Citrus Sinensis ID: 021432

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310--

MARRKLLLLLKPFDVYTVRQSNGISHITNPLILQHLENRCKVHKDAINFCQDILSKKPIEWEPVFRNNLSRPIRNVDLVVTVGGDGTLLQAGHLIDDSIPVLGVNSDPTRGEEVDMLSNEFDASRSKGYLCAATVNNFEQLLDNILEGKTVPSNLSRILIRVNSKSLPTFALNDILIAHPCPAMVSRFSFKIKSDGMPCSPLVNCRSSGLRVSTAAGSSAAMLSAGGFIMPILSHDLQYMVREPISPAAATSSLIHGLVKSDQSMEAMWFCKEGFVYIDGSHVFVSIQNGDVIEISSKAPALKVFLPPNLVY

cccEEEEEEEccccccccEEcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccEEEccccccccccccccEEEEEccccHHHHHHHHccccccEEEEEccccccccccccccccccccccEEEcccccccHHHHHHHHHccccccEEEEEEEEEEccEEcccccEEEEEEEccccccEEEEEEEEccccccccccEEEEccEEEEEcccHHHHHHHcccccccccccccccEEEEEEccccccccccEEEcccccEEEEEEEcccEEEEEEccccccEEcccccEEEEEEcccEEEEEccccccc

ccHHEEEEEEccccccccccccEEEccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHcccEEEEEccccHHHHHHHHHcccccEEEEccccccHHHHHHHHHHHHHcccccEEccccHHHHHHHHHHHHcccccccHEEEEEEEEcccccccccHcEEEEcccccEEEEEEEEEEcccEEEccccEEEccccEEEEccccHHHHHHcccccccccccccccEEEEEcccccccccccEEEccccEEEEEEEcccccEEEEEcccEEEEEcccccEEEEEEccccEEEEccccccc

MARRKLLLLlkpfdvytvrqsngishitnpLILQHLENRCKVHKDAINFCQDIlskkpiewepvfrnnlsrpirnvDLVVTVggdgtllqaghliddsipvlgvnsdptrgeeVDMLSNefdasrskgylcAATVNNFEQLLDNIlegktvpsnLSRILIRvnskslptfalndiliahpcpamvsrfsfkiksdgmpcsplvncrssglrvstaagSSAAMLSAGGFIMPILSHDLQymvrepispaaaTSSLIHGLVKSDQSMEAMWFCKEGFVYIDGSHVFVSiqngdvieisskapalkvflppnlvy

marrklllLLKPFDVYTVRQSNGISHITNPLILQHLENRCKVHKDAINFCQDILSKKPIEWEPVFrnnlsrpirnvDLVVTVGGDGTLLQaghliddsipvLGVNSDPTRGEEVDMLSNEFDASRSKGYLCAATVNNFEQLLDNILEGKTVPSNLSRILIRVNSKSLPTFALNDILIAHPCPAMVSRFSFKIKSDGMPCSPLVNCRSSGLRVSTAAGSSAAMLSAGGFIMPILSHDLQYMVREPISPAAATSSLIHGLVKSDQSMEAMWFCKEGFVYIDGSHVFVSIQNGDVIEISskapalkvflppnlvy

MARRKLLLLLKPFDVYTVRQSNGISHITNPLILQHLENRCKVHKDAINFCQDILSKKPIEWEPVFRNNLSRPIRNvdlvvtvggdgtllQAGHLIDDSIPVLGVNSDPTRGEEVDMLSNEFDASRSKGYLCAATVNNFEQLLDNILEGKTVPSNLSRILIRVNSKSLPTFALNDILIAHPCPAMVSRFSFKIKSDGMPCSPLVNCRSSGLRVSTaagssaamlsaggFIMPILSHDLQYMVREPISPAAATSSLIHGLVKSDQSMEAMWFCKEGFVYIDGSHVFVSIQNGDVIEISSKAPALKVFLPPNLVY

*****LLLLLKPFDVYTVRQSNGISHITNPLILQHLENRCKVHKDAINFCQDILSKKPIEWEPVFRNNLSRPIRNVDLVVTVGGDGTLLQAGHLIDDSIPVLGV*********************SKGYLCAATVNNFEQLLDNILEGKTVPSNLSRILIRVNSKSLPTFALNDILIAHPCPAMVSRFSFKIKSDGMPCSPLVNCRSSGLRVSTAAGSSAAMLSAGGFIMPILSHDLQYMVREPISPAAATSSLIHGLVKSDQSMEAMWFCKEGFVYIDGSHVFVSIQNGDVIEISSKAPALKVFL******

**RRKLLLLLKPFDVYTVRQSNGISHITNPLILQHLENRCKVHKDAINFCQDILSKKPIEWEPVFRNNLSRPIRNVDLVVTVGGDGTLLQAGHLIDDSIPVLGVNSDPTRGEEVDMLSNEFDASRSKGYLCAATVNNFEQLLDNILEGKTVPSNLSRILIRVNSKSLPTFALNDILIAHPCPAMVSRFSFKIKSDGMPCSPLVNCRSSGLRVSTAAGSSAAMLSAGGFIMPILSHDLQYMVREPISPAAATSSLIHGLVKSDQSMEAMWFCKEGFVYIDGSHVFVSIQNGDVIEISSKAPALKVFLPPNLV*

MARRKLLLLLKPFDVYTVRQSNGISHITNPLILQHLENRCKVHKDAINFCQDILSKKPIEWEPVFRNNLSRPIRNVDLVVTVGGDGTLLQAGHLIDDSIPVLGVNSDPTRGEEVDMLSNEFDASRSKGYLCAATVNNFEQLLDNILEGKTVPSNLSRILIRVNSKSLPTFALNDILIAHPCPAMVSRFSFKIKSDGMPCSPLVNCRS***********SAAMLSAGGFIMPILSHDLQYMVREPISPAAATSSLIHGLVKSDQSMEAMWFCKEGFVYIDGSHVFVSIQNGDVIEISSKAPALKVFLPPNLVY

*ARRKLLLLLKPFDVYTVRQSNGISHITNPLILQHLENRCKVHKDAINFCQDILSKKPIEWEPVFRNNLSRPIRNVDLVVTVGGDGTLLQAGHLIDDSIPVLGVNSDPTRGEEVDMLSNEFDASRSKGYLCAATVNNFEQLLDNILEGKTVPSNLSRILIRVNSKSLPTFALNDILIAHPCPAMVSRFSFKIKSDGMPCSPLVNCRSSGLRVSTAAGSSAAMLSAGGFIMPILSHDLQYMVREPISPAAATSSLIHGLVKSDQSMEAMWFCKEGFVYIDGSHVFVSIQNGDVIEISSKAPALKVFLPPNLVY

oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

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no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		312	2.2.26 [Sep-21-2011]
Q500Y9		317	NADH kinase OS=Arabidopsi	yes	no	0.977	0.962	0.657	1e-115
Q6EQG2		325	Probable NADH kinase OS=O	yes	no	0.996	0.956	0.582	1e-106
Q6AL12		290	Probable inorganic polyph	yes	no	0.660	0.710	0.294	3e-12
C6A5J6		276	Probable inorganic polyph	yes	no	0.483	0.547	0.292	3e-11
A6VXA6		293	Probable inorganic polyph	yes	no	0.650	0.692	0.286	6e-11
A4XKP6		260	Probable inorganic polyph	yes	no	0.589	0.707	0.280	2e-10
B3PJ64		300	Probable inorganic polyph	yes	no	0.810	0.843	0.285	2e-10
Q661V4		279	Probable inorganic polyph	yes	no	0.663	0.741	0.258	2e-10
Q47HJ4		309	Probable inorganic polyph	yes	no	0.669	0.676	0.263	3e-10
Q82UK6		296	Probable inorganic polyph	yes	no	0.673	0.709	0.254	4e-10

>sp\|Q500Y9\|NADHK_ARATH NADH kinase OS=Arabidopsis thaliana GN=NADK3 PE=1 SV=1	Back alignment and function desciption

 Score =  413 bits (1061), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 202/307 (65%), Positives = 245/307 (79%), Gaps = 2/307 (0%)

Query: 1   MARRKLLLLLKPFDVYTVRQSNGISHITNPLILQHLENRCKVHKDAINFCQDILSKKPIE 60
           MA RKLLLLLKP D Y   Q+ G S I NP +LQ+LE+RCKVHK+AI FCQ+ILSKKP+E
Sbjct: 1   MAIRKLLLLLKPIDPYPFLQTEGASLIKNPQVLQYLESRCKVHKNAIKFCQEILSKKPVE 60

Query: 61  WEPVFRNNLSRPIRNVDLVVTVGGDGTLLQAGHLIDDSIPVLGVNSDPTRGEEVDMLSNE 120
           W+P+ RN+LS PIR+VD+V+TVGGDGTLL A H IDDS+PVLGVNSDPT+  EV+ LS++
Sbjct: 61  WKPISRNDLSHPIRDVDMVITVGGDGTLLHASHFIDDSVPVLGVNSDPTQAHEVEELSDQ 120

Query: 121 FDASRSKGYLCAATVNNFEQLLDNILEGKTVPSNLSRILIRVNSKSLPTFALNDILIAHP 180
           FDASRS G+LCAATV NFEQ+LD+IL G+ VP+ +SRI +++NS++L + ALNDILIA P
Sbjct: 121 FDASRSTGHLCAATVENFEQVLDDILFGRVVPAKVSRISLKLNSETLLSHALNDILIAQP 180

Query: 181 CPAMVSRFSFKIKS-DGMPCSPLVNCRSSGLRVSTAAGSSAAMLSAGGFIMPILSHDLQY 239
           CPA VSRFSFKIK+ DG      VNCRSSGLR+ TAAGS+AAM SAGGF+MP+LS DLQ+
Sbjct: 181 CPAAVSRFSFKIKNKDGASSPKTVNCRSSGLRICTAAGSTAAMQSAGGFVMPMLSRDLQF 240

Query: 240 MVREPISPAAATSSLIHGLVKSDQSMEAMWFCKEGFVYIDGSHVFVSIQNGDVIEISSKA 299
           MVREPISP  +T+SL+H   K DQ M+  W+   G +YIDG  V  S+Q GD IEISS A
Sbjct: 241 MVREPISP-GSTASLMHSTFKPDQFMDVNWYSDHGTIYIDGCQVQHSVQLGDTIEISSDA 299

Query: 300 PALKVFL 306
           P L VFL
Sbjct: 300 PVLNVFL 306

Phosphorylates specifically NADH. Can phosphorylate NAD with a 100-fold decrease in efficiency compared to NADH. Prefers ATP as nucleoside triphosphate substrate. Can also utilize UTP, GTP and CTP. Key source of the cellular reductant NADPH which is an important antioxidant factor.
Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 7EC: .EC: 1EC: .EC: 8EC: 6

>sp\|Q6EQG2\|NADHK_ORYSJ Probable NADH kinase OS=Oryza sativa subsp. japonica GN=Os09g0345700 PE=2 SV=1	Back alignment and function description

>sp\|Q6AL12\|PPNK_DESPS Probable inorganic polyphosphate/ATP-NAD kinase OS=Desulfotalea psychrophila (strain LSv54 / DSM 12343) GN=ppnK PE=3 SV=1	Back alignment and function description

>sp\|C6A5J6\|PPNK_THESM Probable inorganic polyphosphate/ATP-NAD kinase OS=Thermococcus sibiricus (strain MM 739 / DSM 12597) GN=ppnK PE=3 SV=1	Back alignment and function description

>sp\|A6VXA6\|PPNK_MARMS Probable inorganic polyphosphate/ATP-NAD kinase OS=Marinomonas sp. (strain MWYL1) GN=ppnK PE=3 SV=1	Back alignment and function description

>sp\|A4XKP6\|PPNK_CALS8 Probable inorganic polyphosphate/ATP-NAD kinase OS=Caldicellulosiruptor saccharolyticus (strain ATCC 43494 / DSM 8903) GN=ppnK PE=3 SV=1	Back alignment and function description

>sp\|B3PJ64\|PPNK_CELJU Probable inorganic polyphosphate/ATP-NAD kinase OS=Cellvibrio japonicus (strain Ueda107) GN=ppnK PE=3 SV=1	Back alignment and function description

>sp\|Q661V4\|PPNK_BORGA Probable inorganic polyphosphate/ATP-NAD kinase OS=Borrelia garinii (strain PBi) GN=ppnK PE=3 SV=1	Back alignment and function description

>sp\|Q47HJ4\|PPNK_DECAR Probable inorganic polyphosphate/ATP-NAD kinase OS=Dechloromonas aromatica (strain RCB) GN=ppnK PE=3 SV=1	Back alignment and function description

>sp\|Q82UK6\|PPNK_NITEU Probable inorganic polyphosphate/ATP-NAD kinase OS=Nitrosomonas europaea (strain ATCC 19718 / NBRC 14298) GN=ppnK PE=3 SV=1	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		312
224119072		309	predicted protein [Populus trichocarpa]	0.980	0.990	0.743	1e-130
225461802		315	PREDICTED: NADH kinase [Vitis vinifera]	0.996	0.987	0.681	1e-120
255582689		313	NADH kinase, putative [Ricinus communis]	0.926	0.923	0.681	1e-117
449438903		330	PREDICTED: NADH kinase-like [Cucumis sat	0.990	0.936	0.655	1e-115
297839729		317	ATNADK-3/NADK3 kinase 3 [Arabidopsis lyr	0.977	0.962	0.664	1e-113
30699338		317	NAD(H) kinase 3 [Arabidopsis thaliana] g	0.977	0.962	0.657	1e-113
356542349		303	PREDICTED: NADH kinase-like [Glycine max	0.903	0.930	0.706	1e-113
110743209		317	hypothetical protein [Arabidopsis thalia	0.977	0.962	0.654	1e-112
356549612		304	PREDICTED: NADH kinase-like [Glycine max	0.900	0.924	0.706	1e-111
4836874		336	Hypothetical protein [Arabidopsis thalia	0.977	0.907	0.619	1e-109

>gi\|224119072\|ref\|XP_002331318.1\| predicted protein [Populus trichocarpa] gi\|222873901\|gb\|EEF11032.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

 Score =  469 bits (1207), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 229/308 (74%), Positives = 260/308 (84%), Gaps = 2/308 (0%)

Query: 1   MARRKLLLLLKPFDVYTVRQSNGISHITNPLILQHLENRCKVHKDAINFCQDILSKKP-I 59
           MARR+LLL+LKPFDVY   QSNG S ITN    ++L+NR KVHKDAINFCQDIL KK  I
Sbjct: 1   MARRRLLLMLKPFDVYQFGQSNGGSSITNSQAFRYLDNRRKVHKDAINFCQDILRKKSNI 60

Query: 60  EWEPVFRNNLSRPIRNVDLVVTVGGDGTLLQAGHLIDDSIPVLGVNSDPTRGEEVDMLSN 119
           +WEP+ R NLS+PIRN DLVVTVGGDGTLLQA H +DDSIPVLGVNSDPT+ +EV+  SN
Sbjct: 61  DWEPILRTNLSQPIRNFDLVVTVGGDGTLLQASHFLDDSIPVLGVNSDPTQVKEVEKFSN 120

Query: 120 EFDASRSKGYLCAATVNNFEQLLDNILEGKTVPSNLSRILIRVNSKSLPTFALNDILIAH 179
           EFDA+RS GYLCAATV +FEQ+LD+IL G+ VPSNLSRI + VNS+ L T+ALNDILIA 
Sbjct: 121 EFDATRSTGYLCAATVQSFEQVLDDILAGQKVPSNLSRISLSVNSQPLSTYALNDILIAD 180

Query: 180 PCPAMVSRFSFKIKSDGMPCSPLVNCRSSGLRVSTAAGSSAAMLSAGGFIMPILSHDLQY 239
           PCPA VSRFSF+I+ D   C PLVNCRSSGLRVSTAAGS+AAMLSAGGF MP+LS DLQY
Sbjct: 181 PCPATVSRFSFRIQRDSESCGPLVNCRSSGLRVSTAAGSTAAMLSAGGFAMPVLSEDLQY 240

Query: 240 MVREPISPAAATSSLIHGLVKSDQSMEAMWFCKEGFVYIDGSHVFVSIQNGDVIEISSKA 299
           MVREPISP AA   L+HG++KSDQSM+A WF K+G +YIDGSHVF SIQ+GD IEISSKA
Sbjct: 241 MVREPISPGAAI-RLMHGVIKSDQSMKASWFSKKGVIYIDGSHVFHSIQHGDTIEISSKA 299

Query: 300 PALKVFLP 307
           P LKVFLP
Sbjct: 300 PGLKVFLP 307

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|225461802\|ref\|XP_002283669.1\| PREDICTED: NADH kinase [Vitis vinifera] gi\|302142814\|emb\|CBI20109.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

>gi\|255582689\|ref\|XP_002532123.1\| NADH kinase, putative [Ricinus communis] gi\|223528203\|gb\|EEF30263.1\| NADH kinase, putative [Ricinus communis]	Back alignment and taxonomy information

>gi\|449438903\|ref\|XP_004137227.1\| PREDICTED: NADH kinase-like [Cucumis sativus] gi\|449483188\|ref\|XP_004156517.1\| PREDICTED: NADH kinase-like [Cucumis sativus]	Back alignment and taxonomy information

>gi\|297839729\|ref\|XP_002887746.1\| ATNADK-3/NADK3 kinase 3 [Arabidopsis lyrata subsp. lyrata] gi\|297333587\|gb\|EFH64005.1\| ATNADK-3/NADK3 kinase 3 [Arabidopsis lyrata subsp. lyrata]	Back alignment and taxonomy information

>gi\|30699338\|ref\|NP_177980.2\| NAD(H) kinase 3 [Arabidopsis thaliana] gi\|75276303\|sp\|Q500Y9.1\|NADHK_ARATH RecName: Full=NADH kinase; Short=AtNADK-3 gi\|63025184\|gb\|AAY27065.1\| At1g78590 [Arabidopsis thaliana] gi\|193885167\|gb\|ACF28397.1\| At1g78590 [Arabidopsis thaliana] gi\|332198003\|gb\|AEE36124.1\| NAD(H) kinase 3 [Arabidopsis thaliana]	Back alignment and taxonomy information

>gi\|356542349\|ref\|XP_003539629.1\| PREDICTED: NADH kinase-like [Glycine max]	Back alignment and taxonomy information

>gi\|110743209\|dbj\|BAE99495.1\| hypothetical protein [Arabidopsis thaliana]	Back alignment and taxonomy information

>gi\|356549612\|ref\|XP_003543186.1\| PREDICTED: NADH kinase-like [Glycine max]	Back alignment and taxonomy information

>gi\|4836874\|gb\|AAD30577.1\|AC007260_8 Hypothetical protein [Arabidopsis thaliana]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		312
TAIR\|locus:2202975		317	NADK3 "NAD(H) kinase 3" [Arabi	0.977	0.962	0.583	4e-90

TAIR\|locus:2202975 NADK3 "NAD(H) kinase 3" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 899 (321.5 bits), Expect = 4.0e-90, P = 4.0e-90
 Identities = 179/307 (58%), Positives = 219/307 (71%)

Query:     1 MARRKLLLLLKPFDVYTVRQSNGISHITNPLILQHLENRCKVHKDAINFCQDILSKKPIE 60
             MA RKLLLLLKP D Y   Q+ G S I NP +LQ+LE+RCKVHK+AI FCQ+ILSKKP+E
Sbjct:     1 MAIRKLLLLLKPIDPYPFLQTEGASLIKNPQVLQYLESRCKVHKNAIKFCQEILSKKPVE 60

Query:    61 WEPVFRNNLSRPIRNXXXXXXXXXXXXXXQAGHLIDDSIPVLGVNSDPTRGEEVDMLSNE 120
             W+P+ RN+LS PIR+               A H IDDS+PVLGVNSDPT+  EV+ LS++
Sbjct:    61 WKPISRNDLSHPIRDVDMVITVGGDGTLLHASHFIDDSVPVLGVNSDPTQAHEVEELSDQ 120

Query:   121 FDASRSKGYLCAATVNNFEQLLDNILEGKTVPSNLSRILIRVNSKSLPTFALNDILIAHP 180
             FDASRS G+LCAATV NFEQ+LD+IL G+ VP+ +SRI +++NS++L + ALNDILIA P
Sbjct:   121 FDASRSTGHLCAATVENFEQVLDDILFGRVVPAKVSRISLKLNSETLLSHALNDILIAQP 180

Query:   181 CPAMVSRFSFKIKS-DGMPCSPLVNCRSSGLRVSTXXXXXXXXXXXXXFIMPILSHDLQY 239
             CPA VSRFSFKIK+ DG      VNCRSSGLR+ T             F+MP+LS DLQ+
Sbjct:   181 CPAAVSRFSFKIKNKDGASSPKTVNCRSSGLRICTAAGSTAAMQSAGGFVMPMLSRDLQF 240

Query:   240 MVREPISPAAATSSLIHGLVKSDQSMEAMWFCKEGFVYIDGSHVFVSIQNGDVIEISSKA 299
             MVREPISP + T+SL+H   K DQ M+  W+   G +YIDG  V  S+Q GD IEISS A
Sbjct:   241 MVREPISPGS-TASLMHSTFKPDQFMDVNWYSDHGTIYIDGCQVQHSVQLGDTIEISSDA 299

Query:   300 PALKVFL 306
             P L VFL
Sbjct:   300 PVLNVFL 306


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.321   0.137   0.407    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      312       285   0.00085  115 3  11 22  0.48    33
                                                     33  0.42    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  608 (65 KB)
  Total size of DFA:  200 KB (2113 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  23.06u 0.13s 23.19t   Elapsed:  00:00:01
  Total cpu time:  23.06u 0.13s 23.19t   Elapsed:  00:00:01
  Start:  Mon May 20 19:58:43 2013   End:  Mon May 20 19:58:44 2013

GO:0003951 "NAD+ kinase activity" evidence=IEA;ISS;IDA

GO:0005737 "cytoplasm" evidence=ISM;IDA

GO:0008152 "metabolic process" evidence=IEA

GO:0019363 "pyridine nucleotide biosynthetic process" evidence=ISS

GO:0005829 "cytosol" evidence=IDA

GO:0006741 "NADP biosynthetic process" evidence=IMP;TAS

GO:0042736 "NADH kinase activity" evidence=IDA

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q6EQG2	NADHK_ORYSJ	2, ., 7, ., 1, ., 8, 6	0.5825	0.9967	0.9569	yes	no
Q500Y9	NADHK_ARATH	2, ., 7, ., 1, ., 8, 6	0.6579	0.9775	0.9621	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
4th Layer	2.7.1.86	0.991
3rd Layer	2.7.1	0.976

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	gw1.168.23.1	NAD+ kinase/NADH kinase (EC-2.7.1.86) (335 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
	gw1.I.1484.1	NADH kinase/NAD kinase (EC-2.7.1.86) (520 aa)	•	•	0.455

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		312
PLN02929		301	PLN02929, PLN02929, NADH kinase	1e-178
pfam01513		243	pfam01513, NAD_kinase, ATP-NAD kinase	4e-20
COG0061		281	COG0061, nadF, NAD kinase [Coenzyme metabolism]	8e-19
PRK03708		277	PRK03708, ppnK, inorganic polyphosphate/ATP-NAD ki	4e-15
PRK01231		295	PRK01231, ppnK, inorganic polyphosphate/ATP-NAD ki	3e-14
PRK01185		271	PRK01185, ppnK, inorganic polyphosphate/ATP-NAD ki	5e-14
PRK02155		291	PRK02155, ppnK, NAD(+)/NADH kinase family protein;	5e-12
PRK04539		296	PRK04539, ppnK, inorganic polyphosphate/ATP-NAD ki	7e-12
PRK14075		256	PRK14075, pnk, inorganic polyphosphate/ATP-NAD kin	1e-11
PRK14076		569	PRK14076, pnk, inorganic polyphosphate/ATP-NAD kin	5e-11
PRK04761		246	PRK04761, ppnK, inorganic polyphosphate/ATP-NAD ki	5e-10
PRK01911		292	PRK01911, ppnK, inorganic polyphosphate/ATP-NAD ki	1e-09
PRK02645		305	PRK02645, ppnK, inorganic polyphosphate/ATP-NAD ki	1e-08
PRK03378		292	PRK03378, ppnK, inorganic polyphosphate/ATP-NAD ki	2e-08
PRK14077		287	PRK14077, pnk, inorganic polyphosphate/ATP-NAD kin	1e-07
PRK02231		272	PRK02231, ppnK, inorganic polyphosphate/ATP-NAD ki	2e-05
PRK02649		305	PRK02649, ppnK, inorganic polyphosphate/ATP-NAD ki	6e-05
PRK03372		306	PRK03372, ppnK, inorganic polyphosphate/ATP-NAD ki	2e-04
TIGR01373		407	TIGR01373, soxB, sarcosine oxidase, beta subunit f	6e-04
COG3199		355	COG3199, COG3199, Predicted inorganic polyphosphat	6e-04
PRK04885		265	PRK04885, ppnK, inorganic polyphosphate/ATP-NAD ki	8e-04
PLN02935		508	PLN02935, PLN02935, Bifunctional NADH kinase/NAD(+	0.001
TIGR02483		324	TIGR02483, PFK_mixed, phosphofructokinase	0.004

>gnl\|CDD\|215502 PLN02929, PLN02929, NADH kinase	Back alignment and domain information

 Score =  493 bits (1271), Expect = e-178
 Identities = 189/300 (63%), Positives = 225/300 (75%)

Query: 12  PFDVYTVRQSNGISHITNPLILQHLENRCKVHKDAINFCQDILSKKPIEWEPVFRNNLSR 71
           PFDVY  RQ  G    TNP +L++LE+R KVHKD +NFC+DIL +K ++WE V RN LS+
Sbjct: 1   PFDVYPFRQLEGSGRATNPKVLEYLEDRHKVHKDTVNFCKDILQQKSVDWECVLRNELSQ 60

Query: 72  PIRNVDLVVTVGGDGTLLQAGHLIDDSIPVLGVNSDPTRGEEVDMLSNEFDASRSKGYLC 131
           PIR+VDLVV VGGDGTLLQA H +DDSIPVLGVNSDPT+ +EV+  S+EFDA RS G+LC
Sbjct: 61  PIRDVDLVVAVGGDGTLLQASHFLDDSIPVLGVNSDPTQKDEVEEYSDEFDARRSTGHLC 120

Query: 132 AATVNNFEQLLDNILEGKTVPSNLSRILIRVNSKSLPTFALNDILIAHPCPAMVSRFSFK 191
           AAT  +FEQ+LD++L G+  P+ LSRI   VN   L T ALND+LIAHP PA VSRFSF+
Sbjct: 121 AATAEDFEQVLDDVLFGRLKPTELSRISTVVNGTLLETPALNDVLIAHPSPAAVSRFSFR 180

Query: 192 IKSDGMPCSPLVNCRSSGLRVSTAAGSSAAMLSAGGFIMPILSHDLQYMVREPISPAAAT 251
           +   G    PL+N RSSGLRVSTAAGS+AAMLSAGGF MP+LS DLQYMVREPISP    
Sbjct: 181 VGRQGGSSGPLINVRSSGLRVSTAAGSTAAMLSAGGFPMPLLSRDLQYMVREPISPGHPP 240

Query: 252 SSLIHGLVKSDQSMEAMWFCKEGFVYIDGSHVFVSIQNGDVIEISSKAPALKVFLPPNLV 311
            SL+HG  K  Q M+  W  ++G +YIDGSHV  SI+ GD IEISS AP LKVFL    +
Sbjct: 241 KSLMHGFYKPGQHMQVRWNSRKGTIYIDGSHVMHSIKLGDTIEISSDAPPLKVFLSHWFL 300

Length = 301

>gnl\|CDD\|216543 pfam01513, NAD_kinase, ATP-NAD kinase	Back alignment and domain information

>gnl\|CDD\|223139 COG0061, nadF, NAD kinase [Coenzyme metabolism]	Back alignment and domain information

>gnl\|CDD\|179635 PRK03708, ppnK, inorganic polyphosphate/ATP-NAD kinase; Provisional	Back alignment and domain information

>gnl\|CDD\|179257 PRK01231, ppnK, inorganic polyphosphate/ATP-NAD kinase; Provisional	Back alignment and domain information

>gnl\|CDD\|179241 PRK01185, ppnK, inorganic polyphosphate/ATP-NAD kinase; Provisional	Back alignment and domain information

>gnl\|CDD\|179379 PRK02155, ppnK, NAD(+)/NADH kinase family protein; Provisional	Back alignment and domain information

>gnl\|CDD\|179862 PRK04539, ppnK, inorganic polyphosphate/ATP-NAD kinase; Provisional	Back alignment and domain information

>gnl\|CDD\|184489 PRK14075, pnk, inorganic polyphosphate/ATP-NAD kinase; Provisional	Back alignment and domain information

>gnl\|CDD\|237601 PRK14076, pnk, inorganic polyphosphate/ATP-NAD kinase; Provisional	Back alignment and domain information

>gnl\|CDD\|179876 PRK04761, ppnK, inorganic polyphosphate/ATP-NAD kinase; Reviewed	Back alignment and domain information

>gnl\|CDD\|179352 PRK01911, ppnK, inorganic polyphosphate/ATP-NAD kinase; Provisional	Back alignment and domain information

>gnl\|CDD\|179455 PRK02645, ppnK, inorganic polyphosphate/ATP-NAD kinase; Provisional	Back alignment and domain information

>gnl\|CDD\|235122 PRK03378, ppnK, inorganic polyphosphate/ATP-NAD kinase; Provisional	Back alignment and domain information

>gnl\|CDD\|172567 PRK14077, pnk, inorganic polyphosphate/ATP-NAD kinase; Provisional	Back alignment and domain information

>gnl\|CDD\|167337 PRK02231, ppnK, inorganic polyphosphate/ATP-NAD kinase; Provisional	Back alignment and domain information

>gnl\|CDD\|179456 PRK02649, ppnK, inorganic polyphosphate/ATP-NAD kinase; Provisional	Back alignment and domain information

>gnl\|CDD\|235121 PRK03372, ppnK, inorganic polyphosphate/ATP-NAD kinase; Provisional	Back alignment and domain information

>gnl\|CDD\|233383 TIGR01373, soxB, sarcosine oxidase, beta subunit family, heterotetrameric form	Back alignment and domain information

>gnl\|CDD\|225740 COG3199, COG3199, Predicted inorganic polyphosphate/ATP-NAD kinase [General function prediction only]	Back alignment and domain information

>gnl\|CDD\|235317 PRK04885, ppnK, inorganic polyphosphate/ATP-NAD kinase; Provisional	Back alignment and domain information

>gnl\|CDD\|215505 PLN02935, PLN02935, Bifunctional NADH kinase/NAD(+) kinase	Back alignment and domain information

>gnl\|CDD\|233887 TIGR02483, PFK_mixed, phosphofructokinase	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		312
PLN02929		301	NADH kinase	100.0
PRK14077		287	pnk inorganic polyphosphate/ATP-NAD kinase; Provis	100.0
PRK04539		296	ppnK inorganic polyphosphate/ATP-NAD kinase; Provi	100.0
PRK01911		292	ppnK inorganic polyphosphate/ATP-NAD kinase; Provi	100.0
PRK02649		305	ppnK inorganic polyphosphate/ATP-NAD kinase; Provi	100.0
PRK03372		306	ppnK inorganic polyphosphate/ATP-NAD kinase; Provi	100.0
PRK01185		271	ppnK inorganic polyphosphate/ATP-NAD kinase; Provi	100.0
PRK03378		292	ppnK inorganic polyphosphate/ATP-NAD kinase; Provi	100.0
PRK03501		264	ppnK inorganic polyphosphate/ATP-NAD kinase; Provi	100.0
PRK02231		272	ppnK inorganic polyphosphate/ATP-NAD kinase; Provi	100.0
PRK02155		291	ppnK NAD(+)/NADH kinase family protein; Provisiona	100.0
PLN02935		508	Bifunctional NADH kinase/NAD(+) kinase	100.0
PRK01231		295	ppnK inorganic polyphosphate/ATP-NAD kinase; Provi	100.0
PRK03708		277	ppnK inorganic polyphosphate/ATP-NAD kinase; Provi	100.0
PRK04885		265	ppnK inorganic polyphosphate/ATP-NAD kinase; Provi	100.0
PRK00561		259	ppnK inorganic polyphosphate/ATP-NAD kinase; Provi	100.0
PRK14076		569	pnk inorganic polyphosphate/ATP-NAD kinase; Provis	100.0
PLN02727		986	NAD kinase	100.0
PRK14075		256	pnk inorganic polyphosphate/ATP-NAD kinase; Provis	100.0
COG0061		281	nadF NAD kinase [Coenzyme metabolism]	100.0
PRK02645		305	ppnK inorganic polyphosphate/ATP-NAD kinase; Provi	100.0
PF01513		285	NAD_kinase: ATP-NAD kinase; InterPro: IPR002504 Me	100.0
PRK04761		246	ppnK inorganic polyphosphate/ATP-NAD kinase; Revie	100.0
KOG2178		409	consensus Predicted sugar kinase [Carbohydrate tra	100.0
KOG4180		395	consensus Predicted kinase [General function predi	100.0
COG1597		301	LCB5 Sphingosine kinase and enzymes related to euk	98.36
TIGR00147		293	lipid kinase, YegS/Rv2252/BmrU family. The E. coli	98.31
PRK00861		300	putative lipid kinase; Reviewed	98.16
PRK12361		547	hypothetical protein; Provisional	97.97
PRK11914		306	diacylglycerol kinase; Reviewed	97.7
PRK13337		304	putative lipid kinase; Reviewed	97.55
PRK13055		334	putative lipid kinase; Reviewed	97.48
PRK13054		300	lipid kinase; Reviewed	97.47
PRK13057		287	putative lipid kinase; Reviewed	97.37
PRK13059		295	putative lipid kinase; Reviewed	97.3
COG3199		355	Predicted inorganic polyphosphate/ATP-NAD kinase [	97.16
PLN02958		481	diacylglycerol kinase/D-erythro-sphingosine kinase	96.81
TIGR03702		293	lip_kinase_YegS lipid kinase YegS. Members of this	96.34
PF00781		130	DAGK_cat: Diacylglycerol kinase catalytic domain;	95.35
COG0205		347	PfkA 6-phosphofructokinase [Carbohydrate transport	95.1
smart00046		124	DAGKc Diacylglycerol kinase catalytic domain (pres	94.41
PLN02204		601	diacylglycerol kinase	91.73
PRK14071		360	6-phosphofructokinase; Provisional	90.4
TIGR02483		324	PFK_mixed phosphofructokinase. Members of this fam	90.38
TIGR02482		301	PFKA_ATP 6-phosphofructokinase. 6-phosphofructokin	90.11
cd00763		317	Bacterial_PFK Phosphofructokinase, a key regulator	88.77
PLN02884		411	6-phosphofructokinase	88.28
cd01743		184	GATase1_Anthranilate_Synthase Type 1 glutamine ami	86.65
PRK06895		190	putative anthranilate synthase component II; Provi	85.56
PRK03202		320	6-phosphofructokinase; Provisional	84.9
KOG4435		535	consensus Predicted lipid kinase [Lipid transport	82.54
PTZ00286		459	6-phospho-1-fructokinase; Provisional	82.0
PRK06555		403	pyrophosphate--fructose-6-phosphate 1-phosphotrans	81.88
cd00363		338	PFK Phosphofructokinase, a key regulatory enzyme i	81.29
PRK14072		416	6-phosphofructokinase; Provisional	80.55
CHL00101		190	trpG anthranilate synthase component 2	80.18

>PLN02929 NADH kinase	Back alignment and domain information

Probab=100.00  E-value=1.4e-68  Score=499.67  Aligned_cols=296  Identities=63%  Similarity=0.981  Sum_probs=267.8

Q ss_pred             ccccccccCCCcccccchhHHHhhhhhhhhhhhhHHHHHHhhhcCCcceeecccccCCCccccccEEEEEcCCcceEeec
Q 021432           13 FDVYTVRQSNGISHITNPLILQHLENRCKVHKDAINFCQDILSKKPIEWEPVFRNNLSRPIRNVDLVVTVGGDGTLLQAG   92 (312)
Q Consensus        13 ~~i~~n~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~Dlvi~lGGDGT~L~a~   92 (312)
                      +++|+-++.+...+...++++.+|++||+.|+++.+.++++|+++|++|..+.+.++...+.++|+||++|||||||+|+
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~h~~~~~~~~~~L~~~gi~~~~v~r~~~~~~~~~~Dlvi~lGGDGT~L~aa   81 (301)
T PLN02929          2 FDVYPFRQLEGSGRATNPKVLEYLEDRHKVHKDTVNFCKDILQQKSVDWECVLRNELSQPIRDVDLVVAVGGDGTLLQAS   81 (301)
T ss_pred             CccccccccCcccccCChHHHHHHHHhhhhhHHHHHHHHHHHHHcCCEEEEeeccccccccCCCCEEEEECCcHHHHHHH
Confidence            45667677788889999999999999999999999999999999999998888877755678999999999999999999


Q ss_pred             ccCCCCcceeeccCCCCchhHHhhhhhccccccccccchHHhhhcHHHHHHHHhcCccccCccceEEEEecCcccCcccc
Q 021432           93 HLIDDSIPVLGVNSDPTRGEEVDMLSNEFDASRSKGYLCAATVNNFEQLLDNILEGKTVPSNLSRILIRVNSKSLPTFAL  172 (312)
Q Consensus        93 ~~~~~~~PilGIN~G~~~~~~~~~~~~~~~~~~~~GfL~~~~~~~~~~~l~~l~~g~~~~~~~~rl~~~~~g~~~~~~AL  172 (312)
                      |.++.++||+|||+||...+++++++|+||+.|++||||+++++++++.|+++++|+|.+++|+|+++.++|+....+||
T Consensus        82 ~~~~~~iPvlGIN~Gp~~~~~~~~~~~~~~~~r~lGfL~~~~~~~~~~~L~~il~g~~~~~~r~~L~~~v~g~~~~~~AL  161 (301)
T PLN02929         82 HFLDDSIPVLGVNSDPTQKDEVEEYSDEFDARRSTGHLCAATAEDFEQVLDDVLFGRLKPTELSRISTVVNGTLLETPAL  161 (301)
T ss_pred             HHcCCCCcEEEEECCCcccccccccccccccccCccccccCCHHHHHHHHHHHHcCCceEEEeeeEEEEecCCcccceEe
Confidence            97766899999999998778889999999999999999999999999999999999999999999999998876655899


Q ss_pred             cchhhhcCCccccceeEEEEecCCCCCCCCcccccCCeeeeecccchHHHHhcCCeeecccccchhhhhhccCCccchhh
Q 021432          173 NDILIAHPCPAMVSRFSFKIKSDGMPCSPLVNCRSSGLRVSTAAGSSAAMLSAGGFIMPILSHDLQYMVREPISPAAATS  252 (312)
Q Consensus       173 NDv~I~~~~~~~~~~~~~~v~~~~~~~~~~~~~~gDGviVsTptGSTAY~lSAGG~v~Pi~~p~l~~~v~tPi~p~~l~~  252 (312)
                      ||++|.++.++++++|+++++.+++...++.+|+|||+|||||||||||++||||++|||++|+++++++||||||+ +.
T Consensus       162 NEv~I~~~~~~~~~~~~v~i~~~g~~~~~~~~~~~DGliVsTpTGSTAY~lSAGG~i~Piv~P~l~~~vltPI~Ph~-~~  240 (301)
T PLN02929        162 NDVLIAHPSPAAVSRFSFRVGRQGGSSGPLINVRSSGLRVSTAAGSTAAMLSAGGFPMPLLSRDLQYMVREPISPGH-PP  240 (301)
T ss_pred             eEEEEccCCCccEEEEEEEEcCccCCCceeEEeecCcEEEeCCccHHHHHHhcCCCCCCCCCcccceEEEEeeCCCC-CC
Confidence            99999999999999999999743321126788999999999999999999999999999999999999999999999 66


Q ss_pred             hhh-hccccCCceeeEEEeeecceEEEcCcceEEEeecCCeEEEccCCCeeeeecCCC
Q 021432          253 SLI-HGLVKSDQSMEAMWFCKEGFVYIDGSHVFVSIQNGDVIEISSKAPALKVFLPPN  309 (312)
Q Consensus       253 ~~~-~~vv~~~~~i~i~~~~~~~~l~iDG~~~~~~l~~gd~v~I~~s~~~~~l~~~~~  309 (312)
                      ||+ +++++++++|++++.++++.+++||++..+.++.||+|+|+++++.++++++..
T Consensus       241 r~l~~~vv~~~~~i~i~~~~~~~~i~iDG~~~~~~l~~gd~i~I~~s~~~l~l~~~~~  298 (301)
T PLN02929        241 KSLMHGFYKPGQHMQVRWNSRKGTIYIDGSHVMHSIKLGDTIEISSDAPPLKVFLSHW  298 (301)
T ss_pred             CCccccEECCCCeEEEEEeCCCEEEEECCCcceEecCCCCEEEEEECCCeEEEEEehh
Confidence            654 778999999999987778899999965678899999999999999999998764

>PRK14077 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional	Back alignment and domain information

>PRK04539 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional	Back alignment and domain information

>PRK01911 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional	Back alignment and domain information

>PRK02649 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional	Back alignment and domain information

>PRK03372 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional	Back alignment and domain information

>PRK01185 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional	Back alignment and domain information

>PRK03378 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional	Back alignment and domain information

>PRK03501 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional	Back alignment and domain information

>PRK02231 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional	Back alignment and domain information

>PRK02155 ppnK NAD(+)/NADH kinase family protein; Provisional	Back alignment and domain information

>PLN02935 Bifunctional NADH kinase/NAD(+) kinase	Back alignment and domain information

>PRK01231 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional	Back alignment and domain information

>PRK03708 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional	Back alignment and domain information

>PRK04885 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional	Back alignment and domain information

>PRK00561 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional	Back alignment and domain information

>PRK14076 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional	Back alignment and domain information

>PLN02727 NAD kinase	Back alignment and domain information

>PRK14075 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional	Back alignment and domain information

>COG0061 nadF NAD kinase [Coenzyme metabolism]	Back alignment and domain information

>PRK02645 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional	Back alignment and domain information

>PF01513 NAD_kinase: ATP-NAD kinase; InterPro: IPR002504 Members of this family are ATP-NAD kinases 2	Back alignment and domain information

>PRK04761 ppnK inorganic polyphosphate/ATP-NAD kinase; Reviewed	Back alignment and domain information

>KOG2178 consensus Predicted sugar kinase [Carbohydrate transport and metabolism]	Back alignment and domain information

>KOG4180 consensus Predicted kinase [General function prediction only]	Back alignment and domain information

>COG1597 LCB5 Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase [Lipid metabolism / General function prediction only]	Back alignment and domain information

>TIGR00147 lipid kinase, YegS/Rv2252/BmrU family	Back alignment and domain information

>PRK00861 putative lipid kinase; Reviewed	Back alignment and domain information

>PRK12361 hypothetical protein; Provisional	Back alignment and domain information

>PRK11914 diacylglycerol kinase; Reviewed	Back alignment and domain information

>PRK13337 putative lipid kinase; Reviewed	Back alignment and domain information

>PRK13055 putative lipid kinase; Reviewed	Back alignment and domain information

>PRK13054 lipid kinase; Reviewed	Back alignment and domain information

>PRK13057 putative lipid kinase; Reviewed	Back alignment and domain information

>PRK13059 putative lipid kinase; Reviewed	Back alignment and domain information

>COG3199 Predicted inorganic polyphosphate/ATP-NAD kinase [General function prediction only]	Back alignment and domain information

>PLN02958 diacylglycerol kinase/D-erythro-sphingosine kinase	Back alignment and domain information

>TIGR03702 lip_kinase_YegS lipid kinase YegS	Back alignment and domain information

>PF00781 DAGK_cat: Diacylglycerol kinase catalytic domain; InterPro: IPR001206 The DAG-kinase catalytic domain or DAGKc domain is present in mammalian lipid kinases, such as diacylglycerol (DAG), ceramide and sphingosine kinases, as well as in related bacterial proteins [, ]	Back alignment and domain information

>COG0205 PfkA 6-phosphofructokinase [Carbohydrate transport and metabolism]	Back alignment and domain information

>smart00046 DAGKc Diacylglycerol kinase catalytic domain (presumed)	Back alignment and domain information

>PLN02204 diacylglycerol kinase	Back alignment and domain information

>PRK14071 6-phosphofructokinase; Provisional	Back alignment and domain information

>TIGR02483 PFK_mixed phosphofructokinase	Back alignment and domain information

>TIGR02482 PFKA_ATP 6-phosphofructokinase	Back alignment and domain information

>cd00763 Bacterial_PFK Phosphofructokinase, a key regulatory enzyme in glycolysis, catalyzes the phosphorylation of fructose-6-phosphate to fructose-1,6-biphosphate	Back alignment and domain information

>PLN02884 6-phosphofructokinase	Back alignment and domain information

>cd01743 GATase1_Anthranilate_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in Anthranilate synthase	Back alignment and domain information

>PRK06895 putative anthranilate synthase component II; Provisional	Back alignment and domain information

>PRK03202 6-phosphofructokinase; Provisional	Back alignment and domain information

>KOG4435 consensus Predicted lipid kinase [Lipid transport and metabolism; Signal transduction mechanisms]	Back alignment and domain information

>PTZ00286 6-phospho-1-fructokinase; Provisional	Back alignment and domain information

>PRK06555 pyrophosphate--fructose-6-phosphate 1-phosphotransferase; Validated	Back alignment and domain information

>cd00363 PFK Phosphofructokinase, a key regulatory enzyme in glycolysis, catalyzes the phosphorylation of fructose-6-phosphate to fructose-1,6-biphosphate	Back alignment and domain information

>PRK14072 6-phosphofructokinase; Provisional	Back alignment and domain information

>CHL00101 trpG anthranilate synthase component 2	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		312
1yt5_A		258	Inorganic polyphosphate/ATP-NAD kinase; domain 1:	9e-29
1z0s_A		278	Probable inorganic polyphosphate/ATP-NAD kinase; A	3e-25
2an1_A		292	Putative kinase; structural genomics, PSI, protein	3e-25
1u0t_A		307	Inorganic polyphosphate/ATP-NAD kinase; alpha-beta	2e-24
2i2c_A		272	Probable inorganic polyphosphate/ATP-NAD kinase 1;	3e-22
3afo_A		388	NADH kinase POS5; alpha/beta+BETA sandwich, ATP-bi	5e-22
3pfn_A		365	NAD kinase; structural genomics consortium, SNP, S	3e-20

>1yt5_A Inorganic polyphosphate/ATP-NAD kinase; domain 1: alpha/beta domain2: beta sandwich, structural genomics, PSI, protein structure initiative; 2.30A {Thermotoga maritima} Length = 258	Back alignment and structure

 Score =  110 bits (276), Expect = 9e-29
 Identities = 55/263 (20%), Positives = 101/263 (38%), Gaps = 50/263 (19%)

Query: 44  KDAINFCQDILSKKPIEWEPVFRNNLSRPIRNVDLVVTVGGDGTLLQAGHLIDDSIPVLG 103
           +    F ++ +SK+    E  F    +      DL+V VGGDGT+L+A     D  P++G
Sbjct: 12  EKEGEFLKEKISKEHEVIE--FGEANAPGRVTADLIVVVGGDGTVLKAAKKAADGTPMVG 69

Query: 104 VNSDPTRGEEVDMLSNEFDASRSKGYLCAATVNNFEQLLDNILEGKTVPSNLSRILIRVN 163
                  G                G+L + T++  ++ L+++           R  I++ 
Sbjct: 70  FK----AG--------------RLGFLTSYTLDEIDRFLEDLRNWNFREET--RWFIQIE 109

Query: 164 SKSLPTFALNDILIAHPCPA-MVSRFSFKIKSDGMPCSPLVNCRSSGLRVSTAAGSSAAM 222
           S+     ALND+ +       MV     +++ +       +   + G+ +ST  GS+A  
Sbjct: 110 SELGNHLALNDVTLERDLSGKMV---EIEVEVEH---HSSMWFFADGVVISTPTGSTAYS 163

Query: 223 LSAGGFIMPILSHDLQYMVREPISPAAATSSLIHGL-----VKSDQSMEAMWFCKEGFVY 277
           LS GG   PI+  + + +   PI+P                V        +   ++  + 
Sbjct: 164 LSIGG---PIIFPECEVLEISPIAP--------QFFLTRSVVIPSNFKVVVESQRDINML 212

Query: 278 IDGSHVFVSIQNGDVIEISSKAP 300
           +DG    V       IE+  K+ 
Sbjct: 213 VDG----VLTGKTKRIEV-KKSR 230

PyMOL of 1yt5

>1z0s_A Probable inorganic polyphosphate/ATP-NAD kinase; ATP-binding, structural genomics, NADP, PSI, protein structure initiative; HET: ATP; 1.70A {Archaeoglobus fulgidus} SCOP: e.52.1.1 PDB: 1z0u_A* 1z0z_A* 1suw_A* Length = 278	Back alignment and structure

>2an1_A Putative kinase; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG, transferase; 2.00A {Salmonella typhimurium} Length = 292	Back alignment and structure

>1u0t_A Inorganic polyphosphate/ATP-NAD kinase; alpha-beta, beta sandwich, structural genomics, PSI, protein structure initiative; 2.30A {Mycobacterium tuberculosis} SCOP: e.52.1.1 PDB: 1u0r_A 1y3i_A* 1y3h_A Length = 307	Back alignment and structure

>2i2c_A Probable inorganic polyphosphate/ATP-NAD kinase 1; NADP bound of lmnadk1, transferase; HET: DTA PG4; 1.85A {Listeria monocytogenes egd-e} PDB: 2i1w_A* 2i2a_A* 2i2b_A* 2i29_A* 2i2d_A* 2i2e_A* 3v7u_A* 3v7w_A* 3v7y_A* 3v80_A* 3v8m_A* 3v8n_A* 3v8p_A* 4dy6_A* 2i2f_A* 2q5f_A* 3v8q_A* 3v8r_A* Length = 272	Back alignment and structure

>3afo_A NADH kinase POS5; alpha/beta+BETA sandwich, ATP-binding, mitochondrion NADP, nucleotide-binding, transferase, transit peptide; HET: NAI; 2.00A {Saccharomyces cerevisiae} Length = 388	Back alignment and structure

>3pfn_A NAD kinase; structural genomics consortium, SNP, SGC, transferase; 2.70A {Homo sapiens} Length = 365	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		312
3pfn_A		365	NAD kinase; structural genomics consortium, SNP, S	100.0
1z0s_A		278	Probable inorganic polyphosphate/ATP-NAD kinase; A	100.0
3afo_A		388	NADH kinase POS5; alpha/beta+BETA sandwich, ATP-bi	100.0
1u0t_A		307	Inorganic polyphosphate/ATP-NAD kinase; alpha-beta	100.0
2i2c_A		272	Probable inorganic polyphosphate/ATP-NAD kinase 1;	100.0
2an1_A		292	Putative kinase; structural genomics, PSI, protein	100.0
1yt5_A		258	Inorganic polyphosphate/ATP-NAD kinase; domain 1:	100.0
2qv7_A		337	Diacylglycerol kinase DGKB; alpha-beta domain 1, b	99.79
2bon_A		332	Lipid kinase; DAG kinase, transferase; 1.90A {Esch	99.59
3s40_A		304	Diacylglycerol kinase; structural genomics, the ce	98.09
1pfk_A		320	Phosphofructokinase; transferase(phosphotransferas	87.79
1zxx_A		319	6-phosphofructokinase; allosteric regulation, lact	87.58
4a3s_A		319	6-phosphofructokinase; transferase, glycolysis, de	86.41

>3pfn_A NAD kinase; structural genomics consortium, SNP, SGC, transferase; 2.70A {Homo sapiens}	Back alignment and structure

Probab=100.00  E-value=4.9e-57  Score=432.47  Aligned_cols=268  Identities=22%  Similarity=0.332  Sum_probs=210.3

Q ss_pred             cccchhhcccccccccccCCCcccccchhHHHhhhhhhhhhhhhHHHHHHh---hhcCCcce---e-ecccccCCCcccc
Q 021432            3 RRKLLLLLKPFDVYTVRQSNGISHITNPLILQHLENRCKVHKDAINFCQDI---LSKKPIEW---E-PVFRNNLSRPIRN   75 (312)
Q Consensus         3 ~~~~~~~~k~~~i~~n~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~---l~~~~~~~---~-~~~~~~l~~~~~~   75 (312)
                      ++++++|.|.-        .........++..||.+++.... .++.+.+.   .+......   . ...........++
T Consensus        38 ~k~I~iv~K~~--------~~~~~~~~~~l~~~L~~~~~~V~-ve~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  108 (365)
T 3pfn_A           38 PKSVLVIKKMR--------DASLLQPFKELCTHLMEENMIVY-VEKKVLEDPAIASDESFGAVKKKFCTFREDYDDISNQ  108 (365)
T ss_dssp             CCEEEEEECTT--------CGGGHHHHHHHHHHHHHTSCEEE-EEHHHHHSHHHHHCSTTHHHHHHCEEECTTTCCCTTT
T ss_pred             CCEEEEEecCC--------CHHHHHHHHHHHHHHHHCCCEEE-EehHHhhhhccccccccccccccccccccChhhcccC
Confidence            45666665522        34455677899999999985321 11222221   11111100   0 0001122233468


Q ss_pred             ccEEEEEcCCcceEeecccCC-CCcceeeccCCCCchhHHhhhhhccccccccccchHHhhhcHHHHHHHHhcCccccCc
Q 021432           76 VDLVVTVGGDGTLLQAGHLID-DSIPVLGVNSDPTRGEEVDMLSNEFDASRSKGYLCAATVNNFEQLLDNILEGKTVPSN  154 (312)
Q Consensus        76 ~Dlvi~lGGDGT~L~a~~~~~-~~~PilGIN~G~~~~~~~~~~~~~~~~~~~~GfL~~~~~~~~~~~l~~l~~g~~~~~~  154 (312)
                      +|+||+||||||||+|++.+. ..+||+|||+|                  ++|||+++++++++++++++++|+|.+++
T Consensus       109 ~DlvI~lGGDGT~L~aa~~~~~~~~PvlGiN~G------------------~LGFLt~~~~~~~~~~l~~vl~g~~~v~~  170 (365)
T 3pfn_A          109 IDFIICLGGDGTLLYASSLFQGSVPPVMAFHLG------------------SLGFLTPFSFENFQSQVTQVIEGNAAVVL  170 (365)
T ss_dssp             CSEEEEESSTTHHHHHHHHCSSSCCCEEEEESS------------------SCTTTCCEESTTHHHHHHHHHHSCCBEEE
T ss_pred             CCEEEEEcChHHHHHHHHHhccCCCCEEEEcCC------------------CCccceeecHHHHHHHHHHHHcCCCeEEE
Confidence            999999999999999998754 57999999999                  89999999999999999999999999999


Q ss_pred             cceEEEEec----------------------------Ccc-cCcccccchhhhcCCccccceeEEEEecCCCCCCCCccc
Q 021432          155 LSRILIRVN----------------------------SKS-LPTFALNDILIAHPCPAMVSRFSFKIKSDGMPCSPLVNC  205 (312)
Q Consensus       155 ~~rl~~~~~----------------------------g~~-~~~~ALNDv~I~~~~~~~~~~~~~~v~~~~~~~~~~~~~  205 (312)
                      |+|+++.+.                            |+. ...+|||||+|.+...+++++++++++  ++   ++.+|
T Consensus       171 R~~L~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ALNEvvI~r~~~~~m~~~~v~id--g~---~~~~~  245 (365)
T 3pfn_A          171 RSRLKVRVVKELRGKKTAVHNGLGEKGSQAAGLDMDVGKQAMQYQVLNEVVIDRGPSSYLSNVDVYLD--GH---LITTV  245 (365)
T ss_dssp             ECCEEEEEEC-----------------------------CEEEEEESSEEEEECTTCSSCCCEEEEET--TE---EEEEE
T ss_pred             EeeEEEEEEeccccccccccccccccccccccccccCCceeeccCccceEEEecCCCCcEEEEEEEEC--CE---EEEEE
Confidence            999998763                            332 246899999999988888999998885  54   57899


Q ss_pred             ccCCeeeeecccchHHHHhcCCeeecccccchhhhhhccCCccchhhhhhhccccCCceeeEEEee---ecceEEEcCcc
Q 021432          206 RSSGLRVSTAAGSSAAMLSAGGFIMPILSHDLQYMVREPISPAAATSSLIHGLVKSDQSMEAMWFC---KEGFVYIDGSH  282 (312)
Q Consensus       206 ~gDGviVsTptGSTAY~lSAGG~v~Pi~~p~l~~~v~tPi~p~~l~~~~~~~vv~~~~~i~i~~~~---~~~~l~iDG~~  282 (312)
                      +|||||||||||||||||||||   ||++|+++++++||||||+++.||+  |++++.+|+|++..   ..+.+++||+ 
T Consensus       246 ~aDGlIVSTPTGSTAYslSAGG---PIv~P~~~~i~ltPI~PhsLs~RPi--Vlp~~~~I~i~v~~~~~~~~~vs~DG~-  319 (365)
T 3pfn_A          246 QGDGVIVSTPTGSTAYAAAAGA---SMIHPNVPAIMITPICPHSLSFRPI--VVPAGVELKIMLSPEARNTAWVSFDGR-  319 (365)
T ss_dssp             CSSEEEEECGGGGGTHHHHTTC---CEECTTSCCEEEEEESCSSTTCCCE--EECTTCCEEEEECTTCSSCEEEEETTE-
T ss_pred             ecCeEEEeCCccHHHHHHhCCC---CccCCCCCeEEEEeccCCccCCCce--EECCCCEEEEEEccCCCCcEEEEEcCC-
Confidence            9999999999999999999999   9999999999999999999999998  88888889988642   2467899998 


Q ss_pred             eEEEeecCCeEEEccCCCeeeeecCC
Q 021432          283 VFVSIQNGDVIEISSKAPALKVFLPP  308 (312)
Q Consensus       283 ~~~~l~~gd~v~I~~s~~~~~l~~~~  308 (312)
                      ...++.+||+|+|++++.+++++...
T Consensus       320 ~~~~l~~gd~V~I~~s~~~~~li~~~  345 (365)
T 3pfn_A          320 KRQEIRHGDSISITTSCYPLPSICVR  345 (365)
T ss_dssp             EEEEECTTCEEEEEECSSCEEEECSS
T ss_pred             eeeecCCCCEEEEEECCCceEEEEeC
Confidence            57899999999999999999998543

PyMOL of 3pfn

>1z0s_A Probable inorganic polyphosphate/ATP-NAD kinase; ATP-binding, structural genomics, NADP, PSI, protein structure initiative; HET: ATP; 1.70A {Archaeoglobus fulgidus} SCOP: e.52.1.1 PDB: 1z0u_A* 1z0z_A* 1suw_A*	Back alignment and structure

>3afo_A NADH kinase POS5; alpha/beta+BETA sandwich, ATP-binding, mitochondrion NADP, nucleotide-binding, transferase, transit peptide; HET: NAI; 2.00A {Saccharomyces cerevisiae}	Back alignment and structure

>1u0t_A Inorganic polyphosphate/ATP-NAD kinase; alpha-beta, beta sandwich, structural genomics, PSI, protein structure initiative; 2.30A {Mycobacterium tuberculosis} SCOP: e.52.1.1 PDB: 1u0r_A 1y3i_A* 1y3h_A	Back alignment and structure

>2i2c_A Probable inorganic polyphosphate/ATP-NAD kinase 1; NADP bound of lmnadk1, transferase; HET: DTA PG4; 1.85A {Listeria monocytogenes egd-e} PDB: 2i1w_A* 2i2a_A* 2i2b_A* 2i29_A* 2i2d_A* 2i2e_A* 3v7u_A* 3v7w_A* 3v7y_A* 3v80_A* 3v8m_A* 3v8n_A* 3v8p_A* 4dy6_A* 2i2f_A* 2q5f_A* 3v8q_A* 3v8r_A*	Back alignment and structure

>2an1_A Putative kinase; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG, transferase; 2.00A {Salmonella typhimurium}	Back alignment and structure

>1yt5_A Inorganic polyphosphate/ATP-NAD kinase; domain 1: alpha/beta domain2: beta sandwich, structural genomics, PSI, protein structure initiative; 2.30A {Thermotoga maritima}	Back alignment and structure

>2qv7_A Diacylglycerol kinase DGKB; alpha-beta domain 1, beta sandwich domain 2, protein-ADP COM transferase; HET: ADP; 2.30A {Staphylococcus aureus} SCOP: e.52.1.2 PDB: 2qvl_A	Back alignment and structure

>2bon_A Lipid kinase; DAG kinase, transferase; 1.90A {Escherichia coli} SCOP: e.52.1.2 PDB: 2jgr_A 2p1r_A	Back alignment and structure

>3s40_A Diacylglycerol kinase; structural genomics, the center for structural genomics of infectious diseases, csgid, transfer; 2.10A {Bacillus anthracis} PDB: 3t5p_A	Back alignment and structure

>1pfk_A Phosphofructokinase; transferase(phosphotransferase); HET: FBP ADP; 2.40A {Escherichia coli} SCOP: c.89.1.1 PDB: 2pfk_A	Back alignment and structure

>1zxx_A 6-phosphofructokinase; allosteric regulation, lactobacillus BU transferase; 1.85A {Lactobacillus delbrueckii subsp}	Back alignment and structure

>4a3s_A 6-phosphofructokinase; transferase, glycolysis, degradosome; 2.30A {Bacillus subtilis} PDB: 6pfk_A 3u39_A 3pfk_A 4pfk_A* 1mto_A*	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	E-value
Query		312
d1z0sa1		249	e.52.1.1 (A:1-249) Inorganic polyphosphate/ATP-NAD	3e-19
d1u0ta_		302	e.52.1.1 (A:) Inorganic polyphosphate/ATP-NAD kina	6e-17

>d1z0sa1 e.52.1.1 (A:1-249) Inorganic polyphosphate/ATP-NAD kinase PpnK {Archaeoglobus fulgidus [TaxId: 2234]} Length = 249	Back information, alignment and structure


class: Multi-domain proteins (alpha and beta)
fold: NAD kinase/diacylglycerol kinase-like
superfamily: NAD kinase/diacylglycerol kinase-like
family: NAD kinase-like
domain: Inorganic polyphosphate/ATP-NAD kinase PpnK
species: Archaeoglobus fulgidus [TaxId: 2234]

 Score = 82.9 bits (204), Expect = 3e-19
 Identities = 60/262 (22%), Positives = 98/262 (37%), Gaps = 40/262 (15%)

Query: 44  KDAINFCQDILSKKPIEWEPVFRNNLSRPIRNVDLVVTVGGDGTLLQAGHLIDDSIPVLG 103
              +   ++ L +  +E E    N  S  + N D +V+VGGDGT+L+    +    P+ G
Sbjct: 10  DGHVKRIEEALKRLEVEVELF--NQPSEELENFDFIVSVGGDGTILRILQKLKRCPPIFG 67

Query: 104 VNSDPTRGEEVDMLSNEFDASRSKGYLCAATVNNFEQLLDNILEGKTVPSNLSRILIRVN 163
           +N+                     G L  A+  NFE  L   +E       + R      
Sbjct: 68  INTGR------------------VGLLTHASPENFEVELKKAVE----KFEVERFPRVSC 105

Query: 164 SKSLPTFALNDILIAHPCPAMVSRFSFKIKSDGMPCSPLVNCRSSGLRVSTAAGSSAAML 223
           S      ALN+I +    PA +   + +     +    +   R  G  V+T  GS+    
Sbjct: 106 SAMPDVLALNEIAVLSRKPAKMIDVALR-----VDGVEVDRIRCDGFIVATQIGSTGYAF 160

Query: 224 SAGGFIMPILSHDLQYMVREPISPAAATSSLIHGLVKSDQSMEAMWFCKEGFVYIDGSHV 283
           SAGG   P++   L+  +  PI+P           V S +  +     ++  V  DG   
Sbjct: 161 SAGG---PVVEPYLECFILIPIAP---FRFGWKPYVVSMER-KIEVIAEKAIVVADGQK- 212

Query: 284 FVSIQNGDVIEIS-SKAPALKV 304
             S+     I I  S+ PA+  
Sbjct: 213 --SVDFDGEITIEKSEFPAVFF 232

PyMOL of d1z0sa1

>d1u0ta_ e.52.1.1 (A:) Inorganic polyphosphate/ATP-NAD kinase PpnK {Mycobacterium tuberculosis [TaxId: 1773]} Length = 302	Back information, alignment and structure

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		312
d1u0ta_		302	Inorganic polyphosphate/ATP-NAD kinase PpnK {Mycob	100.0
d1z0sa1		249	Inorganic polyphosphate/ATP-NAD kinase PpnK {Archa	100.0
d2bona1		295	Lipid kinase YegS {Escherichia coli [TaxId: 562]}	97.88
d2qv7a1		312	Diacylglycerol kinase DgkB {Staphylococcus aureus	97.55
d2a9va1		196	GMP synthase subunit A, GuaAA {Archaeon Thermoplas	80.46

>d1u0ta_ e.52.1.1 (A:) Inorganic polyphosphate/ATP-NAD kinase PpnK {Mycobacterium tuberculosis [TaxId: 1773]}	Back information, alignment and structure

class: Multi-domain proteins (alpha and beta)
fold: NAD kinase/diacylglycerol kinase-like
superfamily: NAD kinase/diacylglycerol kinase-like
family: NAD kinase-like
domain: Inorganic polyphosphate/ATP-NAD kinase PpnK
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=100.00  E-value=4.1e-56  Score=415.85  Aligned_cols=269  Identities=22%  Similarity=0.290  Sum_probs=210.9

Q ss_pred             cccccccccCCCcccccchhHHHhhhhhhhhhhhhHHH-HHH--------hhhcCCcceeecccccCCCccccccEEEEE
Q 021432           12 PFDVYTVRQSNGISHITNPLILQHLENRCKVHKDAINF-CQD--------ILSKKPIEWEPVFRNNLSRPIRNVDLVVTV   82 (312)
Q Consensus        12 ~~~i~~n~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-~~~--------~l~~~~~~~~~~~~~~l~~~~~~~Dlvi~l   82 (312)
                      ++.++.|.. ++.+...+.++.+||++++....-.... ...        .+...+......  .......+++|+||++
T Consensus         2 ~v~lv~~~~-k~~a~~~a~~i~~~L~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~Dlvi~l   78 (302)
T d1u0ta_           2 SVLLVVHTG-RDEATETARRVEKVLGDNKIALRVLSAEAVDRGSLHLAPDDMRAMGVEIEVV--DADQHAADGCELVLVL   78 (302)
T ss_dssp             EEEEEESSS-GGGGSHHHHHHHHHHHTTTCEEEEEC-------------------------------------CCCEEEE
T ss_pred             EEEEEEeCC-CHHHHHHHHHHHHHHHHCCCEEEEEecchhcccccccCchhhhhcCcccccc--cccccccccccEEEEE
Confidence            344555555 7888888899999999999743211110 000        011111111100  1111234678999999


Q ss_pred             cCCcceEeecccC-CCCcceeeccCCCCchhHHhhhhhccccccccccchHHhhhcHHHHHHHHhcCccccCccceEEEE
Q 021432           83 GGDGTLLQAGHLI-DDSIPVLGVNSDPTRGEEVDMLSNEFDASRSKGYLCAATVNNFEQLLDNILEGKTVPSNLSRILIR  161 (312)
Q Consensus        83 GGDGT~L~a~~~~-~~~~PilGIN~G~~~~~~~~~~~~~~~~~~~~GfL~~~~~~~~~~~l~~l~~g~~~~~~~~rl~~~  161 (312)
                      |||||||+|+|.+ +.++||||||+|                  ++|||++++++++++.++++++|+|.+++++++++.
T Consensus        79 GGDGT~L~a~~~~~~~~~PilGin~G------------------~lGFL~~~~~~~~~~~l~~~~~g~~~~~~r~~l~~~  140 (302)
T d1u0ta_          79 GGDGTFLRAAELARNASIPVLGVNLG------------------RIGFLAEAEAEAIDAVLEHVVAQDYRVEDRLTLDVV  140 (302)
T ss_dssp             ECHHHHHHHHHHHHHHTCCEEEEECS------------------SCCSSCSEEGGGHHHHHHHHHHTCCEEEEECCEEEE
T ss_pred             cCChHHHHHHHHhhccCCeEEEeCCC------------------ccceecccchhHHHHHHHHHHhcCcceeeeeeeeeE
Confidence            9999999999865 457999999999                  899999999999999999999999999999998876


Q ss_pred             e--cCcc-cCcccccchhhhcCCccccceeEEEEecCCCCCCCCcccccCCeeeeecccchHHHHhcCCeeecccccchh
Q 021432          162 V--NSKS-LPTFALNDILIAHPCPAMVSRFSFKIKSDGMPCSPLVNCRSSGLRVSTAAGSSAAMLSAGGFIMPILSHDLQ  238 (312)
Q Consensus       162 ~--~g~~-~~~~ALNDv~I~~~~~~~~~~~~~~v~~~~~~~~~~~~~~gDGviVsTptGSTAY~lSAGG~v~Pi~~p~l~  238 (312)
                      +  +++. ...+||||++|.+...+++..+.+++  |++   ++.+|+|||+|||||||||||++||||   ||++|+++
T Consensus       141 ~~~~~~~~~~~~alNdvvi~~~~~~~~~~~~v~i--~~~---~~~~~~~DGlivSTPtGSTAYslSaGG---PIv~p~~~  212 (302)
T d1u0ta_         141 VRQGGRIVNRGWALNEVSLEKGPRLGVLGVVVEI--DGR---PVSAFGCDGVLVSTPTGSTAYAFSAGG---PVLWPDLE  212 (302)
T ss_dssp             EEETTEEEEEEEESSEEEEECSSSSSCEEEEEES--SSS---EEEEEEESEEEEECTGGGGTHHHHTTC---CEECTTCC
T ss_pred             eccCCceeeehhhhhhhhcccCcccceeeEEEEe--cce---eEEEeecceEEEehhhccCcchhhccC---cccccccc
Confidence            5  3333 24679999999998888888877777  454   578899999999999999999999999   99999999


Q ss_pred             hhhhccCCccchhhhhhhccccCCceeeEEEe--eecceEEEcCcceEEEeecCCeEEEccCCCeeeeecCCCCCC
Q 021432          239 YMVREPISPAAATSSLIHGLVKSDQSMEAMWF--CKEGFVYIDGSHVFVSIQNGDVIEISSKAPALKVFLPPNLVY  312 (312)
Q Consensus       239 ~~v~tPi~p~~l~~~~~~~vv~~~~~i~i~~~--~~~~~l~iDG~~~~~~l~~gd~v~I~~s~~~~~l~~~~~~~~  312 (312)
                      ++++||||||+++.||+  |++++++|+++..  ++++.+++||+ ....+++|++|.|+++++.++++.+++++|
T Consensus       213 ~i~vtpi~p~sl~~rpl--Vl~~~~~i~i~~~~~~~~~~v~~DG~-~~~~l~~~d~I~I~~s~~~~~lv~~~~~~f  285 (302)
T d1u0ta_         213 AILVVPNNAHALFGRPM--VTSPEATIAIEIEADGHDALVFCDGR-REMLIPAGSRLEVTRCVTSVKWARLDSAPF  285 (302)
T ss_dssp             CEEEEEESCSSSCCCCE--EECTTCCEEEEECTTSCCEEEEETTT-EEEEECTTCEEEEEECSSCEEEEECSCCCH
T ss_pred             cccccccccccccCceE--EecCCcEEEEEEecCCCCEEEEEECC-ccEEeCCCCEEEEEECCCEEEEEEeCCCCH
Confidence            99999999999999998  8998999998864  35678999997 688999999999999999999999888776

PyMOL of d1u0ta_

>d1z0sa1 e.52.1.1 (A:1-249) Inorganic polyphosphate/ATP-NAD kinase PpnK {Archaeoglobus fulgidus [TaxId: 2234]}	Back information, alignment and structure

>d2bona1 e.52.1.2 (A:5-299) Lipid kinase YegS {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d2qv7a1 e.52.1.2 (A:1-312) Diacylglycerol kinase DgkB {Staphylococcus aureus [TaxId: 1280]}	Back information, alignment and structure

>d2a9va1 c.23.16.1 (A:1-196) GMP synthase subunit A, GuaAA {Archaeon Thermoplasma acidophilum [TaxId: 2303]}	Back information, alignment and structure