Citrus Sinensis ID: 021420

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310--
Protein Sequence
MESSASGSSKRARVPGNGTQIPSCLVDGCTADLGKCRDYHRRHKVCEIHSKTPKVTIHGREQRFCQQCSRFHSLEEFDEGKRSCRKRLDGHNRRRRKPQPDSLSLNSGRFLSNPQGTKFIPFGSPELFSTSAAPPVWSGIVKAKTDEMLHNNHLQLDFTNGNLFCGSSSHDDKEGKQFPFLEGAATSALPRASSVCQPLLTANSSLGNCGSSSQKVFCNRLNRVVHSSRALSLLSSPQPQTRGVGLNHTAQTDSKLIPPAQSLITSLNYSRLGMVVQPSNASLHDPDTFEIGPARDESSTSGTHQSLSFSWE
Secondary Structure (PSIPRED)
cccccccccccccccccccccccEEEccccccccccHHHHHccccccccccccEEEEccEEEEEEcccccccccccccccHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccccccccEEEEccccccHHHHHHHHHHccEHHHcccccEEEEcccHHHHHHHHHHHccHHHHccccHHHHHHHHccHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEcccccccccccccccccccc
Coil and Loop (DISEMBL)
messasgsskrarvpgngtqipsclvdgctadlgkcrdyhrrhkvceihsktpkvtihgREQRFCQQcsrfhsleefdegKRSCRKrldghnrrrrkpqpdslslnsgrflsnpqgtkfipfgspelfstsaappvwsGIVKAktdemlhnnhlqldftngnlfcgssshddkegkqfpflegaatsalprassvcqplltansslgncgsssqkvFCNRLNRVVHSSRalsllsspqpqtrgvglnhtaqtdsklippaqslitslnysrlgmvvqpsnaslhdpdtfeigpardesstsgthqslsfswe
Flexible Loop (DISEMBL)
messasgsskrarvpgngtqipsclVDGCTADLGKCRDYHrrhkvceihsktpkvtihgrEQRFCQQCSRFhsleefdegkrscrkrldghnrrrrkpqpdslslnsgrflsnPQGTKFIPFGSPELFSTSAAPPVWSGIVKAKTDEMLHNNHLQLDFTNGNLFCGSSSHDDKEGKQFPFLEGAATSALPRASSVCQPLLTANSSLGNCGSSSQKVFCNRLNRVVHSSRALsllsspqpqtrgVGLNHtaqtdsklippAQSLITSLNYSRLGMVVQPSNASLHDPDTFEIGpardesstsgthqslsfswe
Low Complexity Region (SEG)
MESSASGSSKRARVPGNGTQIPSCLVDGCTADLGKCRDYHRRHKVCEIHSKTPKVTIHGREQRFCQQCSRFHSLEEFDEGKRSCRKRLDGHNRRRRKPQPDSLSLNSGRFLSNPQGTKFIPFGSPELFSTSAAPPVWSGIVKAKTDEMLHNNHLQLDFTNGNLFCGSSSHDDKEGKQFPFLEGAATSALPRASSVCQPLLTANSSLGNCGSSSQKVFCNRLNRVVHSSRALSLLSSPQPQTRGVGLNHTAQTDSKLIPPAQSLITSLNYSRLGMVVQPSNASLHDPDTFEIGPARDESSTSGTHQSLSFSWE
Disordered region (IsUnstruct)
********************IPSCLVDGCTADLGKCRDYHRRHKVCEIHSKTPKVTIHGREQRFCQQCSRFH**********************************************FIPFGSPELFSTSAAPPVWSGIVKAKTDEMLHNNHLQLDFTNGNLFCG*****************************C**LL**************KVFCNRLNRVVH************************************LITSLNYSRLGMV*************************************
Disordered Region (DISOPRED)
*************************VDGCTADLGKCRDYHRRHKVCEIHSKTPKVTIHGREQRFCQQCSRFHSLEEFDEGKR********************************************************************************************************************************************************************************************************************************LSFS**
Disordered Region (DISEMBL)
**************PGNGTQIPSCLVDGCTADLGKCRDYHRRHKVCEIHSKTPKVTIHGREQRFCQQCSRFHSLEEFDEGKRSCRKRLDG*************SLNSGRFLSNPQGTKFIPFGSPELFSTSAAPPVWSGIVKAKTDEMLHNNHLQLDFTNGNLFCGSSSHDDKEGKQFPFLEGAATSALPRASSVCQPLLTANSSLGNCGSSSQKVFCNRLNRVVHSSRALSLLSSPQPQTRGVGLNHTAQTDSKLIPPAQSLITSLNYSRLGMVVQPSNASLHDPDTFEIGP*******************
Disordered Region (DISPRO)
*******************QIPSCLVDGCTADLGKCRDYHRRHKVCEIHSKTPKVTIHGREQRFCQQCSRFHSLEEFDEGKRSCRKRL**********************************G****************************************************************************************************************************************************LGMV******SLHDPD*************************
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MESSASGSSKRARVPGNGTQIPSCLVDGCTADLGKCRDYHRRHKVCEIHSKTPKVTIHGREQRFCQQCSRFHSLEEFDEGKRSCRKRLDGHNRRRRKPQPDSLSLNSGRFLSNPQGTKFIPFGSPELFSTSAAPPVWSGIVKAKTDEMLHNNHLQLDFTNGNLFCGSSSHDDKEGKQFPFLEGAATSALPRASSVCQPLLTANSSLGNCGSSSQKVFCNRLNRVVHSSRALSLLSSPQPQTRGVGLNHTAQTDSKLIPPAQSLITSLNYSRLGMVVQPSNASLHDPDTFEIGPARDESSTSGTHQSLSFSWE
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	312	2.2.26 [Sep-21-2011]
Q6YZE8	455	Squamosa promoter-binding	yes	no	0.759	0.520	0.470	3e-52
Q0J0K1	472	Squamosa promoter-binding	no	no	0.493	0.326	0.547	3e-43
P0DI11	359	Squamosa promoter-binding	yes	no	0.576	0.501	0.487	1e-41
B9DI20	359	Squamosa promoter-binding	yes	no	0.576	0.501	0.487	1e-41
Q0JGI1	412	Squamosa promoter-binding	no	no	0.381	0.288	0.640	3e-38
Q2R3Y1	352	Putative squamosa promote	no	no	0.442	0.392	0.487	7e-36
Q8S9L0	396	Squamosa promoter-binding	no	no	0.496	0.391	0.457	2e-32
Q700C2	988	Squamosa promoter-binding	no	no	0.266	0.084	0.686	4e-31
Q9S7P5	927	Squamosa promoter-binding	no	no	0.365	0.122	0.527	6e-31
Q75LH6	969	Squamosa promoter-binding	no	no	0.294	0.094	0.641	1e-30

>sp|Q6YZE8|SPL16_ORYSJ Squamosa promoter-binding-like protein 16 OS=Oryza sativa subsp. japonica GN=SPL16 PE=2 SV=1

 Score =  205 bits (522), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 129/274 (47%), Positives = 161/274 (58%), Gaps = 37/274 (13%)

Query: 20  QIPSCLVDGCTADLGKCRDYHRRHKVCEIHSKTPKVTIHGREQRFCQQCSRFHSLEEFDE 79
           Q PSC VDGC  DL KCRDYHRRHKVCE HSKTP V + GRE RFCQQCSRFH L+EFDE
Sbjct: 114 QCPSCAVDGCKEDLSKCRDYHRRHKVCEAHSKTPLVVVSGREMRFCQQCSRFHLLQEFDE 173

Query: 80  GKRSCRKRLDGHNRRRRKPQPDSLSLNSGRFLSNPQGTKFIPFGSPELFSTSAAPPVWSG 139
            KRSCRKRLDGHNRRRRKPQPD   +NS  +L++ QG +F PF +P   ++      W+G
Sbjct: 174 AKRSCRKRLDGHNRRRRKPQPD--PMNSASYLASQQGARFSPFATPRPEAS------WTG 225

Query: 140 IVKAKTDEMLHNNHLQLDF---TNGNLFCGSSSHDDKEGKQFPFLE--------GAATSA 188
           ++  KT+E  +  H Q+     +    F GS+S     G++FPFL+        GA    
Sbjct: 226 MI--KTEESPYYTHHQIPLGISSRQQHFVGSTSDG---GRRFPFLQEGEISFGTGAGAGG 280

Query: 189 LP-------RASSVCQPLL----TANSSLGNCGSSSQKVFCN-RLNRVVHSSRALSLLSS 236
           +P        A+SVCQPLL          G  GS   K+F +  L +V+ S  ALSLLS+
Sbjct: 281 VPMDQAAAAAAASVCQPLLKTVAPPPPPHGGGGSGGGKMFSDGGLTQVLDSDCALSLLSA 340

Query: 237 PQPQTR-GVGLNHTAQTDSKLIPPAQSLITSLNY 269
           P   T   VG        ++ IP AQ LI+ L +
Sbjct: 341 PANSTAIDVGGGRVVVQPTEHIPMAQPLISGLQF 374

Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity). May be involved in panicle development.
Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q0J0K1|SPL18_ORYSJ Squamosa promoter-binding-like protein 18 OS=Oryza sativa subsp. japonica GN=SPL18 PE=2 SV=1

 Score =  176 bits (445), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 93/170 (54%), Positives = 109/170 (64%), Gaps = 16/170 (9%)

Query: 20  QIPSCLVDGCTADLGKCRDYHRRHKVCEIHSKTPKVTIHGREQRFCQQCSRFHSLEEFDE 79
           Q PSC VDGC ADL K RDYHRRHKVCE HSKTP V + GRE RFCQQCSRFH L EFDE
Sbjct: 111 QCPSCAVDGCKADLSKHRDYHRRHKVCEPHSKTPVVVVSGREMRFCQQCSRFHLLGEFDE 170

Query: 80  GKRSCRKRLDGHNRRRRKPQPDSLSLNSGRFLSNPQGTKFIPFGSPELFSTSAAPPVWSG 139
            KRSCRKRLDGHNRRRRKPQ DS+S  SG F+++ QGT+F  F  P         P W G
Sbjct: 171 AKRSCRKRLDGHNRRRRKPQADSMS--SGSFMTSQQGTRFASFTPPR------PEPSWPG 222

Query: 140 IVKAKTDEMLHNNHL--------QLDFTNGNLFCGSSSHDDKEGKQFPFL 181
           I+K++      ++H         Q  F        +++   KEG++FPFL
Sbjct: 223 IIKSEETPYYSHHHHPHPVMTSRQPHFVGSPSSATTAAFSPKEGRRFPFL 272

Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity). May be involved in panicle development.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|P0DI11|SP13B_ARATH Squamosa promoter-binding-like protein 13B OS=Arabidopsis thaliana GN=SPL13B PE=3 SV=1

 Score =  170 bits (431), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 97/199 (48%), Positives = 123/199 (61%), Gaps = 19/199 (9%)

Query: 16  GNGT---QIPSCLVDGCTADLGKCRDYHRRHKVCEIHSKTPKVTIHGREQRFCQQCSRFH 72
           GNG    Q+P CLVDGC +D   CR+YH+RHKVC++HSKTP VTI+G +QRFCQQCSRFH
Sbjct: 90  GNGVGTNQMPICLVDGCDSDFSNCREYHKRHKVCDVHSKTPVVTINGHKQRFCQQCSRFH 149

Query: 73  SLEEFDEGKRSCRKRLDGHNRRRRKPQPDSLSLNSGRFLSNPQGTKFIPF--GSPELFST 130
           +LEEFDEGKRSCRKRLDGHNRRRRKPQP+ +      F +  QG+K + F  GS    +T
Sbjct: 150 ALEEFDEGKRSCRKRLDGHNRRRRKPQPEHIG-RPANFFTGFQGSKLLEFSGGSHVFPTT 208

Query: 131 SAAPPVW-----SGIVKAKTDEMLHNNHLQLDFT---NGNLFCGSSSHDDKE--GKQFPF 180
           S   P W     S  V A       +    +  +    G +F  SSS +      KQFPF
Sbjct: 209 SVLNPSWGNSLVSVAVAANGSSYGQSQSYVVGSSPAKTGIMFPISSSPNSTRSIAKQFPF 268

Query: 181 LEGAATSALPRASSVCQPL 199
           L+   +S   R +S+C+ +
Sbjct: 269 LQEEESS---RTASLCERM 284

Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'.

Arabidopsis thaliana (taxid: 3702)

>sp|B9DI20|SP13A_ARATH Squamosa promoter-binding-like protein 13A OS=Arabidopsis thaliana GN=SPL13A PE=2 SV=1

 Score =  170 bits (431), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 97/199 (48%), Positives = 123/199 (61%), Gaps = 19/199 (9%)

Query: 16  GNGT---QIPSCLVDGCTADLGKCRDYHRRHKVCEIHSKTPKVTIHGREQRFCQQCSRFH 72
           GNG    Q+P CLVDGC +D   CR+YH+RHKVC++HSKTP VTI+G +QRFCQQCSRFH
Sbjct: 90  GNGVGTNQMPICLVDGCDSDFSNCREYHKRHKVCDVHSKTPVVTINGHKQRFCQQCSRFH 149

Query: 73  SLEEFDEGKRSCRKRLDGHNRRRRKPQPDSLSLNSGRFLSNPQGTKFIPF--GSPELFST 130
           +LEEFDEGKRSCRKRLDGHNRRRRKPQP+ +      F +  QG+K + F  GS    +T
Sbjct: 150 ALEEFDEGKRSCRKRLDGHNRRRRKPQPEHIG-RPANFFTGFQGSKLLEFSGGSHVFPTT 208

Query: 131 SAAPPVW-----SGIVKAKTDEMLHNNHLQLDFT---NGNLFCGSSSHDDKE--GKQFPF 180
           S   P W     S  V A       +    +  +    G +F  SSS +      KQFPF
Sbjct: 209 SVLNPSWGNSLVSVAVAANGSSYGQSQSYVVGSSPAKTGIMFPISSSPNSTRSIAKQFPF 268

Query: 181 LEGAATSALPRASSVCQPL 199
           L+   +S   R +S+C+ +
Sbjct: 269 LQEEESS---RTASLCERM 284

Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'.

Arabidopsis thaliana (taxid: 3702)

>sp|Q0JGI1|SPL2_ORYSJ Squamosa promoter-binding-like protein 2 OS=Oryza sativa subsp. japonica GN=SPL2 PE=2 SV=2

 Score =  159 bits (401), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 82/128 (64%), Positives = 96/128 (75%), Gaps = 9/128 (7%)

Query: 10  KRARVPGNGTQ--IPSCLVDGCTADLGKC-RDYHRRHKVCEIHSKTPKVTIHGREQRFCQ 66
           KRAR  G G Q  +P+C V+GC ADL KC RDYHRRHKVCE HSKT  VT+ G++QRFCQ
Sbjct: 77  KRARA-GQGQQAAVPACSVEGCAADLSKCVRDYHRRHKVCEAHSKTAVVTVAGQQQRFCQ 135

Query: 67  QCSRFHSLEEFDEGKRSCRKRLDGHNRRRRKPQPDSLSLNSGRFLSNPQG-TKFIPFGSP 125
           QCSRFH L EFDE KRSCRKRLDGHN+RRRKPQPD   LN G   +N  G  +F  +  P
Sbjct: 136 QCSRFHLLGEFDEEKRSCRKRLDGHNKRRRKPQPD--PLNPGNLFANHHGAARFTSY--P 191

Query: 126 ELFSTSAA 133
           ++FST+A+
Sbjct: 192 QIFSTAAS 199

Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity). May be involved in panicle development.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q2R3Y1|SPL19_ORYSJ Putative squamosa promoter-binding-like protein 19 OS=Oryza sativa subsp. japonica GN=SPL19 PE=3 SV=2

 Score =  151 bits (381), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 79/162 (48%), Positives = 99/162 (61%), Gaps = 24/162 (14%)

Query: 23  SCLVDGCTADLGKCRDYHRRHKVCEIHSKTPKVTIHGREQRFCQQCSRFHSLEEFDEGKR 82
           +C VDGC +DL +CRDYHRRHKVCE H+KTP V + G+EQRFCQQCSRFH+L EFD+GK+
Sbjct: 92  ACSVDGCRSDLSRCRDYHRRHKVCEAHAKTPVVVVAGQEQRFCQQCSRFHNLAEFDDGKK 151

Query: 83  SCRKRLDGHNRRRRKPQPDSLSLNSGRFLSNPQGTKFIPFGSPELFSTSAAPPVWSGIVK 142
           SCRKRLDGHNRRRRKPQ D+L         NP+   F+P+     FS     P    I  
Sbjct: 152 SCRKRLDGHNRRRRKPQHDAL---------NPR--SFLPYHQANQFSVY---PQTFPIAD 197

Query: 143 AKTDEMLH--NNHLQLDFTNGNLFCGSSSHDDKEGKQFPFLE 182
              D ++   + H     +    F        +E KQFPF++
Sbjct: 198 QNADALMRPLDRHPPFSISFSGTF--------REPKQFPFMQ 231

Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q8S9L0|SPL10_ARATH Squamosa promoter-binding-like protein 10 OS=Arabidopsis thaliana GN=SPL10 PE=2 SV=2

 Score =  139 bits (350), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 75/164 (45%), Positives = 93/164 (56%), Gaps = 9/164 (5%)

Query: 10  KRARVPGNGTQIPSCLVDGCTADLGKCRDYHRRHKVCEIHSKTPKVTIHGREQRFCQQCS 69
           K+ +  G   Q+P C +DGC  DL   +DYHR+H+VCE HSK PKV + G E+RFCQQCS
Sbjct: 162 KKTKSCGQSMQVPRCQIDGCELDLSSSKDYHRKHRVCETHSKCPKVVVSGLERRFCQQCS 221

Query: 70  RFHSLEEFDEGKRSCRKRLDGHNRRRRKPQPDSLSLNSGRFLSNPQGTKFIPFGSPELFS 129
           RFH++ EFDE KRSCRKRL  HN RRRKPQ     LNS R     Q T  + +    L +
Sbjct: 222 RFHAVSEFDEKKRSCRKRLSHHNARRRKPQ-GVFPLNSERVFDRRQHTSML-WNGLSLNT 279

Query: 130 TSAAPPVWSGIVKAKTDEMLHNNHLQLDFTNGN-----LFCGSS 168
            S     W    + K  +M   +   L F  GN     LF GS+
Sbjct: 280 RSEEKYTWGTTYETKPTQM--ESGFTLSFQRGNGSEDQLFTGST 321

Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'.

Arabidopsis thaliana (taxid: 3702)

>sp|Q700C2|SPL16_ARATH Squamosa promoter-binding-like protein 16 OS=Arabidopsis thaliana GN=SPL16 PE=2 SV=2

 Score =  135 bits (340), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 57/83 (68%), Positives = 65/83 (78%)

Query: 22  PSCLVDGCTADLGKCRDYHRRHKVCEIHSKTPKVTIHGREQRFCQQCSRFHSLEEFDEGK 81
           P C VD C  DL   +DYHRRHKVCE+HSK  K  +  + QRFCQQCSRFH L EFDEGK
Sbjct: 80  PKCQVDNCKEDLSIAKDYHRRHKVCEVHSKATKALVGKQMQRFCQQCSRFHLLSEFDEGK 139

Query: 82  RSCRKRLDGHNRRRRKPQPDSLS 104
           RSCR+RLDGHNRRRRK QPD+++
Sbjct: 140 RSCRRRLDGHNRRRRKTQPDAIT 162

Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9S7P5|SPL12_ARATH Squamosa promoter-binding-like protein 12 OS=Arabidopsis thaliana GN=SPL12 PE=1 SV=1

 Score =  134 bits (338), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 67/127 (52%), Positives = 83/127 (65%), Gaps = 13/127 (10%)

Query: 14  VPGNGTQ-------IPS----CLVDGCTADLGKCRDYHRRHKVCEIHSKTPKVTIHGREQ 62
           + GNG +       IPS    C VD C ADL K +DYHRRHKVCEIHSK     + G  Q
Sbjct: 106 IEGNGVKKTKLGGGIPSRAICCQVDNCGADLSKVKDYHRRHKVCEIHSKATTALVGGIMQ 165

Query: 63  RFCQQCSRFHSLEEFDEGKRSCRKRLDGHNRRRRKPQPDSLSLNSGRFLSNPQGTKFIPF 122
           RFCQQCSRFH LEEFDEGKRSCR+RL GHN+RRRK  PD++   +G  +S+ Q + ++  
Sbjct: 166 RFCQQCSRFHVLEEFDEGKRSCRRRLAGHNKRRRKANPDTIG--NGTSMSDDQTSNYMLI 223

Query: 123 GSPELFS 129
              ++ S
Sbjct: 224 TLLKILS 230

Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'.

Arabidopsis thaliana (taxid: 3702)

>sp|Q75LH6|SPL6_ORYSJ Squamosa promoter-binding-like protein 6 OS=Oryza sativa subsp. japonica GN=SPL6 PE=2 SV=1

 Score =  134 bits (336), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 59/92 (64%), Positives = 69/92 (75%)

Query: 10  KRARVPGNGTQIPSCLVDGCTADLGKCRDYHRRHKVCEIHSKTPKVTIHGREQRFCQQCS 69
           K+ RV G     P+C V+GCTADL   RDYHRRHKVCE+H+K     +    QRFCQQCS
Sbjct: 138 KKIRVQGGSPSGPACQVEGCTADLTGVRDYHRRHKVCEMHAKATTAVVGNTVQRFCQQCS 197

Query: 70  RFHSLEEFDEGKRSCRKRLDGHNRRRRKPQPD 101
           RFH L+EFDEGKRSCR+RL GHNRRRRK +P+
Sbjct: 198 RFHPLQEFDEGKRSCRRRLAGHNRRRRKTRPE 229

Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'.

Oryza sativa subsp. japonica (taxid: 39947)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	312
255547668	404	conserved hypothetical protein [Ricinus	0.977	0.754	0.577	3e-94
225425368	389	PREDICTED: squamosa promoter-binding-lik	0.951	0.763	0.570	2e-86
297738478	421	unnamed protein product [Vitis vinifera]	0.887	0.657	0.532	3e-81
443429769	389	SBP-box transcription factor [Betula lum	0.967	0.776	0.512	7e-70
224136213	381	hypothetical protein POPTRDRAFT_733659 [	0.948	0.776	0.504	2e-68
219879368	379	squamosa promoter-binding protein [Citru	0.958	0.788	0.498	3e-68
225456345	377	PREDICTED: squamosa promoter-binding-lik	0.935	0.774	0.512	2e-66
449445550	328	PREDICTED: squamosa promoter-binding-lik	0.894	0.850	0.490	2e-64
302399059	415	SPL domain class transcription factor [M	0.987	0.742	0.470	9e-64
356513427	390	PREDICTED: squamosa promoter-binding-lik	0.836	0.669	0.523	3e-62

>gi|255547668|ref|XP_002514891.1| conserved hypothetical protein [Ricinus communis] gi|223545942|gb|EEF47445.1| conserved hypothetical protein [Ricinus communis]

 Score =  350 bits (899), Expect = 3e-94,   Method: Compositional matrix adjust.
 Identities = 198/343 (57%), Positives = 234/343 (68%), Gaps = 38/343 (11%)

Query: 1   MESSASGSSKRARVPGNGTQIPSCLVDGCTADLGKCRDYHRRHKVCEIHSKTPKVTIHGR 60
           MESS+SGSSKR R P NGT IPSCLVDGC +DL KCRDYHRRHKVCE+HSKTPKV I G 
Sbjct: 69  MESSSSGSSKRVRTPANGTHIPSCLVDGCASDLSKCRDYHRRHKVCELHSKTPKVFIKGL 128

Query: 61  EQRFCQQCSRFHSLEEFDEGKRSCRKRLDGHNRRRRKPQPDSLSLNSGRFLSNPQ----- 115
           EQRFCQQCSRFHSL EFDEGKRSCRKRLDGHNRRRRKPQPDS+ +NS R  SN Q     
Sbjct: 129 EQRFCQQCSRFHSLVEFDEGKRSCRKRLDGHNRRRRKPQPDSMPVNSARLFSNHQELEAK 188

Query: 116 ---------------GTKFIPFGSPELFSTSAAPPVWSGIVKAKTDEMLHNNHLQLDFTN 160
                          GT+++ FG  ++FST+ A   W+G VK + D ML+ N   L+F++
Sbjct: 189 KIRFQALLKCLCHIAGTRYLQFGGSQIFSTTGASSGWAGAVKPENDPMLYTNQSSLNFSS 248

Query: 161 G-NLFCGSSSHDDKEGKQFPFLEGAATSALPRASSVCQPLLTANSSLGNCGSSSQKVFCN 219
           G NLF GS SH  + GKQFPF     +S LP   SVCQ +L   S+LG+  S +QK+F +
Sbjct: 249 GKNLFPGSMSHSYRGGKQFPF-SHCTSSTLP-GESVCQTILDVRSTLGS-SSGNQKMFSD 305

Query: 220 RLNRVVHSSRALSLLSSPQPQTRGVGLNHTAQTDSKLIPPAQSLITSLNYSRLGMVVQPS 279
            +N+V+ S+ ALSLLSSPQ +TR +GL+H  Q D  L PPAQSLI SLN+S LGM   P 
Sbjct: 306 GVNQVIDSNGALSLLSSPQAETREIGLSHMVQPD--LNPPAQSLIPSLNFSNLGMEGGPV 363

Query: 280 ----------NASLHDPDTFEIGPARDESSTSGTHQSLSFSWE 312
                     N +LH  D F+ GP  DESS SG+HQ LSFSWE
Sbjct: 364 ESVLVSDGSHNGNLHSQDMFQTGP--DESSASGSHQRLSFSWE 404

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225425368|ref|XP_002270226.1| PREDICTED: squamosa promoter-binding-like protein 16 [Vitis vinifera] gi|147820985|emb|CAN63524.1| hypothetical protein VITISV_001644 [Vitis vinifera]

 Score =  325 bits (833), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 183/321 (57%), Positives = 223/321 (69%), Gaps = 24/321 (7%)

Query: 9   SKRARVPGNGTQIPSCLVDGCTADLGKCRDYHRRHKVCEIHSKTPKVTIHGREQRFCQQC 68
           +KRAR PG+GTQ+ SCLVDGC +DL KCRDYHRRHKVCE+HSKT KVTI G EQRFCQQC
Sbjct: 76  AKRARTPGHGTQVVSCLVDGCKSDLSKCRDYHRRHKVCELHSKTAKVTIGGHEQRFCQQC 135

Query: 69  SRFHSLEEFDEGKRSCRKRLDGHNRRRRKPQPDSLSLNSGRFLSNPQGTKFIPFGSPELF 128
           SRFHSL EFDEGKRSCRKRLDGHNRRRRKPQP+ LS+ SGRFLS+ QGT+ + F +P++F
Sbjct: 136 SRFHSLGEFDEGKRSCRKRLDGHNRRRRKPQPEPLSITSGRFLSSHQGTRLLAFSNPQVF 195

Query: 129 STSA-APPVWSGIVKAKTDEMLHNNHLQLDFTNGNLFCGSSSHDDKEGKQFPFLEGAATS 187
             SA     W+G +K + D +L+N+H QL+F +       S      GKQFPFL+G    
Sbjct: 196 PASAGVTSAWAGNIKTENDAVLYNSHQQLNFMDRQNSFPESFSRSYRGKQFPFLQG-PNP 254

Query: 188 ALPRASSVCQPLLTANSSLGNCGSSSQKVFCNRLNRVVHSSRALSLLSSPQPQTRGVGLN 247
            LP  +SVCQPLL  +S+ GN GS  QK+F + LNRV+ S RALSLLSSP P+T+ +GL+
Sbjct: 255 TLP-GTSVCQPLLDPSSASGN-GSGGQKMFSDGLNRVISSDRALSLLSSPPPETQEIGLS 312

Query: 248 HTAQTDSKLIPPAQSLITSLNYSRLGMVVQ----------------PSNASLHDPDTFEI 291
              Q +   IPPAQSLI SL+Y+ L                      SNA+LH P  F++
Sbjct: 313 RMVQQNP--IPPAQSLIPSLHYTGLSQYASSQGMGGSVGSVLVSDGSSNANLHCPAIFQL 370

Query: 292 GPARDESSTSGTHQSLSFSWE 312
           GP  D SST+  HQ+LSFSWE
Sbjct: 371 GP--DGSSTNSPHQTLSFSWE 389

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297738478|emb|CBI27679.3| unnamed protein product [Vitis vinifera]

 Score =  307 bits (787), Expect = 3e-81,   Method: Compositional matrix adjust.
 Identities = 171/321 (53%), Positives = 209/321 (65%), Gaps = 44/321 (13%)

Query: 9   SKRARVPGNGTQIPSCLVDGCTADLGKCRDYHRRHKVCEIHSKTPKVTIHGREQRFCQQC 68
           +KRAR PG+GTQ+ SCLVDGC +DL KCRDYHRRHKVCE+HSKT KVTI G EQRFCQQC
Sbjct: 76  AKRARTPGHGTQVVSCLVDGCKSDLSKCRDYHRRHKVCELHSKTAKVTIGGHEQRFCQQC 135

Query: 69  SRFHSLEEFDEGKRSCRKRLDGHNRRRRKPQPDSLSLNSGRFLSNPQGTKFIPFGSPELF 128
           SRFHSL EFDEGKRSCRKRLDGHNRRRRKPQP+ LS+ SGRFLS+ QGT+ + F +P++F
Sbjct: 136 SRFHSLGEFDEGKRSCRKRLDGHNRRRRKPQPEPLSITSGRFLSSHQGTRLLAFSNPQVF 195

Query: 129 STSA-APPVWSGIVKAKTDEMLHNNHLQLDFTNGNLFCGSSSHDDKEGKQFPFLEGAATS 187
             SA     W+G +K + D +L+N+H QL+F +       S      GKQFPFL+G    
Sbjct: 196 PASAGVTSAWAGNIKTENDAVLYNSHQQLNFMDRQNSFPESFSRSYRGKQFPFLQG-PNP 254

Query: 188 ALPRASSVCQPLLTANSSLGNCGSSSQKVFCNRLNRVVHSSRALSLLSSPQPQTRGVGLN 247
            LP  +SVCQPL                     L+ ++ S RALSLLSSP P+T+ +GL+
Sbjct: 255 TLP-GTSVCQPL---------------------LDPMISSDRALSLLSSPPPETQEIGLS 292

Query: 248 HTAQTDSKLIPPAQSLITSLNYSRLGMVVQ----------------PSNASLHDPDTFEI 291
              Q +   IPPAQSLI SL+Y+ L                      SNA+LH P  F++
Sbjct: 293 RMVQQNP--IPPAQSLIPSLHYTGLSQYASSQGMGGSVGSVLVSDGSSNANLHCPAIFQL 350

Query: 292 GPARDESSTSGTHQSLSFSWE 312
           GP  D SST+  HQ+LSFSWE
Sbjct: 351 GP--DGSSTNSPHQTLSFSWE 369

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|443429769|gb|AGC92796.1| SBP-box transcription factor [Betula luminifera]

 Score =  270 bits (690), Expect = 7e-70,   Method: Compositional matrix adjust.
 Identities = 169/330 (51%), Positives = 209/330 (63%), Gaps = 28/330 (8%)

Query: 1   MESSASGSSKRARVPGNGTQIPSCLVDGCTADLGKCRDYHRRHKVCEIHSKTPKVTIHGR 60
           + SS SGSSKRAR   NGTQ  SCLVDGCT+DL  CRDYHRRHKVCE+HSKTP+VTI G+
Sbjct: 70  IASSPSGSSKRARAANNGTQPVSCLVDGCTSDLSNCRDYHRRHKVCELHSKTPEVTICGQ 129

Query: 61  EQRFCQQCSRFHSLEEFDEGKRSCRKRLDGHNRRRRKPQPDSLSLNSGRFLSNPQGTKFI 120
           +QRFCQQCSRFHSLEEFDEGKRSCRKRLDGHNRRRRKPQP+ LS  SG FLSN QGT+ I
Sbjct: 130 KQRFCQQCSRFHSLEEFDEGKRSCRKRLDGHNRRRRKPQPEPLS-RSGNFLSNYQGTQVI 188

Query: 121 PFGSPELF-STSAAPPVWSGIVKAKTDEMLHNNHLQLDFTN-GNLFCGS--SSHDDKEGK 176
           PF S  ++ ST+     W+G++ +  D  LHN   QL   +   LF  S  S+     GK
Sbjct: 189 PFSSSLVYPSTTVVSAAWAGVLNSAADARLHNQQQQLQLIDEQKLFLRSPPSTSSFIGGK 248

Query: 177 QFPFLEGAATSALPRAS---SVCQPLLTANSSLGNCGSSSQKVFCNRL-NRVVHSSRALS 232
           Q   L+G +T+   ++S    VC+PLL    +L   G +  K++C+RL  RV  S  ALS
Sbjct: 249 QLSSLQGGSTTLGNQSSLEAPVCRPLLRT-IALAESGGARTKMYCDRLTTRVEESDCALS 307

Query: 233 LLSSPQPQTRGVGLNHTAQTDSKLIPPAQSLITSLNYSRLGMVVQP---------SNASL 283
           LLSSPQ QT  +G  H A       P A SL+  L  S  G  ++P         S++++
Sbjct: 308 LLSSPQSQTSRLGFTHIAH------PNAVSLLQPLGSSLHGNSLEPMDSVLVSSGSDSNV 361

Query: 284 HD-PDTFEIGPARDESSTSGTHQSLSFSWE 312
           H+    F +G   D S  +GT Q+L F WE
Sbjct: 362 HNCQAMFHMG--SDGSQANGTPQTLPFHWE 389

Source: Betula luminifera

Species: Betula luminifera

Genus: Betula

Family: Betulaceae

Order: Fagales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224136213|ref|XP_002322273.1| hypothetical protein POPTRDRAFT_733659 [Populus trichocarpa] gi|222869269|gb|EEF06400.1| hypothetical protein POPTRDRAFT_733659 [Populus trichocarpa]

 Score =  265 bits (677), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 160/317 (50%), Positives = 198/317 (62%), Gaps = 21/317 (6%)

Query: 6   SGSSKRARVPGNGTQIPSCLVDGCTADLGKCRDYHRRHKVCEIHSKTPKVTIHGREQRFC 65
           SGS+KRAR   +GTQ+  CLVDGC +DL  CRDYHRRHKVCE+HSKTP+VT+ G++QRFC
Sbjct: 76  SGSTKRARGANSGTQVAMCLVDGCNSDLSACRDYHRRHKVCELHSKTPQVTVGGQKQRFC 135

Query: 66  QQCSRFHSLEEFDEGKRSCRKRLDGHNRRRRKPQPDSLSLNSGRFLSNPQGTKFIPFGSP 125
           QQCSRFHSLEEFDEGKRSCRKRLDGHNRRRRKPQPD  S     FLSN QGT+  PF S 
Sbjct: 136 QQCSRFHSLEEFDEGKRSCRKRLDGHNRRRRKPQPDPHS-RPPSFLSNYQGTQLFPFSSS 194

Query: 126 ELF-STSAAPPVWSGIVKAKTDEMLHNNHLQLDFTNGNLFCGSSSHDDKEGKQFPFLE-- 182
            ++ S++   P WSG+   + D   HN H   D    NLF GSSS      KQFPFL   
Sbjct: 195 HVYPSSTVLNPTWSGVASTEADGRHHNLHQLPD--KQNLFFGSSSSSYHGVKQFPFLHWH 252

Query: 183 --GAATSALPRASSVCQPLLTANSSLGNCGSSSQKVFCNRLNRVVHSSRALSLLSSPQPQ 240
             G      P A SVCQPLL   +  G+ G+SS  +FC+RL ++  S  ALSLLSS Q  
Sbjct: 253 SPGLNNQTSPEA-SVCQPLLRTIALPGSSGASSHSMFCDRLTQIQDSDCALSLLSSTQTH 311

Query: 241 TRGVGLNHTAQTDSKLIPPAQSLITSLNYSRLG-----MVVQPSNASLHDPDTFEIGPAR 295
             G   N   Q +S  +P +  +  +++   LG     +V    +A++H P TF+  P  
Sbjct: 312 ASG---NLMVQHNS--VPLSHPIGPTVHDHGLGPIDSVLVFNNRDANVHFPGTFQ--PQS 364

Query: 296 DESSTSGTHQSLSFSWE 312
             SS +   Q+L F+WE
Sbjct: 365 GGSSGNKAPQTLPFNWE 381

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|219879368|gb|ACL51016.1| squamosa promoter-binding protein [Citrus trifoliata]

 Score =  264 bits (675), Expect = 3e-68,   Method: Compositional matrix adjust.
 Identities = 164/329 (49%), Positives = 203/329 (61%), Gaps = 30/329 (9%)

Query: 1   MES-SASGSSKRARVPGNGTQIPSCLVDGCTADLGKCRDYHRRHKVCEIHSKTPKVTIHG 59
           MES S SGS KRAR   NG+Q  SCLVDGC +DL  CRDYHRRHKVCE+HSKTP+V I G
Sbjct: 64  MESPSPSGSFKRARAANNGSQTASCLVDGCDSDLSNCRDYHRRHKVCELHSKTPQVLICG 123

Query: 60  REQRFCQQCSRFHSLEEFDEGKRSCRKRLDGHNRRRRKPQPDSLSLNSGRFLSNPQGTKF 119
           ++QRFCQQCSRFH LEEFDEGKRSCRKRLDGHNRRRRKPQPD LS  +G FLSN QG   
Sbjct: 124 QKQRFCQQCSRFHCLEEFDEGKRSCRKRLDGHNRRRRKPQPDPLS-RTGTFLSNYQGASL 182

Query: 120 IPFGSPELF-STSAAPPVWSGIVKAKTDEMLHNNHLQLDFTNG-NLFCGSSSHDDKEGKQ 177
           +PF S  ++ S +   P W+G+V  + D   +N H +L+  +  NLF  S S   K GKQ
Sbjct: 183 LPFSSSHMYPSATVVKPTWTGVVNTEADARCYNEHHRLNLPDERNLFLRSPSSSYKTGKQ 242

Query: 178 FPFLEGAATSALPRAS---SVCQPLL-TANSSLGNCGSSSQKVFCNRLNRVVHSSRALSL 233
           F FL+G  ++   + S   SV QPLL TAN  L +   +S  VF +R +    S  ALSL
Sbjct: 243 FTFLQGDNSTFNSQTSPEASVSQPLLGTAN--LSDRSGASHNVFHDR-STTQDSDCALSL 299

Query: 234 LSSPQPQTRGVGLNHTAQTDSKLIPP-AQSLITSLNYSRLGMVVQPSNASL--------- 283
           LSSP  Q+ G+ L       S+++PP +  L+  L  S     V+P  + L         
Sbjct: 300 LSSPTTQSSGISL-------SQMMPPSSMPLVRPLGTSLHNHSVEPMESVLVSSDQDDNV 352

Query: 284 HDPDTFEIGPARDESSTSGTHQSLSFSWE 312
           H P  F +G   D S+ S T Q++ F WE
Sbjct: 353 HCPGVFHLG--YDGSAASDTPQTIPFHWE 379

Source: Citrus trifoliata

Species: Citrus trifoliata

Genus: Citrus

Family: Rutaceae

Order: Sapindales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225456345|ref|XP_002280160.1| PREDICTED: squamosa promoter-binding-like protein 13 [Vitis vinifera] gi|147837620|emb|CAN77059.1| hypothetical protein VITISV_022138 [Vitis vinifera] gi|297734432|emb|CBI15679.3| unnamed protein product [Vitis vinifera]

 Score =  258 bits (660), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 163/318 (51%), Positives = 198/318 (62%), Gaps = 26/318 (8%)

Query: 6   SGSSKRARVPGNGTQIPSCLVDGCTADLGKCRDYHRRHKVCEIHSKTPKVTIHGREQRFC 65
           SGSSKRAR   NG+Q  SCLVDGC +DL  CR+YHRRHKVCE+HSKT +VTI G  QRFC
Sbjct: 75  SGSSKRARATNNGSQTVSCLVDGCNSDLSNCREYHRRHKVCELHSKTAQVTIGGHTQRFC 134

Query: 66  QQCSRFHSLEEFDEGKRSCRKRLDGHNRRRRKPQPDSLSLNSGRFLSNPQGTKFIPFGSP 125
           QQCSRFHSLEEFDEGKRSCRKRLDGHNRRRRKPQP+ LS   G FL+N QG+  +PF SP
Sbjct: 135 QQCSRFHSLEEFDEGKRSCRKRLDGHNRRRRKPQPEPLS-RPGSFLTNYQGSGLLPFSSP 193

Query: 126 ELFSTSA-APPVW-SGIVKAKTDEMLHNNHLQLDFTNG-NLFCGSSSHDDKEGKQFPFLE 182
            L+ T+A   P W +G+VK +   +L+N H QL      +L  GSSS   K GKQ  FL+
Sbjct: 194 HLYPTTAMMSPNWGAGLVKTEEGAILYNQHQQLPLLEKQHLHLGSSSSFYKGGKQLTFLQ 253

Query: 183 GAATSALPRASS---VCQPLLTANSSLGNCGSSSQKVFCNRL-NRVVHSSRALSLLSSPQ 238
               S     +S   VCQPL               K+F +RL N+V+ S  ALSLLSSPQ
Sbjct: 254 ADHPSLSNYTTSEAPVCQPL----------AGHGCKMFYDRLTNQVLESDCALSLLSSPQ 303

Query: 239 PQTRGVGLNHTAQTDSKLIPPAQSLITSLNYSRLGM-VVQPSNA---SLHDPDTFEIGPA 294
            Q+ G+ L++  Q +S  +  AQ    SL+Y+   +  V  SNA    +H P  F IG  
Sbjct: 304 TQSSGISLSNMVQPNS--VSLAQPSAPSLHYNNQPVDSVLVSNAGVTDIHCPGIFHIG-- 359

Query: 295 RDESSTSGTHQSLSFSWE 312
            D SS +   Q L F W+
Sbjct: 360 SDGSSGNEAPQKLPFFWD 377

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449445550|ref|XP_004140535.1| PREDICTED: squamosa promoter-binding-like protein 16-like [Cucumis sativus] gi|449527568|ref|XP_004170782.1| PREDICTED: squamosa promoter-binding-like protein 16-like [Cucumis sativus]

 Score =  251 bits (642), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 150/306 (49%), Positives = 195/306 (63%), Gaps = 27/306 (8%)

Query: 1   MESSASGSSKRARVPGNGTQIPSCLVDGCTADLGKCRDYHRRHKVCEIHSKTPKVTIHGR 60
           +ESS+S   KR+R PG+G Q+PSC+VDGC++DL KCRDYHRRHKVCE+HSKTPKVTI G+
Sbjct: 27  IESSSSRLMKRSRAPGSGAQVPSCMVDGCSSDLSKCRDYHRRHKVCELHSKTPKVTICGQ 86

Query: 61  EQRFCQQCSRFHSLEEFDEGKRSCRKRLDGHNRRRRKPQPDSLSLNSGRFLSNPQGTKFI 120
           EQRFCQQCSRFHSL EFD+ KRSCRKRLDGHNRRRRKPQP +++LN+GRFL   QG +F+
Sbjct: 87  EQRFCQQCSRFHSLVEFDDRKRSCRKRLDGHNRRRRKPQPATMTLNAGRFLYGNQGPRFL 146

Query: 121 PFGSPELFSTSAAPPVWSGIVKAKTDEMLHNNHLQLDFTN--GNLFCGSSSHDDKEGKQF 178
           PFG+  L ++S     W G++K + +  L   + Q DFT+   ++  GS S D KE KQ 
Sbjct: 147 PFGNQLLTASSDVSSSWIGMIKPENNVPLCGGNSQFDFTDRRKSMLPGSLSSDYKE-KQL 205

Query: 179 PFLEGAATSALPRASSVCQPLLTANSSLGNCGSSSQKVFCNRLNRVVHSSRALSLLSSP- 237
             +       LP++S   QP L   SS    G + QKV  N  NR   S  ALSLLS+P 
Sbjct: 206 A-ISCIPIGLLPKSSDT-QPFLNVGSS---NGGNVQKVLGNGSNRFFDSDCALSLLSTPV 260

Query: 238 QPQTRGVGLNHTAQTDSKLIPPAQSLITSLNYSRLGMVVQP----------SNASLHDPD 287
           +P      +N ++ + S LIPPA      ++   LG+   P          S+A++    
Sbjct: 261 EPGE----INLSSMSQSNLIPPAH----FIHSDGLGLEGDPISSGLVSDGSSDANIRCYS 312

Query: 288 TFEIGP 293
           TF+ GP
Sbjct: 313 TFQDGP 318

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|302399059|gb|ADL36824.1| SPL domain class transcription factor [Malus x domestica]

 Score =  249 bits (637), Expect = 9e-64,   Method: Compositional matrix adjust.
 Identities = 161/342 (47%), Positives = 207/342 (60%), Gaps = 34/342 (9%)

Query: 3   SSASGSSKRARVPGNGTQIPSCLVDGCTADLGKCRDYHRRHKVCEIHSKTPKVTIHGREQ 62
           SS SG  KR+R   +G+Q+ SCLVDGC +DL  CRDYHRRHKVCE+HSKTP+VTI+G +Q
Sbjct: 76  SSPSGPLKRSRAAYSGSQMVSCLVDGCNSDLSTCRDYHRRHKVCELHSKTPQVTINGNKQ 135

Query: 63  RFCQQCSRFHSLEEFDEGKRSCRKRLDGHNRRRRKPQPDSLSLNSGRFLSNPQGTKFIPF 122
           RFCQQCSRFH+ EEFDEGKRSCRKRLDGHNRRRRKPQP+ LS   G FLS+ QGT+ +PF
Sbjct: 136 RFCQQCSRFHAPEEFDEGKRSCRKRLDGHNRRRRKPQPEPLS-RPGSFLSSYQGTQLLPF 194

Query: 123 GSPELF-STSAAPPVW-SGIVKAKTDEMLHNNHLQLDFTNGNLFCGSSSHDD----KEGK 176
            S  ++ ST+   P W +GIVK + D  +HN  L L     N+F GSS        K GK
Sbjct: 195 SSSLVYPSTNVINPTWATGIVKTEPDPGVHNLQLPL-IDKQNMFLGSSVSTSSSGYKGGK 253

Query: 177 QFPFLEGAATSAL--------PRASSVCQPLLT----ANSSLGNCGSSSQKVFCNRLNRV 224
           QF   + + +S L           +SVCQPLL     + ++ G  G++  K+FC+RL   
Sbjct: 254 QFSLFQSSNSSPLHHNHQTSHHHGTSVCQPLLNTISFSETASGGGGTTKSKMFCDRLTTQ 313

Query: 225 VHSSR-ALSLLSSPQP-QTRGVGLNHTAQTDSKLIPPAQSL--------ITSLNYSRLGM 274
           +H S  ALSLLSSPQ  QT  +GL HT Q  + +    Q L         +S+      M
Sbjct: 314 IHDSDCALSLLSSPQTQQTSEIGLRHTVQQPNSISLMQQRLGPNGLRRNNSSMEPMDSVM 373

Query: 275 VVQPS-NASLHDPDTFEIGPARDESSTSGTHQS---LSFSWE 312
           V   S +A++H P  F +     + + +  HQS   L F W+
Sbjct: 374 VSNGSGDANVHCPGMFRLISDGSQGNGNQHHQSPQTLPFHWQ 415

Source: Malus x domestica

Species: Malus x domestica

Genus: Malus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356513427|ref|XP_003525415.1| PREDICTED: squamosa promoter-binding-like protein 13-like isoform 1 [Glycine max] gi|356513429|ref|XP_003525416.1| PREDICTED: squamosa promoter-binding-like protein 13-like isoform 2 [Glycine max]

 Score =  244 bits (624), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 146/279 (52%), Positives = 176/279 (63%), Gaps = 18/279 (6%)

Query: 11  RARVPGNGTQIPSCLVDGCTADLGKCRDYHRRHKVCEIHSKTPKVTIHGREQRFCQQCSR 70
           RAR   NGTQ  SCLVDGC ADL  CRDYHRRHKVCE+HSKT +V+I G++QRFCQQCSR
Sbjct: 82  RARALSNGTQTVSCLVDGCHADLSNCRDYHRRHKVCEVHSKTAQVSIGGQKQRFCQQCSR 141

Query: 71  FHSLEEFDEGKRSCRKRLDGHNRRRRKPQPDSLSLNSGRFLSNPQGTKFIPFGSPELF-S 129
           FHSLEEFDEGKRSCRKRLDGHNRRRRKPQP+SL+  SG FLSN QGT+ +PF S   + S
Sbjct: 142 FHSLEEFDEGKRSCRKRLDGHNRRRRKPQPESLT-RSGSFLSNYQGTQLLPFSSSHEYPS 200

Query: 130 TSAAPPVWSGIVKAKTDEMLH---NNHLQLDFTNG-NLFCGSSSHDDKEGKQFPFLEGAA 185
           T+   P W G++    D  LH    +H Q+   +  +LF GSS    KEGKQ  F++G  
Sbjct: 201 TTVVNPTWGGVLTTSGDVRLHGHNQHHHQVHLADKQDLFLGSSPAGYKEGKQLAFMQGDH 260

Query: 186 T-----SALPRASSVCQPLLTANSSLGNCGSSSQKVFCNRLNRVV---HSSRALSLLSSP 237
           T       LP AS     +    S          K+FC+ L   +   ++SRALSLLSSP
Sbjct: 261 TLNNRSPHLPGASVGQAQMFLRTSLYSESDGLRCKMFCDSLTSSIQDNNTSRALSLLSSP 320

Query: 238 -QPQTRGVGLNHTAQTDSKLIPPAQSLITSLNYSRLGMV 275
            QP + G GLN    + S L+ P   L  SL+ + LG V
Sbjct: 321 PQPLSPGNGLNLMVNSHSPLMQP---LGLSLHDNSLGSV 356

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	312
TAIR|locus:2159717	359	SPL13A "SQUAMOSA PROMOTER-BIND	0.676	0.587	0.474	1.6e-45
TAIR|locus:2832472	359	SPL13B "SQUAMOSA PROMOTER-BIND	0.676	0.587	0.474	1.6e-45
TAIR|locus:2059974	375	SPL9 "squamosa promoter bindin	0.346	0.288	0.607	3.9e-35
TAIR|locus:2016014	396	SPL10 "squamosa promoter bindi	0.496	0.391	0.457	6.7e-33
TAIR|locus:2026428	405	AT1G69170 [Arabidopsis thalian	0.394	0.303	0.527	6.9e-32
TAIR|locus:2101402	927	SPL12 "squamosa promoter-bindi	0.323	0.108	0.598	1.5e-30
TAIR|locus:2015999	393	SPL11 "squamosa promoter-like	0.477	0.379	0.447	1e-29
TAIR|locus:2011706	988	AT1G76580 [Arabidopsis thalian	0.285	0.090	0.662	1.1e-29
TAIR|locus:2095793	354	SPL15 "squamosa promoter bindi	0.339	0.299	0.518	1.8e-29
TAIR|locus:2169248	419	SPL2 "squamosa promoter bindin	0.310	0.231	0.591	7.1e-29

TAIR|locus:2159717 SPL13A "SQUAMOSA PROMOTER-BINDING PROTEIN LIKE 13A" [Arabidopsis thaliana (taxid:3702)]

 Score = 478 (173.3 bits), Expect = 1.6e-45, P = 1.6e-45
 Identities = 110/232 (47%), Positives = 141/232 (60%)

Query:     2 ESSASGSSKRARVPGNGT-QIPSCLVDGCTADLGKCRDYHRRHKVCEIHSKTPKVTIHGR 60
             E S S SSKR R  G GT Q+P CLVDGC +D   CR+YH+RHKVC++HSKTP VTI+G 
Sbjct:    78 EGSRSSSSKRTRGNGVGTNQMPICLVDGCDSDFSNCREYHKRHKVCDVHSKTPVVTINGH 137

Query:    61 EQRFCQQCSRFHSLEEFDEGKRSCRKRLDGHNRRRRKPQPDSLSLNSGRFLSNPQGTKFI 120
             +QRFCQQCSRFH+LEEFDEGKRSCRKRLDGHNRRRRKPQP+ +      F +  QG+K +
Sbjct:   138 KQRFCQQCSRFHALEEFDEGKRSCRKRLDGHNRRRRKPQPEHIG-RPANFFTGFQGSKLL 196

Query:   121 PF-GSPELF-STSAAPPVW-----SGIVKAKTDEMLHNNHLQLDFT---NGNLFCGSSSH 170
              F G   +F +TS   P W     S  V A       +    +  +    G +F  SSS 
Sbjct:   197 EFSGGSHVFPTTSVLNPSWGNSLVSVAVAANGSSYGQSQSYVVGSSPAKTGIMFPISSSP 256

Query:   171 DDKEG--KQFPFLEGAATSALPRASSVCQPLLT----ANSSLGNCGSSSQKV 216
             +      KQFPFL+   +S   R +S+C+ + +    ++ +L    SSS  V
Sbjct:   257 NSTRSIAKQFPFLQEEESS---RTASLCERMTSCIHDSDCALSLLSSSSSSV 305

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0048653 "anther development" evidence=IMP

TAIR|locus:2832472 SPL13B "SQUAMOSA PROMOTER-BINDING PROTEIN LIKE 13B" [Arabidopsis thaliana (taxid:3702)]

 Score = 478 (173.3 bits), Expect = 1.6e-45, P = 1.6e-45
 Identities = 110/232 (47%), Positives = 141/232 (60%)

Query:     2 ESSASGSSKRARVPGNGT-QIPSCLVDGCTADLGKCRDYHRRHKVCEIHSKTPKVTIHGR 60
             E S S SSKR R  G GT Q+P CLVDGC +D   CR+YH+RHKVC++HSKTP VTI+G 
Sbjct:    78 EGSRSSSSKRTRGNGVGTNQMPICLVDGCDSDFSNCREYHKRHKVCDVHSKTPVVTINGH 137

Query:    61 EQRFCQQCSRFHSLEEFDEGKRSCRKRLDGHNRRRRKPQPDSLSLNSGRFLSNPQGTKFI 120
             +QRFCQQCSRFH+LEEFDEGKRSCRKRLDGHNRRRRKPQP+ +      F +  QG+K +
Sbjct:   138 KQRFCQQCSRFHALEEFDEGKRSCRKRLDGHNRRRRKPQPEHIG-RPANFFTGFQGSKLL 196

Query:   121 PF-GSPELF-STSAAPPVW-----SGIVKAKTDEMLHNNHLQLDFT---NGNLFCGSSSH 170
              F G   +F +TS   P W     S  V A       +    +  +    G +F  SSS 
Sbjct:   197 EFSGGSHVFPTTSVLNPSWGNSLVSVAVAANGSSYGQSQSYVVGSSPAKTGIMFPISSSP 256

Query:   171 DDKEG--KQFPFLEGAATSALPRASSVCQPLLT----ANSSLGNCGSSSQKV 216
             +      KQFPFL+   +S   R +S+C+ + +    ++ +L    SSS  V
Sbjct:   257 NSTRSIAKQFPFLQEEESS---RTASLCERMTSCIHDSDCALSLLSSSSSSV 305

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IEA;ISS

GO:0048653 "anther development" evidence=IMP

TAIR|locus:2059974 SPL9 "squamosa promoter binding protein-like 9" [Arabidopsis thaliana (taxid:3702)]

 Score = 355 (130.0 bits), Expect = 3.9e-35, Sum P(2) = 3.9e-35
 Identities = 68/112 (60%), Positives = 80/112 (71%)

Query:     3 SSASGSSKRARVPGNGT----QIPSCLVDGCTADLGKCRDYHRRHKVCEIHSKTPKVTIH 58
             SS+SG     RV G G+    QIP C V+GC  DL   + Y+ RH+VC +HSKTPKVT+ 
Sbjct:    49 SSSSGGRSNRRVRGGGSGQSGQIPRCQVEGCGMDLTNAKGYYSRHRVCGVHSKTPKVTVA 108

Query:    59 GREQRFCQQCSRFHSLEEFDEGKRSCRKRLDGHNRRRRKPQPDSLSLNSGRF 110
             G EQRFCQQCSRFH L EFD  KRSCR+RL GHN RRRKPQP SLS+ + R+
Sbjct:   109 GIEQRFCQQCSRFHQLPEFDLEKRSCRRRLAGHNERRRKPQPASLSVLASRY 160

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM;IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0010228 "vegetative to reproductive phase transition of meristem" evidence=IGI

GO:0048366 "leaf development" evidence=IMP;IDA

GO:2000025 "regulation of leaf formation" evidence=IMP

GO:0048653 "anther development" evidence=IGI

TAIR|locus:2016014 SPL10 "squamosa promoter binding protein-like 10" [Arabidopsis thaliana (taxid:3702)]

 Score = 359 (131.4 bits), Expect = 6.7e-33, P = 6.7e-33
 Identities = 75/164 (45%), Positives = 93/164 (56%)

Query:    10 KRARVPGNGTQIPSCLVDGCTADLGKCRDYHRRHKVCEIHSKTPKVTIHGREQRFCQQCS 69
             K+ +  G   Q+P C +DGC  DL   +DYHR+H+VCE HSK PKV + G E+RFCQQCS
Sbjct:   162 KKTKSCGQSMQVPRCQIDGCELDLSSSKDYHRKHRVCETHSKCPKVVVSGLERRFCQQCS 221

Query:    70 RFHSLEEFDEGKRSCRKRLDGHNRRRRKPQPDSLSLNSGRFLSNPQGTKFIPFGSPELFS 129
             RFH++ EFDE KRSCRKRL  HN RRRKPQ     LNS R     Q T  + +    L +
Sbjct:   222 RFHAVSEFDEKKRSCRKRLSHHNARRRKPQ-GVFPLNSERVFDRRQHTSML-WNGLSLNT 279

Query:   130 TSAAPPVWSGIVKAKTDEMLHNNHLQLDFTNGN-----LFCGSS 168
              S     W    + K  +M   +   L F  GN     LF GS+
Sbjct:   280 RSEEKYTWGTTYETKPTQM--ESGFTLSFQRGNGSEDQLFTGST 321

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0010358 "leaf shaping" evidence=IMP

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IDA

GO:0048510 "regulation of timing of transition from vegetative to reproductive phase" evidence=IMP

TAIR|locus:2026428 AT1G69170 [Arabidopsis thaliana (taxid:3702)]

 Score = 325 (119.5 bits), Expect = 6.9e-32, Sum P(2) = 6.9e-32
 Identities = 68/129 (52%), Positives = 81/129 (62%)

Query:     9 SKRARVPGNGTQIPSCLVDGCTADLGKCRDYHRRHKVCEIHSKTPKVTIHGREQRFCQQC 68
             SK++R     +Q P C V GC+ DL   +DYH+RH+VCE HSKT  V ++G EQRFCQQC
Sbjct:   109 SKKSRASNLCSQNPLCQVYGCSKDLSSSKDYHKRHRVCEAHSKTSVVIVNGLEQRFCQQC 168

Query:    69 SRFHSLEEFDEGKRSCRKRLDGHNRRRRKPQPDSLSLNSGRFLSNPQ---GTKFIPFGS- 124
             SRFH L EFD+GKRSCR+RL GHN RRRKP    L     + L   Q   G KF+   S 
Sbjct:   169 SRFHFLSEFDDGKRSCRRRLAGHNERRRKPAFYFLPGKRHKLLRTSQDVVGNKFLENSSL 228

Query:   125 --PELFSTS 131
               PE F  S
Sbjct:   229 VLPESFPGS 237

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

TAIR|locus:2101402 SPL12 "squamosa promoter-binding protein-like 12" [Arabidopsis thaliana (taxid:3702)]

 Score = 331 (121.6 bits), Expect = 1.5e-30, Sum P(2) = 1.5e-30
 Identities = 64/107 (59%), Positives = 76/107 (71%)

Query:    18 GTQIPS----CLVDGCTADLGKCRDYHRRHKVCEIHSKTPKVTIHGREQRFCQQCSRFHS 73
             G  IPS    C VD C ADL K +DYHRRHKVCEIHSK     + G  QRFCQQCSRFH 
Sbjct:   117 GGGIPSRAICCQVDNCGADLSKVKDYHRRHKVCEIHSKATTALVGGIMQRFCQQCSRFHV 176

Query:    74 LEEFDEGKRSCRKRLDGHNRRRRKPQPDSLSLNSGRFLSNPQGTKFI 120
             LEEFDEGKRSCR+RL GHN+RRRK  PD++   +G  +S+ Q + ++
Sbjct:   177 LEEFDEGKRSCRRRLAGHNKRRRKANPDTIG--NGTSMSDDQTSNYM 221

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM;IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0010413 "glucuronoxylan metabolic process" evidence=RCA

GO:0045492 "xylan biosynthetic process" evidence=RCA

TAIR|locus:2015999 SPL11 "squamosa promoter-like 11" [Arabidopsis thaliana (taxid:3702)]

 Score = 329 (120.9 bits), Expect = 1.0e-29, P = 1.0e-29
 Identities = 68/152 (44%), Positives = 85/152 (55%)

Query:    11 RARVPGNGTQIPSCLVDGCTADLGKCRDYHRRHKVCEIHSKTPKVTIHGREQRFCQQCSR 70
             ++++ G    +P C +DGC  DL   + YHR+HKVCE HSK PKV++ G E+RFCQQCSR
Sbjct:   162 KSKLCGQSMPVPRCQIDGCELDLSSAKGYHRKHKVCEKHSKCPKVSVSGLERRFCQQCSR 221

Query:    71 FHSLEEFDEGKRSCRKRLDGHNRRRRKPQPDSLSLNSGRFLSNPQGTKFIPFGSPELFST 130
             FH++ EFDE KRSCRKRL  HN RRRKPQ    S+N  R     Q T  + +    L + 
Sbjct:   222 FHAVSEFDEKKRSCRKRLSHHNARRRKPQ-GVFSMNPERVYDRRQHTNML-WNGVSLNAR 279

Query:   131 SAAPPVWSGIVKAKTDEMLHNNHLQLDFTNGN 162
             S     W G     T          L F  GN
Sbjct:   280 SEEMYEW-GNNTYDTKPRQTEKSFTLSFQRGN 310

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0048510 "regulation of timing of transition from vegetative to reproductive phase" evidence=IMP

TAIR|locus:2011706 AT1G76580 [Arabidopsis thaliana (taxid:3702)]

 Score = 340 (124.7 bits), Expect = 1.1e-29, P = 1.1e-29
 Identities = 59/89 (66%), Positives = 67/89 (75%)

Query:    16 GNGTQIPSCLVDGCTADLGKCRDYHRRHKVCEIHSKTPKVTIHGREQRFCQQCSRFHSLE 75
             G G   P C VD C  DL   +DYHRRHKVCE+HSK  K  +  + QRFCQQCSRFH L 
Sbjct:    74 GGGGNYPKCQVDNCKEDLSIAKDYHRRHKVCEVHSKATKALVGKQMQRFCQQCSRFHLLS 133

Query:    76 EFDEGKRSCRKRLDGHNRRRRKPQPDSLS 104
             EFDEGKRSCR+RLDGHNRRRRK QPD+++
Sbjct:   134 EFDEGKRSCRRRLDGHNRRRRKTQPDAIT 162

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM;IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0005886 "plasma membrane" evidence=IDA

TAIR|locus:2095793 SPL15 "squamosa promoter binding protein-like 15" [Arabidopsis thaliana (taxid:3702)]

 Score = 286 (105.7 bits), Expect = 1.8e-29, Sum P(2) = 1.8e-29
 Identities = 55/106 (51%), Positives = 64/106 (60%)

Query:     2 ESSASGSSKRARVPGNGTQIPSCLVDGCTADLGKCRDYHRRHKVCEIHSKTPKVTIHGRE 61
             + S S S  R       +    C V+GC  DL   + Y+ RHKVC IHSK+ KV + G  
Sbjct:    37 DGSGSRSKNRVNTVRKSSTTARCQVEGCRMDLSNVKAYYSRHKVCCIHSKSSKVIVSGLH 96

Query:    62 QRFCQQCSRFHSLEEFDEGKRSCRKRLDGHNRRRRKPQPDSLSLNS 107
             QRFCQQCSRFH L EFD  KRSCR+RL  HN RRRKPQP +    S
Sbjct:    97 QRFCQQCSRFHQLSEFDLEKRSCRRRLACHNERRRKPQPTTALFTS 142

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0010228 "vegetative to reproductive phase transition of meristem" evidence=IGI

GO:0008361 "regulation of cell size" evidence=IMP

GO:0042127 "regulation of cell proliferation" evidence=IMP

GO:0048653 "anther development" evidence=IGI

GO:0009827 "plant-type cell wall modification" evidence=RCA

GO:0009860 "pollen tube growth" evidence=RCA

TAIR|locus:2169248 SPL2 "squamosa promoter binding protein-like 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 321 (118.1 bits), Expect = 7.1e-29, P = 7.1e-29
 Identities = 58/98 (59%), Positives = 67/98 (68%)

Query:     3 SSASGSSKRARVPGNGTQIPSCLVDGCTADLGKCRDYHRRHKVCEIHSKTPKVTIHGREQ 62
             SS S   K   +P    Q P C V+GC  DL   +DYHR+H++CE HSK PKV + G E+
Sbjct:   149 SSVSPVKKSKSIPQR-LQTPHCQVEGCNLDLSSAKDYHRKHRICENHSKFPKVVVSGVER 207

Query:    63 RFCQQCSRFHSLEEFDEGKRSCRKRLDGHNRRRRKPQP 100
             RFCQQCSRFH L EFDE KRSCR+RL  HN RRRKP P
Sbjct:   208 RFCQQCSRFHCLSEFDEKKRSCRRRLSDHNARRRKPNP 245

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=RCA;TAS

GO:0048510 "regulation of timing of transition from vegetative to reproductive phase" evidence=IMP

GO:0048653 "anther development" evidence=IGI

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00002776001 SubName- Full=Chromosome chr1 scaffold_136, whole genome shotgun sequence; (348 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	312
pfam03110	79	pfam03110, SBP, SBP domain	1e-50

>gnl|CDD|190527 pfam03110, SBP, SBP domain

 Score =  161 bits (410), Expect = 1e-50
 Identities = 59/78 (75%), Positives = 64/78 (82%)

Query: 24  CLVDGCTADLGKCRDYHRRHKVCEIHSKTPKVTIHGREQRFCQQCSRFHSLEEFDEGKRS 83
           C V+GC ADL   +DYHRRHKVCE+HSK P V + G EQRFCQQCSRFH L EFDEGKRS
Sbjct: 2   CQVEGCGADLSNAKDYHRRHKVCEVHSKAPVVLVSGLEQRFCQQCSRFHLLSEFDEGKRS 61

Query: 84  CRKRLDGHNRRRRKPQPD 101
           CR+RL GHN RRRKPQPD
Sbjct: 62  CRRRLAGHNERRRKPQPD 79

SBP domains (for SQUAMOSA-pROMOTER BINDING PROTEIN) are found in plant proteins. It is a sequence specific DNA-binding domain. Members of family probably function as transcription factors involved in the control of early flower development. The domain contains 10 conserved cysteine and histidine residues that probably are zinc ligands. Length = 79

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	312
PF03110	79	SBP: SBP domain; InterPro: IPR004333 The SBP plant	100.0

>PF03110 SBP: SBP domain; InterPro: IPR004333 The SBP plant protein domain is a sequence specific DNA-binding domain []

Probab=100.00  E-value=1.6e-40  Score=262.13  Aligned_cols=78  Identities=63%  Similarity=1.158  Sum_probs=63.2

Q ss_pred             ceecCCCcccccccccccccccchhhhcCCCeEEECCeeeehhhhcccccccccccCcchhHHHHHhHHHhhhcCCCC
Q 021420           23 SCLVDGCTADLGKCRDYHRRHKVCEIHSKTPKVTIHGREQRFCQQCSRFHSLEEFDEGKRSCRKRLDGHNRRRRKPQP  100 (312)
Q Consensus        23 ~CqV~GC~~dLs~~k~Y~rR~rvCe~H~ka~~V~v~G~~~RFCQQC~rFH~L~eFDg~kRSCR~rL~~hn~RRRk~q~  100 (312)
                      +||||||++||+.+|+||+||||||.|+|||+|+++|+++||||||+|||+|+||||+|||||++|++||+||||+++
T Consensus         1 ~CqV~gC~~dL~~~k~Y~rR~rICe~H~ka~~V~~~G~~~RFCQQC~rfh~l~eFdg~kRSCr~~L~~h~~RRr~~~~   78 (79)
T PF03110_consen    1 RCQVDGCGADLSGAKEYHRRYRICEEHAKAPVVVVDGVEQRFCQQCGRFHPLSEFDGGKRSCRARLARHNERRRKRQQ   78 (79)
T ss_dssp             C-SSTTEE-EETS--SSCCCTT--HHHHTHSEEEETTEEEEE-TTTSSEEETTCB-SSTTSBSTTTT-SSS---S-S-
T ss_pred             CCcCCCCCcchhhhHHHhhccCcchhhcCCCeEEECChhHHHHHHHHcCCCHHHHcchhhhHHHHHHHHHHHhccccC
Confidence            599999999999999999999999999999999999999999999999999999999999999999999999999876

Proteins with this domain probably function as transcription factors involved in the control of early flower development. The domain contains 10 conserved cysteine and histidine residues that probably are zinc ligands.; GO: 0003677 DNA binding, 0005634 nucleus; PDB: 1UL4_A 1WJ0_A 1UL5_A.

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	312
1ul4_A	94	Solution Structure Of The Dna-Binding Domain Of Squ		9e-25
1wj0_A	60	Solution Structure Of The Dna-Binding Domain Of Squ		7e-18
1ul5_A	88	Solution Structure Of The Dna-binding Domain Of Squ		6e-16

>pdb|1UL4|A Chain A, Solution Structure Of The Dna-Binding Domain Of Squamosa Promoter Binding Protein-Like 4 Length = 94

Iteration: 1
 Score =  110 bits (276), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 50/74 (67%), Positives = 58/74 (78%)
Query: 24 CLVDGCTADLGKCRDYHRRHKVCEIHSKTPKVTIHGREQRFCQQCSRFHSLEEFDEGKRS 83
          C VD CTAD+ + + YHRRHKVCE+H+K   V + G  QRFCQQCSRFH L+EFDE KRS
Sbjct: 11 CQVDRCTADMKEAKLYHRRHKVCEVHAKASSVFLSGLNQRFCQQCSRFHDLQEFDEAKRS 70
Query: 84 CRKRLDGHNRRRRK 97
          CR+RL GHN RRRK
Sbjct: 71 CRRRLAGHNERRRK 84

>pdb|1WJ0|A Chain A, Solution Structure Of The Dna-Binding Domain Of Squamosa Promoter Binding Protein-Like 12 Lacking The Second Zinc- Binding Site Length = 60

Iteration: 1
 Score = 87.8 bits (216), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 39/55 (70%), Positives = 41/55 (74%)
Query: 24 CLVDGCTADLGKCRDYHRRHKVCEIHSKTPKVTIHGREQRFCQQCSRFHSLEEFD 78
          C VD C ADL K +DYHRRHKVCEIHSK     + G  QRFCQQCSRFH LEEFD
Sbjct: 6  CQVDNCGADLSKVKDYHRRHKVCEIHSKATTALVGGIMQRFCQQCSRFHVLEEFD 60

>pdb|1UL5|A Chain A, Solution Structure Of The Dna-binding Domain Of Squamosa Promoter Binding Protein-like 7 Length = 88

Iteration: 1
 Score = 81.3 bits (199), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 38/79 (48%), Positives = 54/79 (68%), Gaps = 1/79 (1%)
Query: 21 IPSCLVDGCTADLGKCRDYHRRHKVCEIHSKTPKVTIHGREQRFCQQCSRFHSLEEFDEG 80
          +  C V  C AD+ + + YH+RH+VC   +    V + G  +R+CQQC +FH L +FDEG
Sbjct: 3  VARCQVPDCEADISELKGYHKRHRVCLRCATASFVVLDGENKRYCQQCGKFHLLPDFDEG 62
Query: 81 KRSCRKRLDGH-NRRRRKP 98
          KRSCR++L+ H NRR+RKP
Sbjct: 63 KRSCRRKLERHNNRRKRKP 81
  Database: pdbaa

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	312
1ul4_A	94	SPL4, squamosa promoter binding protein-like 4; tr	5e-37
1ul5_A	88	SPL7, squamosa promoter binding protein-like 7; tr	2e-36
1wj0_A	60	Squamosa promoter-binding protein-like 12; DNA-bin	1e-30
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-05

>1ul4_A SPL4, squamosa promoter binding protein-like 4; transcription factor, SBP, flower development, DNA binding protein, structural genomics; NMR {Arabidopsis thaliana} SCOP: g.72.1.1 Length = 94

 Score =  126 bits (318), Expect = 5e-37
 Identities = 51/87 (58%), Positives = 62/87 (71%)

Query: 16  GNGTQIPSCLVDGCTADLGKCRDYHRRHKVCEIHSKTPKVTIHGREQRFCQQCSRFHSLE 75
              + +  C VD CTAD+ + + YHRRHKVCE+H+K   V + G  QRFCQQCSRFH L+
Sbjct: 3   SGSSGLRLCQVDRCTADMKEAKLYHRRHKVCEVHAKASSVFLSGLNQRFCQQCSRFHDLQ 62

Query: 76  EFDEGKRSCRKRLDGHNRRRRKPQPDS 102
           EFDE KRSCR+RL GHN RRRK   +S
Sbjct: 63  EFDEAKRSCRRRLAGHNERRRKSSGES 89

>1ul5_A SPL7, squamosa promoter binding protein-like 7; transcription factor, SBP, flower development, DNA binding protein, structural genomics; NMR {Arabidopsis thaliana} SCOP: g.72.1.1 Length = 88

 Score =  125 bits (314), Expect = 2e-36
 Identities = 36/83 (43%), Positives = 53/83 (63%)

Query: 20  QIPSCLVDGCTADLGKCRDYHRRHKVCEIHSKTPKVTIHGREQRFCQQCSRFHSLEEFDE 79
            +  C V  C AD+ + + YH+RH+VC   +    V + G  +R+CQQC +FH L +FDE
Sbjct: 2   SVARCQVPDCEADISELKGYHKRHRVCLRCATASFVVLDGENKRYCQQCGKFHLLPDFDE 61

Query: 80  GKRSCRKRLDGHNRRRRKPQPDS 102
           GKRSCR++L+ HN RR++   D 
Sbjct: 62  GKRSCRRKLERHNNRRKRKPVDK 84

>1wj0_A Squamosa promoter-binding protein-like 12; DNA-binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.72.1.1 Length = 60

 Score =  109 bits (273), Expect = 1e-30
 Identities = 39/57 (68%), Positives = 41/57 (71%)

Query: 22 PSCLVDGCTADLGKCRDYHRRHKVCEIHSKTPKVTIHGREQRFCQQCSRFHSLEEFD 78
            C VD C ADL K +DYHRRHKVCEIHSK     + G  QRFCQQCSRFH LEEFD
Sbjct: 4  ICCQVDNCGADLSKVKDYHRRHKVCEIHSKATTALVGGIMQRFCQQCSRFHVLEEFD 60

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 45.2 bits (106), Expect = 2e-05
 Identities = 61/335 (18%), Positives = 96/335 (28%), Gaps = 100/335 (29%)

Query: 28  GCTADLGK-------CRDYHRRHKV-CEIH------SKTPKVTIHGREQRFCQQ-----C 68
           G     GK       C  Y  + K+  +I         +P+  +    Q+   Q      
Sbjct: 160 GS----GKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLE-MLQKLLYQIDPNWT 214

Query: 69  SRFHSLEEFDEGKRSCRKRLDGHNRR--RRKPQPDSLSLNSGRFLSNPQGTKFI-PF--G 123
           SR            S +  L    RR  + KP  + L L     L N Q  K    F   
Sbjct: 215 SRSDHSSNIKLRIHSIQAEL----RRLLKSKPYENCL-L----VLLNVQNAKAWNAFNLS 265

Query: 124 SPELFSTSAAPPVWSGIVKAKTDEM--LHNNHLQLDFTNGNLFCGSSSHDDKEGKQFPFL 181
              L +T           K  TD +      H+ LD  +  L          E K    L
Sbjct: 266 CKILLTTRF---------KQVTDFLSAATTTHISLDHHSMTL-------TPDEVKSL-LL 308

Query: 182 E--GAATSALPRASSVCQPLLTANSSLGNCGSS----------SQKVFCNRLNRVVHSSR 229
           +        LPR      P       L     S           + V C++L  ++ SS 
Sbjct: 309 KYLDCRPQDLPREVLTTNPRR-----LSIIAESIRDGLATWDNWKHVNCDKLTTIIESS- 362

Query: 230 ALSLLSSPQPQTRGVGLNHTA--QTDSKLIPPA--------------QSLITSL-NYSRL 272
            L++L   + +     L   +     +  IP                  ++  L  YS +
Sbjct: 363 -LNVLEPAEYRKMFDRL---SVFPPSAH-IPTILLSLIWFDVIKSDVMVVVNKLHKYSLV 417

Query: 273 GMVVQPSNASLHDPDTFEIGPARDESSTSGTHQSL 307
               + S  S+      E+    +       H+S+
Sbjct: 418 EKQPKESTISIPSIY-LELKVKLENEYA--LHRSI 449

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	312
1ul4_A	94	SPL4, squamosa promoter binding protein-like 4; tr	100.0
1ul5_A	88	SPL7, squamosa promoter binding protein-like 7; tr	100.0
1wj0_A	60	Squamosa promoter-binding protein-like 12; DNA-bin	99.97

>1ul4_A SPL4, squamosa promoter binding protein-like 4; transcription factor, SBP, flower development, DNA binding protein, structural genomics; NMR {Arabidopsis thaliana} SCOP: g.72.1.1

Probab=100.00  E-value=2.9e-44  Score=290.16  Aligned_cols=89  Identities=57%  Similarity=1.032  Sum_probs=80.6

Q ss_pred             CCCCCCCceecCCCcccccccccccccccchhhhcCCCeEEECCeeeehhhhcccccccccccCcchhHHHHHhHHHhhh
Q 021420           16 GNGTQIPSCLVDGCTADLGKCRDYHRRHKVCEIHSKTPKVTIHGREQRFCQQCSRFHSLEEFDEGKRSCRKRLDGHNRRR   95 (312)
Q Consensus        16 ~~g~~~~~CqV~GC~~dLs~~k~Y~rR~rvCe~H~ka~~V~v~G~~~RFCQQC~rFH~L~eFDg~kRSCR~rL~~hn~RR   95 (312)
                      ++|++.++||||||++||+.+|+||+||||||+|+|||+|+|+|+++||||||+|||+|+|||+.|||||+||++||+||
T Consensus         3 ~~~~~~~~CqV~GC~~dL~~~k~Y~rR~rvCe~H~ka~~V~~~G~~~RFCQQCsrFH~L~eFD~~kRSCR~rL~~hn~RR   82 (94)
T 1ul4_A            3 SGSSGLRLCQVDRCTADMKEAKLYHRRHKVCEVHAKASSVFLSGLNQRFCQQCSRFHDLQEFDEAKRSCRRRLAGHNERR   82 (94)
T ss_dssp             -----CCCCSSTTCCCCCTTCCHHHHHTTCCHHHHTCSCEEETTEEEEECTTTSSEEETTTCCSSCCSCSTTTTCCCCCC
T ss_pred             CCCCCCCceecCCCCcchhhHHHHHHhhhhhHHHhcCCEEEECChhHHHHHHHhccCCHHHhccccchHHHHHHHHHHHh
Confidence            45678899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCCCcc
Q 021420           96 RKPQPDSLS  104 (312)
Q Consensus        96 Rk~q~~~~~  104 (312)
                      ||+++|+.+
T Consensus        83 Rk~~~~~~~   91 (94)
T 1ul4_A           83 RKSSGESGP   91 (94)
T ss_dssp             CSCCCC---
T ss_pred             ccCCCCcCC
Confidence            999999875

>1ul5_A SPL7, squamosa promoter binding protein-like 7; transcription factor, SBP, flower development, DNA binding protein, structural genomics; NMR {Arabidopsis thaliana} SCOP: g.72.1.1

Probab=100.00  E-value=2.6e-42  Score=275.97  Aligned_cols=83  Identities=43%  Similarity=0.938  Sum_probs=79.2

Q ss_pred             CCceecCCCcccccccccccccccchhhhcCCCeEEECCeeeehhhhcccccccccccCcchhHHHHHhHHHhhhcCCCC
Q 021420           21 IPSCLVDGCTADLGKCRDYHRRHKVCEIHSKTPKVTIHGREQRFCQQCSRFHSLEEFDEGKRSCRKRLDGHNRRRRKPQP  100 (312)
Q Consensus        21 ~~~CqV~GC~~dLs~~k~Y~rR~rvCe~H~ka~~V~v~G~~~RFCQQC~rFH~L~eFDg~kRSCR~rL~~hn~RRRk~q~  100 (312)
                      .++||||||++||+.+|+||+||||||+|+|||+|+|+|+++||||||+|||+|+|||++|||||++|++||+||||+++
T Consensus         3 ~~~CqV~GC~~dLs~~k~Y~rR~rvCe~H~ka~~v~~~G~~~RFCQQC~rFH~L~eFD~~kRSCR~rL~~hn~RRR~~~~   82 (88)
T 1ul5_A            3 VARCQVPDCEADISELKGYHKRHRVCLRCATASFVVLDGENKRYCQQCGKFHLLPDFDEGKRSCRRKLERHNNRRKRKPV   82 (88)
T ss_dssp             CCSCEETTEECCCSSCCSSSGGGTCCHHHHHHSEEEETTEEEEECTTTSSEEEGGGBCSSTTSBSSSCCCSSSCCCCCSC
T ss_pred             CCeeecCCCCCChhHhhHHHhhccccHHHcCCCEEEECCEeeHHHHHhccccChhhhccccchHHHHHHHHHHHhccCCc
Confidence            57899999999999999999999999999999999999999999999999999999999999999999999999888776


Q ss_pred             CCc
Q 021420          101 DSL  103 (312)
Q Consensus       101 ~~~  103 (312)
                      ++.
T Consensus        83 ~~~   85 (88)
T 1ul5_A           83 DKG   85 (88)
T ss_dssp             SSC
T ss_pred             cCC
Confidence            653

>1wj0_A Squamosa promoter-binding protein-like 12; DNA-binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.72.1.1

Probab=99.97  E-value=1.7e-32  Score=205.79  Aligned_cols=59  Identities=66%  Similarity=1.141  Sum_probs=57.1

Q ss_pred             CCCceecCCCcccccccccccccccchhhhcCCCeEEECCeeeehhhhccccccccccc
Q 021420           20 QIPSCLVDGCTADLGKCRDYHRRHKVCEIHSKTPKVTIHGREQRFCQQCSRFHSLEEFD   78 (312)
Q Consensus        20 ~~~~CqV~GC~~dLs~~k~Y~rR~rvCe~H~ka~~V~v~G~~~RFCQQC~rFH~L~eFD   78 (312)
                      +.++||||||++||+.+|+||+||||||+|+||++|+++|+++||||||+|||+|+|||
T Consensus         2 ~~~~CqV~gC~~dl~~~k~Y~rR~rvCe~H~ka~~v~~~G~~~RFCQQCsrFH~L~eFD   60 (60)
T 1wj0_A            2 SAICCQVDNCGADLSKVKDYHRRHKVCEIHSKATTALVGGIMQRFCQQCSRFHVLEEFD   60 (60)
T ss_dssp             -CEECSSTTCCCEETSCCSSTTTTTCCHHHHTCSCEEETTEEECCCSSSCSCCBTTSCC
T ss_pred             CCceeecCCCCcChhHhHHHhhccccChhHcCCCEEEECCEEEehhhhccCccCcccCC
Confidence            46799999999999999999999999999999999999999999999999999999998

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	312
d1ul5a_	86	g.72.1.1 (A:) Squamosa promoter binding protein-li	5e-45
d1ul4a_	81	g.72.1.1 (A:) Squamosa promoter binding protein-li	3e-43
d1wj0a_	58	g.72.1.1 (A:) Squamosa-promoter binding-like prote	7e-30

>d1ul5a_ g.72.1.1 (A:) Squamosa promoter binding protein-like 7, DNA-binding domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 86

class: Small proteins
fold: SBT domain
superfamily: SBT domain
family: SBT domain
domain: Squamosa promoter binding protein-like 7, DNA-binding domain
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score =  146 bits (369), Expect = 5e-45
 Identities = 36/82 (43%), Positives = 53/82 (64%)

Query: 21  IPSCLVDGCTADLGKCRDYHRRHKVCEIHSKTPKVTIHGREQRFCQQCSRFHSLEEFDEG 80
           +  C V  C AD+ + + YH+RH+VC   +    V + G  +R+CQQC +FH L +FDEG
Sbjct: 1   VARCQVPDCEADISELKGYHKRHRVCLRCATASFVVLDGENKRYCQQCGKFHLLPDFDEG 60

Query: 81  KRSCRKRLDGHNRRRRKPQPDS 102
           KRSCR++L+ HN RR++   D 
Sbjct: 61  KRSCRRKLERHNNRRKRKPVDK 82

>d1ul4a_ g.72.1.1 (A:) Squamosa promoter binding protein-like 4, DNA-binding domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 81

class: Small proteins
fold: SBT domain
superfamily: SBT domain
family: SBT domain
domain: Squamosa promoter binding protein-like 4, DNA-binding domain
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score =  141 bits (356), Expect = 3e-43
 Identities = 50/81 (61%), Positives = 60/81 (74%)

Query: 21  IPSCLVDGCTADLGKCRDYHRRHKVCEIHSKTPKVTIHGREQRFCQQCSRFHSLEEFDEG 80
           +  C VD CTAD+ + + YHRRHKVCE+H+K   V + G  QRFCQQCSRFH L+EFDE 
Sbjct: 1   LRLCQVDRCTADMKEAKLYHRRHKVCEVHAKASSVFLSGLNQRFCQQCSRFHDLQEFDEA 60

Query: 81  KRSCRKRLDGHNRRRRKPQPD 101
           KRSCR+RL GHN RRRK   +
Sbjct: 61  KRSCRRRLAGHNERRRKSSGE 81

>d1wj0a_ g.72.1.1 (A:) Squamosa-promoter binding-like protein 12, DNA-binding domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 58

class: Small proteins
fold: SBT domain
superfamily: SBT domain
family: SBT domain
domain: Squamosa-promoter binding-like protein 12, DNA-binding domain
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score =  106 bits (265), Expect = 7e-30
 Identities = 39/56 (69%), Positives = 41/56 (73%)

Query: 23 SCLVDGCTADLGKCRDYHRRHKVCEIHSKTPKVTIHGREQRFCQQCSRFHSLEEFD 78
           C VD C ADL K +DYHRRHKVCEIHSK     + G  QRFCQQCSRFH LEEFD
Sbjct: 3  CCQVDNCGADLSKVKDYHRRHKVCEIHSKATTALVGGIMQRFCQQCSRFHVLEEFD 58

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	312
d1ul4a_	81	Squamosa promoter binding protein-like 4, DNA-bind	100.0
d1ul5a_	86	Squamosa promoter binding protein-like 7, DNA-bind	100.0
d1wj0a_	58	Squamosa-promoter binding-like protein 12, DNA-bin	99.97

>d1ul4a_ g.72.1.1 (A:) Squamosa promoter binding protein-like 4, DNA-binding domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: SBT domain
superfamily: SBT domain
family: SBT domain
domain: Squamosa promoter binding protein-like 4, DNA-binding domain
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=100.00  E-value=1.1e-42  Score=272.47  Aligned_cols=80  Identities=63%  Similarity=1.137  Sum_probs=78.5

Q ss_pred             CceecCCCcccccccccccccccchhhhcCCCeEEECCeeeehhhhcccccccccccCcchhHHHHHhHHHhhhcCCCCC
Q 021420           22 PSCLVDGCTADLGKCRDYHRRHKVCEIHSKTPKVTIHGREQRFCQQCSRFHSLEEFDEGKRSCRKRLDGHNRRRRKPQPD  101 (312)
Q Consensus        22 ~~CqV~GC~~dLs~~k~Y~rR~rvCe~H~ka~~V~v~G~~~RFCQQC~rFH~L~eFDg~kRSCR~rL~~hn~RRRk~q~~  101 (312)
                      ..||||||++||+.+|+||+||||||.|+||++|+|+|+++||||||+|||+|+|||++|||||+||++||+||||+++|
T Consensus         2 ~~CqVdgC~~dls~~k~YhrRhrvCe~H~ka~~V~v~G~~~RfCQqC~rFH~L~eFD~~krSCr~rL~~hn~RRRk~~~~   81 (81)
T d1ul4a_           2 RLCQVDRCTADMKEAKLYHRRHKVCEVHAKASSVFLSGLNQRFCQQCSRFHDLQEFDEAKRSCRRRLAGHNERRRKSSGE   81 (81)
T ss_dssp             CCCSSTTCCCCCTTCCHHHHHTTCCHHHHTCSCEEETTEEEEECTTTSSEEETTTCCSSCCSCSTTTTCCCCCCCSCCCC
T ss_pred             CeeeeCCCcchHHhhHHhhhhhHHHHHHcCCCeEEECCeechHHHHhcccccHHHhccccccHHHHHHHHhHHhccCCCC
Confidence            47999999999999999999999999999999999999999999999999999999999999999999999999999986

>d1ul5a_ g.72.1.1 (A:) Squamosa promoter binding protein-like 7, DNA-binding domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: SBT domain
superfamily: SBT domain
family: SBT domain
domain: Squamosa promoter binding protein-like 7, DNA-binding domain
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=100.00  E-value=9.8e-43  Score=275.34  Aligned_cols=83  Identities=43%  Similarity=0.938  Sum_probs=80.8

Q ss_pred             CCceecCCCcccccccccccccccchhhhcCCCeEEECCeeeehhhhcccccccccccCcchhHHHHHhHHHhhhcCCCC
Q 021420           21 IPSCLVDGCTADLGKCRDYHRRHKVCEIHSKTPKVTIHGREQRFCQQCSRFHSLEEFDEGKRSCRKRLDGHNRRRRKPQP  100 (312)
Q Consensus        21 ~~~CqV~GC~~dLs~~k~Y~rR~rvCe~H~ka~~V~v~G~~~RFCQQC~rFH~L~eFDg~kRSCR~rL~~hn~RRRk~q~  100 (312)
                      .++||||||++||+.+|+||+||||||.|+|||+|+|+|+++||||||+|||+|+|||++|||||+||++||+||||+++
T Consensus         1 ~~rCqV~gC~~dls~~k~Y~rRhrvCe~H~ka~~V~v~G~~~RfCQqC~rFH~L~eFD~~krSCr~rL~~hn~RRRk~~~   80 (86)
T d1ul5a_           1 VARCQVPDCEADISELKGYHKRHRVCLRCATASFVVLDGENKRYCQQCGKFHLLPDFDEGKRSCRRKLERHNNRRKRKPV   80 (86)
T ss_dssp             CCSCEETTEECCCSSCCSSSGGGTCCHHHHHHSEEEETTEEEEECTTTSSEEEGGGBCSSTTSBSSSCCCSSSCCCCCSC
T ss_pred             CCeeeeCCCcchhhhCHHhhhhhHHHHHhcCCCeEEECCeechHHHHhccccChhhhccccccHHHHHHHHHHHhccCCc
Confidence            36899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCc
Q 021420          101 DSL  103 (312)
Q Consensus       101 ~~~  103 (312)
                      +..
T Consensus        81 ~~~   83 (86)
T d1ul5a_          81 DKG   83 (86)
T ss_dssp             SSC
T ss_pred             ccc
Confidence            865

>d1wj0a_ g.72.1.1 (A:) Squamosa-promoter binding-like protein 12, DNA-binding domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: SBT domain
superfamily: SBT domain
family: SBT domain
domain: Squamosa-promoter binding-like protein 12, DNA-binding domain
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.97  E-value=1.5e-32  Score=203.17  Aligned_cols=57  Identities=68%  Similarity=1.184  Sum_probs=56.0

Q ss_pred             CceecCCCcccccccccccccccchhhhcCCCeEEECCeeeehhhhccccccccccc
Q 021420           22 PSCLVDGCTADLGKCRDYHRRHKVCEIHSKTPKVTIHGREQRFCQQCSRFHSLEEFD   78 (312)
Q Consensus        22 ~~CqV~GC~~dLs~~k~Y~rR~rvCe~H~ka~~V~v~G~~~RFCQQC~rFH~L~eFD   78 (312)
                      .+||||||++||+.+|+|||||||||.|+|||+|+|+|+++||||||+|||+|+|||
T Consensus         2 ~~CqV~gC~~dl~~~k~YhrRhkvCe~H~ka~~V~v~G~~~RFCQQCsrFH~L~eFD   58 (58)
T d1wj0a_           2 ICCQVDNCGADLSKVKDYHRRHKVCEIHSKATTALVGGIMQRFCQQCSRFHVLEEFD   58 (58)
T ss_dssp             EECSSTTCCCEETSCCSSTTTTTCCHHHHTCSCEEETTEEECCCSSSCSCCBTTSCC
T ss_pred             ceeEeCCcchhhhhhHHhcchhhHHHHhcCCCeEEECCcccccccccCCcccccccC
Confidence            479999999999999999999999999999999999999999999999999999998