .+..++|+|+++.+++++         
T Consensus        30 ~~~~~~~~~i~~spDg~~l~v~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~~~~~~~~~  109 (337)
T d1pbyb_          30 ADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTH  109 (337)
T ss_dssp             TTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEEECTTCEEECTTSSEEEEEEEEEEECSSC
T ss_pred             CCCCCCccEEEECCCCCEEEEEECCCCeEEEEECCCCcEEEEEecCCCcccccceeeEEEcCCCcEEEEeecCCcceeee
Confidence            3445567899999999987 5667899999999999999988877654     345789999999888776         


Q ss_pred             ---CCCcEEEEECCCCeEEEEecCCCCeeEEEeecCCeEEEEECCCceeccc--cceeeeeee-----------------
Q 021399           72 ---ADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNS--AIHVKRIAR-----------------  129 (313)
Q Consensus        72 ---~D~~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~-----------------  129 (313)
                         .+..+.+||..+++....+.....+..+.+.++++.++.........+.  ......+..                 
T Consensus       110 ~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  189 (337)
T d1pbyb_         110 FEVQPTRVALYDAETLSRRKAFEAPRQITMLAWARDGSKLYGLGRDLHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVW  189 (337)
T ss_dssp             EEECCCEEEEEETTTTEEEEEEECCSSCCCEEECTTSSCEEEESSSEEEEETTTTEEEEEECSTTTTTTTBCCCBCCCCC
T ss_pred             ccccccceeeccccCCeEEEeccccCCceEEEEcCCCCEEEEEcCCcceeeeecCcEEEEeecCCccccceecCCcceee
Confidence               4678999999999888777766666777888876655544322110000  000000000                 


Q ss_pred             ----------------CCCC-----------------CCCc-eEEEecCCCCceEEEEEccCCCEEEEeeCCCeEEEEEC
Q 021399          130 ----------------DPAD-----------------QGGE-SVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDT  175 (313)
Q Consensus       130 ----------------~~~~-----------------~~~~-~~~~~~~~~~~i~~~~~~~~~~~i~t~~~d~~i~lwd~  175 (313)
                                      ....                 ..+. .......+........++|++.+++.+  ++.|++||+
T Consensus       190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~i~v~d~  267 (337)
T d1pbyb_         190 NQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAFGA--YNVLESFDL  267 (337)
T ss_dssp             CCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECTTSSEEEEE--ESEEEEEET
T ss_pred             ccccccceeeeeeeeeeeccceeeecccCccEEEEEcCCCcEEEEEecCCCcceEEEEecccceEEEEc--cccEEEEEC
Confidence                            0000                 0000 011122233344556677877776654  588999999


Q ss_pred             CCCceeeecccccCceeceEEEEECCCCCEEEEeeCCCcEEEEECCCCcEEEEEec
Q 021399          176 ETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVT  231 (313)
Q Consensus       176 ~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~  231 (313)
                      .+++.+.++.    +...+.+++|+|||++|++++.|++|++||.++++.+.++..
T Consensus       268 ~~~~~~~~~~----~~~~~~~~~~s~dG~~l~v~~~~~~i~v~D~~t~~~v~~i~~  319 (337)
T d1pbyb_         268 EKNASIKRVP----LPHSYYSVNVSTDGSTVWLGGALGDLAAYDAETLEKKGQVDL  319 (337)
T ss_dssp             TTTEEEEEEE----CSSCCCEEEECTTSCEEEEESBSSEEEEEETTTCCEEEEEEC
T ss_pred             CCCcEEEEEc----CCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCcEEEEEEC
Confidence            9998887664    455788999999999999999999999999999999988753

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=99.83  E-value=4.5e-19  Score=148.78  Aligned_cols=253  Identities=14%  Similarity=0.059  Sum_probs=157.9

Q ss_pred             EEEccCCCEEEEeeCCCCeEEEeCCCCcEEEEec-CCCCceEEEEECCCCCeE-EEeeCCCcEEEEECCCCeEEEEecCC
Q 021399           16 LKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYR-GHNGAVWCCDVSRDSMTL-ITGSADQTAKLWNVETGAQLFTFNFD   93 (313)
Q Consensus        16 ~~fs~~g~~l~s~s~d~~i~iw~~~~~~~~~~~~-~H~~~V~~~~~~~~~~~l-~s~s~D~~v~vWd~~~~~~~~~~~~~   93 (313)
                      ++|++++++|++++.|+.|.+||+++++.+++++ .|...+.+++|+|||+.+ ++++.++.|++||+.+++.+......
T Consensus         2 ~a~~~~~~~l~~~~~~~~v~v~D~~t~~~~~t~~~~~~~~p~~l~~spDG~~l~v~~~~~~~v~~~d~~t~~~~~~~~~~   81 (346)
T d1jmxb_           2 PALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLS   81 (346)
T ss_dssp             CCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEESC
T ss_pred             ccCCCCCcEEEEEcCCCEEEEEECCCCCEEEEEEcCCCCCcceEEECCCCCEEEEEECCCCcEEEEeCccCeeeeeeccc
Confidence            4789999999999999999999999999999987 456678899999999876 56668999999999999887766432


Q ss_pred             C-------CeeEEEeecCCeEEEEECCCc-ee------ccccceeeeee-----------eCCCC------CCCceE---
Q 021399           94 S-------PARSVDFAVGDKLAVITTDPF-ME------LNSAIHVKRIA-----------RDPAD------QGGESV---  139 (313)
Q Consensus        94 ~-------~~~~~~~~~~~~~~~~~~~~~-~~------~~~~~~~~~~~-----------~~~~~------~~~~~~---  139 (313)
                      .       ....+.++++++.+.+..... ..      ........+..           ..+..      .....+   
T Consensus        82 ~~~~~~~~~~~~v~~s~DG~~l~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (346)
T d1jmxb_          82 SVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGSLYVA  161 (346)
T ss_dssp             CSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECCSSCCCEEECTTSCEEEE
T ss_pred             ccccccCCceEEEEEecCCCEEEEEecCCcceeeeeccCcceEEEEecccceeeeEEEeeeccCceEEEEecCCCEEEEe
Confidence            2       234567777765554432110 00      00000000000           00000      000000   


Q ss_pred             ----EEecCCCC----------ceEEEEEccCCCE--------------------------EEEeeCCCeEEEEECCCCc
Q 021399          140 ----LILKGPQG----------RINRAVWGPLNRT--------------------------IISAGEDAIVRIWDTETGK  179 (313)
Q Consensus       140 ----~~~~~~~~----------~i~~~~~~~~~~~--------------------------i~t~~~d~~i~lwd~~~~~  179 (313)
                          ..+....+          ....+.++|++..                          ++++..+..+.+||..++.
T Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  241 (346)
T d1jmxb_         162 GPDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGK  241 (346)
T ss_dssp             SSSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETTTCC
T ss_pred             CCcceEEEccCCCEEEEEecCCCccceEEeccccEEEEEecCCCceEeeeeeeeeccCceeEeeccCCceEEEEECCCCc
Confidence                00110011          1111223333321                          1223334556777776665


Q ss_pred             eeeecccccCceeceEEEEECCCCCEEEEeeCCCcEEEEECCCCcEEEEEecCCceeEEEeccCCCEEEEcccccCceeE
Q 021399          180 LLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTERPVNAVTMSPLLDHVVLGGGQDASAVT  259 (313)
Q Consensus       180 ~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~  259 (313)
                      ......  ..|...+..+.+++++.+++.... +.|++||+.+++.+..+.....+.+++|+|++..+++++. + +.  
T Consensus       242 ~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~-~~v~v~d~~~~~~~~~~~~~~~~~~va~s~DG~~l~v~~~-d-~~--  314 (346)
T d1jmxb_         242 THTQEF--ADLTELYFTGLRSPKDPNQIYGVL-NRLAKYDLKQRKLIKAANLDHTYYCVAFDKKGDKLYLGGT-F-ND--  314 (346)
T ss_dssp             EEEEEE--EECSSCEEEEEECSSCTTEEEEEE-SEEEEEETTTTEEEEEEECSSCCCEEEECSSSSCEEEESB-S-SE--
T ss_pred             eEEEEe--ecccceeEEEEEeCCCCEEEEecC-CeEEEEECCCCcEEEEEcCCCCEEEEEEcCCCCEEEEEeC-C-Cc--
Confidence            443221  235667788888888888877664 5799999999999998887778999999999999988753 3 23  


Q ss_pred             eeccCCCceeeeeeehhhhhhhcccc
Q 021399          260 TTDHRAGKFEAKFFDKILQEEIGGVK  285 (313)
Q Consensus       260 ~~~~~~~~~~~~~~~~~~~~~~~~~~  285 (313)
                                +++||..+.+.++.+.
T Consensus       315 ----------v~v~D~~t~~~i~~i~  330 (346)
T d1jmxb_         315 ----------LAVFNPDTLEKVKNIK  330 (346)
T ss_dssp             ----------EEEEETTTTEEEEEEE
T ss_pred             ----------EEEEECccCCEEEEEE
Confidence                      3455655555554444

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=99.79  E-value=8.5e-17  Score=136.73  Aligned_cols=266  Identities=8%  Similarity=-0.080  Sum_probs=161.8

Q ss_pred             cccccccceeEEEEccCCCEEEEee-----CCCCeEEEeCCCCcEEEEecCCCCceEEEEECCCCCeEEEee--------
Q 021399            5 LMKGHERPLTYLKYNKDGDLLFSCA-----KDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGS--------   71 (313)
Q Consensus         5 ~l~~h~~~v~~~~fs~~g~~l~s~s-----~d~~i~iw~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s--------   71 (313)
                      -...+..++..++++|||++++...     .++.|.+||.++++.+.++..+...  .++|+|||+++++++        
T Consensus        15 a~~~~~~p~~~~a~spdg~~~~~~~~~~~~~~~~v~v~D~~tg~~~~~~~~~~~~--~~a~SpDG~~l~va~~~~~~~~~   92 (373)
T d2madh_          15 AAGAADGPTNDEAPGADGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVNGGFLP--NPVAAHSGSEFALASTSFSRIAK   92 (373)
T ss_pred             hcccCCCCccccccCCCCCEEEEEcccccCCCceEEEEECCCCCEEEEEeCCCCc--cEEEcCCCCEEEEEeecCCcccc
Confidence            3456888899999999999987652     3457889999999999999877654  689999999988875        


Q ss_pred             --CCCcEEEEECCCCeEEEEecCCC--------CeeEEEeecCCeEEEEE-CCCceeccccceeeeeeeCCCCCCCceEE
Q 021399           72 --ADQTAKLWNVETGAQLFTFNFDS--------PARSVDFAVGDKLAVIT-TDPFMELNSAIHVKRIARDPADQGGESVL  140 (313)
Q Consensus        72 --~D~~v~vWd~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  140 (313)
                        .++.|++||+.+++.+.......        ....+.+.++++...+. .++.    .....++..      ..... 
T Consensus        93 ~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~----~~~~~~~~~------~~~~~-  161 (373)
T d2madh_          93 GKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAG----PAVGLVVQG------GSSDD-  161 (373)
T ss_pred             cccceEEEEEECCCCcEEEEEecCCcceeEeccCCCcEEEEeCCCcEEEEEEcCC----CceEEeecc------CCeEE-
Confidence              46789999999998876654321        12334455544433221 1110    000000000      00000 


Q ss_pred             EecCCCCceEEEEEccCCCE-EEEeeCCCeEEEEECCCCceeeeccc---------------------------------
Q 021399          141 ILKGPQGRINRAVWGPLNRT-IISAGEDAIVRIWDTETGKLLKESDK---------------------------------  186 (313)
Q Consensus       141 ~~~~~~~~i~~~~~~~~~~~-i~t~~~d~~i~lwd~~~~~~~~~~~~---------------------------------  186 (313)
                         .+......+.++|+++. +++.+.|+.+.+||...+........                                 
T Consensus       162 ---~~~~~~~~~~~s~~g~~~~v~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~  238 (373)
T d2madh_         162 ---QLLSSPTCYHIHPGAPSTFYLLCAQGGLAKTDHAGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPVYSGKILQ  238 (373)
T ss_pred             ---EEeccceeEEEecCCCcEEEEEcCCCeEEEEEcCCceeeEEEeeeccccCccceeeeEEECCCceEEEecCCceEEE
Confidence               11112233445555433 24455555555555443332211100                                 


Q ss_pred             -------------ccCce----------eceEEEEECCCCCE----------EEEeeCCCcEEEEECCCCcEEEEEecCC
Q 021399          187 -------------ETGHK----------KTITSLAKAADGSH----------FLTGSLDKSAKLWDARTLELIKTYVTER  233 (313)
Q Consensus       187 -------------~~~h~----------~~v~~~~~s~~~~~----------l~s~s~dg~i~iwd~~~~~~~~~~~~~~  233 (313)
                                   ...+.          .....+++++++..          +++...++.+.+||..+++.+..+....
T Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~~d~~t~~~~~~~~~~~  318 (373)
T d2madh_         239 ADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQISLGH  318 (373)
T ss_pred             EEcCCCeEEEEEeeccccCcEEeeeeccCcceeeEEecCCCeEEEecCCCceEEeecCCCeEEEEECCCCcEEEEecCCC
Confidence                         00000          11122344555544          3455667789999999999999888778


Q ss_pred             ceeEEEeccCCCEEEE-cccccCceeEeeccCCCceeeeeeehhhhhhhccccccccceeEEEECCC
Q 021399          234 PVNAVTMSPLLDHVVL-GGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPD  299 (313)
Q Consensus       234 ~~~~~~~~p~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~fspd  299 (313)
                      .+..++|+|++..++. +++.+ +            .+++||..+++.++.+..|....+.|++.++
T Consensus       319 ~~~~~a~spDG~~~l~vt~~~d-~------------~v~v~D~~tg~~~~~~~~~g~~P~~l~~~~~  372 (373)
T d2madh_         319 DVDAISVAQDGGPDLYALSAGT-E------------VLHIYDAGAGDQDQSTVELGSGPQVLSVMNE  372 (373)
T ss_pred             CeeEEEECCCCCEEEEEEeCCC-C------------eEEEEECCCCCEEEEECCCCCCCcEEEEecC
Confidence            8999999999987543 43333 2            3467777778888888878778888887665

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.75  E-value=1.9e-16  Score=133.43  Aligned_cols=258  Identities=11%  Similarity=0.011  Sum_probs=163.8

Q ss_pred             eEEEEccCCCEEEEee----------CCCCeEEEeCCCCcEEEEecCCCCc-------eEEEEECCCCCeEEEe--eCCC
Q 021399           14 TYLKYNKDGDLLFSCA----------KDHTPTVWFADNGERLGTYRGHNGA-------VWCCDVSRDSMTLITG--SADQ   74 (313)
Q Consensus        14 ~~~~fs~~g~~l~s~s----------~d~~i~iw~~~~~~~~~~~~~H~~~-------V~~~~~~~~~~~l~s~--s~D~   74 (313)
                      ..++|||||++|+.++          .|+.|++||..+++.+.++..+...       ...++|+|+++.++.+  +.+.
T Consensus        50 ~~~a~SpDg~~l~v~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~  129 (355)
T d2bbkh_          50 PNPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAP  129 (355)
T ss_dssp             CEEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSC
T ss_pred             CceEEcCCCCEEEEEeCCCccccccCCCCEEEEEECCCCCEEEEEecCCcceeecCCCCceEEEecCCCeeEEecCCCCc
Confidence            4689999999888653          4789999999999988877644322       2457899999977665  4567


Q ss_pred             cEEEEECCCCeEEEEecCCCCe--------eEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCC
Q 021399           75 TAKLWNVETGAQLFTFNFDSPA--------RSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQ  146 (313)
Q Consensus        75 ~v~vWd~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  146 (313)
                      .+.+|+..+++.+..+......        ..+.+.++.+...+.....    ...........           ...+.
T Consensus       130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~~~~v~~~~~----~~~~~~~~~~~-----------~~~~~  194 (355)
T d2bbkh_         130 AVGVVDLEGKAFKRMLDVPDCYHIFPTAPDTFFMHCRDGSLAKVAFGTE----GTPEITHTEVF-----------HPEDE  194 (355)
T ss_dssp             EEEEEETTTTEEEEEEECCSEEEEEEEETTEEEEEETTSCEEEEECCSS----SCCEEEECCCC-----------SCTTS
T ss_pred             eeeeeecCCCcEeeEEecCCcceEeecCCcceEEEcCCCCEEEEEecCC----CeEEEEecccc-----------cceec
Confidence            8999999999877665432211        1223333333322211100    00000000000           01122


Q ss_pred             CceEEEEEccCCCEEEEeeCCCeEEEEECCCCceeeecccccCc----------eeceEEEEECCCCCEEEEeeCC----
Q 021399          147 GRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGH----------KKTITSLAKAADGSHFLTGSLD----  212 (313)
Q Consensus       147 ~~i~~~~~~~~~~~i~t~~~d~~i~lwd~~~~~~~~~~~~~~~h----------~~~v~~~~~s~~~~~l~s~s~d----  212 (313)
                      ..+....+.+.+..++.++.++.+++|+...+.... +.....+          ......+++++++..++..+.+    
T Consensus       195 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~~~~~~~~~~~~~~p~~~~~~~~~~d~~~~~~~~~~~~~~  273 (355)
T d2bbkh_         195 FLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKF-LPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEW  273 (355)
T ss_dssp             CBCSCCEEETTTTEEEEEBTTSEEEEEECTTSSCEE-CCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTT
T ss_pred             ceeeeccccCCCCeEEEecCCCeEEEEecCCCcEEE-EeccCCcccceEeeeeeccceEEEEEeCCCCeEEEEeccCCce
Confidence            233445567777889999999999999998765321 1111111          1223457889999988776544    


Q ss_pred             ------CcEEEEECCCCcEEEEEecCCceeEEEeccCCCEE-EEcccccCceeEeeccCCCceeeeeeehhhhhhhcccc
Q 021399          213 ------KSAKLWDARTLELIKTYVTERPVNAVTMSPLLDHV-VLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVK  285 (313)
Q Consensus       213 ------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~p~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  285 (313)
                            ..|.+||.++++.+..+.....+.+++|+|++..+ +++++.+ +.            +++||..+++.+..+.
T Consensus       274 ~~~~~~~~v~v~d~~t~~~~~~~~~~~~~~~~a~spDG~~~l~v~~~~d-~~------------i~v~D~~tg~~~~~i~  340 (355)
T d2bbkh_         274 RHKTASRFVVVLDAKTGERLAKFEMGHEIDSINVSQDEKPLLYALSTGD-KT------------LYIHDAESGEELRSVN  340 (355)
T ss_dssp             CTTSCEEEEEEEETTTCCEEEEEEEEEEECEEEECCSSSCEEEEEETTT-TE------------EEEEETTTCCEEEEEC
T ss_pred             eecCCCCeEEEEeCCCCcEEEEecCCCCEEEEEEcCCCCeEEEEEECCC-CE------------EEEEECCCCCEEEEEe
Confidence                  36999999999999888777778999999999864 4443333 33            4556666666666666


Q ss_pred             ccccceeEEEECCCC
Q 021399          286 GHFGPINALAFNPDG  300 (313)
Q Consensus       286 ~h~~~V~~~~fspdg  300 (313)
                      ++...-..|.+.++|
T Consensus       341 ~~G~~p~~i~~~d~~  355 (355)
T d2bbkh_         341 QLGHGPQVITTADMG  355 (355)
T ss_dssp             CCCSSCCEEECCCCC
T ss_pred             CcCCCccEEEeCCCC
Confidence            666666677776654

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=99.73  E-value=1.3e-15  Score=126.93  Aligned_cols=263  Identities=11%  Similarity=0.078  Sum_probs=155.6

Q ss_pred             EEEEeeCCCCeEEEeCCCCcEEEEe--cCCCCceEEEEECCCCCeEEE-eeCCCcEEEEECCCCeE----EEEecCCCCe
Q 021399           24 LLFSCAKDHTPTVWFADNGERLGTY--RGHNGAVWCCDVSRDSMTLIT-GSADQTAKLWNVETGAQ----LFTFNFDSPA   96 (313)
Q Consensus        24 ~l~s~s~d~~i~iw~~~~~~~~~~~--~~H~~~V~~~~~~~~~~~l~s-~s~D~~v~vWd~~~~~~----~~~~~~~~~~   96 (313)
                      .+++++.|++|++|+++....+..+  ..|.+.|..++|+|||++|++ +..|+.|++|++.....    .........+
T Consensus         6 v~v~~~~~~~I~v~~~~~~~~l~~~~~~~~~~~v~~la~spDG~~L~v~~~~d~~i~~~~i~~~~~~~~~~~~~~~~~~p   85 (333)
T d1ri6a_           6 VYIASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPGSL   85 (333)
T ss_dssp             EEEEEGGGTEEEEEEECTTSCEEEEEEEECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSSCC
T ss_pred             EEEECCCCCcEEEEEEcCCCCeEEEEEEcCCCCEeEEEEeCCCCEEEEEECCCCeEEEEEEeCCCCcEEEeeecccCCCc
Confidence            4678889999999998765433333  368899999999999998754 45689999999876532    2222344556


Q ss_pred             eEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEccCCCEEEEee-CCCeEEEEEC
Q 021399           97 RSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAG-EDAIVRIWDT  175 (313)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~t~~-~d~~i~lwd~  175 (313)
                      ..+.++++++.+++....-    ..+..+....    ...........+...+..+.++|++++++.++ .+..|.+|+.
T Consensus        86 ~~l~~spDg~~l~v~~~~~----~~v~~~~~~~----~~~~~~~~~~~~~~~~~~v~~s~d~~~~~~~~~~~~~i~~~~~  157 (333)
T d1ri6a_          86 THISTDHQGQFVFVGSYNA----GNVSVTRLED----GLPVGVVDVVEGLDGCHSANISPDNRTLWVPALKQDRICLFTV  157 (333)
T ss_dssp             SEEEECTTSSEEEEEETTT----TEEEEEEEET----TEEEEEEEEECCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEE
T ss_pred             eEEEEcCCCCEEeecccCC----Cceeeecccc----ccceecccccCCCccceEEEeeecceeeeccccccceeeEEEe
Confidence            6788999877665543211    1111111110    01112223344556677888999999887776 4567999997


Q ss_pred             CCCceeeec---ccccCceeceEEEEECCCCCEEEEee-CCCcEEEEECCCCc----EEEEEec-------CCceeEEEe
Q 021399          176 ETGKLLKES---DKETGHKKTITSLAKAADGSHFLTGS-LDKSAKLWDARTLE----LIKTYVT-------ERPVNAVTM  240 (313)
Q Consensus       176 ~~~~~~~~~---~~~~~h~~~v~~~~~s~~~~~l~s~s-~dg~i~iwd~~~~~----~~~~~~~-------~~~~~~~~~  240 (313)
                      .........   ............++|++++..++... ..+...+|+.....    .......       ......+++
T Consensus       158 ~~~~~~~~~~~~~~~~~~g~~p~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  237 (333)
T d1ri6a_         158 SDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHI  237 (333)
T ss_dssp             CTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEE
T ss_pred             ccCCcceeeeceeeeeecCCCccEEEEeccceeEEeeccccCceEEEeecccccceeeeeeeeeeecCCCccccceeEEE
Confidence            654322211   11122345568899999999876655 45667888765422    2222211       123556788


Q ss_pred             ccCCCEEEEcccccCceeEeeccCCCceeeeeeehhhhhhhccccccccceeEEEECCCCCeeE
Q 021399          241 SPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKRYG  304 (313)
Q Consensus       241 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~fspdgk~~~  304 (313)
                      +|+++.++++...+.. +..++..........         .....+...+..++||||||++.
T Consensus       238 s~d~~~~~~~~~~~~~-~~~~~~~~~~~~~~~---------~~~~~~~~~p~~~a~spDGk~l~  291 (333)
T d1ri6a_         238 TPDGRHLYACDRTASL-ITVFSVSEDGSVLSK---------EGFQPTETQPRGFNVDHSGKYLI  291 (333)
T ss_dssp             CTTSSEEEEEETTTTE-EEEEEECTTSCCEEE---------EEEEECSSSCCCEEECTTSSEEE
T ss_pred             ecccCceeeecccCCe-EEEEEEcCCCCEEEE---------EEEeCCCCCeeEEEEeCCCCEEE
Confidence            9999988776543322 222211111000000         11112345678899999999864

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=99.73  E-value=6.9e-16  Score=129.00  Aligned_cols=219  Identities=13%  Similarity=0.070  Sum_probs=137.8

Q ss_pred             ccccceeEEEEccCCCEE-EEeeCCCCeEEEeCCCCcEEEEecCCC------CceEEEEECCCCCeEEEee---------
Q 021399            8 GHERPLTYLKYNKDGDLL-FSCAKDHTPTVWFADNGERLGTYRGHN------GAVWCCDVSRDSMTLITGS---------   71 (313)
Q Consensus         8 ~h~~~v~~~~fs~~g~~l-~s~s~d~~i~iw~~~~~~~~~~~~~H~------~~V~~~~~~~~~~~l~s~s---------   71 (313)
                      .|...+.+++|+|||+++ ++++.++.|++||+.+++.+.++....      ..+..++|+|||+.++.++         
T Consensus        37 ~~~~~p~~l~~spDG~~l~v~~~~~~~v~~~d~~t~~~~~~~~~~~~~~~~~~~~~~v~~s~DG~~l~v~~~~~~~~~~~  116 (346)
T d1jmxb_          37 PDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDH  116 (346)
T ss_dssp             SSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSC
T ss_pred             CCCCCcceEEECCCCCEEEEEECCCCcEEEEeCccCeeeeeecccccccccCCceEEEEEecCCCEEEEEecCCcceeee
Confidence            345567899999999987 555678999999999999887775432      2345789999999887765         


Q ss_pred             ---CCCcEEEEECCCCeEEE---EecCCCCeeEEEeecCCeEEEEECCCc-eeccccceeeee-----------------
Q 021399           72 ---ADQTAKLWNVETGAQLF---TFNFDSPARSVDFAVGDKLAVITTDPF-MELNSAIHVKRI-----------------  127 (313)
Q Consensus        72 ---~D~~v~vWd~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-----------------  127 (313)
                         .++.+.+|+..+++...   ..........+.+.++..+.+...+.. +..........+                 
T Consensus       117 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  196 (346)
T d1jmxb_         117 YVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGSLYVAGPDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLY  196 (346)
T ss_dssp             EEECCCEEEEEEGGGGGGBCCSEEEECCSSCCCEEECTTSCEEEESSSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCC
T ss_pred             eccCcceEEEEecccceeeeEEEeeeccCceEEEEecCCCEEEEeCCcceEEEccCCCEEEEEecCCCccceEEeccccE
Confidence               46788899887654321   111111122222333333222211000 000000000000                 


Q ss_pred             ----------------e-e-------------------CCCCCCCceEEEecCCCCceEEEEEccCCCEEEEeeCCCeEE
Q 021399          128 ----------------A-R-------------------DPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVR  171 (313)
Q Consensus       128 ----------------~-~-------------------~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~t~~~d~~i~  171 (313)
                                      . .                   ...............+...+....+++.+..++.... +.|+
T Consensus       197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~  275 (346)
T d1jmxb_         197 FWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGVL-NRLA  275 (346)
T ss_dssp             CCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEEE-SEEE
T ss_pred             EEEEecCCCceEeeeeeeeeccCceeEeeccCCceEEEEECCCCceEEEEeecccceeEEEEEeCCCCEEEEecC-CeEE
Confidence                            0 0                   0000001111222334555667778888887776664 5799


Q ss_pred             EEECCCCceeeecccccCceeceEEEEECCCCCEEEEeeCCCcEEEEECCCCcEEEEEec
Q 021399          172 IWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVT  231 (313)
Q Consensus       172 lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~  231 (313)
                      +||..+++.+..+.    +...+.+++|+|||+++++++.|+.|++||+++++.+.++..
T Consensus       276 v~d~~~~~~~~~~~----~~~~~~~va~s~DG~~l~v~~~d~~v~v~D~~t~~~i~~i~~  331 (346)
T d1jmxb_         276 KYDLKQRKLIKAAN----LDHTYYCVAFDKKGDKLYLGGTFNDLAVFNPDTLEKVKNIKL  331 (346)
T ss_dssp             EEETTTTEEEEEEE----CSSCCCEEEECSSSSCEEEESBSSEEEEEETTTTEEEEEEEC
T ss_pred             EEECCCCcEEEEEc----CCCCEEEEEEcCCCCEEEEEeCCCcEEEEECccCCEEEEEEC
Confidence            99999998877654    234688999999999999999999999999999999998864

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=99.69  E-value=3.9e-14  Score=117.71  Aligned_cols=243  Identities=9%  Similarity=0.081  Sum_probs=146.3

Q ss_pred             ccccceeEEEEccCCCEEEEee-CCCCeEEEeCCCCcEEEEe---cCCCCceEEEEECCCCCeEEEeeC-CCcEEEEECC
Q 021399            8 GHERPLTYLKYNKDGDLLFSCA-KDHTPTVWFADNGERLGTY---RGHNGAVWCCDVSRDSMTLITGSA-DQTAKLWNVE   82 (313)
Q Consensus         8 ~h~~~v~~~~fs~~g~~l~s~s-~d~~i~iw~~~~~~~~~~~---~~H~~~V~~~~~~~~~~~l~s~s~-D~~v~vWd~~   82 (313)
                      .|.+.+..++|||||++|++++ .|+.|++|++.......++   ..+...+..++|+|||+++++++. ++++.+|+..
T Consensus        34 ~~~~~v~~la~spDG~~L~v~~~~d~~i~~~~i~~~~~~~~~~~~~~~~~~p~~l~~spDg~~l~v~~~~~~~v~~~~~~  113 (333)
T d1ri6a_          34 DVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPGSLTHISTDHQGQFVFVGSYNAGNVSVTRLE  113 (333)
T ss_dssp             ECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSSCCSEEEECTTSSEEEEEETTTTEEEEEEEE
T ss_pred             cCCCCEeEEEEeCCCCEEEEEECCCCeEEEEEEeCCCCcEEEeeecccCCCceEEEEcCCCCEEeecccCCCceeeeccc
Confidence            6778899999999999996554 5899999998866533232   234456778999999998888874 7789999987


Q ss_pred             CCeEEEEe---cCCCCeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEccCCC
Q 021399           83 TGAQLFTF---NFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNR  159 (313)
Q Consensus        83 ~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~  159 (313)
                      ........   ........+.+.++...........    ..+..++.........................+.|++.+.
T Consensus       114 ~~~~~~~~~~~~~~~~~~~v~~s~d~~~~~~~~~~~----~~i~~~~~~~~~~~~~~~~~~~~~~~g~~p~~i~~~~~~~  189 (333)
T d1ri6a_         114 DGLPVGVVDVVEGLDGCHSANISPDNRTLWVPALKQ----DRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQ  189 (333)
T ss_dssp             TTEEEEEEEEECCCTTBCCCEECTTSSEEEEEEGGG----TEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSS
T ss_pred             cccceecccccCCCccceEEEeeecceeeecccccc----ceeeEEEeccCCcceeeeceeeeeecCCCccEEEEeccce
Confidence            66544332   2334556677777765544332110    0111111110000000000011112233456788998887


Q ss_pred             EEEEe-eCCCeEEEEECCCCce----eeec---ccccCceeceEEEEECCCCCEEEEe-eCCCcEEEEECCCCcEEEEE-
Q 021399          160 TIISA-GEDAIVRIWDTETGKL----LKES---DKETGHKKTITSLAKAADGSHFLTG-SLDKSAKLWDARTLELIKTY-  229 (313)
Q Consensus       160 ~i~t~-~~d~~i~lwd~~~~~~----~~~~---~~~~~h~~~v~~~~~s~~~~~l~s~-s~dg~i~iwd~~~~~~~~~~-  229 (313)
                      .+... ...+...+|+......    ....   ............+++++++++++.. ..++.+.+|++......... 
T Consensus       190 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  269 (333)
T d1ri6a_         190 YAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKE  269 (333)
T ss_dssp             EEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEE
T ss_pred             eEEeeccccCceEEEeecccccceeeeeeeeeeecCCCccccceeEEEecccCceeeecccCCeEEEEEEcCCCCEEEEE
Confidence            76554 4566778887543221    1111   1111233456778899999976655 45778999987754322222 


Q ss_pred             ---ecCCceeEEEeccCCCEEEEccccc
Q 021399          230 ---VTERPVNAVTMSPLLDHVVLGGGQD  254 (313)
Q Consensus       230 ---~~~~~~~~~~~~p~~~~~~~~~~~~  254 (313)
                         .....+..++|+|+++++++++..+
T Consensus       270 ~~~~~~~~p~~~a~spDGk~l~va~~~~  297 (333)
T d1ri6a_         270 GFQPTETQPRGFNVDHSGKYLIAAGQKS  297 (333)
T ss_dssp             EEEECSSSCCCEEECTTSSEEEEECTTT
T ss_pred             EEeCCCCCeeEEEEeCCCCEEEEEECCC
Confidence               2334567899999999988876543

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=99.68  E-value=3.5e-14  Score=120.28  Aligned_cols=79  Identities=10%  Similarity=0.072  Sum_probs=62.3

Q ss_pred             CEEEEeeCCCeEEEEECCCCceeeecccccCceeceEEEEECCCCCE--EEEeeCCCcEEEEECCCCcEEEEEe-cCCce
Q 021399          159 RTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSH--FLTGSLDKSAKLWDARTLELIKTYV-TERPV  235 (313)
Q Consensus       159 ~~i~t~~~d~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~--l~s~s~dg~i~iwd~~~~~~~~~~~-~~~~~  235 (313)
                      ..+++...++.+.+||..+++.+..+.    +...+.+++|+|||+.  +++++.|++|++||+++++.+.++. .....
T Consensus       289 ~~~~~~~~~~~v~~~d~~t~~~~~~~~----~~~~~~~~a~spDG~~~l~vt~~~d~~v~v~D~~tg~~~~~~~~~g~~P  364 (373)
T d2madh_         289 SAWKLHAAAKEVTSVTGLVGQTSSQIS----LGHDVDAISVAQDGGPDLYALSAGTEVLHIYDAGAGDQDQSTVELGSGP  364 (373)
T ss_pred             ceEEeecCCCeEEEEECCCCcEEEEec----CCCCeeEEEECCCCCEEEEEEeCCCCeEEEEECCCCCEEEEECCCCCCC
Confidence            445566777889999999998877653    4567899999999984  4688999999999999999999886 34445


Q ss_pred             eEEEec
Q 021399          236 NAVTMS  241 (313)
Q Consensus       236 ~~~~~~  241 (313)
                      ..+++.
T Consensus       365 ~~l~~~  370 (373)
T d2madh_         365 QVLSVM  370 (373)
T ss_pred             cEEEEe
Confidence            555543

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.64  E-value=4.1e-14  Score=118.87  Aligned_cols=267  Identities=13%  Similarity=0.041  Sum_probs=155.6

Q ss_pred             EEEccCCCEEEEee-----CCCCeEEEeCCCCcEEEEecCCCCceEEEEECCCCCeEEEe----------eCCCcEEEEE
Q 021399           16 LKYNKDGDLLFSCA-----KDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITG----------SADQTAKLWN   80 (313)
Q Consensus        16 ~~fs~~g~~l~s~s-----~d~~i~iw~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~----------s~D~~v~vWd   80 (313)
                      .+-+|||++++...     .+..|.+||.++++.+.++..+...  .++|+|||++++.+          +.|+.|++||
T Consensus         7 ~a~spdg~~~~v~~~~~~~~~~~v~v~D~~tg~~~~~~~~g~~~--~~a~SpDg~~l~v~~~~~~~~~~g~~d~~v~v~D   84 (355)
T d2bbkh_           7 EAPAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFLP--NPVVADDGSFIAHASTVFSRIARGERTDYVEVFD   84 (355)
T ss_dssp             CCCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEEC
T ss_pred             EeeCCCCCEEEEEecccCCCcCeEEEEECCCCcEEEEEECCCCC--ceEEcCCCCEEEEEeCCCccccccCCCCEEEEEE
Confidence            34579999987753     4567999999999999999876554  68999999987754          4588999999


Q ss_pred             CCCCeEEEEecC--------CCCeeEEEeecCCeEEEEEC-CCceeccccceeeeeeeCCCCCCCceEEEecCCCC----
Q 021399           81 VETGAQLFTFNF--------DSPARSVDFAVGDKLAVITT-DPFMELNSAIHVKRIARDPADQGGESVLILKGPQG----  147 (313)
Q Consensus        81 ~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----  147 (313)
                      +.+++.+.....        ......+.|++++..+.+.. ....    ....++.      ..+..+..+..+..    
T Consensus        85 ~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~----~~~~~~~------~~~~~~~~~~~~~~~~~~  154 (355)
T d2bbkh_          85 PVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAP----AVGVVDL------EGKAFKRMLDVPDCYHIF  154 (355)
T ss_dssp             TTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSC----EEEEEET------TTTEEEEEEECCSEEEEE
T ss_pred             CCCCCEEEEEecCCcceeecCCCCceEEEecCCCeeEEecCCCCc----eeeeeec------CCCcEeeEEecCCcceEe
Confidence            999987765432        11234566777665544321 1100    0011110      11222222222211    


Q ss_pred             ---ceEEEEEccCCCEEEEe-eCCCeEEEEECCCCceeeecccccCceeceEEEEECCCCCEEEEeeCCCcEEEEECCCC
Q 021399          148 ---RINRAVWGPLNRTIISA-GEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTL  223 (313)
Q Consensus       148 ---~i~~~~~~~~~~~i~t~-~~d~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~dg~i~iwd~~~~  223 (313)
                         ....+.+++++..++.. ..++.+.+++.....        ..+...+....+++++..++.++.++.+++|++..+
T Consensus       155 ~~~~~~~~~~~~dg~~~~v~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~  226 (355)
T d2bbkh_         155 PTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFH--------PEDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSG  226 (355)
T ss_dssp             EEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCS--------CTTSCBCSCCEEETTTTEEEEEBTTSEEEEEECTTS
T ss_pred             ecCCcceEEEcCCCCEEEEEecCCCeEEEEeccccc--------ceecceeeeccccCCCCeEEEecCCCeEEEEecCCC
Confidence               11223344444333322 223333333332211        223444555677788889999999999999999887


Q ss_pred             cEEEE--Eec-----------CCceeEEEeccCCCEEEEcccccCceeEeeccCCCceeeeeeehhhhhhhccccccccc
Q 021399          224 ELIKT--YVT-----------ERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGP  290 (313)
Q Consensus       224 ~~~~~--~~~-----------~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~  290 (313)
                      .....  ...           +.....++++|++..++++.......+    ...+...+..||..+++.+..+. +...
T Consensus       227 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~d~~~~~~~~~~~~~~~----~~~~~~~v~v~d~~t~~~~~~~~-~~~~  301 (355)
T d2bbkh_         227 DAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWR----HKTASRFVVVLDAKTGERLAKFE-MGHE  301 (355)
T ss_dssp             SCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTC----TTSCEEEEEEEETTTCCEEEEEE-EEEE
T ss_pred             cEEEEeccCCcccceEeeeeeccceEEEEEeCCCCeEEEEeccCCcee----ecCCCCeEEEEeCCCCcEEEEec-CCCC
Confidence            54221  110           012345777888877766543221110    11122346677777776665554 4567


Q ss_pred             eeEEEECCCCCeeEEEE
Q 021399          291 INALAFNPDGKRYGFLL  307 (313)
Q Consensus       291 V~~~~fspdgk~~~~~~  307 (313)
                      +.+++||||||.+.|..
T Consensus       302 ~~~~a~spDG~~~l~v~  318 (355)
T d2bbkh_         302 IDSINVSQDEKPLLYAL  318 (355)
T ss_dssp             ECEEEECCSSSCEEEEE
T ss_pred             EEEEEEcCCCCeEEEEE
Confidence            89999999999866654

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.55  E-value=2e-12  Score=113.09  Aligned_cols=106  Identities=7%  Similarity=-0.068  Sum_probs=81.8

Q ss_pred             ccccccccceeEEEEccCCCEEEEeeC---------CCCeEEEeCCCCcEEEEecCCCCceEEEEECCCCCeEEEeeCCC
Q 021399            4 ILMKGHERPLTYLKYNKDGDLLFSCAK---------DHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQ   74 (313)
Q Consensus         4 ~~l~~h~~~v~~~~fs~~g~~l~s~s~---------d~~i~iw~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~   74 (313)
                      ..+..|...|.++.|||||++|+.++.         ++.+.|||+++++ +..+..|.+.+..+.|||||+.++. ..++
T Consensus        55 ~~~~~~~~~i~~~~~SpDg~~i~~~~~~~~~~r~s~~~~~~l~d~~~~~-~~~l~~~~~~~~~~~~SPDG~~ia~-~~~~  132 (470)
T d2bgra1          55 STFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQ-LITEERIPNNTQWVTWSPVGHKLAY-VWNN  132 (470)
T ss_dssp             TTTTTSSSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTE-ECCSSCCCTTEEEEEECSSTTCEEE-EETT
T ss_pred             hhhhhccCccceeEECCCCCEEEEEECCcceeeeccCceEEEEECCCCc-ccccccCCccccccccccCcceeeE-eecc
Confidence            356777889999999999999998854         5677899999886 4568889999999999999999888 4678


Q ss_pred             cEEEEECCCCeEEEEecCC-------------------CCeeEEEeecCCeEEEEE
Q 021399           75 TAKLWNVETGAQLFTFNFD-------------------SPARSVDFAVGDKLAVIT  111 (313)
Q Consensus        75 ~v~vWd~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~  111 (313)
                      .+.+|+..+++........                   .....+.|+|+++.++..
T Consensus       133 ~l~~~~~~~g~~~~~t~~~~~~~~~~g~~d~~~~~~~~~~~~~~~wSPDGk~ia~~  188 (470)
T d2bgra1         133 DIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYA  188 (470)
T ss_dssp             EEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEE
T ss_pred             cceEEECCCCceeeeeeccCCCcccccccceeeeeeecCCccccEECCCCCcccee
Confidence            8999999888765433211                   123456688877665553

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.51  E-value=7.6e-13  Score=112.07  Aligned_cols=231  Identities=8%  Similarity=-0.082  Sum_probs=133.4

Q ss_pred             EEEEccCCCEEEEee----------CCCCeEEEeCCCCcEEEEecCCCCc-------eEEEEECCCCCeEEEee-CCCcE
Q 021399           15 YLKYNKDGDLLFSCA----------KDHTPTVWFADNGERLGTYRGHNGA-------VWCCDVSRDSMTLITGS-ADQTA   76 (313)
Q Consensus        15 ~~~fs~~g~~l~s~s----------~d~~i~iw~~~~~~~~~~~~~H~~~-------V~~~~~~~~~~~l~s~s-~D~~v   76 (313)
                      .+.|+|||++|+..+          .|+.|++||..+++++..+..|...       ...++|+|||++++.+. .++.+
T Consensus        69 ~~a~spDg~~i~~~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~i~~p~~~~~~~g~~p~~~a~SpDGk~l~va~~~~~~v  148 (368)
T d1mdah_          69 LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAA  148 (368)
T ss_dssp             EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCE
T ss_pred             cceECCCCCEEEEEcccCccccccccCCeEEEEECCCCcEeeeecCCccceecccCCccceEECCCCCEEEEEeCCCCeE
Confidence            588999999998765          3678999999999998888655432       23589999999887775 57999


Q ss_pred             EEEECCCCeEEEEecCCCCe--------eEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCc
Q 021399           77 KLWNVETGAQLFTFNFDSPA--------RSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGR  148 (313)
Q Consensus        77 ~vWd~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  148 (313)
                      .+||+.+++.+.........        ..+.+++++.+.+......     ..... ...  .       .....+...
T Consensus       149 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~Dg~~~~~~~~~~-----~~~~~-~~~--~-------~~~~~~~~~  213 (368)
T d1mdah_         149 AGLSVPGASDDQLTKSASCFHIHPGAAATHYLGSCPASLAASDLAAA-----PAAAG-IVG--A-------QCTGAQNCS  213 (368)
T ss_dssp             EEEEETTTEEEEEEECSSCCCCEEEETTEEECCCCTTSCEEEECCSS-----CCCCE-ECC--C-------CSCTTSCBC
T ss_pred             EEEECCCCcEeEEeeccCcceEccCCCceEEEEcCCCCEEEEEecCC-----ceeee-eee--c-------ccccccccc
Confidence            99999999887765432211        1122222222222211100     00000 000  0       000111222


Q ss_pred             eEEEEEccCCCEEEEeeCCCeEEEEECCCCceeeeccc--c-------cCceeceEEEEECCCCCEEEEeeCC-------
Q 021399          149 INRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDK--E-------TGHKKTITSLAKAADGSHFLTGSLD-------  212 (313)
Q Consensus       149 i~~~~~~~~~~~i~t~~~d~~i~lwd~~~~~~~~~~~~--~-------~~h~~~v~~~~~s~~~~~l~s~s~d-------  212 (313)
                      .....+.+.+..+.+.  .+.+++++............  .       .........+++++++..++....+       
T Consensus       214 ~~~~~~~~~g~~~~~~--~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~v~~~~~~~~~~~  291 (368)
T d1mdah_         214 SQAAQANYPGMLVWAV--ASSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLA  291 (368)
T ss_dssp             SCCEEETTTTEEEECB--SSCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTS
T ss_pred             eeecccccCcEEEEec--CCCEEEEeecCCceEEEeecccccceeeeeeecCCCceeEEEcCCCCEEEEEecCCCceeec
Confidence            3344555555544433  34455555544332211100  0       0011223457788888877665332       


Q ss_pred             --CcEEEEECCCCcEEEEEecCCceeEEEeccCCCE-EEEcccccCceeEeecc
Q 021399          213 --KSAKLWDARTLELIKTYVTERPVNAVTMSPLLDH-VVLGGGQDASAVTTTDH  263 (313)
Q Consensus       213 --g~i~iwd~~~~~~~~~~~~~~~~~~~~~~p~~~~-~~~~~~~~~~~~~~~~~  263 (313)
                        ..|.+||.++++.+..+.....+..++|+|+++. +++++. .++.+.+||.
T Consensus       292 ~~~~v~v~D~~t~~~~~~~~~~~~~~~~a~spDG~~~ly~s~~-~~~~v~v~D~  344 (368)
T d1mdah_         292 AAENTSSVTASVGQTSGPISNGHDSDAIIAAQDGASDNYANSA-GTEVLDIYDA  344 (368)
T ss_dssp             CEEEEEEEESSSCCEEECCEEEEEECEEEECCSSSCEEEEEET-TTTEEEEEES
T ss_pred             CCceEEEEECCCCcEeEEecCCCceeEEEECCCCCEEEEEEeC-CCCeEEEEEC
Confidence              3588999999999988877777889999999975 444443 3333444443

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=99.38  E-value=1.3e-11  Score=105.30  Aligned_cols=271  Identities=12%  Similarity=0.011  Sum_probs=148.9

Q ss_pred             EEEEeeCCCCeEEEeCCCCcEEEEec------------------------------CCCCceEEEEECCCCCeEEE-eeC
Q 021399           24 LLFSCAKDHTPTVWFADNGERLGTYR------------------------------GHNGAVWCCDVSRDSMTLIT-GSA   72 (313)
Q Consensus        24 ~l~s~s~d~~i~iw~~~~~~~~~~~~------------------------------~H~~~V~~~~~~~~~~~l~s-~s~   72 (313)
                      .++|++.+|.|++|++.+++.++++.                              .|.........+|||++++. ...
T Consensus        13 ~f~Sgg~sG~V~V~dlpS~r~l~~IpVfspd~~~g~g~~~es~~vl~~~~~~~~gd~hhP~~s~t~gtpDGr~lfV~d~~   92 (441)
T d1qnia2          13 GFWSGGHQGEVRVLGVPSMRELMRIPVFNVDSATGWGITNESKEILGGDQQYLNGDCHHPHISMTDGRYDGKYLFINDKA   92 (441)
T ss_dssp             EEEECBTTCCEEEEEETTTEEEEEECSSSBCTTTCTTTSHHHHHHHCSSSCCSCCCBCCCEEEEETTEEEEEEEEEEETT
T ss_pred             EEEeCCCCCcEEEEeCCCCcEEEEEEeEcCCCCEEEEECCccceEEecccccccCcccCCCcceecccCCCCEEEEEcCC
Confidence            36788899999999999998877652                              24444555556789987744 457


Q ss_pred             CCcEEEEECCCCeEEEEecC--CCCeeEEEeecCCeE--EEEECCCceecccc-------ceeeeee-eCCCCCCCceEE
Q 021399           73 DQTAKLWNVETGAQLFTFNF--DSPARSVDFAVGDKL--AVITTDPFMELNSA-------IHVKRIA-RDPADQGGESVL  140 (313)
Q Consensus        73 D~~v~vWd~~~~~~~~~~~~--~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~-------~~~~~~~-~~~~~~~~~~~~  140 (313)
                      +++|.++|+.+++...+...  ....+.+.|.++.+.  ++........+...       .....+. .+.  .......
T Consensus        93 ~~rVavIDl~t~k~~~ii~iP~g~gphgi~~spdg~t~YV~~~~~~~v~~~~dg~~~~~~~~~~~~~~iD~--~t~~v~~  170 (441)
T d1qnia2          93 NTRVARIRLDIMKTDKITHIPNVQAIHGLRLQKVPKTNYVFCNAEFVIPQPNDGTDFSLDNSYTMFTAIDA--ETMDVAW  170 (441)
T ss_dssp             TTEEEEEETTTTEEEEEEECTTCCCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCGGGEEEEEEEEET--TTCSEEE
T ss_pred             CCEEEEEECCCCcEeeEEecCCCCCccceEEeccCCEEEEEeccCCcccccCcccccccccccceEEeecC--ccceeeE
Confidence            89999999999988776543  567788889876552  22222211111000       0000000 011  1111111


Q ss_pred             EecCCCCceEEEEEccCCCEEEEeeC-----------------------------------------CCeEEEEECCCCc
Q 021399          141 ILKGPQGRINRAVWGPLNRTIISAGE-----------------------------------------DAIVRIWDTETGK  179 (313)
Q Consensus       141 ~~~~~~~~i~~~~~~~~~~~i~t~~~-----------------------------------------d~~i~lwd~~~~~  179 (313)
                      .+.. .+....+.++|+|+++++.+.                                         ++.+.+++....+
T Consensus       171 qI~v-~~~p~~v~~spdGk~a~vt~~nse~~~~id~~t~~~~d~i~v~n~p~~~~~~~dGk~~~v~~~~v~vvd~~~~~~  249 (441)
T d1qnia2         171 QVIV-DGNLDNTDADYTGKYATSTCYNSERAVDLAGTMRNDRDWVVVFNVERIAAAVKAGNFKTIGDSKVPVVDGRGESE  249 (441)
T ss_dssp             EEEE-SSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSBCEEEEEEHHHHHHHHHTTCCBCCTTCCCCEEECSSSCS
T ss_pred             EEec-CCCccceEECCCCCEEEEEecCCCceEEEeccCcceEEEEEeCCccceEEEecCCCEEEeCCCCcEEEEcccCCc
Confidence            1111 123455667777776655543                                         3344555544444


Q ss_pred             eeeecccccCceeceEEEEECCCCCEE-EEeeCCCcEEEEECCCCcEE--------EEEec----CCceeEEEeccCCCE
Q 021399          180 LLKESDKETGHKKTITSLAKAADGSHF-LTGSLDKSAKLWDARTLELI--------KTYVT----ERPVNAVTMSPLLDH  246 (313)
Q Consensus       180 ~~~~~~~~~~h~~~v~~~~~s~~~~~l-~s~s~dg~i~iwd~~~~~~~--------~~~~~----~~~~~~~~~~p~~~~  246 (313)
                      .+..+..    ......++++|||+++ +++..|++|.+||+++....        ..+..    .-...-.+|.+.+. 
T Consensus       250 v~~~IPv----gksPhGv~vSPDGkyl~~~~~~~~tvsv~d~~k~~~~~~~~~~~~~~~~~~~~~glgplh~~fd~~g~-  324 (441)
T d1qnia2         250 FTRYIPV----PKNPHGLNTSPDGKYFIANGKLSPTVSVIAIDKLDDLFEDKIELRDTIVAEPELGLGPLHTTFDGRGN-  324 (441)
T ss_dssp             SEEEECC----BSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHTTTSSCGGGGEEECCBCCSCEEEEEECSSSE-
T ss_pred             eEEEEeC----CCCccCceECCCCCEEEEeCCcCCcEEEEEeehhhhHhhccCCcceEEEeecccccCcccceecCCce-
Confidence            4433321    2235678999999986 55678999999998763211        00000    00122346666653 


Q ss_pred             EEEcccccCceeEeeccCC------CceeeeeeehhhhhhhccccccccceeEEEECCCCCeeEEE
Q 021399          247 VVLGGGQDASAVTTTDHRA------GKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKRYGFL  306 (313)
Q Consensus       247 ~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~fspdgk~~~~~  306 (313)
                      .+++..- +..+..|+...      +.....+|+.   ..++-..||...+.+.+|+||||+|+.|
T Consensus       325 ~yts~~~-ds~v~kw~~~~~~~~~~~~~~~~v~~~---~~v~y~~GH~~~~~~~t~~pdGk~l~s~  386 (441)
T d1qnia2         325 AYTTLFI-DSQVCKWNIADAIKHYNGDRVNYIRQK---LDVQYQPGHNHASLTESRDADGKWLVVL  386 (441)
T ss_dssp             EEEEETT-TTEEEEEEHHHHHHHHTTCCCCCEEEE---EECSSCEEEEEETTTTSTTCCCCEEEEE
T ss_pred             EEEcccc-cceEEEeccchhhhhhccCCCceeEec---cccccCCCCCccccccccCCCCcEEEec
Confidence            3333222 23333343210      0000111110   0112235899999999999999998876

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.33  E-value=3.8e-11  Score=101.37  Aligned_cols=217  Identities=6%  Similarity=-0.027  Sum_probs=123.1

Q ss_pred             eeEEEEccCCCEEEEee-CCCCeEEEeCCCCcEEEEecCCCCceEEEEECCCCCeEEEeeCCCcEEEEECCCCeEEEEec
Q 021399           13 LTYLKYNKDGDLLFSCA-KDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFN   91 (313)
Q Consensus        13 v~~~~fs~~g~~l~s~s-~d~~i~iw~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~v~vWd~~~~~~~~~~~   91 (313)
                      ...++|+|||++|+.+. .++.+.+||+.+++....+..+......-   .....++..+.||++.+|++..........
T Consensus       126 p~~~a~SpDGk~l~va~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~---~~~~~~v~~~~Dg~~~~~~~~~~~~~~~~~  202 (368)
T d1mdah_         126 VHIIGNCASSACLLFFLFGSSAAAGLSVPGASDDQLTKSASCFHIHP---GAAATHYLGSCPASLAASDLAAAPAAAGIV  202 (368)
T ss_dssp             TTSEEECTTSSCEEEEECSSSCEEEEEETTTEEEEEEECSSCCCCEE---EETTEEECCCCTTSCEEEECCSSCCCCEEC
T ss_pred             ccceEECCCCCEEEEEeCCCCeEEEEECCCCcEeEEeeccCcceEcc---CCCceEEEEcCCCCEEEEEecCCceeeeee
Confidence            34689999999998876 57999999999999988887765443211   123467777888888888876543221110


Q ss_pred             -------CCCCeeEEEeecCCeEEEEECCCceeccc---cceeeeeeeCCCCCCCceEEEecCCCCceEEEEEccCCCEE
Q 021399           92 -------FDSPARSVDFAVGDKLAVITTDPFMELNS---AIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTI  161 (313)
Q Consensus        92 -------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i  161 (313)
                             .........+.+....+............   ........   ........ ...........+.+++++..+
T Consensus       203 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~v~~~~~~~~~~~~~~~~---~~~~~~~~-~~~~~~~g~~~~a~~~~~~~~  278 (368)
T d1mdah_         203 GAQCTGAQNCSSQAAQANYPGMLVWAVASSILQGDIPAAGATMKAAI---DGNESGRK-ADNFRSAGFQMVAKLKNTDGI  278 (368)
T ss_dssp             CCCSCTTSCBCSCCEEETTTTEEEECBSSCCEEEECCSSCCEEECCC---CSSCTHHH-HTTEEECSSSCEEEETTTTEE
T ss_pred             ecccccccccceeecccccCcEEEEecCCCEEEEeecCCceEEEeec---ccccceee-eeeecCCCceeEEEcCCCCEE
Confidence                   01111122222222222111111000000   00000000   00000000 000000111235677777665


Q ss_pred             EEeeC---------CCeEEEEECCCCceeeecccccCceeceEEEEECCCCCE--EEEeeCCCcEEEEECCCCcEEEEEe
Q 021399          162 ISAGE---------DAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSH--FLTGSLDKSAKLWDARTLELIKTYV  230 (313)
Q Consensus       162 ~t~~~---------d~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~--l~s~s~dg~i~iwd~~~~~~~~~~~  230 (313)
                      +....         ...|.+||..+++.+.++.    +...+.+++|+|||+.  ++++..|++|++||.++++.+.++.
T Consensus       279 ~v~~~~~~~~~~~~~~~v~v~D~~t~~~~~~~~----~~~~~~~~a~spDG~~~ly~s~~~~~~v~v~D~~tgk~~~~i~  354 (368)
T d1mdah_         279 MILTVEHSRSCLAAAENTSSVTASVGQTSGPIS----NGHDSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQSSVE  354 (368)
T ss_dssp             EEEEEECSSCTTSCEEEEEEEESSSCCEEECCE----EEEEECEEEECCSSSCEEEEEETTTTEEEEEESSSCEEEEECC
T ss_pred             EEEecCCCceeecCCceEEEEECCCCcEeEEec----CCCceeEEEECCCCCEEEEEEeCCCCeEEEEECCCCCEEEEEE
Confidence            54321         2359999999998776653    4567889999999973  5677789999999999999999886


Q ss_pred             cCCceeEEEe
Q 021399          231 TERPVNAVTM  240 (313)
Q Consensus       231 ~~~~~~~~~~  240 (313)
                      .....+.+++
T Consensus       355 ~g~~P~~l~~  364 (368)
T d1mdah_         355 LDKGPESLSV  364 (368)
T ss_dssp             CCSCCCEEEC
T ss_pred             CCCCCCEEEE
Confidence            5544455544

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.19  E-value=1.2e-10  Score=101.56  Aligned_cols=145  Identities=8%  Similarity=0.121  Sum_probs=104.1

Q ss_pred             eEEEEccCCCEEEEeeCCCCeEEEeCCCCcEEEEe-----cCCCCceEEEEECCCCCeEEEeeC---------CCcEEEE
Q 021399           14 TYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTY-----RGHNGAVWCCDVSRDSMTLITGSA---------DQTAKLW   79 (313)
Q Consensus        14 ~~~~fs~~g~~l~s~s~d~~i~iw~~~~~~~~~~~-----~~H~~~V~~~~~~~~~~~l~s~s~---------D~~v~vW   79 (313)
                      ..+.|.++++++.  ..|+.+.+||..+++....+     ..|...|.++.||||++.++.++.         ++.+.+|
T Consensus        20 ~~~~W~~d~~~~~--~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~i~~~~~SpDg~~i~~~~~~~~~~r~s~~~~~~l~   97 (470)
T d2bgra1          20 YSLRWISDHEYLY--KQENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIY   97 (470)
T ss_dssp             CCCEECSSSEEEE--ESSSCEEEEETTTCCEEEEECTTTTTTSSSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEE
T ss_pred             cCCEeCCCCEEEE--EcCCcEEEEECCCCCEEEEEchhhhhhccCccceeEECCCCCEEEEEECCcceeeeccCceEEEE
Confidence            4688999998877  45788999999999876544     455678999999999998887753         4566777


Q ss_pred             ECCCCeEEEEecCCCCeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEccCCC
Q 021399           80 NVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNR  159 (313)
Q Consensus        80 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~  159 (313)
                      |+.+++..                                                     .+..+...+..+.|+|+|+
T Consensus        98 d~~~~~~~-----------------------------------------------------~l~~~~~~~~~~~~SPDG~  124 (470)
T d2bgra1          98 DLNKRQLI-----------------------------------------------------TEERIPNNTQWVTWSPVGH  124 (470)
T ss_dssp             ETTTTEEC-----------------------------------------------------CSSCCCTTEEEEEECSSTT
T ss_pred             ECCCCccc-----------------------------------------------------ccccCCccccccccccCcc
Confidence            77765421                                                     1123445677889999999


Q ss_pred             EEEEeeCCCeEEEEECCCCceeeeccccc---------------CceeceEEEEECCCCCEEEEeeCCCc
Q 021399          160 TIISAGEDAIVRIWDTETGKLLKESDKET---------------GHKKTITSLAKAADGSHFLTGSLDKS  214 (313)
Q Consensus       160 ~i~t~~~d~~i~lwd~~~~~~~~~~~~~~---------------~h~~~v~~~~~s~~~~~l~s~s~dg~  214 (313)
                      .+|... ++.+++|+...++..+......               ...+....+.|||||++|+....|.+
T Consensus       125 ~ia~~~-~~~l~~~~~~~g~~~~~t~~~~~~~~~~g~~d~~~~~~~~~~~~~~~wSPDGk~ia~~~~d~~  193 (470)
T d2bgra1         125 KLAYVW-NNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDT  193 (470)
T ss_dssp             CEEEEE-TTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEECT
T ss_pred             eeeEee-cccceEEECCCCceeeeeeccCCCcccccccceeeeeeecCCccccEECCCCCccceeEecCC
Confidence            999865 6789999998877654322110               01223456789999999999876533

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.16  E-value=8e-08  Score=76.55  Aligned_cols=227  Identities=13%  Similarity=0.071  Sum_probs=125.4

Q ss_pred             CcccccccccceeEEEEccCCCEEEEeeCCC---CeEEEeCCCCcEEEEecCCCCceEEEEECCCCCeEEEeeC-CCcEE
Q 021399            2 RPILMKGHERPLTYLKYNKDGDLLFSCAKDH---TPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSA-DQTAK   77 (313)
Q Consensus         2 ~~~~l~~h~~~v~~~~fs~~g~~l~s~s~d~---~i~iw~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~-D~~v~   77 (313)
                      .++.+..+.+.+..-+|||||++||-.....   .+.+.+...+.. ..+..+.+......|+|+|+.++..+. ++...
T Consensus        30 ~~~~l~~~~~~~~sP~wSPDGk~IAf~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~spdg~~i~~~~~~~~~~~  108 (269)
T d2hqsa1          30 NQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAV-RQVASFPRHNGAPAFSPDGSKLAFALSKTGSLN  108 (269)
T ss_dssp             SCEEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCE-EEEECCSSCEEEEEECTTSSEEEEEECTTSSCE
T ss_pred             CcEEEecCCCceeeeEECCCCCEEEEEEeeccCcceeeeecccCce-eEEeeeecccccceecCCCCeeeEeeecCCccc
Confidence            3556666677788999999999998765433   244456555543 355567788889999999997766543 33333


Q ss_pred             EEE--CCCCeEEEEecCCCCeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEc
Q 021399           78 LWN--VETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWG  155 (313)
Q Consensus        78 vWd--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~  155 (313)
                      ++.  ....................+..+..........    .....+......     ......+...........|+
T Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~g~~~i~~~~~~-----~~~~~~~~~~~~~~~~~~~s  179 (269)
T d2hqsa1         109 LYVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAFTSDQ----AGRPQVYKVNIN-----GGAPQRITWEGSQNQDADVS  179 (269)
T ss_dssp             EEEEETTTCCEEECCCCSSCEEEEEECTTSSEEEEEECT----TSSCEEEEEETT-----SSCCEECCCSSSEEEEEEEC
T ss_pred             eeecccccccceeeeeccccccccccccccccceecccc----cCCceEeeeecc-----cccceeeecccccccccccc
Confidence            332  2222222222122222222333333222221110    000111111100     01111222334556678899


Q ss_pred             cCCCEEEEeeCCC---eEEEEECCCCceeeecccccCceeceEEEEECCCCCEEEEeeC---CCcEEEEECCCCcEEEEE
Q 021399          156 PLNRTIISAGEDA---IVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSL---DKSAKLWDARTLELIKTY  229 (313)
Q Consensus       156 ~~~~~i~t~~~d~---~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~---dg~i~iwd~~~~~~~~~~  229 (313)
                      |++..++..+.++   .|.+.|...+.. ...    .+........|+|||+.|+-.+.   ...|.+++++.+...+-.
T Consensus       180 pdg~~~~~~~~~~~~~~i~~~~~~~~~~-~~~----~~~~~~~~p~~SPDG~~i~f~s~~~~~~~l~~~~~dg~~~~~lt  254 (269)
T d2hqsa1         180 SDGKFMVMVSSNGGQQHIAKQDLATGGV-QVL----SSTFLDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGRFKARLP  254 (269)
T ss_dssp             TTSSEEEEEEECSSCEEEEEEETTTCCE-EEC----CCSSSCEEEEECTTSSEEEEEEEETTEEEEEEEETTSCCEEECC
T ss_pred             cccceeEEEeecCCceeeeEeecccccc-eEe----ecCccccceEECCCCCEEEEEEcCCCCcEEEEEECCCCCEEEEe
Confidence            9999888765443   455556555433 222    12344566789999999875554   346889999877764433


Q ss_pred             ecCCceeEEEeccC
Q 021399          230 VTERPVNAVTMSPL  243 (313)
Q Consensus       230 ~~~~~~~~~~~~p~  243 (313)
                      .....+...+|+|-
T Consensus       255 ~~~g~~~~p~WSP~  268 (269)
T d2hqsa1         255 ATDGQVKFPAWSPY  268 (269)
T ss_dssp             CSSSEEEEEEECCC
T ss_pred             CCCCcEEeEEeCCC
Confidence            44556777889984

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=99.11  E-value=1.1e-09  Score=93.34  Aligned_cols=240  Identities=11%  Similarity=-0.002  Sum_probs=146.9

Q ss_pred             cccceeEEEEccCCCEEEEe-eCCCCeEEEeCCCCcEEEEec-CCCCceEEEEECCCCCe--EEEeeCCC----------
Q 021399            9 HERPLTYLKYNKDGDLLFSC-AKDHTPTVWFADNGERLGTYR-GHNGAVWCCDVSRDSMT--LITGSADQ----------   74 (313)
Q Consensus         9 h~~~v~~~~fs~~g~~l~s~-s~d~~i~iw~~~~~~~~~~~~-~H~~~V~~~~~~~~~~~--l~s~s~D~----------   74 (313)
                      |.....+..++|||++|+.. ..+.+|.++|+++.+....++ .+......++|+|+++.  ++..+.+.          
T Consensus        70 hhP~~s~t~gtpDGr~lfV~d~~~~rVavIDl~t~k~~~ii~iP~g~gphgi~~spdg~t~YV~~~~~~~v~~~~dg~~~  149 (441)
T d1qnia2          70 HHPHISMTDGRYDGKYLFINDKANTRVARIRLDIMKTDKITHIPNVQAIHGLRLQKVPKTNYVFCNAEFVIPQPNDGTDF  149 (441)
T ss_dssp             CCCEEEEETTEEEEEEEEEEETTTTEEEEEETTTTEEEEEEECTTCCCEEEEEECCSSBCCEEEEEECSCEESSCSSSCC
T ss_pred             cCCCcceecccCCCCEEEEEcCCCCEEEEEECCCCcEeeEEecCCCCCccceEEeccCCEEEEEeccCCcccccCccccc
Confidence            44455667778999999665 468899999999998877765 35678899999999883  33333332          


Q ss_pred             -------cEEEEECCCCeEEEEecCCCCeeEEEeecCCeEEEEECCCce---eccc-------cceeeee----------
Q 021399           75 -------TAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFM---ELNS-------AIHVKRI----------  127 (313)
Q Consensus        75 -------~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~-------~~~~~~~----------  127 (313)
                             .+..+|..+.+.............+.+.++++.+.+.+....   ....       .+...+.          
T Consensus       150 ~~~~~~~~~~~iD~~t~~v~~qI~v~~~p~~v~~spdGk~a~vt~~nse~~~~id~~t~~~~d~i~v~n~p~~~~~~~dG  229 (441)
T d1qnia2         150 SLDNSYTMFTAIDAETMDVAWQVIVDGNLDNTDADYTGKYATSTCYNSERAVDLAGTMRNDRDWVVVFNVERIAAAVKAG  229 (441)
T ss_dssp             CGGGEEEEEEEEETTTCSEEEEEEESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSBCEEEEEEHHHHHHHHHTT
T ss_pred             ccccccceEEeecCccceeeEEEecCCCccceEECCCCCEEEEEecCCCceEEEeccCcceEEEEEeCCccceEEEecCC
Confidence                   235588888887776666666778888988887766542210   0000       0000000          


Q ss_pred             --eeC--------CCCCCCceEEEecCCCCceEEEEEccCCCEE-EEeeCCCeEEEEECCCCceeeecccccCce-----
Q 021399          128 --ARD--------PADQGGESVLILKGPQGRINRAVWGPLNRTI-ISAGEDAIVRIWDTETGKLLKESDKETGHK-----  191 (313)
Q Consensus       128 --~~~--------~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i-~t~~~d~~i~lwd~~~~~~~~~~~~~~~h~-----  191 (313)
                        ...        ........+..+..+.+ ...+.++|+|+++ +++..+++|.+||+.+...  .+.....+.     
T Consensus       230 k~~~v~~~~v~vvd~~~~~~v~~~IPvgks-PhGv~vSPDGkyl~~~~~~~~tvsv~d~~k~~~--~~~~~~~~~~~~~~  306 (441)
T d1qnia2         230 NFKTIGDSKVPVVDGRGESEFTRYIPVPKN-PHGLNTSPDGKYFIANGKLSPTVSVIAIDKLDD--LFEDKIELRDTIVA  306 (441)
T ss_dssp             CCBCCTTCCCCEEECSSSCSSEEEECCBSS-CCCEEECTTSCEEEEECTTSSBEEEEEGGGHHH--HTTTSSCGGGGEEE
T ss_pred             CEEEeCCCCcEEEEcccCCceEEEEeCCCC-ccCceECCCCCEEEEeCCcCCcEEEEEeehhhh--HhhccCCcceEEEe
Confidence              000        00001112222332222 3568899999976 5567899999999864221  011000111     


Q ss_pred             -----eceEEEEECCCCCEEEEeeCCCcEEEEECCC----------CcEEEEEe------cCCceeEEEeccCCCEEEEc
Q 021399          192 -----KTITSLAKAADGSHFLTGSLDKSAKLWDART----------LELIKTYV------TERPVNAVTMSPLLDHVVLG  250 (313)
Q Consensus       192 -----~~v~~~~~s~~~~~l~s~s~dg~i~iwd~~~----------~~~~~~~~------~~~~~~~~~~~p~~~~~~~~  250 (313)
                           -.....+|+++|..+.|.+.|.+|..|++..          ...+..+.      |...+.+.+++|+|+++++.
T Consensus       307 ~~~~glgplh~~fd~~g~~yts~~~ds~v~kw~~~~~~~~~~~~~~~~v~~~~~v~y~~GH~~~~~~~t~~pdGk~l~s~  386 (441)
T d1qnia2         307 EPELGLGPLHTTFDGRGNAYTTLFIDSQVCKWNIADAIKHYNGDRVNYIRQKLDVQYQPGHNHASLTESRDADGKWLVVL  386 (441)
T ss_dssp             CCBCCSCEEEEEECSSSEEEEEETTTTEEEEEEHHHHHHHHTTCCCCCEEEEEECSSCEEEEEETTTTSTTCCCCEEEEE
T ss_pred             ecccccCcccceecCCceEEEcccccceEEEeccchhhhhhccCCCceeEeccccccCCCCCccccccccCCCCcEEEec
Confidence                 1234457999999899999999999999741          12333332      12234556789999998876


Q ss_pred             c
Q 021399          251 G  251 (313)
Q Consensus       251 ~  251 (313)
                      .
T Consensus       387 ~  387 (441)
T d1qnia2         387 S  387 (441)
T ss_dssp             E
T ss_pred             C
Confidence            4

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.00  E-value=1.9e-07  Score=74.28  Aligned_cols=227  Identities=8%  Similarity=-0.004  Sum_probs=130.2

Q ss_pred             ccccceeEEEEccCCCEEEEe-eCCCCeEEEeCCCCcE-EEEecCCCCceEEEEECCCCCeEEEeeCCCcEEEEECCCCe
Q 021399            8 GHERPLTYLKYNKDGDLLFSC-AKDHTPTVWFADNGER-LGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGA   85 (313)
Q Consensus         8 ~h~~~v~~~~fs~~g~~l~s~-s~d~~i~iw~~~~~~~-~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~v~vWd~~~~~   85 (313)
                      .+......++++++|...++. +..+.+..++...... ...+.+. .....++++++++++++....+.+++++-.+..
T Consensus        11 ~~~~~P~~vavd~dG~i~v~~~~~~~~i~~~~~~~~~~~~~~~~~~-~~p~gvav~~~g~i~v~d~~~~~i~~~~~~~~~   89 (260)
T d1rwia_          11 DFRLSPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGL-YQPQGLAVDGAGTVYVTDFNNRVVTLAAGSNNQ   89 (260)
T ss_dssp             CSCCCEEEEEECTTCCEEEEECSSSCEEEEEC----CEEECCCCSC-CSCCCEEECTTCCEEEEETTTEEEEECTTCSCC
T ss_pred             CCcCCCCEEEEcCCCCEEEEEcCCCCEEEEEcCCCceEEEeccCCc-cCceEEEEcCCCCEEEeeeeeceeeeeeeccce
Confidence            345567899999999976654 4556666665443322 2222222 234678899999988887777777776655544


Q ss_pred             EEEEecCCCCeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEccCCCEEEEee
Q 021399           86 QLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAG  165 (313)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~t~~  165 (313)
                      .+........+..+.+.+.+.+.+......       ....+.  ..  .................+++.++++.+++..
T Consensus        90 ~~~~~~~~~~p~~iavd~~g~i~v~d~~~~-------~~~~~~--~~--~~~~~~~~~~~~~~p~~i~~~~~g~~~v~~~  158 (260)
T d1rwia_          90 TVLPFDGLNYPEGLAVDTQGAVYVADRGNN-------RVVKLA--AG--SKTQTVLPFTGLNDPDGVAVDNSGNVYVTDT  158 (260)
T ss_dssp             EECCCCSCCSEEEEEECTTCCEEEEEGGGT-------EEEEEC--TT--CSSCEECCCCSCCSCCEEEECTTCCEEEEEG
T ss_pred             eeeeeeeeeecccccccccceeEeeccccc-------cccccc--cc--cceeeeeeecccCCcceeeecCCCCEeeecc
Confidence            433322233455666666655554432110       000000  00  0000111111122345788889999888888


Q ss_pred             CCCeEEEEECCCCceeeecccccCceeceEEEEECCCCCEEEEeeCCCcEEEEECCCCcEEEEE-ecCCceeEEEeccCC
Q 021399          166 EDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTY-VTERPVNAVTMSPLL  244 (313)
Q Consensus       166 ~d~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~-~~~~~~~~~~~~p~~  244 (313)
                      .++.|..+|........ ..  ...-.....+++.++|+.+++....+.|..++.......... ..-.....+++++++
T Consensus       159 ~~~~i~~~d~~~~~~~~-~~--~~~~~~p~gi~~d~~g~l~vsd~~~~~i~~~~~~~~~~~~~~~~~~~~P~~i~~d~~g  235 (260)
T d1rwia_         159 DNNRVVKLEAESNNQVV-LP--FTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTSTVLPFTGLNTPLAVAVDSDR  235 (260)
T ss_dssp             GGTEEEEECTTTCCEEE-CC--CSSCCSEEEEEECTTCCEEEEETTTTEEEEECTTCSCCEECCCCSCCCEEEEEECTTC
T ss_pred             ccccccccccccceeee-ee--ccccCCCccceeeeeeeeeeeecCCCEEEEEeCCCCeEEEEccCCCCCeEEEEEeCCC
Confidence            88999999987544322 21  123355788999999998888888888888887654322111 111345678888876


Q ss_pred             CEEEEc
Q 021399          245 DHVVLG  250 (313)
Q Consensus       245 ~~~~~~  250 (313)
                      . ++++
T Consensus       236 ~-l~va  240 (260)
T d1rwia_         236 T-VYVA  240 (260)
T ss_dssp             C-EEEE
T ss_pred             C-EEEE
Confidence            5 4444

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=98.98  E-value=4e-07  Score=74.06  Aligned_cols=228  Identities=8%  Similarity=-0.044  Sum_probs=134.7

Q ss_pred             ceeEEEEccCCCEEEEeeCCCCeEEEeCCCCcEEEEecCCCCceEEEEECCCCCeEEEeeCCCcEEEEECCCCeEEEEec
Q 021399           12 PLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFN   91 (313)
Q Consensus        12 ~v~~~~fs~~g~~l~s~s~d~~i~iw~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~v~vWd~~~~~~~~~~~   91 (313)
                      .+..++++|||.++++...+++|..|+.+..  ...+....+.+.+++|+++|+++++...++.+..|+.......    
T Consensus        29 ~~e~iAv~pdG~l~vt~~~~~~I~~i~p~g~--~~~~~~~~~~~~gla~~~dG~l~v~~~~~~~~~~~~~~~~~~~----  102 (302)
T d2p4oa1          29 FLENLASAPDGTIFVTNHEVGEIVSITPDGN--QQIHATVEGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGT----  102 (302)
T ss_dssp             CEEEEEECTTSCEEEEETTTTEEEEECTTCC--EEEEEECSSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSC----
T ss_pred             CcCCEEECCCCCEEEEeCCCCEEEEEeCCCC--EEEEEcCCCCcceEEEcCCCCeEEEecCCceEEEEEecccccc----
Confidence            4678999999999999988998888875433  3345556778999999999999888888888877775322100    


Q ss_pred             CCCCeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEccCCCEEEEeeCCCeEE
Q 021399           92 FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVR  171 (313)
Q Consensus        92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~t~~~d~~i~  171 (313)
                          ..                                         ...........+.+.+.++++.+++-+.++.+.
T Consensus       103 ----~~-----------------------------------------~~~~~~~~~~~n~i~~~~~g~~~v~~~~~~~i~  137 (302)
T d2p4oa1         103 ----VE-----------------------------------------TLLTLPDAIFLNGITPLSDTQYLTADSYRGAIW  137 (302)
T ss_dssp             ----EE-----------------------------------------EEEECTTCSCEEEEEESSSSEEEEEETTTTEEE
T ss_pred             ----ee-----------------------------------------eccccCCccccceeEEccCCCEEeeccccccce
Confidence                00                                         000001123356677778888888777788888


Q ss_pred             EEECCCCceeeecc-------cccCceeceEEEEECCCCCEEEEeeCCCcEEEEECCCCcEEE---EEecCCceeEEEec
Q 021399          172 IWDTETGKLLKESD-------KETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIK---TYVTERPVNAVTMS  241 (313)
Q Consensus       172 lwd~~~~~~~~~~~-------~~~~h~~~v~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~---~~~~~~~~~~~~~~  241 (313)
                      .+|...+.......       ...........+.++. +..+++.+..+.|..++........   .+........+++.
T Consensus       138 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ngi~~~~-~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~pdgia~d  216 (302)
T d2p4oa1         138 LIDVVQPSGSIWLEHPMLARSNSESVFPAANGLKRFG-NFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVEQTNIDDFAFD  216 (302)
T ss_dssp             EEETTTTEEEEEEECGGGSCSSTTCCSCSEEEEEEET-TEEEEEETTTTEEEEEEBCTTSCBCCCEEEEESCCCSSEEEB
T ss_pred             eeeccCCcceeEecCCccceeeccCcccccccccccC-CceeeecCCCCeEEeccccccccccccccccCCCCCcceEEC
Confidence            88877654211100       0011123345566654 3456666678888888876543221   22233445679999


Q ss_pred             cCCCEEEEcccccCceeEeeccCCCceeeeeeehhhhhhhccccccccceeEEEE---CCCCCeeE
Q 021399          242 PLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAF---NPDGKRYG  304 (313)
Q Consensus       242 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~f---spdgk~~~  304 (313)
                      +++.. +++...+. .+...+...+..  .+.         .........++++|   +||+|.+-
T Consensus       217 ~dG~l-~va~~~~~-~V~~i~p~G~~~--~~~---------~~~~~~~~pt~vafg~~~~D~~~Ly  269 (302)
T d2p4oa1         217 VEGNL-YGATHIYN-SVVRIAPDRSTT--IIA---------QAEQGVIGSTAVAFGQTEGDCTAIY  269 (302)
T ss_dssp             TTCCE-EEECBTTC-CEEEECTTCCEE--EEE---------CGGGTCTTEEEEEECCSTTTTTEEE
T ss_pred             CCCCE-EEEEcCCC-cEEEECCCCCEE--EEE---------ecCCCCCCceEEEEcCCCCCCCEEE
Confidence            98874 44433222 233333221110  111         11112335689999   78888753

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=98.96  E-value=3.3e-06  Score=66.80  Aligned_cols=239  Identities=11%  Similarity=0.034  Sum_probs=129.3

Q ss_pred             CeEEEeCCCCcEEEEecCCCCceEEEEECCCCCeEEEee-CCC--cEEEEECCCCeEEEEecCCCCeeEEEeecCCeEEE
Q 021399           33 TPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGS-ADQ--TAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAV  109 (313)
Q Consensus        33 ~i~iw~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s-~D~--~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  109 (313)
                      .|.|-|.+ |.....+..+...+.+.+|||||+.||=.. ..+  .+.+.+...+................++++++.++
T Consensus        20 ~l~i~d~d-G~~~~~l~~~~~~~~sP~wSPDGk~IAf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~i~   98 (269)
T d2hqsa1          20 ELRVSDYD-GYNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASFPRHNGAPAFSPDGSKLA   98 (269)
T ss_dssp             EEEEEETT-SCSCEEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEEEECCSSCEEEEEECTTSSEEE
T ss_pred             EEEEEcCC-CCCcEEEecCCCceeeeEECCCCCEEEEEEeeccCcceeeeecccCceeEEeeeecccccceecCCCCeee
Confidence            35555654 333334444567788999999999876443 333  35555666666655555556667778888766655


Q ss_pred             EECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEccCCCEEE-EeeCCC--eEEEEECCCCceeeeccc
Q 021399          110 ITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTII-SAGEDA--IVRIWDTETGKLLKESDK  186 (313)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~-t~~~d~--~i~lwd~~~~~~~~~~~~  186 (313)
                      .......    .........     ...................+++.+..++ +...++  .|.+.+...+.....   
T Consensus        99 ~~~~~~~----~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~~~~~~~~~~~---  166 (269)
T d2hqsa1          99 FALSKTG----SLNLYVMDL-----ASGQIRQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAPQRI---  166 (269)
T ss_dssp             EEECTTS----SCEEEEEET-----TTCCEEECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCCEEC---
T ss_pred             EeeecCC----ccceeeccc-----ccccceeeeeccccccccccccccccceecccccCCceEeeeecccccceee---
Confidence            4322110    000000000     0011111112222333445566555444 333444  455566655433221   


Q ss_pred             ccCceeceEEEEECCCCCEEEEeeCCC---cEEEEECCCCcEEEEEecCCceeEEEeccCCCEEEEcccccCceeEeecc
Q 021399          187 ETGHKKTITSLAKAADGSHFLTGSLDK---SAKLWDARTLELIKTYVTERPVNAVTMSPLLDHVVLGGGQDASAVTTTDH  263 (313)
Q Consensus       187 ~~~h~~~v~~~~~s~~~~~l~s~s~dg---~i~iwd~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~  263 (313)
                       ...........++|++..++..+.++   .+.+.|...+.. ..+..........|+|+|+.++......         
T Consensus       167 -~~~~~~~~~~~~spdg~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~~~~~~p~~SPDG~~i~f~s~~~---------  235 (269)
T d2hqsa1         167 -TWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGV-QVLSSTFLDETPSLAPNGTMVIYSSSQG---------  235 (269)
T ss_dssp             -CCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCE-EECCCSSSCEEEEECTTSSEEEEEEEET---------
T ss_pred             -ecccccccccccccccceeEEEeecCCceeeeEeecccccc-eEeecCccccceEECCCCCEEEEEEcCC---------
Confidence             12345667778999999988877654   344556655544 3334444566788999999987654322         


Q ss_pred             CCCceeeeeeehhhhhhhccccccccceeEEEECC
Q 021399          264 RAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNP  298 (313)
Q Consensus       264 ~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~fsp  298 (313)
                        +..++..++..... ...+....+.+...+|||
T Consensus       236 --~~~~l~~~~~dg~~-~~~lt~~~g~~~~p~WSP  267 (269)
T d2hqsa1         236 --MGSVLNLVSTDGRF-KARLPATDGQVKFPAWSP  267 (269)
T ss_dssp             --TEEEEEEEETTSCC-EEECCCSSSEEEEEEECC
T ss_pred             --CCcEEEEEECCCCC-EEEEeCCCCcEEeEEeCC
Confidence              12233444443222 223444566778888998

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=98.92  E-value=3.6e-06  Score=68.81  Aligned_cols=233  Identities=8%  Similarity=-0.011  Sum_probs=140.9

Q ss_pred             ceeEEEEccCCCEEEEeeCCCCeEEEeCCCCcEEEEecCCCCceEEEEECCCCCeEEEeeCC----CcEEEEECCCCeEE
Q 021399           12 PLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSAD----QTAKLWNVETGAQL   87 (313)
Q Consensus        12 ~v~~~~fs~~g~~l~s~s~d~~i~iw~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D----~~v~vWd~~~~~~~   87 (313)
                      .+..++|+++|++.++-..++.|..|+.+.++....+.........++++++|+++++...+    +.+...+.......
T Consensus        41 ~lEG~~~D~~G~Ly~~D~~~g~I~ri~p~g~~~~~~~~~~~~~p~gla~~~dG~l~va~~~~~~~~~~i~~~~~~~~~~~  120 (319)
T d2dg1a1          41 QLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQ  120 (319)
T ss_dssp             CEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCE
T ss_pred             CcEeCEECCCCCEEEEECCCCEEEEEECCCCeEEEEEeCCCCCeeEEEECCCCCEEEEecCCCccceeEEEEcCCCceee
Confidence            34688999999988887788999989888777666665666678899999999887765432    23444444444333


Q ss_pred             EEecC---CCCeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEccCCCEE-EE
Q 021399           88 FTFNF---DSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTI-IS  163 (313)
Q Consensus        88 ~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i-~t  163 (313)
                      .....   ......+.+.+++.+.+...... .......+..+.     ..+..+..+...-...+.++|+|+++.+ ++
T Consensus       121 ~~~~~~~~~~~~nd~~~d~~G~l~vtd~~~~-~~~~~g~v~~~~-----~dg~~~~~~~~~~~~pnGia~s~dg~~lyva  194 (319)
T d2dg1a1         121 DIIEDLSTAYCIDDMVFDSKGGFYFTDFRGY-STNPLGGVYYVS-----PDFRTVTPIIQNISVANGIALSTDEKVLWVT  194 (319)
T ss_dssp             EEECSSSSCCCEEEEEECTTSCEEEEECCCB-TTBCCEEEEEEC-----TTSCCEEEEEEEESSEEEEEECTTSSEEEEE
T ss_pred             eeccCCCcccCCcceeEEeccceeecccccc-cccCcceeEEEe-----cccceeEEEeeccceeeeeeeccccceEEEe
Confidence            32221   22345566666666554432210 000111111111     1111122221222334678999999855 55


Q ss_pred             eeCCCeEEEEECCCC-ceeeecc----cccCceeceEEEEECCCCCEEEEeeCCCcEEEEECCCCcEEEEEecCC-----
Q 021399          164 AGEDAIVRIWDTETG-KLLKESD----KETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTER-----  233 (313)
Q Consensus       164 ~~~d~~i~lwd~~~~-~~~~~~~----~~~~h~~~v~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~-----  233 (313)
                      -+..+.|..||+... .......    .........-.+++.++|+..++....+.|..||. .++.+..+..+.     
T Consensus       195 d~~~~~I~~~d~~~~g~~~~~~~~~~~~~~~~~~~PdGl~vD~~G~l~Va~~~~g~V~~~~p-~G~~l~~i~~P~~~~~~  273 (319)
T d2dg1a1         195 ETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYGQGRVLVFNK-RGYPIGQILIPGRDEGH  273 (319)
T ss_dssp             EGGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEETTTEEEEECT-TSCEEEEEECTTGGGTC
T ss_pred             cccCCceEEEEEcCCCceeccccceeeeccCCccceeeeeEcCCCCEEEEEcCCCEEEEECC-CCcEEEEEeCCCcCCCc
Confidence            567889999987532 2211110    00111123557899999998888888999999996 688888875432     


Q ss_pred             --ceeEEEeccCCCEEEEcc
Q 021399          234 --PVNAVTMSPLLDHVVLGG  251 (313)
Q Consensus       234 --~~~~~~~~p~~~~~~~~~  251 (313)
                        ...+++|.|..+.++++.
T Consensus       274 ~~~~~~~~~~~~~~~~~~t~  293 (319)
T d2dg1a1         274 MLRSTHPQFIPGTNQLIICS  293 (319)
T ss_dssp             SCBCCEEEECTTSCEEEEEE
T ss_pred             CceeeeEEEeCCCCEEEEEc
Confidence              356888888877776653

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=98.90  E-value=3.2e-06  Score=69.00  Aligned_cols=238  Identities=8%  Similarity=0.049  Sum_probs=140.1

Q ss_pred             ccceeEEEEccCCCEEEEeeC-------CCCeEEEeCCCCcEEEEecCC----CCceEEEEECCCCCeEEEeeCCCcEEE
Q 021399           10 ERPLTYLKYNKDGDLLFSCAK-------DHTPTVWFADNGERLGTYRGH----NGAVWCCDVSRDSMTLITGSADQTAKL   78 (313)
Q Consensus        10 ~~~v~~~~fs~~g~~l~s~s~-------d~~i~iw~~~~~~~~~~~~~H----~~~V~~~~~~~~~~~l~s~s~D~~v~v   78 (313)
                      .......+|+++|+++++...       +++|..||.+++.........    .+.-..++|.++++.++.++..+.+..
T Consensus        17 ~~g~EGpa~d~dG~ly~~~~~~~~~~~~~g~I~r~d~~~~~~~~~~~~~~~~~~g~P~Gl~~~~dg~~l~vad~~~~i~~   96 (314)
T d1pjxa_          17 IPGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVADMRLGLLV   96 (314)
T ss_dssp             CTTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEETTTEEEE
T ss_pred             CCCCeEeEEeCCCCEEEEECccccccccCCEEEEEECCCCcEEEEECCccccCCCcceeEEEeCCCCEEEEEECCCeEEE
Confidence            344577899999998876432       466888888877653332211    122457999999988877777777888


Q ss_pred             EECCCCeEEEEec-CCC----CeeEEEeecCCeEEEEECCCceec--------cccceeeeeeeCCCCCCCceEEEecCC
Q 021399           79 WNVETGAQLFTFN-FDS----PARSVDFAVGDKLAVITTDPFMEL--------NSAIHVKRIARDPADQGGESVLILKGP  145 (313)
Q Consensus        79 Wd~~~~~~~~~~~-~~~----~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~  145 (313)
                      .+.+......... ...    ....+.+.+++.+.+.........        .....++.+.     ..+..... ...
T Consensus        97 ~~~~g~~~~~~~~~~~g~~~~~pndl~~d~~G~lyvtd~~~~~~~~~~~~~~~~~~G~v~~~~-----~dg~~~~~-~~~  170 (314)
T d1pjxa_          97 VQTDGTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFT-----TDGQMIQV-DTA  170 (314)
T ss_dssp             EETTSCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEEC-----TTSCEEEE-EEE
T ss_pred             EeCCCcEEEEEeccccccccCCCcEEEECCCCCEEEecCccCcccccccceeccCCceEEEEe-----ecCceeEe-eCC
Confidence            8887654332211 111    235567777666655432110000        0001111111     01111111 111


Q ss_pred             CCceEEEEEccCCC-----EEEEeeCCCeEEEEECCCCceeee---cccc-cCceeceEEEEECCCCCEEEEeeCCCcEE
Q 021399          146 QGRINRAVWGPLNR-----TIISAGEDAIVRIWDTETGKLLKE---SDKE-TGHKKTITSLAKAADGSHFLTGSLDKSAK  216 (313)
Q Consensus       146 ~~~i~~~~~~~~~~-----~i~t~~~d~~i~lwd~~~~~~~~~---~~~~-~~h~~~v~~~~~s~~~~~l~s~s~dg~i~  216 (313)
                      ...-+.++|+|++.     .+++-+..+.|..||+.....+..   +... ..+....-.+++.++|+..++....+.|.
T Consensus       171 ~~~pNGi~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~pdGiavD~~GnlyVa~~~~g~I~  250 (314)
T d1pjxa_         171 FQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGSSHIE  250 (314)
T ss_dssp             ESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETTTEEE
T ss_pred             cceeeeeEECCCCCcceeEEEEEeecccceEEeeccCccccceeeEEEEccccccccceeeEEecCCcEEEEEcCCCEEE
Confidence            22335678888764     455556788898888653322221   1111 11223356789999999888887889999


Q ss_pred             EEECCCCcEEEEEecC-CceeEEEeccCCCEEEEcccc
Q 021399          217 LWDARTLELIKTYVTE-RPVNAVTMSPLLDHVVLGGGQ  253 (313)
Q Consensus       217 iwd~~~~~~~~~~~~~-~~~~~~~~~p~~~~~~~~~~~  253 (313)
                      .||.++++.+..+..+ ....+++|.|+++.++++...
T Consensus       251 ~~dp~~g~~~~~i~~p~~~~t~~afg~d~~~lyVt~~~  288 (314)
T d1pjxa_         251 VFGPDGGQPKMRIRCPFEKPSNLHFKPQTKTIFVTEHE  288 (314)
T ss_dssp             EECTTCBSCSEEEECSSSCEEEEEECTTSSEEEEEETT
T ss_pred             EEeCCCCEEEEEEECCCCCEEEEEEeCCCCEEEEEECC
Confidence            9999988776666543 457789999988888776443

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=98.83  E-value=5.9e-07  Score=75.10  Aligned_cols=206  Identities=7%  Similarity=0.009  Sum_probs=112.3

Q ss_pred             ccceeEEEEccCCCEEEEeeCCCCeEEEeCCCCcEEEEecC--CCCceEEEEECCCCCe--EEEee-CCCcEEEEECCC-
Q 021399           10 ERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRG--HNGAVWCCDVSRDSMT--LITGS-ADQTAKLWNVET-   83 (313)
Q Consensus        10 ~~~v~~~~fs~~g~~l~s~s~d~~i~iw~~~~~~~~~~~~~--H~~~V~~~~~~~~~~~--l~s~s-~D~~v~vWd~~~-   83 (313)
                      ...+..++|+|++++|+++.. +.+..|.+.....+.....  .......++++++++.  ++++. ..++|..+.+.. 
T Consensus        39 ~~~~s~la~s~d~~~ly~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~p~~v~~~~~~~~~~v~~a~~~~~~v~~~~~~~~  117 (365)
T d1jofa_          39 DEPISWMTFDHERKNIYGAAM-KKWSSFAVKSPTEIVHEASHPIGGHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKF  117 (365)
T ss_dssp             TCCCSEEEECTTSSEEEEEEB-TEEEEEEEEETTEEEEEEEEECCSSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSS
T ss_pred             CCCCCEEEEcCCCCEEEEEeC-CcEEEEEEeCCCCeEEEeeecCCCCcEEEEECCCCCEEEEEEecCCCCEEEEeEccCC
Confidence            344567999999999998765 4567776554332222221  1223445678888873  33332 345555544321 


Q ss_pred             CeEEEEecCCCCeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEccCCCEEEE
Q 021399           84 GAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIIS  163 (313)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~t  163 (313)
                      +.....+.         +...                 .......          ..........++++.|+|+++++++
T Consensus       118 ~~~~~~~~---------~~~~-----------------~~~~~~~----------~~~~~q~~~h~h~v~~sPdG~~l~v  161 (365)
T d1jofa_         118 AGYGNVFS---------VSET-----------------GKLEKNV----------QNYEYQENTGIHGMVFDPTETYLYS  161 (365)
T ss_dssp             CCEEEEEE---------ECTT-----------------CCEEEEE----------EEEECCTTCCEEEEEECTTSSEEEE
T ss_pred             CCcceeEe---------eeec-----------------ceecCcc----------cCcccCCCCcceEEEECCCCCEEEE
Confidence            11110000         0000                 0000000          0000111234678999999998877


Q ss_pred             eeC-CCeEEEEECCCCceeeecc--cccCceeceEEEEECCCCCEEEEee-CCCcEEEEECCCCc--EEEEEe---c---
Q 021399          164 AGE-DAIVRIWDTETGKLLKESD--KETGHKKTITSLAKAADGSHFLTGS-LDKSAKLWDARTLE--LIKTYV---T---  231 (313)
Q Consensus       164 ~~~-d~~i~lwd~~~~~~~~~~~--~~~~h~~~v~~~~~s~~~~~l~s~s-~dg~i~iwd~~~~~--~~~~~~---~---  231 (313)
                      +.. ...|.+|+......+....  .........+.++|+|+++++.... .+++|.+|+.....  .+....   .   
T Consensus       162 ~d~g~d~v~~~~~~~~g~~~~~~~~~~~~~g~gPr~i~f~pdg~~~yv~~e~~~~V~v~~~~~~~~~~~~~~~~~~~~~~  241 (365)
T d1jofa_         162 ADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPP  241 (365)
T ss_dssp             EETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCT
T ss_pred             eeCCCCEEEEEEccCCCceeeccceeecCCCCceEEEEECCCCceEEEeccCCCEEEEEEecCCCceEEEEeeeeccccc
Confidence            753 4578888754322221111  1112345789999999999875555 58899999987653  222211   0   


Q ss_pred             ------------CCceeEEEeccCCCEEEEccc
Q 021399          232 ------------ERPVNAVTMSPLLDHVVLGGG  252 (313)
Q Consensus       232 ------------~~~~~~~~~~p~~~~~~~~~~  252 (313)
                                  ......+.++|++..++++..
T Consensus       242 ~~~~~~~~~~~~~~~~~~i~~spdG~~lyvsnr  274 (365)
T d1jofa_         242 GIPDRDPETGKGLYRADVCALTFSGKYMFASSR  274 (365)
T ss_dssp             TCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEE
T ss_pred             cccccccccccccCCccceEECCCCCEEEEEcc
Confidence                        012456889999999988743

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.63  E-value=6.9e-07  Score=77.18  Aligned_cols=142  Identities=13%  Similarity=0.164  Sum_probs=85.1

Q ss_pred             EEEccCCCEEEEeeCCCCeEEEeCCCCcEEEEecCC---CCceEEEEECCCCCeEEEee---------CCCcEEEEECCC
Q 021399           16 LKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGH---NGAVWCCDVSRDSMTLITGS---------ADQTAKLWNVET   83 (313)
Q Consensus        16 ~~fs~~g~~l~s~s~d~~i~iw~~~~~~~~~~~~~H---~~~V~~~~~~~~~~~l~s~s---------~D~~v~vWd~~~   83 (313)
                      ..|.++++++. -..||.+.+||..+++....+..+   ...+....||||++.++-..         ..+...++|+.+
T Consensus        22 ~~W~~~~~~~~-~~~~g~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SpD~~~vl~~~~~~~~~r~s~~~~~~i~d~~~  100 (465)
T d1xfda1          22 AKWISDTEFIY-REQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPH  100 (465)
T ss_dssp             CCBSSSSCBCC-CCSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSS
T ss_pred             CEEeCCCcEEE-EeCCCcEEEEECCCCCEEEEEcCccccccccceeEECCCCCeEEEEEcccceeEeeccccEEEEEccC
Confidence            46888888765 456789999999988754334332   23566778999999766543         234455555554


Q ss_pred             CeEEEEecCCCCeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEccCCCEEEE
Q 021399           84 GAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIIS  163 (313)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~t  163 (313)
                      +.......                                                  .....+.+....|+|+|+.+|-
T Consensus       101 ~~~~~l~~--------------------------------------------------~~~~~~~l~~~~wSPDG~~iaf  130 (465)
T d1xfda1         101 GDPQSLDP--------------------------------------------------PEVSNAKLQYAGWGPKGQQLIF  130 (465)
T ss_dssp             CCCEECCC--------------------------------------------------TTCCSCCCSBCCBCSSTTCEEE
T ss_pred             CceeeccC--------------------------------------------------ccCCccccceeeeccCCceEEE
Confidence            43211000                                                  0011123344568888888877


Q ss_pred             eeCCCeEEEEECCCCceeeecccccCce-----------------eceEEEEECCCCCEEEEeeC
Q 021399          164 AGEDAIVRIWDTETGKLLKESDKETGHK-----------------KTITSLAKAADGSHFLTGSL  211 (313)
Q Consensus       164 ~~~d~~i~lwd~~~~~~~~~~~~~~~h~-----------------~~v~~~~~s~~~~~l~s~s~  211 (313)
                      .. ++.|.+.+...+...+....  +..                 ..-.++.|||||++||....
T Consensus       131 v~-~~nl~~~~~~~~~~~~lt~~--g~~~~i~nG~~d~vyeee~~~~~~a~~WSPDgk~iaf~~~  192 (465)
T d1xfda1         131 IF-ENNIYYCAHVGKQAIRVVST--GKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAI  192 (465)
T ss_dssp             EE-TTEEEEESSSSSCCEEEECC--CBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEE
T ss_pred             Ee-cceEEEEecCCCceEEEecc--cCcceeeccccchhhhhhhccccceEEECCCCCeEEEEEe
Confidence            65 45677777766554433211  111                 11256779999999998764

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=98.58  E-value=5.6e-06  Score=68.98  Aligned_cols=179  Identities=7%  Similarity=0.050  Sum_probs=100.6

Q ss_pred             ceeEEEEccCCCEEEEeeCC-CCeEEEeCCC-CcE--EEEec--CCCCceEEEEECCCCCeE-EEeeCCCcEEEEECCCC
Q 021399           12 PLTYLKYNKDGDLLFSCAKD-HTPTVWFADN-GER--LGTYR--GHNGAVWCCDVSRDSMTL-ITGSADQTAKLWNVETG   84 (313)
Q Consensus        12 ~v~~~~fs~~g~~l~s~s~d-~~i~iw~~~~-~~~--~~~~~--~H~~~V~~~~~~~~~~~l-~s~s~D~~v~vWd~~~~   84 (313)
                      .++++.|+|||++++++... ..|.+|+... +..  .....  ........++|+|+++++ ++.-.+++|.+|++..+
T Consensus       146 h~h~v~~sPdG~~l~v~d~g~d~v~~~~~~~~g~~~~~~~~~~~~~g~gPr~i~f~pdg~~~yv~~e~~~~V~v~~~~~~  225 (365)
T d1jofa_         146 GIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPA  225 (365)
T ss_dssp             CEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTT
T ss_pred             cceEEEECCCCCEEEEeeCCCCEEEEEEccCCCceeeccceeecCCCCceEEEEECCCCceEEEeccCCCEEEEEEecCC
Confidence            46899999999999988753 4677776543 322  22222  223456789999999976 44557899999998765


Q ss_pred             eEEEEecCCCCeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEccCCCEEEEe
Q 021399           85 AQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISA  164 (313)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~t~  164 (313)
                      +.......    ..+.+.+..          .          ......         ...+......+.++|++++++++
T Consensus       226 ~~~~~~~~----~~~~~~~~~----------~----------~~~~~~---------~~~~~~~~~~i~~spdG~~lyvs  272 (365)
T d1jofa_         226 THMPVYTH----HSFPLIPPG----------I----------PDRDPE---------TGKGLYRADVCALTFSGKYMFAS  272 (365)
T ss_dssp             TCCEEEEE----EEEESSCTT----------C----------CCBCTT---------TSSBSEEEEEEEECTTSSEEEEE
T ss_pred             CceEEEEe----eeecccccc----------c----------cccccc---------cccccCCccceEECCCCCEEEEE
Confidence            32211100    000000000          0          000000         00112234567789999988776


Q ss_pred             eC------CCeEEEEECCCCceeee---cccccCceeceEEEEECC-CCCEEEEe-eCCCcEEEEECCCC
Q 021399          165 GE------DAIVRIWDTETGKLLKE---SDKETGHKKTITSLAKAA-DGSHFLTG-SLDKSAKLWDARTL  223 (313)
Q Consensus       165 ~~------d~~i~lwd~~~~~~~~~---~~~~~~h~~~v~~~~~s~-~~~~l~s~-s~dg~i~iwd~~~~  223 (313)
                      ..      ...|..|++.....+..   +...........+++++| +|++|+.+ ..++.|.+|+++..
T Consensus       273 nr~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~G~~p~~i~~~p~~G~~l~va~~~s~~v~v~~~~~~  342 (365)
T d1jofa_         273 SRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDE  342 (365)
T ss_dssp             EEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEETT
T ss_pred             cccCCCccceEEEEEEecCCCceeeEeEeeEEEcCCCCccEEEecCCCCCEEEEEeCCCCeEEEEEEeCC
Confidence            42      22377777643222211   111112334567789998 78977665 56799999976543

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=98.57  E-value=4.2e-06  Score=67.79  Aligned_cols=130  Identities=6%  Similarity=0.001  Sum_probs=88.8

Q ss_pred             CCcEEEEecCCCCceEEEEECCCCCeEEEeeCCCcEEEEECCCCeEEEEecCCCCeeEEEeecCCeEEEEECCCceeccc
Q 021399           41 NGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNS  120 (313)
Q Consensus        41 ~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  120 (313)
                      ..+.+.++.... .+..++++|||+++++...+++|..|+........                                
T Consensus        17 ~~~v~~~~p~~~-~~e~iAv~pdG~l~vt~~~~~~I~~i~p~g~~~~~--------------------------------   63 (302)
T d2p4oa1          17 PAKIITSFPVNT-FLENLASAPDGTIFVTNHEVGEIVSITPDGNQQIH--------------------------------   63 (302)
T ss_dssp             CEEEEEEECTTC-CEEEEEECTTSCEEEEETTTTEEEEECTTCCEEEE--------------------------------
T ss_pred             cccEEEECCCCC-CcCCEEECCCCCEEEEeCCCCEEEEEeCCCCEEEE--------------------------------
Confidence            344555554322 47789999999999998889988888865432110                                


Q ss_pred             cceeeeeeeCCCCCCCceEEEecCCCCceEEEEEccCCCEEEEeeCCCeEEEEECCCCce-eeecccccCceeceEEEEE
Q 021399          121 AIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKL-LKESDKETGHKKTITSLAK  199 (313)
Q Consensus       121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~t~~~d~~i~lwd~~~~~~-~~~~~~~~~h~~~v~~~~~  199 (313)
                                            ....+....+++.++++.+++...++.+.+|+...... ...+.. .........+++
T Consensus        64 ----------------------~~~~~~~~gla~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~n~i~~  120 (302)
T d2p4oa1          64 ----------------------ATVEGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTVETLLT-LPDAIFLNGITP  120 (302)
T ss_dssp             ----------------------EECSSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCEEEEEE-CTTCSCEEEEEE
T ss_pred             ----------------------EcCCCCcceEEEcCCCCeEEEecCCceEEEEEecccccceeeccc-cCCccccceeEE
Confidence                                  00123466788999999888888888888887543221 111111 123456788999


Q ss_pred             CCCCCEEEEeeCCCcEEEEECCCCcEE
Q 021399          200 AADGSHFLTGSLDKSAKLWDARTLELI  226 (313)
Q Consensus       200 s~~~~~l~s~s~dg~i~iwd~~~~~~~  226 (313)
                      .+++.++++.+.++.+..+|.+++...
T Consensus       121 ~~~g~~~v~~~~~~~i~~~~~~~~~~~  147 (302)
T d2p4oa1         121 LSDTQYLTADSYRGAIWLIDVVQPSGS  147 (302)
T ss_dssp             SSSSEEEEEETTTTEEEEEETTTTEEE
T ss_pred             ccCCCEEeeccccccceeeeccCCcce
Confidence            999999999888999999998876543

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=98.49  E-value=0.00014  Score=57.71  Aligned_cols=222  Identities=15%  Similarity=0.164  Sum_probs=135.8

Q ss_pred             cceeEEEEccCCCEEEEeeCCCCeEEEeCCCCcEEEEecCC------CCceEEEEECCC-CCeEEE-eeCCCcEEEEECC
Q 021399           11 RPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGH------NGAVWCCDVSRD-SMTLIT-GSADQTAKLWNVE   82 (313)
Q Consensus        11 ~~v~~~~fs~~g~~l~s~s~d~~i~iw~~~~~~~~~~~~~H------~~~V~~~~~~~~-~~~l~s-~s~D~~v~vWd~~   82 (313)
                      .....++++++|+.+++-..++.|++||. +++.+..+...      ...-..+++.++ +..++. .+.++.|..++..
T Consensus        23 ~~P~gvavd~dg~i~VaD~~n~rI~v~d~-~G~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~i~~~~~~  101 (279)
T d1q7fa_          23 TEPSGVAVNAQNDIIVADTNNHRIQIFDK-EGRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYNQY  101 (279)
T ss_dssp             SCEEEEEECTTCCEEEEEGGGTEEEEECT-TSCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEECTT
T ss_pred             CCccEEEEcCCCCEEEEECCCCEEEEEeC-CCCEEEEecccCCCcccccccccccccccccccceeccCCcccccccccc
Confidence            34688999999999888778899999985 46666666321      112234554444 333433 3455677777764


Q ss_pred             CCeEEEEecC--CCCeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEe--cCCCCceEEEEEccCC
Q 021399           83 TGAQLFTFNF--DSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLIL--KGPQGRINRAVWGPLN  158 (313)
Q Consensus        83 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~i~~~~~~~~~  158 (313)
                       ++....+..  ......+.+.+...+.+......       ....  .   +..+..+..+  ..+......+++.+++
T Consensus       102 -g~~~~~~~~~~~~~p~~~avd~~G~i~v~~~~~~-------~~~~--~---~~~g~~~~~~g~~~~~~~~~~i~~d~~g  168 (279)
T d1q7fa_         102 -GQFVRKFGATILQHPRGVTVDNKGRIIVVECKVM-------RVII--F---DQNGNVLHKFGCSKHLEFPNGVVVNDKQ  168 (279)
T ss_dssp             -SCEEEEECTTTCSCEEEEEECTTSCEEEEETTTT-------EEEE--E---CTTSCEEEEEECTTTCSSEEEEEECSSS
T ss_pred             -ccceeecCCCcccccceeccccCCcEEEEeeccc-------eeeE--e---ccCCceeecccccccccccceeeeccce
Confidence             444444432  23345555655555554433210       0000  0   0112222222  2344556778888999


Q ss_pred             CEEEEeeCCCeEEEEECCCCceeeecccccCceeceEEEEECCCCCEEEEeeC-CCcEEEEECCCCcEEEEEecC---Cc
Q 021399          159 RTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSL-DKSAKLWDARTLELIKTYVTE---RP  234 (313)
Q Consensus       159 ~~i~t~~~d~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~-dg~i~iwd~~~~~~~~~~~~~---~~  234 (313)
                      +.+++....+.|++||.. ++.+..+. ..+.......+++.++|+.+++-.. ++.|.+|+. +++.+.++...   ..
T Consensus       169 ~i~v~d~~~~~V~~~d~~-G~~~~~~g-~~g~~~~P~giavD~~G~i~Vad~~~~~~v~~f~~-~G~~~~~~~~~~~~~~  245 (279)
T d1q7fa_         169 EIFISDNRAHCVKVFNYE-GQYLRQIG-GEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQ-DGQLISALESKVKHAQ  245 (279)
T ss_dssp             EEEEEEGGGTEEEEEETT-CCEEEEES-CTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECT-TSCEEEEEEESSCCSC
T ss_pred             eEEeeeccccceeeeecC-Cceeeeec-ccccccCCcccccccCCeEEEEECCCCcEEEEECC-CCCEEEEEeCCCCCCC
Confidence            888888888999999975 55555543 2344556789999999998777554 456999985 57877776432   24


Q ss_pred             eeEEEeccCCCEEEEc
Q 021399          235 VNAVTMSPLLDHVVLG  250 (313)
Q Consensus       235 ~~~~~~~p~~~~~~~~  250 (313)
                      ...+++.|++. ++++
T Consensus       246 p~~vav~~dG~-l~V~  260 (279)
T d1q7fa_         246 CFDVALMDDGS-VVLA  260 (279)
T ss_dssp             EEEEEEETTTE-EEEE
T ss_pred             EeEEEEeCCCc-EEEE
Confidence            67788888874 4444

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=98.44  E-value=4.5e-05  Score=60.71  Aligned_cols=160  Identities=16%  Similarity=0.141  Sum_probs=107.2

Q ss_pred             cceeEEEEccCCCEEEEeeCCCCeEEEeCCCCcEEEEec--CCCCceEEEEECCCCCeEEEeeCCCcEEEEECCCCeEEE
Q 021399           11 RPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYR--GHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLF   88 (313)
Q Consensus        11 ~~v~~~~fs~~g~~l~s~s~d~~i~iw~~~~~~~~~~~~--~H~~~V~~~~~~~~~~~l~s~s~D~~v~vWd~~~~~~~~   88 (313)
                      .....+++.++|..+++....+.+.+++. +++.+.++.  .+-.....+++.++++++++....+.|+++|... +.+.
T Consensus       114 ~~p~~~avd~~G~i~v~~~~~~~~~~~~~-~g~~~~~~g~~~~~~~~~~i~~d~~g~i~v~d~~~~~V~~~d~~G-~~~~  191 (279)
T d1q7fa_         114 QHPRGVTVDNKGRIIVVECKVMRVIIFDQ-NGNVLHKFGCSKHLEFPNGVVVNDKQEIFISDNRAHCVKVFNYEG-QYLR  191 (279)
T ss_dssp             SCEEEEEECTTSCEEEEETTTTEEEEECT-TSCEEEEEECTTTCSSEEEEEECSSSEEEEEEGGGTEEEEEETTC-CEEE
T ss_pred             cccceeccccCCcEEEEeeccceeeEecc-CCceeecccccccccccceeeeccceeEEeeeccccceeeeecCC-ceee
Confidence            44567888888988887777777777764 556666653  4556678889999998888888889999998653 2222


Q ss_pred             EecCCCCeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEccCCCEEEEee-CC
Q 021399           89 TFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAG-ED  167 (313)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~t~~-~d  167 (313)
                      .+..                                                  .+.......+++.++++.+++-. .+
T Consensus       192 ~~g~--------------------------------------------------~g~~~~P~giavD~~G~i~Vad~~~~  221 (279)
T d1q7fa_         192 QIGG--------------------------------------------------EGITNYPIGVGINSNGEILIADNHNN  221 (279)
T ss_dssp             EESC--------------------------------------------------TTTSCSEEEEEECTTCCEEEEECSSS
T ss_pred             eecc--------------------------------------------------cccccCCcccccccCCeEEEEECCCC
Confidence            1110                                                  01112334577888888666543 35


Q ss_pred             CeEEEEECCCCceeeecccccCceeceEEEEECCCCCEEEEeeCCCcEEEEECCCCcE
Q 021399          168 AIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLEL  225 (313)
Q Consensus       168 ~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~  225 (313)
                      +.|.+++. +++.+..+... ........+++.++|..++ ++.++.|++|......+
T Consensus       222 ~~v~~f~~-~G~~~~~~~~~-~~~~~p~~vav~~dG~l~V-~~~n~~v~~fr~~~~~~  276 (279)
T d1q7fa_         222 FNLTIFTQ-DGQLISALESK-VKHAQCFDVALMDDGSVVL-ASKDYRLYIYRYVQLAP  276 (279)
T ss_dssp             CEEEEECT-TSCEEEEEEES-SCCSCEEEEEEETTTEEEE-EETTTEEEEEECSCCCC
T ss_pred             cEEEEECC-CCCEEEEEeCC-CCCCCEeEEEEeCCCcEEE-EeCCCeEEEEEeeeecC
Confidence            57999985 46666554321 2234578899999997554 56789999998776543

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=98.36  E-value=0.00014  Score=58.87  Aligned_cols=200  Identities=11%  Similarity=0.067  Sum_probs=108.4

Q ss_pred             eeEEEEccCCCEEEEeeCCCCeEEEeCCCCcEEEEecCCCC----ceEEEEECCCCCeEEEeeC---------------C
Q 021399           13 LTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNG----AVWCCDVSRDSMTLITGSA---------------D   73 (313)
Q Consensus        13 v~~~~fs~~g~~l~s~s~d~~i~iw~~~~~~~~~~~~~H~~----~V~~~~~~~~~~~l~s~s~---------------D   73 (313)
                      ...+.|+++|..|+.+.....+...+.+............+    ..+.+++.++|++.+|-..               +
T Consensus        73 P~Gl~~~~dg~~l~vad~~~~i~~~~~~g~~~~~~~~~~~g~~~~~pndl~~d~~G~lyvtd~~~~~~~~~~~~~~~~~~  152 (314)
T d1pjxa_          73 PAGCQCDRDANQLFVADMRLGLLVVQTDGTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKF  152 (314)
T ss_dssp             EEEEEECSSSSEEEEEETTTEEEEEETTSCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSC
T ss_pred             ceeEEEeCCCCEEEEEECCCeEEEEeCCCcEEEEEeccccccccCCCcEEEECCCCCEEEecCccCcccccccceeccCC
Confidence            45799999999888887767777788765543211111221    3567899999988777432               2


Q ss_pred             CcEEEEECCCCeEEEEecCCCCeeEEEeecCC-----eEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCC-CC
Q 021399           74 QTAKLWNVETGAQLFTFNFDSPARSVDFAVGD-----KLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGP-QG  147 (313)
Q Consensus        74 ~~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~  147 (313)
                      |.|..++.+ ++.......-.....+.+.++.     .+.+..+..     ..+...++..+-.....+....+.+. .+
T Consensus       153 G~v~~~~~d-g~~~~~~~~~~~pNGi~~~~d~d~~~~~lyv~d~~~-----~~i~~~d~~~~g~~~~~~~~~~~~~~~~~  226 (314)
T d1pjxa_         153 GSIYCFTTD-GQMIQVDTAFQFPNGIAVRHMNDGRPYQLIVAETPT-----KKLWSYDIKGPAKIENKKVWGHIPGTHEG  226 (314)
T ss_dssp             EEEEEECTT-SCEEEEEEEESSEEEEEEEECTTSCEEEEEEEETTT-----TEEEEEEEEETTEEEEEEEEEECCCCSSC
T ss_pred             ceEEEEeec-CceeEeeCCcceeeeeEECCCCCcceeEEEEEeecc-----cceEEeeccCccccceeeEEEEccccccc
Confidence            334444433 2322222211223445555432     122222110     00101111100000000011111111 22


Q ss_pred             ceEEEEEccCCCEEEEeeCCCeEEEEECCCCceeeecccccCceeceEEEEECCCCCE-EEEeeCCCcEEEEECC
Q 021399          148 RINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSH-FLTGSLDKSAKLWDAR  221 (313)
Q Consensus       148 ~i~~~~~~~~~~~i~t~~~d~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~-l~s~s~dg~i~iwd~~  221 (313)
                      ....+++.++|+.+++....+.|.+||...+.....+..   .....++++|.++++. +++.+.+|.|.-.++.
T Consensus       227 ~pdGiavD~~GnlyVa~~~~g~I~~~dp~~g~~~~~i~~---p~~~~t~~afg~d~~~lyVt~~~~g~i~~~~~~  298 (314)
T d1pjxa_         227 GADGMDFDEDNNLLVANWGSSHIEVFGPDGGQPKMRIRC---PFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQ  298 (314)
T ss_dssp             EEEEEEEBTTCCEEEEEETTTEEEEECTTCBSCSEEEEC---SSSCEEEEEECTTSSEEEEEETTTTEEEEEECS
T ss_pred             cceeeEEecCCcEEEEEcCCCEEEEEeCCCCEEEEEEEC---CCCCEEEEEEeCCCCEEEEEECCCCcEEEEECC
Confidence            345688899999888888889999999887765444321   2356789999999874 5666667877777654

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.28  E-value=0.00012  Score=57.43  Aligned_cols=194  Identities=9%  Similarity=-0.004  Sum_probs=114.6

Q ss_pred             ceeEEEEccCCCEEEEeeCCCCeEEEeCCCCcEEEEecCCCCceEEEEECCCCCeEEEeeCCCcEEEEECCCCeEEEEe-
Q 021399           12 PLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTF-   90 (313)
Q Consensus        12 ~v~~~~fs~~g~~l~s~s~d~~i~iw~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~v~vWd~~~~~~~~~~-   90 (313)
                      ....++++++|..+++....+.+++++..+...+....+ .....++++.++++++++-.....+..++.......... 
T Consensus        58 ~p~gvav~~~g~i~v~d~~~~~i~~~~~~~~~~~~~~~~-~~~p~~iavd~~g~i~v~d~~~~~~~~~~~~~~~~~~~~~  136 (260)
T d1rwia_          58 QPQGLAVDGAGTVYVTDFNNRVVTLAAGSNNQTVLPFDG-LNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPF  136 (260)
T ss_dssp             SCCCEEECTTCCEEEEETTTEEEEECTTCSCCEECCCCS-CCSEEEEEECTTCCEEEEEGGGTEEEEECTTCSSCEECCC
T ss_pred             CceEEEEcCCCCEEEeeeeeceeeeeeeccceeeeeeee-eeecccccccccceeEeeccccccccccccccceeeeeee
Confidence            457899999999888877777777776555554433333 245688999999988777666666777776554322211 


Q ss_pred             cCCCCeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEccCCCEEEEeeCCCeE
Q 021399           91 NFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIV  170 (313)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~t~~~d~~i  170 (313)
                      ........+.+.+.+.+.+.....       ..+..+  +. + .................+++.++++.+++....+.|
T Consensus       137 ~~~~~p~~i~~~~~g~~~v~~~~~-------~~i~~~--d~-~-~~~~~~~~~~~~~~p~gi~~d~~g~l~vsd~~~~~i  205 (260)
T d1rwia_         137 TGLNDPDGVAVDNSGNVYVTDTDN-------NRVVKL--EA-E-SNNQVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQV  205 (260)
T ss_dssp             CSCCSCCEEEECTTCCEEEEEGGG-------TEEEEE--CT-T-TCCEEECCCSSCCSEEEEEECTTCCEEEEETTTTEE
T ss_pred             cccCCcceeeecCCCCEeeecccc-------cccccc--cc-c-cceeeeeeccccCCCccceeeeeeeeeeeecCCCEE
Confidence            111233456666655554432211       011111  00 0 011111111233445778899999988888888889


Q ss_pred             EEEECCCCceeeecccccCceeceEEEEECCCCCEEEEeeCCCcEEEEEC
Q 021399          171 RIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDA  220 (313)
Q Consensus       171 ~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~dg~i~iwd~  220 (313)
                      ..++...... .... . ..-.....++++++|+.+++-..++.|+.++.
T Consensus       206 ~~~~~~~~~~-~~~~-~-~~~~~P~~i~~d~~g~l~vad~~~~rI~~i~~  252 (260)
T d1rwia_         206 VKLLAGSTTS-TVLP-F-TGLNTPLAVAVDSDRTVYVADRGNDRVVKLTS  252 (260)
T ss_dssp             EEECTTCSCC-EECC-C-CSCCCEEEEEECTTCCEEEEEGGGTEEEEECC
T ss_pred             EEEeCCCCeE-EEEc-c-CCCCCeEEEEEeCCCCEEEEECCCCEEEEEeC
Confidence            8888654322 1111 1 12235678999999998887676777765544

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=98.20  E-value=0.00012  Score=57.63  Aligned_cols=68  Identities=15%  Similarity=0.087  Sum_probs=47.3

Q ss_pred             EEccC--CCEEEEeeCCCCeEEEeCCCCcEEEEecCCCCceEEEEECCCCCeEEEee-CCC-----cEEEEECCCCeE
Q 021399           17 KYNKD--GDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGS-ADQ-----TAKLWNVETGAQ   86 (313)
Q Consensus        17 ~fs~~--g~~l~s~s~d~~i~iw~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s-~D~-----~v~vWd~~~~~~   86 (313)
                      ..|||  |++++-.+. +.|.+.|++.++.. .+..+.+.+...+|||||+.++-.. .++     .|.+.+..+++.
T Consensus         5 ~~sPdi~G~~v~f~~~-~dl~~~d~~~g~~~-~Lt~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~i~~~~~~~g~~   80 (281)
T d1k32a2           5 LLNPDIHGDRIIFVCC-DDLWEHDLKSGSTR-KIVSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGEI   80 (281)
T ss_dssp             CEEEEEETTEEEEEET-TEEEEEETTTCCEE-EEECSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTEE
T ss_pred             ccCCCCCCCEEEEEeC-CcEEEEECCCCCEE-EEecCCCcccCEEECCCCCEEEEEEeeCCCCCceEEEEEEecCCce
Confidence            35799  998887654 56777798888754 5677778889999999999776432 222     255555555544

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.11  E-value=4.7e-06  Score=71.82  Aligned_cols=147  Identities=13%  Similarity=0.050  Sum_probs=85.2

Q ss_pred             EEccCCCEEEEeeCCCeEEEEECCCCceeeecccccCceeceEEEEECCCCCEEEEe---------eCCCcEEEEECCCC
Q 021399          153 VWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTG---------SLDKSAKLWDARTL  223 (313)
Q Consensus       153 ~~~~~~~~i~t~~~d~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~---------s~dg~i~iwd~~~~  223 (313)
                      .|.+++.++ .-..+|.|.+||+.+++...-+....-....+....+|||+++++..         +..+.+.++|+.++
T Consensus        23 ~W~~~~~~~-~~~~~g~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SpD~~~vl~~~~~~~~~r~s~~~~~~i~d~~~~  101 (465)
T d1xfda1          23 KWISDTEFI-YREQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHG  101 (465)
T ss_dssp             CBSSSSCBC-CCCSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSC
T ss_pred             EEeCCCcEE-EEeCCCcEEEEECCCCCEEEEEcCccccccccceeEECCCCCeEEEEEcccceeEeeccccEEEEEccCC
Confidence            466666544 34567889999998775422222222233456777899999998765         34577889999988


Q ss_pred             cEEEEEec---CCceeEEEeccCCCEEEEcccccCceeEeeccCCCceeeeee-ehhhhhhhccccccc---------cc
Q 021399          224 ELIKTYVT---ERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFF-DKILQEEIGGVKGHF---------GP  290 (313)
Q Consensus       224 ~~~~~~~~---~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~h~---------~~  290 (313)
                      ....-...   ...+....|+|+|..++.....   .++..+...+.. +++- +...+.   .+.|..         +.
T Consensus       102 ~~~~l~~~~~~~~~l~~~~wSPDG~~iafv~~~---nl~~~~~~~~~~-~~lt~~g~~~~---i~nG~~d~vyeee~~~~  174 (465)
T d1xfda1         102 DPQSLDPPEVSNAKLQYAGWGPKGQQLIFIFEN---NIYYCAHVGKQA-IRVVSTGKEGV---IYNGLSDWLYEEEILKT  174 (465)
T ss_dssp             CCEECCCTTCCSCCCSBCCBCSSTTCEEEEETT---EEEEESSSSSCC-EEEECCCBTTT---EEEEECCHHHHHTTSSS
T ss_pred             ceeeccCccCCccccceeeeccCCceEEEEecc---eEEEEecCCCce-EEEecccCcce---eeccccchhhhhhhccc
Confidence            75332211   2345568899999988765432   244444333221 2221 111000   001111         11


Q ss_pred             eeEEEECCCCCeeEEEE
Q 021399          291 INALAFNPDGKRYGFLL  307 (313)
Q Consensus       291 V~~~~fspdgk~~~~~~  307 (313)
                      -.++.||||||+|||.-
T Consensus       175 ~~a~~WSPDgk~iaf~~  191 (465)
T d1xfda1         175 HIAHWWSPDGTRLAYAA  191 (465)
T ss_dssp             SEEEEECTTSSEEEEEE
T ss_pred             cceEEECCCCCeEEEEE
Confidence            25678999999999973

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=98.08  E-value=0.00017  Score=56.74  Aligned_cols=210  Identities=13%  Similarity=-0.003  Sum_probs=101.7

Q ss_pred             cccccccccceeEEEEccCCCEEEEeeC-CC-----CeEEEeCCCCcEEEEecC-------CCCceEEEEECCCCCeEEE
Q 021399            3 PILMKGHERPLTYLKYNKDGDLLFSCAK-DH-----TPTVWFADNGERLGTYRG-------HNGAVWCCDVSRDSMTLIT   69 (313)
Q Consensus         3 ~~~l~~h~~~v~~~~fs~~g~~l~s~s~-d~-----~i~iw~~~~~~~~~~~~~-------H~~~V~~~~~~~~~~~l~s   69 (313)
                      ++.|..+...+...+|||||++|+-... ++     .|.+.+..+++... +..       ........+|+|+|+.++.
T Consensus        33 ~~~Lt~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~i~~~~~~~g~~~~-lt~~~~~~~~~~~~~~~~~~spdg~~l~~  111 (281)
T d1k32a2          33 TRKIVSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGEIKR-ITYFSGKSTGRRMFTDVAGFDPDGNLIIS  111 (281)
T ss_dssp             EEEEECSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTEEEE-CCCCCEEEETTEECSEEEEECTTCCEEEE
T ss_pred             EEEEecCCCcccCEEECCCCCEEEEEEeeCCCCCceEEEEEEecCCceEE-eeecCCCccCccccccccccCCCCCEEEE
Confidence            4456666777888999999999986542 22     36666777776542 222       2234567889999997765


Q ss_pred             eeC------CCcEEEEECCCCeEEEEecCCCCeeEEEeecCCeEEEEECCCceeccc---cceeeeeeeCCCCCCCceEE
Q 021399           70 GSA------DQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNS---AIHVKRIARDPADQGGESVL  140 (313)
Q Consensus        70 ~s~------D~~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~  140 (313)
                      ...      ...+...+...+......  ........+.++................   .........   .... ...
T Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~-~~~  185 (281)
T d1k32a2         112 TDAMQPFSSMTCLYRVENDGINFVPLN--LGPATHILFADGRRVIGRNTFELPHWKGYRGGTRGKIWIE---VNSG-AFK  185 (281)
T ss_dssp             ECTTSSSTTCCEEEEEEGGGTEEEECC--SCSCSEEEEETTEEEEEESCSCCTTSTTCCSTTCCEEEEE---EETT-EEE
T ss_pred             EEccCCCccceeeeeecCCCceeEEec--CCccceeeecCCCeEEEeeccccceeeeeccCCcceeeee---cccc-cee
Confidence            322      122445555544432211  1111222222333333322111000000   000000000   0001 111


Q ss_pred             EecCCCCceEEEEEccCCCEEEEe-e--CCCeEEEEECCCCceeeecccccCceeceEEEEECCCCCEEEEeeCCCcEEE
Q 021399          141 ILKGPQGRINRAVWGPLNRTIISA-G--EDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKL  217 (313)
Q Consensus       141 ~~~~~~~~i~~~~~~~~~~~i~t~-~--~d~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~dg~i~i  217 (313)
                      .............+.++  .++.. .  ....|.++|+..+... .+..  .....+  ..|+|||+.|+- ..++.|.+
T Consensus       186 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~d~~g~~~~-~lt~--~~~~~~--~~~SpDG~~I~f-~~~~~l~~  257 (281)
T d1k32a2         186 KIVDMSTHVSSPVIVGH--RIYFITDIDGFGQIYSTDLDGKDLR-KHTS--FTDYYP--RHLNTDGRRILF-SKGGSIYI  257 (281)
T ss_dssp             EEECCSSCCEEEEEETT--EEEEEECTTSSCEEEEEETTSCSCE-ECCC--CCSSCE--EEEEESSSCEEE-EETTEEEE
T ss_pred             eccCCccccceeeeecc--ccceecccccccceEEEeCCCCceE-Eeec--CCCccc--ccCcCCCCEEEE-EeCCEEEE
Confidence            11122223333444443  23332 2  2345778888765533 2321  112223  358899998775 45788999


Q ss_pred             EECCCCcEEE
Q 021399          218 WDARTLELIK  227 (313)
Q Consensus       218 wd~~~~~~~~  227 (313)
                      +|+++++..+
T Consensus       258 ~d~~~g~~~~  267 (281)
T d1k32a2         258 FNPDTEKIEK  267 (281)
T ss_dssp             ECTTTCCEEE
T ss_pred             EECCCCCEEE
Confidence            9999887643

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=97.93  E-value=0.0029  Score=50.32  Aligned_cols=225  Identities=13%  Similarity=0.035  Sum_probs=133.6

Q ss_pred             eEEEEccC-CCEEEEeeCCCCeEEEeCCCCcEEEEecCCCCceEEEEECCCCCeEEEeeCCCcEEEEECCCCeEEEEecC
Q 021399           14 TYLKYNKD-GDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFNF   92 (313)
Q Consensus        14 ~~~~fs~~-g~~l~s~s~d~~i~iw~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~v~vWd~~~~~~~~~~~~   92 (313)
                      ....|++. +.+..+=-..+.|..||.++++.. .+. ....+.++++.++|.++++ +.+ -+.++|..+++.......
T Consensus        21 Egp~wd~~~~~l~wvDi~~~~I~r~d~~~g~~~-~~~-~~~~~~~i~~~~dg~l~va-~~~-gl~~~d~~tg~~~~l~~~   96 (295)
T d2ghsa1          21 EGPTFDPASGTAWWFNILERELHELHLASGRKT-VHA-LPFMGSALAKISDSKQLIA-SDD-GLFLRDTATGVLTLHAEL   96 (295)
T ss_dssp             EEEEEETTTTEEEEEEGGGTEEEEEETTTTEEE-EEE-CSSCEEEEEEEETTEEEEE-ETT-EEEEEETTTCCEEEEECS
T ss_pred             eCCeEECCCCEEEEEECCCCEEEEEECCCCeEE-EEE-CCCCcEEEEEecCCCEEEE-EeC-ccEEeecccceeeEEeee
Confidence            45678865 445554446788888998888643 222 2456788999888877665 455 478899998876544432


Q ss_pred             C--C---CeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEccCCCEE-EEeeC
Q 021399           93 D--S---PARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTI-ISAGE  166 (313)
Q Consensus        93 ~--~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i-~t~~~  166 (313)
                      .  .   ....+.+.+++.+.+....... ......++++.      .+.. ..+......-+.+.|+++++.+ ++-+.
T Consensus        97 ~~~~~~~~~nd~~vd~~G~iw~~~~~~~~-~~~~g~l~~~~------~g~~-~~~~~~~~~~Ng~~~s~d~~~l~~~dt~  168 (295)
T d2ghsa1          97 ESDLPGNRSNDGRMHPSGALWIGTMGRKA-ETGAGSIYHVA------KGKV-TKLFADISIPNSICFSPDGTTGYFVDTK  168 (295)
T ss_dssp             STTCTTEEEEEEEECTTSCEEEEEEETTC-CTTCEEEEEEE------TTEE-EEEEEEESSEEEEEECTTSCEEEEEETT
T ss_pred             ecCCCcccceeeEECCCCCEEEEeccccc-cccceeEeeec------CCcE-EEEeeccCCcceeeecCCCceEEEeecc
Confidence            1  1   2345555566665554321100 00111111111      1111 1111222344678899998755 45566


Q ss_pred             CCeEEEEECCCCc--eee---ecccccCceeceEEEEECCCCCEEEEeeCCCcEEEEECCCCcEEEEEecC-CceeEEEe
Q 021399          167 DAIVRIWDTETGK--LLK---ESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTE-RPVNAVTM  240 (313)
Q Consensus       167 d~~i~lwd~~~~~--~~~---~~~~~~~h~~~v~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~-~~~~~~~~  240 (313)
                      .+.|..+++....  ...   .+....+.......+++.++|+..++.-..+.|..||. .++.+..+..+ ..+.+++|
T Consensus       169 ~~~I~~~~~d~~~~~~~~~~~~~~~~~~~~g~pdG~~vD~~GnlWva~~~~g~V~~~dp-~G~~~~~i~lP~~~~T~~~F  247 (295)
T d2ghsa1         169 VNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDT-DGNHIARYEVPGKQTTCPAF  247 (295)
T ss_dssp             TCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECT-TCCEEEEEECSCSBEEEEEE
T ss_pred             cceeeEeeecccccccccceEEEeccCcccccccceEEcCCCCEEeeeeCCCceEEecC-CCcEeeEecCCCCceEEEEE
Confidence            7888888764221  110   11111223445778889999998887777889999996 57888888654 45788888


Q ss_pred             c-cCCCEEEEcc
Q 021399          241 S-PLLDHVVLGG  251 (313)
Q Consensus       241 ~-p~~~~~~~~~  251 (313)
                      - |+.+.++++.
T Consensus       248 GG~d~~~LyvTt  259 (295)
T d2ghsa1         248 IGPDASRLLVTS  259 (295)
T ss_dssp             ESTTSCEEEEEE
T ss_pred             eCCCCCEEEEEE
Confidence            4 6777777654

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=97.92  E-value=0.0032  Score=50.64  Aligned_cols=234  Identities=10%  Similarity=-0.001  Sum_probs=128.6

Q ss_pred             CCceEEEEECCCCCeEEEeeCCCcEEEEECCCCeEEEEe-cCCCCeeEEEeecCCeEEEEECCCceeccccceeeeeeeC
Q 021399           52 NGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTF-NFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARD  130 (313)
Q Consensus        52 ~~~V~~~~~~~~~~~l~s~s~D~~v~vWd~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  130 (313)
                      ...+..++|.++|++.++-...+.|..|++.+++..... ........+.+.+++.+.++.......   ...+..+  +
T Consensus        39 ~~~lEG~~~D~~G~Ly~~D~~~g~I~ri~p~g~~~~~~~~~~~~~p~gla~~~dG~l~va~~~~~~~---~~~i~~~--~  113 (319)
T d2dg1a1          39 GLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHKDGRLFVCYLGDFKS---TGGIFAA--T  113 (319)
T ss_dssp             CCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECTTSCEEEEECTTSSS---CCEEEEE--C
T ss_pred             CcCcEeCEECCCCCEEEEECCCCEEEEEECCCCeEEEEEeCCCCCeeEEEECCCCCEEEEecCCCcc---ceeEEEE--c
Confidence            345678999999998888778899999999877654433 344456778888877766654321100   0000000  0


Q ss_pred             CCCCCCceEEEec--CCCCceEEEEEccCCCEEEEeeC------CCeEEEEECCCCceeeecccccCceeceEEEEECCC
Q 021399          131 PADQGGESVLILK--GPQGRINRAVWGPLNRTIISAGE------DAIVRIWDTETGKLLKESDKETGHKKTITSLAKAAD  202 (313)
Q Consensus       131 ~~~~~~~~~~~~~--~~~~~i~~~~~~~~~~~i~t~~~------d~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~  202 (313)
                      ..  .........  ......+.+.+.++|+.+++...      .+.+..++...+. +..+.   ..-...+.++|+++
T Consensus       114 ~~--~~~~~~~~~~~~~~~~~nd~~~d~~G~l~vtd~~~~~~~~~g~v~~~~~dg~~-~~~~~---~~~~~pnGia~s~d  187 (319)
T d2dg1a1         114 EN--GDNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRT-VTPII---QNISVANGIALSTD  187 (319)
T ss_dssp             TT--SCSCEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCC-EEEEE---EEESSEEEEEECTT
T ss_pred             CC--CceeeeeccCCCcccCCcceeEEeccceeecccccccccCcceeEEEecccce-eEEEe---eccceeeeeeeccc
Confidence            00  011111111  11234678889999987776432      2346556654332 22221   11234577999999


Q ss_pred             CCEE-EEeeCCCcEEEEECCCC-cEEEEE----e----cCCceeEEEeccCCCEEEEcccccCceeEeeccCCCceeeee
Q 021399          203 GSHF-LTGSLDKSAKLWDARTL-ELIKTY----V----TERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKF  272 (313)
Q Consensus       203 ~~~l-~s~s~dg~i~iwd~~~~-~~~~~~----~----~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  272 (313)
                      ++.| ++-+..+.|..||++.. ......    .    .......+++.++++ ++++.. ....+..++.. ++.. ..
T Consensus       188 g~~lyvad~~~~~I~~~d~~~~g~~~~~~~~~~~~~~~~~~~PdGl~vD~~G~-l~Va~~-~~g~V~~~~p~-G~~l-~~  263 (319)
T d2dg1a1         188 EKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDN-LYVAMY-GQGRVLVFNKR-GYPI-GQ  263 (319)
T ss_dssp             SSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCC-EEEEEE-TTTEEEEECTT-SCEE-EE
T ss_pred             cceEEEecccCCceEEEEEcCCCceeccccceeeeccCCccceeeeeEcCCCC-EEEEEc-CCCEEEEECCC-CcEE-EE
Confidence            9865 55566889999987642 211111    1    112245688888876 444322 23345555543 3321 22


Q ss_pred             eehhhhhhhccccccccceeEEEECCCCCeeEE
Q 021399          273 FDKILQEEIGGVKGHFGPINALAFNPDGKRYGF  305 (313)
Q Consensus       273 ~~~~~~~~~~~~~~h~~~V~~~~fspdgk~~~~  305 (313)
                      +.... +    ..++...+++++|.|++..+-.
T Consensus       264 i~~P~-~----~~~~~~~~~~~~~~~~~~~~~~  291 (319)
T d2dg1a1         264 ILIPG-R----DEGHMLRSTHPQFIPGTNQLII  291 (319)
T ss_dssp             EECTT-G----GGTCSCBCCEEEECTTSCEEEE
T ss_pred             EeCCC-c----CCCcCceeeeEEEeCCCCEEEE
Confidence            22211 1    1245667889999998877544

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=97.14  E-value=0.037  Score=43.56  Aligned_cols=185  Identities=16%  Similarity=0.095  Sum_probs=107.3

Q ss_pred             cceeEEEEccCCCEEEEeeCCCCeEEEeCCCCcEEEEec--CC--CCceEEEEECCCCCeEEEeeC----CCcEEEEECC
Q 021399           11 RPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYR--GH--NGAVWCCDVSRDSMTLITGSA----DQTAKLWNVE   82 (313)
Q Consensus        11 ~~v~~~~fs~~g~~l~s~s~d~~i~iw~~~~~~~~~~~~--~H--~~~V~~~~~~~~~~~l~s~s~----D~~v~vWd~~   82 (313)
                      ..+.++.+.++|.++++ +.+ -+.++|.++++...-..  ..  ....+.+.+.|+|++.++...    .+.-.+|.+.
T Consensus        59 ~~~~~i~~~~dg~l~va-~~~-gl~~~d~~tg~~~~l~~~~~~~~~~~~nd~~vd~~G~iw~~~~~~~~~~~~g~l~~~~  136 (295)
T d2ghsa1          59 FMGSALAKISDSKQLIA-SDD-GLFLRDTATGVLTLHAELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA  136 (295)
T ss_dssp             SCEEEEEEEETTEEEEE-ETT-EEEEEETTTCCEEEEECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE
T ss_pred             CCcEEEEEecCCCEEEE-EeC-ccEEeecccceeeEEeeeecCCCcccceeeEECCCCCEEEEeccccccccceeEeeec
Confidence            35678899999877775 444 47788998887533221  11  124688889999987666432    2344567666


Q ss_pred             CCeEEEEecCCCCeeEEEeecCCeEEEEE-CCCceeccccceeeeeeeCCC--CCCC--ceEEEecCCCCceEEEEEccC
Q 021399           83 TGAQLFTFNFDSPARSVDFAVGDKLAVIT-TDPFMELNSAIHVKRIARDPA--DQGG--ESVLILKGPQGRINRAVWGPL  157 (313)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~--~~~~--~~~~~~~~~~~~i~~~~~~~~  157 (313)
                      .++.......-.....+.++++++.+... +..       ..++....+..  ...+  .......+..+....+++..+
T Consensus       137 ~g~~~~~~~~~~~~Ng~~~s~d~~~l~~~dt~~-------~~I~~~~~d~~~~~~~~~~~~~~~~~~~~g~pdG~~vD~~  209 (295)
T d2ghsa1         137 KGKVTKLFADISIPNSICFSPDGTTGYFVDTKV-------NRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAE  209 (295)
T ss_dssp             TTEEEEEEEEESSEEEEEECTTSCEEEEEETTT-------CEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTT
T ss_pred             CCcEEEEeeccCCcceeeecCCCceEEEeeccc-------ceeeEeeecccccccccceEEEeccCcccccccceEEcCC
Confidence            66554433322334566677766543332 211       11111111111  0111  112223334455677888999


Q ss_pred             CCEEEEeeCCCeEEEEECCCCceeeecccccCceeceEEEEEC-CCCCEEEE
Q 021399          158 NRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKA-ADGSHFLT  208 (313)
Q Consensus       158 ~~~i~t~~~d~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s-~~~~~l~s  208 (313)
                      |+..++.-..+.|..||. +++.+.++...   ...+++++|- +|.+.|+.
T Consensus       210 GnlWva~~~~g~V~~~dp-~G~~~~~i~lP---~~~~T~~~FGG~d~~~Lyv  257 (295)
T d2ghsa1         210 GHIWNARWGEGAVDRYDT-DGNHIARYEVP---GKQTTCPAFIGPDASRLLV  257 (295)
T ss_dssp             SCEEEEEETTTEEEEECT-TCCEEEEEECS---CSBEEEEEEESTTSCEEEE
T ss_pred             CCEEeeeeCCCceEEecC-CCcEeeEecCC---CCceEEEEEeCCCCCEEEE
Confidence            998887777889999996 57777665432   2358888885 66665543

>d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=96.76  E-value=0.094  Score=45.40  Aligned_cols=75  Identities=17%  Similarity=0.047  Sum_probs=49.1

Q ss_pred             CeEEEEECCCCceeeeccc-ccCceeceEEEEECCCCCEEEEeeCCCcEEEEECCCCcEEEEEecCCceeE--EEeccCC
Q 021399          168 AIVRIWDTETGKLLKESDK-ETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTERPVNA--VTMSPLL  244 (313)
Q Consensus       168 ~~i~lwd~~~~~~~~~~~~-~~~h~~~v~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~--~~~~p~~  244 (313)
                      |.|.-+|+++++.+=+... .....+.     .+..+..++.|+.||.++-+|.++++.+-++.....+.+  +.+..++
T Consensus       444 G~l~AiD~~TG~~~W~~~~~~~~~~g~-----l~TagglVf~G~~dg~l~A~Da~tGe~lW~~~l~~~~~a~P~ty~~dG  518 (571)
T d2ad6a1         444 GQIRAFDLTTGKAKWTKWEKFAAWGGT-----LYTKGGLVWYATLDGYLKALDNKDGKELWNFKMPSGGIGSPMTYSFKG  518 (571)
T ss_dssp             EEEEEECTTTCCEEEEEEESSCCCSBC-----EEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETT
T ss_pred             ccEEEeccCCCceeeEcCCCCCCCcce-----eEecCCEEEEECCCCeEEEEECCCCcEEEEEECCCCceecceEEEECC
Confidence            6788889888876422211 1111111     122356788899999999999999999988876554443  5566677


Q ss_pred             CEE
Q 021399          245 DHV  247 (313)
Q Consensus       245 ~~~  247 (313)
                      .+.
T Consensus       519 kqY  521 (571)
T d2ad6a1         519 KQY  521 (571)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            644

>d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Paracoccus denitrificans [TaxId: 266]

Probab=96.66  E-value=0.011  Score=48.86  Aligned_cols=94  Identities=11%  Similarity=-0.037  Sum_probs=66.6

Q ss_pred             cCCCEEEEe-eCCCeEEEEECCCCceeeecccccCceeceEEEEEC--CCCCEEEEeeCCC------------------c
Q 021399          156 PLNRTIISA-GEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKA--ADGSHFLTGSLDK------------------S  214 (313)
Q Consensus       156 ~~~~~i~t~-~~d~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s--~~~~~l~s~s~dg------------------~  214 (313)
                      ++|++++.. ..+++|.+.|+.+.++.+.+..  .....+..++..  |+..+++.++.+.                  .
T Consensus        97 yDGrylFVNDkan~RVAvIdl~~fkt~kIi~i--Pn~~~~HG~r~~~~p~T~YV~~~~e~~vP~pndg~~l~d~~~y~~~  174 (459)
T d1fwxa2          97 YDGRFLFMNDKANTRVARVRCDVMKCDAILEI--PNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNV  174 (459)
T ss_dssp             EEEEEEEEEETTTTEEEEEETTTTEEEEEEEC--SSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGG-EEEE
T ss_pred             cceeEEEEEcCCCceEEEEECcceeeeEEEec--CCCCCCceeecccCCCeEEEEccCccccccCCCCccccchhhcceE
Confidence            456666554 5788999999998876543322  223445655554  5566777766532                  3


Q ss_pred             EEEEECCCCcEEEEEecCCceeEEEeccCCCEEEEcc
Q 021399          215 AKLWDARTLELIKTYVTERPVNAVTMSPLLDHVVLGG  251 (313)
Q Consensus       215 i~iwd~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~  251 (313)
                      +..+|.++.+...++........++++|++..+++++
T Consensus       175 ~t~ID~~tm~V~~QV~V~g~ld~~~~s~dGK~af~Ts  211 (459)
T d1fwxa2         175 FTAVDADKWEVAWQVLVSGNLDNCDADYEGKWAFSTS  211 (459)
T ss_dssp             EEEEETTTTEEEEEEEESSCCCCEEECSSSSEEEEEE
T ss_pred             EEEEecCCceEEEEeeeCCChhccccCCCCCEEEEEe
Confidence            5678999999888887777778899999999998875

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=96.65  E-value=0.12  Score=41.79  Aligned_cols=99  Identities=11%  Similarity=0.110  Sum_probs=59.7

Q ss_pred             eeEEEEccCCCEEEEeeCCC-----------CeEEEeCCCCcEE--EEe-cCCCCceEEEEECCCCCeEEEeeCC-CcEE
Q 021399           13 LTYLKYNKDGDLLFSCAKDH-----------TPTVWFADNGERL--GTY-RGHNGAVWCCDVSRDSMTLITGSAD-QTAK   77 (313)
Q Consensus        13 v~~~~fs~~g~~l~s~s~d~-----------~i~iw~~~~~~~~--~~~-~~H~~~V~~~~~~~~~~~l~s~s~D-~~v~   77 (313)
                      +.......+|+.++-|+.+.           .+.+||..+++-.  ... ..|.....+.++.+++++++.|+.+ .++.
T Consensus        22 ~~~a~~~~~gkv~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~i~v~Gg~~~~~~~  101 (387)
T d1k3ia3          22 AAAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTS  101 (387)
T ss_dssp             SEEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEE
T ss_pred             cEEEEEeeCCEEEEEEeecCcccCCCCCceeEEEEEECCCCcEeecCCCCCCcccceeEEEEecCCcEEEeecCCCccee
Confidence            33444567899888888531           2668999987632  122 2233333355678899999988765 6899


Q ss_pred             EEECCCCeEEEEecC--CCCeeEEEeecCCeEEEEE
Q 021399           78 LWNVETGAQLFTFNF--DSPARSVDFAVGDKLAVIT  111 (313)
Q Consensus        78 vWd~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~  111 (313)
                      +||+.+..-......  ...........++++.+..
T Consensus       102 ~yd~~~~~w~~~~~~~~~r~~~~~~~~~dG~v~v~G  137 (387)
T d1k3ia3         102 LYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIG  137 (387)
T ss_dssp             EEEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEEC
T ss_pred             EecCccCcccccccccccccccceeeecCCceeeec
Confidence            999987654332222  1223344455555655554

>d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Pseudomonas putida, hk5 [TaxId: 303]

Probab=96.14  E-value=0.26  Score=42.40  Aligned_cols=77  Identities=13%  Similarity=0.120  Sum_probs=49.0

Q ss_pred             CCeEEEEECCCCceeeecccccCceeceEEEEECCCCCEEEEeeCCCcEEEEECCCCcEEEEEecCCceeE--EEeccCC
Q 021399          167 DAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTERPVNA--VTMSPLL  244 (313)
Q Consensus       167 d~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~--~~~~p~~  244 (313)
                      .|.|.-||+.+++.+=+.....    ....-.+.-.+..++.|+.||.++-+|.++++.+-++.....+..  +.+..++
T Consensus       437 ~G~l~A~D~~tGk~~W~~~~~~----~~~gg~l~TagglVF~G~~dg~l~A~Da~tGe~LW~~~l~~~~~~~P~ty~~dG  512 (560)
T d1kv9a2         437 SGALLAWDPVKQKAAWKVPYPT----HWNGGTLSTAGNLVFQGTAAGQMHAYSADKGEALWQFEAQSGIVAAPMTFELAG  512 (560)
T ss_dssp             EEEEEEEETTTTEEEEEEEESS----SCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETT
T ss_pred             ccceEEEeCCCCeEeeeccCCC----CCCCceeEECCCEEEEECCCCcEEEEECCCCcEeEEEECCCCccccCEEEEECC
Confidence            3678889999887643222111    111111223466788899999999999999999988875443332  4555566


Q ss_pred             CEE
Q 021399          245 DHV  247 (313)
Q Consensus       245 ~~~  247 (313)
                      .+.
T Consensus       513 kqy  515 (560)
T d1kv9a2         513 RQY  515 (560)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            543

>d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Comamonas testosteroni [TaxId: 285]

Probab=95.96  E-value=0.16  Score=43.94  Aligned_cols=75  Identities=17%  Similarity=0.075  Sum_probs=48.0

Q ss_pred             CeEEEEECCCCceeeecccccCceeceEEEEECCCCCEEEEeeCCCcEEEEECCCCcEEEEEecCCceeE--EEeccCCC
Q 021399          168 AIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTERPVNA--VTMSPLLD  245 (313)
Q Consensus       168 ~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~--~~~~p~~~  245 (313)
                      |.|.-||+.+++.+=+......-....    .+..|..++.|+.||.++.+|.++++.+-++.....+..  +.+..++.
T Consensus       457 G~l~AiD~~tGk~~W~~~~~~p~~gg~----lstagglVF~G~~dg~l~A~Da~TGe~LW~~~~~~~~~~~P~ty~~~Gk  532 (573)
T d1kb0a2         457 GRLLAWDPVAQKAAWSVEHVSPWNGGT----LTTAGNVVFQGTADGRLVAYHAATGEKLWEAPTGTGVVAAPSTYMVDGR  532 (573)
T ss_dssp             EEEEEEETTTTEEEEEEEESSSCCCCE----EEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTE
T ss_pred             ccEEEeCCCCCceEeeecCCCCCCCce----EEEcCCEEEEECCCCeEEEEECCCCcEeEEEECCCCccccCEEEEECCE
Confidence            568888888887643222111111111    223567888899999999999999999988875543332  45555665


Q ss_pred             E
Q 021399          246 H  246 (313)
Q Consensus       246 ~  246 (313)
                      +
T Consensus       533 Q  533 (573)
T d1kb0a2         533 Q  533 (573)
T ss_dssp             E
T ss_pred             E
Confidence            3

>d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=95.95  E-value=0.43  Score=41.09  Aligned_cols=69  Identities=9%  Similarity=0.007  Sum_probs=43.4

Q ss_pred             CEEEEeeCCCCeEEEeCCCCcEEEEecCCC----CceEEEEECCCCCeEEEee-----CCCcEEEEECCCCeEEEEec
Q 021399           23 DLLFSCAKDHTPTVWFADNGERLGTYRGHN----GAVWCCDVSRDSMTLITGS-----ADQTAKLWNVETGAQLFTFN   91 (313)
Q Consensus        23 ~~l~s~s~d~~i~iw~~~~~~~~~~~~~H~----~~V~~~~~~~~~~~l~s~s-----~D~~v~vWd~~~~~~~~~~~   91 (313)
                      ..|+.++.|+.+.--|.++++.+....-..    ..+++--.-.++..++..+     .+|.|+-+|+.+++.++...
T Consensus       116 ~~i~~~~~~g~l~alda~tG~~~w~~~~~~~~~~~~~t~~p~v~~~~vivg~~~~~~~~~G~v~a~D~~TG~~~W~~~  193 (571)
T d2ad6a1         116 GQIVKKQANGHLLALDAKTGKINWEVEVCDPKVGSTLTQAPFVAKDTVLMGCSGAELGVRGAVNAFDLKTGELKWRAF  193 (571)
T ss_dssp             TEEEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEETTEEEEECBCGGGTCCCEEEEEETTTCCEEEEEE
T ss_pred             CeEEEEeCCCcEEeeehhhhhhhccccccccccccceeecCeEeCCeEEEeeccccccccCcEEEEECCCCcEEEEEe
Confidence            466778888988888999999876654221    1111100111343333332     36889999999999998754

>d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Comamonas testosteroni [TaxId: 285]

Probab=95.62  E-value=0.58  Score=40.21  Aligned_cols=68  Identities=15%  Similarity=0.134  Sum_probs=42.6

Q ss_pred             CEEEEeeCCCCeEEEeCCCCcEEEEecCC--C-CceEEEEECC--CCCeEEEeeC------CCcEEEEECCCCeEEEEec
Q 021399           23 DLLFSCAKDHTPTVWFADNGERLGTYRGH--N-GAVWCCDVSR--DSMTLITGSA------DQTAKLWNVETGAQLFTFN   91 (313)
Q Consensus        23 ~~l~s~s~d~~i~iw~~~~~~~~~~~~~H--~-~~V~~~~~~~--~~~~l~s~s~------D~~v~vWd~~~~~~~~~~~   91 (313)
                      ..++.++.|+.+.-.|.++|+.+......  . ..+. +.-.|  -+..++.++.      .|.|+.+|.++++.++.+.
T Consensus       129 ~~v~~~t~~g~l~alda~tG~~~W~~~~~~~~~~~~~-~~~~p~v~~~~vivg~~~~~~~~~G~v~a~D~~TG~~~W~~~  207 (573)
T d1kb0a2         129 GKVYVGAWDGRLIALDAATGKEVWHQNTFEGQKGSLT-ITGAPRVFKGKVIIGNGGAEYGVRGYITAYDAETGERKWRWF  207 (573)
T ss_dssp             TEEEEECTTSEEEEEETTTCCEEEEEETTTTCCSSCB-CCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEE
T ss_pred             CcEEEEecccceeeeccccccceecccCccCCcceEE-eecceEEEeccEEEeeccccccccceEEEEecCCccceeeee
Confidence            35666778888888899999987665432  1 1111 01011  1224444432      4689999999999998764

>d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Ethanol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=95.44  E-value=0.68  Score=39.84  Aligned_cols=76  Identities=20%  Similarity=0.196  Sum_probs=50.3

Q ss_pred             CCeEEEEECCCCceeeecccccCceeceEEEEECCCCCEEEEeeCCCcEEEEECCCCcEEEEEecCCceeE--EEeccCC
Q 021399          167 DAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTERPVNA--VTMSPLL  244 (313)
Q Consensus       167 d~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~--~~~~p~~  244 (313)
                      .|.|.-+|+.+++.+=+....    ..+..-..+..+..++.|+.||.++-+|.+||+.+-++..+..+..  +.+..++
T Consensus       465 ~G~l~AiD~~TG~i~W~~~~~----~p~~~g~lstagglVF~Gt~dg~l~A~Da~TGe~LW~~~~~~~~~~~P~ty~~~G  540 (582)
T d1flga_         465 VGSLRAMDPVSGKVVWEHKEH----LPLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKELWKFQTGSGIVSPPITWEQDG  540 (582)
T ss_dssp             SEEEEEECTTTCCEEEEEEES----SCCCSCCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETT
T ss_pred             CCeEEEEcCCCCcEEeecCCC----CCCccceeEEcCCeEEEeCCCCeEEEEECCCCcEeEEEECCCCccccCEEEEECC
Confidence            467888999888764332211    1111111234567888899999999999999999988876544332  6666677


Q ss_pred             CE
Q 021399          245 DH  246 (313)
Q Consensus       245 ~~  246 (313)
                      .+
T Consensus       541 ~q  542 (582)
T d1flga_         541 EQ  542 (582)
T ss_dssp             EE
T ss_pred             EE
Confidence            54

>d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: Serum paraoxonase/arylesterase 1, PON1
domain: Serum paraoxonase/arylesterase 1, PON1
species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=95.20  E-value=0.55  Score=37.36  Aligned_cols=60  Identities=10%  Similarity=0.230  Sum_probs=38.0

Q ss_pred             eceEEEEECCCCCEEEEe-eCCCcEEEEECCCCcEE---EEEecCCceeEEEeccCCCEEEEcc
Q 021399          192 KTITSLAKAADGSHFLTG-SLDKSAKLWDARTLELI---KTYVTERPVNAVTMSPLLDHVVLGG  251 (313)
Q Consensus       192 ~~v~~~~~s~~~~~l~s~-s~dg~i~iwd~~~~~~~---~~~~~~~~~~~~~~~p~~~~~~~~~  251 (313)
                      ...+.++++||+++|+.+ +..++|+.|++.....+   ..+..+...-.+.+.+....+.+++
T Consensus       206 ~~pNGI~~s~d~~~lyVa~t~~~~i~~y~~~~~~~l~~~~~~~l~~~pDNi~~d~~~g~lwva~  269 (340)
T d1v04a_         206 DFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVLSFDTLVDNISVDPVTGDLWVGC  269 (340)
T ss_dssp             SSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEECSSEEEEEEECTTTCCEEEEE
T ss_pred             CccceeEECCCCCEEEEEeCCCCeEEEEEeCCCcccceEEEecCCCCCCccEEecCCCEEEEEE
Confidence            457889999999876554 56788999988754322   2223344456677766555555543

>d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Pseudomonas putida, hk5 [TaxId: 303]

Probab=95.20  E-value=0.8  Score=39.18  Aligned_cols=69  Identities=16%  Similarity=0.248  Sum_probs=44.3

Q ss_pred             CCEEEEeeCCCCeEEEeCCCCcEEEEecCCCCce-EEEEECC---CCCeEEEeeC------CCcEEEEECCCCeEEEEec
Q 021399           22 GDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAV-WCCDVSR---DSMTLITGSA------DQTAKLWNVETGAQLFTFN   91 (313)
Q Consensus        22 g~~l~s~s~d~~i~iw~~~~~~~~~~~~~H~~~V-~~~~~~~---~~~~l~s~s~------D~~v~vWd~~~~~~~~~~~   91 (313)
                      +..++.+..|+.+.-.|..+++.+..+..+...- ..+.-.|   ++ .++.++.      .|.|.-+|.++++.++.+.
T Consensus       117 ~~~v~~~~~~g~l~Alda~tG~~~w~~~~~~~~~~~~~~~~p~v~~~-~vivg~~~~~~~~~G~v~a~D~~TG~~~W~~~  195 (560)
T d1kv9a2         117 GDKVYVGTLDGRLIALDAKTGKAIWSQQTTDPAKPYSITGAPRVVKG-KVIIGNGGAEYGVRGFVSAYDADTGKLAWRFY  195 (560)
T ss_dssp             BTEEEEECTTSEEEEEETTTCCEEEEEECSCTTSSCBCCSCCEEETT-EEEECCBCTTTCCBCEEEEEETTTCCEEEEEE
T ss_pred             CCeEEEEeCCCEEEEEECCCCcEEeccCccCcccceeeeeeeeeecC-cccccccceeccccceEEEEECCCceEEeeee
Confidence            4467778889988888999999988775422110 0111111   23 3333332      3679999999999998875

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=94.94  E-value=0.25  Score=39.69  Aligned_cols=120  Identities=16%  Similarity=0.177  Sum_probs=70.1

Q ss_pred             ceEEEEEccCCCEEEEeeCCC-----------eEEEEECCCCceeeecccccCceeceEEEEECCCCCEEEEeeCC-CcE
Q 021399          148 RINRAVWGPLNRTIISAGEDA-----------IVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLD-KSA  215 (313)
Q Consensus       148 ~i~~~~~~~~~~~i~t~~~d~-----------~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d-g~i  215 (313)
                      ++...+...+++.++.|+.+.           .+.+||+.+++-.........|.....+.++.++|..++.|+.+ ..+
T Consensus        21 ~~~~a~~~~~gkv~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~i~v~Gg~~~~~~  100 (387)
T d1k3ia3          21 PAAAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKT  100 (387)
T ss_dssp             CSEEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCE
T ss_pred             ccEEEEEeeCCEEEEEEeecCcccCCCCCceeEEEEEECCCCcEeecCCCCCCcccceeEEEEecCCcEEEeecCCCcce
Confidence            334444555677777777421           37799998765321111112233333456788999999998765 579


Q ss_pred             EEEECCCCcEEEEE--ecCCceeEEEeccCCCEEEEcccccC----ceeEeeccCCCc
Q 021399          216 KLWDARTLELIKTY--VTERPVNAVTMSPLLDHVVLGGGQDA----SAVTTTDHRAGK  267 (313)
Q Consensus       216 ~iwd~~~~~~~~~~--~~~~~~~~~~~~p~~~~~~~~~~~~~----~~~~~~~~~~~~  267 (313)
                      .+||.++..-...-  ...+.-..++..+++..++++|....    ..+..+|...+.
T Consensus       101 ~~yd~~~~~w~~~~~~~~~r~~~~~~~~~dG~v~v~GG~~~~~~~~~~v~~yd~~~~~  158 (387)
T d1k3ia3         101 SLYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKT  158 (387)
T ss_dssp             EEEEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTE
T ss_pred             eEecCccCcccccccccccccccceeeecCCceeeeccccccccccceeeeecCCCCc
Confidence            99999876543221  12233456777788887777764332    234555655443

>d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylobacterium extorquens [TaxId: 408]

Probab=94.51  E-value=1.3  Score=38.19  Aligned_cols=67  Identities=19%  Similarity=0.204  Sum_probs=45.7

Q ss_pred             CEEEEeeCCCCeEEEeCCCCcEEEEecCCCC----ceEE-EEECCCCCeEEEeeC------CCcEEEEECCCCeEEEEec
Q 021399           23 DLLFSCAKDHTPTVWFADNGERLGTYRGHNG----AVWC-CDVSRDSMTLITGSA------DQTAKLWNVETGAQLFTFN   91 (313)
Q Consensus        23 ~~l~s~s~d~~i~iw~~~~~~~~~~~~~H~~----~V~~-~~~~~~~~~l~s~s~------D~~v~vWd~~~~~~~~~~~   91 (313)
                      .+++.++.|+.+.--|.++++++..+.....    .+++ ..+.  +..++.+..      .|.|+-+|+++++.++.+.
T Consensus       122 ~~v~~~t~dg~l~Alda~tG~~~w~~~~~d~~~~~~~t~~P~v~--~~~vivg~~~~e~~~~G~v~A~Da~TG~~~W~~~  199 (596)
T d1w6sa_         122 ALILKTQLDGNVAALNAETGETVWKVENSDIKVGSTLTIAPYVV--KDKVIIGSSGAELGVRGYLTAYDVKTGEQVWRAY  199 (596)
T ss_dssp             CEEEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEE--TTEEEECCBCGGGTCCCEEEEEETTTCCEEEEEE
T ss_pred             eEEEEEeCCCCeEeeccccCceeccccccccccccccccCCcEE--CCeEEEeeccccccccCceEEEECCCCcEEEEee
Confidence            4688899999998889999999887753211    1111 1111  234555443      4899999999999998764

>d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Paracoccus denitrificans [TaxId: 266]

Probab=94.11  E-value=1.2  Score=36.39  Aligned_cols=206  Identities=12%  Similarity=0.049  Sum_probs=115.6

Q ss_pred             EEEEcc---CCCEEEEee-CCCCeEEEeCCCCcEEEEecC-CCCceEEEEECCC--CCeEEEeeCCC-------------
Q 021399           15 YLKYNK---DGDLLFSCA-KDHTPTVWFADNGERLGTYRG-HNGAVWCCDVSRD--SMTLITGSADQ-------------   74 (313)
Q Consensus        15 ~~~fs~---~g~~l~s~s-~d~~i~iw~~~~~~~~~~~~~-H~~~V~~~~~~~~--~~~l~s~s~D~-------------   74 (313)
                      .++|..   ||++|+... .+.+|-+-|+++-++.+...- -...+..++..++  -.+++..+.+.             
T Consensus        89 ~~S~TdGtyDGrylFVNDkan~RVAvIdl~~fkt~kIi~iPn~~~~HG~r~~~~p~T~YV~~~~e~~vP~pndg~~l~d~  168 (459)
T d1fwxa2          89 HMSFTEGKYDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDV  168 (459)
T ss_dssp             EEEEETTEEEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCG
T ss_pred             cccccCCccceeEEEEEcCCCceEEEEECcceeeeEEEecCCCCCCceeecccCCCeEEEEccCccccccCCCCccccch
Confidence            466654   899888876 578888889999887554432 2334555555443  34666555532             


Q ss_pred             -----cEEEEECCCCeEEEEecCCCCeeEEEeecCCeEEEEECCC-ce-----eccccce----eee-------------
Q 021399           75 -----TAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDP-FM-----ELNSAIH----VKR-------------  126 (313)
Q Consensus        75 -----~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-----~~~~~~~----~~~-------------  126 (313)
                           .+-+.|..+++..+..........+.+.++++.+.+.+-. ..     .+.....    +.+             
T Consensus       169 ~~y~~~~t~ID~~tm~V~~QV~V~g~ld~~~~s~dGK~af~TsyNSE~g~~l~e~ta~e~D~i~V~n~~rie~av~~Gk~  248 (459)
T d1fwxa2         169 ANYVNVFTAVDADKWEVAWQVLVSGNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDY  248 (459)
T ss_dssp             G-EEEEEEEEETTTTEEEEEEEESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCS
T ss_pred             hhcceEEEEEecCCceEEEEeeeCCChhccccCCCCCEEEEEeccccCCcchhhcccccceEEEEechHHhHHhhhcCCc
Confidence                 2567899998888777666666677788877777665421 10     0000000    000             


Q ss_pred             -------eeeCCCCCCCceEEEecCCCCceEEEEEccCCCEEEEe-eCCCeEEEEECCCCcee-------e-ecccccCc
Q 021399          127 -------IARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISA-GEDAIVRIWDTETGKLL-------K-ESDKETGH  190 (313)
Q Consensus       127 -------~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~t~-~~d~~i~lwd~~~~~~~-------~-~~~~~~~h  190 (313)
                             +...........+..+.-+. ..+.+..+|+|++++++ .-+.++.++|++.-..+       + .+......
T Consensus       249 ~eingV~VVD~~~~~~~~v~~yIPVpK-sPHGV~vSPDGKyi~VaGKLs~tVSViD~~Ki~~~~~~~~~~~~~~~~e~el  327 (459)
T d1fwxa2         249 QELNGVKVVDGRKEASSLFTRYIPIAN-NPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPEL  327 (459)
T ss_dssp             EEETTEEEEECSGG--CSSEEEEEEES-SCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCC-GGGGEEECCBC
T ss_pred             EEeCCceeecccccCCcceeEEEecCC-CCCceEECCCCCEEEEeCCcCCcEEEEEehhhhhhhcccCCccccEEeeccc
Confidence                   00000000001111111111 12457789999987655 46889999998632111       0 00000112


Q ss_pred             eeceEEEEECCCCCEEEEeeCCCcEEEEECC
Q 021399          191 KKTITSLAKAADGSHFLTGSLDKSAKLWDAR  221 (313)
Q Consensus       191 ~~~v~~~~~s~~~~~l~s~s~dg~i~iwd~~  221 (313)
                      .-....-+|+.+|+-..|--.|.+|--|++.
T Consensus       328 glgPLht~fd~~g~aytslfids~v~kw~~~  358 (459)
T d1fwxa2         328 GLGPLHTAFDGRGNAYTSLFLDSQVVKWNIE  358 (459)
T ss_dssp             CSCEEEEEECTTSEEEEEETTTTEEEEEEHH
T ss_pred             CcCccccccCCCceEEEEeeccceEEEEecc
Confidence            2334566789988766666689999999974

>d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Clathrin heavy-chain terminal domain
family: Clathrin heavy-chain terminal domain
domain: Clathrin heavy-chain terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=93.40  E-value=1.3  Score=34.34  Aligned_cols=213  Identities=10%  Similarity=0.031  Sum_probs=116.5

Q ss_pred             EEEEccCCCEEEEeeCCCCeEEEeCCCCcEEEEecCCCCceEEEEECCCCCe-EEEeeCCCcEEEEECCCC-eEEEEecC
Q 021399           15 YLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMT-LITGSADQTAKLWNVETG-AQLFTFNF   92 (313)
Q Consensus        15 ~~~fs~~g~~l~s~s~d~~i~iw~~~~~~~~~~~~~H~~~V~~~~~~~~~~~-l~s~s~D~~v~vWd~~~~-~~~~~~~~   92 (313)
                      +.-.+|..+.|+--+ ...+.|+|+++.+.++.+.-.+. |.-=.|-.+..+ ++|   +..|.=|+++.. ++...+.-
T Consensus        67 sAIMhP~~~IiALra-g~~LQiFnletK~klks~~~~e~-VvfWkWis~~~L~lVT---~taVYHW~~~g~s~P~k~fdR  141 (327)
T d1utca2          67 SAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMTDD-VTFWKWISLNTVALVT---DNAVYHWSMEGESQPVKMFDR  141 (327)
T ss_dssp             EEEECSSSSEEEEEE-TTEEEEEETTTTEEEEEEECSSC-CCEEEESSSSEEEEEC---SSEEEEEESSSSCCCEEEEEC
T ss_pred             hhhcCCCCcEEEEec-CCeEEEEehhHhhhhceEEcCCC-cEEEEecCCCEEEEEc---CCceEEEcccCCCCchhhhhh
Confidence            466789888888776 56899999999999888876554 433445433332 333   347999999542 34444321


Q ss_pred             -----CCCeeEEEeecCCeEEEEEC--CCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEccC--C-CEEE
Q 021399           93 -----DSPARSVDFAVGDKLAVITT--DPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPL--N-RTII  162 (313)
Q Consensus        93 -----~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~-~~i~  162 (313)
                           ...+......++.+-+++..  ..-..+.+.++++...       ......++||-+....+...-.  . ..|+
T Consensus       142 ~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~i~G~mQLYS~e-------r~~sQ~ieGhaa~F~~~~~~g~~~~~~lf~  214 (327)
T d1utca2         142 HSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVD-------RKVSQPIEGHAASFAQFKMEGNAEESTLFC  214 (327)
T ss_dssp             CGGGTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETT-------TTEEEEECCSEEEEEEECCTTCSSCEEEEE
T ss_pred             cccccCceEEEEEECCCCCEEEEEeEecCCCceeEEEEEEEec-------cCcCccccceeeeeEEEEcCCCCCCceEEE
Confidence                 12233444445555443321  0001122333333221       2233455666543333322211  1 1222


Q ss_pred             Ee---eCCCeEEEEECCCCc----ee--ee---cccccCceeceEEEEECCCCCEEEEeeCCCcEEEEECCCCcEEEEEe
Q 021399          163 SA---GEDAIVRIWDTETGK----LL--KE---SDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYV  230 (313)
Q Consensus       163 t~---~~d~~i~lwd~~~~~----~~--~~---~~~~~~h~~~v~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~  230 (313)
                      .+   ...++++|.++....    ..  +.   +.....-.+=.-++..++.-..+..-+.-|.+.++|++|+.++..-.
T Consensus       215 fa~r~~~~~kLhIiEig~~~~g~~~f~kk~vdi~fppea~~DFPvamqvs~kygiiyviTK~G~i~lyDleTgt~i~~nR  294 (327)
T d1utca2         215 FAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNR  294 (327)
T ss_dssp             EEEEETTEEEEEEEECSCCCTTCCCCCCEEEECCCCTTCTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTCCEEEEEE
T ss_pred             EEECCCCCcEEEEEEcCCCccCCCCCcceeEEEECCccccCCcEEEEEeeccCCEEEEEecCcEEEEEEcccccEEEEee
Confidence            22   233689999875421    11  00   11111223345566777777788899999999999999999987654


Q ss_pred             c-CCceeEEE
Q 021399          231 T-ERPVNAVT  239 (313)
Q Consensus       231 ~-~~~~~~~~  239 (313)
                      - ...+...+
T Consensus       295 Is~~~iF~~a  304 (327)
T d1utca2         295 ISGETIFVTA  304 (327)
T ss_dssp             CCSSCEEEEE
T ss_pred             cCCCceEEec
Confidence            2 33444433

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=92.50  E-value=1.6  Score=33.04  Aligned_cols=211  Identities=8%  Similarity=-0.004  Sum_probs=117.9

Q ss_pred             ccccccceeEEEEccCCCEEEEee-CCCCeEEEeCCCCcEEEEecCCCCceEEEEECCCCC-eEEEeeCCCcEEEEECCC
Q 021399            6 MKGHERPLTYLKYNKDGDLLFSCA-KDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSM-TLITGSADQTAKLWNVET   83 (313)
Q Consensus         6 l~~h~~~v~~~~fs~~g~~l~s~s-~d~~i~iw~~~~~~~~~~~~~H~~~V~~~~~~~~~~-~l~s~s~D~~v~vWd~~~   83 (313)
                      +..+...+..++|++..++|+-.. .++.|+..+++.+.....+..--..+.++++..-++ +..+-...+.|.+.+++.
T Consensus        31 ~~~~~~~~~~ld~D~~~~~iywsd~~~~~I~~~~l~g~~~~~v~~~~~~~p~~iAvD~~~~~lY~~d~~~~~I~~~~~dg  110 (263)
T d1npea_          31 LHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDG  110 (263)
T ss_dssp             EEEEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred             cccCCCcEEEEEEEeCCCEEEEEECCCCeEEEEEcccCCcEEEEEeccccccEEEEeccCCeEEEeccCCCEEEEEecCC
Confidence            334445577899998888777664 456677777766554444444345688889876444 445556678999999876


Q ss_pred             CeEEEEecC-CCCeeEEEeecCCeEEEEE-CCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEccCCCEE
Q 021399           84 GAQLFTFNF-DSPARSVDFAVGDKLAVIT-TDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTI  161 (313)
Q Consensus        84 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i  161 (313)
                      ......... ...+..+.+.|....+... ....     ...+....   .+...... .....-.....+++.+.++++
T Consensus       111 ~~~~~l~~~~l~~p~~l~vdp~~g~ly~t~~~~~-----~~~I~r~~---~dG~~~~~-i~~~~~~~P~glaiD~~~~~l  181 (263)
T d1npea_         111 TQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRD-----NPKIETSH---MDGTNRRI-LAQDNLGLPNGLTFDAFSSQL  181 (263)
T ss_dssp             CSCEEEECSSCSSEEEEEEETTTTEEEEEECCSS-----SCEEEEEE---TTSCCCEE-EECTTCSCEEEEEEETTTTEE
T ss_pred             ceEEEEecccccCCcEEEEecccCcEEEeecCCC-----CcEEEEec---CCCCCcee-eeeecccccceEEEeecCcEE
Confidence            654333332 2345666666644333322 2110     00111111   11111112 122223345678887776655


Q ss_pred             -EEeeCCCeEEEEECCCCceeeecccccCceeceEEEEECCCCCEEEEeeCCCcEEEEECCCCcEEEEEe
Q 021399          162 -ISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYV  230 (313)
Q Consensus       162 -~t~~~d~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~  230 (313)
                       .+-...+.|...|+.... ...+....   ....++++. ++....+-...+.|...|..+++.+..+.
T Consensus       182 Yw~d~~~~~I~~~~~~g~~-~~~v~~~~---~~P~~lav~-~~~lYwtd~~~~~I~~~~~~~g~~~~~~~  246 (263)
T d1npea_         182 CWVDAGTHRAECLNPAQPG-RRKVLEGL---QYPFAVTSY-GKNLYYTDWKTNSVIAMDLAISKEMDTFH  246 (263)
T ss_dssp             EEEETTTTEEEEEETTEEE-EEEEEECC---CSEEEEEEE-TTEEEEEETTTTEEEEEETTTTEEEEEEC
T ss_pred             EEEeCCCCEEEEEECCCCC-eEEEECCC---CCcEEEEEE-CCEEEEEECCCCEEEEEECCCCccceEEC
Confidence             444567889888886433 22222111   123567665 34444554567888888998888776654

>d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Prolyl oligopeptidase, N-terminal domain
domain: Prolyl oligopeptidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=92.03  E-value=2.6  Score=34.36  Aligned_cols=56  Identities=14%  Similarity=0.141  Sum_probs=37.1

Q ss_pred             ceeEEEEccCCCEEEEe-e----CCCCeEEEeCCCCcEEE-EecCCCCceEEEEECCCCCeEEE
Q 021399           12 PLTYLKYNKDGDLLFSC-A----KDHTPTVWFADNGERLG-TYRGHNGAVWCCDVSRDSMTLIT   69 (313)
Q Consensus        12 ~v~~~~fs~~g~~l~s~-s----~d~~i~iw~~~~~~~~~-~~~~H~~~V~~~~~~~~~~~l~s   69 (313)
                      .+...++|||+++++-+ +    .-..+++.|+++++.+. .+..  .....++|.+|++.|+-
T Consensus       126 ~~~~~~~Spd~~~la~s~d~~G~e~~~l~v~Dl~tg~~~~~~i~~--~~~~~~~W~~D~~~~~Y  187 (430)
T d1qfma1         126 ALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLER--VKFSCMAWTHDGKGMFY  187 (430)
T ss_dssp             EEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEE--ECSCCEEECTTSSEEEE
T ss_pred             eecceEecCCCCEEEEEeccccCchheeEEeccCcceeccccccc--ccccceEEcCCCCEEEE
Confidence            34467889999988843 2    23468899999998653 3321  11135789999986653

>d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Prolyl oligopeptidase, N-terminal domain
domain: Prolyl oligopeptidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=91.14  E-value=0.88  Score=37.35  Aligned_cols=61  Identities=11%  Similarity=0.102  Sum_probs=41.6

Q ss_pred             ceeceEEEEECCCCCEEEEe-eCC----CcEEEEECCCCcEEEEEecCCceeEEEeccCCCEEEEc
Q 021399          190 HKKTITSLAKAADGSHFLTG-SLD----KSAKLWDARTLELIKTYVTERPVNAVTMSPLLDHVVLG  250 (313)
Q Consensus       190 h~~~v~~~~~s~~~~~l~s~-s~d----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~  250 (313)
                      +.-.+..+++|||+++++-+ +.+    ..++++|+++++.+...........++|.+++..++..
T Consensus       123 ~~~~~~~~~~Spd~~~la~s~d~~G~e~~~l~v~Dl~tg~~~~~~i~~~~~~~~~W~~D~~~~~Y~  188 (430)
T d1qfma1         123 GTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLERVKFSCMAWTHDGKGMFYN  188 (430)
T ss_dssp             SCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEEECSCCEEECTTSSEEEEE
T ss_pred             ccceecceEecCCCCEEEEEeccccCchheeEEeccCcceecccccccccccceEEcCCCCEEEEE
Confidence            44445567889999987743 222    36899999999877543322223578899998887654

>d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Ethanol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=91.04  E-value=0.38  Score=41.54  Aligned_cols=61  Identities=16%  Similarity=0.292  Sum_probs=44.8

Q ss_pred             CCeEEEeCCCCcEEEEecCCCCceEEEEECCCCCeEEEeeCCCcEEEEECCCCeEEEEecCC
Q 021399           32 HTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFNFD   93 (313)
Q Consensus        32 ~~i~iw~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~v~vWd~~~~~~~~~~~~~   93 (313)
                      |.+.-+|..+++.+.+...+. ++++-.++..+.+++.|+.||.++.+|.++|+.++.+...
T Consensus       466 G~l~AiD~~TG~i~W~~~~~~-p~~~g~lstagglVF~Gt~dg~l~A~Da~TGe~LW~~~~~  526 (582)
T d1flga_         466 GSLRAMDPVSGKVVWEHKEHL-PLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKELWKFQTG  526 (582)
T ss_dssp             EEEEEECTTTCCEEEEEEESS-CCCSCCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECS
T ss_pred             CeEEEEcCCCCcEEeecCCCC-CCccceeEEcCCeEEEeCCCCeEEEEECCCCcEeEEEECC
Confidence            557777888888887776443 2222223345678888999999999999999999888653

>d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Clathrin heavy-chain terminal domain
family: Clathrin heavy-chain terminal domain
domain: Clathrin heavy-chain terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=90.98  E-value=2.7  Score=32.52  Aligned_cols=123  Identities=14%  Similarity=0.048  Sum_probs=77.9

Q ss_pred             CCCeEEEEECCCCce-eeecccccCceeceEEEEECCCCCEEEEeeCCCcEEEEECCCCcEEEEEecCCceeEEEeccCC
Q 021399          166 EDAIVRIWDTETGKL-LKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTERPVNAVTMSPLL  244 (313)
Q Consensus       166 ~d~~i~lwd~~~~~~-~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~p~~  244 (313)
                      +...+-|.|+.+... .++..       .--+.-.+|..+.||.-+ ..++.++|+++.+.+..+....++....|-...
T Consensus        43 ~~~~VvIidl~n~~~~~Rrpi-------~AdsAIMhP~~~IiALra-g~~LQiFnletK~klks~~~~e~VvfWkWis~~  114 (327)
T d1utca2          43 EQAQVVIIDMNDPSNPIRRPI-------SADSAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMTDDVTFWKWISLN  114 (327)
T ss_dssp             TEEEEEEEETTSTTSCEEEEC-------CCSEEEECSSSSEEEEEE-TTEEEEEETTTTEEEEEEECSSCCCEEEESSSS
T ss_pred             CCceEEEEECCCCCcceeccc-------chhhhhcCCCCcEEEEec-CCeEEEEehhHhhhhceEEcCCCcEEEEecCCC
Confidence            345788999876543 33222       112223457777766655 568999999999999999887777666664433


Q ss_pred             CEEEEcccccCceeEeeccCCCceeeeeeehhhhhhhccccccccceeEEEECCCCCeeEEEE
Q 021399          245 DHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKRYGFLL  307 (313)
Q Consensus       245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~fspdgk~~~~~~  307 (313)
                      .--+++    ...+|-|+.....-..+.||...     .+  -+..|..-.-++|+|+++.+-
T Consensus       115 ~L~lVT----~taVYHW~~~g~s~P~k~fdR~~-----~L--~~~QIInY~~d~~~kW~~l~G  166 (327)
T d1utca2         115 TVALVT----DNAVYHWSMEGESQPVKMFDRHS-----SL--AGCQIINYRTDAKQKWLLLTG  166 (327)
T ss_dssp             EEEEEC----SSEEEEEESSSSCCCEEEEECCG-----GG--TTCEEEEEEECTTSCEEEEEE
T ss_pred             EEEEEc----CCceEEEcccCCCCchhhhhhcc-----cc--cCceEEEEEECCCCCEEEEEe
Confidence            322333    23466666544344556777432     12  256888888899999988764

>d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylobacterium extorquens [TaxId: 408]

Probab=89.64  E-value=5.5  Score=34.02  Aligned_cols=75  Identities=17%  Similarity=0.165  Sum_probs=48.2

Q ss_pred             CeEEEEECCCCceeeecccccCceeceEEEEECCCCCEEEEeeCCCcEEEEECCCCcEEEEEecCCceeE--EEeccCCC
Q 021399          168 AIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTERPVNA--VTMSPLLD  245 (313)
Q Consensus       168 ~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~--~~~~p~~~  245 (313)
                      |.|.-||+.+++.+=+...    ......-..+..|..++.|+.||.++-+|.++++.+-++.....+.+  +.+..++.
T Consensus       453 G~l~A~D~~TG~~~W~~~~----~~~~~gg~lsTagglVF~G~~Dg~l~A~Da~TGe~LW~~~~~~~~~a~P~tY~~dGk  528 (596)
T d1w6sa_         453 GQIKAYNAITGDYKWEKME----RFAVWGGTMATAGDLVFYGTLDGYLKARDSDTGDLLWKFKIPSGAIGYPMTYTHKGT  528 (596)
T ss_dssp             EEEEEECTTTCCEEEEEEE----SSCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTE
T ss_pred             ceEEEEeCCCCceecccCC----CCCCccceeEecCCEEEEECCCCeEEEEECCCCcEeeEEECCCCcccCCeEEEECCE
Confidence            6788999988876422111    11111111223467788899999999999999999988865443322  55555665


Q ss_pred             E
Q 021399          246 H  246 (313)
Q Consensus       246 ~  246 (313)
                      +
T Consensus       529 Q  529 (596)
T d1w6sa_         529 Q  529 (596)
T ss_dssp             E
T ss_pred             E
Confidence            4