Citrus Sinensis ID: 021445

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310--
Protein Sequence
MARPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRVIKGFMIQGGDISAGDGTGGESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFFITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTITDCGEIPEGADDGISNFFNDGDSYPDWPADLDQTPNELSWWMNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQVSIILL
Secondary Structure (PSIPRED)
ccccEEEEEEEEccEEEcEEEEEEccccccHHHHHHHHHHHcccccccccccccccccccccEEEcccEEEccccccccccccccccccccccccccccccccccHHHcccccccccccEEEEcccccccccccEEEEEEEEcHHHHHHHHHccccccccccccEEEEccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHcHHHHHHccHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHcccccHHHHHHHHHHHcccc
Secondary Structure Prediction (SSPRO)
ccccEEEEEEEEccEEEEEEEEEEcccccHHHHHHHHHHHHccccEccccccEccccccEEEEEEcccEEEEccccccccccccccccccEcccccccccccccEEEEcccccccEcccEEEEccccHHHcccccEEEEEEEcHHHHHHHHcccEcccccEcccEEEEEEEEccccccccccccccccccccccHHHcccccccHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHc
Coil and Loop (DISEMBL)
marprcfldISIGVELEGRIIVEIYNDVIPKTAENFRALCtgekgigpntgvplhykgvRFHRVIKGFMiqggdisagdgtggesiyglkfedenfeLKHERKGMLSmanagpntngsqffitttrtshldgkhVVFGRVIKGMGVVRSIEHvmtgdndcpiadvtitdcgeipegaddgisnffndgdsypdwpadldqtpnELSWWMNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICwekegidegkssslrktksqiftnssacklKLGDLKGALLDTEFAMRDGDDNVKALFRQGQVSIILL
Flexible Loop (DISEMBL)
marprcfldisigvelegRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRVIKGFMIQGGDISAGDGTGGESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFFITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHvmtgdndcpiaDVTITDCGEIPEGADDGISNFFNDGDSYPDWPADLDQTPNELSWWMNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWekegidegkssslrktksqiftnssacklkLGDLKGALLDTEFAMRDGDDNVKALFrqgqvsiill
Low Complexity Region (SEG)
MARPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRVIKGFMIQggdisagdgtggESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFFITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTITDCGEIPEGADDGISNFFNDGDSYPDWPADLDQTPNELSWWMNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACklklgdlkgalldTEFAMRDGDDNVKALFRQGQVSIILL
Disordered region (IsUnstruct)
****RCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRVIKGFMIQGGDISAGDGTGGESIYGLKFEDENF*********************SQFFITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTITDCGEIPEGADDGISNFFNDGDSYPDWPADLDQTPNELSWWMNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGI**************IFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQVSII**
Disordered Region (DISOPRED)
*ARPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRVIKGFMIQGGDISAGDGTGGESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFFITTTRTSHLDGKHVVFGRVIKGMGVVR***************DVTITDCGEIPEGADDGISNFFNDGDSYPDWPADLDQTPNELSWWMNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEK*********SLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQVSIILL
Disordered Region (DISEMBL)
MARPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRVIKGFMIQGGDISAGDGTGGESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFFITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTITDCGEIPEGADDGISNFFNDGDSYPDWPADLDQTPNELSWWMNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQVSIILL
Disordered Region (DISPRO)
*ARPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRVIKGFMIQGGDISAGDGTGGESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFFITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTITDCGEIPEGA***ISNFFNDGDSYPDWPADLDQTPNELSWWMNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQVSIILL
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MARPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRVIKGFMIQGGDISAGDGTGGESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFFITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTITDCGEIPEGADDGISNFFNDGDSYPDWPADLDQTPNELSWWMNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQVSIILL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	312	2.2.26 [Sep-21-2011]
Q9C566	361	Peptidyl-prolyl cis-trans	yes	no	0.996	0.861	0.819	1e-155
Q6DGG0	370	Peptidyl-prolyl cis-trans	yes	no	0.961	0.810	0.528	2e-84
Q9CR16	370	Peptidyl-prolyl cis-trans	yes	no	0.961	0.810	0.524	5e-84
P26882	370	Peptidyl-prolyl cis-trans	yes	no	0.967	0.816	0.511	6e-83
Q08752	370	Peptidyl-prolyl cis-trans	yes	no	0.967	0.816	0.514	5e-82
P0C1I1	364	Peptidyl-prolyl cis-trans	N/A	no	0.967	0.829	0.504	1e-79
Q9P3X9	375	41 kDa peptidyl-prolyl ci	N/A	no	0.977	0.813	0.489	5e-76
Q5B4E7	372	Peptidyl-prolyl cis-trans	yes	no	0.878	0.736	0.540	3e-73
Q4HXF6	372	Peptidyl-prolyl cis-trans	yes	no	0.987	0.827	0.493	9e-73
Q5U8Z7	371	Peptidyl-prolyl cis-trans	N/A	no	0.775	0.652	0.558	3e-72

>sp|Q9C566|CYP40_ARATH Peptidyl-prolyl cis-trans isomerase CYP40 OS=Arabidopsis thaliana GN=CYP40 PE=2 SV=1

 Score =  546 bits (1407), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 255/311 (81%), Positives = 277/311 (89%)

Query: 1   MARPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVR 60
           M R +CF+DISIG ELEGRI++E+Y+DV+PKTAENFR LCTGEKG+GPNTGVPLHYKG R
Sbjct: 1   MGRSKCFMDISIGGELEGRIVIELYDDVVPKTAENFRLLCTGEKGLGPNTGVPLHYKGNR 60

Query: 61  FHRVIKGFMIQGGDISAGDGTGGESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQF 120
           FHRVIKGFMIQGGDISA DGTGGESIYGLKF+DENFELKHERKGMLSMAN+GPNTNGSQF
Sbjct: 61  FHRVIKGFMIQGGDISANDGTGGESIYGLKFDDENFELKHERKGMLSMANSGPNTNGSQF 120

Query: 121 FITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTITDCGEIPEGADDG 180
           FITTTRTSHLDGKHVVFGRV KGMGVVRSIEHV   +  CP  DV I DCGEIPEGADDG
Sbjct: 121 FITTTRTSHLDGKHVVFGRVTKGMGVVRSIEHVSIEEQSCPSQDVVIHDCGEIPEGADDG 180

Query: 181 ISNFFNDGDSYPDWPADLDQTPNELSWWMNAVDSIKVFGNEHYKKQDYKMALRKYRKALR 240
           I +FF DGD YPDWP DL+++P ELSWWM  VD +K  GNEH+KKQDYKMALRKYRKALR
Sbjct: 181 ICDFFKDGDVYPDWPIDLNESPAELSWWMETVDFVKAHGNEHFKKQDYKMALRKYRKALR 240

Query: 241 YLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKA 300
           YLDICWEKEGIDE  S++LRKTKSQIFTNS+ACKLK GD KGALLDTEFAMRD D+NVKA
Sbjct: 241 YLDICWEKEGIDEETSTALRKTKSQIFTNSAACKLKFGDAKGALLDTEFAMRDEDNNVKA 300

Query: 301 LFRQGQVSIIL 311
           LFRQGQ  + L
Sbjct: 301 LFRQGQAYMAL 311

PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides. Involved in promoting the expression of the juvenile phase of vegetative development, and, to a lower extent, in regulating the positioning of floral buds, floral morphogenesis and the expression of HSPs.
Arabidopsis thaliana (taxid: 3702)
EC: 5EC: .EC: 2EC: .EC: 1EC: .EC: 8

>sp|Q6DGG0|PPID_RAT Peptidyl-prolyl cis-trans isomerase D OS=Rattus norvegicus GN=Ppid PE=1 SV=3

 Score =  312 bits (800), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 160/303 (52%), Positives = 205/303 (67%), Gaps = 3/303 (0%)

Query: 4   PRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHR 63
           PR F D+ IG E  GRI++E++ D++PKTAENFRALCTGEKG GP TG PLH+KG  FHR
Sbjct: 16  PRVFFDVDIGGERVGRIVLELFADIVPKTAENFRALCTGEKGTGPTTGKPLHFKGCPFHR 75

Query: 64  VIKGFMIQGGDISAGDGTGGESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFFIT 123
           +IK FMIQGGD S  +GTGGESIYG KFEDENF  KH+R+G+LSMANAGPNTNGSQFFIT
Sbjct: 76  IIKKFMIQGGDFSNQNGTGGESIYGEKFEDENFHYKHDREGLLSMANAGPNTNGSQFFIT 135

Query: 124 TTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTITDCGEIPEGADDGISN 183
           T  T HLDGKHVVFG+VIKG+GV R +E+V   + + P     I +CGE+ EG + GI  
Sbjct: 136 TVPTPHLDGKHVVFGQVIKGLGVARMLENVEV-NGEKPAKLCVIAECGELKEGDEWGIFP 194

Query: 184 FFNDGDSYPDWPADLDQTPNELSWWMNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLD 243
               GDS+PD+P D D    ++   +   + +K  GN  +K Q+++MA++KY K LRYLD
Sbjct: 195 KDGSGDSHPDFPEDADIDLKDVDKILLISEDLKNIGNTFFKSQNWEMAIKKYAKVLRYLD 254

Query: 244 ICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFR 303
               K  I++   S L+        N  ACKLK+ + +GA+     A+     N KAL+R
Sbjct: 255 S--SKAVIEKADVSRLQPIALSCVLNIGACKLKMSNWQGAIDSCLEALEMDPSNTKALYR 312

Query: 304 QGQ 306
           + Q
Sbjct: 313 KAQ 315

PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides.

Rattus norvegicus (taxid: 10116)

EC: 5

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 8

>sp|Q9CR16|PPID_MOUSE Peptidyl-prolyl cis-trans isomerase D OS=Mus musculus GN=Ppid PE=1 SV=3

 Score =  311 bits (796), Expect = 5e-84,   Method: Compositional matrix adjust.
 Identities = 159/303 (52%), Positives = 205/303 (67%), Gaps = 3/303 (0%)

Query: 4   PRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHR 63
           PR F D+ IG E  GRI++E++ D++PKTAENFRALCTGEKG G  TG PLH+KG  FHR
Sbjct: 16  PRVFFDVDIGGERVGRIVLELFADIVPKTAENFRALCTGEKGTGSTTGKPLHFKGCPFHR 75

Query: 64  VIKGFMIQGGDISAGDGTGGESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFFIT 123
           +IK FMIQGGD S  +GTGGESIYG KFEDENF  KH+R+G+LSMANAGPNTNGSQFFIT
Sbjct: 76  IIKKFMIQGGDFSNQNGTGGESIYGEKFEDENFHYKHDREGLLSMANAGPNTNGSQFFIT 135

Query: 124 TTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTITDCGEIPEGADDGISN 183
           T  T HLDGKHVVFG+VIKG+GV R++E+V   + + P     I +CGE+ EG D GI  
Sbjct: 136 TVPTPHLDGKHVVFGQVIKGLGVARTLENVEV-NGEKPAKLCVIAECGELKEGDDWGIFP 194

Query: 184 FFNDGDSYPDWPADLDQTPNELSWWMNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLD 243
               GDS+PD+P D D    ++   +   + +K  GN  +K Q+++MA++KY K LRY+D
Sbjct: 195 KDGSGDSHPDFPEDADIDLKDVDKILLISEDLKNIGNTFFKSQNWEMAIKKYAKVLRYVD 254

Query: 244 ICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFR 303
               K  I++   S L+        N  ACKLK+ + +GA+     A+     N KAL+R
Sbjct: 255 S--SKAVIEKADRSRLQPIALSCVLNIGACKLKMSNWQGAIDSCLEALEMDPSNTKALYR 312

Query: 304 QGQ 306
           + Q
Sbjct: 313 KAQ 315

PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides.

Mus musculus (taxid: 10090)

EC: 5

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 8

>sp|P26882|PPID_BOVIN Peptidyl-prolyl cis-trans isomerase D OS=Bos taurus GN=PPID PE=1 SV=6

 Score =  307 bits (787), Expect = 6e-83,   Method: Compositional matrix adjust.
 Identities = 156/305 (51%), Positives = 204/305 (66%), Gaps = 3/305 (0%)

Query: 2   ARPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRF 61
           + PR F D+ IG E  GRI++E++ D++PKTAENFRALCTGEKGIGP TG PLH+KG  F
Sbjct: 14  SNPRVFFDVDIGGERVGRIVLELFADIVPKTAENFRALCTGEKGIGPTTGKPLHFKGCPF 73

Query: 62  HRVIKGFMIQGGDISAGDGTGGESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFF 121
           HR+IK FMIQGGD S  +GTGGESIYG KFEDENF  KH+++G+LSMANAG NTNGSQFF
Sbjct: 74  HRIIKKFMIQGGDFSNQNGTGGESIYGEKFEDENFHYKHDKEGLLSMANAGSNTNGSQFF 133

Query: 122 ITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTITDCGEIPEGADDGI 181
           ITT  T HLDGKHVVFG+VIKGMGV + +E+V     + P     I +CGE+ EG D GI
Sbjct: 134 ITTVPTPHLDGKHVVFGQVIKGMGVAKILENVEV-KGEKPAKLCVIAECGELKEGDDWGI 192

Query: 182 SNFFNDGDSYPDWPADLDQTPNELSWWMNAVDSIKVFGNEHYKKQDYKMALRKYRKALRY 241
                 GDS+PD+P D D    ++   +   + +K  GN  +K Q+++MA++KY K LRY
Sbjct: 193 FPKDGSGDSHPDFPEDADVDLKDVDKILLISEDLKNIGNTFFKSQNWEMAIKKYTKVLRY 252

Query: 242 LDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKAL 301
           ++    +   ++   + L+        N  ACKLK+ D +GA+     A+     N KAL
Sbjct: 253 VE--GSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKAL 310

Query: 302 FRQGQ 306
           +R+ Q
Sbjct: 311 YRRAQ 315

PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides.

Bos taurus (taxid: 9913)

EC: 5

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 8

>sp|Q08752|PPID_HUMAN Peptidyl-prolyl cis-trans isomerase D OS=Homo sapiens GN=PPID PE=1 SV=3

 Score =  304 bits (779), Expect = 5e-82,   Method: Compositional matrix adjust.
 Identities = 157/305 (51%), Positives = 203/305 (66%), Gaps = 3/305 (0%)

Query: 2   ARPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRF 61
           + PR F D+ IG E  GRI++E++ D++PKTAENFRALCTGEKGIG  TG PLH+KG  F
Sbjct: 14  SNPRVFFDVDIGGERVGRIVLELFADIVPKTAENFRALCTGEKGIGHTTGKPLHFKGCPF 73

Query: 62  HRVIKGFMIQGGDISAGDGTGGESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFF 121
           HR+IK FMIQGGD S  +GTGGESIYG KFEDENF  KH+R+G+LSMANAG NTNGSQFF
Sbjct: 74  HRIIKKFMIQGGDFSNQNGTGGESIYGEKFEDENFHYKHDREGLLSMANAGRNTNGSQFF 133

Query: 122 ITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTITDCGEIPEGADDGI 181
           ITT  T HLDGKHVVFG+VIKG+GV R +E+V     + P     I +CGE+ EG D GI
Sbjct: 134 ITTVPTPHLDGKHVVFGQVIKGIGVARILENVEV-KGEKPAKLCVIAECGELKEGDDGGI 192

Query: 182 SNFFNDGDSYPDWPADLDQTPNELSWWMNAVDSIKVFGNEHYKKQDYKMALRKYRKALRY 241
                 GDS+PD+P D D    ++   +   + +K  GN  +K Q+++MA++KY + LRY
Sbjct: 193 FPKDGSGDSHPDFPEDADIDLKDVDKILLITEDLKNIGNTFFKSQNWEMAIKKYAEVLRY 252

Query: 242 LDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKAL 301
           +D    K  I+    + L+        N  ACKLK+ + +GA+     A+     N KAL
Sbjct: 253 VD--SSKAVIETADRAKLQPIALSCVLNIGACKLKMSNWQGAIDSCLEALELDPSNTKAL 310

Query: 302 FRQGQ 306
           +R+ Q
Sbjct: 311 YRRAQ 315

PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides.

Homo sapiens (taxid: 9606)

EC: 5

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 8

>sp|P0C1I1|PPID_RHIO9 Peptidyl-prolyl cis-trans isomerase D OS=Rhizopus delemar (strain RA 99-880 / ATCC MYA-4621 / FGSC 9543 / NRRL 43880) GN=cyp12 PE=3 SV=1

 Score =  296 bits (758), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 161/319 (50%), Positives = 207/319 (64%), Gaps = 17/319 (5%)

Query: 1   MARPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVR 60
           M+ PR + DI+IG + EGRI+ E++ D++PKTAENFRALCTGEKG G  +G PL Y+G  
Sbjct: 1   MSNPRVYFDITIGNKPEGRIVFELFKDIVPKTAENFRALCTGEKGEG-KSGKPLSYQGSL 59

Query: 61  FHRVIKGFMIQGGDISAGDGTGGESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQF 120
           FHR+IK FMIQGGD +AG+GTGGESIYG KFEDENF LKHE+  +LSMANAGP TNGSQF
Sbjct: 60  FHRIIKNFMIQGGDFTAGNGTGGESIYGEKFEDENFVLKHEKPFLLSMANAGPGTNGSQF 119

Query: 121 FITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTITDCGEIPEGADDG 180
           FITT  T HLDGKHVVFG+V+KG  VVR++E++ T  +D P+ D  I  CGE+ EG DDG
Sbjct: 120 FITTVPTPHLDGKHVVFGKVLKGKAVVRALENLETV-SDRPVEDAVIAKCGELAEGEDDG 178

Query: 181 ISNFFNDGDSYPDWPADLDQTPNELSWWMNAVDSIKVFGNEHYKKQDYKMALRKYRKALR 240
           I     DGD Y ++P D  + P E +  +     +K  GN ++KK D+  A +KY KA+R
Sbjct: 179 IRA-SEDGDVYEEYPDD-HEGPKEPNDVLQIATHLKDIGNTYFKKGDHANAAKKYLKAIR 236

Query: 241 YLDICWEKEGIDEGKSSSLRKTKSQI----FTNSSACKLKLGD------LKGALLDTEFA 290
           YL+   EK   DE     L    + I    + N S C LKLG+      +   +L+ +  
Sbjct: 237 YLN---EKPAFDENDPKELEGKFAAIKIPCYLNRSMCALKLGEYSECVKVTTTVLEYDSK 293

Query: 291 MRDGDDNVKALFRQGQVSI 309
                D  KA FR+G   +
Sbjct: 294 YLKPTDITKAYFRRGSAKM 312

PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides.

Rhizopus delemar (strain RA 99-880 / ATCC MYA-4621 / FGSC 9543 / NRRL 43880) (taxid: 246409)

EC: 5

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 8

>sp|Q9P3X9|PPID_NEUCR 41 kDa peptidyl-prolyl cis-trans isomerase OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=cyp-41 PE=1 SV=1

 Score =  284 bits (727), Expect = 5e-76,   Method: Compositional matrix adjust.
 Identities = 156/319 (48%), Positives = 196/319 (61%), Gaps = 14/319 (4%)

Query: 1   MARPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVR 60
            AR R F DI+IG +  GRI+ E+YND++PKTAENFRALCTGEKG+G   G PLHYKG  
Sbjct: 9   QARSRVFFDITIGGKAAGRIVFELYNDIVPKTAENFRALCTGEKGVG-KLGKPLHYKGST 67

Query: 61  FHRVIKGFMIQGGDISAGDGTGGESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQF 120
           FHRVIK FMIQGGD +AG+GTGGESIYG KFEDENF+LKH+R  +LSMANAGP TNGSQF
Sbjct: 68  FHRVIKQFMIQGGDFTAGNGTGGESIYGAKFEDENFQLKHDRPFLLSMANAGPGTNGSQF 127

Query: 121 FITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTITDCGEI----PEG 176
           F+TT  T HLDGKHVVFG V+ G  VVR IE++ T   D P  D  I DCGE+       
Sbjct: 128 FVTTVPTPHLDGKHVVFGEVLSGKSVVRQIENLKT-QGDKPTKDAVIADCGELSGDAAVS 186

Query: 177 ADDGISNFFNDGDSYPDWPAD--LDQTPNELSWWMNAVDSIKVFGNEHYKKQDYKMALRK 234
           AD   ++ +  GD Y D+P D   D  P   S  +      K FGN+ +K  D  +AL K
Sbjct: 187 ADTKTADAY--GDEYEDFPEDEATDGQPLSASKILKIATDCKDFGNKAFKAGDLPVALDK 244

Query: 235 YRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMR-- 292
           Y+K LRYL+   E +         L   +  + +N++   +KL      +   + A+   
Sbjct: 245 YQKGLRYLNEDPELDNEPADTKQKLDALRVSLNSNAALMNMKLSAWDECIRSADGALAVA 304

Query: 293 --DGDDNVKALFRQGQVSI 309
                D  KAL+R+G   +
Sbjct: 305 TISDKDRAKALYRRGYAQV 323

PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides.

Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) (taxid: 367110)

EC: 5

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 8

>sp|Q5B4E7|PPID_EMENI Peptidyl-prolyl cis-trans isomerase D OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) GN=cpr6 PE=3 SV=1

 Score =  275 bits (703), Expect = 3e-73,   Method: Compositional matrix adjust.
 Identities = 154/285 (54%), Positives = 179/285 (62%), Gaps = 11/285 (3%)

Query: 3   RPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFH 62
           RPR F DI IG +  GRI  E++NDV+PKTAENFRALCTGEKG+G   G PLH+KG  FH
Sbjct: 6   RPRVFFDIQIGQQQTGRIAFELFNDVVPKTAENFRALCTGEKGMG-KQGKPLHFKGSIFH 64

Query: 63  RVIKGFMIQGGDISAGDGTGGESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFFI 122
           RVIK FMIQGGD +A +GTGGESIYG KF DENFELKH+R  +LSMAN+GP TNGSQFFI
Sbjct: 65  RVIKQFMIQGGDFTAFNGTGGESIYGEKFPDENFELKHDRPFLLSMANSGPGTNGSQFFI 124

Query: 123 TTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTITDCGEIPEGADDGIS 182
           TT  T HLDGKHVVFG VI G  VVR IE++ T   D P  DVTI +CGE+     D   
Sbjct: 125 TTVPTPHLDGKHVVFGEVINGKSVVRKIENMPT-QADKPTTDVTIAECGELTGEDYDNAD 183

Query: 183 NFFND--GDSYPDWPADLDQTPNELSWWMNAVDSIKVFGNEHYKKQDYKMALRKYRKALR 240
               D  GD Y D+P D                 +K FGN  +K  +  + L KY+K LR
Sbjct: 184 KQTPDATGDPYEDFPDDHQGEELSAPVCFKIASELKNFGNTAFKNGNIALGLEKYQKGLR 243

Query: 241 YLDICWEKEGID----EGKSSSLRKTKSQIFTNSSACKLKLGDLK 281
           YL+   E E  D    E +  SLR T   + +NSS    KLG  K
Sbjct: 244 YLNEFPEPEENDPKDLEPQMKSLRFT---LHSNSSLLANKLGQFK 285

PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides.

Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) (taxid: 227321)

EC: 5

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 8

>sp|Q4HXF6|PPID_GIBZE Peptidyl-prolyl cis-trans isomerase D OS=Gibberella zeae (strain PH-1 / ATCC MYA-4620 / FGSC 9075 / NRRL 31084) GN=CPR6 PE=3 SV=1

 Score =  273 bits (699), Expect = 9e-73,   Method: Compositional matrix adjust.
 Identities = 156/316 (49%), Positives = 195/316 (61%), Gaps = 8/316 (2%)

Query: 2   ARPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRF 61
           ARPR + DISIG +  GRI +E+Y D++PKTA+NFR+LCTGEKGIG  +G PLHYKG  F
Sbjct: 9   ARPRVYFDISIGGKSVGRITMELYADLVPKTADNFRSLCTGEKGIG-KSGKPLHYKGSVF 67

Query: 62  HRVIKGFMIQGGDISAGDGTGGESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFF 121
           HRVIK FMIQGGD +AGDGTGGESIYG KF+DE F +KHE+  +LSMANAGPNTNGSQFF
Sbjct: 68  HRVIKQFMIQGGDFTAGDGTGGESIYGNKFDDEAFPIKHEKPFLLSMANAGPNTNGSQFF 127

Query: 122 ITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTITDCGEIPEGADDGI 181
           ITT  T HLDGKHVVFG V+ G  VVR IE++ T   D P  +  I DCGE+   A    
Sbjct: 128 ITTVPTPHLDGKHVVFGEVLNGKSVVRQIENLTTQSGDRPAKEALIVDCGELTGDAALAA 187

Query: 182 SNFFND--GDSYPDWPADLDQTPNELSWWMNAVDSIKVFGNEHYKKQDYKMALRKYRKAL 239
                D  GD Y D+P D   T + ++    A  S K +GN  +K  +Y + L KY+K L
Sbjct: 188 DVKQPDALGDPYEDFPEDCTDTLDAVAVLKIAKAS-KDYGNTAFKSGNYSLGLDKYQKGL 246

Query: 240 RYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDG----D 295
           RY++   E E   +     L   +  +  NS+   +KL     A      A+  G     
Sbjct: 247 RYINEEPELEDQPQSIKDELEALRFSLNNNSALLNIKLEAWDDAARSASAALEVGGVKDA 306

Query: 296 DNVKALFRQGQVSIIL 311
           D  KA +R+G  +I L
Sbjct: 307 DRAKAFYRRGLANIHL 322

PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides.

Gibberella zeae (strain PH-1 / ATCC MYA-4620 / FGSC 9075 / NRRL 31084) (taxid: 229533)

EC: 5

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 8

>sp|Q5U8Z7|PPID_AMAMU Peptidyl-prolyl cis-trans isomerase D OS=Amanita muscaria GN=Cyp40 PE=2 SV=1

 Score =  272 bits (695), Expect = 3e-72,   Method: Compositional matrix adjust.
 Identities = 138/247 (55%), Positives = 167/247 (67%), Gaps = 5/247 (2%)

Query: 3   RPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFH 62
           RP  F DI+IG +L GR+   +Y+D++PKTAENFRALCTGEKG+G  +G PL YKG  FH
Sbjct: 4   RPIVFFDIAIGGQLAGRVAFRLYSDLVPKTAENFRALCTGEKGLG-QSGKPLWYKGSAFH 62

Query: 63  RVIKGFMIQGGDISAGDGTGGESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFFI 122
           RVIKGFM QGGD +AG+GTGGESIYG KFEDE F + H R  +LSMANAGPNTNGSQFFI
Sbjct: 63  RVIKGFMCQGGDFTAGNGTGGESIYGEKFEDEGFPVHHSRPFLLSMANAGPNTNGSQFFI 122

Query: 123 TTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTITDCGEIPEGADDGI- 181
           T + T HLDGKHVVFG VIKG  VVR+IE+    + D P   V I DCG++   +DD   
Sbjct: 123 TVSATPHLDGKHVVFGEVIKGRSVVRTIENNPATNGDVPKEPVVIADCGQL--SSDDPFL 180

Query: 182 -SNFFNDGDSYPDWPADLDQTPNELSWWMNAVDSIKVFGNEHYKKQDYKMALRKYRKALR 240
                 DGD Y D+P D DQ        +    +I+   N  YK+ D   AL+KY K++R
Sbjct: 181 AERTSTDGDPYEDYPDDEDQELGNPETVLQIAKTIREVANRLYKQGDISGALQKYSKSIR 240

Query: 241 YLDICWE 247
           YLD+  E
Sbjct: 241 YLDVHQE 247

PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides.

Amanita muscaria (taxid: 41956)

EC: 5

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 8

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	312
225428707	361	PREDICTED: peptidyl-prolyl cis-trans iso	0.996	0.861	0.852	1e-161
255561673	361	peptidyl-prolyl cis-trans isomerase d, p	0.996	0.861	0.868	1e-161
356521481	361	PREDICTED: peptidyl-prolyl cis-trans iso	0.996	0.861	0.858	1e-160
224103535	370	predicted protein [Populus trichocarpa]	0.996	0.840	0.845	1e-160
449438434	361	PREDICTED: peptidyl-prolyl cis-trans iso	0.996	0.861	0.852	1e-160
449517543	361	PREDICTED: LOW QUALITY PROTEIN: peptidyl	0.996	0.861	0.848	1e-159
224123292	370	predicted protein [Populus trichocarpa]	0.996	0.840	0.842	1e-158
355329950	362	cyclophilin 40 [Nicotiana tabacum]	0.996	0.859	0.839	1e-158
363807868	361	uncharacterized protein LOC100804110 [Gl	0.996	0.861	0.845	1e-158
224081585	361	predicted protein [Populus trichocarpa]	0.996	0.861	0.842	1e-157

>gi|225428707|ref|XP_002284980.1| PREDICTED: peptidyl-prolyl cis-trans isomerase CYP40 [Vitis vinifera] gi|297741330|emb|CBI32461.3| unnamed protein product [Vitis vinifera]

 Score =  574 bits (1480), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 265/311 (85%), Positives = 290/311 (93%)

Query: 1   MARPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVR 60
           M RPRC+LDISIG ELEGR++VE+YND++P+TAENFRALCTGEKGIGPNTGVPLHYKGV 
Sbjct: 1   MGRPRCYLDISIGEELEGRVVVELYNDIVPRTAENFRALCTGEKGIGPNTGVPLHYKGVC 60

Query: 61  FHRVIKGFMIQGGDISAGDGTGGESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQF 120
           FHRVI+GFMIQGGDISAG+GTGGESIYGLKFEDENFELKHERKGMLSMAN+G NTNGSQF
Sbjct: 61  FHRVIRGFMIQGGDISAGNGTGGESIYGLKFEDENFELKHERKGMLSMANSGANTNGSQF 120

Query: 121 FITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTITDCGEIPEGADDG 180
           FITTTRTSHLDGKHVVFG+V+KGMGVVRSIEHV TGDNDCP  +V I DCGEIPEG D+G
Sbjct: 121 FITTTRTSHLDGKHVVFGKVVKGMGVVRSIEHVTTGDNDCPTVNVLIADCGEIPEGVDNG 180

Query: 181 ISNFFNDGDSYPDWPADLDQTPNELSWWMNAVDSIKVFGNEHYKKQDYKMALRKYRKALR 240
           +SNFF DGD+YPDWPADLD+ PN+LSWW NAVDS+K FGNEH+KKQDYKMALRKYRKALR
Sbjct: 181 VSNFFKDGDTYPDWPADLDENPNDLSWWTNAVDSVKAFGNEHFKKQDYKMALRKYRKALR 240

Query: 241 YLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKA 300
           YLDICWEKEGIDE KSS LRKTKS IFTNSSACKLKLGDLKGALLDT+FAMRD ++NVKA
Sbjct: 241 YLDICWEKEGIDEEKSSCLRKTKSLIFTNSSACKLKLGDLKGALLDTDFAMRDEENNVKA 300

Query: 301 LFRQGQVSIIL 311
           L+RQGQ  + L
Sbjct: 301 LYRQGQAYMAL 311

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255561673|ref|XP_002521846.1| peptidyl-prolyl cis-trans isomerase d, ppid, putative [Ricinus communis] gi|223538884|gb|EEF40482.1| peptidyl-prolyl cis-trans isomerase d, ppid, putative [Ricinus communis]

 Score =  573 bits (1478), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 270/311 (86%), Positives = 290/311 (93%)

Query: 1   MARPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVR 60
           M RPRCFLDISIG ELEGRI++E+YNDV+PKTAENFRALCTGEKGIGPNTGVPLHYKG  
Sbjct: 1   MGRPRCFLDISIGGELEGRIVIELYNDVVPKTAENFRALCTGEKGIGPNTGVPLHYKGCP 60

Query: 61  FHRVIKGFMIQGGDISAGDGTGGESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQF 120
           FHR+IKGFM+QGGDISAGDGTGGESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQF
Sbjct: 61  FHRIIKGFMVQGGDISAGDGTGGESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQF 120

Query: 121 FITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTITDCGEIPEGADDG 180
           FITTTRTSHLDGKHVVFG+V+KGMGVVRSIEHV TG+ D P  DV I DCGEIPEGADDG
Sbjct: 121 FITTTRTSHLDGKHVVFGKVVKGMGVVRSIEHVTTGEGDYPAVDVLIADCGEIPEGADDG 180

Query: 181 ISNFFNDGDSYPDWPADLDQTPNELSWWMNAVDSIKVFGNEHYKKQDYKMALRKYRKALR 240
           ISNFF DGD +PDWPADL  +PNELSWWM+AVDSIK FGNE YKK D+KMALRKYRKALR
Sbjct: 181 ISNFFKDGDIFPDWPADLSDSPNELSWWMDAVDSIKGFGNESYKKLDFKMALRKYRKALR 240

Query: 241 YLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKA 300
           YLDICWEK+GIDE KSSSLRKTKSQIFTNS+ACKLKLGDLKGALLDT+FAMR+GD+NVKA
Sbjct: 241 YLDICWEKDGIDEEKSSSLRKTKSQIFTNSAACKLKLGDLKGALLDTDFAMREGDNNVKA 300

Query: 301 LFRQGQVSIIL 311
           LFRQGQ  ++L
Sbjct: 301 LFRQGQAHMLL 311

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356521481|ref|XP_003529384.1| PREDICTED: peptidyl-prolyl cis-trans isomerase CYP40-like [Glycine max]

 Score =  570 bits (1470), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 267/311 (85%), Positives = 288/311 (92%)

Query: 1   MARPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVR 60
           M R RCFLDISIG ELEGRI+VE+Y+DV+PKTAENFRALCTGEKGIGPNTGVPLH+KG  
Sbjct: 1   MGRGRCFLDISIGQELEGRIVVELYDDVVPKTAENFRALCTGEKGIGPNTGVPLHFKGSC 60

Query: 61  FHRVIKGFMIQGGDISAGDGTGGESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQF 120
           FHRVIKGFMIQGGDISAGDGTGGESIYGLKFEDENFELKHERKGMLSMAN+GPNTNGSQF
Sbjct: 61  FHRVIKGFMIQGGDISAGDGTGGESIYGLKFEDENFELKHERKGMLSMANSGPNTNGSQF 120

Query: 121 FITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTITDCGEIPEGADDG 180
           FI+TTRTSHLDGKHVVFG+V+KGMGVVRS+EHV TGD+D P  DV + DCGEIPEG DDG
Sbjct: 121 FISTTRTSHLDGKHVVFGKVVKGMGVVRSVEHVATGDDDRPALDVKVVDCGEIPEGEDDG 180

Query: 181 ISNFFNDGDSYPDWPADLDQTPNELSWWMNAVDSIKVFGNEHYKKQDYKMALRKYRKALR 240
           ISNFF DGD+YPDWPADLD++PNEL WWM +VDSIK FGNE+Y+KQDYKMALRKYRKALR
Sbjct: 181 ISNFFKDGDTYPDWPADLDESPNELEWWMKSVDSIKAFGNEYYRKQDYKMALRKYRKALR 240

Query: 241 YLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKA 300
           YLDICWEKEGIDE  SSSLRKTKSQIFTNSSA KLKLGD+KGALLDTEFAMR+GDDN KA
Sbjct: 241 YLDICWEKEGIDEEISSSLRKTKSQIFTNSSASKLKLGDIKGALLDTEFAMREGDDNAKA 300

Query: 301 LFRQGQVSIIL 311
           LFRQGQ  + L
Sbjct: 301 LFRQGQAYMAL 311

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224103535|ref|XP_002313093.1| predicted protein [Populus trichocarpa] gi|222849501|gb|EEE87048.1| predicted protein [Populus trichocarpa]

 Score =  569 bits (1467), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 263/311 (84%), Positives = 288/311 (92%)

Query: 1   MARPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVR 60
           M R RCFLDISIG ELEGRI++E+YNDV+PKTAENFRALCTGEKG+GPNTGVPLHYKG  
Sbjct: 1   MRRSRCFLDISIGGELEGRIVIELYNDVVPKTAENFRALCTGEKGVGPNTGVPLHYKGCC 60

Query: 61  FHRVIKGFMIQGGDISAGDGTGGESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQF 120
           FHR IKGFM+QGGDISAGDGTGGESIYGLKFEDENFELKHERKGMLSMAN+GPNTNGSQF
Sbjct: 61  FHRAIKGFMVQGGDISAGDGTGGESIYGLKFEDENFELKHERKGMLSMANSGPNTNGSQF 120

Query: 121 FITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTITDCGEIPEGADDG 180
           FITTTRTSHLDGKHVVFG+V+KGMGVVRS+EHV TGD DCP +DV I DCGEIPE ADDG
Sbjct: 121 FITTTRTSHLDGKHVVFGKVVKGMGVVRSMEHVTTGDADCPASDVIIVDCGEIPEDADDG 180

Query: 181 ISNFFNDGDSYPDWPADLDQTPNELSWWMNAVDSIKVFGNEHYKKQDYKMALRKYRKALR 240
           I NFF DGD+YPDWPADL++ PNELSWWM+AVDSIK FGNEH+KKQDYKMAL+KYRKALR
Sbjct: 181 ICNFFKDGDAYPDWPADLNEIPNELSWWMSAVDSIKAFGNEHFKKQDYKMALKKYRKALR 240

Query: 241 YLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKA 300
           YLDICWEKEGIDE KSS+LRK KSQIFTNS+A KLKLGDLKGAL+DT+FA+RDG++N KA
Sbjct: 241 YLDICWEKEGIDEEKSSALRKAKSQIFTNSAASKLKLGDLKGALVDTDFAIRDGENNAKA 300

Query: 301 LFRQGQVSIIL 311
           LFRQGQ  + L
Sbjct: 301 LFRQGQAYMAL 311

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449438434|ref|XP_004136993.1| PREDICTED: peptidyl-prolyl cis-trans isomerase CYP40-like [Cucumis sativus]

 Score =  569 bits (1466), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 265/311 (85%), Positives = 292/311 (93%)

Query: 1   MARPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVR 60
           M R RCFLDISIG +LEGRI+VE+Y+DV+PKTAENFRALCTGEKGIGP+TGVPLH+KG  
Sbjct: 1   MGRIRCFLDISIGGDLEGRIVVELYDDVVPKTAENFRALCTGEKGIGPHTGVPLHFKGSC 60

Query: 61  FHRVIKGFMIQGGDISAGDGTGGESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQF 120
           FHRVIKGFM+QGGDISAGDGTGGESIYG KF+DENFE+KHERKGMLSMAN+GPN+NGSQF
Sbjct: 61  FHRVIKGFMVQGGDISAGDGTGGESIYGEKFDDENFEVKHERKGMLSMANSGPNSNGSQF 120

Query: 121 FITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTITDCGEIPEGADDG 180
           FITTTRT HLDGKHVVFG+V+KGMGVVRSIEHV TG+N CPIA+V I+DCGEIPEGADDG
Sbjct: 121 FITTTRTPHLDGKHVVFGKVLKGMGVVRSIEHVTTGENACPIAEVIISDCGEIPEGADDG 180

Query: 181 ISNFFNDGDSYPDWPADLDQTPNELSWWMNAVDSIKVFGNEHYKKQDYKMALRKYRKALR 240
           ISNFFNDGD++PDWP DL+Q+ ++L WW+ AVDS+KVFGNEHYKKQDYKMALRKYRKALR
Sbjct: 181 ISNFFNDGDTFPDWPTDLEQSSDDLEWWVKAVDSVKVFGNEHYKKQDYKMALRKYRKALR 240

Query: 241 YLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKA 300
           YLDICWEKEGIDE KSS LRKTKSQIFTNSSACKLKLGDLKGALLDT+FAMRDGDDNVKA
Sbjct: 241 YLDICWEKEGIDEEKSSYLRKTKSQIFTNSSACKLKLGDLKGALLDTDFAMRDGDDNVKA 300

Query: 301 LFRQGQVSIIL 311
           LFRQGQ  + L
Sbjct: 301 LFRQGQAHMAL 311

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449517543|ref|XP_004165805.1| PREDICTED: LOW QUALITY PROTEIN: peptidyl-prolyl cis-trans isomerase CYP40-like [Cucumis sativus]

 Score =  567 bits (1461), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 264/311 (84%), Positives = 291/311 (93%)

Query: 1   MARPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVR 60
           M R RCFLDISIG +LEGRI+VE+Y+DV+PKTAENFRALCTGEKGIGP+TGVPLH+KG  
Sbjct: 1   MGRIRCFLDISIGGDLEGRIVVELYDDVVPKTAENFRALCTGEKGIGPHTGVPLHFKGSC 60

Query: 61  FHRVIKGFMIQGGDISAGDGTGGESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQF 120
           FHRVIKGFM+QGGDISAGDGTGGESIYG KF+DENFE+KHER GMLSMAN+GPN+NGSQF
Sbjct: 61  FHRVIKGFMVQGGDISAGDGTGGESIYGEKFDDENFEVKHERXGMLSMANSGPNSNGSQF 120

Query: 121 FITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTITDCGEIPEGADDG 180
           FITTTRT HLDGKHVVFG+V+KGMGVVRSIEHV TG+N CPIA+V I+DCGEIPEGADDG
Sbjct: 121 FITTTRTPHLDGKHVVFGKVLKGMGVVRSIEHVTTGENACPIAEVIISDCGEIPEGADDG 180

Query: 181 ISNFFNDGDSYPDWPADLDQTPNELSWWMNAVDSIKVFGNEHYKKQDYKMALRKYRKALR 240
           ISNFFNDGD++PDWP DL+Q+ ++L WW+ AVDS+KVFGNEHYKKQDYKMALRKYRKALR
Sbjct: 181 ISNFFNDGDTFPDWPTDLEQSSDDLEWWVKAVDSVKVFGNEHYKKQDYKMALRKYRKALR 240

Query: 241 YLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKA 300
           YLDICWEKEGIDE KSS LRKTKSQIFTNSSACKLKLGDLKGALLDT+FAMRDGDDNVKA
Sbjct: 241 YLDICWEKEGIDEEKSSYLRKTKSQIFTNSSACKLKLGDLKGALLDTDFAMRDGDDNVKA 300

Query: 301 LFRQGQVSIIL 311
           LFRQGQ  + L
Sbjct: 301 LFRQGQAHMAL 311

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224123292|ref|XP_002330280.1| predicted protein [Populus trichocarpa] gi|222871315|gb|EEF08446.1| predicted protein [Populus trichocarpa]

 Score =  564 bits (1453), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 262/311 (84%), Positives = 285/311 (91%)

Query: 1   MARPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVR 60
           M RPRCFLDISIG ELEGRI+VE+YNDV+PKTAENFRALCTGEKGIGPNTGVPLHYKG R
Sbjct: 1   MGRPRCFLDISIGGELEGRIVVELYNDVVPKTAENFRALCTGEKGIGPNTGVPLHYKGCR 60

Query: 61  FHRVIKGFMIQGGDISAGDGTGGESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQF 120
           FHRVIKGFM+QGGDISAGDGTGGESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQF
Sbjct: 61  FHRVIKGFMVQGGDISAGDGTGGESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQF 120

Query: 121 FITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTITDCGEIPEGADDG 180
           FI+TTR SHLDGKHVVFG+ +KG+GVVRSIEHV TGD +CP +DV I DCGEIPEGADDG
Sbjct: 121 FISTTRASHLDGKHVVFGKAVKGIGVVRSIEHVTTGDAECPTSDVMIVDCGEIPEGADDG 180

Query: 181 ISNFFNDGDSYPDWPADLDQTPNELSWWMNAVDSIKVFGNEHYKKQDYKMALRKYRKALR 240
             NFF DGD+YPDWPADL ++P+ELSWWMNAVDSIK  GNEH+KKQDYKMALRKYRKALR
Sbjct: 181 TCNFFKDGDAYPDWPADLYESPSELSWWMNAVDSIKASGNEHFKKQDYKMALRKYRKALR 240

Query: 241 YLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKA 300
           YLDICWEKEGIDE KSS+LRKTKSQ FTNS+A +LKLGDLKGAL+DT+ A+RD ++N KA
Sbjct: 241 YLDICWEKEGIDEEKSSALRKTKSQTFTNSAASRLKLGDLKGALVDTDLAIRDWENNAKA 300

Query: 301 LFRQGQVSIIL 311
           LFRQGQ    L
Sbjct: 301 LFRQGQAYKAL 311

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|355329950|dbj|BAL14274.1| cyclophilin 40 [Nicotiana tabacum]

 Score =  563 bits (1451), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 261/311 (83%), Positives = 287/311 (92%)

Query: 1   MARPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVR 60
           M RPRC+LDISIG ELEGRI+VE+YNDV+PKTAENFRALCTGEKGIGPNTGVPLHYKGVR
Sbjct: 1   MGRPRCYLDISIGGELEGRIVVELYNDVVPKTAENFRALCTGEKGIGPNTGVPLHYKGVR 60

Query: 61  FHRVIKGFMIQGGDISAGDGTGGESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQF 120
           FHRVIK FM+QGGDISAGDGTGGESIYGLKFEDENFELKHERKGMLSMANAG NTNGSQF
Sbjct: 61  FHRVIKSFMVQGGDISAGDGTGGESIYGLKFEDENFELKHERKGMLSMANAGANTNGSQF 120

Query: 121 FITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTITDCGEIPEGADDG 180
           FITTTRTSHLDGKHVVFG+VIKGMGVVRS+EHV TGDND P+ DV+I DCGEIP+GADDG
Sbjct: 121 FITTTRTSHLDGKHVVFGKVIKGMGVVRSMEHVTTGDNDFPMVDVSIADCGEIPQGADDG 180

Query: 181 ISNFFNDGDSYPDWPADLDQTPNELSWWMNAVDSIKVFGNEHYKKQDYKMALRKYRKALR 240
           I+NFF DGD YPDWPADLD   +++SWW+ A+++IK FGNE++KKQDYKMALRKYRKALR
Sbjct: 181 IANFFKDGDLYPDWPADLDNNTDDISWWVTALEAIKAFGNENFKKQDYKMALRKYRKALR 240

Query: 241 YLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKA 300
           YLDICWEKE IDE +S+ LRK KSQIFTNSSACKLKLGDLKGALLD +FAMRDG++N KA
Sbjct: 241 YLDICWEKEEIDEDRSAYLRKMKSQIFTNSSACKLKLGDLKGALLDADFAMRDGENNAKA 300

Query: 301 LFRQGQVSIIL 311
           LFRQGQ  + L
Sbjct: 301 LFRQGQAHMAL 311

Source: Nicotiana tabacum

Species: Nicotiana tabacum

Genus: Nicotiana

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|363807868|ref|NP_001241932.1| uncharacterized protein LOC100804110 [Glycine max] gi|255644776|gb|ACU22890.1| unknown [Glycine max]

 Score =  562 bits (1448), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 263/311 (84%), Positives = 286/311 (91%)

Query: 1   MARPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVR 60
           M R RCFLDISIG ELEGRI+VE+Y+DV+PKTAENFRALCTGEKGIG NTGVPLH+KG  
Sbjct: 1   MGRGRCFLDISIGEELEGRIVVELYDDVVPKTAENFRALCTGEKGIGSNTGVPLHFKGSC 60

Query: 61  FHRVIKGFMIQGGDISAGDGTGGESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQF 120
           FHRVIKGFMIQGGDISAGDGTGGES+YGLKFEDENFELKHERKGMLSMAN+GP+TNGSQF
Sbjct: 61  FHRVIKGFMIQGGDISAGDGTGGESVYGLKFEDENFELKHERKGMLSMANSGPDTNGSQF 120

Query: 121 FITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTITDCGEIPEGADDG 180
           FI+TTRTSHLDGKHVVFG+V+KGMGVVRS+EHV TGDND P  DV I DCGEIPEG DDG
Sbjct: 121 FISTTRTSHLDGKHVVFGKVVKGMGVVRSVEHVATGDNDRPTLDVKIVDCGEIPEGEDDG 180

Query: 181 ISNFFNDGDSYPDWPADLDQTPNELSWWMNAVDSIKVFGNEHYKKQDYKMALRKYRKALR 240
           ISNFF DGD+YPDWPADLD++PNEL WWM +VDSIK FGN++Y+KQDYKMALRKYRKALR
Sbjct: 181 ISNFFKDGDTYPDWPADLDESPNELEWWMKSVDSIKAFGNDYYRKQDYKMALRKYRKALR 240

Query: 241 YLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKA 300
           YLDICWEKEGIDE  SS LRKTKSQIFTNSSA KLKLGD+KGALLDTEFAMR+GD+N KA
Sbjct: 241 YLDICWEKEGIDEEISSGLRKTKSQIFTNSSASKLKLGDIKGALLDTEFAMREGDNNAKA 300

Query: 301 LFRQGQVSIIL 311
           LFRQGQ  + L
Sbjct: 301 LFRQGQAYMAL 311

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224081585|ref|XP_002306460.1| predicted protein [Populus trichocarpa] gi|222855909|gb|EEE93456.1| predicted protein [Populus trichocarpa]

 Score =  558 bits (1439), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 262/311 (84%), Positives = 282/311 (90%)

Query: 1   MARPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVR 60
           MA+PRC+LDISIG ELEGRI+VE+Y DV+PKTAENFRALCTGEKGIGPNTGVPLHYKG R
Sbjct: 1   MAKPRCYLDISIGGELEGRIVVELYKDVVPKTAENFRALCTGEKGIGPNTGVPLHYKGGR 60

Query: 61  FHRVIKGFMIQGGDISAGDGTGGESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQF 120
           FHRV++GFMIQGGDISAGDGTGGESIYGLKFEDENFELKHERKGMLSMAN GP+TNGSQF
Sbjct: 61  FHRVVRGFMIQGGDISAGDGTGGESIYGLKFEDENFELKHERKGMLSMANMGPDTNGSQF 120

Query: 121 FITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTITDCGEIPEGADDG 180
           FITTTRTSHLDGKHVVFG+V KGMGVVRSIEHV+T   D P  +  I DCGEIPEG DDG
Sbjct: 121 FITTTRTSHLDGKHVVFGKVTKGMGVVRSIEHVVTEGGDSPSQETVIVDCGEIPEGEDDG 180

Query: 181 ISNFFNDGDSYPDWPADLDQTPNELSWWMNAVDSIKVFGNEHYKKQDYKMALRKYRKALR 240
           IS+FF DGD+YPDWPADLD  P+E+SWWM AVDSIK FGNE YKKQD KMALRKYRKALR
Sbjct: 181 ISDFFKDGDTYPDWPADLDMKPDEISWWMKAVDSIKAFGNEQYKKQDCKMALRKYRKALR 240

Query: 241 YLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKA 300
           YLD+CWEKE IDE KSSSLRKTKSQIFTNSSACKLKLGD+KGALLDT+FAMRDG+DN KA
Sbjct: 241 YLDVCWEKEDIDEEKSSSLRKTKSQIFTNSSACKLKLGDIKGALLDTDFAMRDGEDNAKA 300

Query: 301 LFRQGQVSIIL 311
            FRQGQ  + L
Sbjct: 301 FFRQGQAYMAL 311

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	312
TAIR|locus:2044596	361	SQN "SQUINT" [Arabidopsis thal	0.996	0.861	0.749	7.6e-128
ZFIN|ZDB-GENE-040625-34	371	ppid "peptidylprolyl isomerase	0.964	0.811	0.475	2e-72
RGD|1303174	370	Ppid "peptidylprolyl isomerase	0.961	0.810	0.485	9.9e-71
MGI|MGI:1914988	370	Ppid "peptidylprolyl isomerase	0.961	0.810	0.481	2.6e-70
UNIPROTKB|F1RTY6	370	PPID "Uncharacterized protein"	0.964	0.813	0.477	7e-70
UNIPROTKB|P26882	370	PPID "Peptidyl-prolyl cis-tran	0.964	0.813	0.464	1.8e-69
UNIPROTKB|Q08752	370	PPID "Peptidyl-prolyl cis-tran	0.964	0.813	0.470	6.3e-69
UNIPROTKB|E2QTC7	372	PPID "Uncharacterized protein"	0.958	0.803	0.470	5.6e-68
DICTYBASE|DDB_G0283663	354	ppiD "peptidylprolyl isomerase	0.929	0.819	0.490	3.1e-67
UNIPROTKB|E1BXG9	370	PPID "Uncharacterized protein"	0.958	0.808	0.460	9.4e-66

TAIR|locus:2044596 SQN "SQUINT" [Arabidopsis thaliana (taxid:3702)]

 Score = 1255 (446.8 bits), Expect = 7.6e-128, P = 7.6e-128
 Identities = 233/311 (74%), Positives = 255/311 (81%)

Query:     1 MARPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVR 60
             M R +CF+DISIG ELEGRI++E+Y+DV+PKTAENFR LCTGEKG+GPNTGVPLHYKG R
Sbjct:     1 MGRSKCFMDISIGGELEGRIVIELYDDVVPKTAENFRLLCTGEKGLGPNTGVPLHYKGNR 60

Query:    61 FHRVIKGFMIQXXXXXXXXXXXXESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQF 120
             FHRVIKGFMIQ            ESIYGLKF+DENFELKHERKGMLSMAN+GPNTNGSQF
Sbjct:    61 FHRVIKGFMIQGGDISANDGTGGESIYGLKFDDENFELKHERKGMLSMANSGPNTNGSQF 120

Query:   121 FITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTITDCGEIPEGADDG 180
             FITTTRTSHLDGKHVVFGRV KGMGVVRSIEHV   +  CP  DV I DCGEIPEGADDG
Sbjct:   121 FITTTRTSHLDGKHVVFGRVTKGMGVVRSIEHVSIEEQSCPSQDVVIHDCGEIPEGADDG 180

Query:   181 ISNFFNDGDSYPDWPADLDQTPNELSWWMNAVDSIKVFGNEHYKKQDYKMALRKYRKALR 240
             I +FF DGD YPDWP DL+++P ELSWWM  VD +K  GNEH+KKQDYKMALRKYRKALR
Sbjct:   181 ICDFFKDGDVYPDWPIDLNESPAELSWWMETVDFVKAHGNEHFKKQDYKMALRKYRKALR 240

Query:   241 YLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACXXXXXXXXXXXXXTEFAMRDGDDNVKA 300
             YLDICWEKEGIDE  S++LRKTKSQIFTNS+AC             TEFAMRD D+NVKA
Sbjct:   241 YLDICWEKEGIDEETSTALRKTKSQIFTNSAACKLKFGDAKGALLDTEFAMRDEDNNVKA 300

Query:   301 LFRQGQVSIIL 311
             LFRQGQ  + L
Sbjct:   301 LFRQGQAYMAL 311

GO:0003755 "peptidyl-prolyl cis-trans isomerase activity" evidence=IEA;ISS

GO:0005737 "cytoplasm" evidence=ISM;IDA

GO:0006457 "protein folding" evidence=IEA

GO:0010050 "vegetative phase change" evidence=IMP

GO:0010582 "floral meristem determinacy" evidence=IGI

GO:0005829 "cytosol" evidence=IDA

ZFIN|ZDB-GENE-040625-34 ppid "peptidylprolyl isomerase D" [Danio rerio (taxid:7955)]

 Score = 732 (262.7 bits), Expect = 2.0e-72, P = 2.0e-72
 Identities = 144/303 (47%), Positives = 189/303 (62%)

Query:     4 PRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHR 63
             PR F D+ IG E  GR++ E++ DV+PKTAENFRALCTGEKG+G +TG PLH+KG  FHR
Sbjct:    16 PRVFFDVEIGAERVGRVVFELFADVVPKTAENFRALCTGEKGVGKSTGKPLHFKGCPFHR 75

Query:    64 VIKGFMIQXXXXXXXXXXXXESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFFIT 123
             +IK FMIQ            ESIYG KFEDENF  KH+R+G+LSMANAGPNTNGSQFFIT
Sbjct:    76 IIKSFMIQGGDFSNQNGTGGESIYGDKFEDENFHYKHDREGLLSMANAGPNTNGSQFFIT 135

Query:   124 TTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTITDCGEIPEGADDGISN 183
             T  T HLDGKHVVFG+V+KGMGVV+ +E + T + D P+    I +CGE   G D  I+ 
Sbjct:   136 TVPTPHLDGKHVVFGQVLKGMGVVKMLEAMETKE-DNPVKPCVIAECGEHKAGDDWSIAL 194

Query:   184 FFNDGDSYPDWPADLDQTPNELSWWMNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLD 243
                 GD+YPD+P D +    ++   ++  + +K  GN  +K Q+++ A++KY KALRYL+
Sbjct:   195 NDGSGDAYPDFPEDSEVDFKDVDKVLSVAEDLKNIGNNFFKAQNWQSAIKKYSKALRYLE 254

Query:   244 ICWEKEGIDEGKSSSLRKTKSQIFTNSSACXXXXXXXXXXXXXTEFAMRDGDDNVKALFR 303
             +C      D+     L  T      N++AC              +  +     N KALFR
Sbjct:   255 MCGNIVD-DDSSQKKLEPTALSCILNTAACKLKLKLWQEAIESCDEVLELNQTNTKALFR 313

Query:   304 QGQ 306
             + Q
Sbjct:   314 RAQ 316

GO:0003755 "peptidyl-prolyl cis-trans isomerase activity" evidence=IEA

GO:0006457 "protein folding" evidence=IEA

GO:0016853 "isomerase activity" evidence=IEA

RGD|1303174 Ppid "peptidylprolyl isomerase D" [Rattus norvegicus (taxid:10116)]

 Score = 716 (257.1 bits), Expect = 9.9e-71, P = 9.9e-71
 Identities = 147/303 (48%), Positives = 187/303 (61%)

Query:     4 PRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHR 63
             PR F D+ IG E  GRI++E++ D++PKTAENFRALCTGEKG GP TG PLH+KG  FHR
Sbjct:    16 PRVFFDVDIGGERVGRIVLELFADIVPKTAENFRALCTGEKGTGPTTGKPLHFKGCPFHR 75

Query:    64 VIKGFMIQXXXXXXXXXXXXESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFFIT 123
             +IK FMIQ            ESIYG KFEDENF  KH+R+G+LSMANAGPNTNGSQFFIT
Sbjct:    76 IIKKFMIQGGDFSNQNGTGGESIYGEKFEDENFHYKHDREGLLSMANAGPNTNGSQFFIT 135

Query:   124 TTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTITDCGEIPEGADDGISN 183
             T  T HLDGKHVVFG+VIKG+GV R +E+V   + + P     I +CGE+ EG + GI  
Sbjct:   136 TVPTPHLDGKHVVFGQVIKGLGVARMLENVEV-NGEKPAKLCVIAECGELKEGDEWGIFP 194

Query:   184 FFNDGDSYPDWPADLDQTPNELSWWMNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLD 243
                 GDS+PD+P D D    ++   +   + +K  GN  +K Q+++MA++KY K LRYLD
Sbjct:   195 KDGSGDSHPDFPEDADIDLKDVDKILLISEDLKNIGNTFFKSQNWEMAIKKYAKVLRYLD 254

Query:   244 ICWEKEGIDEGKSSSLRKTKSQIFTNSSACXXXXXXXXXXXXXTEFAMRDGDDNVKALFR 303
                 K  I++   S L+        N  AC                A+     N KAL+R
Sbjct:   255 S--SKAVIEKADVSRLQPIALSCVLNIGACKLKMSNWQGAIDSCLEALEMDPSNTKALYR 312

Query:   304 QGQ 306
             + Q
Sbjct:   313 KAQ 315

GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=ISO;ISS

GO:0000413 "protein peptidyl-prolyl isomerization" evidence=ISO;IDA

GO:0003755 "peptidyl-prolyl cis-trans isomerase activity" evidence=ISO;IDA

GO:0005515 "protein binding" evidence=IPI

GO:0005634 "nucleus" evidence=ISO;ISS

GO:0005654 "nucleoplasm" evidence=IEA

GO:0005730 "nucleolus" evidence=ISO;ISS

GO:0005737 "cytoplasm" evidence=ISO;ISS

GO:0005739 "mitochondrion" evidence=IDA

GO:0006457 "protein folding" evidence=ISS

GO:0006461 "protein complex assembly" evidence=ISO;ISS

GO:0006915 "apoptotic process" evidence=IEA

GO:0006979 "response to oxidative stress" evidence=IMP

GO:0008134 "transcription factor binding" evidence=ISO;ISS

GO:0015031 "protein transport" evidence=IEA

GO:0019899 "enzyme binding" evidence=IPI

GO:0030331 "estrogen receptor binding" evidence=ISS

GO:0030544 "Hsp70 protein binding" evidence=ISS

GO:0031072 "heat shock protein binding" evidence=ISO

GO:0034389 "lipid particle organization" evidence=ISO;ISS

GO:0042277 "peptide binding" evidence=IEA

GO:0043065 "positive regulation of apoptotic process" evidence=ISO;ISS

GO:0043066 "negative regulation of apoptotic process" evidence=IMP

GO:0045070 "positive regulation of viral genome replication" evidence=ISO

GO:0045111 "intermediate filament cytoskeleton" evidence=ISO

GO:0050714 "positive regulation of protein secretion" evidence=ISO

GO:0051879 "Hsp90 protein binding" evidence=ISO;ISS

GO:0051881 "regulation of mitochondrial membrane potential" evidence=IMP

GO:0061077 "chaperone-mediated protein folding" evidence=ISO;ISS

GO:0071492 "cellular response to UV-A" evidence=ISO;ISS

MGI|MGI:1914988 Ppid "peptidylprolyl isomerase D (cyclophilin D)" [Mus musculus (taxid:10090)]

 Score = 712 (255.7 bits), Expect = 2.6e-70, P = 2.6e-70
 Identities = 146/303 (48%), Positives = 187/303 (61%)

Query:     4 PRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHR 63
             PR F D+ IG E  GRI++E++ D++PKTAENFRALCTGEKG G  TG PLH+KG  FHR
Sbjct:    16 PRVFFDVDIGGERVGRIVLELFADIVPKTAENFRALCTGEKGTGSTTGKPLHFKGCPFHR 75

Query:    64 VIKGFMIQXXXXXXXXXXXXESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFFIT 123
             +IK FMIQ            ESIYG KFEDENF  KH+R+G+LSMANAGPNTNGSQFFIT
Sbjct:    76 IIKKFMIQGGDFSNQNGTGGESIYGEKFEDENFHYKHDREGLLSMANAGPNTNGSQFFIT 135

Query:   124 TTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTITDCGEIPEGADDGISN 183
             T  T HLDGKHVVFG+VIKG+GV R++E+V   + + P     I +CGE+ EG D GI  
Sbjct:   136 TVPTPHLDGKHVVFGQVIKGLGVARTLENVEV-NGEKPAKLCVIAECGELKEGDDWGIFP 194

Query:   184 FFNDGDSYPDWPADLDQTPNELSWWMNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLD 243
                 GDS+PD+P D D    ++   +   + +K  GN  +K Q+++MA++KY K LRY+D
Sbjct:   195 KDGSGDSHPDFPEDADIDLKDVDKILLISEDLKNIGNTFFKSQNWEMAIKKYAKVLRYVD 254

Query:   244 ICWEKEGIDEGKSSSLRKTKSQIFTNSSACXXXXXXXXXXXXXTEFAMRDGDDNVKALFR 303
                 K  I++   S L+        N  AC                A+     N KAL+R
Sbjct:   255 S--SKAVIEKADRSRLQPIALSCVLNIGACKLKMSNWQGAIDSCLEALEMDPSNTKALYR 312

Query:   304 QGQ 306
             + Q
Sbjct:   313 KAQ 315

GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=ISO

GO:0000413 "protein peptidyl-prolyl isomerization" evidence=ISO

GO:0003755 "peptidyl-prolyl cis-trans isomerase activity" evidence=ISO;ISS

GO:0005515 "protein binding" evidence=IPI

GO:0005528 "FK506 binding" evidence=TAS

GO:0005634 "nucleus" evidence=ISO

GO:0005730 "nucleolus" evidence=ISO

GO:0005737 "cytoplasm" evidence=ISO

GO:0006457 "protein folding" evidence=IEA

GO:0006461 "protein complex assembly" evidence=ISO

GO:0008134 "transcription factor binding" evidence=ISO

GO:0016853 "isomerase activity" evidence=IEA

GO:0031072 "heat shock protein binding" evidence=ISO

GO:0034389 "lipid particle organization" evidence=ISO

GO:0042277 "peptide binding" evidence=IEA

GO:0043065 "positive regulation of apoptotic process" evidence=ISO

GO:0045070 "positive regulation of viral genome replication" evidence=ISO

GO:0050714 "positive regulation of protein secretion" evidence=ISO

GO:0051879 "Hsp90 protein binding" evidence=ISO

GO:0061077 "chaperone-mediated protein folding" evidence=ISO

GO:0071492 "cellular response to UV-A" evidence=ISO

UNIPROTKB|F1RTY6 PPID "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 708 (254.3 bits), Expect = 7.0e-70, P = 7.0e-70
 Identities = 146/306 (47%), Positives = 186/306 (60%)

Query:     2 ARPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRF 61
             + PR F D+ IG E  GRI++E++ D++PKTAENFRALCTGEKGIGP TG PLH+KG  F
Sbjct:    14 SNPRVFFDVDIGGERVGRIVLELFADIVPKTAENFRALCTGEKGIGPTTGKPLHFKGCPF 73

Query:    62 HRVIKGFMIQXXXXXXXXXXXXESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFF 121
             HR+IK FMIQ            ESIYG KFEDENF  KH+++G+LSMANAG NTNGSQFF
Sbjct:    74 HRIIKKFMIQGGDFSNQNGTGGESIYGEKFEDENFHYKHDKEGLLSMANAGCNTNGSQFF 133

Query:   122 ITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHV-MTGDNDCPIADVTITDCGEIPEGADDG 180
             ITT  T HLDGKHVVFG+VIKGMGV R +E+V + G+    +    I +CGE+ EG D G
Sbjct:   134 ITTVPTPHLDGKHVVFGQVIKGMGVARILENVEVKGEKPAKLC--VIAECGELKEGDDWG 191

Query:   181 ISNFFNDGDSYPDWPADLDQTPNELSWWMNAVDSIKVFGNEHYKKQDYKMALRKYRKALR 240
             I      GDS+PD+P D D    ++   +   + +K  GN  +K Q ++MA++KY K LR
Sbjct:   192 IFPKDGSGDSHPDFPEDADIDLKDIDKILLITEDLKNIGNTFFKSQKWEMAIKKYTKVLR 251

Query:   241 YLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACXXXXXXXXXXXXXTEFAMRDGDDNVKA 300
             Y+D    K   +E     L+        N  AC                A+     N KA
Sbjct:   252 YVD--GAKAVSEEADGLKLQPVALSCMLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKA 309

Query:   301 LFRQGQ 306
             L+R+ Q
Sbjct:   310 LYRRAQ 315

GO:0045111 "intermediate filament cytoskeleton" evidence=IEA

GO:0031072 "heat shock protein binding" evidence=IEA

GO:0006457 "protein folding" evidence=IEA

GO:0003755 "peptidyl-prolyl cis-trans isomerase activity" evidence=IEA

UNIPROTKB|P26882 PPID "Peptidyl-prolyl cis-trans isomerase D" [Bos taurus (taxid:9913)]

 Score = 704 (252.9 bits), Expect = 1.8e-69, P = 1.8e-69
 Identities = 142/306 (46%), Positives = 188/306 (61%)

Query:     2 ARPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRF 61
             + PR F D+ IG E  GRI++E++ D++PKTAENFRALCTGEKGIGP TG PLH+KG  F
Sbjct:    14 SNPRVFFDVDIGGERVGRIVLELFADIVPKTAENFRALCTGEKGIGPTTGKPLHFKGCPF 73

Query:    62 HRVIKGFMIQXXXXXXXXXXXXESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFF 121
             HR+IK FMIQ            ESIYG KFEDENF  KH+++G+LSMANAG NTNGSQFF
Sbjct:    74 HRIIKKFMIQGGDFSNQNGTGGESIYGEKFEDENFHYKHDKEGLLSMANAGSNTNGSQFF 133

Query:   122 ITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHV-MTGDNDCPIADVTITDCGEIPEGADDG 180
             ITT  T HLDGKHVVFG+VIKGMGV + +E+V + G+    +    I +CGE+ EG D G
Sbjct:   134 ITTVPTPHLDGKHVVFGQVIKGMGVAKILENVEVKGEKPAKLC--VIAECGELKEGDDWG 191

Query:   181 ISNFFNDGDSYPDWPADLDQTPNELSWWMNAVDSIKVFGNEHYKKQDYKMALRKYRKALR 240
             I      GDS+PD+P D D    ++   +   + +K  GN  +K Q+++MA++KY K LR
Sbjct:   192 IFPKDGSGDSHPDFPEDADVDLKDVDKILLISEDLKNIGNTFFKSQNWEMAIKKYTKVLR 251

Query:   241 YLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACXXXXXXXXXXXXXTEFAMRDGDDNVKA 300
             Y++    +   ++   + L+        N  AC                A+     N KA
Sbjct:   252 YVE--GSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKA 309

Query:   301 LFRQGQ 306
             L+R+ Q
Sbjct:   310 LYRRAQ 315

GO:0000413 "protein peptidyl-prolyl isomerization" evidence=ISS

GO:0034389 "lipid particle organization" evidence=ISS

GO:0071492 "cellular response to UV-A" evidence=ISS

GO:0043065 "positive regulation of apoptotic process" evidence=ISS

GO:0006461 "protein complex assembly" evidence=ISS

GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=ISS

GO:0051879 "Hsp90 protein binding" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISS

GO:0005730 "nucleolus" evidence=ISS

GO:0005634 "nucleus" evidence=ISS

GO:0003755 "peptidyl-prolyl cis-trans isomerase activity" evidence=ISS

GO:0061077 "chaperone-mediated protein folding" evidence=ISS

GO:0008134 "transcription factor binding" evidence=ISS

GO:0006457 "protein folding" evidence=IDA

GO:0030544 "Hsp70 protein binding" evidence=IDA

GO:0030331 "estrogen receptor binding" evidence=IDA

GO:0005654 "nucleoplasm" evidence=IEA

GO:0045111 "intermediate filament cytoskeleton" evidence=IEA

GO:0042277 "peptide binding" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0006915 "apoptotic process" evidence=IEA

UNIPROTKB|Q08752 PPID "Peptidyl-prolyl cis-trans isomerase D" [Homo sapiens (taxid:9606)]

 Score = 699 (251.1 bits), Expect = 6.3e-69, P = 6.3e-69
 Identities = 144/306 (47%), Positives = 187/306 (61%)

Query:     2 ARPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRF 61
             + PR F D+ IG E  GRI++E++ D++PKTAENFRALCTGEKGIG  TG PLH+KG  F
Sbjct:    14 SNPRVFFDVDIGGERVGRIVLELFADIVPKTAENFRALCTGEKGIGHTTGKPLHFKGCPF 73

Query:    62 HRVIKGFMIQXXXXXXXXXXXXESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFF 121
             HR+IK FMIQ            ESIYG KFEDENF  KH+R+G+LSMANAG NTNGSQFF
Sbjct:    74 HRIIKKFMIQGGDFSNQNGTGGESIYGEKFEDENFHYKHDREGLLSMANAGRNTNGSQFF 133

Query:   122 ITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHV-MTGDNDCPIADVTITDCGEIPEGADDG 180
             ITT  T HLDGKHVVFG+VIKG+GV R +E+V + G+    +    I +CGE+ EG D G
Sbjct:   134 ITTVPTPHLDGKHVVFGQVIKGIGVARILENVEVKGEKPAKLC--VIAECGELKEGDDGG 191

Query:   181 ISNFFNDGDSYPDWPADLDQTPNELSWWMNAVDSIKVFGNEHYKKQDYKMALRKYRKALR 240
             I      GDS+PD+P D D    ++   +   + +K  GN  +K Q+++MA++KY + LR
Sbjct:   192 IFPKDGSGDSHPDFPEDADIDLKDVDKILLITEDLKNIGNTFFKSQNWEMAIKKYAEVLR 251

Query:   241 YLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACXXXXXXXXXXXXXTEFAMRDGDDNVKA 300
             Y+D    K  I+    + L+        N  AC                A+     N KA
Sbjct:   252 YVDS--SKAVIETADRAKLQPIALSCVLNIGACKLKMSNWQGAIDSCLEALELDPSNTKA 309

Query:   301 LFRQGQ 306
             L+R+ Q
Sbjct:   310 LYRRAQ 315

GO:0006915 "apoptotic process" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0005654 "nucleoplasm" evidence=IEA

GO:0016018 "cyclosporin A binding" evidence=TAS

GO:0031072 "heat shock protein binding" evidence=IPI

GO:0030331 "estrogen receptor binding" evidence=ISS

GO:0030544 "Hsp70 protein binding" evidence=ISS

GO:0006457 "protein folding" evidence=ISS

GO:0008134 "transcription factor binding" evidence=IDA

GO:0061077 "chaperone-mediated protein folding" evidence=IDA

GO:0003755 "peptidyl-prolyl cis-trans isomerase activity" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0005634 "nucleus" evidence=IDA

GO:0005730 "nucleolus" evidence=IDA

GO:0051879 "Hsp90 protein binding" evidence=IDA

GO:0006461 "protein complex assembly" evidence=IDA

GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=IMP

GO:0045070 "positive regulation of viral genome replication" evidence=IMP

GO:0019076 "viral release from host cell" evidence=TAS

GO:0050714 "positive regulation of protein secretion" evidence=IMP

GO:0043065 "positive regulation of apoptotic process" evidence=IMP

GO:0071492 "cellular response to UV-A" evidence=IMP

GO:0034389 "lipid particle organization" evidence=IMP

GO:0005515 "protein binding" evidence=IPI

GO:0045111 "intermediate filament cytoskeleton" evidence=IDA

GO:0000413 "protein peptidyl-prolyl isomerization" evidence=IDA

UNIPROTKB|E2QTC7 PPID "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 690 (248.0 bits), Expect = 5.6e-68, P = 5.6e-68
 Identities = 143/304 (47%), Positives = 187/304 (61%)

Query:     4 PRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHR 63
             PR F D++I  E  GRI++E++ D++PKTAENFRALCTGEKGIGP TG PLH+KG  FHR
Sbjct:    16 PRVFFDVAIAGERVGRIVLELFADIVPKTAENFRALCTGEKGIGPTTGKPLHFKGCPFHR 75

Query:    64 VIKGFMIQXXXXXXXXXXXXESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFFIT 123
             +IK FMIQ            ESIYG KFEDENF  KH+++G+LSMANAG NTNGSQFFIT
Sbjct:    76 IIKKFMIQGGDFSNQNGTGGESIYGEKFEDENFYYKHDQEGLLSMANAGCNTNGSQFFIT 135

Query:   124 TTRTSHLDGKHVVFGRVIKGMGVVRSIEHV-MTGDNDCPIADVTITDCGEIPEGADDGIS 182
             T  T HLDGKHVVFG+VIKGMGV R +E+V + G+   P     I +CGE+ EG D GI 
Sbjct:   136 TVPTPHLDGKHVVFGQVIKGMGVARILENVEVKGEK--PTKLCVIAECGELKEGDDWGIF 193

Query:   183 NFFNDGDSYPDWPADLDQTPNELSWWMNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYL 242
                  GD++PD+P D D    +++  +   + +K  GN  +K Q+++MA++KY K LRY+
Sbjct:   194 PKDGSGDNHPDFPEDADIDLKDVNKILLITEDLKNIGNTFFKSQNWEMAIKKYTKVLRYV 253

Query:   243 DICWEKEGIDEGKSSSLRKTKSQIFTNSSACXXXXXXXXXXXXXTEFAMRDGDDNVKALF 302
             +    K   ++     L+        N  AC                A+     N KAL+
Sbjct:   254 ES--SKAVAEQADRLKLQPMALSCVLNIGACKLKMSNWQGAVDSCLEALEIDPSNTKALY 311

Query:   303 RQGQ 306
             R+ Q
Sbjct:   312 RRAQ 315

GO:0045111 "intermediate filament cytoskeleton" evidence=IEA

GO:0031072 "heat shock protein binding" evidence=IEA

GO:0006457 "protein folding" evidence=IEA

GO:0003755 "peptidyl-prolyl cis-trans isomerase activity" evidence=IEA

DICTYBASE|DDB_G0283663 ppiD "peptidylprolyl isomerase" [Dictyostelium discoideum (taxid:44689)]

 Score = 683 (245.5 bits), Expect = 3.1e-67, P = 3.1e-67
 Identities = 148/302 (49%), Positives = 183/302 (60%)

Query:     5 RCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRV 64
             R + DI IG    GRI++E++ D  PKTAENFRALCTGEKGIG N G PL YKG  FHRV
Sbjct:     7 RVYFDIEIGGNKVGRIVMELFFDKTPKTAENFRALCTGEKGIGKN-GKPLSYKGSGFHRV 65

Query:    65 IKGFMIQXXXXXXXXXXXXESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFFITT 124
             IK FMIQ            ESIYG KF+DENF  KH + G+LSMAN+GP TNGSQFFITT
Sbjct:    66 IKQFMIQGGDFTAGNGTGGESIYGEKFDDENFIAKHTKAGLLSMANSGPGTNGSQFFITT 125

Query:   125 TRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTITDCGEIPEGADDGISNF 184
               T HLD KHVVFG+VIKGM VVR IE   TG ND PI D  I DCGE+ EG DDG+   
Sbjct:   126 ISTPHLDNKHVVFGKVIKGMSVVREIESQPTGANDKPIKDCIIMDCGELKEGEDDGVPEK 185

Query:   185 FNDGDSYPDWPADLDQTPNELSWWMNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDI 244
               D D + D+P D +   NE +  +   ++IK  GN+++K+     A+ KY KALRYLD 
Sbjct:   186 TGD-DKWEDYPQDDNVEGNEAN--LKVGEAIKNIGNDYFKQGKSLEAIAKYNKALRYLDC 242

Query:   245 CWEKEGIDEGKSSSLRKTKSQIFTNSSACXXXXXXXXXXXXXTEFAMRDGDDNVKALFRQ 304
             C     ID      L+  ++  + N S C              + A+    +++KALFR+
Sbjct:   243 C---SNID-----GLKNVQTICYNNMSQCYLKEKKGSNALVAAKKALELSPNDIKALFRK 294

Query:   305 GQ 306
              +
Sbjct:   295 AK 296

GO:0006457 "protein folding" evidence=IEA

GO:0003755 "peptidyl-prolyl cis-trans isomerase activity" evidence=IEA

GO:0000413 "protein peptidyl-prolyl isomerization" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

GO:0016853 "isomerase activity" evidence=IEA

UNIPROTKB|E1BXG9 PPID "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 669 (240.6 bits), Expect = 9.4e-66, P = 9.4e-66
 Identities = 140/304 (46%), Positives = 179/304 (58%)

Query:     4 PRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHR 63
             PR F D+ IG E  GRI+ E++ D++PKTAENFRALCTGEKG G  TG PLHYKG  FHR
Sbjct:    16 PRAFFDVDIGGERVGRIVFELFADIVPKTAENFRALCTGEKGTGATTGKPLHYKGCPFHR 75

Query:    64 VIKGFMIQXXXXXXXXXXXXESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFFIT 123
             +IK FM+Q            ESIYG KFEDENF  KH++ G+LSMANAGP TNGSQFFIT
Sbjct:    76 IIKQFMVQGGDFSNQNGTGGESIYGEKFEDENFHYKHDKPGLLSMANAGPGTNGSQFFIT 135

Query:   124 TTRTSHLDGKHVVFGRVIKGMGVVRSIEHV-MTGDNDCPIADVTITDCGEIPEGADDGIS 182
             T  TSHLDGKHVVFG+VIKGMGVV+ +E+V + G+N   +    I +CGE+ EG D GI 
Sbjct:   136 TVPTSHLDGKHVVFGQVIKGMGVVKILENVEVNGENPAKLC--VIAECGELKEGDDWGIV 193

Query:   183 NFFNDGDSYPDWPADLDQTPNELSWWMNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYL 242
                  GD+YPD+P D D    ++   +   + IK  GN  +  +D + A +     L Y+
Sbjct:   194 PQDGSGDTYPDFPEDSDIDLKDVLKGVAIAEDIKNIGNILFSTRDAQQADKSIASCLMYV 253

Query:   243 DICWEKEGIDEGKSSSLRKTKSQIFTNSSACXXXXXXXXXXXXXTEFAMRDGDDNVKALF 302
             +    +   +EG    L+        N  AC                A++    N KAL+
Sbjct:   254 EA--SETVAEEGDKPKLKTVGLSCVLNIGACKLKLSDWQGAIESCSEALQIDPANTKALY 311

Query:   303 RQGQ 306
             R+ Q
Sbjct:   312 RRAQ 315

GO:0003755 "peptidyl-prolyl cis-trans isomerase activity" evidence=IEA

GO:0006457 "protein folding" evidence=IEA

GO:0031072 "heat shock protein binding" evidence=IEA

GO:0045111 "intermediate filament cytoskeleton" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9C566	CYP40_ARATH	5, ., 2, ., 1, ., 8	0.8199	0.9967	0.8614	yes	no
Q6BXZ7	PPID_DEBHA	5, ., 2, ., 1, ., 8	0.4668	0.9551	0.8054	yes	no
Q6CBP4	PPID_YARLI	5, ., 2, ., 1, ., 8	0.4598	0.9711	0.8256	yes	no
Q4HXF6	PPID_GIBZE	5, ., 2, ., 1, ., 8	0.4936	0.9871	0.8279	yes	no
P26882	PPID_BOVIN	5, ., 2, ., 1, ., 8	0.5114	0.9679	0.8162	yes	no
Q11004	PPID_SCHPO	5, ., 2, ., 1, ., 8	0.5083	0.7275	0.6376	yes	no
Q9CR16	PPID_MOUSE	5, ., 2, ., 1, ., 8	0.5247	0.9615	0.8108	yes	no
Q2U0E0	PPID_ASPOR	5, ., 2, ., 1, ., 8	0.5089	0.8717	0.7331	yes	no
Q6CL78	PPID_KLULA	5, ., 2, ., 1, ., 8	0.4376	0.9679	0.8118	yes	no
Q6DGG0	PPID_RAT	5, ., 2, ., 1, ., 8	0.5280	0.9615	0.8108	yes	no
Q5B4E7	PPID_EMENI	5, ., 2, ., 1, ., 8	0.5403	0.8782	0.7365	yes	no
P0CP80	PPID_CRYNJ	5, ., 2, ., 1, ., 8	0.4242	0.9743	0.8106	yes	no
P0C1I1	PPID_RHIO9	5, ., 2, ., 1, ., 8	0.5047	0.9679	0.8296	N/A	no
Q08752	PPID_HUMAN	5, ., 2, ., 1, ., 8	0.5147	0.9679	0.8162	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	5.2.1	0.983
4th Layer	5.2.1.8	0.979

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00036534001 RecName- Full=Peptidyl-prolyl cis-trans isomerase; EC=5.2.1.8; (361 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	312
cd01926	164	cd01926, cyclophilin_ABH_like, cyclophilin_ABH_lik	1e-99
PTZ00060	183	PTZ00060, PTZ00060, cyclophilin; Provisional	1e-81
PLN03149	186	PLN03149, PLN03149, peptidyl-prolyl isomerase H (c	2e-71
cd00317	146	cd00317, cyclophilin, cyclophilin: cyclophilin-typ	5e-64
pfam00160	144	pfam00160, Pro_isomerase, Cyclophilin type peptidy	5e-59
COG0652	158	COG0652, PpiB, Peptidyl-prolyl cis-trans isomerase	2e-57
cd01927	148	cd01927, cyclophilin_WD40, cyclophilin_WD40: cyclo	4e-56
cd01928	153	cd01928, Cyclophilin_PPIL3_like, Cyclophilin_PPIL3	2e-52
cd01923	159	cd01923, cyclophilin_RING, cyclophilin_RING: cyclo	3e-49
cd01922	146	cd01922, cyclophilin_SpCYP2_like, cyclophilin_SpCY	4e-48
PTZ00221	249	PTZ00221, PTZ00221, cyclophilin; Provisional	3e-38
cd01925	171	cd01925, cyclophilin_CeCYP16-like, cyclophilin_CeC	1e-35
cd01921	166	cd01921, cyclophilin_RRM, cyclophilin_RRM: cycloph	7e-28
cd01920	155	cd01920, cyclophilin_EcCYP_like, cyclophilin_EcCYP	5e-22
PRK10903	190	PRK10903, PRK10903, peptidyl-prolyl cis-trans isom	7e-15
PRK10791	164	PRK10791, PRK10791, peptidyl-prolyl cis-trans isom	8e-15
cd01924	176	cd01924, cyclophilin_TLP40_like, cyclophilin_TLP40	1e-10
cd00189	100	cd00189, TPR, Tetratricopeptide repeat domain; typ	0.002

>gnl|CDD|238907 cd01926, cyclophilin_ABH_like, cyclophilin_ABH_like: Cyclophilin A, B and H-like cyclophilin-type peptidylprolyl cis- trans isomerase (PPIase) domain

 Score =  289 bits (742), Expect = 1e-99
 Identities = 111/168 (66%), Positives = 130/168 (77%), Gaps = 4/168 (2%)

Query: 4   PRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHR 63
           P+ F DI+IG E  GRI++E++ DV+PKTAENFRALCTGEKG G   G P  YKG  FHR
Sbjct: 1   PKVFFDITIGGEPAGRIVMELFADVVPKTAENFRALCTGEKGKG---GKPFGYKGSTFHR 57

Query: 64  VIKGFMIQGGDISAGDGTGGESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFFIT 123
           VI  FMIQGGD + G+GTGG+SIYG KF DENF+LKH   G+LSMANAGPNTNGSQFFIT
Sbjct: 58  VIPDFMIQGGDFTRGNGTGGKSIYGEKFPDENFKLKHTGPGLLSMANAGPNTNGSQFFIT 117

Query: 124 TTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTITDCG 171
           T +T  LDGKHVVFG+V++GM VV+ IE+V +G N  P   V I DCG
Sbjct: 118 TVKTPWLDGKHVVFGKVVEGMDVVKKIENVGSG-NGKPKKKVVIADCG 164

This family represents the archetypal cystolic cyclophilin similar to human cyclophilins A, B and H. PPIase is an enzyme which accelerates protein folding by catalyzing the cis-trans isomerization of the peptide bonds preceding proline residues. These enzymes have been implicated in protein folding processes which depend on catalytic /chaperone-like activities. As cyclophilins, Human hCyP-A, human cyclophilin-B (hCyP-19), S. cerevisiae Cpr1 and C. elegans Cyp-3, are inhibited by the immunosuppressive drug cyclopsporin A (CsA). CsA binds to the PPIase active site. Cyp-3. S. cerevisiae Cpr1 interacts with the Rpd3 - Sin3 complex and in addition is a component of the Set3 complex. S. cerevisiae Cpr1 has also been shown to have a role in Zpr1p nuclear transport. Human cyclophilin H associates with the [U4/U6.U5] tri-snRNP particles of the splicesome. Length = 164

>gnl|CDD|240249 PTZ00060, PTZ00060, cyclophilin; Provisional

 Score =  244 bits (625), Expect = 1e-81
 Identities = 106/173 (61%), Positives = 126/173 (72%), Gaps = 3/173 (1%)

Query: 1   MARPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVR 60
             RP+ F DISI     GRI+ E+++DV PKTAENFRALC G+K      G  LHYKG  
Sbjct: 13  SKRPKVFFDISIDNAPAGRIVFELFSDVTPKTAENFRALCIGDKVGSS--GKNLHYKGSI 70

Query: 61  FHRVIKGFMIQGGDISAGDGTGGESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQF 120
           FHR+I  FM QGGDI+  +GTGGESIYG KF DENF+LKH++ G+LSMANAGPNTNGSQF
Sbjct: 71  FHRIIPQFMCQGGDITNHNGTGGESIYGRKFTDENFKLKHDQPGLLSMANAGPNTNGSQF 130

Query: 121 FITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTITDCGEI 173
           FITT     LDGKHVVFG+VI+GM VVR++E   T  +  P   V +TDCGE+
Sbjct: 131 FITTVPCPWLDGKHVVFGKVIEGMEVVRAMEKEGT-QSGYPKKPVVVTDCGEL 182

Length = 183

>gnl|CDD|178694 PLN03149, PLN03149, peptidyl-prolyl isomerase H (cyclophilin H); Provisional

 Score =  218 bits (558), Expect = 2e-71
 Identities = 100/171 (58%), Positives = 118/171 (69%), Gaps = 4/171 (2%)

Query: 4   PRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHR 63
           P  F D++IG    GRI +E++ D+ PKTAENFR  CTGE       G+P  YKG +FHR
Sbjct: 19  PVVFFDVTIGGIPAGRIKMELFADIAPKTAENFRQFCTGEF---RKAGLPQGYKGCQFHR 75

Query: 64  VIKGFMIQGGDISAGDGTGGESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFFIT 123
           VIK FMIQGGD   GDGTG  SIYG KFEDENF  KH   G+LSMAN+GPNTNG QFFIT
Sbjct: 76  VIKDFMIQGGDFLKGDGTGCVSIYGSKFEDENFIAKHTGPGLLSMANSGPNTNGCQFFIT 135

Query: 124 TTRTSHLDGKHVVFGRVI-KGMGVVRSIEHVMTGDNDCPIADVTITDCGEI 173
             +   LD KHVVFGRV+  G+ VVR IE+V TG N+ P     I++CGE+
Sbjct: 136 CAKCDWLDNKHVVFGRVLGDGLLVVRKIENVATGPNNRPKLACVISECGEM 186

Length = 186

>gnl|CDD|238194 cd00317, cyclophilin, cyclophilin: cyclophilin-type peptidylprolyl cis- trans isomerases

 Score =  198 bits (505), Expect = 5e-64
 Identities = 90/164 (54%), Positives = 102/164 (62%), Gaps = 19/164 (11%)

Query: 7   FLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRVIK 66
            LD + G     RI++E+Y D  PKT ENF +L  G             Y G  FHRVI 
Sbjct: 1   TLDTTKG-----RIVIELYGDEAPKTVENFLSLARGG-----------FYDGTTFHRVIP 44

Query: 67  GFMIQGGDISAGDGTGGESIYGLKFEDENFELK-HERKGMLSMANAGPNTNGSQFFITTT 125
           GFMIQGGD +   G G  S  G KF DENF LK H R+G LSMANAGPNTNGSQFFITT 
Sbjct: 45  GFMIQGGDPTGTGGGG--SGPGYKFPDENFPLKYHHRRGTLSMANAGPNTNGSQFFITTA 102

Query: 126 RTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTITD 169
            T HLDGKH VFG+V++GM VV  IE   T +N  PI  VTI+D
Sbjct: 103 PTPHLDGKHTVFGKVVEGMDVVDKIERGDTDENGRPIKPVTISD 146

This family contains eukaryotic, bacterial and archeal proteins which exhibit a peptidylprolyl cis- trans isomerases activity (PPIase, Rotamase) and in addition bind the immunosuppressive drug cyclosporin (CsA). Immunosuppression in vertebrates is believed to be the result of the cyclophilin A-cyclosporin protein drug complex binding to and inhibiting the protein-phosphatase calcineurin. PPIase is an enzyme which accelerates protein folding by catalyzing the cis-trans isomerization of the peptide bonds preceding proline residues. Cyclophilins are a diverse family in terms of function and have been implicated in protein folding processes which depend on catalytic /chaperone-like activities. This group contains human cyclophilin 40, a co-chaperone of the hsp90 chaperone system; human cyclophilin A, a chaperone in the HIV-1 infectious process and; human cyclophilin H, a component of the U4/U6 snRNP, whose isomerization or chaperoning activities may play a role in RNA splicing. . Length = 146

>gnl|CDD|215759 pfam00160, Pro_isomerase, Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD

 Score =  185 bits (472), Expect = 5e-59
 Identities = 78/164 (47%), Positives = 94/164 (57%), Gaps = 20/164 (12%)

Query: 7   FLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRVIK 66
           FLDI+      GRI++E++ D  PKT ENF +LC  +KG          Y G  FHRVI 
Sbjct: 1   FLDITTN---LGRIVIELFGDEAPKTVENFLSLC--KKG---------FYDGTIFHRVIP 46

Query: 67  GFMIQGGDISAGDGTGGESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFFITTTR 126
           GFMIQGGD +     G  SI      DE       ++G LSMA +GPN+ GSQFFIT   
Sbjct: 47  GFMIQGGDPTGPGTGGKRSI-----PDEFVSKLKHKRGTLSMARSGPNSAGSQFFITLGD 101

Query: 127 TSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTITDC 170
             HLDG + VFGRV++GM VV  IE V   D D P+ DV IT C
Sbjct: 102 APHLDGGYTVFGRVVEGMDVVEKIEKV-ETDGDRPLKDVKITSC 144

The peptidyl-prolyl cis-trans isomerases, also known as cyclophilins, share this domain of about 109 amino acids. Cyclophilins have been found in all organisms studied so far and catalyze peptidyl-prolyl isomerisation during which the peptide bond preceding proline (the peptidyl-prolyl bond) is stabilised in the cis conformation. Mammalian cyclophilin A (CypA) is a major cellular target for the immunosuppressive drug cyclosporin A (CsA). Other roles for cyclophilins may include chaperone and cell signalling function. Length = 144

>gnl|CDD|223725 COG0652, PpiB, Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family [Posttranslational modification, protein turnover, chaperones]

 Score =  182 bits (463), Expect = 2e-57
 Identities = 75/159 (47%), Positives = 88/159 (55%), Gaps = 21/159 (13%)

Query: 18  GRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRVIKGFMIQGGDISA 77
           G I +E+Y D  PKT  NF  L                Y G  FHRVI GFMIQGGD + 
Sbjct: 9   GDITIELYPDKAPKTVANFLQLVK-----------EGFYDGTIFHRVIPGFMIQGGDPTG 57

Query: 78  GDGTGGESIYGLKFEDENFELKHER--KGMLSMANAG-PNTNGSQFFITTTRTSHLDGKH 134
           GDGTGG       F+DENF L  +R  +G LSMA AG PN+NGSQFFIT      LDGK+
Sbjct: 58  GDGTGGPGP---PFKDENFALNGDRHKRGTLSMARAGDPNSNGSQFFITVVDNPFLDGKY 114

Query: 135 VVFGRVIKGMGVVRSIEHVMTGD----NDCPIADVTITD 169
            VFG+V++GM VV  I++  T D     D P   V I  
Sbjct: 115 TVFGQVVEGMDVVDKIKNGDTDDSGYVQDVPADPVKILS 153

Length = 158

>gnl|CDD|238908 cd01927, cyclophilin_WD40, cyclophilin_WD40: cyclophilin-type peptidylprolyl cis- trans isomerases (cyclophilins) having a WD40 domain

 Score =  178 bits (453), Expect = 4e-56
 Identities = 84/151 (55%), Positives = 97/151 (64%), Gaps = 13/151 (8%)

Query: 18  GRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRVIKGFMIQGGDISA 77
           G I + ++ +  PKT ENF        G         +Y    FHRVIKGFMIQ GD   
Sbjct: 7   GDIHIRLFPEEAPKTVENFTTHA--RNG---------YYNNTIFHRVIKGFMIQTGD-PT 54

Query: 78  GDGTGGESIYGLKFEDE-NFELKHERKGMLSMANAGPNTNGSQFFITTTRTSHLDGKHVV 136
           GDGTGGESI+G +FEDE +  LKH+R   LSMANAGPNTNGSQFFITT  T  LD KH V
Sbjct: 55  GDGTGGESIWGKEFEDEFSPSLKHDRPYTLSMANAGPNTNGSQFFITTVATPWLDNKHTV 114

Query: 137 FGRVIKGMGVVRSIEHVMTGDNDCPIADVTI 167
           FGRV+KGM VV+ IE+V T  ND P  D+ I
Sbjct: 115 FGRVVKGMDVVQRIENVKTDKNDRPYEDIKI 145

This group consists of several hypothetical and putative eukaryotic and bacterial proteins which have a cyclophilin domain and a WD40 domain. Function of the protein is not known. Length = 148

>gnl|CDD|238909 cd01928, Cyclophilin_PPIL3_like, Cyclophilin_PPIL3_like

 Score =  168 bits (428), Expect = 2e-52
 Identities = 74/153 (48%), Positives = 94/153 (61%), Gaps = 13/153 (8%)

Query: 18  GRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRVIKGFMIQGGDISA 77
           G I +E++ D  PK  ENF ALC              +Y G  FHR IKGFM+Q GD   
Sbjct: 10  GDIKIELFCDDCPKACENFLALCASG-----------YYNGCIFHRNIKGFMVQTGD-PT 57

Query: 78  GDGTGGESIYGLKFEDENFE-LKHERKGMLSMANAGPNTNGSQFFITTTRTSHLDGKHVV 136
           G G GGESI+G KFEDE  E LKH+ +G++SMAN GPNTNGSQFFIT  +  HLDGK+ V
Sbjct: 58  GTGKGGESIWGKKFEDEFRETLKHDSRGVVSMANNGPNTNGSQFFITYAKQPHLDGKYTV 117

Query: 137 FGRVIKGMGVVRSIEHVMTGDNDCPIADVTITD 169
           FG+VI G   + ++E +       P+ ++ I D
Sbjct: 118 FGKVIDGFETLDTLEKLPVDKKYRPLEEIRIKD 150

Proteins similar to Human cyclophilin-like peptidylprolyl cis- trans isomerase (PPIL3). Members of this family lack a key residue important for cyclosporin binding: the tryptophan residue corresponding to W121 in human hCyP-18a; most members have a histidine at this position. The exact function of the protein is not known. Length = 153

>gnl|CDD|238904 cd01923, cyclophilin_RING, cyclophilin_RING: cyclophilin-type peptidylprolyl cis- trans isomerases (cyclophilins) having a modified RING finger domain

 Score =  161 bits (408), Expect = 3e-49
 Identities = 74/153 (48%), Positives = 96/153 (62%), Gaps = 13/153 (8%)

Query: 18  GRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRVIKGFMIQGGDISA 77
           G + +E++ D  PK  ENF  LC  +KG         +Y G  FHR I+ FMIQGGD + 
Sbjct: 9   GDLNLELHCDKAPKACENFIKLC--KKG---------YYDGTIFHRSIRNFMIQGGDPT- 56

Query: 78  GDGTGGESIYGLKFEDE-NFELKHERKGMLSMANAGPNTNGSQFFITTTRTSHLDGKHVV 136
           G G GGESI+G  F+DE    L H+ +G+LSMAN+GPNTNGSQFFIT     HLDGKH V
Sbjct: 57  GTGRGGESIWGKPFKDEFKPNLSHDGRGVLSMANSGPNTNGSQFFITYRSCKHLDGKHTV 116

Query: 137 FGRVIKGMGVVRSIEHVMTGDNDCPIADVTITD 169
           FGRV+ G+  + ++E+V     D P  ++ I D
Sbjct: 117 FGRVVGGLETLEAMENVPDPGTDRPKEEIKIED 149

This group includes the nuclear proteins, Human hCyP-60 and Caenorhabditis elegans MOG-6 which, compared to the archetypal cyclophilin Human cyclophilin A exhibit reduced peptidylprolyl cis- trans isomerase activity and lack a residue important for cyclophilin binding. Human hCyP-60 has been shown to physically interact with the proteinase inhibitor peptide eglin c and; C. elegans MOG-6 to physically interact with MEP-1, a nuclear zinc finger protein. MOG-6 has been shown to function in germline sex determination. Length = 159

>gnl|CDD|238903 cd01922, cyclophilin_SpCYP2_like, cyclophilin_SpCYP2_like: cyclophilin 2-like peptidylprolyl cis- trans isomerase (PPIase) domain similar to Schizosaccharomyces pombe cyp-2

 Score =  157 bits (399), Expect = 4e-48
 Identities = 82/151 (54%), Positives = 96/151 (63%), Gaps = 14/151 (9%)

Query: 18  GRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRVIKGFMIQGGDISA 77
           G I +E+Y +  PKT +NF  L    +G         +Y G  FHR+IK FMIQGGD   
Sbjct: 7   GEITLELYWNHAPKTCKNFYELAK--RG---------YYNGTIFHRLIKDFMIQGGD-PT 54

Query: 78  GDGTGGESIYGLKFEDE-NFELKHERKGMLSMANAGPNTNGSQFFITTTRTSHLDGKHVV 136
           G G GG SIYG KFEDE + ELKH   G+LSMANAGPNTNGSQFFIT   T  LDGKH +
Sbjct: 55  GTGRGGASIYGKKFEDEIHPELKHTGAGILSMANAGPNTNGSQFFITLAPTPWLDGKHTI 114

Query: 137 FGRVIKGMGVVRSIEHVMTGDNDCPIADVTI 167
           FGRV KGM V+ ++  V T   D PI +V I
Sbjct: 115 FGRVSKGMKVIENMVEVQT-QTDRPIDEVKI 144

These proteins bind their respective SNW chromatin binding protein in autologous systems, in a CsA independent manner indicating interaction with a surface outside the PPIase active site. SNW proteins play a basic and broad range role in signaling. Length = 146

>gnl|CDD|140248 PTZ00221, PTZ00221, cyclophilin; Provisional

 Score =  135 bits (341), Expect = 3e-38
 Identities = 66/169 (39%), Positives = 95/169 (56%), Gaps = 7/169 (4%)

Query: 5   RCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRV 64
           R FLDISIG  L GR++ E++ DV+P+T ENFRAL TG  GI  NTGV L Y     H V
Sbjct: 54  RAFLDISIGDVLAGRLVFELFEDVVPETVENFRALITGSCGIDTNTGVKLDYLYTPVHHV 113

Query: 65  IK--GFMIQGGDISAGDGTGGESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFFI 122
            +    ++ G   S    + G  I      DE +  +H  +G+L+M + GP+T+GS F I
Sbjct: 114 DRNNNIIVLGELDSFNVSSTGTPI-----ADEGYRHRHTERGLLTMISEGPHTSGSVFGI 168

Query: 123 TTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTITDCG 171
           T   +  LD K VVFG+ +  + ++  +E +   D   P+  VT++ CG
Sbjct: 169 TLGPSPSLDFKQVVFGKAVDDLSLLEKLESLPLDDVGRPLLPVTVSFCG 217

Length = 249

>gnl|CDD|238906 cd01925, cyclophilin_CeCYP16-like, cyclophilin_CeCYP16-like: cyclophilin-type peptidylprolyl cis- trans isomerase) (PPIase) domain similar to Caenorhabditis elegans cyclophilin 16

 Score =  125 bits (317), Expect = 1e-35
 Identities = 55/124 (44%), Positives = 75/124 (60%), Gaps = 13/124 (10%)

Query: 18  GRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRVIKGFMIQGGDISA 77
           G I +E+++   PK   NF  LC              +Y    FHRV+ GF+IQGGD + 
Sbjct: 15  GDIDIELWSKEAPKACRNFIQLCLEG-----------YYDNTIFHRVVPGFIIQGGDPT- 62

Query: 78  GDGTGGESIYGLKFEDE-NFELKHERKGMLSMANAGPNTNGSQFFITTTRTSHLDGKHVV 136
           G GTGGESIYG  F+DE +  L+  R+G++ MANAG ++NGSQFF T  +   L+ KH +
Sbjct: 63  GTGTGGESIYGEPFKDEFHSRLRFNRRGLVGMANAGDDSNGSQFFFTLDKADELNNKHTL 122

Query: 137 FGRV 140
           FG+V
Sbjct: 123 FGKV 126

C. elegans CeCYP-16, compared to the archetypal cyclophilin Human cyclophilin A has, a reduced peptidylprolyl cis- trans isomerase activity, is cyclosporin insensitive and shows an altered substrate preference favoring, hydrophobic, acidic or amide amino acids. Most members of this subfamily have a glutamate residue in the active site at the position equivalent to a tryptophan (W121 in Human cyclophilin A), which has been shown to be important for cyclophilin binding. Length = 171

>gnl|CDD|238902 cd01921, cyclophilin_RRM, cyclophilin_RRM: cyclophilin-type peptidylprolyl cis- trans isomerase domain occuring with a C-terminal RNA recognition motif domain (RRM)

 Score =  105 bits (265), Expect = 7e-28
 Identities = 60/161 (37%), Positives = 83/161 (51%), Gaps = 21/161 (13%)

Query: 17  EGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRVIKGFMIQGGDIS 76
            G ++++++ D  P    NF  LC  +           +Y    F+ V K F+ Q GD +
Sbjct: 6   LGDLVIDLFTDECPLACLNFLKLCKLK-----------YYNFCLFYNVQKDFIAQTGDPT 54

Query: 77  AGDGTGGESIYGLK-------FEDE-NFELKHERKGMLSMANAGPNTNGSQFFITTTR-T 127
            G G GGESIY          FE E    LKH +KG +SM NAG N NGSQF+IT     
Sbjct: 55  -GTGAGGESIYSQLYGRQARFFEPEILPLLKHSKKGTVSMVNAGDNLNGSQFYITLGENL 113

Query: 128 SHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTIT 168
            +LDGKH VFG+V++G  V+  I   +  D+  P+ D+ I 
Sbjct: 114 DYLDGKHTVFGQVVEGFDVLEKINDAIVDDDGRPLKDIRIK 154

This subfamily of the cyclophilin domain family contains a number of eukaryotic cyclophilins having the RRM domain including the nuclear proteins: human hCyP-57, Arabidopsis thaliana AtCYP59, Caenorhabditis elegans CeCyP-44 and Paramecium tetrurelia Kin241. The Kin241 protein has been shown to have a role in cell morphogenesis. Length = 166

>gnl|CDD|238901 cd01920, cyclophilin_EcCYP_like, cyclophilin_EcCYP_like: cyclophilin-type A-like peptidylprolyl cis- trans isomerase (PPIase) domain similar to the cytosolic E

 Score = 90.2 bits (224), Expect = 5e-22
 Identities = 56/169 (33%), Positives = 70/169 (41%), Gaps = 38/169 (22%)

Query: 18  GRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRVIKGFMIQGG---- 73
           G I+VE+Y+D  P T ENF A     KG          Y    FHRVI GF+IQGG    
Sbjct: 7   GDIVVELYDDKAPITVENFLAYV--RKG---------FYDNTIFHRVISGFVIQGGGFTP 55

Query: 74  ---DISAGDGTGGESIYGLKFEDENFELKHERKGMLSMA-NAGPNTNGSQFFITTTRTSH 129
                        E+  GL             +G ++MA    P++  SQFFI     + 
Sbjct: 56  DLAQKETLKPIKNEAGNGLS----------NTRGTIAMARTNAPDSATSQFFINLKDNAS 105

Query: 130 LD-----GKHVVFGRVIKGMGVVRSIEHVMTGDN----DCPIADVTITD 169
           LD       + VFG V +GM VV  I  V T       D P+ DV I  
Sbjct: 106 LDYQNEQWGYTVFGEVTEGMDVVDKIAGVETYSFGSYQDVPVQDVIIES 154

coli cyclophilin A and Streptomyces antibioticus SanCyp18. Compared to the archetypal cyclophilin Human cyclophilin A, these have reduced affinity for cyclosporin A. E. coli cyclophilin A has a similar peptidylprolyl cis- trans isomerase activity to the human cyclophilin A. Most members of this subfamily contain a phenylalanine residue at the position equivalent to Human cyclophilin W121, where a tyrptophan has been shown to be important for cyclophilin binding. Length = 155

>gnl|CDD|182824 PRK10903, PRK10903, peptidyl-prolyl cis-trans isomerase A (rotamase A); Provisional

 Score = 71.4 bits (175), Expect = 7e-15
 Identities = 54/168 (32%), Positives = 77/168 (45%), Gaps = 24/168 (14%)

Query: 17  EGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRVIKGFMIQGGDIS 76
            G I +E+ +   P + +NF            N+G    Y    FHRVI GFMIQGG  +
Sbjct: 37  AGNIELELNSQKAPVSVKNFVDYV--------NSG---FYNNTTFHRVIPGFMIQGGGFT 85

Query: 77  AGDGTGGESIYGLKFEDENFELKHERKGMLSMA-NAGPNTNGSQFFITTTRTSHLD-GK- 133
                  +    +K E +N  L++ R G ++MA  A  ++  SQFFI     + LD G+ 
Sbjct: 86  E-QMQQKKPNPPIKNEADN-GLRNTR-GTIAMARTADKDSATSQFFINVADNAFLDHGQR 142

Query: 134 ---HVVFGRVIKGMGVVRSIEHVMTGD----NDCPIADVTITDCGEIP 174
              + VFG+V+KGM V   I  V T D     + P   V I     +P
Sbjct: 143 DFGYAVFGKVVKGMDVADKISQVPTHDVGPYQNVPSKPVVILSAKVLP 190

Length = 190

>gnl|CDD|182734 PRK10791, PRK10791, peptidyl-prolyl cis-trans isomerase B (rotamase B); Provisional

 Score = 70.6 bits (173), Expect = 8e-15
 Identities = 54/171 (31%), Positives = 76/171 (44%), Gaps = 41/171 (23%)

Query: 18  GRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRVIKGFMIQGGDISA 77
           G I+++ ++D  P+T +NF   C   +G   NT          FHRVI GFMIQGG    
Sbjct: 9   GDIVIKTFDDKAPETVKNFLDYCR--EGFYNNT---------IFHRVINGFMIQGGGFEP 57

Query: 78  GDGTGGESIYGLKFEDENFELKHE-------RKGMLSMANAG-PNTNGSQFFITTT---- 125
                     G+K +     +K+E        +G L+MA    P++  +QFFI       
Sbjct: 58  ----------GMKQKATKEPIKNEANNGLKNTRGTLAMARTQAPHSATAQFFINVVDNDF 107

Query: 126 ---RTSHLDG-KHVVFGRVIKGMGVVRSIEHVMTGDN----DCPIADVTIT 168
                  L G  + VF  V++GM VV  I+ V TG +    D P  DV I 
Sbjct: 108 LNFSGESLQGWGYCVFAEVVEGMDVVDKIKGVATGRSGMHQDVPKEDVIIE 158

Length = 164

>gnl|CDD|238905 cd01924, cyclophilin_TLP40_like, cyclophilin_TLP40_like: cyclophilin-type peptidylprolyl cis- trans isomerases (cyclophilins) similar ot the Spinach thylakoid lumen protein TLP40

 Score = 59.0 bits (143), Expect = 1e-10
 Identities = 51/176 (28%), Positives = 72/176 (40%), Gaps = 56/176 (31%)

Query: 19  RIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRVIKGFMIQGGD---- 74
            I+++ YN   P TA NF  L   E+G          Y G+ FHRV  GF++Q GD    
Sbjct: 10  TIVLDGYN--APVTAGNFVDLV--ERGF---------YDGMEFHRVEGGFVVQTGDPQGK 56

Query: 75  -------------------ISAGDGTGGESIYGLKFE-----DENFELKHERKGMLSMAN 110
                                 G     + +YG   E     DE   L     G ++MA 
Sbjct: 57  NPGFPDPETGKSRTIPLEIKPEGQ---KQPVYGKTLEEAGRYDEQPVLPFNAFGAIAMAR 113

Query: 111 A--GPNTNGSQFFI-------TTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGD 157
               PN+  SQFF        T +R + LDG++ VFG V  G+ ++R ++    GD
Sbjct: 114 TEFDPNSASSQFFFLLKDNELTPSRNNVLDGRYAVFGYVTDGLDILRELK---VGD 166

Compared to the archetypal cyclophilin Human cyclophilin A, these proteins have similar peptidylprolyl cis- trans isomerase activity and reduced affinity for cyclosporin A. Spinach TLP40 has been shown to have a dual function as a folding catalyst and regulator of dephosphorylation. Length = 176

>gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here

 Score = 36.6 bits (85), Expect = 0.002
 Identities = 28/89 (31%), Positives = 35/89 (39%), Gaps = 18/89 (20%)

Query: 219 GNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLG 278
           GN +YK  DY  AL  Y KAL                   L    +  + N +A   KLG
Sbjct: 7   GNLYYKLGDYDEALEYYEKAL------------------ELDPDNADAYYNLAAAYYKLG 48

Query: 279 DLKGALLDTEFAMRDGDDNVKALFRQGQV 307
             + AL D E A+    DN KA +  G  
Sbjct: 49  KYEEALEDYEKALELDPDNAKAYYNLGLA 77

Length = 100

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	312
KOG0546	372	consensus HSP90 co-chaperone CPR7/Cyclophilin [Pos	100.0
KOG0880	217	consensus Peptidyl-prolyl cis-trans isomerase [Pos	100.0
KOG0879	177	consensus U-snRNP-associated cyclophilin type pept	100.0
PTZ00221	249	cyclophilin; Provisional	100.0
PTZ00060	183	cyclophilin; Provisional	100.0
cd01926	164	cyclophilin_ABH_like cyclophilin_ABH_like: Cycloph	100.0
PLN03149	186	peptidyl-prolyl isomerase H (cyclophilin H); Provi	100.0
KOG0881	164	consensus Cyclophilin type peptidyl-prolyl cis-tra	100.0
KOG0111	298	consensus Cyclophilin-type peptidyl-prolyl cis-tra	100.0
cd01923	159	cyclophilin_RING cyclophilin_RING: cyclophilin-typ	100.0
cd01921	166	cyclophilin_RRM cyclophilin_RRM: cyclophilin-type	100.0
COG0652	158	PpiB Peptidyl-prolyl cis-trans isomerase (rotamase	100.0
cd01928	153	Cyclophilin_PPIL3_like Cyclophilin_PPIL3_like. Pro	100.0
cd01927	148	cyclophilin_WD40 cyclophilin_WD40: cyclophilin-typ	100.0
cd01922	146	cyclophilin_SpCYP2_like cyclophilin_SpCYP2_like: c	100.0
cd01925	171	cyclophilin_CeCYP16-like cyclophilin_CeCYP16-like:	100.0
KOG0883	518	consensus Cyclophilin type, U box-containing pepti	100.0
PRK10903	190	peptidyl-prolyl cis-trans isomerase A (rotamase A)	100.0
KOG0884	161	consensus Similar to cyclophilin-type peptidyl-pro	100.0
PRK10791	164	peptidyl-prolyl cis-trans isomerase B (rotamase B)	100.0
KOG0882	558	consensus Cyclophilin-related peptidyl-prolyl cis-	100.0
cd01920	155	cyclophilin_EcCYP_like cyclophilin_EcCYP_like: cyc	100.0
KOG0865	167	consensus Cyclophilin type peptidyl-prolyl cis-tra	100.0
PF00160	155	Pro_isomerase: Cyclophilin type peptidyl-prolyl ci	100.0
cd00317	146	cyclophilin cyclophilin: cyclophilin-type peptidyl	100.0
KOG0415	479	consensus Predicted peptidyl prolyl cis-trans isom	100.0
KOG0885	439	consensus Peptidyl-prolyl cis-trans isomerase [Pos	100.0
cd01924	176	cyclophilin_TLP40_like cyclophilin_TLP40_like: cyc	100.0
KOG0543	397	consensus FKBP-type peptidyl-prolyl cis-trans isom	99.82
KOG0545	329	consensus Aryl-hydrocarbon receptor-interacting pr	99.77
KOG4234	271	consensus TPR repeat-containing protein [General f	99.76
KOG0553	304	consensus TPR repeat-containing protein [General f	99.74
KOG0547	606	consensus Translocase of outer mitochondrial membr	99.72
KOG0551	390	consensus Hsp90 co-chaperone CNS1 (contains TPR re	99.62
KOG0548	539	consensus Molecular co-chaperone STI1 [Posttransla	99.6
KOG4648	536	consensus Uncharacterized conserved protein, conta	99.54
KOG0550	486	consensus Molecular chaperone (DnaJ superfamily) [	99.45
KOG0548	539	consensus Molecular co-chaperone STI1 [Posttransla	99.4
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	99.34
KOG4642	284	consensus Chaperone-dependent E3 ubiquitin protein	99.33
PF13414	69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	99.3
KOG0376	476	consensus Serine-threonine phosphatase 2A, catalyt	99.27
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	99.2
PRK15359	144	type III secretion system chaperone protein SscB;	99.0
PRK15363	157	pathogenicity island 2 chaperone protein SscA; Pro	98.99
PRK15359	144	type III secretion system chaperone protein SscB;	98.96
KOG1308	377	consensus Hsp70-interacting protein Hip/Transient	98.86
KOG0550	486	consensus Molecular chaperone (DnaJ superfamily) [	98.83
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	98.82
TIGR02552	135	LcrH_SycD type III secretion low calcium response	98.71
PF14559	68	TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN	98.69
PF13371	73	TPR_9: Tetratricopeptide repeat	98.69
PRK11189	296	lipoprotein NlpI; Provisional	98.69
PF13424	78	TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15	98.64
KOG1310	758	consensus WD40 repeat protein [General function pr	98.63
KOG4555	175	consensus TPR repeat-containing protein [Function	98.6
PRK02603	172	photosystem I assembly protein Ycf3; Provisional	98.55
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	98.53
KOG4626	966	consensus O-linked N-acetylglucosamine transferase	98.51
PF12895	84	Apc3: Anaphase-promoting complex, cyclosome, subun	98.47
cd00189	100	TPR Tetratricopeptide repeat domain; typically con	98.46
PF13414	69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	98.46
CHL00033	168	ycf3 photosystem I assembly protein Ycf3	98.44
PRK10370	198	formate-dependent nitrite reductase complex subuni	98.4
TIGR02795	119	tol_pal_ybgF tol-pal system protein YbgF. Members	98.39
PF13512	142	TPR_18: Tetratricopeptide repeat	98.37
PF00515	34	TPR_1: Tetratricopeptide repeat; InterPro: IPR0014	98.33
PLN03098	453	LPA1 LOW PSII ACCUMULATION1; Provisional	98.32
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	98.3
KOG4626	966	consensus O-linked N-acetylglucosamine transferase	98.29
PRK15331	165	chaperone protein SicA; Provisional	98.28
TIGR02552	135	LcrH_SycD type III secretion low calcium response	98.26
TIGR03302	235	OM_YfiO outer membrane assembly lipoprotein YfiO.	98.26
KOG0624	504	consensus dsRNA-activated protein kinase inhibitor	98.21
TIGR02521	234	type_IV_pilW type IV pilus biogenesis/stability pr	98.2
KOG0553	304	consensus TPR repeat-containing protein [General f	98.19
PRK10866	243	outer membrane biogenesis protein BamD; Provisiona	98.18
PF15015	569	NYD-SP12_N: Spermatogenesis-associated, N-terminal	98.18
PRK11189	296	lipoprotein NlpI; Provisional	98.18
PRK15363	157	pathogenicity island 2 chaperone protein SscA; Pro	98.16
PF13525	203	YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M	98.11
PRK12370	553	invasion protein regulator; Provisional	98.1
KOG4234	271	consensus TPR repeat-containing protein [General f	98.09
PRK15179	694	Vi polysaccharide biosynthesis protein TviE; Provi	98.09
KOG1125	579	consensus TPR repeat-containing protein [General f	98.08
PRK09782	987	bacteriophage N4 receptor, outer membrane subunit;	98.06
PF07719	34	TPR_2: Tetratricopeptide repeat; InterPro: IPR0131	98.0
PF12968	144	DUF3856: Domain of Unknown Function (DUF3856); Int	97.99
PF13428	44	TPR_14: Tetratricopeptide repeat	97.96
PRK15179	694	Vi polysaccharide biosynthesis protein TviE; Provi	97.95
TIGR02521	234	type_IV_pilW type IV pilus biogenesis/stability pr	97.93
COG3063	250	PilF Tfp pilus assembly protein PilF [Cell motilit	97.91
PLN02789	320	farnesyltranstransferase	97.9
PLN02789	320	farnesyltranstransferase	97.89
KOG1126	638	consensus DNA-binding cell division cycle control	97.87
KOG1155	559	consensus Anaphase-promoting complex (APC), Cdc23	97.86
KOG4151	748	consensus Myosin assembly protein/sexual cycle pro	97.85
COG5010	257	TadD Flp pilus assembly protein TadD, contains TPR	97.82
PF12895	84	Apc3: Anaphase-promoting complex, cyclosome, subun	97.8
KOG2003	840	consensus TPR repeat-containing protein [General f	97.8
PRK10370	198	formate-dependent nitrite reductase complex subuni	97.8
PRK12370	553	invasion protein regulator; Provisional	97.8
PRK09782	987	bacteriophage N4 receptor, outer membrane subunit;	97.77
PLN03098	453	LPA1 LOW PSII ACCUMULATION1; Provisional	97.76
PRK15174	656	Vi polysaccharide export protein VexE; Provisional	97.75
KOG0624	504	consensus dsRNA-activated protein kinase inhibitor	97.73
KOG1126	638	consensus DNA-binding cell division cycle control	97.71
TIGR02795	119	tol_pal_ybgF tol-pal system protein YbgF. Members	97.71
KOG0547	606	consensus Translocase of outer mitochondrial membr	97.7
COG4783	484	Putative Zn-dependent protease, contains TPR repea	97.7
PF12688	120	TPR_5: Tetratrico peptide repeat	97.68
PRK15174	656	Vi polysaccharide export protein VexE; Provisional	97.67
PF14853	53	Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe	97.66
KOG1173	611	consensus Anaphase-promoting complex (APC), Cdc16	97.65
PRK11447	1157	cellulose synthase subunit BcsC; Provisional	97.64
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	97.64
KOG1173	611	consensus Anaphase-promoting complex (APC), Cdc16	97.61
PRK11447	1157	cellulose synthase subunit BcsC; Provisional	97.61
KOG1155	559	consensus Anaphase-promoting complex (APC), Cdc23	97.61
KOG0882	558	consensus Cyclophilin-related peptidyl-prolyl cis-	97.6
KOG1128	777	consensus Uncharacterized conserved protein, conta	97.6
PRK10803	263	tol-pal system protein YbgF; Provisional	97.56
TIGR02917	899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	97.55
PRK02603	172	photosystem I assembly protein Ycf3; Provisional	97.54
COG3063	250	PilF Tfp pilus assembly protein PilF [Cell motilit	97.52
KOG2076	895	consensus RNA polymerase III transcription factor	97.5
TIGR02917	899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	97.49
PF03704	146	BTAD: Bacterial transcriptional activator domain;	97.48
COG4785	297	NlpI Lipoprotein NlpI, contains TPR repeats [Gener	97.48
cd00189	100	TPR Tetratricopeptide repeat domain; typically con	97.47
PF13181	34	TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_	97.47
PRK10049	765	pgaA outer membrane protein PgaA; Provisional	97.45
PRK11788	389	tetratricopeptide repeat protein; Provisional	97.44
PRK10049	765	pgaA outer membrane protein PgaA; Provisional	97.4
KOG4162	799	consensus Predicted calmodulin-binding protein [Si	97.39
KOG0543	397	consensus FKBP-type peptidyl-prolyl cis-trans isom	97.38
PF13431	34	TPR_17: Tetratricopeptide repeat	97.38
PRK11788	389	tetratricopeptide repeat protein; Provisional	97.36
PF09976	145	TPR_21: Tetratricopeptide repeat; InterPro: IPR018	97.35
TIGR03302	235	OM_YfiO outer membrane assembly lipoprotein YfiO.	97.29
KOG1840	508	consensus Kinesin light chain [Cytoskeleton]	97.25
COG4105	254	ComL DNA uptake lipoprotein [General function pred	97.24
PF06552	186	TOM20_plant: Plant specific mitochondrial import r	97.23
KOG2003	840	consensus TPR repeat-containing protein [General f	97.19
PF13424	78	TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15	97.18
KOG4648	536	consensus Uncharacterized conserved protein, conta	97.17
PF13371	73	TPR_9: Tetratricopeptide repeat	97.14
CHL00033	168	ycf3 photosystem I assembly protein Ycf3	97.13
PF14938	282	SNAP: Soluble NSF attachment protein, SNAP; PDB: 1	97.11
KOG1125	579	consensus TPR repeat-containing protein [General f	97.08
PF09295	395	ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter	97.05
PRK15331	165	chaperone protein SicA; Provisional	97.05
smart00028	34	TPR Tetratricopeptide repeats. Repeats present in	97.0
KOG3060	289	consensus Uncharacterized conserved protein [Funct	96.97
PF13429	280	TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2	96.95
PRK00969	508	hypothetical protein; Provisional	96.92
TIGR03268	503	methan_mark_3 putative methanogenesis marker prote	96.92
PF06552	186	TOM20_plant: Plant specific mitochondrial import r	96.91
PF13176	36	TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_	96.91
PRK10803	263	tol-pal system protein YbgF; Provisional	96.85
COG4235	287	Cytochrome c biogenesis factor [Posttranslational	96.84
KOG1840	508	consensus Kinesin light chain [Cytoskeleton]	96.81
COG1729	262	Uncharacterized protein conserved in bacteria [Fun	96.75
PF14559	68	TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN	96.74
KOG4340	459	consensus Uncharacterized conserved protein [Funct	96.74
COG4070	512	Predicted peptidyl-prolyl cis-trans isomerase (rot	96.72
cd05804	355	StaR_like StaR_like; a well-conserved protein foun	96.66
KOG3785	557	consensus Uncharacterized conserved protein [Funct	96.66
PRK10153	517	DNA-binding transcriptional activator CadC; Provis	96.65
PF13174	33	TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_	96.65
PF13429	280	TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2	96.62
KOG4814	872	consensus Uncharacterized conserved protein [Funct	96.62
PF13431	34	TPR_17: Tetratricopeptide repeat	96.59
KOG2002	1018	consensus TPR-containing nuclear phosphoprotein th	96.59
TIGR03268	503	methan_mark_3 putative methanogenesis marker prote	96.57
KOG2076	895	consensus RNA polymerase III transcription factor	96.57
cd05804	355	StaR_like StaR_like; a well-conserved protein foun	96.51
KOG2002	1018	consensus TPR-containing nuclear phosphoprotein th	96.38
PF10579	80	Rapsyn_N: Rapsyn N-terminal myristoylation and lin	96.35
PRK14574	822	hmsH outer membrane protein; Provisional	96.31
PF00515	34	TPR_1: Tetratricopeptide repeat; InterPro: IPR0014	96.22
PF09295	395	ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter	96.22
PRK00969	508	hypothetical protein; Provisional	96.16
PF07719	34	TPR_2: Tetratricopeptide repeat; InterPro: IPR0131	96.09
PF10300	468	DUF3808: Protein of unknown function (DUF3808); In	96.06
KOG0376	476	consensus Serine-threonine phosphatase 2A, catalyt	96.02
PF13374	42	TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT	95.94
PF04733	290	Coatomer_E: Coatomer epsilon subunit; InterPro: IP	95.86
PF12688	120	TPR_5: Tetratrico peptide repeat	95.8
KOG1174	564	consensus Anaphase-promoting complex (APC), subuni	95.79
PRK14574	822	hmsH outer membrane protein; Provisional	95.77
KOG1156	700	consensus N-terminal acetyltransferase [Chromatin	95.69
PF09976	145	TPR_21: Tetratricopeptide repeat; InterPro: IPR018	95.67
PF13176	36	TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_	95.63
cd02681	76	MIT_calpain7_1 MIT: domain contained within Microt	95.58
KOG1129	478	consensus TPR repeat-containing protein [General f	95.57
KOG2471	696	consensus TPR repeat-containing protein [General f	95.54
PRK14720	906	transcript cleavage factor/unknown domain fusion p	95.51
KOG3824	472	consensus Huntingtin interacting protein HYPE [Gen	95.51
cd02682	75	MIT_AAA_Arch MIT: domain contained within Microtub	95.48
PF12862	94	Apc5: Anaphase-promoting complex subunit 5	95.48
KOG1130	639	consensus Predicted G-alpha GTPase interaction pro	95.29
KOG1128	777	consensus Uncharacterized conserved protein, conta	95.23
KOG2796	366	consensus Uncharacterized conserved protein [Funct	95.17
PF13428	44	TPR_14: Tetratricopeptide repeat	95.15
COG4783	484	Putative Zn-dependent protease, contains TPR repea	95.12
PF14938	282	SNAP: Soluble NSF attachment protein, SNAP; PDB: 1	95.11
KOG4555	175	consensus TPR repeat-containing protein [Function	95.1
PF04212	69	MIT: MIT (microtubule interacting and transport) d	95.06
PF12569	517	NARP1: NMDA receptor-regulated protein 1 ; InterPr	95.03
PRK10747	398	putative protoheme IX biogenesis protein; Provisio	94.99
TIGR00540	409	hemY_coli hemY protein. This is an uncharacterized	94.94
PF10602	177	RPN7: 26S proteasome subunit RPN7; InterPro: IPR01	94.89
KOG3364	149	consensus Membrane protein involved in organellar	94.87
PRK14720	906	transcript cleavage factor/unknown domain fusion p	94.83
COG4070	512	Predicted peptidyl-prolyl cis-trans isomerase (rot	94.76
KOG2376	652	consensus Signal recognition particle, subunit Srp	94.67
KOG3060	289	consensus Uncharacterized conserved protein [Funct	94.63
PF03704	146	BTAD: Bacterial transcriptional activator domain;	94.61
cd02683	77	MIT_1 MIT: domain contained within Microtubule Int	94.54
COG5010	257	TadD Flp pilus assembly protein TadD, contains TPR	94.54
KOG4340	459	consensus Uncharacterized conserved protein [Funct	94.53
KOG1127	1238	consensus TPR repeat-containing protein [RNA proce	94.5
PF12968	144	DUF3856: Domain of Unknown Function (DUF3856); Int	94.48
KOG1130	639	consensus Predicted G-alpha GTPase interaction pro	94.35
KOG0551	390	consensus Hsp90 co-chaperone CNS1 (contains TPR re	94.04
PF12569	517	NARP1: NMDA receptor-regulated protein 1 ; InterPr	94.0
PRK10941	269	hypothetical protein; Provisional	93.84
cd02684	75	MIT_2 MIT: domain contained within Microtubule Int	93.77
cd02677	75	MIT_SNX15 MIT: domain contained within Microtubule	93.76
KOG0545	329	consensus Aryl-hydrocarbon receptor-interacting pr	93.73
KOG1129	478	consensus TPR repeat-containing protein [General f	93.72
PF10952	140	DUF2753: Protein of unknown function (DUF2753); In	93.71
KOG1156	700	consensus N-terminal acetyltransferase [Chromatin	93.68
COG2956	389	Predicted N-acetylglucosaminyl transferase [Carboh	93.65
COG4976	287	Predicted methyltransferase (contains TPR repeat)	93.62
cd02678	75	MIT_VPS4 MIT: domain contained within Microtubule	93.62
PF13181	34	TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_	93.6
COG2956	389	Predicted N-acetylglucosaminyl transferase [Carboh	93.57
PRK10941	269	hypothetical protein; Provisional	93.46
KOG3785	557	consensus Uncharacterized conserved protein [Funct	93.39
PRK11906	458	transcriptional regulator; Provisional	93.33
PF08631	278	SPO22: Meiosis protein SPO22/ZIP4 like; InterPro:	93.3
PF13512	142	TPR_18: Tetratricopeptide repeat	93.29
cd02656	75	MIT MIT: domain contained within Microtubule Inter	93.21
PRK11906	458	transcriptional regulator; Provisional	93.09
COG4700	251	Uncharacterized protein conserved in bacteria cont	93.05
KOG2376	652	consensus Signal recognition particle, subunit Srp	92.8
COG1729	262	Uncharacterized protein conserved in bacteria [Fun	92.8
KOG4162	799	consensus Predicted calmodulin-binding protein [Si	92.76
cd02680	75	MIT_calpain7_2 MIT: domain contained within Microt	92.67
COG0457	291	NrfG FOG: TPR repeat [General function prediction	92.63
smart00745	77	MIT Microtubule Interacting and Trafficking molecu	92.6
KOG1174	564	consensus Anaphase-promoting complex (APC), subuni	92.36
PRK10153	517	DNA-binding transcriptional activator CadC; Provis	91.93
PF10516	38	SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetrat	91.74
PF12903	147	DUF3830: Protein of unknown function (DUF3830); In	91.69
PF02259	352	FAT: FAT domain; InterPro: IPR003151 The FAT domai	91.54
KOG1127	1238	consensus TPR repeat-containing protein [RNA proce	91.11
PF13374	42	TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT	90.9
COG4235	287	Cytochrome c biogenesis factor [Posttranslational	90.83
COG0457	291	NrfG FOG: TPR repeat [General function prediction	90.81
COG4785	297	NlpI Lipoprotein NlpI, contains TPR repeats [Gener	90.77
PRK10747	398	putative protoheme IX biogenesis protein; Provisio	90.45
KOG1941	518	consensus Acetylcholine receptor-associated protei	90.38
PF11817	247	Foie-gras_1: Foie gras liver health family 1; Inte	90.28
PRK10866	243	outer membrane biogenesis protein BamD; Provisiona	90.15
smart00028	34	TPR Tetratricopeptide repeats. Repeats present in	90.08
PF13525	203	YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M	89.86
TIGR00540	409	hemY_coli hemY protein. This is an uncharacterized	89.72
PF09986	214	DUF2225: Uncharacterized protein conserved in bact	89.58
PF14863	141	Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB	89.56
PF04733	290	Coatomer_E: Coatomer epsilon subunit; InterPro: IP	89.19
PF06957	422	COPI_C: Coatomer (COPI) alpha subunit C-terminus;	88.92
KOG1586	288	consensus Protein required for fusion of vesicles	88.7
PF13174	33	TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_	88.43
KOG3081	299	consensus Vesicle coat complex COPI, epsilon subun	88.04
KOG2796	366	consensus Uncharacterized conserved protein [Funct	87.79
cd02679	79	MIT_spastin MIT: domain contained within Microtubu	87.34
PF07721	26	TPR_4: Tetratricopeptide repeat; InterPro: IPR0117	87.22
PF04184	539	ST7: ST7 protein; InterPro: IPR007311 The ST7 (for	86.76
KOG1941	518	consensus Acetylcholine receptor-associated protei	86.49
TIGR03504	44	FimV_Cterm FimV C-terminal domain. This protein is	86.32
COG3947	361	Response regulator containing CheY-like receiver a	86.18
PF10516	38	SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetrat	85.83
KOG0292	1202	consensus Vesicle coat complex COPI, alpha subunit	85.54
COG2912	269	Uncharacterized conserved protein [Function unknow	85.33
PF07720	36	TPR_3: Tetratricopeptide repeat; InterPro: IPR0117	85.28
PF00244	236	14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14	85.13
PF04781	111	DUF627: Protein of unknown function (DUF627); Inte	85.12
KOG1308	377	consensus Hsp70-interacting protein Hip/Transient	84.54
KOG4642	284	consensus Chaperone-dependent E3 ubiquitin protein	83.75
PF14561	90	TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S	83.5
KOG0495	913	consensus HAT repeat protein [RNA processing and m	83.33
PF08631	278	SPO22: Meiosis protein SPO22/ZIP4 like; InterPro:	83.17
COG2912	269	Uncharacterized conserved protein [Function unknow	82.49
PRK04841	903	transcriptional regulator MalT; Provisional	80.59
COG3629	280	DnrI DNA-binding transcriptional activator of the	80.17

>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=5.5e-78  Score=527.73  Aligned_cols=309  Identities=56%  Similarity=0.855  Sum_probs=287.7

Q ss_pred             CCeEEEEEEECCeeeeEEEEEEeCCCCchhHHhHHHHhhCCCCCCCCCCCCceecCCEEEEeecCCeEEeCCCCCCCCCC
Q 021445            3 RPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRVIKGFMIQGGDISAGDGTG   82 (312)
Q Consensus         3 ~~~v~~d~~~~~~~~G~i~ieL~~~~aP~~~~nF~~l~~~~~~~~~~~~~~~~Y~g~~~~rv~~~~~iq~G~~~~~~~~~   82 (312)
                      ||+|||||+|+|.+.||||||||.|.||+||+||..||+|..|.+..+++++.|+|+.||||+++|||||||++.++|+|
T Consensus         8 ~pr~ffDISI~ge~~GRIvfeLf~dv~PKTaENFraLCtGE~G~~~~~gk~L~YKG~~FHRViK~FMiQgGDfs~gnGtG   87 (372)
T KOG0546|consen    8 NPRVFFDISIGGEPAGRIVFELFNDVVPKTAENFRALCTGEKGGGLTTGKPLHYKGSRFHRVIKNFMIQGGDFSEGNGTG   87 (372)
T ss_pred             CceEEEEEEeCCcccceEEEEeecccCchhHHHHHHHhccccCCCCCCCCeeeecCchhheeeecceeeccccccCCCCC
Confidence            79999999999999999999999999999999999999999997788999999999999999999999999999999999


Q ss_pred             CCcccCCCCCCCcccccCCCcceEEeecCCCCCCCceEEEecCCCCCCCCCCceEEEEEeChHHHHHHhcccCCCCCCcc
Q 021445           83 GESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFFITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPI  162 (312)
Q Consensus        83 ~~~~~~~~~~~e~~~~~~~~~G~l~~~~~~~~~~~sqF~I~~~~~~~ld~~~~vfG~V~~G~~vl~~i~~~~~~~~~~P~  162 (312)
                      |.||||.+|+||++.++|+++++|||||.|||+||||||||+.+.|||||+|+|||+||+|++||+.|++..++...+|.
T Consensus        88 GeSIYG~~FdDEnF~lKHdrpflLSMAN~GpNTNgSQFFITT~p~PHLdGkHVVFGqVI~G~~VVr~IEn~~~d~~skP~  167 (372)
T KOG0546|consen   88 GESIYGEKFDDENFELKHDRPFLLSMANRGPNTNGSQFFITTVPTPHLDGKHVVFGQVIKGKEVVREIENLETDEESKPL  167 (372)
T ss_pred             cccccccccccccceeccCcchhhhhhcCCCCCCCcceEEeCCCCCCcCCceeEEeeEeechhHHHHHhccccccCCCCc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999989999


Q ss_pred             cceEEeeeeeeCCC----CCCCCCccCCCCCCCCCCCCCCCC-CCCChhhhhhhhhhhHhhhhhHHhhhcHHHHHHHHHH
Q 021445          163 ADVTITDCGEIPEG----ADDGISNFFNDGDSYPDWPADLDQ-TPNELSWWMNAVDSIKVFGNEHYKKQDYKMALRKYRK  237 (312)
Q Consensus       163 ~~i~I~~~g~l~~~----~~~~~~~~~~~~d~~~~~~~~~~~-~~~~~~~~~~~~~~~k~~Gn~~~~~~~y~~A~~~Y~k  237 (312)
                      .+|.|.+||+|...    ..+..+..+..+|.++++++++.. ...+..+.++.++..|+.||..|++++|..|...|.+
T Consensus       168 ~dV~I~dCGel~~~~~~~~~~~a~~~~~sgd~~~d~p~~~~~~~~~~~~~~~~~~~~~k~~~~~~~kk~~~~~a~~k~~k  247 (372)
T KOG0546|consen  168 ADVVISDCGELVKKSKVKEDAGASEPDETGDSYEDYPKDDRSWDDKDFDKALEREEKKKNIGNKEFKKQRYREALAKYRK  247 (372)
T ss_pred             cceEecccccccccccccccccCCCCCCCCCcccccccccccccccccchhhhhhhhhhccchhhhhhccHhHHHHHHHH
Confidence            99999999999987    566667778899999999977655 7888899999999999999999999999999999999


Q ss_pred             HHHHhhhccccCCCCchh-hhHHHHHHHHHHhHHHHHHHHcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHhhhh
Q 021445          238 ALRYLDICWEKEGIDEGK-SSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQVSIIL  311 (312)
Q Consensus       238 al~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~l~p~~~Ka~~rrg~a~~~L  311 (312)
                      ++++++..+.......++ ...+.+....++.|.++|-++++.+..|+..|..+++.++...||+|||+++++.+
T Consensus       248 ~~r~~~~~s~~~~~e~~~~~~~~~~~r~~~~~n~~~~~lk~~~~~~a~~~~~~~~~~~~s~tka~~Rr~~~~~~~  322 (372)
T KOG0546|consen  248 ALRYLSEQSRDREKEQENRIPPLRELRFSIRRNLAAVGLKVKGRGGARFRTNEALRDERSKTKAHYRRGQAYKLL  322 (372)
T ss_pred             HhhhhcccccccccccccccccccccccccccchHHhcccccCCCcceeccccccccChhhCcHHHHHHhHHHhh
Confidence            999998633222222222 35578888999999999999999999999999999999999999999999999865

>KOG0880 consensus Peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=1.1e-52  Score=338.08  Aligned_cols=165  Identities=64%  Similarity=1.088  Sum_probs=158.1

Q ss_pred             eEEEEEEECCeeeeEEEEEEeCCCCchhHHhHHHHhh-CCCCCCCCCCCCceecCCEEEEeecCCeEEeCCCCCCCCCCC
Q 021445            5 RCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCT-GEKGIGPNTGVPLHYKGVRFHRVIKGFMIQGGDISAGDGTGG   83 (312)
Q Consensus         5 ~v~~d~~~~~~~~G~i~ieL~~~~aP~~~~nF~~l~~-~~~~~~~~~~~~~~Y~g~~~~rv~~~~~iq~G~~~~~~~~~~   83 (312)
                      +|||||.+++...|||+|.||+..+|+||+||..||. +.++.        .|.|+.||||+|||||||||++.++|+|+
T Consensus        41 kV~fdi~~g~~~~grIvigLfG~~vPKTV~NF~~l~~~~~~~~--------gY~gS~FhRVi~nfmIQGGd~t~g~gtGg  112 (217)
T KOG0880|consen   41 KVYFDIEIGGEPVGRIVIGLFGKVVPKTVENFRALATSGEKGY--------GYKGSKFHRVIPNFMIQGGDFTKGDGTGG  112 (217)
T ss_pred             EEEEEEEECCEeccEEEEEeccccchHHHHHHHHHHccCCCCc--------ccCCceeeeeecCceeecCccccCCCCCC
Confidence            7999999999999999999999999999999999999 44443        49999999999999999999999999999


Q ss_pred             CcccCCCCCCCcccccCCCcceEEeecCCCCCCCceEEEecCCCCCCCCCCceEEEEEeChHHHHHHhcccCCCCCCccc
Q 021445           84 ESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFFITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIA  163 (312)
Q Consensus        84 ~~~~~~~~~~e~~~~~~~~~G~l~~~~~~~~~~~sqF~I~~~~~~~ld~~~~vfG~V~~G~~vl~~i~~~~~~~~~~P~~  163 (312)
                      .++||.+|+|||+.++|.++|.||||+.||++||||||||+...+||||+|+|||+|++||++|.+|+...++.+++|.+
T Consensus       113 ~SIyG~~F~DENf~LkH~rpG~lSMAn~GpDtNGsQFfItT~~t~wLDGkhVVFGqVl~Gmdvv~~Ie~~~TD~~dkP~e  192 (217)
T KOG0880|consen  113 KSIYGEKFPDENFKLKHDRPGRLSMANAGPDTNGSQFFITTVKTPWLDGKHVVFGQVLEGMDVVRKIENVKTDERDKPLE  192 (217)
T ss_pred             eEeecCCCCCccceeecCCCceEeeeccCCCCCCceEEEEecCCccccCceeEEeeehhhHHHHHHHHhcccCCCCCccc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ceEEeeeeeeCCCC
Q 021445          164 DVTITDCGEIPEGA  177 (312)
Q Consensus       164 ~i~I~~~g~l~~~~  177 (312)
                      +++|.+||.++...
T Consensus       193 ~v~I~~~g~l~~~~  206 (217)
T KOG0880|consen  193 DVVIANCGELPVEY  206 (217)
T ss_pred             cEEEeecCcccccc
Confidence            99999999996433

>KOG0879 consensus U-snRNP-associated cyclophilin type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=3.4e-51  Score=309.27  Aligned_cols=168  Identities=58%  Similarity=0.994  Sum_probs=162.8

Q ss_pred             CCeEEEEEEECCeeeeEEEEEEeCCCCchhHHhHHHHhhCCCCCCCCCCCCceecCCEEEEeecCCeEEeCCCCCCCCCC
Q 021445            3 RPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRVIKGFMIQGGDISAGDGTG   82 (312)
Q Consensus         3 ~~~v~~d~~~~~~~~G~i~ieL~~~~aP~~~~nF~~l~~~~~~~~~~~~~~~~Y~g~~~~rv~~~~~iq~G~~~~~~~~~   82 (312)
                      ||.||||++++|.++|||.||||.+.+|+|++||.+.|+|.-   ...++|+-|++++||||+++|||||||+..++|+|
T Consensus        10 nPvVF~dv~igg~~~GrikieLFadivPkTAENFRQFCTGE~---r~~g~PiGYK~~tFHRvIkdFMiQgGDFv~gDGtG   86 (177)
T KOG0879|consen   10 NPVVFFDVAIGGRPIGRIKIELFADIVPKTAENFRQFCTGEY---RKDGVPIGYKNSTFHRVIKDFMIQGGDFVNGDGTG   86 (177)
T ss_pred             CCeEEEEEeeCCEEcceEEEEEeeccChhhHHHHHhhccccc---ccCCccccccccchHHHhhhheeccCceecCCCce
Confidence            899999999999999999999999999999999999999863   35788889999999999999999999999999999


Q ss_pred             CCcccCCCCCCCcccccCCCcceEEeecCCCCCCCceEEEecCCCCCCCCCCceEEEEEeChHHHHHHhcccCCCCCCcc
Q 021445           83 GESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFFITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPI  162 (312)
Q Consensus        83 ~~~~~~~~~~~e~~~~~~~~~G~l~~~~~~~~~~~sqF~I~~~~~~~ld~~~~vfG~V~~G~~vl~~i~~~~~~~~~~P~  162 (312)
                      ..+||+.+|+||++.++|..+|+|||+++|++++|+|||||..+..+||++|+|||+|++|+.++++|+++|+..+.+|.
T Consensus        87 ~~sIy~~~F~DENFtlkH~~PGlLSMANsG~~tNGCQFFITcakcdfLD~KHVVFGrvldGlli~rkIEnvp~G~NnkPK  166 (177)
T KOG0879|consen   87 VASIYGSTFPDENFTLKHDGPGLLSMANSGKDTNGCQFFITCAKCDFLDGKHVVFGRVLDGLLIMRKIENVPTGPNNKPK  166 (177)
T ss_pred             EEEEcCCCCCCcceeeecCCCceeeccccCCCCCCceEEEEecccccccCceEEEeeeehhhhhhhhhhcCCCCCCCCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cceEEeeeeee
Q 021445          163 ADVTITDCGEI  173 (312)
Q Consensus       163 ~~i~I~~~g~l  173 (312)
                      -+|.|+.||.+
T Consensus       167 l~v~i~qCGem  177 (177)
T KOG0879|consen  167 LPVVIVQCGEM  177 (177)
T ss_pred             CcEEEeecccC
Confidence            99999999964

>PTZ00221 cyclophilin; Provisional

Probab=100.00  E-value=2e-47  Score=328.49  Aligned_cols=174  Identities=39%  Similarity=0.629  Sum_probs=160.7

Q ss_pred             CCeEEEEEEECCeeeeEEEEEEeCCCCchhHHhHHHHhhCCCCCCCCCCCCceecCCEEEEeecC-CeEEeCCCCCCCCC
Q 021445            3 RPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRVIKG-FMIQGGDISAGDGT   81 (312)
Q Consensus         3 ~~~v~~d~~~~~~~~G~i~ieL~~~~aP~~~~nF~~l~~~~~~~~~~~~~~~~Y~g~~~~rv~~~-~~iq~G~~~~~~~~   81 (312)
                      +|+|||||++++...|+|+||||.+.||+||+||++||++..+.+..++.+++|+|+.||||+++ ++||+||+..    
T Consensus        52 ~~rVfldisig~~~~GrIvIELf~d~aP~T~eNF~~Lc~g~~g~~~~~g~k~~Y~gt~FhRVi~~~f~iqgGD~~~----  127 (249)
T PTZ00221         52 SCRAFLDISIGDVLAGRLVFELFEDVVPETVENFRALITGSCGIDTNTGVKLDYLYTPVHHVDRNNNIIVLGELDS----  127 (249)
T ss_pred             CCEEEEEEeeCCeecceEEEEEeCCCCcHHHHHHHHHhhcccccccccCcccccCCCEEEEEeCCCCEEEeCCCCC----
Confidence            89999999999999999999999999999999999999998776666677778999999999986 8999999753    


Q ss_pred             CCCcccCCCCCCCcccccCCCcceEEeecCCCCCCCceEEEecCCCCCCCCCCceEEEEEeChHHHHHHhcccCCCCCCc
Q 021445           82 GGESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFFITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCP  161 (312)
Q Consensus        82 ~~~~~~~~~~~~e~~~~~~~~~G~l~~~~~~~~~~~sqF~I~~~~~~~ld~~~~vfG~V~~G~~vl~~i~~~~~~~~~~P  161 (312)
                      ++.+++|.+|.+|++.++|+++|+|+|++.|++++|||||||+++.|+||++|+|||+|++||+||++|+.++++..++|
T Consensus       128 ~g~s~~G~~f~dE~~~~~h~~~G~LsMan~GpntngSQFfITl~~~p~LDgk~vVFGrVveGmdVv~kIe~v~~d~~grP  207 (249)
T PTZ00221        128 FNVSSTGTPIADEGYRHRHTERGLLTMISEGPHTSGSVFGITLGPSPSLDFKQVVFGKAVDDLSLLEKLESLPLDDVGRP  207 (249)
T ss_pred             CCccCCCCcccCccccccCCCCCEEEeCcCCCCCccceEEEECCCCCccCCCceEEEEEEeCHHHHHHHHcCCcCCCCCC
Confidence            23467789999999999999999999999999999999999999999999999999999999999999999999888999


Q ss_pred             ccceEEeeeeeeCCCCCCC
Q 021445          162 IADVTITDCGEIPEGADDG  180 (312)
Q Consensus       162 ~~~i~I~~~g~l~~~~~~~  180 (312)
                      ..+|+|.+||++..+-+.+
T Consensus       208 ~~~V~I~~Cgvl~~~~p~~  226 (249)
T PTZ00221        208 LLPVTVSFCGALTGEKPPG  226 (249)
T ss_pred             CCCeEEEECeEecCCCCCc
Confidence            9999999999998766664

>PTZ00060 cyclophilin; Provisional

Probab=100.00  E-value=4.9e-47  Score=316.80  Aligned_cols=171  Identities=62%  Similarity=1.012  Sum_probs=157.3

Q ss_pred             CCCCeEEEEEEECCeeeeEEEEEEeCCCCchhHHhHHHHhhCCCCCCCCCCCCceecCCEEEEeecCCeEEeCCCCCCCC
Q 021445            1 MARPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRVIKGFMIQGGDISAGDG   80 (312)
Q Consensus         1 ~~~~~v~~d~~~~~~~~G~i~ieL~~~~aP~~~~nF~~l~~~~~~~~~~~~~~~~Y~g~~~~rv~~~~~iq~G~~~~~~~   80 (312)
                      |.||+||||+++++++.|+|+||||.+.||++|+||++||++...+.  +++..+|+|+.||||+|+++|||||+..+.|
T Consensus        13 ~~~~~v~~di~i~~~~~G~ivIeL~~d~aP~t~~nF~~L~~g~~~~~--~g~~~~Y~~~~fhRvi~~~~iqgGd~~~~~g   90 (183)
T PTZ00060         13 SKRPKVFFDISIDNAPAGRIVFELFSDVTPKTAENFRALCIGDKVGS--SGKNLHYKGSIFHRIIPQFMCQGGDITNHNG   90 (183)
T ss_pred             CCCCEEEEEEEECCEeCceEEEEEcCCCCcHHHHHHHHHhcCCcccc--cCcccccCCeEEEEEcCCCeEEeCCccCCCC
Confidence            45899999999999999999999999999999999999999864321  3445699999999999999999999887778


Q ss_pred             CCCCcccCCCCCCCcccccCCCcceEEeecCCCCCCCceEEEecCCCCCCCCCCceEEEEEeChHHHHHHhcccCCCCCC
Q 021445           81 TGGESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFFITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDC  160 (312)
Q Consensus        81 ~~~~~~~~~~~~~e~~~~~~~~~G~l~~~~~~~~~~~sqF~I~~~~~~~ld~~~~vfG~V~~G~~vl~~i~~~~~~~~~~  160 (312)
                      .++.+++|..+++|...++|.++|+|+|++.++++++||||||+++.|+||++|+|||||++||+||++|+..++. +++
T Consensus        91 ~~g~~~~g~~~~~e~~~~~h~~~G~lsma~~g~~~~~sqFfIt~~~~~~Ldg~~tvFG~Vi~G~dvl~~I~~~~~~-~~~  169 (183)
T PTZ00060         91 TGGESIYGRKFTDENFKLKHDQPGLLSMANAGPNTNGSQFFITTVPCPWLDGKHVVFGKVIEGMEVVRAMEKEGTQ-SGY  169 (183)
T ss_pred             CCCCcccccccCCccccccCCCCCEEEeccCCCCCCcceEEEEeCCCcccCCCccEEEEEEccHHHHHHHHccCCC-CCC
Confidence            8888999999999988999999999999999999999999999999999999999999999999999999998885 489


Q ss_pred             cccceEEeeeeeeC
Q 021445          161 PIADVTITDCGEIP  174 (312)
Q Consensus       161 P~~~i~I~~~g~l~  174 (312)
                      |..+|+|.+||+++
T Consensus       170 P~~~v~I~~cg~~~  183 (183)
T PTZ00060        170 PKKPVVVTDCGELQ  183 (183)
T ss_pred             CcCCeEEEEeEEcC
Confidence            99999999999973

>cd01926 cyclophilin_ABH_like cyclophilin_ABH_like: Cyclophilin A, B and H-like cyclophilin-type peptidylprolyl cis- trans isomerase (PPIase) domain

Probab=100.00  E-value=9e-47  Score=310.88  Aligned_cols=164  Identities=67%  Similarity=1.132  Sum_probs=152.4

Q ss_pred             CeEEEEEEECCeeeeEEEEEEeCCCCchhHHhHHHHhhCCCCCCCCCCCCceecCCEEEEeecCCeEEeCCCCCCCCCCC
Q 021445            4 PRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRVIKGFMIQGGDISAGDGTGG   83 (312)
Q Consensus         4 ~~v~~d~~~~~~~~G~i~ieL~~~~aP~~~~nF~~l~~~~~~~~~~~~~~~~Y~g~~~~rv~~~~~iq~G~~~~~~~~~~   83 (312)
                      |+||||++++|++.|+|+||||.+.||++|+||++||++.++++.   +..+|+++.||||+|+++||+||+..+++.++
T Consensus         1 p~v~~di~i~~~~~G~i~ieL~~~~aP~~~~nF~~L~~~~~g~~~---~~~~Y~~~~f~Rv~~~~~iq~Gd~~~~~g~~~   77 (164)
T cd01926           1 PKVFFDITIGGEPAGRIVMELFADVVPKTAENFRALCTGEKGKGG---KPFGYKGSTFHRVIPDFMIQGGDFTRGNGTGG   77 (164)
T ss_pred             CEEEEEEeECCeeceeEEEEEeCCCCCHHHHHHHHHhcccCCCcc---cccccCCCEEEEEeCCcEEEcCCccCCCCCCC
Confidence            899999999999999999999999999999999999997543221   33489999999999999999999877778888


Q ss_pred             CcccCCCCCCCcccccCCCcceEEeecCCCCCCCceEEEecCCCCCCCCCCceEEEEEeChHHHHHHhcccCCCCCCccc
Q 021445           84 ESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFFITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIA  163 (312)
Q Consensus        84 ~~~~~~~~~~e~~~~~~~~~G~l~~~~~~~~~~~sqF~I~~~~~~~ld~~~~vfG~V~~G~~vl~~i~~~~~~~~~~P~~  163 (312)
                      .++++..+++|+..++|+++|+|+|++.++++++|||||++++.++||++|+|||||++|||||++|++++++ +++|..
T Consensus        78 ~~~~g~~~~~e~~~~~h~~~G~lsma~~~~~~~~sqFfIt~~~~~~Ld~~~tvFG~V~~G~dvl~~i~~~~~~-~~~P~~  156 (164)
T cd01926          78 KSIYGEKFPDENFKLKHTGPGLLSMANAGPNTNGSQFFITTVKTPWLDGKHVVFGKVVEGMDVVKKIENVGSG-NGKPKK  156 (164)
T ss_pred             CcccCCccCCCCccccCCCccEEEeeECCCCCcccEEEEEeCCCCccCCcccEEEEEEEcHHHHHHHHcCCCC-CCCCcC
Confidence            8999999999988899999999999999999999999999999999999999999999999999999999998 799999


Q ss_pred             ceEEeeee
Q 021445          164 DVTITDCG  171 (312)
Q Consensus       164 ~i~I~~~g  171 (312)
                      +|+|.+||
T Consensus       157 ~i~I~~cG  164 (164)
T cd01926         157 KVVIADCG  164 (164)
T ss_pred             CeEEEECC
Confidence            99999997

This family represents the archetypal cystolic cyclophilin similar to human cyclophilins A, B and H. PPIase is an enzyme which accelerates protein folding by catalyzing the cis-trans isomerization of the peptide bonds preceding proline residues. These enzymes have been implicated in protein folding processes which depend on catalytic /chaperone-like activities. As cyclophilins, Human hCyP-A, human cyclophilin-B (hCyP-19), S. cerevisiae Cpr1 and C. elegans Cyp-3, are inhibited by the immunosuppressive drug cyclopsporin A (CsA). CsA binds to the PPIase active site. Cyp-3. S. cerevisiae Cpr1 interacts with the Rpd3 - Sin3 complex and in addition is a component of the Set3 complex. S. cerevisiae Cpr1 has also been shown to have a role in Zpr1p nuclear transport. Human cyclophilin H associates with the [U4/U6.U5] tri-snRNP particles of the spl

>PLN03149 peptidyl-prolyl isomerase H (cyclophilin H); Provisional

Probab=100.00  E-value=6.3e-47  Score=316.40  Aligned_cols=170  Identities=59%  Similarity=0.970  Sum_probs=156.1

Q ss_pred             CCCCeEEEEEEECCeeeeEEEEEEeCCCCchhHHhHHHHhhCCCCCCCCCCCCceecCCEEEEeecCCeEEeCCCCCCCC
Q 021445            1 MARPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRVIKGFMIQGGDISAGDG   80 (312)
Q Consensus         1 ~~~~~v~~d~~~~~~~~G~i~ieL~~~~aP~~~~nF~~l~~~~~~~~~~~~~~~~Y~g~~~~rv~~~~~iq~G~~~~~~~   80 (312)
                      |.||+||||++++++..|+|+||||.+.||++|+||++||+++...   .+.+..|+++.||||+|+++|||||+..++|
T Consensus        16 ~~~~~v~~di~~~~~~~G~i~ieL~~~~aP~t~~NF~~Lc~g~~~~---~g~~~~Y~~~~fhrVi~~f~iqgGd~~~~~g   92 (186)
T PLN03149         16 PKNPVVFFDVTIGGIPAGRIKMELFADIAPKTAENFRQFCTGEFRK---AGLPQGYKGCQFHRVIKDFMIQGGDFLKGDG   92 (186)
T ss_pred             CCCCEEEEEEeeCCcccccEEEEEcCCCCcHHHHHHHHHHhhhccc---cCcccccCCcEEEEEcCCcEEEcCCcccCCC
Confidence            4589999999999999999999999999999999999999976311   1222349999999999999999999877788


Q ss_pred             CCCCcccCCCCCCCcccccCCCcceEEeecCCCCCCCceEEEecCCCCCCCCCCceEEEEE-eChHHHHHHhcccCCCCC
Q 021445           81 TGGESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFFITTTRTSHLDGKHVVFGRVI-KGMGVVRSIEHVMTGDND  159 (312)
Q Consensus        81 ~~~~~~~~~~~~~e~~~~~~~~~G~l~~~~~~~~~~~sqF~I~~~~~~~ld~~~~vfG~V~-~G~~vl~~i~~~~~~~~~  159 (312)
                      +++.++++..|++|++.++|+++|+|+|++.++++++||||||+++.|+||++|+|||+|+ +||++|++|+.++++.++
T Consensus        93 ~g~~~~~g~~f~~e~~~~~h~~~G~lsma~~g~~s~~sqFfIt~~~~p~Ldg~~tVFG~Vi~eG~dvl~~I~~~~~~~~~  172 (186)
T PLN03149         93 TGCVSIYGSKFEDENFIAKHTGPGLLSMANSGPNTNGCQFFITCAKCDWLDNKHVVFGRVLGDGLLVVRKIENVATGPNN  172 (186)
T ss_pred             CCcccccCCccCCcccccccCCCCEEEEeeCCCCCcccEEEEECCCCCccCCCceEEEEEEECcHHHHHHHHcCCCCCCC
Confidence            8888999999999988899999999999999999999999999999999999999999999 799999999999998889


Q ss_pred             CcccceEEeeeeee
Q 021445          160 CPIADVTITDCGEI  173 (312)
Q Consensus       160 ~P~~~i~I~~~g~l  173 (312)
                      +|..+|+|.+||++
T Consensus       173 ~P~~~i~I~~cG~~  186 (186)
T PLN03149        173 RPKLACVISECGEM  186 (186)
T ss_pred             CCcCCeEEEeCEeC
Confidence            99999999999984

>KOG0881 consensus Cyclophilin type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=4.4e-46  Score=278.23  Aligned_cols=153  Identities=54%  Similarity=0.859  Sum_probs=146.6

Q ss_pred             CCeEEEEEEECCeeeeEEEEEEeCCCCchhHHhHHHHhhCCCCCCCCCCCCceecCCEEEEeecCCeEEeCCCCCCCCCC
Q 021445            3 RPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRVIKGFMIQGGDISAGDGTG   82 (312)
Q Consensus         3 ~~~v~~d~~~~~~~~G~i~ieL~~~~aP~~~~nF~~l~~~~~~~~~~~~~~~~Y~g~~~~rv~~~~~iq~G~~~~~~~~~   82 (312)
                      -|.|+++++     +|.|++|||-..||+||.||.+|++.+           ||+|+.||||+++|+|||||++ +.|.|
T Consensus         9 ~~~V~LeTs-----mG~i~~ElY~kHaP~TC~NF~eLarrg-----------YYn~v~FHRii~DFmiQGGDPT-GTGRG   71 (164)
T KOG0881|consen    9 PPNVTLETS-----MGKITLELYWKHAPRTCQNFAELARRG-----------YYNGVIFHRIIKDFMIQGGDPT-GTGRG   71 (164)
T ss_pred             CCeEEEeec-----ccceehhhhhhcCcHHHHHHHHHHhcc-----------cccceeeeehhhhheeecCCCC-CCCCC
Confidence            578999988     899999999999999999999999998           9999999999999999999987 88999


Q ss_pred             CCcccCCCCCCCcc-cccCCCcceEEeecCCCCCCCceEEEecCCCCCCCCCCceEEEEEeChHHHHHHhcccCCCCCCc
Q 021445           83 GESIYGLKFEDENF-ELKHERKGMLSMANAGPNTNGSQFFITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCP  161 (312)
Q Consensus        83 ~~~~~~~~~~~e~~-~~~~~~~G~l~~~~~~~~~~~sqF~I~~~~~~~ld~~~~vfG~V~~G~~vl~~i~~~~~~~~~~P  161 (312)
                      +.+|||..|+||-. .++|..+|.|||++.||++|||||||||++.+||||+|++||||+.||+|+..+..+.+++.++|
T Consensus        72 GaSIYG~kF~DEi~~dLkhTGAGILsMANaGPnTNgSQFFiTLAPt~~LDGKHTIFGRV~~Gm~vikr~G~v~Td~~DRP  151 (164)
T KOG0881|consen   72 GASIYGDKFEDEIHSDLKHTGAGILSMANAGPNTNGSQFFITLAPTQWLDGKHTIFGRVCSGMEVIKRMGMVETDNSDRP  151 (164)
T ss_pred             ccccccchhhhhhhhhhcccchhhhhhhccCCCCCCceEEEEecCccccCCcceeehhhhhhHHHHHhhcceecCCCCCC
Confidence            99999999999965 89999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccceEEeeeee
Q 021445          162 IADVTITDCGE  172 (312)
Q Consensus       162 ~~~i~I~~~g~  172 (312)
                      ..+++|.+.-.
T Consensus       152 i~~~kIika~~  162 (164)
T KOG0881|consen  152 IDEVKIIKAYP  162 (164)
T ss_pred             ccceeeEeeec
Confidence            99999988754

>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=6.6e-46  Score=303.22  Aligned_cols=164  Identities=59%  Similarity=1.015  Sum_probs=159.6

Q ss_pred             CCCCeEEEEEEECCeeeeEEEEEEeCCCCchhHHhHHHHhhCCCCCCCCCCCCceecCCEEEEeecCCeEEeCCCCCCCC
Q 021445            1 MARPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRVIKGFMIQGGDISAGDG   80 (312)
Q Consensus         1 ~~~~~v~~d~~~~~~~~G~i~ieL~~~~aP~~~~nF~~l~~~~~~~~~~~~~~~~Y~g~~~~rv~~~~~iq~G~~~~~~~   80 (312)
                      |++|+||+++.|++...|||+++|..+..|+|++||..||++..|+|        |.|++||||+|.||+||||+++++|
T Consensus       134 ~~~pqv~~~ikig~~~~Gri~~~lrtdv~Pmtaenfr~Lctge~gfg--------ykgssfhriip~fmcqggdftn~ng  205 (298)
T KOG0111|consen  134 MENPQVYHDIKIGEDRAGRIVMLLRTDVVPMTAENFRCLCTGEAGFG--------YKGSSFHRIIPKFMCQGGDFTNGNG  205 (298)
T ss_pred             hhChHhhhheeecccccceEEEeecccCChhhhhhhhhhccccCccC--------ccccchhhhhhhhhccCCccccCCC
Confidence            67999999999999999999999999999999999999999999887        9999999999999999999999999


Q ss_pred             CCCCcccCCCCCCCcccccCCCcceEEeecCCCCCCCceEEEecCCCCCCCCCCceEEEEEeChHHHHHHhcccCCCCCC
Q 021445           81 TGGESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFFITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDC  160 (312)
Q Consensus        81 ~~~~~~~~~~~~~e~~~~~~~~~G~l~~~~~~~~~~~sqF~I~~~~~~~ld~~~~vfG~V~~G~~vl~~i~~~~~~~~~~  160 (312)
                      +|+.+|||.+|.||++.|+|..+|+|||+++|+|+|||||||++....|||++|+|||.|++||+||+++++..+.. ++
T Consensus       206 tggksiygkkfddenf~lkht~pgtlsmansgantngsqffict~ktdwldgkhvvfghv~eg~~vvrq~e~qgsks-gk  284 (298)
T KOG0111|consen  206 TGGKSIYGKKFDDENFTLKHTMPGTLSMANSGANTNGSQFFICTEKTDWLDGKHVVFGHVVEGMNVVRQVEQQGSKS-GK  284 (298)
T ss_pred             CCCcccccccccccceeeecCCCceeeccccCCCCCCceEEEEecccccccCceeEEeeecchHHHHHHHHhccCCC-CC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999987666 99


Q ss_pred             cccceEEeeeeee
Q 021445          161 PIADVTITDCGEI  173 (312)
Q Consensus       161 P~~~i~I~~~g~l  173 (312)
                      |.+.|.|.+||.+
T Consensus       285 p~qkv~i~~cge~  297 (298)
T KOG0111|consen  285 PQQKVKIVECGEI  297 (298)
T ss_pred             cceEEEEEecccc
Confidence            9999999999986

>cd01923 cyclophilin_RING cyclophilin_RING: cyclophilin-type peptidylprolyl cis- trans isomerases (cyclophilins) having a modified RING finger domain

Probab=100.00  E-value=8.6e-44  Score=291.30  Aligned_cols=151  Identities=48%  Similarity=0.804  Sum_probs=142.9

Q ss_pred             eeeEEEEEEeCCCCchhHHhHHHHhhCCCCCCCCCCCCceecCCEEEEeecCCeEEeCCCCCCCCCCCCcccCCCCCCCc
Q 021445           16 LEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRVIKGFMIQGGDISAGDGTGGESIYGLKFEDEN   95 (312)
Q Consensus        16 ~~G~i~ieL~~~~aP~~~~nF~~l~~~~~~~~~~~~~~~~Y~g~~~~rv~~~~~iq~G~~~~~~~~~~~~~~~~~~~~e~   95 (312)
                      +.|+|+||||.+.||++|+||++||+.+           ||+|+.||||+|+++|||||+. ++|.++.++++.++++|.
T Consensus         7 ~~G~i~ieL~~~~aP~t~~nF~~L~~~g-----------~Y~~~~f~rv~~~~~iq~Gd~~-~~g~~~~~~~g~~~~~E~   74 (159)
T cd01923           7 NKGDLNLELHCDKAPKACENFIKLCKKG-----------YYDGTIFHRSIRNFMIQGGDPT-GTGRGGESIWGKPFKDEF   74 (159)
T ss_pred             ccccEEEEEeCCCChHHHHHHHHHHhcC-----------ccCCcEEEEEeCCcEEEecccC-CCCCCCccccCCccCccc
Confidence            4899999999999999999999999987           8999999999999999999986 678888899999999985


Q ss_pred             c-cccCCCcceEEeecCCCCCCCceEEEecCCCCCCCCCCceEEEEEeChHHHHHHhcccCCCCCCcccceEEeeeeeeC
Q 021445           96 F-ELKHERKGMLSMANAGPNTNGSQFFITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTITDCGEIP  174 (312)
Q Consensus        96 ~-~~~~~~~G~l~~~~~~~~~~~sqF~I~~~~~~~ld~~~~vfG~V~~G~~vl~~i~~~~~~~~~~P~~~i~I~~~g~l~  174 (312)
                      . .++|+++|+|+|++.++++++|||||++++.|+||++|+|||||++||++|++|+.++++.+++|..+|+|.+|.++.
T Consensus        75 ~~~~~h~~~G~v~ma~~~~~s~~sqFfIt~~~~~~Ld~~~~vFG~V~~G~~vl~~I~~~~~~~~~~P~~~i~I~~~~i~~  154 (159)
T cd01923          75 KPNLSHDGRGVLSMANSGPNTNGSQFFITYRSCKHLDGKHTVFGRVVGGLETLEAMENVPDPGTDRPKEEIKIEDTSVFV  154 (159)
T ss_pred             ccCcCcCCCcEEEEeeCCCCCcccEEEEECCCCcccCCCccEEEEEEcCHHHHHHHHcCCCCCCCCCCCCeEEEEeEEEe
Confidence            4 688999999999999999999999999999999999999999999999999999999998889999999999999999


Q ss_pred             CCCC
Q 021445          175 EGAD  178 (312)
Q Consensus       175 ~~~~  178 (312)
                      +||+
T Consensus       155 dpf~  158 (159)
T cd01923         155 DPFE  158 (159)
T ss_pred             CCCC
Confidence            8886

This group includes the nuclear proteins, Human hCyP-60 and Caenorhabditis elegans MOG-6 which, compared to the archetypal cyclophilin Human cyclophilin A exhibit reduced peptidylprolyl cis- trans isomerase activity and lack a residue important for cyclophilin binding. Human hCyP-60 has been shown to physically interact with the proteinase inhibitor peptide eglin c and; C. elegans MOG-6 to physically interact with MEP-1, a nuclear zinc finger protein. MOG-6 has been shown to function in germline sex determination.

>cd01921 cyclophilin_RRM cyclophilin_RRM: cyclophilin-type peptidylprolyl cis- trans isomerase domain occuring with a C-terminal RNA recognition motif domain (RRM)

Probab=100.00  E-value=3.3e-43  Score=290.07  Aligned_cols=154  Identities=40%  Similarity=0.655  Sum_probs=140.4

Q ss_pred             eeeeEEEEEEeCCCCchhHHhHHHHhhCCCCCCCCCCCCceecCCEEEEeecCCeEEeCCCCCCCCCCCCcccC------
Q 021445           15 ELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRVIKGFMIQGGDISAGDGTGGESIYG------   88 (312)
Q Consensus        15 ~~~G~i~ieL~~~~aP~~~~nF~~l~~~~~~~~~~~~~~~~Y~g~~~~rv~~~~~iq~G~~~~~~~~~~~~~~~------   88 (312)
                      |+.|+|+||||.+.||++|+||++||+++           ||+|+.||||+|+++|||||+. +++.++.++++      
T Consensus         4 Ts~G~i~ieL~~~~aP~t~~nF~~L~~~~-----------~Y~g~~fhrvi~~f~iQgGd~~-~~g~~~~~~~~~~~~~~   71 (166)
T cd01921           4 TTLGDLVIDLFTDECPLACLNFLKLCKLK-----------YYNFCLFYNVQKDFIAQTGDPT-GTGAGGESIYSQLYGRQ   71 (166)
T ss_pred             eccCCEEEEEcCCCCCHHHHHHHHHHhcC-----------CcCCCEEEEEeCCceEEECCcC-CCCCCCccccccccccc
Confidence            45899999999999999999999999987           8999999999999999999986 56667666654      


Q ss_pred             -CCCCCCcc-cccCCCcceEEeecCCCCCCCceEEEecCC-CCCCCCCCceEEEEEeChHHHHHHhcccCCCCCCcccce
Q 021445           89 -LKFEDENF-ELKHERKGMLSMANAGPNTNGSQFFITTTR-TSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADV  165 (312)
Q Consensus        89 -~~~~~e~~-~~~~~~~G~l~~~~~~~~~~~sqF~I~~~~-~~~ld~~~~vfG~V~~G~~vl~~i~~~~~~~~~~P~~~i  165 (312)
                       ..+.+|.. .++|+.+|+|+|++.++++++|||||++++ .++||++|+|||||++||++|++|+.++++.+++|..+|
T Consensus        72 ~~~~~~e~~~~~~h~~~G~l~ma~~~~~~~~SQFfIt~~~~~~~Ldg~~tvFG~Vi~G~dvv~~I~~~~~~~~~~P~~~i  151 (166)
T cd01921          72 ARFFEPEILPLLKHSKKGTVSMVNAGDNLNGSQFYITLGENLDYLDGKHTVFGQVVEGFDVLEKINDAIVDDDGRPLKDI  151 (166)
T ss_pred             CcccCcccCCccccCCceEEEEeECCCCCccceEEEEcCCCCcccCCCccEEEEEEcCHHHHHHHHcCCCCCCCCCCCCe
Confidence             34666654 688999999999999999999999999985 799999999999999999999999999998889999999


Q ss_pred             EEeeeeeeCCCCCCC
Q 021445          166 TITDCGEIPEGADDG  180 (312)
Q Consensus       166 ~I~~~g~l~~~~~~~  180 (312)
                      +|.+|+++.+||++|
T Consensus       152 ~I~~~~i~~~pf~~~  166 (166)
T cd01921         152 RIKHTHILDDPFPDP  166 (166)
T ss_pred             EEEEEEEECCCCCCC
Confidence            999999999999875

This subfamily of the cyclophilin domain family contains a number of eukaryotic cyclophilins having the RRM domain including the nuclear proteins: human hCyP-57, Arabidopsis thaliana AtCYP59, Caenorhabditis elegans CeCyP-44 and Paramecium tetrurelia Kin241. The Kin241 protein has been shown to have a role in cell morphogenesis.

>COG0652 PpiB Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=2.6e-43  Score=282.56  Aligned_cols=146  Identities=52%  Similarity=0.839  Sum_probs=131.6

Q ss_pred             CeeeeEEEEEEeCCCCchhHHhHHHHhhCCCCCCCCCCCCceecCCEEEEeecCCeEEeCCCCCCCCCCCCcccCCCCCC
Q 021445           14 VELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRVIKGFMIQGGDISAGDGTGGESIYGLKFED   93 (312)
Q Consensus        14 ~~~~G~i~ieL~~~~aP~~~~nF~~l~~~~~~~~~~~~~~~~Y~g~~~~rv~~~~~iq~G~~~~~~~~~~~~~~~~~~~~   93 (312)
                      .++.|+|+|+||++.||+||+||++||+.+           ||+|+.||||+|+|||||||+..++|.+++   +.+|++
T Consensus         5 ~t~~G~I~ieL~~~~aP~Tv~NF~~l~~~g-----------~Ydg~~FHRVi~~FmiQgGd~~~~~g~gg~---~~~f~~   70 (158)
T COG0652           5 ETNKGDITIELYPDKAPKTVANFLQLVKEG-----------FYDGTIFHRVIPGFMIQGGDPTGGDGTGGP---GPPFKD   70 (158)
T ss_pred             eccCCCEEEEECCCcCcHHHHHHHHHHHcC-----------CCCCceEEEeecCceeecCCCCCCCCCCCC---CCCCcc
Confidence            356899999999999999999999999977           999999999999999999999977688877   478999


Q ss_pred             CcccccCCC--cceEEeecCC-CCCCCceEEEecCCCCCCCCCCceEEEEEeChHHHHHHhcccCCCC----CCcccceE
Q 021445           94 ENFELKHER--KGMLSMANAG-PNTNGSQFFITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDN----DCPIADVT  166 (312)
Q Consensus        94 e~~~~~~~~--~G~l~~~~~~-~~~~~sqF~I~~~~~~~ld~~~~vfG~V~~G~~vl~~i~~~~~~~~----~~P~~~i~  166 (312)
                      |++...|.+  +|+||||+.+ |++++|||||++.+.++||++|+|||+|++|||+|++|++..+...    ..|..+++
T Consensus        71 E~~~~~~~~~~~G~lsMA~~g~P~t~~SQFFI~~~~~~~Ld~~ytVFG~Vv~GmdvvdkI~~~~~~~~~~~~~~~~~~~~  150 (158)
T COG0652          71 ENFALNGDRHKRGTLSMARAGDPNSNGSQFFITVVDNPFLDGKYTVFGQVVEGMDVVDKIKNGDTDDSGYVQDVPADPVK  150 (158)
T ss_pred             cccccccccCCcceEeEcccCCcCCccCeEEEEecCCcccCCCCcEEEEEehhHHHHHHHHcCCccCCCcccCCCCCCeE
Confidence            988877777  9999999999 9999999999999999999999999999999999999999877653    45667777


Q ss_pred             Eeeeeee
Q 021445          167 ITDCGEI  173 (312)
Q Consensus       167 I~~~g~l  173 (312)
                      |.+..++
T Consensus       151 i~~~~~~  157 (158)
T COG0652         151 ILSVKIV  157 (158)
T ss_pred             Eeeeeee
Confidence            8776654

>cd01928 Cyclophilin_PPIL3_like Cyclophilin_PPIL3_like

Probab=100.00  E-value=1.2e-42  Score=282.47  Aligned_cols=149  Identities=50%  Similarity=0.841  Sum_probs=138.7

Q ss_pred             EEEEEEECCeeeeEEEEEEeCCCCchhHHhHHHHhhCCCCCCCCCCCCceecCCEEEEeecCCeEEeCCCCCCCCCCCCc
Q 021445            6 CFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRVIKGFMIQGGDISAGDGTGGES   85 (312)
Q Consensus         6 v~~d~~~~~~~~G~i~ieL~~~~aP~~~~nF~~l~~~~~~~~~~~~~~~~Y~g~~~~rv~~~~~iq~G~~~~~~~~~~~~   85 (312)
                      |.|+++     .|+|+||||++.||++|+||++||+++           ||+|+.||||+|++++||||+. ++|.++.+
T Consensus         3 v~l~T~-----~G~i~ieL~~~~aP~t~~nF~~L~~~g-----------~Y~~~~f~rv~~~f~iq~Gd~~-~~g~g~~~   65 (153)
T cd01928           3 VTLHTN-----LGDIKIELFCDDCPKACENFLALCASG-----------YYNGCIFHRNIKGFMVQTGDPT-GTGKGGES   65 (153)
T ss_pred             EEEEEc-----cccEEEEEcCCCCcHHHHHHHHHHhcC-----------ccCCcEEEEeCCCCEEEccccC-CCCCCCCc
Confidence            455554     899999999999999999999999997           8999999999999999999986 56778888


Q ss_pred             ccCCCCCCCcc-cccCCCcceEEeecCCCCCCCceEEEecCCCCCCCCCCceEEEEEeChHHHHHHhcccCCCCCCcccc
Q 021445           86 IYGLKFEDENF-ELKHERKGMLSMANAGPNTNGSQFFITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIAD  164 (312)
Q Consensus        86 ~~~~~~~~e~~-~~~~~~~G~l~~~~~~~~~~~sqF~I~~~~~~~ld~~~~vfG~V~~G~~vl~~i~~~~~~~~~~P~~~  164 (312)
                      +++.++++|.. .++|+++|+|+|++.++++++|||||++++.|+||++|+|||||++||++|++|++++++.+++|..+
T Consensus        66 ~~~~~~~~e~~~~~~~~~~G~v~ma~~~~~~~~SqFfI~~~~~~~Ld~~~tvFG~V~~G~dvl~~I~~~~~~~~~~P~~~  145 (153)
T cd01928          66 IWGKKFEDEFRETLKHDSRGVVSMANNGPNTNGSQFFITYAKQPHLDGKYTVFGKVIDGFETLDTLEKLPVDKKYRPLEE  145 (153)
T ss_pred             cCCCccccccccCCCcCCCcEEEEeeCCCCCcccEEEEEeCCCcccCCCceEEEEEEeCHHHHHHHHcCCCCCCCCCcCC
Confidence            89999999976 67899999999999999999999999999999999999999999999999999999999888999999


Q ss_pred             eEEeeee
Q 021445          165 VTITDCG  171 (312)
Q Consensus       165 i~I~~~g  171 (312)
                      |+|.+|.
T Consensus       146 i~I~~~~  152 (153)
T cd01928         146 IRIKDVT  152 (153)
T ss_pred             eEEEEeE
Confidence            9999984

Proteins similar to Human cyclophilin-like peptidylprolyl cis- trans isomerase (PPIL3). Members of this family lack a key residue important for cyclosporin binding: the tryptophan residue corresponding to W121 in human hCyP-18a; most members have a histidine at this position. The exact function of the protein is not known.

>cd01927 cyclophilin_WD40 cyclophilin_WD40: cyclophilin-type peptidylprolyl cis- trans isomerases (cyclophilins) having a WD40 domain

Probab=100.00  E-value=1.7e-42  Score=280.27  Aligned_cols=143  Identities=58%  Similarity=0.889  Sum_probs=135.2

Q ss_pred             eeeeEEEEEEeCCCCchhHHhHHHHhhCCCCCCCCCCCCceecCCEEEEeecCCeEEeCCCCCCCCCCCCcccCCCCCCC
Q 021445           15 ELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRVIKGFMIQGGDISAGDGTGGESIYGLKFEDE   94 (312)
Q Consensus        15 ~~~G~i~ieL~~~~aP~~~~nF~~l~~~~~~~~~~~~~~~~Y~g~~~~rv~~~~~iq~G~~~~~~~~~~~~~~~~~~~~e   94 (312)
                      |+.|+|+||||.+.||++|+||++||+++           ||+|+.||||+|+++|||||+. ++|.++.++++..+++|
T Consensus         4 T~~G~i~ieL~~~~aP~t~~nF~~L~~~g-----------~Y~~~~f~Rvi~~f~iq~Gd~~-~~g~g~~~~~~~~~~~e   71 (148)
T cd01927           4 TTKGDIHIRLFPEEAPKTVENFTTHARNG-----------YYNNTIFHRVIKGFMIQTGDPT-GDGTGGESIWGKEFEDE   71 (148)
T ss_pred             eccccEEEEEeCCCCcHHHHHHHHHhhcC-----------CcCCcEEEEEcCCcEEEecccC-CCCCCCCcccCCccccc
Confidence            45899999999999999999999999987           8999999999999999999986 67888888999999999


Q ss_pred             cc-cccCCCcceEEeecCCCCCCCceEEEecCCCCCCCCCCceEEEEEeChHHHHHHhcccCCCCCCcccceEEee
Q 021445           95 NF-ELKHERKGMLSMANAGPNTNGSQFFITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTITD  169 (312)
Q Consensus        95 ~~-~~~~~~~G~l~~~~~~~~~~~sqF~I~~~~~~~ld~~~~vfG~V~~G~~vl~~i~~~~~~~~~~P~~~i~I~~  169 (312)
                      .. .++|.++|+|+|++.++++++|||||++++.|+||++|+|||||++||++|++|+.++++.+++|..+|+|.+
T Consensus        72 ~~~~~~h~~~G~l~ma~~~~~s~~SqFfIt~~~~p~Ldg~~tvFG~V~~G~dvl~~I~~~~~~~~~~P~~~i~I~~  147 (148)
T cd01927          72 FSPSLKHDRPYTLSMANAGPNTNGSQFFITTVATPWLDNKHTVFGRVVKGMDVVQRIENVKTDKNDRPYEDIKIIN  147 (148)
T ss_pred             cccccCcCCCeEEEEeeCCCCCCCceEEEEcCCCcccCCCceEEEEEEcCHHHHHHHHcCCCCCCCCCcCCeEEEe
Confidence            76 7889999999999999999999999999999999999999999999999999999999988899999999986

This group consists of several hypothetical and putative eukaryotic and bacterial proteins which have a cyclophilin domain and a WD40 domain. Function of the protein is not known.

>cd01922 cyclophilin_SpCYP2_like cyclophilin_SpCYP2_like: cyclophilin 2-like peptidylprolyl cis- trans isomerase (PPIase) domain similar to Schizosaccharomyces pombe cyp-2

Probab=100.00  E-value=9.2e-42  Score=275.23  Aligned_cols=142  Identities=57%  Similarity=0.880  Sum_probs=132.9

Q ss_pred             eeeeEEEEEEeCCCCchhHHhHHHHhhCCCCCCCCCCCCceecCCEEEEeecCCeEEeCCCCCCCCCCCCcccCCCCCCC
Q 021445           15 ELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRVIKGFMIQGGDISAGDGTGGESIYGLKFEDE   94 (312)
Q Consensus        15 ~~~G~i~ieL~~~~aP~~~~nF~~l~~~~~~~~~~~~~~~~Y~g~~~~rv~~~~~iq~G~~~~~~~~~~~~~~~~~~~~e   94 (312)
                      |+.|+|+||||.+.||++|+||++||+.+           ||+++.||||+|+++|||||+. ++|.++.++++.+|++|
T Consensus         4 T~~G~i~ieL~~~~aP~t~~nF~~L~~~g-----------~Y~~~~f~Rvi~~f~iq~Gd~~-~~g~~~~~~~~~~~~~e   71 (146)
T cd01922           4 TTMGEITLELYWNHAPKTCKNFYELAKRG-----------YYNGTIFHRLIKDFMIQGGDPT-GTGRGGASIYGKKFEDE   71 (146)
T ss_pred             eccccEEEEEcCCCCcHHHHHHHHHHhcC-----------CcCCcEEEEEcCCcEEEecccC-CCCCCcccccCCCcccc
Confidence            45899999999999999999999999987           8999999999999999999986 56777888899999998


Q ss_pred             c-ccccCCCcceEEeecCCCCCCCceEEEecCCCCCCCCCCceEEEEEeChHHHHHHhcccCCCCCCcccceEEee
Q 021445           95 N-FELKHERKGMLSMANAGPNTNGSQFFITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTITD  169 (312)
Q Consensus        95 ~-~~~~~~~~G~l~~~~~~~~~~~sqF~I~~~~~~~ld~~~~vfG~V~~G~~vl~~i~~~~~~~~~~P~~~i~I~~  169 (312)
                      . ..++|+++|+|+|++.++++++|||||++++.|+||++|+|||||++||+||++|+.++++ +++|..+|+|..
T Consensus        72 ~~~~~~h~~~G~l~ma~~~~~s~~sqFfIt~~~~p~Ld~~~tvFG~V~~G~dvl~~I~~~~~~-~~~P~~~I~I~~  146 (146)
T cd01922          72 IHPELKHTGAGILSMANAGPNTNGSQFFITLAPTPWLDGKHTIFGRVSKGMKVIENMVEVQTQ-TDRPIDEVKILK  146 (146)
T ss_pred             cccCcCCCCCeEEEEeeCCCCCCccEEEEEcCCCcccCCCCCEEEEEEcCHHHHHHHHhCCCC-CCCcCCCeEEeC
Confidence            5 4789999999999999999999999999999999999999999999999999999999998 789999999863

These proteins bind their respective SNW chromatin binding protein in autologous systems, in a CsA independent manner indicating interaction with a surface outside the PPIase active site. SNW proteins play a basic and broad range role in signaling.

>cd01925 cyclophilin_CeCYP16-like cyclophilin_CeCYP16-like: cyclophilin-type peptidylprolyl cis- trans isomerase) (PPIase) domain similar to Caenorhabditis elegans cyclophilin 16

Probab=100.00  E-value=7.4e-41  Score=277.01  Aligned_cols=160  Identities=39%  Similarity=0.698  Sum_probs=147.0

Q ss_pred             eEEEEEEECCeeeeEEEEEEeCCCCchhHHhHHHHhhCCCCCCCCCCCCceecCCEEEEeecCCeEEeCCCCCCCCCCCC
Q 021445            5 RCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRVIKGFMIQGGDISAGDGTGGE   84 (312)
Q Consensus         5 ~v~~d~~~~~~~~G~i~ieL~~~~aP~~~~nF~~l~~~~~~~~~~~~~~~~Y~g~~~~rv~~~~~iq~G~~~~~~~~~~~   84 (312)
                      +|.|+++     .|+|+||||.+.||++|+||++||+.+           ||+|+.||||+|+++|||||+. ++|.++.
T Consensus         7 ~v~i~Ts-----~G~i~ieL~~~~~P~t~~nF~~L~~~~-----------~Y~~~~f~Rvi~~f~iQgGd~~-~~g~g~~   69 (171)
T cd01925           7 KVILKTT-----AGDIDIELWSKEAPKACRNFIQLCLEG-----------YYDNTIFHRVVPGFIIQGGDPT-GTGTGGE   69 (171)
T ss_pred             EEEEEEc-----cccEEEEEeCCCChHHHHHHHHHHhcC-----------CCCCCEEEEEcCCcEEEccccC-CCCccCc
Confidence            4666665     899999999999999999999999987           8999999999999999999986 6788888


Q ss_pred             cccCCCCCCCcc-cccCCCcceEEeecCCCCCCCceEEEecCCCCCCCCCCceEEEEEe-ChHHHHHHhcccCCCCCCcc
Q 021445           85 SIYGLKFEDENF-ELKHERKGMLSMANAGPNTNGSQFFITTTRTSHLDGKHVVFGRVIK-GMGVVRSIEHVMTGDNDCPI  162 (312)
Q Consensus        85 ~~~~~~~~~e~~-~~~~~~~G~l~~~~~~~~~~~sqF~I~~~~~~~ld~~~~vfG~V~~-G~~vl~~i~~~~~~~~~~P~  162 (312)
                      ++++.++++|.. .++|+++|+|+|++.++++++|||||++++.++||++|+|||+|++ +++++++|+.++++.+++|.
T Consensus        70 s~~g~~~~~E~~~~~~~~~~G~l~ma~~g~~s~~sqFfIt~~~~~~ldg~~tvFG~V~g~~~~~v~~i~~~~~~~~~~P~  149 (171)
T cd01925          70 SIYGEPFKDEFHSRLRFNRRGLVGMANAGDDSNGSQFFFTLDKADELNNKHTLFGKVTGDTIYNLLKLAEVETDKDERPV  149 (171)
T ss_pred             ccCCCccCcccccCcCCCCCcEEEECcCCCCCcccEEEEEcCCCcccCCCceEEEEEEECcHHHHHHHhcCCcCCCCCcC
Confidence            999999999866 5789999999999999999999999999999999999999999994 57889999999999889999


Q ss_pred             cceEEeeeeeeCCCCCCCC
Q 021445          163 ADVTITDCGEIPEGADDGI  181 (312)
Q Consensus       163 ~~i~I~~~g~l~~~~~~~~  181 (312)
                      .+|+|.+|+++.+||++-.
T Consensus       150 ~~i~I~~~~i~~~pf~~~~  168 (171)
T cd01925         150 YPPKITSVEVLENPFDDIV  168 (171)
T ss_pred             CCeEEEEEEEEcCCchhhc
Confidence            9999999999998887743

C. elegans CeCYP-16, compared to the archetypal cyclophilin Human cyclophilin A has, a reduced peptidylprolyl cis- trans isomerase activity, is cyclosporin insensitive and shows an altered substrate preference favoring, hydrophobic, acidic or amide amino acids. Most members of this subfamily have a glutamate residue in the active site at the position equivalent to a tryptophan (W121 in Human cyclophilin A), which has been shown to be important for cyclophilin binding.

>KOG0883 consensus Cyclophilin type, U box-containing peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=8.7e-42  Score=299.61  Aligned_cols=158  Identities=44%  Similarity=0.781  Sum_probs=148.8

Q ss_pred             EEEEEECCeeeeEEEEEEeCCCCchhHHhHHHHhhCCCCCCCCCCCCceecCCEEEEeecCCeEEeCCCCCCCCCCCCcc
Q 021445            7 FLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRVIKGFMIQGGDISAGDGTGGESI   86 (312)
Q Consensus         7 ~~d~~~~~~~~G~i~ieL~~~~aP~~~~nF~~l~~~~~~~~~~~~~~~~Y~g~~~~rv~~~~~iq~G~~~~~~~~~~~~~   86 (312)
                      |..+.   ++.|.|-|||+.|.+|++|+||+.||..+           ||+|+.|||.|.+||||||||+ +.|.|+.||
T Consensus       279 yvrl~---Tn~G~lNlELhcd~~P~aceNFI~lc~~g-----------YYnnt~FHRsIrnFmiQGGDPT-GTG~GGeSi  343 (518)
T KOG0883|consen  279 YVRLV---TNHGPLNLELHCDYAPRACENFITLCKNG-----------YYNNTIFHRSIRNFMIQGGDPT-GTGRGGESI  343 (518)
T ss_pred             eEEEe---ccCCceeeEeecCcchHHHHHHHHHHhcc-----------cccchHHHHHHHHHeeeCCCCC-CCCCCCccc
Confidence            44444   45899999999999999999999999998           9999999999999999999987 899999999


Q ss_pred             cCCCCCCCcc-cccCCCcceEEeecCCCCCCCceEEEecCCCCCCCCCCceEEEEEeChHHHHHHhcccCCCCCCcccce
Q 021445           87 YGLKFEDENF-ELKHERKGMLSMANAGPNTNGSQFFITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADV  165 (312)
Q Consensus        87 ~~~~~~~e~~-~~~~~~~G~l~~~~~~~~~~~sqF~I~~~~~~~ld~~~~vfG~V~~G~~vl~~i~~~~~~~~~~P~~~i  165 (312)
                      +|.+|.||.. .+.|..||+||||++|||+|||||||+..+..+||++|++||+|+.|+++|.+|++++++++++|..+|
T Consensus       344 WgKpFkDEf~~~l~H~gRGvlSMANsGpnTNgSQFFItyrsckhLd~KHTIFGrvVGGldtL~amEnve~d~~DrP~e~I  423 (518)
T KOG0883|consen  344 WGKPFKDEFCSNLSHDGRGVLSMANSGPNTNGSQFFITYRSCKHLDNKHTIFGRVVGGLDTLTAMENVETDEKDRPKEEI  423 (518)
T ss_pred             cCCccccccCCCCCcCCcceEeeccCCCCCCCceEEEEecchhhccccceeeeeeeccHHHHHHHhcCCCCCCCCcccce
Confidence            9999999975 899999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEeeeeeeCCCCCC
Q 021445          166 TITDCGEIPEGADD  179 (312)
Q Consensus       166 ~I~~~g~l~~~~~~  179 (312)
                      +|.+..|..+|++.
T Consensus       424 ~i~~~~VFVdPfeE  437 (518)
T KOG0883|consen  424 KIEDAIVFVDPFEE  437 (518)
T ss_pred             EEeeeEEeeCcHHH
Confidence            99999998666544

>PRK10903 peptidyl-prolyl cis-trans isomerase A (rotamase A); Provisional

Probab=100.00  E-value=1.4e-39  Score=272.77  Aligned_cols=153  Identities=32%  Similarity=0.520  Sum_probs=133.4

Q ss_pred             CCeEEEEEEECCeeeeEEEEEEeCCCCchhHHhHHHHhhCCCCCCCCCCCCceecCCEEEEeecCCeEEeCCCCCCCCCC
Q 021445            3 RPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRVIKGFMIQGGDISAGDGTG   82 (312)
Q Consensus         3 ~~~v~~d~~~~~~~~G~i~ieL~~~~aP~~~~nF~~l~~~~~~~~~~~~~~~~Y~g~~~~rv~~~~~iq~G~~~~~~~~~   82 (312)
                      +++|.|+++     .|+|+||||.+.||++|+||++||+.+           ||+|+.||||+|+|+||||++....+  
T Consensus        28 ~~~v~l~T~-----~G~i~ieL~~~~aP~t~~NF~~L~~~g-----------~Ydg~~FhRvi~~f~iQgG~~~~~~~--   89 (190)
T PRK10903         28 DPHVLLTTS-----AGNIELELNSQKAPVSVKNFVDYVNSG-----------FYNNTTFHRVIPGFMIQGGGFTEQMQ--   89 (190)
T ss_pred             CcEEEEEec-----cccEEEEEeCCCCcHHHHHHHHHHhcC-----------CcCCcEEEEEeCCceEEeCCcCCCCC--
Confidence            567777766     899999999999999999999999987           99999999999999999999764322  


Q ss_pred             CCcccCCCCCCCcccccCCCcceEEeecCC-CCCCCceEEEecCCCCCCCC-----CCceEEEEEeChHHHHHHhcccCC
Q 021445           83 GESIYGLKFEDENFELKHERKGMLSMANAG-PNTNGSQFFITTTRTSHLDG-----KHVVFGRVIKGMGVVRSIEHVMTG  156 (312)
Q Consensus        83 ~~~~~~~~~~~e~~~~~~~~~G~l~~~~~~-~~~~~sqF~I~~~~~~~ld~-----~~~vfG~V~~G~~vl~~i~~~~~~  156 (312)
                       ...++.++.+|.....|+.+|+|+|++.+ +++++|||||++++.++||+     +|+|||+|++||+||++|+.++++
T Consensus        90 -~~~~~~~~~~e~~~~l~~~~G~lama~~~~~~sn~SQFfIt~~~~~~ld~~~~dg~ytvFG~V~eG~dvl~~I~~~~~~  168 (190)
T PRK10903         90 -QKKPNPPIKNEADNGLRNTRGTIAMARTADKDSATSQFFINVADNAFLDHGQRDFGYAVFGKVVKGMDVADKISQVPTH  168 (190)
T ss_pred             -CCCCCCcccCcccccCcCCCcEEEeCCCCCCCCcccEEEEECcCcccccCCccCCCccEEEEEecCHHHHHHHHcCCCC
Confidence             12235677888655567789999999876 89999999999999999984     899999999999999999999997


Q ss_pred             C----CCCcccceEEeeeeeeC
Q 021445          157 D----NDCPIADVTITDCGEIP  174 (312)
Q Consensus       157 ~----~~~P~~~i~I~~~g~l~  174 (312)
                      .    +++|..+|.|.+|++++
T Consensus       169 ~~~~~~~~P~~~v~I~~~~v~~  190 (190)
T PRK10903        169 DVGPYQNVPSKPVVILSAKVLP  190 (190)
T ss_pred             CCCCCCCcccCCeEEEEEEEeC
Confidence            6    47999999999999874

>KOG0884 consensus Similar to cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=3.3e-40  Score=245.24  Aligned_cols=151  Identities=48%  Similarity=0.759  Sum_probs=143.8

Q ss_pred             eeeEEEEEEeCCCCchhHHhHHHHhhCCCCCCCCCCCCceecCCEEEEeecCCeEEeCCCCCCCCCCCCcccCCCCCCCc
Q 021445           16 LEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRVIKGFMIQGGDISAGDGTGGESIYGLKFEDEN   95 (312)
Q Consensus        16 ~~G~i~ieL~~~~aP~~~~nF~~l~~~~~~~~~~~~~~~~Y~g~~~~rv~~~~~iq~G~~~~~~~~~~~~~~~~~~~~e~   95 (312)
                      ..|+|.||||.+.+|++|+||+.||...           ||++++|||-+|+|++|+||++ .+|.|+.+|+|.+|+||.
T Consensus         8 ~~gdikiev~~e~tpktce~~l~~~~~~-----------~~n~~~~~~~~~~f~v~~~~~~-~tgrgg~siwg~~fede~   75 (161)
T KOG0884|consen    8 DVGDIKIEVFCERTPKTCENFLALCASD-----------YYNGCIFHRNIKGFMVQTGDPT-HTGRGGNSIWGKKFEDEY   75 (161)
T ss_pred             ccCcEEEEEEecCChhHHHHHHHHhhhh-----------hccceeecCCCCCcEEEeCCCC-CCCCCCccccCCcchHHH
Confidence            3799999999999999999999999998           9999999999999999999987 689999999999999997


Q ss_pred             c-cccCCCcceEEeecCCCCCCCceEEEecCCCCCCCCCCceEEEEEeChHHHHHHhcccCCCC-CCcccceEEeeeeee
Q 021445           96 F-ELKHERKGMLSMANAGPNTNGSQFFITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDN-DCPIADVTITDCGEI  173 (312)
Q Consensus        96 ~-~~~~~~~G~l~~~~~~~~~~~sqF~I~~~~~~~ld~~~~vfG~V~~G~~vl~~i~~~~~~~~-~~P~~~i~I~~~g~l  173 (312)
                      . -++|+.||.|||++.||++++||||||.+..|+||-+|+|||+||+|++.|+.|+.+|+++. .+|..++.|.+..+-
T Consensus        76 ~~~lkh~~rg~vsmanngp~tn~sqffity~kq~hldmkytvfgkvidg~etldele~l~v~~ktyrpl~~~~ik~itih  155 (161)
T KOG0884|consen   76 SEYLKHNVRGVVSMANNGPNTNGSQFFITYGKQPHLDMKYTVFGKVIDGLETLDELEKLPVNEKTYRPLNDVHIKDITIH  155 (161)
T ss_pred             HHHHhhccceeEEcccCCCCCCCceEEEEecCCCccceeEeeeeeeccchhhHHHHhhcccCccccccchheeeeeeEEe
Confidence            6 69999999999999999999999999999999999999999999999999999999999886 899999999999988


Q ss_pred             CCCCC
Q 021445          174 PEGAD  178 (312)
Q Consensus       174 ~~~~~  178 (312)
                      ..|+.
T Consensus       156 anp~a  160 (161)
T KOG0884|consen  156 ANPFA  160 (161)
T ss_pred             cCcCC
Confidence            76664

>PRK10791 peptidyl-prolyl cis-trans isomerase B (rotamase B); Provisional

Probab=100.00  E-value=2.5e-38  Score=259.51  Aligned_cols=145  Identities=34%  Similarity=0.584  Sum_probs=124.2

Q ss_pred             eeeeEEEEEEeCCCCchhHHhHHHHhhCCCCCCCCCCCCceecCCEEEEeecCCeEEeCCCCCCCCCCCCcccCCCCCCC
Q 021445           15 ELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRVIKGFMIQGGDISAGDGTGGESIYGLKFEDE   94 (312)
Q Consensus        15 ~~~G~i~ieL~~~~aP~~~~nF~~l~~~~~~~~~~~~~~~~Y~g~~~~rv~~~~~iq~G~~~~~~~~~~~~~~~~~~~~e   94 (312)
                      |+.|+|+|+||.+.||++|+||++||+.+           ||+++.||||+|+|+||||++..+.+.   ..++.++.+|
T Consensus         6 T~~G~i~ieL~~~~aP~t~~nF~~L~~~g-----------~Yd~~~fhRvi~~f~iQgGd~~~~~~~---~~~~~~~~~e   71 (164)
T PRK10791          6 TNHGDIVIKTFDDKAPETVKNFLDYCREG-----------FYNNTIFHRVINGFMIQGGGFEPGMKQ---KATKEPIKNE   71 (164)
T ss_pred             EccccEEEEEeCCCCcHHHHHHHHHHhcC-----------CcCCcEEEEEecCcEEEeCCcCCCCCc---CCCCCCcCCc
Confidence            44899999999999999999999999987           999999999999999999997543322   2235567777


Q ss_pred             cccccCCCcceEEeecCC-CCCCCceEEEecCCCCCCC-------C-CCceEEEEEeChHHHHHHhcccCCCC----CCc
Q 021445           95 NFELKHERKGMLSMANAG-PNTNGSQFFITTTRTSHLD-------G-KHVVFGRVIKGMGVVRSIEHVMTGDN----DCP  161 (312)
Q Consensus        95 ~~~~~~~~~G~l~~~~~~-~~~~~sqF~I~~~~~~~ld-------~-~~~vfG~V~~G~~vl~~i~~~~~~~~----~~P  161 (312)
                      .....|+.+|+|||++.+ |++++|||||++++.++||       + +|+|||+|++||++|++|+.++++..    ++|
T Consensus        72 ~~~~~~~~~G~lsma~~~~p~s~~SQFfI~~~~~~~ld~~~~~~d~~~~tvFG~V~eG~dvl~~I~~~~~~~~~~~~~~P  151 (164)
T PRK10791         72 ANNGLKNTRGTLAMARTQAPHSATAQFFINVVDNDFLNFSGESLQGWGYCVFAEVVEGMDVVDKIKGVATGRSGMHQDVP  151 (164)
T ss_pred             ccccccCCCcEEEECCCCCcCCccceEEEEecCchhhcccccccCCCCccEEEEEecCHHHHHHHHcCcCCCCCccCCCc
Confidence            544444579999999886 9999999999999988776       3 79999999999999999999999763    699


Q ss_pred             ccceEEeeeeee
Q 021445          162 IADVTITDCGEI  173 (312)
Q Consensus       162 ~~~i~I~~~g~l  173 (312)
                      ..+|+|.+|.+.
T Consensus       152 ~~~v~I~~~~i~  163 (164)
T PRK10791        152 KEDVIIESVTVS  163 (164)
T ss_pred             CCCeEEEEEEEe
Confidence            999999999764

>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=1.7e-39  Score=290.43  Aligned_cols=147  Identities=55%  Similarity=0.836  Sum_probs=141.2

Q ss_pred             CeeeeEEEEEEeCCCCchhHHhHHHHhhCCCCCCCCCCCCceecCCEEEEeecCCeEEeCCCCCCCCCCCCcccCCCCCC
Q 021445           14 VELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRVIKGFMIQGGDISAGDGTGGESIYGLKFED   93 (312)
Q Consensus        14 ~~~~G~i~ieL~~~~aP~~~~nF~~l~~~~~~~~~~~~~~~~Y~g~~~~rv~~~~~iq~G~~~~~~~~~~~~~~~~~~~~   93 (312)
                      .++.|+|.|.||++.||+||+||..-|+.+           ||+|..||||+++||||+|||. ++|+|+.||+|..|+|
T Consensus       410 htt~gdi~~kl~p~ecpktvenf~th~rng-----------yy~~~~fhriik~fmiqtgdp~-g~gtggesiwg~dfed  477 (558)
T KOG0882|consen  410 HTTQGDIHIKLYPEECPKTVENFTTHSRNG-----------YYDNHTFHRIIKGFMIQTGDPL-GDGTGGESIWGKDFED  477 (558)
T ss_pred             EecccceEEEecccccchhhhhhhccccCc-----------cccCcchHHhhhhheeecCCCC-CCCCCCcccccccchh
Confidence            456899999999999999999999999987           9999999999999999999997 8999999999999999


Q ss_pred             Ccc-cccCCCcceEEeecCCCCCCCceEEEecCCCCCCCCCCceEEEEEeChHHHHHHhcccCCCCCCcccceEEeeeee
Q 021445           94 ENF-ELKHERKGMLSMANAGPNTNGSQFFITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTITDCGE  172 (312)
Q Consensus        94 e~~-~~~~~~~G~l~~~~~~~~~~~sqF~I~~~~~~~ld~~~~vfG~V~~G~~vl~~i~~~~~~~~~~P~~~i~I~~~g~  172 (312)
                      |.. .|+|+++.+||||+.|||+||||||||+.+.||||++|+|||||+.||+|+..|+++.++..++|.+++.|.+..+
T Consensus       478 efh~~lrhdrpft~smanag~ntngsqffit~~~tpwld~khtvfgrv~~gm~vvqri~~v~t~k~drp~e~v~iinisv  557 (558)
T KOG0882|consen  478 EFHPNLRHDRPFTVSMANAGPNTNGSQFFITTVPTPWLDGKHTVFGRVTAGMDVVQRIEQVKTDKYDRPYEDVKIINISV  557 (558)
T ss_pred             hcCcccccCCCceEEecccCCCCCCceEEEEecCccccCCcceeEEEEecchhHHhHhhhcccCcCCCCCCceeEEEEec
Confidence            987 7999999999999999999999999999999999999999999999999999999999999999999999998754

>cd01920 cyclophilin_EcCYP_like cyclophilin_EcCYP_like: cyclophilin-type A-like peptidylprolyl cis- trans isomerase (PPIase) domain similar to the cytosolic E

Probab=100.00  E-value=1.3e-37  Score=253.82  Aligned_cols=141  Identities=37%  Similarity=0.530  Sum_probs=122.6

Q ss_pred             eeeeEEEEEEeCCCCchhHHhHHHHhhCCCCCCCCCCCCceecCCEEEEeecCCeEEeCCCCCCCCCCCCcccCCCCCCC
Q 021445           15 ELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRVIKGFMIQGGDISAGDGTGGESIYGLKFEDE   94 (312)
Q Consensus        15 ~~~G~i~ieL~~~~aP~~~~nF~~l~~~~~~~~~~~~~~~~Y~g~~~~rv~~~~~iq~G~~~~~~~~~~~~~~~~~~~~e   94 (312)
                      |+.|+|+|+||.+.||++|+||++||+.+           ||+|+.||||+|+++||||++....+.   ..++.++.+|
T Consensus         4 T~~G~i~ieL~~~~aP~t~~nF~~L~~~g-----------~Yd~~~fhRvi~~f~iQ~Gd~~~~~~~---~~~~~~~~~e   69 (155)
T cd01920           4 TSLGDIVVELYDDKAPITVENFLAYVRKG-----------FYDNTIFHRVISGFVIQGGGFTPDLAQ---KETLKPIKNE   69 (155)
T ss_pred             ecceeEEEEEeCCCCcHHHHHHHHHHhcC-----------CCCCCEEEEEeCCcEEEeCCCCCCCCc---cccCCcccCc
Confidence            45899999999999999999999999987           999999999999999999998643322   2235567777


Q ss_pred             cccccCCCcceEEeecCC-CCCCCceEEEecCCCCCCCC-----CCceEEEEEeChHHHHHHhcccCCCC----CCcccc
Q 021445           95 NFELKHERKGMLSMANAG-PNTNGSQFFITTTRTSHLDG-----KHVVFGRVIKGMGVVRSIEHVMTGDN----DCPIAD  164 (312)
Q Consensus        95 ~~~~~~~~~G~l~~~~~~-~~~~~sqF~I~~~~~~~ld~-----~~~vfG~V~~G~~vl~~i~~~~~~~~----~~P~~~  164 (312)
                      .....|+++|+|+|++.+ +++++|||||++++.++||+     +|+|||+|++||+||++|+.++++..    +.|..+
T Consensus        70 ~~~~~~~~~G~v~ma~~~~~~s~~SqFfI~~~~~~~ld~~~~~~~ytvFG~V~eG~dvl~~I~~~~~~~~~~~~~~p~~~  149 (155)
T cd01920          70 AGNGLSNTRGTIAMARTNAPDSATSQFFINLKDNASLDYQNEQWGYTVFGEVTEGMDVVDKIAGVETYSFGSYQDVPVQD  149 (155)
T ss_pred             ccccccCCceEEEECCCCCCCCccceEEEECCCchhcCCcccCCCccEEEEEecCHHHHHHHHcCCccCCCCcCCCcCCC
Confidence            655566789999999876 89999999999999999995     79999999999999999999999764    588888


Q ss_pred             eEEee
Q 021445          165 VTITD  169 (312)
Q Consensus       165 i~I~~  169 (312)
                      |.|.+
T Consensus       150 v~i~~  154 (155)
T cd01920         150 VIIES  154 (155)
T ss_pred             eEEEE
Confidence            88875

coli cyclophilin A and Streptomyces antibioticus SanCyp18. Compared to the archetypal cyclophilin Human cyclophilin A, these have reduced affinity for cyclosporin A. E. coli cyclophilin A has a similar peptidylprolyl cis- trans isomerase activity to the human cyclophilin A. Most members of this subfamily contain a phenylalanine residue at the position equivalent to Human cyclophilin W121, where a tyrptophan has been shown to be important for cyclophilin binding.

>KOG0865 consensus Cyclophilin type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=2.6e-38  Score=255.64  Aligned_cols=164  Identities=61%  Similarity=1.034  Sum_probs=154.8

Q ss_pred             CCCCeEEEEEEECCeeeeEEEEEEeCCCCchhHHhHHHHhhCCCCCCCCCCCCceecCCEEEE---eecCCeEEeCCCCC
Q 021445            1 MARPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHR---VIKGFMIQGGDISA   77 (312)
Q Consensus         1 ~~~~~v~~d~~~~~~~~G~i~ieL~~~~aP~~~~nF~~l~~~~~~~~~~~~~~~~Y~g~~~~r---v~~~~~iq~G~~~~   77 (312)
                      |.+|.||||++++++++|+++++||.+..|+|++||..||++.++.+        |.++.|||   .++++++||||.+.
T Consensus         1 ~~~~~vf~d~~~~~~p~gr~~~~l~ad~~Pktaenf~al~tgekg~~--------yk~s~fhr~~~~~~~fm~qggDft~   72 (167)
T KOG0865|consen    1 MVNPTVFFDIAIDGEPLGRIVFELFADKIPKTAENFRALCTGEKGFG--------YKGSCFHRLIPIIPGFMCQGGDFTC   72 (167)
T ss_pred             CCCCeeeeeeeecCccccccceecccccCcchHhhhhhcccCCCccc--------cccchhhhccccccceeeccCcccc
Confidence            78999999999999999999999999999999999999999877665        99999999   34479999999999


Q ss_pred             CCCCCCCcccCCCCCCCcccccCCCcceEEeecCCCCCCCceEEEecCCCCCCCCCCceEEEEEeChHHHHHHhcccCCC
Q 021445           78 GDGTGGESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFFITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGD  157 (312)
Q Consensus        78 ~~~~~~~~~~~~~~~~e~~~~~~~~~G~l~~~~~~~~~~~sqF~I~~~~~~~ld~~~~vfG~V~~G~~vl~~i~~~~~~~  157 (312)
                      .+|+++.++|+++|+||++.++|..+|.|+|++.||++++|||||++....|||++|+|||+|.+||+++++|+.....+
T Consensus        73 hngtggkSiy~ekF~DenFilkhtgpGiLSmaNagpntngsqffictaktewLdgkhVVfGkv~eGm~iv~a~e~~gs~~  152 (167)
T KOG0865|consen   73 HNGTGGKSIYGEKFDDENFILKHTGPGILSMANAGPNTNGSQFFICTAKTEWLDGKHVVFGKVKEGMDIVEAMERFGSRN  152 (167)
T ss_pred             cCCccceEecccccCCcCcEEecCCCCeeehhhcCCCccccEEEEEccccccccCceeEcCceEcccchhhhhhccCCcC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999965544


Q ss_pred             CCCcccceEEeeeeee
Q 021445          158 NDCPIADVTITDCGEI  173 (312)
Q Consensus       158 ~~~P~~~i~I~~~g~l  173 (312)
                       +++...|.|.+||.+
T Consensus       153 -gk~~~~i~i~dcg~l  167 (167)
T KOG0865|consen  153 -GKTSKKITIADCGQL  167 (167)
T ss_pred             -CcccccEEEecCCcC
Confidence             899999999999975

>PF00160 Pro_isomerase: Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD; InterPro: IPR002130 Cyclophilin [] is the major high-affinity binding protein in vertebrates for the immunosuppressive drug cyclosporin A (CSA), but is also found in other organisms

Probab=100.00  E-value=2.6e-36  Score=247.39  Aligned_cols=151  Identities=50%  Similarity=0.839  Sum_probs=131.2

Q ss_pred             EEEEEECCeeeeEEEEEEeCCCCchhHHhHHHHhhCCCCCCCCCCCCceecCCEEEEeecCCeEEeCCCCCCCCCCC-Cc
Q 021445            7 FLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRVIKGFMIQGGDISAGDGTGG-ES   85 (312)
Q Consensus         7 ~~d~~~~~~~~G~i~ieL~~~~aP~~~~nF~~l~~~~~~~~~~~~~~~~Y~g~~~~rv~~~~~iq~G~~~~~~~~~~-~~   85 (312)
                      ||+|+.++  .|+|+||||++.||++|+||++||+.+           +|+|+.|||++|+++||+|++....+.+. ..
T Consensus         1 ~~~i~t~~--~G~i~ieL~~~~aP~~~~nF~~l~~~~-----------~y~g~~f~ri~~~~~i~~G~~~~~~~~~~~~~   67 (155)
T PF00160_consen    1 FVDIETSG--LGRIVIELFGDEAPKTVENFLRLCTSG-----------FYDGTKFHRIIPNFVIQGGDPTGNGGYGREDS   67 (155)
T ss_dssp             EEEEEETT--EEEEEEEEETTTSHHHHHHHHHHHHTT-----------SSTTEBEEEEETTTEEEESSTTTSSSSTSEEB
T ss_pred             CEEEEeCC--ccCEEEEEeCCCCcHHHHhhehhhccc-----------ccCCceeecccccceeeeeeccCCCCcccccc
Confidence            78898765  999999999999999999999999987           89999999999999999999865433111 12


Q ss_pred             ccCCCCCCCcc-cccCCCcceEEeecCC--CCCCCceEEEecCCCCCCCCCCceEEEEEeChHHHHHHhcccCCCCCCcc
Q 021445           86 IYGLKFEDENF-ELKHERKGMLSMANAG--PNTNGSQFFITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPI  162 (312)
Q Consensus        86 ~~~~~~~~e~~-~~~~~~~G~l~~~~~~--~~~~~sqF~I~~~~~~~ld~~~~vfG~V~~G~~vl~~i~~~~~~~~~~P~  162 (312)
                      ..+.++++|.. ...++++|+|+|++.+  +++++|||||+|++.+++|++|+|||+|++||++|++|+..+++.  +|.
T Consensus        68 ~~~~~~~~E~~~~~~~~~~G~v~~~~~~~~~~~~~sqF~I~l~~~~~ld~~~~vfG~V~~G~~vl~~i~~~~~~~--~p~  145 (155)
T PF00160_consen   68 TGGEPIPDEFNPSLLKHRRGLVSMARSGKDPNSNGSQFFITLSDAPHLDGKYTVFGRVIEGMDVLDKIEAGPTDE--RPK  145 (155)
T ss_dssp             TTBSCBSSSGBTTSSSSSTTEEEEEBSSSSTTEBSSEEEEESSCGGGGTTTSEEEEEEEEHHHHHHHHHTSBBTT--EBS
T ss_pred             cCccccccccccccccccceeeeecccccCCCCCCceEEeeccCCCccccceeeeeEEehhHHHHHHHHCCCCCC--ccC
Confidence            23446788874 3344489999999986  889999999999999999999999999999999999999998877  999


Q ss_pred             cceEEeeeee
Q 021445          163 ADVTITDCGE  172 (312)
Q Consensus       163 ~~i~I~~~g~  172 (312)
                      ++|+|.+|||
T Consensus       146 ~~v~I~~cgv  155 (155)
T PF00160_consen  146 QDVTISSCGV  155 (155)
T ss_dssp             STEEEEEEEE
T ss_pred             CCeEEEEeEC
Confidence            9999999997

It exhibits a peptidyl-prolyl cis-trans isomerase activity (5.2.1.8 from EC) (PPIase or rotamase). PPIase is an enzyme that accelerates protein folding by catalysing the cis-trans isomerisation of proline imidic peptide bonds in oligopeptides []. It is probable that CSA mediates some of its effects via an forming a tight complex with cyclophilin that inhibits the phosphatase activity of calcineurin [], []. Cyclophilin A is a cytosolic and highly abundant protein. The protein belongs to a family of isozymes, including cyclophilins B and C, and natural killer cell cyclophilin-related protein [, , ]. Major isoforms have been found throughout the cell, including the ER, and some are even secreted. The sequences of the different forms of cyclophilin-type PPIases are well conserved. Note: FKBP's, a family of proteins that bind the immunosuppressive drug FK506, are also PPIases, but their sequence is not at all related to that of cyclophilin (see IPR001179 from INTERPRO).; GO: 0003755 peptidyl-prolyl cis-trans isomerase activity, 0006457 protein folding; PDB: 1Z81_A 1IHG_A 1IIP_A 3PMP_B 3O7T_A 2B71_A 1QNG_A 1QNH_A 2HQJ_A 2RMC_G ....

>cd00317 cyclophilin cyclophilin: cyclophilin-type peptidylprolyl cis- trans isomerases

Probab=100.00  E-value=2.4e-36  Score=245.14  Aligned_cols=142  Identities=62%  Similarity=0.973  Sum_probs=128.4

Q ss_pred             eeeeEEEEEEeCCCCchhHHhHHHHhhCCCCCCCCCCCCceecCCEEEEeecCCeEEeCCCCCCCCCCCCcccCCCCCCC
Q 021445           15 ELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRVIKGFMIQGGDISAGDGTGGESIYGLKFEDE   94 (312)
Q Consensus        15 ~~~G~i~ieL~~~~aP~~~~nF~~l~~~~~~~~~~~~~~~~Y~g~~~~rv~~~~~iq~G~~~~~~~~~~~~~~~~~~~~e   94 (312)
                      ++.|+|+|+||.+.||++|+||++||+++           +|+|+.|||++|+++||+|++..+.+.+  +.++..+++|
T Consensus         4 T~~G~i~IeL~~~~~P~~~~nF~~l~~~~-----------~Y~~~~f~rv~~~~~iq~Gd~~~~~~~~--~~~~~~~~~E   70 (146)
T cd00317           4 TTKGRIVIELYGDEAPKTVENFLSLARGG-----------FYDGTTFHRVIPGFMIQGGDPTGTGGGG--SGPGYKFPDE   70 (146)
T ss_pred             eccCcEEEEEcCCCChHHHHHHHHHHhcC-----------CcCCCEEEEEeCCCeEEECCCCCCCCCC--CcCCCccCCc
Confidence            34799999999999999999999999998           8999999999999999999986543322  3557778888


Q ss_pred             ccccc-CCCcceEEeecCCCCCCCceEEEecCCCCCCCCCCceEEEEEeChHHHHHHhcccCCCCCCcccceEEee
Q 021445           95 NFELK-HERKGMLSMANAGPNTNGSQFFITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTITD  169 (312)
Q Consensus        95 ~~~~~-~~~~G~l~~~~~~~~~~~sqF~I~~~~~~~ld~~~~vfG~V~~G~~vl~~i~~~~~~~~~~P~~~i~I~~  169 (312)
                      ..... |+++|+|+|++.++++++|||||++++.++||++|+|||+|++||++|++|+..+++++++|..+|+|.+
T Consensus        71 ~~~~~~~~~~G~v~~~~~~~~~~~sqF~Itl~~~~~ld~~~~vfG~V~~G~~vl~~I~~~~~~~~~~P~~~i~I~~  146 (146)
T cd00317          71 NFPLKYHHRRGTLSMANAGPNTNGSQFFITTAPTPHLDGKHTVFGKVVEGMDVVDKIERGDTDENGRPIKPVTISD  146 (146)
T ss_pred             cccCcCcCCCcEEEEeeCCCCCcccEEEEECCCCcccCCCceEEEEEeCCHHHHHHHHcCCCCCCCcCcCceEEeC
Confidence            87655 8899999999999999999999999999999999999999999999999999999998899999999963

This family contains eukaryotic, bacterial and archeal proteins which exhibit a peptidylprolyl cis- trans isomerases activity (PPIase, Rotamase) and in addition bind the immunosuppressive drug cyclosporin (CsA). Immunosuppression in vertebrates is believed to be the result of the cyclophilin A-cyclosporin protein drug complex binding to and inhibiting the protein-phosphatase calcineurin. PPIase is an enzyme which accelerates protein folding by catalyzing the cis-trans isomerization of the peptide bonds preceding proline residues. Cyclophilins are a diverse family in terms of function and have been implicated in protein folding processes which depend on catalytic /chaperone-like activities. This group contains human cyclophilin 40, a co-chaperone of the hsp90 chaperone system; human cyclophilin A, a chaperone in the HIV-1 infectious process and; human cyclophilin H, a component of the U4/U6 snRNP

>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=7.9e-36  Score=259.32  Aligned_cols=155  Identities=39%  Similarity=0.645  Sum_probs=144.2

Q ss_pred             eeeeEEEEEEeCCCCchhHHhHHHHhhCCCCCCCCCCCCceecCCEEEEeecCCeEEeCCCCCCCCCCCCcccCCC----
Q 021445           15 ELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRVIKGFMIQGGDISAGDGTGGESIYGLK----   90 (312)
Q Consensus        15 ~~~G~i~ieL~~~~aP~~~~nF~~l~~~~~~~~~~~~~~~~Y~g~~~~rv~~~~~iq~G~~~~~~~~~~~~~~~~~----   90 (312)
                      |++|+|||+||.+.+|.+|.||++||+-+           ||+.|.||.|..+|.+|.|||+ +.|.||.+||+..    
T Consensus         7 TtlGDlvIDLf~~erP~~clNFLKLCk~K-----------YYN~clfh~vq~~f~aQTGDPt-GtG~GG~si~~~lyG~q   74 (479)
T KOG0415|consen    7 TTLGDLVIDLFVKERPRTCLNFLKLCKIK-----------YYNFCLFHTVQRDFTAQTGDPT-GTGDGGESIYGVLYGEQ   74 (479)
T ss_pred             eecccEEeeeecccCcHHHHHHHHHHhHh-----------hcccceeeeccccceeecCCCC-CCCCCcceeeeeccccc
Confidence            33899999999999999999999999998           9999999999999999999997 6999999998653    


Q ss_pred             ---CCCCcc-cccCCCcceEEeecCCCCCCCceEEEecCCC-CCCCCCCceEEEEEeChHHHHHHhcccCCCCCCcccce
Q 021445           91 ---FEDENF-ELKHERKGMLSMANAGPNTNGSQFFITTTRT-SHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADV  165 (312)
Q Consensus        91 ---~~~e~~-~~~~~~~G~l~~~~~~~~~~~sqF~I~~~~~-~~ld~~~~vfG~V~~G~~vl~~i~~~~~~~~~~P~~~i  165 (312)
                         |+.|.. .++|.+.|+|||++.|.+.+||||||||+.+ ..||++|+|||+|++|+++|.+|+..-++.+.+|.++|
T Consensus        75 ~rffeaE~~p~l~Hsk~G~vsmvs~g~n~~gSQF~iTlgenLdyLDg~htvfGqV~EG~dtl~kiNea~vD~~~rPykdI  154 (479)
T KOG0415|consen   75 ARFFEAEFLPKLKHSKMGTVSMVSAGENLNGSQFFITLGENLDYLDGKHTVFGQVAEGFDTLTKINEAIVDPKNRPYKDI  154 (479)
T ss_pred             chhhhhhhcccccccccceEEeecCCcccccceEEEEccccccccccccceeeehhhhHHHHHHHHHHhcCCCCCcccce
Confidence               555654 7999999999999999999999999999975 69999999999999999999999999999999999999


Q ss_pred             EEeeeeeeCCCCCCCC
Q 021445          166 TITDCGEIPEGADDGI  181 (312)
Q Consensus       166 ~I~~~g~l~~~~~~~~  181 (312)
                      +|++.-+|.+||++|.
T Consensus       155 RI~HTiiLdDPFddpp  170 (479)
T KOG0415|consen  155 RIKHTIILDDPFDDPP  170 (479)
T ss_pred             eeeeeEEecCCCCCch
Confidence            9999999999999864

>KOG0885 consensus Peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=2.8e-36  Score=263.99  Aligned_cols=162  Identities=38%  Similarity=0.667  Sum_probs=150.2

Q ss_pred             eEEEEEEECCeeeeEEEEEEeCCCCchhHHhHHHHhhCCCCCCCCCCCCceecCCEEEEeecCCeEEeCCCCCCCCCCCC
Q 021445            5 RCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRVIKGFMIQGGDISAGDGTGGE   84 (312)
Q Consensus         5 ~v~~d~~~~~~~~G~i~ieL~~~~aP~~~~nF~~l~~~~~~~~~~~~~~~~Y~g~~~~rv~~~~~iq~G~~~~~~~~~~~   84 (312)
                      .|.+.++     .|+|.||||...||++|.||++||..+           ||+|+.|||++|+|++|||||. ++|+|+.
T Consensus        14 kvil~TT-----~G~I~iELW~kE~P~acrnFiqKOGeg-----------yy~nt~fhrlvp~f~~Qggdp~-~~gtGge   76 (439)
T KOG0885|consen   14 KVILKTT-----KGDIDIELWAKECPKACRNFIQLCLEG-----------YYDNTEFHRLVPGFLVQGGDPT-GTGTGGE   76 (439)
T ss_pred             eEEEEec-----cCceeeeehhhhhhHHHHHHHHHHHhc-----------cccCceeeeeccchhcccCCCC-CCCCCcc
Confidence            3445544     799999999999999999999999998           9999999999999999999986 7899999


Q ss_pred             cccCCCCCCCcc-cccCCCcceEEeecCCCCCCCceEEEecCCCCCCCCCCceEEEEEe-ChHHHHHHhcccCCCCCCcc
Q 021445           85 SIYGLKFEDENF-ELKHERKGMLSMANAGPNTNGSQFFITTTRTSHLDGKHVVFGRVIK-GMGVVRSIEHVMTGDNDCPI  162 (312)
Q Consensus        85 ~~~~~~~~~e~~-~~~~~~~G~l~~~~~~~~~~~sqF~I~~~~~~~ld~~~~vfG~V~~-G~~vl~~i~~~~~~~~~~P~  162 (312)
                      +|||.+|.+|.. .++++++|+|+|++.+.+.||||||+||++.|++++++++||+|+. -+-.+.+|..+.++.+.+|.
T Consensus        77 siyg~~fadE~h~Rlrf~rrGlvgmana~~~~ngsqFfftl~~~~el~nk~tiFGKVtGdtIYn~lri~e~eida~~Rp~  156 (439)
T KOG0885|consen   77 SIYGRPFADEFHPRLRFNRRGLVGMANAGNDDNGSQFFFTLGDTPELNNKHTIFGKVTGDTIYNMLRISEVEIDADDRPV  156 (439)
T ss_pred             ccccccchhhcCcceeeeccceeeecccCCCCCCceEEEEecCChHhcccCceeeeecchhhhhhhhhcccccccccCCC
Confidence            999999999976 7999999999999999999999999999999999999999999995 57778899999999999999


Q ss_pred             cceEEeeeeeeCCCCCCCCCc
Q 021445          163 ADVTITDCGEIPEGADDGISN  183 (312)
Q Consensus       163 ~~i~I~~~g~l~~~~~~~~~~  183 (312)
                      .+-.|.+|.|+-.||+|..+.
T Consensus       157 ~p~kI~s~EV~~npFdDI~pr  177 (439)
T KOG0885|consen  157 DPPKIKSVEVLINPFDDIKPR  177 (439)
T ss_pred             CccceeeeEeecCchhhcchh
Confidence            999999999999999986554

>cd01924 cyclophilin_TLP40_like cyclophilin_TLP40_like: cyclophilin-type peptidylprolyl cis- trans isomerases (cyclophilins) similar ot the Spinach thylakoid lumen protein TLP40

Probab=100.00  E-value=3.5e-35  Score=243.47  Aligned_cols=129  Identities=35%  Similarity=0.572  Sum_probs=109.8

Q ss_pred             CeeeeEEEEEEeCCCCchhHHhHHHHhhCCCCCCCCCCCCceecCCEEEEeecCCeEEeCCCCCCC-C------------
Q 021445           14 VELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRVIKGFMIQGGDISAGD-G------------   80 (312)
Q Consensus        14 ~~~~G~i~ieL~~~~aP~~~~nF~~l~~~~~~~~~~~~~~~~Y~g~~~~rv~~~~~iq~G~~~~~~-~------------   80 (312)
                      .|+.|+|+|+||++.||++|.||++||+.+           ||+++.||||+|+|+|||||+.... +            
T Consensus         3 ~T~~G~i~ieL~~~~aP~t~~NF~~L~~~g-----------~Ydg~~FhRVi~~fviQgGdp~~~~~~~~~~~~~~~~~~   71 (176)
T cd01924           3 ATDNGTITIVLDGYNAPVTAGNFVDLVERG-----------FYDGMEFHRVEGGFVVQTGDPQGKNPGFPDPETGKSRTI   71 (176)
T ss_pred             ccccceEEEEEcCCCCCHHHHHHHHHHHhC-----------CcCCCEEEEecCCcEEEecCCCCCCCCcccccccccccc
Confidence            356899999999999999999999999987           9999999999999999999986431 0            


Q ss_pred             -------CCCCcccCCCCC-----CCcccccCCCcceEEeecCC--CCCCCceEEEecC-------CCCCCCCCCceEEE
Q 021445           81 -------TGGESIYGLKFE-----DENFELKHERKGMLSMANAG--PNTNGSQFFITTT-------RTSHLDGKHVVFGR  139 (312)
Q Consensus        81 -------~~~~~~~~~~~~-----~e~~~~~~~~~G~l~~~~~~--~~~~~sqF~I~~~-------~~~~ld~~~~vfG~  139 (312)
                             ..+.++++..+.     +++..+.|+.+|+|+|++.+  +++++|||||+++       +.++||++|+|||+
T Consensus        72 p~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~laMa~~~~~~ns~~SQFfI~~~~~~~~~~~~~~Ldg~ytVFG~  151 (176)
T cd01924          72 PLEIKPEGQKQPVYGKTLEEAGRYDEQPVLPFNAFGAIAMARTEFDPNSASSQFFFLLKDNELTPSRNNVLDGRYAVFGY  151 (176)
T ss_pred             cceecccCCCCCccCcccccccccccccccccCCCCeEEEccCCCCCCCccceEEEEeccccccCCCCCccCCCceEEEE
Confidence                   112234554432     44556788899999999988  6999999999998       78999999999999


Q ss_pred             EEeChHHHHHHhcc
Q 021445          140 VIKGMGVVRSIEHV  153 (312)
Q Consensus       140 V~~G~~vl~~i~~~  153 (312)
                      |++||+||++|+..
T Consensus       152 VveG~dvl~~I~~g  165 (176)
T cd01924         152 VTDGLDILRELKVG  165 (176)
T ss_pred             EecCHHHHHhhcCC
Confidence            99999999999753

Compared to the archetypal cyclophilin Human cyclophilin A, these proteins have similar peptidylprolyl cis- trans isomerase activity and reduced affinity for cyclosporin A. Spinach TLP40 has been shown to have a dual function as a folding catalyst and regulator of dephosphorylation.

>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=99.82  E-value=8.2e-20  Score=164.55  Aligned_cols=105  Identities=30%  Similarity=0.417  Sum_probs=96.7

Q ss_pred             ChhhhhhhhhhhHhhhhhHHhhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHcCCHHHH
Q 021445          204 ELSWWMNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGA  283 (312)
Q Consensus       204 ~~~~~~~~~~~~k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~A  283 (312)
                      ..+++++.|...|++||.+||+|+|..|+..|.+|+.+|++.   ...++++.......+..+|+|+|+||+||++|.+|
T Consensus       200 ~~~e~l~~A~~~ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~---~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~A  276 (397)
T KOG0543|consen  200 FAEERLEAADRKKERGNVLFKEGKFKLAKKRYERAVSFLEYR---RSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEA  276 (397)
T ss_pred             chHHHHHHHHHHHHhhhHHHhhchHHHHHHHHHHHHHHhhcc---ccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHH
Confidence            344689999999999999999999999999999999999884   45556777888999999999999999999999999


Q ss_pred             HHHHHHHHHcCCCchHHHHHHHHHhhhh
Q 021445          284 LLDTEFAMRDGDDNVKALFRQGQVSIIL  311 (312)
Q Consensus       284 i~~~~~al~l~p~~~Ka~~rrg~a~~~L  311 (312)
                      ++.|++||.++|+|+|||||||+||+.+
T Consensus       277 i~~c~kvLe~~~~N~KALyRrG~A~l~~  304 (397)
T KOG0543|consen  277 IESCNKVLELDPNNVKALYRRGQALLAL  304 (397)
T ss_pred             HHHHHHHHhcCCCchhHHHHHHHHHHhh
Confidence            9999999999999999999999999875

>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]

Probab=99.77  E-value=1.6e-18  Score=146.12  Aligned_cols=108  Identities=29%  Similarity=0.259  Sum_probs=102.7

Q ss_pred             CChhhhhhhhhhhHhhhhhHHhhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHcCCHHH
Q 021445          203 NELSWWMNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKG  282 (312)
Q Consensus       203 ~~~~~~~~~~~~~k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~  282 (312)
                      .+.++.++.+..+.++||.+|+.|+|.+|+.+|..||-+++.....+.+.+.++.+++.....+++|.|+|+++.++|-+
T Consensus       169 lsddeKmkav~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~ye  248 (329)
T KOG0545|consen  169 LSDDEKMKAVPVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYE  248 (329)
T ss_pred             CCchHhhhhhHHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHH
Confidence            34456788999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHcCCCchHHHHHHHHHhhh
Q 021445          283 ALLDTEFAMRDGDDNVKALFRQGQVSII  310 (312)
Q Consensus       283 Ai~~~~~al~l~p~~~Ka~~rrg~a~~~  310 (312)
                      ++++|+.+|..+|.|+|||||||+|+.+
T Consensus       249 vleh~seiL~~~~~nvKA~frRakAhaa  276 (329)
T KOG0545|consen  249 VLEHCSEILRHHPGNVKAYFRRAKAHAA  276 (329)
T ss_pred             HHHHHHHHHhcCCchHHHHHHHHHHHHh
Confidence            9999999999999999999999999865

>KOG4234 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.76  E-value=2.7e-18  Score=140.83  Aligned_cols=96  Identities=28%  Similarity=0.301  Sum_probs=86.9

Q ss_pred             ChhhhhhhhhhhHhhhhhHHhhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHcCCHHHH
Q 021445          204 ELSWWMNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGA  283 (312)
Q Consensus       204 ~~~~~~~~~~~~k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~A  283 (312)
                      ..+..+..+..+|.+||.+|+.|+|.+|...|+.||+++...             .....+.+|+|||+|++||+.|+.|
T Consensus        87 ek~k~~~kad~lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~-------------~~e~rsIly~Nraaa~iKl~k~e~a  153 (271)
T KOG4234|consen   87 EKDKAIEKADSLKKEGNELFKNGDYEEANSKYQEALESCPST-------------STEERSILYSNRAAALIKLRKWESA  153 (271)
T ss_pred             HHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHhCccc-------------cHHHHHHHHhhhHHHHHHhhhHHHH
Confidence            344456788999999999999999999999999999987654             4477889999999999999999999


Q ss_pred             HHHHHHHHHcCCCchHHHHHHHHHhhhhC
Q 021445          284 LLDTEFAMRDGDDNVKALFRQGQVSIILL  312 (312)
Q Consensus       284 i~~~~~al~l~p~~~Ka~~rrg~a~~~L~  312 (312)
                      |++|++||+|+|++.||+.|||.+|..++
T Consensus       154 I~dcsKaiel~pty~kAl~RRAeayek~e  182 (271)
T KOG4234|consen  154 IEDCSKAIELNPTYEKALERRAEAYEKME  182 (271)
T ss_pred             HHHHHhhHhcCchhHHHHHHHHHHHHhhh
Confidence            99999999999999999999999998763

>KOG0553 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.74  E-value=3.5e-18  Score=148.48  Aligned_cols=87  Identities=31%  Similarity=0.348  Sum_probs=83.7

Q ss_pred             hhhhhhhhhHhhhhhHHhhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHcCCHHHHHHH
Q 021445          207 WWMNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLD  286 (312)
Q Consensus       207 ~~~~~~~~~k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~  286 (312)
                      +....|+.||.+||.+++.++|++|+.+|++||+                  +.|..++.|+|||++|.+||+|+.|++|
T Consensus        76 e~~~~AE~LK~eGN~~m~~~~Y~eAv~kY~~AI~------------------l~P~nAVyycNRAAAy~~Lg~~~~AVkD  137 (304)
T KOG0553|consen   76 EDKALAESLKNEGNKLMKNKDYQEAVDKYTEAIE------------------LDPTNAVYYCNRAAAYSKLGEYEDAVKD  137 (304)
T ss_pred             hHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh------------------cCCCcchHHHHHHHHHHHhcchHHHHHH
Confidence            5677899999999999999999999999999999                  7888999999999999999999999999


Q ss_pred             HHHHHHcCCCchHHHHHHHHHhhhh
Q 021445          287 TEFAMRDGDDNVKALFRQGQVSIIL  311 (312)
Q Consensus       287 ~~~al~l~p~~~Ka~~rrg~a~~~L  311 (312)
                      |..||.+||.+.|||-|.|.||+.+
T Consensus       138 ce~Al~iDp~yskay~RLG~A~~~~  162 (304)
T KOG0553|consen  138 CESALSIDPHYSKAYGRLGLAYLAL  162 (304)
T ss_pred             HHHHHhcChHHHHHHHHHHHHHHcc
Confidence            9999999999999999999999875

>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.72  E-value=5e-18  Score=155.19  Aligned_cols=92  Identities=24%  Similarity=0.370  Sum_probs=84.2

Q ss_pred             CCChhhhhhhhhhhHhhhhhHHhhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHcCCHH
Q 021445          202 PNELSWWMNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLK  281 (312)
Q Consensus       202 ~~~~~~~~~~~~~~k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~  281 (312)
                      ....+++++.|..+|.+||.+|++|+|++||.+|++||+++                  |..+..|.|||+||..+|+|+
T Consensus       105 a~~~e~~~k~A~~lK~~GN~~f~~kkY~eAIkyY~~AI~l~------------------p~epiFYsNraAcY~~lgd~~  166 (606)
T KOG0547|consen  105 AMLKEERLKYAAALKTKGNKFFRNKKYDEAIKYYTQAIELC------------------PDEPIFYSNRAACYESLGDWE  166 (606)
T ss_pred             ccChHHHHHHHHHHHhhhhhhhhcccHHHHHHHHHHHHhcC------------------CCCchhhhhHHHHHHHHhhHH
Confidence            34556778899999999999999999999999999999953                  334779999999999999999


Q ss_pred             HHHHHHHHHHHcCCCchHHHHHHHHHhhhh
Q 021445          282 GALLDTEFAMRDGDDNVKALFRQGQVSIIL  311 (312)
Q Consensus       282 ~Ai~~~~~al~l~p~~~Ka~~rrg~a~~~L  311 (312)
                      +.+++|++||+++|.++|||+|||.||..|
T Consensus       167 ~Vied~TkALEl~P~Y~KAl~RRA~A~E~l  196 (606)
T KOG0547|consen  167 KVIEDCTKALELNPDYVKALLRRASAHEQL  196 (606)
T ss_pred             HHHHHHHHHhhcCcHHHHHHHHHHHHHHhh
Confidence            999999999999999999999999999876

>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=99.62  E-value=7e-16  Score=135.36  Aligned_cols=88  Identities=27%  Similarity=0.394  Sum_probs=80.2

Q ss_pred             hhhhhHhhhhhHHhhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHcCCHHHHHHHHHHH
Q 021445          211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA  290 (312)
Q Consensus       211 ~~~~~k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~a  290 (312)
                      .|+.+|++||.+|+.++|..|+.+|+++|..       ..       .-..+.+.+|.|||+|.+.+|+|..||.||.+|
T Consensus        80 ~Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~-------kc-------~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~a  145 (390)
T KOG0551|consen   80 QAENYKEEGNEYFKEKRYKDAVESYTEGLKK-------KC-------ADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAA  145 (390)
T ss_pred             HHHHHHHHhHHHHHhhhHHHHHHHHHHHHhh-------cC-------CCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence            7889999999999999999999999999983       11       124567889999999999999999999999999


Q ss_pred             HHcCCCchHHHHHHHHHhhhhC
Q 021445          291 MRDGDDNVKALFRQGQVSIILL  312 (312)
Q Consensus       291 l~l~p~~~Ka~~rrg~a~~~L~  312 (312)
                      |.++|++.|||||-|+|++.|+
T Consensus       146 l~~~P~h~Ka~~R~Akc~~eLe  167 (390)
T KOG0551|consen  146 LKLKPTHLKAYIRGAKCLLELE  167 (390)
T ss_pred             HhcCcchhhhhhhhhHHHHHHH
Confidence            9999999999999999999874

>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]

Probab=99.60  E-value=1.7e-15  Score=140.29  Aligned_cols=83  Identities=29%  Similarity=0.508  Sum_probs=78.9

Q ss_pred             hhhhhHhhhhhHHhhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHcCCHHHHHHHHHHH
Q 021445          211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA  290 (312)
Q Consensus       211 ~~~~~k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~a  290 (312)
                      .++..|++||.+|+.|+|..|+..|++||.                  .+|....+|+|||+||++|+++..|+.||+.+
T Consensus       357 ~A~e~r~kGne~Fk~gdy~~Av~~YteAIk------------------r~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~  418 (539)
T KOG0548|consen  357 KAEEEREKGNEAFKKGDYPEAVKHYTEAIK------------------RDPEDARLYSNRAACYLKLGEYPEALKDAKKC  418 (539)
T ss_pred             HHHHHHHHHHHHHhccCHHHHHHHHHHHHh------------------cCCchhHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence            466679999999999999999999999999                  67889999999999999999999999999999


Q ss_pred             HHcCCCchHHHHHHHHHhhhh
Q 021445          291 MRDGDDNVKALFRQGQVSIIL  311 (312)
Q Consensus       291 l~l~p~~~Ka~~rrg~a~~~L  311 (312)
                      ++++|++.|+|+|+|.|+..|
T Consensus       419 ieL~p~~~kgy~RKg~al~~m  439 (539)
T KOG0548|consen  419 IELDPNFIKAYLRKGAALRAM  439 (539)
T ss_pred             HhcCchHHHHHHHHHHHHHHH
Confidence            999999999999999999876

>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]

Probab=99.54  E-value=3e-15  Score=132.01  Aligned_cols=91  Identities=24%  Similarity=0.174  Sum_probs=83.9

Q ss_pred             ChhhhhhhhhhhHhhhhhHHhhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHcCCHHHH
Q 021445          204 ELSWWMNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGA  283 (312)
Q Consensus       204 ~~~~~~~~~~~~k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~A  283 (312)
                      -.++.+..+..+|++||.+|++|+|++||.||+++|.                  +.|.....|.|||.+|+++++|..|
T Consensus        89 I~~~LL~~~SEiKE~GN~yFKQgKy~EAIDCYs~~ia------------------~~P~NpV~~~NRA~AYlk~K~FA~A  150 (536)
T KOG4648|consen   89 IAQQLLKKASEIKERGNTYFKQGKYEEAIDCYSTAIA------------------VYPHNPVYHINRALAYLKQKSFAQA  150 (536)
T ss_pred             HHHHHHHhhHHHHHhhhhhhhccchhHHHHHhhhhhc------------------cCCCCccchhhHHHHHHHHHHHHHH
Confidence            3456677888899999999999999999999999999                  6677788999999999999999999


Q ss_pred             HHHHHHHHHcCCCchHHHHHHHHHhhhhC
Q 021445          284 LLDTEFAMRDGDDNVKALFRQGQVSIILL  312 (312)
Q Consensus       284 i~~~~~al~l~p~~~Ka~~rrg~a~~~L~  312 (312)
                      ..||+.|+.||..+.|||.|||.|...|+
T Consensus       151 E~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg  179 (536)
T KOG4648|consen  151 EEDCEAAIALDKLYVKAYSRRMQARESLG  179 (536)
T ss_pred             HHhHHHHHHhhHHHHHHHHHHHHHHHHHh
Confidence            99999999999999999999999987763

>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.45  E-value=6.6e-14  Score=126.16  Aligned_cols=96  Identities=26%  Similarity=0.430  Sum_probs=83.3

Q ss_pred             CChhhhhhhhhhhHhhhhhHHhhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHcCCHHH
Q 021445          203 NELSWWMNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKG  282 (312)
Q Consensus       203 ~~~~~~~~~~~~~k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~  282 (312)
                      .......+..+.++++||.+|++|+|..|.++|+.||.+          +++    -....+.+|.|||.++.++|+..+
T Consensus       240 k~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~i----------dP~----n~~~naklY~nra~v~~rLgrl~e  305 (486)
T KOG0550|consen  240 KSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNI----------DPS----NKKTNAKLYGNRALVNIRLGRLRE  305 (486)
T ss_pred             HhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcC----------Ccc----ccchhHHHHHHhHhhhcccCCchh
Confidence            334445567788999999999999999999999999983          111    234568899999999999999999


Q ss_pred             HHHHHHHHHHcCCCchHHHHHHHHHhhhhC
Q 021445          283 ALLDTEFAMRDGDDNVKALFRQGQVSIILL  312 (312)
Q Consensus       283 Ai~~~~~al~l~p~~~Ka~~rrg~a~~~L~  312 (312)
                      ||.+|+.|+.|||...|||.|||+||+.|+
T Consensus       306 aisdc~~Al~iD~syikall~ra~c~l~le  335 (486)
T KOG0550|consen  306 AISDCNEALKIDSSYIKALLRRANCHLALE  335 (486)
T ss_pred             hhhhhhhhhhcCHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999875

>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]

Probab=99.40  E-value=2.5e-13  Score=126.06  Aligned_cols=82  Identities=28%  Similarity=0.365  Sum_probs=78.1

Q ss_pred             hhhhHhhhhhHHhhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHcCCHHHHHHHHHHHH
Q 021445          212 VDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAM  291 (312)
Q Consensus       212 ~~~~k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al  291 (312)
                      +..++++||.+|..|+|+.|+.+|+.||.                  +.|..+.+|+||++||.++++|++|++|+.+..
T Consensus         2 a~e~k~kgnaa~s~~d~~~ai~~~t~ai~------------------l~p~nhvlySnrsaa~a~~~~~~~al~da~k~~   63 (539)
T KOG0548|consen    2 AVELKEKGNAAFSSGDFETAIRLFTEAIM------------------LSPTNHVLYSNRSAAYASLGSYEKALKDATKTR   63 (539)
T ss_pred             hhHHHHHHHhhcccccHHHHHHHHHHHHc------------------cCCCccchhcchHHHHHHHhhHHHHHHHHHHHH
Confidence            45689999999999999999999999999                  677789999999999999999999999999999


Q ss_pred             HcCCCchHHHHHHHHHhhhh
Q 021445          292 RDGDDNVKALFRQGQVSIIL  311 (312)
Q Consensus       292 ~l~p~~~Ka~~rrg~a~~~L  311 (312)
                      +++|.|+|+|.|+|.|+..|
T Consensus        64 ~l~p~w~kgy~r~Gaa~~~l   83 (539)
T KOG0548|consen   64 RLNPDWAKGYSRKGAALFGL   83 (539)
T ss_pred             hcCCchhhHHHHhHHHHHhc
Confidence            99999999999999999876

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=99.34  E-value=6e-12  Score=124.97  Aligned_cols=91  Identities=26%  Similarity=0.341  Sum_probs=81.6

Q ss_pred             CCChhhhhhhhhhhHhhhhhHHhhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHcCCHH
Q 021445          202 PNELSWWMNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLK  281 (312)
Q Consensus       202 ~~~~~~~~~~~~~~k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~  281 (312)
                      ..+.++....+..+++.||.+|+.|+|++|+..|++||.+                  .|. ...|.|+|.||+++++|+
T Consensus       117 ~~~~~~~~~~a~~~k~~G~~~~~~~~~~~Ai~~y~~al~~------------------~p~-~~~~~n~a~~~~~l~~~~  177 (615)
T TIGR00990       117 NLSEEERKKYAAKLKEKGNKAYRNKDFNKAIKLYSKAIEC------------------KPD-PVYYSNRAACHNALGDWE  177 (615)
T ss_pred             cCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc------------------CCc-hHHHHHHHHHHHHhCCHH
Confidence            4455666778899999999999999999999999999983                  232 457999999999999999


Q ss_pred             HHHHHHHHHHHcCCCchHHHHHHHHHhhhh
Q 021445          282 GALLDTEFAMRDGDDNVKALFRQGQVSIIL  311 (312)
Q Consensus       282 ~Ai~~~~~al~l~p~~~Ka~~rrg~a~~~L  311 (312)
                      +|+++|++||+++|+++++|+++|.+|..+
T Consensus       178 ~Ai~~~~~al~l~p~~~~a~~~~a~a~~~l  207 (615)
T TIGR00990       178 KVVEDTTAALELDPDYSKALNRRANAYDGL  207 (615)
T ss_pred             HHHHHHHHHHHcCCCCHHHHHHHHHHHHHc
Confidence            999999999999999999999999999876

>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=99.33  E-value=1.1e-12  Score=110.78  Aligned_cols=83  Identities=25%  Similarity=0.354  Sum_probs=78.9

Q ss_pred             hhhhhhHhhhhhHHhhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHcCCHHHHHHHHHH
Q 021445          210 NAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEF  289 (312)
Q Consensus       210 ~~~~~~k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~  289 (312)
                      ..++.++++||.+|..++|..|+.+|.+||.                  ++|.-+..|.|||+||+|+++|+.+.++|.+
T Consensus         8 ~~a~qlkE~gnk~f~~k~y~~ai~~y~raI~------------------~nP~~~~Y~tnralchlk~~~~~~v~~dcrr   69 (284)
T KOG4642|consen    8 ESAEQLKEQGNKCFIPKRYDDAIDCYSRAIC------------------INPTVASYYTNRALCHLKLKHWEPVEEDCRR   69 (284)
T ss_pred             hHHHHHHhccccccchhhhchHHHHHHHHHh------------------cCCCcchhhhhHHHHHHHhhhhhhhhhhHHH
Confidence            4678899999999999999999999999999                  7888899999999999999999999999999


Q ss_pred             HHHcCCCchHHHHHHHHHhhh
Q 021445          290 AMRDGDDNVKALFRQGQVSII  310 (312)
Q Consensus       290 al~l~p~~~Ka~~rrg~a~~~  310 (312)
                      ||+++|+.+|++|-.|++++.
T Consensus        70 alql~~N~vk~h~flg~~~l~   90 (284)
T KOG4642|consen   70 ALQLDPNLVKAHYFLGQWLLQ   90 (284)
T ss_pred             HHhcChHHHHHHHHHHHHHHh
Confidence            999999999999999998864

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A

Probab=99.30  E-value=6.7e-12  Score=87.92  Aligned_cols=67  Identities=24%  Similarity=0.387  Sum_probs=63.5

Q ss_pred             hhhhhHhhhhhHHhhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHcC-CHHHHHHHHHH
Q 021445          211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLG-DLKGALLDTEF  289 (312)
Q Consensus       211 ~~~~~k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~-~~~~Ai~~~~~  289 (312)
                      .+..+...|..++..++|++|+..|++||+                  ++|....+|.|+|.||++++ ++.+|++++++
T Consensus         2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~------------------~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~   63 (69)
T PF13414_consen    2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIE------------------LDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEK   63 (69)
T ss_dssp             SHHHHHHHHHHHHHTTHHHHHHHHHHHHHH------------------HSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH------------------cCCCCHHHHHHHHHHHHHhCccHHHHHHHHHH
Confidence            577899999999999999999999999999                  67788889999999999999 79999999999


Q ss_pred             HHHcCC
Q 021445          290 AMRDGD  295 (312)
Q Consensus       290 al~l~p  295 (312)
                      ||+++|
T Consensus        64 al~l~P   69 (69)
T PF13414_consen   64 ALKLDP   69 (69)
T ss_dssp             HHHHST
T ss_pred             HHHcCc
Confidence            999998

...

>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]

Probab=99.27  E-value=9.4e-13  Score=121.30  Aligned_cols=85  Identities=27%  Similarity=0.364  Sum_probs=80.6

Q ss_pred             hhhhhhHhhhhhHHhhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHcCCHHHHHHHHHH
Q 021445          210 NAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEF  289 (312)
Q Consensus       210 ~~~~~~k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~  289 (312)
                      ..+..+++++|.+|+.++|+.|+..|+|||+                  ++|..+..+.|||++++|.++|..|+.||++
T Consensus         2 ~~a~e~k~ean~~l~~~~fd~avdlysKaI~------------------ldpnca~~~anRa~a~lK~e~~~~Al~Da~k   63 (476)
T KOG0376|consen    2 SSAEELKNEANEALKDKVFDVAVDLYSKAIE------------------LDPNCAIYFANRALAHLKVESFGGALHDALK   63 (476)
T ss_pred             chhhhhhhHHhhhcccchHHHHHHHHHHHHh------------------cCCcceeeechhhhhheeechhhhHHHHHHh
Confidence            3577899999999999999999999999999                  7888899999999999999999999999999


Q ss_pred             HHHcCCCchHHHHHHHHHhhhhC
Q 021445          290 AMRDGDDNVKALFRQGQVSIILL  312 (312)
Q Consensus       290 al~l~p~~~Ka~~rrg~a~~~L~  312 (312)
                      |++++|...|||+|||.|+++|.
T Consensus        64 aie~dP~~~K~Y~rrg~a~m~l~   86 (476)
T KOG0376|consen   64 AIELDPTYIKAYVRRGTAVMALG   86 (476)
T ss_pred             hhhcCchhhheeeeccHHHHhHH
Confidence            99999999999999999998763

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=99.20  E-value=5.1e-11  Score=110.35  Aligned_cols=82  Identities=21%  Similarity=0.428  Sum_probs=76.6

Q ss_pred             hhhhHhhhhhHHhhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHcCCHHHHHHHHHHHH
Q 021445          212 VDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAM  291 (312)
Q Consensus       212 ~~~~k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al  291 (312)
                      +..++.+|+.+|..++|++|+..|++||+                  +.|....+|.|||.||+++|+|++|+.++++||
T Consensus         2 ~~~l~~~a~~a~~~~~~~~Ai~~~~~Al~------------------~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al   63 (356)
T PLN03088          2 AKDLEDKAKEAFVDDDFALAVDLYTQAID------------------LDPNNAELYADRAQANIKLGNFTEAVADANKAI   63 (356)
T ss_pred             cHHHHHHHHHHHHcCCHHHHHHHHHHHHH------------------hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            45688999999999999999999999999                  566677899999999999999999999999999


Q ss_pred             HcCCCchHHHHHHHHHhhhh
Q 021445          292 RDGDDNVKALFRQGQVSIIL  311 (312)
Q Consensus       292 ~l~p~~~Ka~~rrg~a~~~L  311 (312)
                      +++|.++.+|+++|.+|+.+
T Consensus        64 ~l~P~~~~a~~~lg~~~~~l   83 (356)
T PLN03088         64 ELDPSLAKAYLRKGTACMKL   83 (356)
T ss_pred             HhCcCCHHHHHHHHHHHHHh
Confidence            99999999999999999876

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=99.00  E-value=1.2e-09  Score=88.12  Aligned_cols=78  Identities=10%  Similarity=0.106  Sum_probs=42.9

Q ss_pred             hHhhhhhHHhhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 021445          215 IKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDG  294 (312)
Q Consensus       215 ~k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~l~  294 (312)
                      +...|..++..|+|++|+..|.+++.                  ++|....+|.++|.++.++|+|++|+..+.+++.++
T Consensus        27 ~~~~g~~~~~~g~~~~A~~~~~~al~------------------~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~   88 (144)
T PRK15359         27 VYASGYASWQEGDYSRAVIDFSWLVM------------------AQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLD   88 (144)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHH------------------cCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence            34456666666666666666666665                  344444455555555555555555555555555555


Q ss_pred             CCchHHHHHHHHHhhh
Q 021445          295 DDNVKALFRQGQVSII  310 (312)
Q Consensus       295 p~~~Ka~~rrg~a~~~  310 (312)
                      |.++.+++++|.++..
T Consensus        89 p~~~~a~~~lg~~l~~  104 (144)
T PRK15359         89 ASHPEPVYQTGVCLKM  104 (144)
T ss_pred             CCCcHHHHHHHHHHHH
Confidence            5555555555555543

>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional

Probab=98.99  E-value=2.6e-09  Score=85.95  Aligned_cols=83  Identities=8%  Similarity=0.051  Sum_probs=78.3

Q ss_pred             hhhhhHhhhhhHHhhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHcCCHHHHHHHHHHH
Q 021445          211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA  290 (312)
Q Consensus       211 ~~~~~k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~a  290 (312)
                      ..+.+...|..++..|+|++|...|+-...                  ++|.....|.|+|+|+..+|+|.+||..+.+|
T Consensus        34 ~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~------------------~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A   95 (157)
T PRK15363         34 PLNTLYRYAMQLMEVKEFAGAARLFQLLTI------------------YDAWSFDYWFRLGECCQAQKHWGEAIYAYGRA   95 (157)
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHH------------------hCcccHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence            455688999999999999999999999988                  78889999999999999999999999999999


Q ss_pred             HHcCCCchHHHHHHHHHhhhh
Q 021445          291 MRDGDDNVKALFRQGQVSIIL  311 (312)
Q Consensus       291 l~l~p~~~Ka~~rrg~a~~~L  311 (312)
                      +.++|+++.+++..|.|++.+
T Consensus        96 ~~L~~ddp~~~~~ag~c~L~l  116 (157)
T PRK15363         96 AQIKIDAPQAPWAAAECYLAC  116 (157)
T ss_pred             HhcCCCCchHHHHHHHHHHHc
Confidence            999999999999999999875

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=98.96  E-value=2.3e-09  Score=86.46  Aligned_cols=78  Identities=14%  Similarity=0.150  Sum_probs=73.4

Q ss_pred             HhhhhhHHhhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHcCCHHHHHHHHHHHHHcCC
Q 021445          216 KVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGD  295 (312)
Q Consensus       216 k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~l~p  295 (312)
                      ...|..+.+.|+|++|+..|.+|+.                  ++|.....+.|+|.|+.++|++++|+..+.+||+++|
T Consensus        62 ~~lg~~~~~~g~~~~A~~~y~~Al~------------------l~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p  123 (144)
T PRK15359         62 IALAGTWMMLKEYTTAINFYGHALM------------------LDASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSY  123 (144)
T ss_pred             HHHHHHHHHHhhHHHHHHHHHHHHh------------------cCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence            4678889999999999999999999                  6778899999999999999999999999999999999


Q ss_pred             CchHHHHHHHHHhhhh
Q 021445          296 DNVKALFRQGQVSIIL  311 (312)
Q Consensus       296 ~~~Ka~~rrg~a~~~L  311 (312)
                      +++.++..||.+...|
T Consensus       124 ~~~~~~~~~~~~~~~l  139 (144)
T PRK15359        124 ADASWSEIRQNAQIMV  139 (144)
T ss_pred             CChHHHHHHHHHHHHH
Confidence            9999999999998765

>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=98.86  E-value=2.5e-10  Score=101.30  Aligned_cols=121  Identities=22%  Similarity=0.317  Sum_probs=99.9

Q ss_pred             CCcccceEEeeeeeeCCCCCCCCCccCCCCCCCCCCCCCCCCCCCChhhhhhhhhhhHhhhhhHHhhhcHHHHHHHHHHH
Q 021445          159 DCPIADVTITDCGEIPEGADDGISNFFNDGDSYPDWPADLDQTPNELSWWMNAVDSIKVFGNEHYKKQDYKMALRKYRKA  238 (312)
Q Consensus       159 ~~P~~~i~I~~~g~l~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~k~~Gn~~~~~~~y~~A~~~Y~ka  238 (312)
                      ..|..+..|..-|++....+.+.+    .+|.          ..+.-++.++.+...|-++-+++..|.++.|++.|+.|
T Consensus        75 s~~~~~~~~d~egviepd~d~pq~----MGds----------~~e~Tee~~eqa~e~k~~A~eAln~G~~~~ai~~~t~a  140 (377)
T KOG1308|consen   75 SSPESDLEIDGEGVIEPDTDAPQE----MGDS----------NAEITEEMMDQANDKKVQASEALNDGEFDTAIELFTSA  140 (377)
T ss_pred             CCCCcchhccCCCccccCCCcchh----hchh----------hhhhhHHHHHHHHHHHHHHHHHhcCcchhhhhcccccc
Confidence            456666677777777433333322    2222          23344567888999999999999999999999999999


Q ss_pred             HHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHhhhh
Q 021445          239 LRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQVSIIL  311 (312)
Q Consensus       239 l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~l~p~~~Ka~~rrg~a~~~L  311 (312)
                      |.                  ++|-...+|.+|+.++++|+++..|+.||+.||+++|+.++.|-.|++|+..|
T Consensus       141 i~------------------lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rll  195 (377)
T KOG1308|consen  141 IE------------------LNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLL  195 (377)
T ss_pred             cc------------------cCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHh
Confidence            99                  78889999999999999999999999999999999999999999999998765

>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=98.83  E-value=3.7e-09  Score=95.91  Aligned_cols=91  Identities=26%  Similarity=0.349  Sum_probs=82.9

Q ss_pred             CChhhhhhhhhhhHhhhhhHHhhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHcCCHHH
Q 021445          203 NELSWWMNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKG  282 (312)
Q Consensus       203 ~~~~~~~~~~~~~k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~  282 (312)
                      ....+....++..+++||.++++++|.+|+..|+.||+                  +-|..+..|.|||+|++.+++|++
T Consensus        40 s~~~~~~~~Ae~~k~~gn~~yk~k~Y~nal~~yt~Ai~------------------~~pd~a~yy~nRAa~~m~~~~~~~  101 (486)
T KOG0550|consen   40 SFSQEAAQQAEEAKEEGNAFYKQKTYGNALKNYTFAID------------------MCPDNASYYSNRAATLMMLGRFEE  101 (486)
T ss_pred             cccchHHHHHHHHHhhcchHHHHhhHHHHHHHHHHHHH------------------hCccchhhhchhHHHHHHHHhHhh
Confidence            33445566889999999999999999999999999999                  456668899999999999999999


Q ss_pred             HHHHHHHHHHcCCCchHHHHHHHHHhhhh
Q 021445          283 ALLDTEFAMRDGDDNVKALFRQGQVSIIL  311 (312)
Q Consensus       283 Ai~~~~~al~l~p~~~Ka~~rrg~a~~~L  311 (312)
                      |+-++.+.++++|...|++.|-++|+..+
T Consensus       102 a~~dar~~~r~kd~~~k~~~r~~~c~~a~  130 (486)
T KOG0550|consen  102 ALGDARQSVRLKDGFSKGQLREGQCHLAL  130 (486)
T ss_pred             cccchhhheecCCCccccccchhhhhhhh
Confidence            99999999999999999999999999875

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=98.82  E-value=9.6e-09  Score=70.86  Aligned_cols=64  Identities=20%  Similarity=0.259  Sum_probs=58.0

Q ss_pred             hhhhhHHhhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Q 021445          217 VFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDD  296 (312)
Q Consensus       217 ~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~l~p~  296 (312)
                      ..|..+++.|+|++|+..|+++++                  ..|....++..+|.|++++|++++|+..++++++++|+
T Consensus         2 ~~a~~~~~~g~~~~A~~~~~~~l~------------------~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~   63 (65)
T PF13432_consen    2 ALARALYQQGDYDEAIAAFEQALK------------------QDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPD   63 (65)
T ss_dssp             HHHHHHHHCTHHHHHHHHHHHHHC------------------CSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred             hHHHHHHHcCCHHHHHHHHHHHHH------------------HCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC
Confidence            578999999999999999999999                  45778889999999999999999999999999999998


Q ss_pred             ch
Q 021445          297 NV  298 (312)
Q Consensus       297 ~~  298 (312)
                      ++
T Consensus        64 ~p   65 (65)
T PF13432_consen   64 NP   65 (65)
T ss_dssp             -H
T ss_pred             CC
Confidence            75

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=98.71  E-value=6.3e-08  Score=76.68  Aligned_cols=82  Identities=17%  Similarity=0.274  Sum_probs=72.1

Q ss_pred             hhhhHhhhhhHHhhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHcCCHHHHHHHHHHHH
Q 021445          212 VDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAM  291 (312)
Q Consensus       212 ~~~~k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al  291 (312)
                      +..+...|..+++.++|++|++.|++++.                  ..|....++.++|.|+++++++++|+..+++++
T Consensus        17 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~------------------~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~   78 (135)
T TIGR02552        17 LEQIYALAYNLYQQGRYDEALKLFQLLAA------------------YDPYNSRYWLGLAACCQMLKEYEEAIDAYALAA   78 (135)
T ss_pred             HHHHHHHHHHHHHcccHHHHHHHHHHHHH------------------hCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34577899999999999999999999988                  455567789999999999999999999999999


Q ss_pred             HcCCCchHHHHHHHHHhhhh
Q 021445          292 RDGDDNVKALFRQGQVSIIL  311 (312)
Q Consensus       292 ~l~p~~~Ka~~rrg~a~~~L  311 (312)
                      .++|.+...++.+|.+|..+
T Consensus        79 ~~~p~~~~~~~~la~~~~~~   98 (135)
T TIGR02552        79 ALDPDDPRPYFHAAECLLAL   98 (135)
T ss_pred             hcCCCChHHHHHHHHHHHHc
Confidence            99999999999999988754

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A

Probab=98.69  E-value=3.8e-08  Score=68.35  Aligned_cols=67  Identities=24%  Similarity=0.192  Sum_probs=59.3

Q ss_pred             HHhhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHcCCHHHHHHHHHHHHHcCCCchHHH
Q 021445          222 HYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKAL  301 (312)
Q Consensus       222 ~~~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~l~p~~~Ka~  301 (312)
                      ++++|+|++|+..|++++.                  ..|....++.++|.||+++|++++|...+.+++..+|+++..+
T Consensus         1 ll~~~~~~~A~~~~~~~l~------------------~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~   62 (68)
T PF14559_consen    1 LLKQGDYDEAIELLEKALQ------------------RNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQ   62 (68)
T ss_dssp             HHHTTHHHHHHHHHHHHHH------------------HTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHH
T ss_pred             ChhccCHHHHHHHHHHHHH------------------HCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHH
Confidence            5789999999999999999                  6677788999999999999999999999999999999987776


Q ss_pred             HHHHH
Q 021445          302 FRQGQ  306 (312)
Q Consensus       302 ~rrg~  306 (312)
                      .-+|+
T Consensus        63 ~l~a~   67 (68)
T PF14559_consen   63 QLLAQ   67 (68)
T ss_dssp             HHHHH
T ss_pred             HHHhc
Confidence            66554

...

>PF13371 TPR_9: Tetratricopeptide repeat

Probab=98.69  E-value=8.2e-08  Score=67.66  Aligned_cols=70  Identities=24%  Similarity=0.347  Sum_probs=63.9

Q ss_pred             hhhHHhhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHcCCHHHHHHHHHHHHHcCCCch
Q 021445          219 GNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNV  298 (312)
Q Consensus       219 Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~l~p~~~  298 (312)
                      .+.++++++|++|+..+++++.                  +.|....++.++|.|+.++|+|.+|+++++++++..|++.
T Consensus         2 ~~~~~~~~~~~~A~~~~~~~l~------------------~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~   63 (73)
T PF13371_consen    2 KQIYLQQEDYEEALEVLERALE------------------LDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDP   63 (73)
T ss_pred             HHHHHhCCCHHHHHHHHHHHHH------------------hCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcH
Confidence            3567899999999999999999                  6788899999999999999999999999999999999999


Q ss_pred             HHHHHHHH
Q 021445          299 KALFRQGQ  306 (312)
Q Consensus       299 Ka~~rrg~  306 (312)
                      .+..-+++
T Consensus        64 ~~~~~~a~   71 (73)
T PF13371_consen   64 DARALRAM   71 (73)
T ss_pred             HHHHHHHh
Confidence            88776654

>PRK11189 lipoprotein NlpI; Provisional

Probab=98.69  E-value=6.6e-08  Score=87.46  Aligned_cols=83  Identities=12%  Similarity=0.015  Sum_probs=75.0

Q ss_pred             hhhhhHhhhhhHHhhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHcCCHHHHHHHHHHH
Q 021445          211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA  290 (312)
Q Consensus       211 ~~~~~k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~a  290 (312)
                      .+..+.++|..+.+.|++.+|+..|++|++                  ++|....+|.++|.++..+|+|++|+..++++
T Consensus        63 ~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~------------------l~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~A  124 (296)
T PRK11189         63 RAQLHYERGVLYDSLGLRALARNDFSQALA------------------LRPDMADAYNYLGIYLTQAGNFDAAYEAFDSV  124 (296)
T ss_pred             hHHHHHHHHHHHHHCCCHHHHHHHHHHHHH------------------cCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence            355688999999999999999999999999                  56677889999999999999999999999999


Q ss_pred             HHcCCCchHHHHHHHHHhhhh
Q 021445          291 MRDGDDNVKALFRQGQVSIIL  311 (312)
Q Consensus       291 l~l~p~~~Ka~~rrg~a~~~L  311 (312)
                      |+++|++..+|+.+|.+++.+
T Consensus       125 l~l~P~~~~a~~~lg~~l~~~  145 (296)
T PRK11189        125 LELDPTYNYAYLNRGIALYYG  145 (296)
T ss_pred             HHhCCCCHHHHHHHHHHHHHC
Confidence            999999999999999998653

>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H

Probab=98.64  E-value=2e-07  Score=66.62  Aligned_cols=72  Identities=21%  Similarity=0.230  Sum_probs=60.9

Q ss_pred             hhhhhHhhhhhHHhhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHcCCHHHHHHHHHHH
Q 021445          211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA  290 (312)
Q Consensus       211 ~~~~~k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~a  290 (312)
                      .+..+.+.|..++..|+|++|+..|++|+.+....           ..-.+....++.|+|.|+..+|++++|++.+.+|
T Consensus         4 ~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~-----------~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~a   72 (78)
T PF13424_consen    4 TANAYNNLARVYRELGRYDEALDYYEKALDIEEQL-----------GDDHPDTANTLNNLGECYYRLGDYEEALEYYQKA   72 (78)
T ss_dssp             HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-----------TTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH-----------CCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            46678899999999999999999999999974332           1134566889999999999999999999999999


Q ss_pred             HHc
Q 021445          291 MRD  293 (312)
Q Consensus       291 l~l  293 (312)
                      +++
T Consensus        73 l~i   75 (78)
T PF13424_consen   73 LDI   75 (78)
T ss_dssp             HHH
T ss_pred             Hhh
Confidence            986

...

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=98.63  E-value=7.3e-08  Score=89.95  Aligned_cols=90  Identities=22%  Similarity=0.190  Sum_probs=81.9

Q ss_pred             ChhhhhhhhhhhHhhhhhHHhhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHcC---CH
Q 021445          204 ELSWWMNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLG---DL  280 (312)
Q Consensus       204 ~~~~~~~~~~~~k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~---~~  280 (312)
                      .+-+..+.+++.+++||..|-.+.+..|+..|.+++.                  .-+....+|.|||++++|.+   +.
T Consensus       366 ~~~eL~e~ie~~~~egnd~ly~~~~~~~i~~~s~a~q------------------~~~~~~~~l~nraa~lmkRkW~~d~  427 (758)
T KOG1310|consen  366 RFYELPENIEKFKTEGNDGLYESIVSGAISHYSRAIQ------------------YVPDAIYLLENRAAALMKRKWRGDS  427 (758)
T ss_pred             chhhchHHHHHHHhhccchhhhHHHHHHHHHHHHHhh------------------hccchhHHHHhHHHHHHhhhccccH
Confidence            3667778899999999999999999999999999999                  45667889999999999964   78


Q ss_pred             HHHHHHHHHHHHcCCCchHHHHHHHHHhhhh
Q 021445          281 KGALLDTEFAMRDGDDNVKALFRQGQVSIIL  311 (312)
Q Consensus       281 ~~Ai~~~~~al~l~p~~~Ka~~rrg~a~~~L  311 (312)
                      -.|+.||..||++||...||+||.+.|+..|
T Consensus       428 ~~AlrDch~Alrln~s~~kah~~la~aL~el  458 (758)
T KOG1310|consen  428 YLALRDCHVALRLNPSIQKAHFRLARALNEL  458 (758)
T ss_pred             HHHHHhHHhhccCChHHHHHHHHHHHHHHHH
Confidence            8999999999999999999999999998765

>KOG4555 consensus TPR repeat-containing protein [Function unknown]

Probab=98.60  E-value=3e-07  Score=71.17  Aligned_cols=89  Identities=19%  Similarity=0.185  Sum_probs=76.6

Q ss_pred             ChhhhhhhhhhhHhhhhhHHhhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHcCCHHHH
Q 021445          204 ELSWWMNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGA  283 (312)
Q Consensus       204 ~~~~~~~~~~~~k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~A  283 (312)
                      .....++....+--+|..+-..|+...|++.|.+||.                  +-|....+|+|||+++--+++.++|
T Consensus        35 ~~~~~~e~S~~LEl~~valaE~g~Ld~AlE~F~qal~------------------l~P~raSayNNRAQa~RLq~~~e~A   96 (175)
T KOG4555|consen   35 PDTQAIKASRELELKAIALAEAGDLDGALELFGQALC------------------LAPERASAYNNRAQALRLQGDDEEA   96 (175)
T ss_pred             CchHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHH------------------hcccchHhhccHHHHHHHcCChHHH
Confidence            3445567778888899999999999999999999999                  5677899999999999999999999


Q ss_pred             HHHHHHHHHcCCCch----HHHHHHHHHhhh
Q 021445          284 LLDTEFAMRDGDDNV----KALFRQGQVSII  310 (312)
Q Consensus       284 i~~~~~al~l~p~~~----Ka~~rrg~a~~~  310 (312)
                      ++|.++||++.....    .||..||..|..
T Consensus        97 LdDLn~AleLag~~trtacqa~vQRg~lyRl  127 (175)
T KOG4555|consen   97 LDDLNKALELAGDQTRTACQAFVQRGLLYRL  127 (175)
T ss_pred             HHHHHHHHHhcCccchHHHHHHHHHHHHHHH
Confidence            999999999975544    478888877754

>PRK02603 photosystem I assembly protein Ycf3; Provisional

Probab=98.55  E-value=6.7e-07  Score=74.24  Aligned_cols=89  Identities=18%  Similarity=0.059  Sum_probs=75.3

Q ss_pred             hhhhhhhhHhhhhhHHhhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHcCCHHHHHHHH
Q 021445          208 WMNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDT  287 (312)
Q Consensus       208 ~~~~~~~~k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~  287 (312)
                      ....+..+...|..+...|+|++|+.+|.+++..-..               .+....++.|+|.++.++|+|++|+..+
T Consensus        31 ~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~---------------~~~~~~~~~~la~~~~~~g~~~~A~~~~   95 (172)
T PRK02603         31 KAKEAFVYYRDGMSAQADGEYAEALENYEEALKLEED---------------PNDRSYILYNMGIIYASNGEHDKALEYY   95 (172)
T ss_pred             HhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhc---------------cchHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            3446667899999999999999999999999984211               0113568999999999999999999999


Q ss_pred             HHHHHcCCCchHHHHHHHHHhhhh
Q 021445          288 EFAMRDGDDNVKALFRQGQVSIIL  311 (312)
Q Consensus       288 ~~al~l~p~~~Ka~~rrg~a~~~L  311 (312)
                      .+++.++|.+..+++.+|.+|..+
T Consensus        96 ~~al~~~p~~~~~~~~lg~~~~~~  119 (172)
T PRK02603         96 HQALELNPKQPSALNNIAVIYHKR  119 (172)
T ss_pred             HHHHHhCcccHHHHHHHHHHHHHc
Confidence            999999999999999999988653

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=98.53  E-value=3.7e-07  Score=84.70  Aligned_cols=82  Identities=11%  Similarity=0.069  Sum_probs=75.3

Q ss_pred             hhhhHhhhhhHHhhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHcCCHHHHHHHHHHHH
Q 021445          212 VDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAM  291 (312)
Q Consensus       212 ~~~~k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al  291 (312)
                      +..+..+|..+++.|+|++|+..+.+||.                  +.|....+|.++|.+|+++|+|++|+.++++++
T Consensus        36 ~~a~~~~a~~~~~~g~~~eAl~~~~~Al~------------------l~P~~~~a~~~lg~~~~~lg~~~eA~~~~~~al   97 (356)
T PLN03088         36 AELYADRAQANIKLGNFTEAVADANKAIE------------------LDPSLAKAYLRKGTACMKLEEYQTAKAALEKGA   97 (356)
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHH------------------hCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence            45578899999999999999999999999                  667778899999999999999999999999999


Q ss_pred             HcCCCchHHHHHHHHHhhhh
Q 021445          292 RDGDDNVKALFRQGQVSIIL  311 (312)
Q Consensus       292 ~l~p~~~Ka~~rrg~a~~~L  311 (312)
                      +++|++..+....+.|...|
T Consensus        98 ~l~P~~~~~~~~l~~~~~kl  117 (356)
T PLN03088         98 SLAPGDSRFTKLIKECDEKI  117 (356)
T ss_pred             HhCCCCHHHHHHHHHHHHHH
Confidence            99999999999999886654

>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=98.51  E-value=2.7e-07  Score=87.80  Aligned_cols=83  Identities=22%  Similarity=0.191  Sum_probs=66.7

Q ss_pred             hhhhhHhhhhhHHhhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHcCCHHHHHHHHHHH
Q 021445          211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA  290 (312)
Q Consensus       211 ~~~~~k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~a  290 (312)
                      .++.+.+.||.+...+++++|+..|.+|++                  +.|..+.+++|+|..|-++|++++|+.++.+|
T Consensus       353 hadam~NLgni~~E~~~~e~A~~ly~~al~------------------v~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykea  414 (966)
T KOG4626|consen  353 HADAMNNLGNIYREQGKIEEATRLYLKALE------------------VFPEFAAAHNNLASIYKQQGNLDDAIMCYKEA  414 (966)
T ss_pred             cHHHHHHHHHHHHHhccchHHHHHHHHHHh------------------hChhhhhhhhhHHHHHHhcccHHHHHHHHHHH
Confidence            355556667777777777777777777776                  66788889999999999999999999999999


Q ss_pred             HHcCCCchHHHHHHHHHhhhh
Q 021445          291 MRDGDDNVKALFRQGQVSIIL  311 (312)
Q Consensus       291 l~l~p~~~Ka~~rrg~a~~~L  311 (312)
                      |+++|+.+.||..+|..|-.+
T Consensus       415 lrI~P~fAda~~NmGnt~ke~  435 (966)
T KOG4626|consen  415 LRIKPTFADALSNMGNTYKEM  435 (966)
T ss_pred             HhcCchHHHHHHhcchHHHHh
Confidence            999999999999988877544

>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A

Probab=98.47  E-value=3e-07  Score=66.84  Aligned_cols=68  Identities=19%  Similarity=0.284  Sum_probs=59.5

Q ss_pred             hhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHH--HHHHHhHHHHHHHHcCCHHHHHHHHHHHHHcCCCchHHHH
Q 021445          225 KQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKT--KSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALF  302 (312)
Q Consensus       225 ~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~--~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~l~p~~~Ka~~  302 (312)
                      +++|+.|+..|.++++.                  .|.  ....+.++|.||+++|+|++|+..+++ +..++.+....+
T Consensus         2 ~~~y~~Ai~~~~k~~~~------------------~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~   62 (84)
T PF12895_consen    2 QGNYENAIKYYEKLLEL------------------DPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHY   62 (84)
T ss_dssp             TT-HHHHHHHHHHHHHH------------------HCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHH
T ss_pred             CccHHHHHHHHHHHHHH------------------CCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHH
Confidence            58999999999999993                  221  556788899999999999999999999 999999999999


Q ss_pred             HHHHHhhhh
Q 021445          303 RQGQVSIIL  311 (312)
Q Consensus       303 rrg~a~~~L  311 (312)
                      -.|+|+..|
T Consensus        63 l~a~~~~~l   71 (84)
T PF12895_consen   63 LLARCLLKL   71 (84)
T ss_dssp             HHHHHHHHT
T ss_pred             HHHHHHHHh
Confidence            999999876

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Probab=98.46  E-value=9.1e-07  Score=63.45  Aligned_cols=80  Identities=35%  Similarity=0.424  Sum_probs=69.7

Q ss_pred             hhHhhhhhHHhhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHcCCHHHHHHHHHHHHHc
Q 021445          214 SIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRD  293 (312)
Q Consensus       214 ~~k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~l  293 (312)
                      .+...|..++..|++++|+..+.++++.                  .+....++.++|.++..++++++|++.+++++.+
T Consensus         2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~   63 (100)
T cd00189           2 ALLNLGNLYYKLGDYDEALEYYEKALEL------------------DPDNADAYYNLAAAYYKLGKYEEALEDYEKALEL   63 (100)
T ss_pred             HHHHHHHHHHHHhcHHHHHHHHHHHHhc------------------CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            3567889999999999999999999983                  2233368899999999999999999999999999


Q ss_pred             CCCchHHHHHHHHHhhhh
Q 021445          294 GDDNVKALFRQGQVSIIL  311 (312)
Q Consensus       294 ~p~~~Ka~~rrg~a~~~L  311 (312)
                      .|.+..+++..|.++..+
T Consensus        64 ~~~~~~~~~~~~~~~~~~   81 (100)
T cd00189          64 DPDNAKAYYNLGLAYYKL   81 (100)
T ss_pred             CCcchhHHHHHHHHHHHH
Confidence            999999999999887653

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A

Probab=98.46  E-value=4.4e-07  Score=63.13  Aligned_cols=48  Identities=21%  Similarity=0.248  Sum_probs=45.7

Q ss_pred             HHHHhHHHHHHHHcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHhhhh
Q 021445          264 SQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQVSIIL  311 (312)
Q Consensus       264 ~~~~~N~a~~~~kl~~~~~Ai~~~~~al~l~p~~~Ka~~rrg~a~~~L  311 (312)
                      +.+|.++|.+++++++|++|+.+++++|+++|+++.+|+++|.+|..+
T Consensus         3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~   50 (69)
T PF13414_consen    3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKL   50 (69)
T ss_dssp             HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHh
Confidence            458999999999999999999999999999999999999999999875

...

>CHL00033 ycf3 photosystem I assembly protein Ycf3

Probab=98.44  E-value=1.4e-06  Score=71.86  Aligned_cols=85  Identities=19%  Similarity=0.057  Sum_probs=73.4

Q ss_pred             hhhhhhHhhhhhHHhhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHcCCHHHHHHHHHH
Q 021445          210 NAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEF  289 (312)
Q Consensus       210 ~~~~~~k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~  289 (312)
                      ..+..+...|..++..++|++|+..|.+|+.....               ......+|.|+|.++.++|++++|+..+.+
T Consensus        33 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~---------------~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~   97 (168)
T CHL00033         33 KEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEID---------------PYDRSYILYNIGLIHTSNGEHTKALEYYFQ   97 (168)
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcccc---------------chhhHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            36777889999999999999999999999984210               112345899999999999999999999999


Q ss_pred             HHHcCCCchHHHHHHHHHhh
Q 021445          290 AMRDGDDNVKALFRQGQVSI  309 (312)
Q Consensus       290 al~l~p~~~Ka~~rrg~a~~  309 (312)
                      |+.++|.+..++..+|.++.
T Consensus        98 Al~~~~~~~~~~~~la~i~~  117 (168)
T CHL00033         98 ALERNPFLPQALNNMAVICH  117 (168)
T ss_pred             HHHhCcCcHHHHHHHHHHHH
Confidence            99999999999999888886

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional

Probab=98.40  E-value=1.1e-06  Score=74.68  Aligned_cols=83  Identities=19%  Similarity=0.272  Sum_probs=72.1

Q ss_pred             hhhhhHhhhhhHHhhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHH-HHcCC--HHHHHHHH
Q 021445          211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACK-LKLGD--LKGALLDT  287 (312)
Q Consensus       211 ~~~~~k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~-~kl~~--~~~Ai~~~  287 (312)
                      .++.|...|..+...|+|++|+..|.+|++                  +.|....++.++|.++ ...|+  +++|++.+
T Consensus        72 ~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~------------------l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l  133 (198)
T PRK10370         72 NSEQWALLGEYYLWRNDYDNALLAYRQALQ------------------LRGENAELYAALATVLYYQAGQHMTPQTREMI  133 (198)
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHH------------------hCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHH
Confidence            355688999999999999999999999999                  6677788999999885 67777  58999999


Q ss_pred             HHHHHcCCCchHHHHHHHHHhhhh
Q 021445          288 EFAMRDGDDNVKALFRQGQVSIIL  311 (312)
Q Consensus       288 ~~al~l~p~~~Ka~~rrg~a~~~L  311 (312)
                      +++++++|++..+++.+|.++..+
T Consensus       134 ~~al~~dP~~~~al~~LA~~~~~~  157 (198)
T PRK10370        134 DKALALDANEVTALMLLASDAFMQ  157 (198)
T ss_pred             HHHHHhCCCChhHHHHHHHHHHHc
Confidence            999999999999999999888754

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF

Probab=98.39  E-value=1.9e-06  Score=66.06  Aligned_cols=85  Identities=13%  Similarity=0.028  Sum_probs=69.4

Q ss_pred             hhhhHhhhhhHHhhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHcCCHHHHHHHHHHHH
Q 021445          212 VDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAM  291 (312)
Q Consensus       212 ~~~~k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al  291 (312)
                      ++.+.+.|..+++.|+|++|+..|.+++.....               .+....++.++|.+++++++|++|+..+.+++
T Consensus         2 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~---------------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~   66 (119)
T TIGR02795         2 EEAYYDAALLVLKAGDYADAIQAFQAFLKKYPK---------------STYAPNAHYWLGEAYYAQGKYADAAKAFLAVV   66 (119)
T ss_pred             cHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC---------------ccccHHHHHHHHHHHHhhccHHHHHHHHHHHH
Confidence            345778999999999999999999999983110               12234578899999999999999999999999


Q ss_pred             HcCCCc---hHHHHHHHHHhhhh
Q 021445          292 RDGDDN---VKALFRQGQVSIIL  311 (312)
Q Consensus       292 ~l~p~~---~Ka~~rrg~a~~~L  311 (312)
                      ..+|++   ..+++..|.++..+
T Consensus        67 ~~~p~~~~~~~~~~~~~~~~~~~   89 (119)
T TIGR02795        67 KKYPKSPKAPDALLKLGMSLQEL   89 (119)
T ss_pred             HHCCCCCcccHHHHHHHHHHHHh
Confidence            998875   57899999988765

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.

>PF13512 TPR_18: Tetratricopeptide repeat

Probab=98.37  E-value=1.8e-06  Score=68.45  Aligned_cols=86  Identities=14%  Similarity=0.109  Sum_probs=72.6

Q ss_pred             hhhhhHhhhhhHHhhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHcCCHHHHHHHHHHH
Q 021445          211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA  290 (312)
Q Consensus       211 ~~~~~k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~a  290 (312)
                      .+..+.++|..+++.|+|.+|+..++....-..               ..+.-..+.+.++-+|++.++|.+|+..+++-
T Consensus         9 ~~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP---------------~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rF   73 (142)
T PF13512_consen    9 SPQELYQEAQEALQKGNYEEAIKQLEALDTRYP---------------FGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRF   73 (142)
T ss_pred             CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCC---------------CCcccHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence            356689999999999999999998877766221               22444568889999999999999999999999


Q ss_pred             HHcCCCchH---HHHHHHHHhhhh
Q 021445          291 MRDGDDNVK---ALFRQGQVSIIL  311 (312)
Q Consensus       291 l~l~p~~~K---a~~rrg~a~~~L  311 (312)
                      |+++|++++   |||++|.+++.+
T Consensus        74 irLhP~hp~vdYa~Y~~gL~~~~~   97 (142)
T PF13512_consen   74 IRLHPTHPNVDYAYYMRGLSYYEQ   97 (142)
T ss_pred             HHhCCCCCCccHHHHHHHHHHHHH
Confidence            999999886   899999998764

>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=98.33  E-value=1e-06  Score=52.34  Aligned_cols=33  Identities=27%  Similarity=0.309  Sum_probs=30.3

Q ss_pred             HHHhHHHHHHHHcCCHHHHHHHHHHHHHcCCCc
Q 021445          265 QIFTNSSACKLKLGDLKGALLDTEFAMRDGDDN  297 (312)
Q Consensus       265 ~~~~N~a~~~~kl~~~~~Ai~~~~~al~l~p~~  297 (312)
                      .+|.|+|.||+.+++|++|+.+|++||+++|++
T Consensus         2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~   34 (34)
T PF00515_consen    2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPDN   34 (34)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTH
T ss_pred             HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcCC
Confidence            579999999999999999999999999999975

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....

>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional

Probab=98.32  E-value=1.2e-06  Score=81.74  Aligned_cols=66  Identities=23%  Similarity=0.247  Sum_probs=59.3

Q ss_pred             hhhhhHhhhhhHHhhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHH---HHHhHHHHHHHHcCCHHHHHHHH
Q 021445          211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKS---QIFTNSSACKLKLGDLKGALLDT  287 (312)
Q Consensus       211 ~~~~~k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~---~~~~N~a~~~~kl~~~~~Ai~~~  287 (312)
                      .+..+.+.|..+++.|+|++|+..|++||+                  ++|...   .+|+|+|.||.++|++++|++++
T Consensus        74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALe------------------L~Pd~aeA~~A~yNLAcaya~LGr~dEAla~L  135 (453)
T PLN03098         74 TAEDAVNLGLSLFSKGRVKDALAQFETALE------------------LNPNPDEAQAAYYNKACCHAYREEGKKAADCL  135 (453)
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHh------------------hCCCchHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            466789999999999999999999999999                  455544   46999999999999999999999


Q ss_pred             HHHHHcC
Q 021445          288 EFAMRDG  294 (312)
Q Consensus       288 ~~al~l~  294 (312)
                      .+||++.
T Consensus       136 rrALels  142 (453)
T PLN03098        136 RTALRDY  142 (453)
T ss_pred             HHHHHhc
Confidence            9999983

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=98.30  E-value=2.2e-06  Score=85.39  Aligned_cols=98  Identities=15%  Similarity=0.077  Sum_probs=59.2

Q ss_pred             hhhHhhhhhHHhhhcHHHHHHHHHHHHHHhhhcc---------ccCCCCchh-------hhHHHHHHHHHHhHHHHHHHH
Q 021445          213 DSIKVFGNEHYKKQDYKMALRKYRKALRYLDICW---------EKEGIDEGK-------SSSLRKTKSQIFTNSSACKLK  276 (312)
Q Consensus       213 ~~~k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~---------~~~~~~~~~-------~~~~~~~~~~~~~N~a~~~~k  276 (312)
                      ..+...|..++..|++++|+..|+++|+.-....         .....+.++       ...++|....+|.++|.+++.
T Consensus       332 ~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~  411 (615)
T TIGR00990       332 IALNLRGTFKCLKGKHLEALADLSKSIELDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFI  411 (615)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence            3466778888899999999999999997311100         000000000       112234445566666666666


Q ss_pred             cCCHHHHHHHHHHHHHcCCCchHHHHHHHHHhhh
Q 021445          277 LGDLKGALLDTEFAMRDGDDNVKALFRQGQVSII  310 (312)
Q Consensus       277 l~~~~~Ai~~~~~al~l~p~~~Ka~~rrg~a~~~  310 (312)
                      +|+|++|+.+++++++++|++..+++.+|.++..
T Consensus       412 ~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~~~  445 (615)
T TIGR00990       412 KGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYK  445 (615)
T ss_pred             cCCHHHHHHHHHHHHHcCccCHHHHHHHHHHHHH
Confidence            6666666666666666666666666666666654

>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=98.29  E-value=2.2e-06  Score=81.82  Aligned_cols=79  Identities=15%  Similarity=0.159  Sum_probs=39.8

Q ss_pred             hhhhHhhhhhHHhhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHcCCHHHHHHHHHHHH
Q 021445          212 VDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAM  291 (312)
Q Consensus       212 ~~~~k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al  291 (312)
                      +....+.|-.+-++|++++|+.+|++||+                  +.|..+.+|+|++.+|-.+|+-++|+.++++|+
T Consensus       388 aaa~nNLa~i~kqqgnl~~Ai~~Ykealr------------------I~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI  449 (966)
T KOG4626|consen  388 AAAHNNLASIYKQQGNLDDAIMCYKEALR------------------IKPTFADALSNMGNTYKEMGDVSAAIQCYTRAI  449 (966)
T ss_pred             hhhhhhHHHHHHhcccHHHHHHHHHHHHh------------------cCchHHHHHHhcchHHHHhhhHHHHHHHHHHHH
Confidence            44445555555555555555555555555                  444444444444444444444444444444444


Q ss_pred             HcCCCchHHHHHHHHHh
Q 021445          292 RDGDDNVKALFRQGQVS  308 (312)
Q Consensus       292 ~l~p~~~Ka~~rrg~a~  308 (312)
                      .++|..+.|+-..|.+|
T Consensus       450 ~~nPt~AeAhsNLasi~  466 (966)
T KOG4626|consen  450 QINPTFAEAHSNLASIY  466 (966)
T ss_pred             hcCcHHHHHHhhHHHHh
Confidence            44444444444444433

>PRK15331 chaperone protein SicA; Provisional

Probab=98.28  E-value=2.1e-06  Score=69.64  Aligned_cols=83  Identities=13%  Similarity=0.080  Sum_probs=74.1

Q ss_pred             hhhhhHhhhhhHHhhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHcCCHHHHHHHHHHH
Q 021445          211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA  290 (312)
Q Consensus       211 ~~~~~k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~a  290 (312)
                      ..+.+...|-.+|.+|+|++|...|+-..-                  .++.....+..+|+|+..+++|++|+..+..|
T Consensus        36 ~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~------------------~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A   97 (165)
T PRK15331         36 MMDGLYAHAYEFYNQGRLDEAETFFRFLCI------------------YDFYNPDYTMGLAAVCQLKKQFQKACDLYAVA   97 (165)
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHH------------------hCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            345678899999999999999999987665                  45556668899999999999999999999999


Q ss_pred             HHcCCCchHHHHHHHHHhhhh
Q 021445          291 MRDGDDNVKALFRQGQVSIIL  311 (312)
Q Consensus       291 l~l~p~~~Ka~~rrg~a~~~L  311 (312)
                      ..++++++...|+.|+||+.|
T Consensus        98 ~~l~~~dp~p~f~agqC~l~l  118 (165)
T PRK15331         98 FTLLKNDYRPVFFTGQCQLLM  118 (165)
T ss_pred             HHcccCCCCccchHHHHHHHh
Confidence            999999999999999999876

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=98.26  E-value=4.3e-06  Score=66.05  Aligned_cols=79  Identities=16%  Similarity=0.199  Sum_probs=66.9

Q ss_pred             hhhhHhhhhhHHhhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHcCCHHHHHHHHHHHH
Q 021445          212 VDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAM  291 (312)
Q Consensus       212 ~~~~k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al  291 (312)
                      ...+...|..+++.|+|.+|+..|.+++.                  +.|.....+.++|.|+..+|++++|+..+++++
T Consensus        51 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~------------------~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al  112 (135)
T TIGR02552        51 SRYWLGLAACCQMLKEYEEAIDAYALAAA------------------LDPDDPRPYFHAAECLLALGEPESALKALDLAI  112 (135)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHh------------------cCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            34567889999999999999999999998                  445567789999999999999999999999999


Q ss_pred             HcCCCchHHH--HHHHHHh
Q 021445          292 RDGDDNVKAL--FRQGQVS  308 (312)
Q Consensus       292 ~l~p~~~Ka~--~rrg~a~  308 (312)
                      +++|++.+..  .+++...
T Consensus       113 ~~~p~~~~~~~~~~~~~~~  131 (135)
T TIGR02552       113 EICGENPEYSELKERAEAM  131 (135)
T ss_pred             HhccccchHHHHHHHHHHH
Confidence            9999988744  4444433

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO

Probab=98.26  E-value=3.5e-06  Score=73.24  Aligned_cols=85  Identities=14%  Similarity=0.137  Sum_probs=73.3

Q ss_pred             hhhhhHhhhhhHHhhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHcCCHHHHHHHHHHH
Q 021445          211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA  290 (312)
Q Consensus       211 ~~~~~k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~a  290 (312)
                      .+..+.+.|..+++.|+|++|+..|++++.....               .+....++.++|.++++++++++|+..++++
T Consensus        32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~---------------~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~   96 (235)
T TIGR03302        32 PAEELYEEAKEALDSGDYTEAIKYFEALESRYPF---------------SPYAEQAQLDLAYAYYKSGDYAEAIAAADRF   96 (235)
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---------------chhHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence            5667899999999999999999999999983211               1334567899999999999999999999999


Q ss_pred             HHcCCCchH---HHHHHHHHhhh
Q 021445          291 MRDGDDNVK---ALFRQGQVSII  310 (312)
Q Consensus       291 l~l~p~~~K---a~~rrg~a~~~  310 (312)
                      ++.+|++..   +++.+|.++..
T Consensus        97 l~~~p~~~~~~~a~~~~g~~~~~  119 (235)
T TIGR03302        97 IRLHPNHPDADYAYYLRGLSNYN  119 (235)
T ss_pred             HHHCcCCCchHHHHHHHHHHHHH
Confidence            999998887   79999999865

Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).

>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]

Probab=98.21  E-value=2.4e-06  Score=76.34  Aligned_cols=82  Identities=22%  Similarity=0.229  Sum_probs=75.3

Q ss_pred             hhhhhHhhhhhHHhhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHcCCHHHHHHHHHHH
Q 021445          211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA  290 (312)
Q Consensus       211 ~~~~~k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~a  290 (312)
                      .+++..+.|++++.+++|..|+..|..|++                  .+|....++..||.+|+.||+-+.|+.|.+++
T Consensus        37 dvekhlElGk~lla~~Q~sDALt~yHaAve------------------~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rV   98 (504)
T KOG0624|consen   37 DVEKHLELGKELLARGQLSDALTHYHAAVE------------------GDPNNYQAIFRRATVYLAMGKSKAALQDLSRV   98 (504)
T ss_pred             HHHHHHHHHHHHHHhhhHHHHHHHHHHHHc------------------CCchhHHHHHHHHHHHhhhcCCccchhhHHHH
Confidence            466778999999999999999999999999                  78888889999999999999999999999999


Q ss_pred             HHcCCCchHHHHHHHHHhhh
Q 021445          291 MRDGDDNVKALFRQGQVSII  310 (312)
Q Consensus       291 l~l~p~~~Ka~~rrg~a~~~  310 (312)
                      |++.|+..-|...||..+++
T Consensus        99 lelKpDF~~ARiQRg~vllK  118 (504)
T KOG0624|consen   99 LELKPDFMAARIQRGVVLLK  118 (504)
T ss_pred             HhcCccHHHHHHHhchhhhh
Confidence            99999999999999988875

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW

Probab=98.20  E-value=8.5e-06  Score=69.22  Aligned_cols=82  Identities=17%  Similarity=0.076  Sum_probs=67.8

Q ss_pred             hhhhhHhhhhhHHhhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHcCCHHHHHHHHHHH
Q 021445          211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA  290 (312)
Q Consensus       211 ~~~~~k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~a  290 (312)
                      .+..+...|..++..|+|++|+..|.++++                  ..|....++.++|.++..+|++++|++.+.++
T Consensus        30 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~------------------~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a   91 (234)
T TIGR02521        30 AAKIRVQLALGYLEQGDLEVAKENLDKALE------------------HDPDDYLAYLALALYYQQLGELEKAEDSFRRA   91 (234)
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHH------------------hCcccHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            466677889999999999999999999988                  33444567888888888888888888888888


Q ss_pred             HHcCCCchHHHHHHHHHhhh
Q 021445          291 MRDGDDNVKALFRQGQVSII  310 (312)
Q Consensus       291 l~l~p~~~Ka~~rrg~a~~~  310 (312)
                      ++++|.+..+++..|.++..
T Consensus        92 l~~~~~~~~~~~~~~~~~~~  111 (234)
T TIGR02521        92 LTLNPNNGDVLNNYGTFLCQ  111 (234)
T ss_pred             HhhCCCCHHHHHHHHHHHHH
Confidence            88888888888888877654

Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.

>KOG0553 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.19  E-value=8e-06  Score=71.89  Aligned_cols=78  Identities=17%  Similarity=0.077  Sum_probs=69.5

Q ss_pred             hHhhhhhHHhhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 021445          215 IKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDG  294 (312)
Q Consensus       215 ~k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~l~  294 (312)
                      +-+++-++.+.|.|..|++.-..||.                  ++|..+.+|.-++.+|+-+|+|.+|++.+.+||++|
T Consensus       118 ycNRAAAy~~Lg~~~~AVkDce~Al~------------------iDp~yskay~RLG~A~~~~gk~~~A~~aykKaLeld  179 (304)
T KOG0553|consen  118 YCNRAAAYSKLGEYEDAVKDCESALS------------------IDPHYSKAYGRLGLAYLALGKYEEAIEAYKKALELD  179 (304)
T ss_pred             HHHHHHHHHHhcchHHHHHHHHHHHh------------------cChHHHHHHHHHHHHHHccCcHHHHHHHHHhhhccC
Confidence            46888899999999999999999999                  899999999999999999999999999999999999


Q ss_pred             CCchHHHHHHHHHhhh
Q 021445          295 DDNVKALFRQGQVSII  310 (312)
Q Consensus       295 p~~~Ka~~rrg~a~~~  310 (312)
                      |+|.-.+-.+..|-..
T Consensus       180 P~Ne~~K~nL~~Ae~~  195 (304)
T KOG0553|consen  180 PDNESYKSNLKIAEQK  195 (304)
T ss_pred             CCcHHHHHHHHHHHHH
Confidence            9998655555555443

>PRK10866 outer membrane biogenesis protein BamD; Provisional

Probab=98.18  E-value=7.7e-06  Score=71.77  Aligned_cols=85  Identities=13%  Similarity=0.090  Sum_probs=71.4

Q ss_pred             hhhhhHhhhhhHHhhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHcCCHHHHHHHHHHH
Q 021445          211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA  290 (312)
Q Consensus       211 ~~~~~k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~a  290 (312)
                      .++.+..+|..++++|+|++|+..|++.+.....               .+....+.+++|.+|+++++|++|+..+++.
T Consensus        31 ~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~---------------s~~a~~a~l~la~ayy~~~~y~~A~~~~e~f   95 (243)
T PRK10866         31 PPSEIYATAQQKLQDGNWKQAITQLEALDNRYPF---------------GPYSQQVQLDLIYAYYKNADLPLAQAAIDRF   95 (243)
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC---------------ChHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence            4555889999999999999999999999984221               2344556789999999999999999999999


Q ss_pred             HHcCCCch---HHHHHHHHHhhh
Q 021445          291 MRDGDDNV---KALFRQGQVSII  310 (312)
Q Consensus       291 l~l~p~~~---Ka~~rrg~a~~~  310 (312)
                      +++.|++.   .|+|.+|.++..
T Consensus        96 i~~~P~~~~~~~a~Y~~g~~~~~  118 (243)
T PRK10866         96 IRLNPTHPNIDYVLYMRGLTNMA  118 (243)
T ss_pred             HHhCcCCCchHHHHHHHHHhhhh
Confidence            99999876   489999988643

>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal

Probab=98.18  E-value=1.1e-05  Score=73.94  Aligned_cols=99  Identities=17%  Similarity=0.140  Sum_probs=84.1

Q ss_pred             hhHhhhhhHHhhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHcCCHHHHHHHHHHHHHc
Q 021445          214 SIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRD  293 (312)
Q Consensus       214 ~~k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~l  293 (312)
                      .....|-..|++++|..|+-.|..||+++....-..++.......+...-+-+--.++.||+++++++-|+.+..+.|.+
T Consensus       178 vAL~das~~yrqk~ya~Aa~rF~taLelcskg~a~~k~~~~~~~di~~vaSfIetklv~CYL~~rkpdlALnh~hrsI~l  257 (569)
T PF15015_consen  178 VALKDASSCYRQKKYAVAAGRFRTALELCSKGAALSKPFKASAEDISSVASFIETKLVTCYLRMRKPDLALNHSHRSINL  257 (569)
T ss_pred             HHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHHHHHHHHHhhhhcCCCchHHHHHhhhhhc
Confidence            34567889999999999999999999999876544444444444466666778889999999999999999999999999


Q ss_pred             CCCchHHHHHHHHHhhhhC
Q 021445          294 GDDNVKALFRQGQVSIILL  312 (312)
Q Consensus       294 ~p~~~Ka~~rrg~a~~~L~  312 (312)
                      +|.+..-++|+|.++..|+
T Consensus       258 nP~~frnHLrqAavfR~Le  276 (569)
T PF15015_consen  258 NPSYFRNHLRQAAVFRRLE  276 (569)
T ss_pred             CcchhhHHHHHHHHHHHHH
Confidence            9999999999999988774

>PRK11189 lipoprotein NlpI; Provisional

Probab=98.18  E-value=7e-06  Score=74.27  Aligned_cols=69  Identities=16%  Similarity=0.137  Sum_probs=64.6

Q ss_pred             hhhhHhhhhhHHhhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHcCCHHHHHHHHHHHH
Q 021445          212 VDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAM  291 (312)
Q Consensus       212 ~~~~k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al  291 (312)
                      +..+...|..+...|+|++|+..|.+||+                  ++|....++.|+|.+++.+|++++|++++++++
T Consensus        98 ~~a~~~lg~~~~~~g~~~~A~~~~~~Al~------------------l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al  159 (296)
T PRK11189         98 ADAYNYLGIYLTQAGNFDAAYEAFDSVLE------------------LDPTYNYAYLNRGIALYYGGRYELAQDDLLAFY  159 (296)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHH------------------hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence            56678999999999999999999999999                  677778899999999999999999999999999


Q ss_pred             HcCCCch
Q 021445          292 RDGDDNV  298 (312)
Q Consensus       292 ~l~p~~~  298 (312)
                      +++|+++
T Consensus       160 ~~~P~~~  166 (296)
T PRK11189        160 QDDPNDP  166 (296)
T ss_pred             HhCCCCH
Confidence            9999987

>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional

Probab=98.16  E-value=6.9e-06  Score=66.29  Aligned_cols=81  Identities=14%  Similarity=0.144  Sum_probs=67.2

Q ss_pred             hhhhHhhhhhHHhhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHcCCHHHHHHHHHHHH
Q 021445          212 VDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAM  291 (312)
Q Consensus       212 ~~~~k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al  291 (312)
                      +.-+...|-.+-..|+|++|+..|.+|+.                  +++.....+.|.|.|++++|+.+.|.+.+..|+
T Consensus        69 ~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~------------------L~~ddp~~~~~ag~c~L~lG~~~~A~~aF~~Ai  130 (157)
T PRK15363         69 FDYWFRLGECCQAQKHWGEAIYAYGRAAQ------------------IKIDAPQAPWAAAECYLACDNVCYAIKALKAVV  130 (157)
T ss_pred             HHHHHHHHHHHHHHhhHHHHHHHHHHHHh------------------cCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            34467888888899999999999999999                  667778899999999999999999999999999


Q ss_pred             HcCCC--chHHHHHHHHHhhh
Q 021445          292 RDGDD--NVKALFRQGQVSII  310 (312)
Q Consensus       292 ~l~p~--~~Ka~~rrg~a~~~  310 (312)
                      .+-..  ....+..||++++.
T Consensus       131 ~~~~~~~~~~~l~~~A~~~L~  151 (157)
T PRK15363        131 RICGEVSEHQILRQRAEKMLQ  151 (157)
T ss_pred             HHhccChhHHHHHHHHHHHHH
Confidence            77522  33466667776654

>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A

Probab=98.11  E-value=1.9e-05  Score=67.38  Aligned_cols=86  Identities=17%  Similarity=0.131  Sum_probs=69.3

Q ss_pred             hhhhhHhhhhhHHhhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHcCCHHHHHHHHHHH
Q 021445          211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA  290 (312)
Q Consensus       211 ~~~~~k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~a  290 (312)
                      .++.+.+.|..++..|+|.+|+..|++.+.....               .+.-..+.+.+|.+++++++|.+|+..+++.
T Consensus         4 ~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~---------------s~~a~~A~l~la~a~y~~~~y~~A~~~~~~f   68 (203)
T PF13525_consen    4 TAEALYQKALEALQQGDYEEAIKLFEKLIDRYPN---------------SPYAPQAQLMLAYAYYKQGDYEEAIAAYERF   68 (203)
T ss_dssp             -HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT---------------STTHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC---------------ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            4567899999999999999999999999985322               2344557889999999999999999999999


Q ss_pred             HHcCCCchH---HHHHHHHHhhhh
Q 021445          291 MRDGDDNVK---ALFRQGQVSIIL  311 (312)
Q Consensus       291 l~l~p~~~K---a~~rrg~a~~~L  311 (312)
                      ++..|++.+   |+|.+|.+++.+
T Consensus        69 i~~yP~~~~~~~A~Y~~g~~~~~~   92 (203)
T PF13525_consen   69 IKLYPNSPKADYALYMLGLSYYKQ   92 (203)
T ss_dssp             HHH-TT-TTHHHHHHHHHHHHHHH
T ss_pred             HHHCCCCcchhhHHHHHHHHHHHh
Confidence            999998774   999999998754

>PRK12370 invasion protein regulator; Provisional

Probab=98.10  E-value=1e-05  Score=79.50  Aligned_cols=76  Identities=13%  Similarity=0.074  Sum_probs=57.5

Q ss_pred             HhhhhhHHhhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHcCCHHHHHHHHHHHHHcCC
Q 021445          216 KVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGD  295 (312)
Q Consensus       216 k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~l~p  295 (312)
                      ...|..+...|++++|+..|++|++                  ++|....+|.++|.++..+|++++|+..++++++++|
T Consensus       342 ~~lg~~~~~~g~~~~A~~~~~~Al~------------------l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P  403 (553)
T PRK12370        342 GLLGLINTIHSEYIVGSLLFKQANL------------------LSPISADIKYYYGWNLFMAGQLEEALQTINECLKLDP  403 (553)
T ss_pred             HHHHHHHHHccCHHHHHHHHHHHHH------------------hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC
Confidence            4556667777888888888888887                  5666777888888888888888888888888888888


Q ss_pred             CchHHHHHHHHHhh
Q 021445          296 DNVKALFRQGQVSI  309 (312)
Q Consensus       296 ~~~Ka~~rrg~a~~  309 (312)
                      .+..+++.++.+++
T Consensus       404 ~~~~~~~~~~~~~~  417 (553)
T PRK12370        404 TRAAAGITKLWITY  417 (553)
T ss_pred             CChhhHHHHHHHHH
Confidence            87776655554443

>KOG4234 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.09  E-value=1.2e-05  Score=66.83  Aligned_cols=76  Identities=16%  Similarity=0.133  Sum_probs=67.2

Q ss_pred             hhhhHhhhhhHHhhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHcCCHHHHHHHHHHHH
Q 021445          212 VDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAM  291 (312)
Q Consensus       212 ~~~~k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al  291 (312)
                      .--+-++|-.+.|.++|+.|+...+|||+                  +.|.+..++..||.+|-++.+|++|++|+.+++
T Consensus       134 sIly~Nraaa~iKl~k~e~aI~dcsKaie------------------l~pty~kAl~RRAeayek~ek~eealeDyKki~  195 (271)
T KOG4234|consen  134 SILYSNRAAALIKLRKWESAIEDCSKAIE------------------LNPTYEKALERRAEAYEKMEKYEEALEDYKKIL  195 (271)
T ss_pred             HHHHhhhHHHHHHhhhHHHHHHHHHhhHh------------------cCchhHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence            33457899999999999999999999999                  788889999999999999999999999999999


Q ss_pred             HcCCCchHHHHHHHHH
Q 021445          292 RDGDDNVKALFRQGQV  307 (312)
Q Consensus       292 ~l~p~~~Ka~~rrg~a  307 (312)
                      ++||.+..|  |+|.+
T Consensus       196 E~dPs~~ea--r~~i~  209 (271)
T KOG4234|consen  196 ESDPSRREA--REAIA  209 (271)
T ss_pred             HhCcchHHH--HHHHH
Confidence            999988744  44443

>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=98.09  E-value=1e-05  Score=80.96  Aligned_cols=81  Identities=7%  Similarity=-0.077  Sum_probs=67.8

Q ss_pred             hhhhHhhhhhHHhhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHcCCHHHHHHHHHHHH
Q 021445          212 VDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAM  291 (312)
Q Consensus       212 ~~~~k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al  291 (312)
                      +..+...++.+++.+++++|+..+.+++.                  ..|.....++++|.|+.++|+|++|++.+++++
T Consensus       120 ~~a~~~~a~~L~~~~~~eeA~~~~~~~l~------------------~~p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~  181 (694)
T PRK15179        120 SEAFILMLRGVKRQQGIEAGRAEIELYFS------------------GGSSSAREILLEAKSWDEIGQSEQADACFERLS  181 (694)
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHhh------------------cCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHH
Confidence            44567788888888888888888888888                  667778888889999999999999999999999


Q ss_pred             HcCCCchHHHHHHHHHhhh
Q 021445          292 RDGDDNVKALFRQGQVSII  310 (312)
Q Consensus       292 ~l~p~~~Ka~~rrg~a~~~  310 (312)
                      ..+|+++++|+.+|.++..
T Consensus       182 ~~~p~~~~~~~~~a~~l~~  200 (694)
T PRK15179        182 RQHPEFENGYVGWAQSLTR  200 (694)
T ss_pred             hcCCCcHHHHHHHHHHHHH
Confidence            8888888999988888864

>KOG1125 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.08  E-value=3.3e-06  Score=79.88  Aligned_cols=78  Identities=13%  Similarity=0.124  Sum_probs=72.5

Q ss_pred             HhhhhhHHhhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHcCCHHHHHHHHHHHHHcCC
Q 021445          216 KVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGD  295 (312)
Q Consensus       216 k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~l~p  295 (312)
                      --.|--++-.++|+.|+.||+.||.                  .+|....+|+.+++++..-.+..+||..+++||+|.|
T Consensus       434 ~~LGVLy~ls~efdraiDcf~~AL~------------------v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP  495 (579)
T KOG1125|consen  434 SGLGVLYNLSGEFDRAVDCFEAALQ------------------VKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQP  495 (579)
T ss_pred             hhhHHHHhcchHHHHHHHHHHHHHh------------------cCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCC
Confidence            3567788889999999999999999                  7888899999999999999999999999999999999


Q ss_pred             CchHHHHHHHHHhhhh
Q 021445          296 DNVKALFRQGQVSIIL  311 (312)
Q Consensus       296 ~~~Ka~~rrg~a~~~L  311 (312)
                      .++.++|..|.+++.|
T Consensus       496 ~yVR~RyNlgIS~mNl  511 (579)
T KOG1125|consen  496 GYVRVRYNLGISCMNL  511 (579)
T ss_pred             Ceeeeehhhhhhhhhh
Confidence            9999999999998764

>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional

Probab=98.06  E-value=1.2e-05  Score=83.31  Aligned_cols=80  Identities=16%  Similarity=0.075  Sum_probs=61.5

Q ss_pred             hhHhhhhhHHhhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHcCCHHHHHHHHHHHHHc
Q 021445          214 SIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRD  293 (312)
Q Consensus       214 ~~k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~l  293 (312)
                      .+...|..+.+.|++++|+..|.+++.                  +.|....++.|+|.++..+|++++|+..+.+|+++
T Consensus       611 a~~~LA~~l~~lG~~deA~~~l~~AL~------------------l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l  672 (987)
T PRK09782        611 AYVARATIYRQRHNVPAAVSDLRAALE------------------LEPNNSNYQAALGYALWDSGDIAQSREMLERAHKG  672 (987)
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHH------------------hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence            345556666677777777777777776                  56666778888888888888888888888888888


Q ss_pred             CCCchHHHHHHHHHhhhh
Q 021445          294 GDDNVKALFRQGQVSIIL  311 (312)
Q Consensus       294 ~p~~~Ka~~rrg~a~~~L  311 (312)
                      +|+++.+++.+|.++..+
T Consensus       673 ~P~~~~a~~nLA~al~~l  690 (987)
T PRK09782        673 LPDDPALIRQLAYVNQRL  690 (987)
T ss_pred             CCCCHHHHHHHHHHHHHC
Confidence            888888888888887654

>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=98.00  E-value=1.5e-05  Score=46.98  Aligned_cols=33  Identities=18%  Similarity=0.175  Sum_probs=30.2

Q ss_pred             HHHhHHHHHHHHcCCHHHHHHHHHHHHHcCCCc
Q 021445          265 QIFTNSSACKLKLGDLKGALLDTEFAMRDGDDN  297 (312)
Q Consensus       265 ~~~~N~a~~~~kl~~~~~Ai~~~~~al~l~p~~  297 (312)
                      .++.++|.+++++|+|++|+++++++++++|++
T Consensus         2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~   34 (34)
T PF07719_consen    2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN   34 (34)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence            478899999999999999999999999999986

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....

>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT

Probab=97.99  E-value=0.00021  Score=54.54  Aligned_cols=92  Identities=16%  Similarity=0.082  Sum_probs=70.4

Q ss_pred             hhHhhhhhHHhhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHcCCHHHHHHHHHHHH--
Q 021445          214 SIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAM--  291 (312)
Q Consensus       214 ~~k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al--  291 (312)
                      ....+|...++.|-|++|...|++|++.-...|+.+.      -.-.-....||.-+|.++.+||+|++++..++++|  
T Consensus        11 ~aLs~ae~ql~~g~~~eAa~s~r~AM~~srtiP~eEa------FDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~Y   84 (144)
T PF12968_consen   11 MALSDAERQLQDGAYEEAAASCRKAMEVSRTIPAEEA------FDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRY   84 (144)
T ss_dssp             HHHHHHHHHHHHT-HHHHHHHHHHHHHHHTTS-TTS---------HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHHHHHhccCChHhh------cccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHH
Confidence            3457788888999999999999999998655544333      33667778899999999999999999999999999  


Q ss_pred             -----HcCCC----chHHHHHHHHHhhhh
Q 021445          292 -----RDGDD----NVKALFRQGQVSIIL  311 (312)
Q Consensus       292 -----~l~p~----~~Ka~~rrg~a~~~L  311 (312)
                           +++.+    |..+-+.||.|+..+
T Consensus        85 FNRRGEL~qdeGklWIaaVfsra~Al~~~  113 (144)
T PF12968_consen   85 FNRRGELHQDEGKLWIAAVFSRAVALEGL  113 (144)
T ss_dssp             HHHH--TTSTHHHHHHHHHHHHHHHHHHT
T ss_pred             HhhccccccccchhHHHHHHHHHHHHHhc
Confidence                 55544    666778899988654

The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.

>PF13428 TPR_14: Tetratricopeptide repeat

Probab=97.96  E-value=2.3e-05  Score=49.42  Aligned_cols=42  Identities=17%  Similarity=0.037  Sum_probs=39.6

Q ss_pred             HHhHHHHHHHHcCCHHHHHHHHHHHHHcCCCchHHHHHHHHH
Q 021445          266 IFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQV  307 (312)
Q Consensus       266 ~~~N~a~~~~kl~~~~~Ai~~~~~al~l~p~~~Ka~~rrg~a  307 (312)
                      ++..+|.+|..+|++++|++.++++|+.+|+++.+|+..|.+
T Consensus         3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~l   44 (44)
T PF13428_consen    3 AWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQL   44 (44)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhhC
Confidence            678999999999999999999999999999999999998863

>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=97.95  E-value=2.8e-05  Score=77.86  Aligned_cols=83  Identities=7%  Similarity=0.006  Sum_probs=78.3

Q ss_pred             hhhhhHhhhhhHHhhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHcCCHHHHHHHHHHH
Q 021445          211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA  290 (312)
Q Consensus       211 ~~~~~k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~a  290 (312)
                      .++.+...|......|+|++|...+..+++                  +.|....+..|++.++.+++++++|+..|+++
T Consensus        85 ~~~~~~~La~i~~~~g~~~ea~~~l~~~~~------------------~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~  146 (694)
T PRK15179         85 TELFQVLVARALEAAHRSDEGLAVWRGIHQ------------------RFPDSSEAFILMLRGVKRQQGIEAGRAEIELY  146 (694)
T ss_pred             cHHHHHHHHHHHHHcCCcHHHHHHHHHHHh------------------hCCCcHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence            466688899999999999999999999999                  78889999999999999999999999999999


Q ss_pred             HHcCCCchHHHHHHHHHhhhh
Q 021445          291 MRDGDDNVKALFRQGQVSIIL  311 (312)
Q Consensus       291 l~l~p~~~Ka~~rrg~a~~~L  311 (312)
                      |..+|+++.+++.+|.++.++
T Consensus       147 l~~~p~~~~~~~~~a~~l~~~  167 (694)
T PRK15179        147 FSGGSSSAREILLEAKSWDEI  167 (694)
T ss_pred             hhcCCCCHHHHHHHHHHHHHh
Confidence            999999999999999999865

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW

Probab=97.93  E-value=5.6e-05  Score=64.13  Aligned_cols=81  Identities=17%  Similarity=0.298  Sum_probs=60.5

Q ss_pred             hHhhhhhHHhhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 021445          215 IKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDG  294 (312)
Q Consensus       215 ~k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~l~  294 (312)
                      +...|..++..|+|++|+..|.+++...                ..+.....+.++|.++.++|++++|+..+.+++..+
T Consensus       102 ~~~~~~~~~~~g~~~~A~~~~~~~~~~~----------------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~  165 (234)
T TIGR02521       102 LNNYGTFLCQQGKYEQAMQQFEQAIEDP----------------LYPQPARSLENAGLCALKAGDFDKAEKYLTRALQID  165 (234)
T ss_pred             HHHHHHHHHHcccHHHHHHHHHHHHhcc----------------ccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence            4455666677777777777777776521                012234567888999999999999999999999999


Q ss_pred             CCchHHHHHHHHHhhhh
Q 021445          295 DDNVKALFRQGQVSIIL  311 (312)
Q Consensus       295 p~~~Ka~~rrg~a~~~L  311 (312)
                      |.+..+++.+|.++..+
T Consensus       166 ~~~~~~~~~la~~~~~~  182 (234)
T TIGR02521       166 PQRPESLLELAELYYLR  182 (234)
T ss_pred             cCChHHHHHHHHHHHHc
Confidence            99998998888887653

Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.

>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=97.91  E-value=2.9e-05  Score=66.05  Aligned_cols=84  Identities=18%  Similarity=0.169  Sum_probs=69.2

Q ss_pred             hhhhhHhhhhhHHhhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHcCCHHHHHHHHHHH
Q 021445          211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA  290 (312)
Q Consensus       211 ~~~~~k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~a  290 (312)
                      ..+.+.+-|--|..+|+|++|...|.+|+.--.                -+.-+..|-|++.|.+++|+++.|.+++.++
T Consensus       102 ~GdVLNNYG~FLC~qg~~~eA~q~F~~Al~~P~----------------Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~ra  165 (250)
T COG3063         102 NGDVLNNYGAFLCAQGRPEEAMQQFERALADPA----------------YGEPSDTLENLGLCALKAGQFDQAEEYLKRA  165 (250)
T ss_pred             ccchhhhhhHHHHhCCChHHHHHHHHHHHhCCC----------------CCCcchhhhhhHHHHhhcCCchhHHHHHHHH
Confidence            345577888888888899999999988887321                2344668899999999999999999999999


Q ss_pred             HHcCCCchHHHHHHHHHhhh
Q 021445          291 MRDGDDNVKALFRQGQVSII  310 (312)
Q Consensus       291 l~l~p~~~Ka~~rrg~a~~~  310 (312)
                      |++||++.-+...+++-++.
T Consensus       166 L~~dp~~~~~~l~~a~~~~~  185 (250)
T COG3063         166 LELDPQFPPALLELARLHYK  185 (250)
T ss_pred             HHhCcCCChHHHHHHHHHHh
Confidence            99999999888888776653

>PLN02789 farnesyltranstransferase

Probab=97.90  E-value=3.7e-05  Score=70.16  Aligned_cols=72  Identities=18%  Similarity=0.134  Sum_probs=56.5

Q ss_pred             HHhhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHcC-CHHHHHHHHHHHHHcCCCchHH
Q 021445          222 HYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLG-DLKGALLDTEFAMRDGDDNVKA  300 (312)
Q Consensus       222 ~~~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~-~~~~Ai~~~~~al~l~p~~~Ka  300 (312)
                      +.+.+++++|+..+.++|+                  ++|....++.+|+.++.+++ ++++++..++++++.+|++..+
T Consensus        47 l~~~e~serAL~lt~~aI~------------------lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqa  108 (320)
T PLN02789         47 YASDERSPRALDLTADVIR------------------LNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQI  108 (320)
T ss_pred             HHcCCCCHHHHHHHHHHHH------------------HCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHH
Confidence            3456789999999999998                  67777778888888888877 5678888888888888888888


Q ss_pred             HHHHHHHhhhh
Q 021445          301 LFRQGQVSIIL  311 (312)
Q Consensus       301 ~~rrg~a~~~L  311 (312)
                      |+.|+.++..|
T Consensus       109 W~~R~~~l~~l  119 (320)
T PLN02789        109 WHHRRWLAEKL  119 (320)
T ss_pred             hHHHHHHHHHc
Confidence            88777666543

>PLN02789 farnesyltranstransferase

Probab=97.89  E-value=5.1e-05  Score=69.23  Aligned_cols=53  Identities=13%  Similarity=0.021  Sum_probs=48.6

Q ss_pred             HHHHHHHHHhHHHHHHHHcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHhhhh
Q 021445          259 LRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQVSIIL  311 (312)
Q Consensus       259 ~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~l~p~~~Ka~~rrg~a~~~L  311 (312)
                      +++....++.+|+.++.++++|++|+++|+++|++||.|..||+.|+.++..+
T Consensus       137 ~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~  189 (320)
T PLN02789        137 LDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVITRS  189 (320)
T ss_pred             hCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhc
Confidence            56778889999999999999999999999999999999999999999887543

>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]

Probab=97.87  E-value=2.2e-05  Score=75.45  Aligned_cols=83  Identities=17%  Similarity=0.168  Sum_probs=76.0

Q ss_pred             hhhhhHhhhhhHHhhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHcCCHHHHHHHHHHH
Q 021445          211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA  290 (312)
Q Consensus       211 ~~~~~k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~a  290 (312)
                      .-.+|.-.|-.+.|+++|+.|.-.|++|++                  ++|...++.+-.+..+.++|+.++|+..+++|
T Consensus       488 hYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~------------------INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A  549 (638)
T KOG1126|consen  488 HYNAWYGLGTVYLKQEKLEFAEFHFQKAVE------------------INPSNSVILCHIGRIQHQLKRKDKALQLYEKA  549 (638)
T ss_pred             hhHHHHhhhhheeccchhhHHHHHHHhhhc------------------CCccchhHHhhhhHHHHHhhhhhHHHHHHHHH
Confidence            445678888889999999999999999998                  88999999999999999999999999999999


Q ss_pred             HHcCCCchHHHHHHHHHhhhh
Q 021445          291 MRDGDDNVKALFRQGQVSIIL  311 (312)
Q Consensus       291 l~l~p~~~Ka~~rrg~a~~~L  311 (312)
                      +.+||.++-+-|.||..+..|
T Consensus       550 ~~ld~kn~l~~~~~~~il~~~  570 (638)
T KOG1126|consen  550 IHLDPKNPLCKYHRASILFSL  570 (638)
T ss_pred             HhcCCCCchhHHHHHHHHHhh
Confidence            999999999999999998765

>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=97.86  E-value=3.6e-05  Score=71.40  Aligned_cols=77  Identities=16%  Similarity=0.182  Sum_probs=71.9

Q ss_pred             hhhhhHHhhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Q 021445          217 VFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDD  296 (312)
Q Consensus       217 ~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~l~p~  296 (312)
                      --||-+--+++.++|+..|++||+                  ++|....+|.-++.=|+.|++-..|++.+.+|++++|.
T Consensus       335 iIaNYYSlr~eHEKAv~YFkRALk------------------LNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~  396 (559)
T KOG1155|consen  335 IIANYYSLRSEHEKAVMYFKRALK------------------LNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDINPR  396 (559)
T ss_pred             eehhHHHHHHhHHHHHHHHHHHHh------------------cCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCch
Confidence            457777788999999999999999                  88999999999999999999999999999999999999


Q ss_pred             chHHHHHHHHHhhhh
Q 021445          297 NVKALFRQGQVSIIL  311 (312)
Q Consensus       297 ~~Ka~~rrg~a~~~L  311 (312)
                      +.+|||-.|++|..|
T Consensus       397 DyRAWYGLGQaYeim  411 (559)
T KOG1155|consen  397 DYRAWYGLGQAYEIM  411 (559)
T ss_pred             hHHHHhhhhHHHHHh
Confidence            999999999999765

>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=97.85  E-value=1.5e-05  Score=78.21  Aligned_cols=96  Identities=22%  Similarity=0.379  Sum_probs=85.2

Q ss_pred             CChhhhhhhhhhhHhhhhhHHhhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHcC--CH
Q 021445          203 NELSWWMNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLG--DL  280 (312)
Q Consensus       203 ~~~~~~~~~~~~~k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~--~~  280 (312)
                      .+....+..+..++++||.+|..++|.+|...|..++.++..              -......+++|++.|++.++  +|
T Consensus        44 ~di~v~l~ra~~~~~E~n~~~~K~d~~~~~~~~~~~~~llp~--------------~~~~~a~~~~~~~s~~m~~~l~~~  109 (748)
T KOG4151|consen   44 EDIEVFLSRALELKEEGNKLFQKRDYEGAMFRYDCAIKLLPK--------------DHHVVATLRSNQASCYMQLGLGEY  109 (748)
T ss_pred             cchHHHHHHHHHHHhhhhHHhhhhhhhccchhhhhhheeccc--------------cchhhhhHHHHHHHHHhhcCccch
Confidence            466777889999999999999999999999999999986543              34567889999999999865  99


Q ss_pred             HHHHHHHHHHHHcCCCchHHHHHHHHHhhhhC
Q 021445          281 KGALLDTEFAMRDGDDNVKALFRQGQVSIILL  312 (312)
Q Consensus       281 ~~Ai~~~~~al~l~p~~~Ka~~rrg~a~~~L~  312 (312)
                      .+++.+|+-|+...|...+++++|+.+|..++
T Consensus       110 ~~~~~E~~la~~~~p~i~~~Ll~r~~~y~al~  141 (748)
T KOG4151|consen  110 PKAIPECELALESQPRISKALLKRARKYEALN  141 (748)
T ss_pred             hhhcCchhhhhhccchHHHHHhhhhhHHHHHH
Confidence            99999999999999999999999999998763

>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]

Probab=97.82  E-value=5.3e-05  Score=65.52  Aligned_cols=78  Identities=18%  Similarity=0.164  Sum_probs=72.1

Q ss_pred             hhHhhhhhHHhhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHcCCHHHHHHHHHHHHHc
Q 021445          214 SIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRD  293 (312)
Q Consensus       214 ~~k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~l  293 (312)
                      .++.+|..++++|+|.+|+..+++|..                  +.|....+|+-++.+|.++|++++|-..+.+++++
T Consensus       102 ll~~~gk~~~~~g~~~~A~~~~rkA~~------------------l~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L  163 (257)
T COG5010         102 LLAAQGKNQIRNGNFGEAVSVLRKAAR------------------LAPTDWEAWNLLGAALDQLGRFDEARRAYRQALEL  163 (257)
T ss_pred             HHHHHHHHHHHhcchHHHHHHHHHHhc------------------cCCCChhhhhHHHHHHHHccChhHHHHHHHHHHHh
Confidence            456699999999999999999999999                  66777889999999999999999999999999999


Q ss_pred             CCCchHHHHHHHHHhh
Q 021445          294 GDDNVKALFRQGQVSI  309 (312)
Q Consensus       294 ~p~~~Ka~~rrg~a~~  309 (312)
                      .|+.++++-+.|..|+
T Consensus       164 ~~~~p~~~nNlgms~~  179 (257)
T COG5010         164 APNEPSIANNLGMSLL  179 (257)
T ss_pred             ccCCchhhhhHHHHHH
Confidence            9999999999888765

>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A

Probab=97.80  E-value=6.9e-05  Score=54.24  Aligned_cols=59  Identities=24%  Similarity=0.341  Sum_probs=48.1

Q ss_pred             hhhHhhhhhHHhhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHcCCHHHHHHHHHHH
Q 021445          213 DSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA  290 (312)
Q Consensus       213 ~~~k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~a  290 (312)
                      ..+...|..+|+.|+|++|+..+++ ++                  ..+....++.-+|.|++++++|++|++...+|
T Consensus        26 ~~~~~la~~~~~~~~y~~A~~~~~~-~~------------------~~~~~~~~~~l~a~~~~~l~~y~eAi~~l~~~   84 (84)
T PF12895_consen   26 AYLYNLAQCYFQQGKYEEAIELLQK-LK------------------LDPSNPDIHYLLARCLLKLGKYEEAIKALEKA   84 (84)
T ss_dssp             HHHHHHHHHHHHTTHHHHHHHHHHC-HT------------------HHHCHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHH-hC------------------CCCCCHHHHHHHHHHHHHhCCHHHHHHHHhcC
Confidence            3456689999999999999999998 55                  44545566667799999999999999998875

>KOG2003 consensus TPR repeat-containing protein [General function prediction only]

Probab=97.80  E-value=3.3e-05  Score=71.47  Aligned_cols=83  Identities=19%  Similarity=0.128  Sum_probs=70.2

Q ss_pred             hhhhHhhhhhHHhhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHcCCHHHHHHHHHHHH
Q 021445          212 VDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAM  291 (312)
Q Consensus       212 ~~~~k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al  291 (312)
                      +..+-++||..|..|+|++|++.|.+||.                  -+.....++.|.++++-++++.++|++++-+.-
T Consensus       490 ~~a~~nkgn~~f~ngd~dka~~~ykeal~------------------ndasc~ealfniglt~e~~~~ldeald~f~klh  551 (840)
T KOG2003|consen  490 AAALTNKGNIAFANGDLDKAAEFYKEALN------------------NDASCTEALFNIGLTAEALGNLDEALDCFLKLH  551 (840)
T ss_pred             HHHhhcCCceeeecCcHHHHHHHHHHHHc------------------CchHHHHHHHHhcccHHHhcCHHHHHHHHHHHH
Confidence            44568999999999999999999999998                  456677788899999999999999998888876


Q ss_pred             HcCCCchHHHHHHHHHhhhhC
Q 021445          292 RDGDDNVKALFRQGQVSIILL  312 (312)
Q Consensus       292 ~l~p~~~Ka~~rrg~a~~~L~  312 (312)
                      .+--+++..++..|..|..||
T Consensus       552 ~il~nn~evl~qianiye~le  572 (840)
T KOG2003|consen  552 AILLNNAEVLVQIANIYELLE  572 (840)
T ss_pred             HHHHhhHHHHHHHHHHHHHhh
Confidence            666678888888888887664

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional

Probab=97.80  E-value=7.5e-05  Score=63.47  Aligned_cols=67  Identities=18%  Similarity=0.147  Sum_probs=61.6

Q ss_pred             hhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHcCCHHHHHHHHHHHHHcCCCchHHHHHH
Q 021445          225 KQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQ  304 (312)
Q Consensus       225 ~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~l~p~~~Ka~~rr  304 (312)
                      .++.++++..+.++|+                  .+|.....|.++|.+|+.++++++|+..+.+|++++|+++.+++..
T Consensus        52 ~~~~~~~i~~l~~~L~------------------~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~l  113 (198)
T PRK10370         52 QQTPEAQLQALQDKIR------------------ANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAAL  113 (198)
T ss_pred             chhHHHHHHHHHHHHH------------------HCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence            5677888888999988                  6778888999999999999999999999999999999999999999


Q ss_pred             HHHhh
Q 021445          305 GQVSI  309 (312)
Q Consensus       305 g~a~~  309 (312)
                      |.+++
T Consensus       114 A~aL~  118 (198)
T PRK10370        114 ATVLY  118 (198)
T ss_pred             HHHHH
Confidence            99863

>PRK12370 invasion protein regulator; Provisional

Probab=97.80  E-value=7.1e-05  Score=73.63  Aligned_cols=70  Identities=13%  Similarity=-0.071  Sum_probs=63.5

Q ss_pred             hhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHcCCHHHHHHHHHHHHHcCCCchHHHHH
Q 021445          224 KKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFR  303 (312)
Q Consensus       224 ~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~l~p~~~Ka~~r  303 (312)
                      ..+++++|+..+++|++                  ++|....+|.++|.++..+|++++|+..+++|++++|+++.+|+.
T Consensus       316 ~~~~~~~A~~~~~~Al~------------------ldP~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~  377 (553)
T PRK12370        316 KQNAMIKAKEHAIKATE------------------LDHNNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYY  377 (553)
T ss_pred             cchHHHHHHHHHHHHHh------------------cCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHH
Confidence            34568999999999999                  677778899999999999999999999999999999999999999


Q ss_pred             HHHHhhhh
Q 021445          304 QGQVSIIL  311 (312)
Q Consensus       304 rg~a~~~L  311 (312)
                      +|.++..+
T Consensus       378 lg~~l~~~  385 (553)
T PRK12370        378 YGWNLFMA  385 (553)
T ss_pred             HHHHHHHC
Confidence            99998754

>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional

Probab=97.77  E-value=7.1e-05  Score=77.80  Aligned_cols=80  Identities=9%  Similarity=0.069  Sum_probs=71.0

Q ss_pred             hhhhHhhhhhHHhhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHcCCHHHHHHHHHHHH
Q 021445          212 VDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAM  291 (312)
Q Consensus       212 ~~~~k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al  291 (312)
                      +..+.+.|..+...|++++|+..|.+|++                  +.|....++.|+|.++.++|++++|+..+++|+
T Consensus       643 ~~a~~nLG~aL~~~G~~eeAi~~l~~AL~------------------l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al  704 (987)
T PRK09782        643 SNYQAALGYALWDSGDIAQSREMLERAHK------------------GLPDDPALIRQLAYVNQRLDDMAATQHYARLVI  704 (987)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHH------------------hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence            34467888999999999999999999999                  677788899999999999999999999999999


Q ss_pred             HcCCCchHHHHHHHHHhh
Q 021445          292 RDGDDNVKALFRQGQVSI  309 (312)
Q Consensus       292 ~l~p~~~Ka~~rrg~a~~  309 (312)
                      +++|+++...+..|..+.
T Consensus       705 ~l~P~~a~i~~~~g~~~~  722 (987)
T PRK09782        705 DDIDNQALITPLTPEQNQ  722 (987)
T ss_pred             hcCCCCchhhhhhhHHHH
Confidence            999999888776665543

>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional

Probab=97.76  E-value=3.7e-05  Score=71.87  Aligned_cols=53  Identities=15%  Similarity=0.088  Sum_probs=49.5

Q ss_pred             HHHHHHHHHhHHHHHHHHcCCHHHHHHHHHHHHHcCCCchHH---HHHHHHHhhhh
Q 021445          259 LRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKA---LFRQGQVSIIL  311 (312)
Q Consensus       259 ~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~l~p~~~Ka---~~rrg~a~~~L  311 (312)
                      .+|.....++|+|.+|+++|+|++|+..|++||+++|++..+   ||.+|.||..|
T Consensus        70 ~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~L  125 (453)
T PLN03098         70 ADVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYR  125 (453)
T ss_pred             CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHc
Confidence            567888899999999999999999999999999999999965   99999999876

>PRK15174 Vi polysaccharide export protein VexE; Provisional

Probab=97.75  E-value=0.0001  Score=74.01  Aligned_cols=79  Identities=8%  Similarity=0.015  Sum_probs=52.5

Q ss_pred             hhHhhhhhHHhhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHcCCHHHHHHHHHHHHHc
Q 021445          214 SIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRD  293 (312)
Q Consensus       214 ~~k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~l  293 (312)
                      .+...|..+++.|++++|+..|++++.                  +.|....++.+++.++.++|++++|+..+.+++..
T Consensus       286 a~~~lg~~l~~~g~~~eA~~~l~~al~------------------l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~  347 (656)
T PRK15174        286 IVTLYADALIRTGQNEKAIPLLQQSLA------------------THPDLPYVRAMYARALRQVGQYTAASDEFVQLARE  347 (656)
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHH------------------hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence            345556666666677777766666666                  34445556677777777777777777777777777


Q ss_pred             CCCchHHHHHHHHHhhh
Q 021445          294 GDDNVKALFRQGQVSII  310 (312)
Q Consensus       294 ~p~~~Ka~~rrg~a~~~  310 (312)
                      +|.+..+++++|.++..
T Consensus       348 ~P~~~~~~~~~a~al~~  364 (656)
T PRK15174        348 KGVTSKWNRYAAAALLQ  364 (656)
T ss_pred             CccchHHHHHHHHHHHH
Confidence            77776666666665543

>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]

Probab=97.73  E-value=2.6e-05  Score=69.91  Aligned_cols=91  Identities=11%  Similarity=0.074  Sum_probs=68.8

Q ss_pred             hhhhhhhhhhHhhhhhHHhhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHcCCHHHHHH
Q 021445          206 SWWMNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALL  285 (312)
Q Consensus       206 ~~~~~~~~~~k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~  285 (312)
                      -..++.+.+..+.+.+...+++|.++++.+++.++.          +++    ..+.....+--++.|+-+-+++.+||.
T Consensus       263 YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~----------ep~----~~~ir~~~~r~~c~C~~~d~~~~eAiq  328 (504)
T KOG0624|consen  263 YKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKN----------EPE----ETMIRYNGFRVLCTCYREDEQFGEAIQ  328 (504)
T ss_pred             HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhc----------CCc----ccceeeeeeheeeecccccCCHHHHHH
Confidence            345667777888999999999999999999999982          111    122233344556778888888888888


Q ss_pred             HHHHHHHcCCCchHHHHHHHHHhhh
Q 021445          286 DTEFAMRDGDDNVKALFRQGQVSII  310 (312)
Q Consensus       286 ~~~~al~l~p~~~Ka~~rrg~a~~~  310 (312)
                      .|+++|.++|+++.+|..||.||+.
T Consensus       329 qC~evL~~d~~dv~~l~dRAeA~l~  353 (504)
T KOG0624|consen  329 QCKEVLDIDPDDVQVLCDRAEAYLG  353 (504)
T ss_pred             HHHHHHhcCchHHHHHHHHHHHHhh
Confidence            8888888888888888888888864

>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]

Probab=97.71  E-value=2.1e-05  Score=75.70  Aligned_cols=100  Identities=15%  Similarity=0.087  Sum_probs=61.7

Q ss_pred             hhhhhHhhhhhHHhhhcHHHHHHHHHHHHHHhhhcc-----c--cCCCCchh---------hhHHHHHHHHHHhHHHHHH
Q 021445          211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICW-----E--KEGIDEGK---------SSSLRKTKSQIFTNSSACK  274 (312)
Q Consensus       211 ~~~~~k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~-----~--~~~~~~~~---------~~~~~~~~~~~~~N~a~~~  274 (312)
                      ..+.|...||-+--+++++.|+.+|.+|+++=....     .  .-...+|-         ...+++....+|.-++.+|
T Consensus       420 sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~rhYnAwYGlG~vy  499 (638)
T KOG1126|consen  420 SPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDPRHYNAWYGLGTVY  499 (638)
T ss_pred             CcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCchhhHHHHhhhhhe
Confidence            345689999999999999999999999998311000     0  00000000         0113444555666666666


Q ss_pred             HHcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHhhh
Q 021445          275 LKLGDLKGALLDTEFAMRDGDDNVKALFRQGQVSII  310 (312)
Q Consensus       275 ~kl~~~~~Ai~~~~~al~l~p~~~Ka~~rrg~a~~~  310 (312)
                      +|+++++.|.-++.+|++++|.|.-.+...|..+..
T Consensus       500 ~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~  535 (638)
T KOG1126|consen  500 LKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQ  535 (638)
T ss_pred             eccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHH
Confidence            666666666666666666666666666666655544

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF

Probab=97.71  E-value=0.00013  Score=55.68  Aligned_cols=74  Identities=12%  Similarity=0.131  Sum_probs=61.2

Q ss_pred             hhhHhhhhhHHhhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHcCCHHHHHHHHHHHHH
Q 021445          213 DSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMR  292 (312)
Q Consensus       213 ~~~k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~  292 (312)
                      ......|..+++.++|++|+..|.+++.....               .+....++.+++.++.+++++++|+..++++++
T Consensus        40 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~---------------~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~  104 (119)
T TIGR02795        40 NAHYWLGEAYYAQGKYADAAKAFLAVVKKYPK---------------SPKAPDALLKLGMSLQELGDKEKAKATLQQVIK  104 (119)
T ss_pred             HHHHHHHHHHHhhccHHHHHHHHHHHHHHCCC---------------CCcccHHHHHHHHHHHHhCChHHHHHHHHHHHH
Confidence            34667899999999999999999999983211               112345789999999999999999999999999


Q ss_pred             cCCCchHHH
Q 021445          293 DGDDNVKAL  301 (312)
Q Consensus       293 l~p~~~Ka~  301 (312)
                      ..|++..+.
T Consensus       105 ~~p~~~~~~  113 (119)
T TIGR02795       105 RYPGSSAAK  113 (119)
T ss_pred             HCcCChhHH
Confidence            999987643

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.

>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.70  E-value=5.4e-05  Score=70.68  Aligned_cols=101  Identities=16%  Similarity=0.170  Sum_probs=80.2

Q ss_pred             hhhhhHhhhhhHHhhhcHHHHHHHHHHHHHHhhhccc----------cCCCCc------hhhhHHHHHHHHHHhHHHHHH
Q 021445          211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWE----------KEGIDE------GKSSSLRKTKSQIFTNSSACK  274 (312)
Q Consensus       211 ~~~~~k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~----------~~~~~~------~~~~~~~~~~~~~~~N~a~~~  274 (312)
                      .+..+.-+|.-.|-.|++..|...+.++|.+-...+.          ..+.++      .....++|..+.+|..||+.+
T Consensus       325 ~A~al~~~gtF~fL~g~~~~a~~d~~~~I~l~~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~  404 (606)
T KOG0547|consen  325 MAEALLLRGTFHFLKGDSLGAQEDFDAAIKLDPAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMR  404 (606)
T ss_pred             HHHHHHHhhhhhhhcCCchhhhhhHHHHHhcCcccchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHH
Confidence            4777888999999999999999999999975322111          111111      223457788889999999999


Q ss_pred             HHcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHhhhh
Q 021445          275 LKLGDLKGALLDTEFAMRDGDDNVKALFRQGQVSIIL  311 (312)
Q Consensus       275 ~kl~~~~~Ai~~~~~al~l~p~~~Ka~~rrg~a~~~L  311 (312)
                      +-+++|++|+.|+++++.|+|+++-+|..++.+++.+
T Consensus       405 flL~q~e~A~aDF~Kai~L~pe~~~~~iQl~~a~Yr~  441 (606)
T KOG0547|consen  405 FLLQQYEEAIADFQKAISLDPENAYAYIQLCCALYRQ  441 (606)
T ss_pred             HHHHHHHHHHHHHHHHhhcChhhhHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999988764

>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]

Probab=97.70  E-value=0.00011  Score=68.61  Aligned_cols=76  Identities=18%  Similarity=0.114  Sum_probs=65.8

Q ss_pred             hhhhHHhhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHcCCHHHHHHHHHHHHHcCCCc
Q 021445          218 FGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDN  297 (312)
Q Consensus       218 ~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~l~p~~  297 (312)
                      .+.-+++.+++.+|++.+++++.                  +.|....+..|+|.+++++|++++|+...+..+.-+|++
T Consensus       346 ~~~i~~~~nk~~~A~e~~~kal~------------------l~P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~~p~d  407 (484)
T COG4783         346 AGDILLEANKAKEAIERLKKALA------------------LDPNSPLLQLNLAQALLKGGKPQEAIRILNRYLFNDPED  407 (484)
T ss_pred             HHHHHHHcCChHHHHHHHHHHHh------------------cCCCccHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCC
Confidence            34445567778888888888887                  667778899999999999999999999999999999999


Q ss_pred             hHHHHHHHHHhhhh
Q 021445          298 VKALFRQGQVSIIL  311 (312)
Q Consensus       298 ~Ka~~rrg~a~~~L  311 (312)
                      +..|...|+||..+
T Consensus       408 p~~w~~LAqay~~~  421 (484)
T COG4783         408 PNGWDLLAQAYAEL  421 (484)
T ss_pred             chHHHHHHHHHHHh
Confidence            99999999999654

>PF12688 TPR_5: Tetratrico peptide repeat

Probab=97.68  E-value=0.00044  Score=53.74  Aligned_cols=82  Identities=17%  Similarity=0.075  Sum_probs=66.5

Q ss_pred             hhHhhhhhHHhhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHcCCHHHHHHHHHHHHHc
Q 021445          214 SIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRD  293 (312)
Q Consensus       214 ~~k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~l  293 (312)
                      .+.+.|..+-..|+.++|+..|++|+..-        .       ..+....++.++|.++..+|++++|+...++++.-
T Consensus         3 ~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~g--------L-------~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~   67 (120)
T PF12688_consen    3 ALYELAWAHDSLGREEEAIPLYRRALAAG--------L-------SGADRRRALIQLASTLRNLGRYDEALALLEEALEE   67 (120)
T ss_pred             hHHHHHHHHHhcCCHHHHHHHHHHHHHcC--------C-------CchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            46678888899999999999999999831        0       13445668999999999999999999999999998


Q ss_pred             CCC---chHHHHHHHHHhhh
Q 021445          294 GDD---NVKALFRQGQVSII  310 (312)
Q Consensus       294 ~p~---~~Ka~~rrg~a~~~  310 (312)
                      .|+   +.....-.+.++..
T Consensus        68 ~p~~~~~~~l~~f~Al~L~~   87 (120)
T PF12688_consen   68 FPDDELNAALRVFLALALYN   87 (120)
T ss_pred             CCCccccHHHHHHHHHHHHH
Confidence            777   66666666666654

>PRK15174 Vi polysaccharide export protein VexE; Provisional

Probab=97.67  E-value=0.00014  Score=72.90  Aligned_cols=81  Identities=11%  Similarity=-0.020  Sum_probs=60.5

Q ss_pred             hhhhHhhhhhHHhhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHcCCHHHHHHHHHHHH
Q 021445          212 VDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAM  291 (312)
Q Consensus       212 ~~~~k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al  291 (312)
                      ...+...|......|++++|+..|++++.                  +.|....++.++|.++.++|++++|+..+++++
T Consensus        76 ~~~l~~l~~~~l~~g~~~~A~~~l~~~l~------------------~~P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al  137 (656)
T PRK15174         76 RDLLRRWVISPLASSQPDAVLQVVNKLLA------------------VNVCQPEDVLLVASVLLKSKQYATVADLAEQAW  137 (656)
T ss_pred             hhHHHHHhhhHhhcCCHHHHHHHHHHHHH------------------hCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            34456666677777788888888888777                  555566677778888888888888888888888


Q ss_pred             HcCCCchHHHHHHHHHhhh
Q 021445          292 RDGDDNVKALFRQGQVSII  310 (312)
Q Consensus       292 ~l~p~~~Ka~~rrg~a~~~  310 (312)
                      +++|.+..++..+|.++..
T Consensus       138 ~l~P~~~~a~~~la~~l~~  156 (656)
T PRK15174        138 LAFSGNSQIFALHLRTLVL  156 (656)
T ss_pred             HhCCCcHHHHHHHHHHHHH
Confidence            8888888888777777654

>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A

Probab=97.66  E-value=0.00023  Score=46.71  Aligned_cols=42  Identities=17%  Similarity=0.072  Sum_probs=35.3

Q ss_pred             HHhHHHHHHHHcCCHHHHHHHHHHHHHcCCCchHHHHHHHHH
Q 021445          266 IFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQV  307 (312)
Q Consensus       266 ~~~N~a~~~~kl~~~~~Ai~~~~~al~l~p~~~Ka~~rrg~a  307 (312)
                      ++..+|.+++|+|+|.+|.+.|+.+|+++|+|..|.--+..+
T Consensus         3 ~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~L~~~i   44 (53)
T PF14853_consen    3 CLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQSLKELI   44 (53)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHHHHHHH
T ss_pred             hHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHHHHHHH
Confidence            677899999999999999999999999999999887665544

>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=97.65  E-value=0.00017  Score=68.50  Aligned_cols=79  Identities=20%  Similarity=0.149  Sum_probs=68.4

Q ss_pred             hhhhHhhhhhHHhhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHcCCHHHHHHHHHHHH
Q 021445          212 VDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAM  291 (312)
Q Consensus       212 ~~~~k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al  291 (312)
                      ...+.+.|-.+.+.++|.+|+..|++||.                  +.|.....|...|.||..+|+++.|++++.+||
T Consensus       455 ~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~------------------l~~k~~~~~asig~iy~llgnld~Aid~fhKaL  516 (611)
T KOG1173|consen  455 EPTLNNLGHAYRKLNKYEEAIDYYQKALL------------------LSPKDASTHASIGYIYHLLGNLDKAIDHFHKAL  516 (611)
T ss_pred             hHHHHhHHHHHHHHhhHHHHHHHHHHHHH------------------cCCCchhHHHHHHHHHHHhcChHHHHHHHHHHH
Confidence            44577899999999999999999999999                  667788899999999999999999999999999


Q ss_pred             HcCCCchHHHHHHHHHh
Q 021445          292 RDGDDNVKALFRQGQVS  308 (312)
Q Consensus       292 ~l~p~~~Ka~~rrg~a~  308 (312)
                      -++|+|.-+---.+.|.
T Consensus       517 ~l~p~n~~~~~lL~~ai  533 (611)
T KOG1173|consen  517 ALKPDNIFISELLKLAI  533 (611)
T ss_pred             hcCCccHHHHHHHHHHH
Confidence            99999965444444443

>PRK11447 cellulose synthase subunit BcsC; Provisional

Probab=97.64  E-value=0.00015  Score=77.42  Aligned_cols=76  Identities=18%  Similarity=0.118  Sum_probs=67.9

Q ss_pred             HhhhhhHHhhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHcCCHHHHHHHHHHHHHcCC
Q 021445          216 KVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGD  295 (312)
Q Consensus       216 k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~l~p  295 (312)
                      ...|..+++.|++++|+..|+++++                  +.|....++.++|.++.++|++++|++.++++|+++|
T Consensus       355 ~~~g~~~~~~g~~~eA~~~~~~Al~------------------~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p  416 (1157)
T PRK11447        355 IQQGDAALKANNLAQAERLYQQARQ------------------VDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDP  416 (1157)
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHH------------------hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC
Confidence            4568889999999999999999999                  4555667899999999999999999999999999999


Q ss_pred             CchHHHHHHHHHhh
Q 021445          296 DNVKALFRQGQVSI  309 (312)
Q Consensus       296 ~~~Ka~~rrg~a~~  309 (312)
                      .+..++...+.+|.
T Consensus       417 ~~~~a~~~L~~l~~  430 (1157)
T PRK11447        417 GNTNAVRGLANLYR  430 (1157)
T ss_pred             CCHHHHHHHHHHHH
Confidence            99999888777653

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=97.64  E-value=0.0001  Score=50.35  Aligned_cols=44  Identities=20%  Similarity=0.244  Sum_probs=41.2

Q ss_pred             hHHHHHHHHcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHhhhh
Q 021445          268 TNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQVSIIL  311 (312)
Q Consensus       268 ~N~a~~~~kl~~~~~Ai~~~~~al~l~p~~~Ka~~rrg~a~~~L  311 (312)
                      +++|..+++.|+|++|+..++++++.+|.+..+++.+|.++..+
T Consensus         1 ~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~   44 (65)
T PF13432_consen    1 YALARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQ   44 (65)
T ss_dssp             HHHHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHT
T ss_pred             ChHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHc
Confidence            36899999999999999999999999999999999999999764

>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=97.61  E-value=0.00017  Score=68.43  Aligned_cols=86  Identities=17%  Similarity=0.189  Sum_probs=72.4

Q ss_pred             hHhhhhhHHhhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 021445          215 IKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDG  294 (312)
Q Consensus       215 ~k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~l~  294 (312)
                      +.+.|...|..+.|.+|+..|++++..+....      .+     .......++|+|.++-|+++|.+||..+.+||.+.
T Consensus       417 ~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~------~e-----~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~  485 (611)
T KOG1173|consen  417 LHELGVVAYTYEEYPEALKYFQKALEVIKSVL------NE-----KIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLS  485 (611)
T ss_pred             hhhhhheeehHhhhHHHHHHHHHHHHHhhhcc------cc-----ccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcC
Confidence            68899999999999999999999997544320      00     11345679999999999999999999999999999


Q ss_pred             CCchHHHHHHHHHhhhh
Q 021445          295 DDNVKALFRQGQVSIIL  311 (312)
Q Consensus       295 p~~~Ka~~rrg~a~~~L  311 (312)
                      |.++.++---|.+|..|
T Consensus       486 ~k~~~~~asig~iy~ll  502 (611)
T KOG1173|consen  486 PKDASTHASIGYIYHLL  502 (611)
T ss_pred             CCchhHHHHHHHHHHHh
Confidence            99999999888888654

>PRK11447 cellulose synthase subunit BcsC; Provisional

Probab=97.61  E-value=0.0002  Score=76.52  Aligned_cols=78  Identities=9%  Similarity=-0.013  Sum_probs=69.8

Q ss_pred             hhHhhhhhHHhhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHcCCHHHHHHHHHHHHHc
Q 021445          214 SIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRD  293 (312)
Q Consensus       214 ~~k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~l  293 (312)
                      .+..+|+.+...|++++|+..|+++++                  +.|....++.++|.+|.++|++++|+..+++++++
T Consensus       463 ~~~~~a~~~~~~g~~~eA~~~~~~Al~------------------~~P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~  524 (1157)
T PRK11447        463 RLAQQAEALENQGKWAQAAELQRQRLA------------------LDPGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQ  524 (1157)
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHH------------------hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence            456788999999999999999999999                  55666778999999999999999999999999999


Q ss_pred             CCCchHHHHHHHHHhh
Q 021445          294 GDDNVKALFRQGQVSI  309 (312)
Q Consensus       294 ~p~~~Ka~~rrg~a~~  309 (312)
                      +|.++.++|.+|..+.
T Consensus       525 ~P~~~~~~~a~al~l~  540 (1157)
T PRK11447        525 KPNDPEQVYAYGLYLS  540 (1157)
T ss_pred             CCCCHHHHHHHHHHHH
Confidence            9999999998876543

>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=97.61  E-value=0.0002  Score=66.56  Aligned_cols=102  Identities=21%  Similarity=0.213  Sum_probs=80.1

Q ss_pred             hhhhhHhhhhhHHhhhcHHHHHHHHHHHHHHhhhccc----------------cCCCCchhhhHHHHHHHHHHhHHHHHH
Q 021445          211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWE----------------KEGIDEGKSSSLRKTKSQIFTNSSACK  274 (312)
Q Consensus       211 ~~~~~k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~----------------~~~~~~~~~~~~~~~~~~~~~N~a~~~  274 (312)
                      ....|--.|-++..-++-..|++.|++|+++....-.                -.-.--....++.|....++.-+|.||
T Consensus       363 ~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY  442 (559)
T KOG1155|consen  363 YLSAWTLMGHEYVEMKNTHAAIESYRRAVDINPRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECY  442 (559)
T ss_pred             hhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHH
Confidence            4566788999999999999999999999986422000                000001223346777888999999999


Q ss_pred             HHcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHhhhhC
Q 021445          275 LKLGDLKGALLDTEFAMRDGDDNVKALFRQGQVSIILL  312 (312)
Q Consensus       275 ~kl~~~~~Ai~~~~~al~l~p~~~Ka~~rrg~a~~~L~  312 (312)
                      .|+++.++|+.++.+|+.....+..||++.|++|..|+
T Consensus       443 ~kl~~~~eAiKCykrai~~~dte~~~l~~LakLye~l~  480 (559)
T KOG1155|consen  443 EKLNRLEEAIKCYKRAILLGDTEGSALVRLAKLYEELK  480 (559)
T ss_pred             HHhccHHHHHHHHHHHHhccccchHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999998763

>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=97.60  E-value=9.1e-05  Score=68.24  Aligned_cols=147  Identities=24%  Similarity=0.284  Sum_probs=113.4

Q ss_pred             eeEEEEEEeCCCCchhHHhHHHHhhCCCCCCCCCCCCceecCCEEEEeecCCeEEeCCCCCCCCCCCC----cccC-CCC
Q 021445           17 EGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRVIKGFMIQGGDISAGDGTGGE----SIYG-LKF   91 (312)
Q Consensus        17 ~G~i~ieL~~~~aP~~~~nF~~l~~~~~~~~~~~~~~~~Y~g~~~~rv~~~~~iq~G~~~~~~~~~~~----~~~~-~~~   91 (312)
                      ..-|.|+|+.+-.|..++-|...|.-.           |+++..|.+|...+++|.||.......++-    +..+ ..|
T Consensus       111 ~s~IAVs~~~sg~i~VvD~~~d~~q~~-----------~fkklH~sPV~~i~y~qa~Ds~vSiD~~gmVEyWs~e~~~qf  179 (558)
T KOG0882|consen  111 ISLIAVSLFKSGKIFVVDGFGDFCQDG-----------YFKKLHFSPVKKIRYNQAGDSAVSIDISGMVEYWSAEGPFQF  179 (558)
T ss_pred             eeeEEeecccCCCcEEECCcCCcCccc-----------eecccccCceEEEEeeccccceeeccccceeEeecCCCcccC
Confidence            348999999999999999999999987           899999999999999999986533322221    1111 012


Q ss_pred             CC--CcccccCCCcceEEeecCCCCCCCceEEEecCCCCCCCCCCceEEEEEeChHHHHHHhcccCCCCCCcccceEEee
Q 021445           92 ED--ENFELKHERKGMLSMANAGPNTNGSQFFITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTITD  169 (312)
Q Consensus        92 ~~--e~~~~~~~~~G~l~~~~~~~~~~~sqF~I~~~~~~~ld~~~~vfG~V~~G~~vl~~i~~~~~~~~~~P~~~i~I~~  169 (312)
                      ++  .+..++|.. -+..+...-..-.+-+|+++....+.++.+..|+|+|..|-++++.|....++....|..++.|.+
T Consensus       180 Pr~~l~~~~K~eT-dLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGklvqeiDE~~t~~~~q~ks~y~l~~  258 (558)
T KOG0882|consen  180 PRTNLNFELKHET-DLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKLVQEIDEVLTDAQYQPKSPYGLMH  258 (558)
T ss_pred             ccccccccccccc-hhhcccccccCccceEEccccCcccccCcccEEEEEEeccchhhhhhhccchhhhhccccccccce
Confidence            22  234566643 444444443334467899998889999999999999999999999999999999999999999999


Q ss_pred             eeeeCC
Q 021445          170 CGEIPE  175 (312)
Q Consensus       170 ~g~l~~  175 (312)
                      ....++
T Consensus       259 VelgRR  264 (558)
T KOG0882|consen  259 VELGRR  264 (558)
T ss_pred             eehhhh
Confidence            887764

>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]

Probab=97.60  E-value=0.00011  Score=71.65  Aligned_cols=79  Identities=14%  Similarity=0.118  Sum_probs=71.5

Q ss_pred             hHhhhhhHHhhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 021445          215 IKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDG  294 (312)
Q Consensus       215 ~k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~l~  294 (312)
                      .+..|+-.+++++|++|.++++.+++                  ++|+....|.+++.|.+++++++.|.+++.+++.++
T Consensus       488 ~r~~~~~~~~~~~fs~~~~hle~sl~------------------~nplq~~~wf~~G~~ALqlek~q~av~aF~rcvtL~  549 (777)
T KOG1128|consen  488 QRSLALLILSNKDFSEADKHLERSLE------------------INPLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTLE  549 (777)
T ss_pred             HHhhccccccchhHHHHHHHHHHHhh------------------cCccchhHHHhccHHHHHHhhhHHHHHHHHHHhhcC
Confidence            34556666778999999999999998                  889999999999999999999999999999999999


Q ss_pred             CCchHHHHHHHHHhhhh
Q 021445          295 DDNVKALFRQGQVSIIL  311 (312)
Q Consensus       295 p~~~Ka~~rrg~a~~~L  311 (312)
                      |++..||-+.+.||..+
T Consensus       550 Pd~~eaWnNls~ayi~~  566 (777)
T KOG1128|consen  550 PDNAEAWNNLSTAYIRL  566 (777)
T ss_pred             CCchhhhhhhhHHHHHH
Confidence            99999999999999765

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=97.56  E-value=0.00038  Score=61.72  Aligned_cols=84  Identities=8%  Similarity=-0.021  Sum_probs=66.5

Q ss_pred             hhhHhhhhhH-HhhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHcCCHHHHHHHHHHHH
Q 021445          213 DSIKVFGNEH-YKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAM  291 (312)
Q Consensus       213 ~~~k~~Gn~~-~~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al  291 (312)
                      ....+.+-.+ ++.|+|++|+..|++.+.....               .+....++.-+|.+|+.+++|++|+..+.+++
T Consensus       143 ~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~---------------s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv  207 (263)
T PRK10803        143 NTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPD---------------STYQPNANYWLGQLNYNKGKKDDAAYYFASVV  207 (263)
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcC---------------CcchHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            4456677776 6679999999999999984211               12224578899999999999999999999999


Q ss_pred             HcCCC---chHHHHHHHHHhhhh
Q 021445          292 RDGDD---NVKALFRQGQVSIIL  311 (312)
Q Consensus       292 ~l~p~---~~Ka~~rrg~a~~~L  311 (312)
                      ...|+   ...|+++.|.++..+
T Consensus       208 ~~yP~s~~~~dAl~klg~~~~~~  230 (263)
T PRK10803        208 KNYPKSPKAADAMFKVGVIMQDK  230 (263)
T ss_pred             HHCCCCcchhHHHHHHHHHHHHc
Confidence            88876   567899999988654

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein

Probab=97.55  E-value=0.00025  Score=72.47  Aligned_cols=82  Identities=18%  Similarity=0.163  Sum_probs=72.9

Q ss_pred             hhhhhHhhhhhHHhhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHcCCHHHHHHHHHHH
Q 021445          211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA  290 (312)
Q Consensus       211 ~~~~~k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~a  290 (312)
                      .+..+...|+.++++|+|++|+..|.++++                  ..|....++..+|.+++++|+|++|+..+.++
T Consensus        21 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~------------------~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~   82 (899)
T TIGR02917        21 SPESLIEAAKSYLQKNKYKAAIIQLKNALQ------------------KDPNDAEARFLLGKIYLALGDYAAAEKELRKA   82 (899)
T ss_pred             CHHHHHHHHHHHHHcCChHhHHHHHHHHHH------------------hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            345678899999999999999999999999                  55667779999999999999999999999999


Q ss_pred             HHcCCCchHHHHHHHHHhhh
Q 021445          291 MRDGDDNVKALFRQGQVSII  310 (312)
Q Consensus       291 l~l~p~~~Ka~~rrg~a~~~  310 (312)
                      ++..|....+++..|.++..
T Consensus        83 ~~~~~~~~~~~~~~a~~~~~  102 (899)
T TIGR02917        83 LSLGYPKNQVLPLLARAYLL  102 (899)
T ss_pred             HHcCCChhhhHHHHHHHHHH
Confidence            99999988888888887764

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.

>PRK02603 photosystem I assembly protein Ycf3; Provisional

Probab=97.54  E-value=0.00042  Score=57.33  Aligned_cols=69  Identities=20%  Similarity=0.149  Sum_probs=59.8

Q ss_pred             hhhhHhhhhhHHhhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHcCC------------
Q 021445          212 VDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGD------------  279 (312)
Q Consensus       212 ~~~~k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~------------  279 (312)
                      +..+...|..+++.|+|++|+..|.+|+.                  +.|.....+.+++.++..+++            
T Consensus        72 ~~~~~~la~~~~~~g~~~~A~~~~~~al~------------------~~p~~~~~~~~lg~~~~~~g~~~~a~~~~~~A~  133 (172)
T PRK02603         72 SYILYNMGIIYASNGEHDKALEYYHQALE------------------LNPKQPSALNNIAVIYHKRGEKAEEAGDQDEAE  133 (172)
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHH------------------hCcccHHHHHHHHHHHHHcCChHhHhhCHHHHH
Confidence            34678899999999999999999999999                  445567788899999999887            


Q ss_pred             --HHHHHHHHHHHHHcCCCch
Q 021445          280 --LKGALLDTEFAMRDGDDNV  298 (312)
Q Consensus       280 --~~~Ai~~~~~al~l~p~~~  298 (312)
                        +++|++.+.+++.++|++.
T Consensus       134 ~~~~~A~~~~~~a~~~~p~~~  154 (172)
T PRK02603        134 ALFDKAAEYWKQAIRLAPNNY  154 (172)
T ss_pred             HHHHHHHHHHHHHHhhCchhH
Confidence              6889999999999999874

>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=97.52  E-value=0.00048  Score=58.75  Aligned_cols=81  Identities=19%  Similarity=0.069  Sum_probs=72.6

Q ss_pred             hhhhhhHhhhhhHHhhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHcCCHHHHHHHHHH
Q 021445          210 NAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEF  289 (312)
Q Consensus       210 ~~~~~~k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~  289 (312)
                      +.+....+.|-.++..|++..|..-.++||+                  .+|....+|.-||..|.++|+.+.|-+.+.+
T Consensus        33 ~aa~arlqLal~YL~~gd~~~A~~nlekAL~------------------~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~Yrk   94 (250)
T COG3063          33 EAAKARLQLALGYLQQGDYAQAKKNLEKALE------------------HDPSYYLAHLVRAHYYQKLGENDLADESYRK   94 (250)
T ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH------------------hCcccHHHHHHHHHHHHHcCChhhHHHHHHH
Confidence            4677788999999999999999999999999                  7888899999999999999999999999999


Q ss_pred             HHHcCCCchHHHHHHHHHh
Q 021445          290 AMRDGDDNVKALFRQGQVS  308 (312)
Q Consensus       290 al~l~p~~~Ka~~rrg~a~  308 (312)
                      ||.++|++...+-+-|.=+
T Consensus        95 Alsl~p~~GdVLNNYG~FL  113 (250)
T COG3063          95 ALSLAPNNGDVLNNYGAFL  113 (250)
T ss_pred             HHhcCCCccchhhhhhHHH
Confidence            9999999887776665433

>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]

Probab=97.50  E-value=0.00028  Score=70.24  Aligned_cols=85  Identities=19%  Similarity=0.175  Sum_probs=73.1

Q ss_pred             hhhhhhHhhhhhHHhhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHcCCHHHHHHHHHH
Q 021445          210 NAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEF  289 (312)
Q Consensus       210 ~~~~~~k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~  289 (312)
                      ..+.-+.+-+.++...|+|.+|+..|...+..-.                 -....+|.++|.||+.++.|++|++.+.+
T Consensus       412 d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~-----------------~~~~~vw~~~a~c~~~l~e~e~A~e~y~k  474 (895)
T KOG2076|consen  412 DDVDLYLDLADALTNIGKYKEALRLLSPITNREG-----------------YQNAFVWYKLARCYMELGEYEEAIEFYEK  474 (895)
T ss_pred             hhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCcc-----------------ccchhhhHHHHHHHHHHhhHHHHHHHHHH
Confidence            3556678999999999999999999999887211                 11266899999999999999999999999


Q ss_pred             HHHcCCCchHHHHHHHHHhhhh
Q 021445          290 AMRDGDDNVKALFRQGQVSIIL  311 (312)
Q Consensus       290 al~l~p~~~Ka~~rrg~a~~~L  311 (312)
                      ||.++|.+..+..+.+..+..+
T Consensus       475 vl~~~p~~~D~Ri~Lasl~~~~  496 (895)
T KOG2076|consen  475 VLILAPDNLDARITLASLYQQL  496 (895)
T ss_pred             HHhcCCCchhhhhhHHHHHHhc
Confidence            9999999999999999888654

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein

Probab=97.49  E-value=0.00031  Score=71.78  Aligned_cols=30  Identities=20%  Similarity=0.283  Sum_probs=26.0

Q ss_pred             hhhhhHhhhhhHHhhhcHHHHHHHHHHHHH
Q 021445          211 AVDSIKVFGNEHYKKQDYKMALRKYRKALR  240 (312)
Q Consensus       211 ~~~~~k~~Gn~~~~~~~y~~A~~~Y~kal~  240 (312)
                      .+..+...|..+++.|+|++|+..|.++++
T Consensus       124 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~  153 (899)
T TIGR02917       124 AAELLALRGLAYLGLGQLELAQKSYEQALA  153 (899)
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence            455677889999999999999999999987

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.

>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production

Probab=97.48  E-value=0.0018  Score=51.82  Aligned_cols=99  Identities=14%  Similarity=0.024  Sum_probs=74.9

Q ss_pred             hhhHhhhhhHHhhhcHHHHHHHHHHHHHHhhhccccC----CCCchhhhHHHHHHHHHHhHHHHHHHHcCCHHHHHHHHH
Q 021445          213 DSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKE----GIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTE  288 (312)
Q Consensus       213 ~~~k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~~~----~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~  288 (312)
                      +.+...|...-..++...++..|.+|+.+........    ..-......+......++..++..+...|++++|+..|.
T Consensus         7 ~~~~~~a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~~~~~~~~a~~~~~   86 (146)
T PF03704_consen    7 EALVREARAAARAGDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELYLDALERLAEALLEAGDYEEALRLLQ   86 (146)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHH
Confidence            3445567777788899999999999999876643322    222233455778888899999999999999999999999


Q ss_pred             HHHHcCCCchHHHHHHHHHhhhh
Q 021445          289 FAMRDGDDNVKALFRQGQVSIIL  311 (312)
Q Consensus       289 ~al~l~p~~~Ka~~rrg~a~~~L  311 (312)
                      +++.++|.+..+|...-++|..+
T Consensus        87 ~~l~~dP~~E~~~~~lm~~~~~~  109 (146)
T PF03704_consen   87 RALALDPYDEEAYRLLMRALAAQ  109 (146)
T ss_dssp             HHHHHSTT-HHHHHHHHHHHHHT
T ss_pred             HHHhcCCCCHHHHHHHHHHHHHC
Confidence            99999999999999988888653

It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.

>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]

Probab=97.48  E-value=0.00013  Score=61.57  Aligned_cols=81  Identities=12%  Similarity=0.064  Sum_probs=74.5

Q ss_pred             hhhhhHhhhhhHHhhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHcCCHHHHHHHHHHH
Q 021445          211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA  290 (312)
Q Consensus       211 ~~~~~k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~a  290 (312)
                      +|.-+.++|+-+=..|-+..|.-.|+++|.                  +.|....+++-++.-+..-|+|+.|.+.++.+
T Consensus        64 RA~l~fERGvlYDSlGL~~LAR~DftQaLa------------------i~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~  125 (297)
T COG4785          64 RAQLLFERGVLYDSLGLRALARNDFSQALA------------------IRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSV  125 (297)
T ss_pred             HHHHHHHhcchhhhhhHHHHHhhhhhhhhh------------------cCCCcHHHHHHHHHHHHhcccchHHHHHhhhH
Confidence            566678888888888899999999999999                  78888999999999999999999999999999


Q ss_pred             HHcCCCchHHHHHHHHHhh
Q 021445          291 MRDGDDNVKALFRQGQVSI  309 (312)
Q Consensus       291 l~l~p~~~Ka~~rrg~a~~  309 (312)
                      +++||.+--|..+||.+++
T Consensus       126 ~ELDp~y~Ya~lNRgi~~Y  144 (297)
T COG4785         126 LELDPTYNYAHLNRGIALY  144 (297)
T ss_pred             hccCCcchHHHhccceeee
Confidence            9999999999999998865

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Probab=97.47  E-value=0.0003  Score=49.91  Aligned_cols=66  Identities=27%  Similarity=0.332  Sum_probs=56.5

Q ss_pred             hhhHhhhhhHHhhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHcCCHHHHHHHHHHHHH
Q 021445          213 DSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMR  292 (312)
Q Consensus       213 ~~~k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~  292 (312)
                      ..+...|..++..+++++|+..|++++..                  .+....++.+++.++..++++++|+..+.++++
T Consensus        35 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~   96 (100)
T cd00189          35 DAYYNLAAAYYKLGKYEEALEDYEKALEL------------------DPDNAKAYYNLGLAYYKLGKYEEALEAYEKALE   96 (100)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhC------------------CCcchhHHHHHHHHHHHHHhHHHHHHHHHHHHc
Confidence            34677899999999999999999999983                  222336889999999999999999999999999


Q ss_pred             cCCC
Q 021445          293 DGDD  296 (312)
Q Consensus       293 l~p~  296 (312)
                      .+|.
T Consensus        97 ~~~~  100 (100)
T cd00189          97 LDPN  100 (100)
T ss_pred             cCCC
Confidence            8874

>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A

Probab=97.47  E-value=0.00021  Score=42.03  Aligned_cols=33  Identities=30%  Similarity=0.261  Sum_probs=30.2

Q ss_pred             HHHhHHHHHHHHcCCHHHHHHHHHHHHHcCCCc
Q 021445          265 QIFTNSSACKLKLGDLKGALLDTEFAMRDGDDN  297 (312)
Q Consensus       265 ~~~~N~a~~~~kl~~~~~Ai~~~~~al~l~p~~  297 (312)
                      .+|.++|.+|.++|++++|++.+.++++++|+|
T Consensus         2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~n   34 (34)
T PF13181_consen    2 EAYYNLGKIYEQLGDYEEALEYFEKALELNPDN   34 (34)
T ss_dssp             HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT-
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence            478999999999999999999999999999854

...

>PRK10049 pgaA outer membrane protein PgaA; Provisional

Probab=97.45  E-value=0.00047  Score=70.51  Aligned_cols=80  Identities=11%  Similarity=-0.039  Sum_probs=71.2

Q ss_pred             hhHhhhhhHHhhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHcCCHHHHHHHHHHHHHc
Q 021445          214 SIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRD  293 (312)
Q Consensus       214 ~~k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~l  293 (312)
                      .....|..+...|++++|+..+++++.                  ..|....++.++|.++.++|++++|+..+++++.+
T Consensus       361 a~~~~a~~l~~~g~~~eA~~~l~~al~------------------~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l  422 (765)
T PRK10049        361 GQSLLSQVAKYSNDLPQAEMRARELAY------------------NAPGNQGLRIDYASVLQARGWPRAAENELKKAEVL  422 (765)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHH------------------hCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Confidence            345678888899999999999999998                  45666779999999999999999999999999999


Q ss_pred             CCCchHHHHHHHHHhhhh
Q 021445          294 GDDNVKALFRQGQVSIIL  311 (312)
Q Consensus       294 ~p~~~Ka~~rrg~a~~~L  311 (312)
                      +|++..+++-+|.+++.+
T Consensus       423 ~Pd~~~l~~~~a~~al~~  440 (765)
T PRK10049        423 EPRNINLEVEQAWTALDL  440 (765)
T ss_pred             CCCChHHHHHHHHHHHHh
Confidence            999999999999887654

>PRK11788 tetratricopeptide repeat protein; Provisional

Probab=97.44  E-value=0.00098  Score=62.14  Aligned_cols=84  Identities=15%  Similarity=0.168  Sum_probs=55.6

Q ss_pred             hhHhhhhhHHhhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHcCCHHHHHHHHHHHHHc
Q 021445          214 SIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRD  293 (312)
Q Consensus       214 ~~k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~l  293 (312)
                      .+...+..+.+.|+|++|++.|.++++.-.       .+      .......++.+++.++++++++++|+..+++++++
T Consensus       143 ~~~~la~~~~~~g~~~~A~~~~~~~~~~~~-------~~------~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~  209 (389)
T PRK11788        143 ALQQLLEIYQQEKDWQKAIDVAERLEKLGG-------DS------LRVEIAHFYCELAQQALARGDLDAARALLKKALAA  209 (389)
T ss_pred             HHHHHHHHHHHhchHHHHHHHHHHHHHhcC-------Cc------chHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhH
Confidence            345566677777777777777777765210       00      01122345677777777778888888888887777


Q ss_pred             CCCchHHHHHHHHHhhh
Q 021445          294 GDDNVKALFRQGQVSII  310 (312)
Q Consensus       294 ~p~~~Ka~~rrg~a~~~  310 (312)
                      +|.+..+++.+|.++..
T Consensus       210 ~p~~~~~~~~la~~~~~  226 (389)
T PRK11788        210 DPQCVRASILLGDLALA  226 (389)
T ss_pred             CcCCHHHHHHHHHHHHH
Confidence            77777777777777654

>PRK10049 pgaA outer membrane protein PgaA; Provisional

Probab=97.40  E-value=0.00055  Score=70.05  Aligned_cols=76  Identities=13%  Similarity=0.138  Sum_probs=44.9

Q ss_pred             hhHhhhhhHHhhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHcCCHHHHHHHHHHHHHc
Q 021445          214 SIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRD  293 (312)
Q Consensus       214 ~~k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~l  293 (312)
                      .+...|..+.+.|++.+|+..|+++|+.                  .|....++.+++.++++++++++|+..+.++++.
T Consensus        51 ~~~~lA~~~~~~g~~~~A~~~~~~al~~------------------~P~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~  112 (765)
T PRK10049         51 GYAAVAVAYRNLKQWQNSLTLWQKALSL------------------EPQNDDYQRGLILTLADAGQYDEALVKAKQLVSG  112 (765)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHh------------------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence            3677888899999999999999999883                  2222333344444444444444444444444444


Q ss_pred             CCCchHHHHHHHHHh
Q 021445          294 GDDNVKALFRQGQVS  308 (312)
Q Consensus       294 ~p~~~Ka~~rrg~a~  308 (312)
                      +|+++. ++.+|.++
T Consensus       113 ~P~~~~-~~~la~~l  126 (765)
T PRK10049        113 APDKAN-LLALAYVY  126 (765)
T ss_pred             CCCCHH-HHHHHHHH
Confidence            444444 44444443

>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]

Probab=97.39  E-value=0.00044  Score=67.86  Aligned_cols=82  Identities=22%  Similarity=0.067  Sum_probs=73.7

Q ss_pred             hhhhHhhhhhHHhhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHcCCHHHHHH--HHHH
Q 021445          212 VDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALL--DTEF  289 (312)
Q Consensus       212 ~~~~k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~--~~~~  289 (312)
                      +..+...|..+-.+|++.+|.+.|..|+.                  ++|....+..-+|.|+++.|+..-|..  ....
T Consensus       684 ~~~~~~~G~~~~~~~~~~EA~~af~~Al~------------------ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~d  745 (799)
T KOG4162|consen  684 ASVYYLRGLLLEVKGQLEEAKEAFLVALA------------------LDPDHVPSMTALAELLLELGSPRLAEKRSLLSD  745 (799)
T ss_pred             HHHHHHhhHHHHHHHhhHHHHHHHHHHHh------------------cCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHH
Confidence            34468889999999999999999999999                  778888899999999999999888888  9999


Q ss_pred             HHHcCCCchHHHHHHHHHhhhh
Q 021445          290 AMRDGDDNVKALFRQGQVSIIL  311 (312)
Q Consensus       290 al~l~p~~~Ka~~rrg~a~~~L  311 (312)
                      ++++||.|.+|||..|..+..+
T Consensus       746 alr~dp~n~eaW~~LG~v~k~~  767 (799)
T KOG4162|consen  746 ALRLDPLNHEAWYYLGEVFKKL  767 (799)
T ss_pred             HHhhCCCCHHHHHHHHHHHHHc
Confidence            9999999999999999988653

>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=97.38  E-value=0.00059  Score=62.68  Aligned_cols=67  Identities=22%  Similarity=0.202  Sum_probs=59.3

Q ss_pred             HhhhhhHHhhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHcCCHHHHHHHHHHHHHcCC
Q 021445          216 KVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGD  295 (312)
Q Consensus       216 k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~l~p  295 (312)
                      .+.+-.+.|.++|.+|+..-+++|.                  +++....++.-|+.|++.+++|+.|+.++.+|++++|
T Consensus       261 lNlA~c~lKl~~~~~Ai~~c~kvLe------------------~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P  322 (397)
T KOG0543|consen  261 LNLAACYLKLKEYKEAIESCNKVLE------------------LDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEP  322 (397)
T ss_pred             hHHHHHHHhhhhHHHHHHHHHHHHh------------------cCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCC
Confidence            4556666788899999999999999                  6788899999999999999999999999999999999


Q ss_pred             CchHH
Q 021445          296 DNVKA  300 (312)
Q Consensus       296 ~~~Ka  300 (312)
                      .|--+
T Consensus       323 ~Nka~  327 (397)
T KOG0543|consen  323 SNKAA  327 (397)
T ss_pred             CcHHH
Confidence            99543

>PF13431 TPR_17: Tetratricopeptide repeat

Probab=97.38  E-value=8.7e-05  Score=44.04  Aligned_cols=34  Identities=26%  Similarity=0.461  Sum_probs=30.9

Q ss_pred             HHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHcCCHHHHHH
Q 021445          234 KYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALL  285 (312)
Q Consensus       234 ~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~  285 (312)
                      +|+|||+                  ++|....+|.|+|.+|...|++++|++
T Consensus         1 ~y~kAie------------------~~P~n~~a~~nla~~~~~~g~~~~A~~   34 (34)
T PF13431_consen    1 CYKKAIE------------------LNPNNAEAYNNLANLYLNQGDYEEAIA   34 (34)
T ss_pred             ChHHHHH------------------HCCCCHHHHHHHHHHHHHCcCHHhhcC
Confidence            4889999                  789999999999999999999999973

>PRK11788 tetratricopeptide repeat protein; Provisional

Probab=97.36  E-value=0.00073  Score=63.00  Aligned_cols=76  Identities=14%  Similarity=0.058  Sum_probs=45.9

Q ss_pred             hHhhhhhHHhhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 021445          215 IKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDG  294 (312)
Q Consensus       215 ~k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~l~  294 (312)
                      +...|..+++.+++++|+..|.++++.                  .|....++.++|.++.++|++++|++.+.+++..+
T Consensus       183 ~~~la~~~~~~~~~~~A~~~~~~al~~------------------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~  244 (389)
T PRK11788        183 YCELAQQALARGDLDAARALLKKALAA------------------DPQCVRASILLGDLALAQGDYAAAIEALERVEEQD  244 (389)
T ss_pred             HHHHHHHHHhCCCHHHHHHHHHHHHhH------------------CcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC
Confidence            456777778888999999999888873                  22223345555555555555555555555555555


Q ss_pred             CCch-HHHHHHHHHh
Q 021445          295 DDNV-KALFRQGQVS  308 (312)
Q Consensus       295 p~~~-Ka~~rrg~a~  308 (312)
                      |.+. .++...+.+|
T Consensus       245 p~~~~~~~~~l~~~~  259 (389)
T PRK11788        245 PEYLSEVLPKLMECY  259 (389)
T ss_pred             hhhHHHHHHHHHHHH
Confidence            5442 3334444444

>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function

Probab=97.35  E-value=0.0013  Score=52.71  Aligned_cols=84  Identities=18%  Similarity=0.104  Sum_probs=66.3

Q ss_pred             hhhhHhhhhhHHhhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHcCCHHHHHHHHHHHH
Q 021445          212 VDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAM  291 (312)
Q Consensus       212 ~~~~k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al  291 (312)
                      .......|..++..|+|++|+..|.+++..-               .-..+...+.+++|.+++.+++|++|+..++. +
T Consensus        48 ~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~---------------~d~~l~~~a~l~LA~~~~~~~~~d~Al~~L~~-~  111 (145)
T PF09976_consen   48 ALAALQLAKAAYEQGDYDEAKAALEKALANA---------------PDPELKPLARLRLARILLQQGQYDEALATLQQ-I  111 (145)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC---------------CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHh-c
Confidence            3445678999999999999999999999831               01244566889999999999999999999966 3


Q ss_pred             HcCCCchHHHHHHHHHhhhh
Q 021445          292 RDGDDNVKALFRQGQVSIIL  311 (312)
Q Consensus       292 ~l~p~~~Ka~~rrg~a~~~L  311 (312)
                      .-.+-.+.++..+|.+|..+
T Consensus       112 ~~~~~~~~~~~~~Gdi~~~~  131 (145)
T PF09976_consen  112 PDEAFKALAAELLGDIYLAQ  131 (145)
T ss_pred             cCcchHHHHHHHHHHHHHHC
Confidence            44455667888888888754

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO

Probab=97.29  E-value=0.0036  Score=54.22  Aligned_cols=90  Identities=19%  Similarity=0.150  Sum_probs=65.0

Q ss_pred             hHhhhhhHHhh--------hcHHHHHHHHHHHHHHhhhccccCCCCchhh------hHHHHHHHHHHhHHHHHHHHcCCH
Q 021445          215 IKVFGNEHYKK--------QDYKMALRKYRKALRYLDICWEKEGIDEGKS------SSLRKTKSQIFTNSSACKLKLGDL  280 (312)
Q Consensus       215 ~k~~Gn~~~~~--------~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~------~~~~~~~~~~~~N~a~~~~kl~~~  280 (312)
                      +...|..+++.        +++++|+..|++++..-.       .+....      ............++|.+|+++|++
T Consensus       110 ~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p-------~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g~~  182 (235)
T TIGR03302       110 YYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYP-------NSEYAPDAKKRMDYLRNRLAGKELYVARFYLKRGAY  182 (235)
T ss_pred             HHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCC-------CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCh
Confidence            45566666654        889999999999997421       111110      111222233456899999999999


Q ss_pred             HHHHHHHHHHHHcCCC---chHHHHHHHHHhhhh
Q 021445          281 KGALLDTEFAMRDGDD---NVKALFRQGQVSIIL  311 (312)
Q Consensus       281 ~~Ai~~~~~al~l~p~---~~Ka~~rrg~a~~~L  311 (312)
                      .+|+..+.+++...|+   .+++++++|.++..+
T Consensus       183 ~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~l  216 (235)
T TIGR03302       183 VAAINRFETVVENYPDTPATEEALARLVEAYLKL  216 (235)
T ss_pred             HHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHc
Confidence            9999999999999665   569999999999875

Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).

>KOG1840 consensus Kinesin light chain [Cytoskeleton]

Probab=97.25  E-value=0.00076  Score=64.91  Aligned_cols=73  Identities=15%  Similarity=0.068  Sum_probs=61.4

Q ss_pred             hhhhHhhhhhHHhhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHcCCHHHHHHHHHHHH
Q 021445          212 VDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAM  291 (312)
Q Consensus       212 ~~~~k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al  291 (312)
                      +..++.-|+.+...++|.+|+..|.+||..+...          .....|.....+.|+|..|.+.|+|.+|..+|++|+
T Consensus       241 a~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~----------~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al  310 (508)
T KOG1840|consen  241 ASMLNILALVYRSLGKYDEAVNLYEEALTIREEV----------FGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERAL  310 (508)
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHh----------cCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHH
Confidence            4445678999999999999999999999976542          112457788899999999999999999999999999


Q ss_pred             HcC
Q 021445          292 RDG  294 (312)
Q Consensus       292 ~l~  294 (312)
                      ++-
T Consensus       311 ~I~  313 (508)
T KOG1840|consen  311 EIY  313 (508)
T ss_pred             HHH
Confidence            653

>COG4105 ComL DNA uptake lipoprotein [General function prediction only]

Probab=97.24  E-value=0.0013  Score=57.17  Aligned_cols=85  Identities=14%  Similarity=0.097  Sum_probs=70.7

Q ss_pred             hhhhhHhhhhhHHhhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHcCCHHHHHHHHHHH
Q 021445          211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA  290 (312)
Q Consensus       211 ~~~~~k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~a  290 (312)
                      -+..|.++|....+.|+|.+|+..|.+...-       .+        ..|....+.+.++.+++|-++|++|+...++-
T Consensus        33 p~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~-------~p--------~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drF   97 (254)
T COG4105          33 PASELYNEGLTELQKGNYEEAIKYFEALDSR-------HP--------FSPYSEQAQLDLAYAYYKNGEYDLALAYIDRF   97 (254)
T ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-------CC--------CCcccHHHHHHHHHHHHhcccHHHHHHHHHHH
Confidence            4667999999999999999999999888762       11        23444567788999999999999999999999


Q ss_pred             HHcCCCchH---HHHHHHHHhhh
Q 021445          291 MRDGDDNVK---ALFRQGQVSII  310 (312)
Q Consensus       291 l~l~p~~~K---a~~rrg~a~~~  310 (312)
                      +++.|++..   ++|-+|.++..
T Consensus        98 i~lyP~~~n~dY~~YlkgLs~~~  120 (254)
T COG4105          98 IRLYPTHPNADYAYYLKGLSYFF  120 (254)
T ss_pred             HHhCCCCCChhHHHHHHHHHHhc
Confidence            999998775   78888887653

>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins

Probab=97.23  E-value=0.0012  Score=54.36  Aligned_cols=66  Identities=21%  Similarity=0.231  Sum_probs=53.8

Q ss_pred             HHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHcCC----------HHHHHHHHHHHHHcCCCc
Q 021445          228 YKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGD----------LKGALLDTEFAMRDGDDN  297 (312)
Q Consensus       228 y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~----------~~~Ai~~~~~al~l~p~~  297 (312)
                      |+.|.+.|..+..                  .+|.....+.|-+.+++.|-+          +++|+.-+++||.++|+.
T Consensus         7 FE~ark~aea~y~------------------~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~   68 (186)
T PF06552_consen    7 FEHARKKAEAAYA------------------KNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNK   68 (186)
T ss_dssp             HHHHHHHHHHHHH------------------H-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-
T ss_pred             HHHHHHHHHHHHH------------------hCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCch
Confidence            6778888888887                  778888899999999988743          578899999999999999


Q ss_pred             hHHHHHHHHHhhhh
Q 021445          298 VKALFRQGQVSIIL  311 (312)
Q Consensus       298 ~Ka~~rrg~a~~~L  311 (312)
                      ..|++..|.||..+
T Consensus        69 hdAlw~lGnA~ts~   82 (186)
T PF06552_consen   69 HDALWCLGNAYTSL   82 (186)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH
Confidence            99999999999764

Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.

>KOG2003 consensus TPR repeat-containing protein [General function prediction only]

Probab=97.19  E-value=0.00019  Score=66.50  Aligned_cols=80  Identities=20%  Similarity=0.304  Sum_probs=66.7

Q ss_pred             HhhhhhHHhhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHcCCHHHHHHHHHHHHHcCC
Q 021445          216 KVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGD  295 (312)
Q Consensus       216 k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~l~p  295 (312)
                      .+.||.+|++.+|.+|+..|+-||..+...             -+...+.++.|.+.++.++|+|+.||..++.+.+..|
T Consensus       241 mnigni~~kkr~fskaikfyrmaldqvpsi-------------nk~~rikil~nigvtfiq~gqy~dainsfdh~m~~~p  307 (840)
T KOG2003|consen  241 MNIGNIHFKKREFSKAIKFYRMALDQVPSI-------------NKDMRIKILNNIGVTFIQAGQYDDAINSFDHCMEEAP  307 (840)
T ss_pred             eeecceeeehhhHHHHHHHHHHHHhhcccc-------------chhhHHHHHhhcCeeEEecccchhhHhhHHHHHHhCc
Confidence            478999999999999999999999865442             3567888999999999999999999999999999998


Q ss_pred             CchHHHHHHHHHhh
Q 021445          296 DNVKALFRQGQVSI  309 (312)
Q Consensus       296 ~~~Ka~~rrg~a~~  309 (312)
                      +. ++-+..-.|+.
T Consensus       308 n~-~a~~nl~i~~f  320 (840)
T KOG2003|consen  308 NF-IAALNLIICAF  320 (840)
T ss_pred             cH-Hhhhhhhhhhe
Confidence            55 45455554443

>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H

Probab=97.18  E-value=0.00078  Score=47.74  Aligned_cols=51  Identities=22%  Similarity=0.175  Sum_probs=41.7

Q ss_pred             HHHHHHHhHHHHHHHHcCCHHHHHHHHHHHHHcC-------CCchHHHHHHHHHhhhh
Q 021445          261 KTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDG-------DDNVKALFRQGQVSIIL  311 (312)
Q Consensus       261 ~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~l~-------p~~~Ka~~rrg~a~~~L  311 (312)
                      |....+|.|+|.+|..+|+|++|+..+++|+++.       |.-+.+++..|.++..+
T Consensus         2 ~~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~   59 (78)
T PF13424_consen    2 PDTANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRL   59 (78)
T ss_dssp             HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHc
Confidence            4567899999999999999999999999999552       23467889999988765

...

>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]

Probab=97.17  E-value=0.0021  Score=57.97  Aligned_cols=67  Identities=16%  Similarity=0.132  Sum_probs=62.9

Q ss_pred             hHhhhhhHHhhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 021445          215 IKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDG  294 (312)
Q Consensus       215 ~k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~l~  294 (312)
                      ..+++-++++.++|..|....+.||.                  ++..+..+|+.|+.+...||+..+|-+||+.||+|.
T Consensus       134 ~~NRA~AYlk~K~FA~AE~DC~~Aia------------------Ld~~Y~KAYSRR~~AR~~Lg~~~EAKkD~E~vL~LE  195 (536)
T KOG4648|consen  134 HINRALAYLKQKSFAQAEEDCEAAIA------------------LDKLYVKAYSRRMQARESLGNNMEAKKDCETVLALE  195 (536)
T ss_pred             hhhHHHHHHHHHHHHHHHHhHHHHHH------------------hhHHHHHHHHHHHHHHHHHhhHHHHHHhHHHHHhhC
Confidence            56888999999999999999999999                  889999999999999999999999999999999999


Q ss_pred             CCchH
Q 021445          295 DDNVK  299 (312)
Q Consensus       295 p~~~K  299 (312)
                      |++..
T Consensus       196 P~~~E  200 (536)
T KOG4648|consen  196 PKNIE  200 (536)
T ss_pred             cccHH
Confidence            98653

>PF13371 TPR_9: Tetratricopeptide repeat

Probab=97.14  E-value=0.00079  Score=46.97  Aligned_cols=41  Identities=20%  Similarity=0.149  Sum_probs=38.5

Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHhhhh
Q 021445          271 SACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQVSIIL  311 (312)
Q Consensus       271 a~~~~kl~~~~~Ai~~~~~al~l~p~~~Ka~~rrg~a~~~L  311 (312)
                      ...|++.++|++|++.+++++.++|.++.+|+.+|.++..+
T Consensus         2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~   42 (73)
T PF13371_consen    2 KQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQL   42 (73)
T ss_pred             HHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHh
Confidence            56789999999999999999999999999999999999865

>CHL00033 ycf3 photosystem I assembly protein Ycf3

Probab=97.13  E-value=0.0016  Score=53.57  Aligned_cols=76  Identities=17%  Similarity=0.024  Sum_probs=51.3

Q ss_pred             hhhhHhhhhhHHhhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHcCCHHHHHHHHH---
Q 021445          212 VDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTE---  288 (312)
Q Consensus       212 ~~~~k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~---  288 (312)
                      +..+.+.|..+...|++++|+..|.+|+..-..       .    .........+|.|++..+.++|++++|+.+++   
T Consensus        72 ~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~-------~----~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~a~  140 (168)
T CHL00033         72 SYILYNIGLIHTSNGEHTKALEYYFQALERNPF-------L----PQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQAA  140 (168)
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-------c----HHHHHHHHHHHHHhhHHHHHcccHHHHHHHHHHHH
Confidence            346788999999999999999999999983110       0    11122334455555555558999885555554   


Q ss_pred             ----HHHHcCCCch
Q 021445          289 ----FAMRDGDDNV  298 (312)
Q Consensus       289 ----~al~l~p~~~  298 (312)
                          +++..+|.+.
T Consensus       141 ~~~~~a~~~~p~~~  154 (168)
T CHL00033        141 EYWKQAIALAPGNY  154 (168)
T ss_pred             HHHHHHHHhCcccH
Confidence                5667888655

>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A

Probab=97.11  E-value=0.0044  Score=55.61  Aligned_cols=89  Identities=15%  Similarity=0.162  Sum_probs=63.7

Q ss_pred             hhhhhHhhhhhHHhh-hcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHcCCHHHHHHHHHH
Q 021445          211 AVDSIKVFGNEHYKK-QDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEF  289 (312)
Q Consensus       211 ~~~~~k~~Gn~~~~~-~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~  289 (312)
                      .+..+.+.|..+-+. +++++|++.|++|++++...            ........++.+.|.++.++++|++|++.+++
T Consensus       113 aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e------------~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~  180 (282)
T PF14938_consen  113 AAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQE------------GSPHSAAECLLKAADLYARLGRYEEAIEIYEE  180 (282)
T ss_dssp             HHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHT------------T-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHC------------CChhhHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence            455567777777787 89999999999999987552            02344567899999999999999999999999


Q ss_pred             HHHcCC------CchHHH-HHHHHHhhhh
Q 021445          290 AMRDGD------DNVKAL-FRQGQVSIIL  311 (312)
Q Consensus       290 al~l~p------~~~Ka~-~rrg~a~~~L  311 (312)
                      +....-      .++|-+ ++.+.|++.+
T Consensus       181 ~~~~~l~~~l~~~~~~~~~l~a~l~~L~~  209 (282)
T PF14938_consen  181 VAKKCLENNLLKYSAKEYFLKAILCHLAM  209 (282)
T ss_dssp             HHHTCCCHCTTGHHHHHHHHHHHHHHHHT
T ss_pred             HHHHhhcccccchhHHHHHHHHHHHHHHc
Confidence            986421      145544 4556666543

>KOG1125 consensus TPR repeat-containing protein [General function prediction only]

Probab=97.08  E-value=0.0023  Score=61.09  Aligned_cols=76  Identities=12%  Similarity=0.079  Sum_probs=72.5

Q ss_pred             HhhhhhHHhhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHcCCHHHHHHHHHHHHHcCC
Q 021445          216 KVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGD  295 (312)
Q Consensus       216 k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~l~p  295 (312)
                      ..+|..++++|+.-+|+-.|+.|+.                  -+|..+.+|.-++.++...++-..||....++|++||
T Consensus       289 f~eG~~lm~nG~L~~A~LafEAAVk------------------qdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP  350 (579)
T KOG1125|consen  289 FKEGCNLMKNGDLSEAALAFEAAVK------------------QDPQHAEAWQKLGITQAENENEQNAISALRRCLELDP  350 (579)
T ss_pred             HHHHHHHHhcCCchHHHHHHHHHHh------------------hChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCC
Confidence            5789999999999999999999999                  7888999999999999999999999999999999999


Q ss_pred             CchHHHHHHHHHhh
Q 021445          296 DNVKALFRQGQVSI  309 (312)
Q Consensus       296 ~~~Ka~~rrg~a~~  309 (312)
                      +|.+|+.-.|..|.
T Consensus       351 ~NleaLmaLAVSyt  364 (579)
T KOG1125|consen  351 TNLEALMALAVSYT  364 (579)
T ss_pred             ccHHHHHHHHHHHh
Confidence            99999999998885

>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi

Probab=97.05  E-value=0.0022  Score=60.03  Aligned_cols=76  Identities=14%  Similarity=0.076  Sum_probs=62.4

Q ss_pred             hhhHHhhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHcCCHHHHHHHHHHHHHcCCCch
Q 021445          219 GNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNV  298 (312)
Q Consensus       219 Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~l~p~~~  298 (312)
                      +..++..++-.+|++...++|.                  ..|....++.-.|..+++.++|+.|+..+.+|.++.|...
T Consensus       207 A~v~l~~~~E~~AI~ll~~aL~------------------~~p~d~~LL~~Qa~fLl~k~~~~lAL~iAk~av~lsP~~f  268 (395)
T PF09295_consen  207 ARVYLLMNEEVEAIRLLNEALK------------------ENPQDSELLNLQAEFLLSKKKYELALEIAKKAVELSPSEF  268 (395)
T ss_pred             HHHHHhcCcHHHHHHHHHHHHH------------------hCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhH
Confidence            3444445566778888888886                  3344477888899999999999999999999999999999


Q ss_pred             HHHHHHHHHhhhhC
Q 021445          299 KALFRQGQVSIILL  312 (312)
Q Consensus       299 Ka~~rrg~a~~~L~  312 (312)
                      ++|+..|++|..+.
T Consensus       269 ~~W~~La~~Yi~~~  282 (395)
T PF09295_consen  269 ETWYQLAECYIQLG  282 (395)
T ss_pred             HHHHHHHHHHHhcC
Confidence            99999999998763

They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].

>PRK15331 chaperone protein SicA; Provisional

Probab=97.05  E-value=0.0019  Score=52.50  Aligned_cols=76  Identities=14%  Similarity=0.087  Sum_probs=60.6

Q ss_pred             hHhhhhhHHhhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 021445          215 IKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDG  294 (312)
Q Consensus       215 ~k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~l~  294 (312)
                      +...|-.+-..++|++|+..|..|..+                  .+.....+...|.||+.+++..+|..++..|+. .
T Consensus        74 ~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l------------------~~~dp~p~f~agqC~l~l~~~~~A~~~f~~a~~-~  134 (165)
T PRK15331         74 TMGLAAVCQLKKQFQKACDLYAVAFTL------------------LKNDYRPVFFTGQCQLLMRKAAKARQCFELVNE-R  134 (165)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHc------------------ccCCCCccchHHHHHHHhCCHHHHHHHHHHHHh-C
Confidence            566777777889999999999999873                  333344578899999999999999999999999 4


Q ss_pred             CCchHHHHHHHHHhhh
Q 021445          295 DDNVKALFRQGQVSII  310 (312)
Q Consensus       295 p~~~Ka~~rrg~a~~~  310 (312)
                      |. -..+.+||++++.
T Consensus       135 ~~-~~~l~~~A~~~L~  149 (165)
T PRK15331        135 TE-DESLRAKALVYLE  149 (165)
T ss_pred             cc-hHHHHHHHHHHHH
Confidence            54 4467777887764

>smart00028 TPR Tetratricopeptide repeats

Probab=97.00  E-value=0.0014  Score=36.70  Aligned_cols=33  Identities=33%  Similarity=0.301  Sum_probs=30.1

Q ss_pred             HHHhHHHHHHHHcCCHHHHHHHHHHHHHcCCCc
Q 021445          265 QIFTNSSACKLKLGDLKGALLDTEFAMRDGDDN  297 (312)
Q Consensus       265 ~~~~N~a~~~~kl~~~~~Ai~~~~~al~l~p~~  297 (312)
                      .++.++|.|+..++++++|+..+.++++++|.+
T Consensus         2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~~   34 (34)
T smart00028        2 EALYNLGNAYLKLGDYDEALEYYEKALELDPNN   34 (34)
T ss_pred             hHHHHHHHHHHHHhhHHHHHHHHHHHHccCCCC
Confidence            368899999999999999999999999998863

Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.

>KOG3060 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.97  E-value=0.0033  Score=54.43  Aligned_cols=79  Identities=16%  Similarity=0.122  Sum_probs=67.2

Q ss_pred             hhhhhHhhhhhHHhhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHcC---CHHHHHHHH
Q 021445          211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLG---DLKGALLDT  287 (312)
Q Consensus       211 ~~~~~k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~---~~~~Ai~~~  287 (312)
                      ..+.|.+.++-++..++|+.|+-||.+.+-                  +.|..+.++.-+|.+++-+|   ++.-|.+++
T Consensus       153 D~EAW~eLaeiY~~~~~f~kA~fClEE~ll------------------~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy  214 (289)
T KOG3060|consen  153 DQEAWHELAEIYLSEGDFEKAAFCLEELLL------------------IQPFNPLYFQRLAEVLYTQGGAENLELARKYY  214 (289)
T ss_pred             cHHHHHHHHHHHHhHhHHHHHHHHHHHHHH------------------cCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence            456688889999999999999999999987                  67788888888999888877   688899999


Q ss_pred             HHHHHcCCCchHHHHHHHHH
Q 021445          288 EFAMRDGDDNVKALFRQGQV  307 (312)
Q Consensus       288 ~~al~l~p~~~Ka~~rrg~a  307 (312)
                      .++|+++|.+..+||---.|
T Consensus       215 ~~alkl~~~~~ral~GI~lc  234 (289)
T KOG3060|consen  215 ERALKLNPKNLRALFGIYLC  234 (289)
T ss_pred             HHHHHhChHhHHHHHHHHHH
Confidence            99999999998888765443

>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B

Probab=96.95  E-value=0.0016  Score=58.16  Aligned_cols=99  Identities=20%  Similarity=0.085  Sum_probs=70.3

Q ss_pred             hhhHhhhhhHHhhhcHHHHHHHHHHHHHHhhhccc---------cCCCCchhh-------hHHHHHHHHHHhHHHHHHHH
Q 021445          213 DSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWE---------KEGIDEGKS-------SSLRKTKSQIFTNSSACKLK  276 (312)
Q Consensus       213 ~~~k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~---------~~~~~~~~~-------~~~~~~~~~~~~N~a~~~~k  276 (312)
                      .-+...|..+.+.|++++|++.|++||+.-...+.         .+....++.       ....+....++..+|.++++
T Consensus       147 ~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~  226 (280)
T PF13429_consen  147 RFWLALAEIYEQLGDPDKALRDYRKALELDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQ  226 (280)
T ss_dssp             HHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhcc
Confidence            34567888888999999999999999985432110         111111110       01123345678899999999


Q ss_pred             cCCHHHHHHHHHHHHHcCCCchHHHHHHHHHhhhh
Q 021445          277 LGDLKGALLDTEFAMRDGDDNVKALFRQGQVSIIL  311 (312)
Q Consensus       277 l~~~~~Ai~~~~~al~l~p~~~Ka~~rrg~a~~~L  311 (312)
                      +|++++|+..+.++++.+|+++..+...|.++...
T Consensus       227 lg~~~~Al~~~~~~~~~~p~d~~~~~~~a~~l~~~  261 (280)
T PF13429_consen  227 LGRYEEALEYLEKALKLNPDDPLWLLAYADALEQA  261 (280)
T ss_dssp             HT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHT--
T ss_pred             ccccccccccccccccccccccccccccccccccc
Confidence            99999999999999999999999999999998653

>PRK00969 hypothetical protein; Provisional

Probab=96.92  E-value=0.0037  Score=59.05  Aligned_cols=101  Identities=28%  Similarity=0.436  Sum_probs=68.1

Q ss_pred             eEEEEEEeCCCCchhHHhHHHHhhCCCCCCCCCCCCceecCCEEEEee--cCCeEEeCCCCCCCCCCCCcccCCCCCCCc
Q 021445           18 GRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRVI--KGFMIQGGDISAGDGTGGESIYGLKFEDEN   95 (312)
Q Consensus        18 G~i~ieL~~~~aP~~~~nF~~l~~~~~~~~~~~~~~~~Y~g~~~~rv~--~~~~iq~G~~~~~~~~~~~~~~~~~~~~e~   95 (312)
                      =.+.++|.++ +|.++++|+.+.+.+.                 ++|-  .+-+|.           ..+.-|...+.|+
T Consensus       204 Ty~eve~~~~-~p~s~EH~la~~~~G~-----------------f~Vd~~tstfI~-----------d~~L~g~~~p~En  254 (508)
T PRK00969        204 TYVEVELDPG-APKSVEHFLALLEDGT-----------------FEVDFETSTFIA-----------DDRLQGLKIPEEN  254 (508)
T ss_pred             EEEEEEEcCC-CCchHHHHHHHHhCCe-----------------EEEeeeecceEe-----------eccccCccCCccc
Confidence            4677888877 8999999999999872                 2221  111111           1223345556666


Q ss_pred             ccccCCCcceEEeecCCCCCCCceEEEecCCCCCCCCCCceEEEEEeChHHHHHHhc
Q 021445           96 FELKHERKGMLSMANAGPNTNGSQFFITTTRTSHLDGKHVVFGRVIKGMGVVRSIEH  152 (312)
Q Consensus        96 ~~~~~~~~G~l~~~~~~~~~~~sqF~I~~~~~~~ld~~~~vfG~V~~G~~vl~~i~~  152 (312)
                      ..-  -++|+|++.+.|..  ....||.-.+.+. .-.|+|+|+|+.||++++--..
T Consensus       255 ~~~--R~~GtVTVRt~G~g--~G~vYIyredr~s-s~sHtvVG~V~~GiELi~~a~~  306 (508)
T PRK00969        255 FEP--RRRGTVTVRTAGVG--VGKVYIYREDRPS-SLSHTVVGRVTHGIELIDFAKE  306 (508)
T ss_pred             cCc--cccceEEEEeeccC--ceeEEEECCCCCC-CccceeEEEEecceeeeecccC
Confidence            432  35799999998843  4578888776543 3458999999999999876544

>TIGR03268 methan_mark_3 putative methanogenesis marker protein 3

Probab=96.92  E-value=0.0041  Score=58.58  Aligned_cols=101  Identities=26%  Similarity=0.425  Sum_probs=67.8

Q ss_pred             eEEEEEEeCCCCchhHHhHHHHhhCCCCCCCCCCCCceecCCEEEEee--cCCeEEeCCCCCCCCCCCCcccCCCCCCCc
Q 021445           18 GRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRVI--KGFMIQGGDISAGDGTGGESIYGLKFEDEN   95 (312)
Q Consensus        18 G~i~ieL~~~~aP~~~~nF~~l~~~~~~~~~~~~~~~~Y~g~~~~rv~--~~~~iq~G~~~~~~~~~~~~~~~~~~~~e~   95 (312)
                      =.+.+||.++ +|.++++|+.+.+.+.                 ++|-  .+-+|.           ..+.-|...+.|+
T Consensus       201 Ty~evE~~~~-~p~s~EH~la~~~~G~-----------------~~Vd~~tsTfi~-----------d~~L~g~~~p~En  251 (503)
T TIGR03268       201 TYVEVELDPN-APVSVEHFLALMEDGT-----------------FRVDYRTSTFIS-----------DDSLRGLDKPEEN  251 (503)
T ss_pred             EEEEEEEcCC-CChhHHHHHHHHhCCe-----------------EEEeeeecceEe-----------cccccCccCCccc
Confidence            4678888777 8999999999988872                 2221  111111           1223344556665


Q ss_pred             ccccCCCcceEEeecCCCCCCCceEEEecCCCCCCCCCCceEEEEEeChHHHHHHhc
Q 021445           96 FELKHERKGMLSMANAGPNTNGSQFFITTTRTSHLDGKHVVFGRVIKGMGVVRSIEH  152 (312)
Q Consensus        96 ~~~~~~~~G~l~~~~~~~~~~~sqF~I~~~~~~~ld~~~~vfG~V~~G~~vl~~i~~  152 (312)
                      ..  .-++|+|++.+.|..  ....||--.+.+. .-.|+|+|+|+.||++++--+.
T Consensus       252 ~~--~R~rGtVTVRn~G~G--~G~VYIYredr~s-s~sHtvVG~V~~GiELid~a~~  303 (503)
T TIGR03268       252 IE--KRRRGAVTVRNSGVG--EGRVYIYREDRPS-SLSHNVVGHVTRGIELIDIAQE  303 (503)
T ss_pred             cC--cccceeEEEEeeccC--ceeEEEEcCCCCC-CcccceeEEEecceeeeecccC
Confidence            43  235799999998843  4568888776543 3458999999999999876544

A single member of this protein family is found in each of the first ten complete genome sequences of archaeal methanogens, and nowhere else. This protein family was detected by the method of partial phylogenetic profiling (see Haft, et al., 2006). The functions of proteins in this family are unknown, but their role is likely one essential to methanogenesis.

>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins

Probab=96.91  E-value=0.0044  Score=51.07  Aligned_cols=75  Identities=17%  Similarity=0.224  Sum_probs=53.9

Q ss_pred             hhhhHhhhhhHHhh----------hcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHcCC--
Q 021445          212 VDSIKVFGNEHYKK----------QDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGD--  279 (312)
Q Consensus       212 ~~~~k~~Gn~~~~~----------~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~--  279 (312)
                      ++.|..-|..|...          .-+++|+.+|++||.                  ++|.+..++.|++.+|..++.  
T Consensus        25 adnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~------------------I~P~~hdAlw~lGnA~ts~A~l~   86 (186)
T PF06552_consen   25 ADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALK------------------INPNKHDALWCLGNAYTSLAFLT   86 (186)
T ss_dssp             HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHH------------------H-TT-HHHHHHHHHHHHHHHHH-
T ss_pred             HHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHh------------------cCCchHHHHHHHHHHHHHHHhhc
Confidence            34455555555433          346778888888887                  899999999999999998763  


Q ss_pred             ---------HHHHHHHHHHHHHcCCCchHHHHHHHH
Q 021445          280 ---------LKGALLDTEFAMRDGDDNVKALFRQGQ  306 (312)
Q Consensus       280 ---------~~~Ai~~~~~al~l~p~~~Ka~~rrg~  306 (312)
                               |++|.+++.+|...+|+|.  +||++.
T Consensus        87 ~d~~~A~~~F~kA~~~FqkAv~~~P~ne--~Y~ksL  120 (186)
T PF06552_consen   87 PDTAEAEEYFEKATEYFQKAVDEDPNNE--LYRKSL  120 (186)
T ss_dssp             --HHHHHHHHHHHHHHHHHHHHH-TT-H--HHHHHH
T ss_pred             CChHHHHHHHHHHHHHHHHHHhcCCCcH--HHHHHH
Confidence                     8899999999999999985  555543

Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.

>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A

Probab=96.91  E-value=0.0016  Score=38.96  Aligned_cols=29  Identities=21%  Similarity=0.105  Sum_probs=24.8

Q ss_pred             HHhHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 021445          266 IFTNSSACKLKLGDLKGALLDTEFAMRDG  294 (312)
Q Consensus       266 ~~~N~a~~~~kl~~~~~Ai~~~~~al~l~  294 (312)
                      +|.|+|.+|.++|+|++|++.+.++|.+.
T Consensus         1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l~   29 (36)
T PF13176_consen    1 ALNNLGRIYRQQGDYEKAIEYYEQALALA   29 (36)
T ss_dssp             HHHHHHHHHHHCT-HHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence            47899999999999999999999977543

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=96.85  E-value=0.0037  Score=55.44  Aligned_cols=73  Identities=11%  Similarity=0.042  Sum_probs=61.9

Q ss_pred             hhhHhhhhhHHhhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHcCCHHHHHHHHHHHHH
Q 021445          213 DSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMR  292 (312)
Q Consensus       213 ~~~k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~  292 (312)
                      ..+.-.|..++..|+|++|+..|.+++.....               .+....++.+++.|+.++|++++|+..+.++++
T Consensus       181 ~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~---------------s~~~~dAl~klg~~~~~~g~~~~A~~~~~~vi~  245 (263)
T PRK10803        181 NANYWLGQLNYNKGKKDDAAYYFASVVKNYPK---------------SPKAADAMFKVGVIMQDKGDTAKAKAVYQQVIK  245 (263)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC---------------CcchhHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            45678899999999999999999999984221               244566899999999999999999999999999


Q ss_pred             cCCCchHH
Q 021445          293 DGDDNVKA  300 (312)
Q Consensus       293 l~p~~~Ka  300 (312)
                      ..|+..-|
T Consensus       246 ~yP~s~~a  253 (263)
T PRK10803        246 KYPGTDGA  253 (263)
T ss_pred             HCcCCHHH
Confidence            99987744

>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]

Probab=96.84  E-value=0.0051  Score=54.60  Aligned_cols=82  Identities=18%  Similarity=0.107  Sum_probs=64.0

Q ss_pred             hhhhhHhhhhhHHhhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHcC---CHHHHHHHH
Q 021445          211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLG---DLKGALLDT  287 (312)
Q Consensus       211 ~~~~~k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~---~~~~Ai~~~  287 (312)
                      .++.|--.|..++..+++..|...|.+|++                  +.+.+..++.-.|.+++...   .-.++...+
T Consensus       155 d~egW~~Lg~~ym~~~~~~~A~~AY~~A~r------------------L~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll  216 (287)
T COG4235         155 DAEGWDLLGRAYMALGRASDALLAYRNALR------------------LAGDNPEILLGLAEALYYQAGQQMTAKARALL  216 (287)
T ss_pred             CchhHHHHHHHHHHhcchhHHHHHHHHHHH------------------hCCCCHHHHHHHHHHHHHhcCCcccHHHHHHH
Confidence            566788999999999999999999999999                  45556666666777766654   356777777


Q ss_pred             HHHHHcCCCchHHHHHHHHHhhh
Q 021445          288 EFAMRDGDDNVKALFRQGQVSII  310 (312)
Q Consensus       288 ~~al~l~p~~~Ka~~rrg~a~~~  310 (312)
                      ++||.+||.++.+++-.|.++..
T Consensus       217 ~~al~~D~~~iral~lLA~~afe  239 (287)
T COG4235         217 RQALALDPANIRALSLLAFAAFE  239 (287)
T ss_pred             HHHHhcCCccHHHHHHHHHHHHH
Confidence            78888888888887777776653

>KOG1840 consensus Kinesin light chain [Cytoskeleton]

Probab=96.81  E-value=0.0074  Score=58.24  Aligned_cols=91  Identities=18%  Similarity=0.055  Sum_probs=71.1

Q ss_pred             hhhhhHhhhhhHHhhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHcCCHHHHHHHHHHH
Q 021445          211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA  290 (312)
Q Consensus       211 ~~~~~k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~a  290 (312)
                      .+..+.+.+..+-..++|++|...|+++++++...+          ...++.....+.|+|.+|+++|+|++|.+.+.+|
T Consensus       324 v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~----------g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~a  393 (508)
T KOG1840|consen  324 VAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAP----------GEDNVNLAKIYANLAELYLKMGKYKEAEELYKKA  393 (508)
T ss_pred             HHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhc----------cccchHHHHHHHHHHHHHHHhcchhHHHHHHHHH
Confidence            445567888888899999999999999999875321          1123456779999999999999999999999999


Q ss_pred             HHcC--------CCchHHHHHHHHHhhhh
Q 021445          291 MRDG--------DDNVKALFRQGQVSIIL  311 (312)
Q Consensus       291 l~l~--------p~~~Ka~~rrg~a~~~L  311 (312)
                      |.+.        +.-.+.+...|.+|..+
T Consensus       394 i~~~~~~~~~~~~~~~~~l~~la~~~~~~  422 (508)
T KOG1840|consen  394 IQILRELLGKKDYGVGKPLNQLAEAYEEL  422 (508)
T ss_pred             HHHHHhcccCcChhhhHHHHHHHHHHHHh
Confidence            9553        33456777777777543

>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=96.75  E-value=0.0049  Score=54.01  Aligned_cols=85  Identities=16%  Similarity=0.128  Sum_probs=70.3

Q ss_pred             hhhhHhhhhhHHhhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHcCCHHHHHHHHHHHH
Q 021445          212 VDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAM  291 (312)
Q Consensus       212 ~~~~k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al  291 (312)
                      ++++.+.+-.+++.|+|.+|...|..-|+-...               ......++.=++.|++.+|+|++|...+..+.
T Consensus       141 ~~~~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~---------------s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~  205 (262)
T COG1729         141 ATKLYNAALDLYKSGDYAEAEQAFQAFIKKYPN---------------STYTPNAYYWLGESLYAQGDYEDAAYIFARVV  205 (262)
T ss_pred             hhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC---------------CcccchhHHHHHHHHHhcccchHHHHHHHHHH
Confidence            344899999999999999999999999984322               12334467779999999999999999999999


Q ss_pred             HcCCCchH---HHHHHHHHhhhh
Q 021445          292 RDGDDNVK---ALFRQGQVSIIL  311 (312)
Q Consensus       292 ~l~p~~~K---a~~rrg~a~~~L  311 (312)
                      +-.|++.|   +++..|.+...|
T Consensus       206 k~~P~s~KApdallKlg~~~~~l  228 (262)
T COG1729         206 KDYPKSPKAPDALLKLGVSLGRL  228 (262)
T ss_pred             HhCCCCCCChHHHHHHHHHHHHh
Confidence            99888776   599999988765

>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A

Probab=96.74  E-value=0.0029  Score=43.34  Aligned_cols=38  Identities=29%  Similarity=0.218  Sum_probs=35.4

Q ss_pred             HHHcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHhhhh
Q 021445          274 KLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQVSIIL  311 (312)
Q Consensus       274 ~~kl~~~~~Ai~~~~~al~l~p~~~Ka~~rrg~a~~~L  311 (312)
                      +++.|+|++|++.+.+++..+|++..+++..|.+|..+
T Consensus         1 ll~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~   38 (68)
T PF14559_consen    1 LLKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQ   38 (68)
T ss_dssp             HHHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHT
T ss_pred             ChhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHc
Confidence            46889999999999999999999999999999999864

...

>KOG4340 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.74  E-value=0.0017  Score=57.59  Aligned_cols=64  Identities=19%  Similarity=0.222  Sum_probs=55.5

Q ss_pred             hhhhhHhhhhhHHhhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHcCCHHHHHHHHHHH
Q 021445          211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA  290 (312)
Q Consensus       211 ~~~~~k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~a  290 (312)
                      .+..+.+.|.-+|++|+|++|+++|+.|+++                  ....+.+-.|+|+|+++.++|..|++..++.
T Consensus       143 ~Ad~~in~gCllykegqyEaAvqkFqaAlqv------------------sGyqpllAYniALaHy~~~qyasALk~iSEI  204 (459)
T KOG4340|consen  143 EADGQINLGCLLYKEGQYEAAVQKFQAALQV------------------SGYQPLLAYNLALAHYSSRQYASALKHISEI  204 (459)
T ss_pred             ccchhccchheeeccccHHHHHHHHHHHHhh------------------cCCCchhHHHHHHHHHhhhhHHHHHHHHHHH
Confidence            4566789999999999999999999999994                  3334557789999999999999999999998


Q ss_pred             HH
Q 021445          291 MR  292 (312)
Q Consensus       291 l~  292 (312)
                      ++
T Consensus       205 ie  206 (459)
T KOG4340|consen  205 IE  206 (459)
T ss_pred             HH
Confidence            84

>COG4070 Predicted peptidyl-prolyl cis-trans isomerase (rotamase), cyclophilin family [Posttranslational modification, protein turnover, chaperones]

Probab=96.72  E-value=0.0053  Score=55.92  Aligned_cols=104  Identities=27%  Similarity=0.444  Sum_probs=69.4

Q ss_pred             eeeeEEEEEEeCCCCchhHHhHHHHhhCCCCCCCCCCCCceecCCEEEEee--cCCeEEeCCCCCCCCCCCCcccCCCCC
Q 021445           15 ELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRVI--KGFMIQGGDISAGDGTGGESIYGLKFE   92 (312)
Q Consensus        15 ~~~G~i~ieL~~~~aP~~~~nF~~l~~~~~~~~~~~~~~~~Y~g~~~~rv~--~~~~iq~G~~~~~~~~~~~~~~~~~~~   92 (312)
                      ...-.+.++|.++ +|+++++|+.|...+.                 .||.  .+.+|.           ..+....+.+
T Consensus       200 rifTy~eve~s~n-sP~saEH~lalmedG~-----------------lri~~~tntfis-----------~~~lq~~~~~  250 (512)
T COG4070         200 RIFTYFEVELSRN-SPKSAEHFLALMEDGT-----------------LRIDVTTNTFIS-----------DDTLQEEKVP  250 (512)
T ss_pred             EEEEEEEEEeCCC-CchhHHHHHHHhhcce-----------------EEEEEeccceee-----------ccccccccCC
Confidence            3345788999887 7999999999988762                 2331  222221           1223345566


Q ss_pred             CCcccccCCCcceEEeecCCCCCCCceEEEecCCCCCCCCCCceEEEEEeChHHHHHHhc
Q 021445           93 DENFELKHERKGMLSMANAGPNTNGSQFFITTTRTSHLDGKHVVFGRVIKGMGVVRSIEH  152 (312)
Q Consensus        93 ~e~~~~~~~~~G~l~~~~~~~~~~~sqF~I~~~~~~~ld~~~~vfG~V~~G~~vl~~i~~  152 (312)
                      .||+.++  .+|.|+..+.|-.  ...-||.-.+-+. .-.|.|+|||++||++++--..
T Consensus       251 ~en~d~R--erG~iTvRn~Gvg--eGrvYIyRedR~s-s~sHnvVGrV~eGiELid~a~e  305 (512)
T COG4070         251 EENFDLR--ERGAITVRNVGVG--EGRVYIYREDRPS-SLSHNVVGRVIEGIELIDLAEE  305 (512)
T ss_pred             hhhhhhh--hcceEEEEeeecc--cceEEEEecCCCC-ccccceeeeeecceEEEEeccc
Confidence            6766544  4799999998733  4567887655332 2358999999999998876544

>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals

Probab=96.66  E-value=0.0059  Score=56.16  Aligned_cols=78  Identities=13%  Similarity=0.042  Sum_probs=57.9

Q ss_pred             hhHhhhhhHHhhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHcCCHHHHHHHHHHHHHc
Q 021445          214 SIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRD  293 (312)
Q Consensus       214 ~~k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~l  293 (312)
                      .+...|..+...|++++|+..|+++++                  +.|....++.++|.+++.+|++++|+..+.+++..
T Consensus       116 ~~~~~a~~~~~~G~~~~A~~~~~~al~------------------~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~  177 (355)
T cd05804         116 LLGMLAFGLEEAGQYDRAEEAARRALE------------------LNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDT  177 (355)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHh------------------hCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhc
Confidence            344677788899999999999999998                  34444667788888888888888888888888887


Q ss_pred             CCCch----HHHHHHHHHhh
Q 021445          294 GDDNV----KALFRQGQVSI  309 (312)
Q Consensus       294 ~p~~~----Ka~~rrg~a~~  309 (312)
                      .|...    ..|+.+|.++.
T Consensus       178 ~~~~~~~~~~~~~~la~~~~  197 (355)
T cd05804         178 WDCSSMLRGHNWWHLALFYL  197 (355)
T ss_pred             cCCCcchhHHHHHHHHHHHH
Confidence            76432    23445565554

A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.

>KOG3785 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.66  E-value=0.013  Score=53.23  Aligned_cols=79  Identities=16%  Similarity=0.130  Sum_probs=68.3

Q ss_pred             hHhhhhhHHhhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 021445          215 IKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDG  294 (312)
Q Consensus       215 ~k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~l~  294 (312)
                      -...+-..|.+-.|++||+.|++.|.                  -++....+-.++|+||+||.-|+-+-+...--|+--
T Consensus       154 qLSLAsvhYmR~HYQeAIdvYkrvL~------------------dn~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q~  215 (557)
T KOG3785|consen  154 QLSLASVHYMRMHYQEAIDVYKRVLQ------------------DNPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQF  215 (557)
T ss_pred             HHhHHHHHHHHHHHHHHHHHHHHHHh------------------cChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHhC
Confidence            44566777888899999999999998                  667888899999999999999999999999899999


Q ss_pred             CCchHHHHHHHHHhhhh
Q 021445          295 DDNVKALFRQGQVSIIL  311 (312)
Q Consensus       295 p~~~Ka~~rrg~a~~~L  311 (312)
                      |+..-|.--++..++.|
T Consensus       216 pdStiA~NLkacn~fRl  232 (557)
T KOG3785|consen  216 PDSTIAKNLKACNLFRL  232 (557)
T ss_pred             CCcHHHHHHHHHHHhhh
Confidence            99998888887766654

>PRK10153 DNA-binding transcriptional activator CadC; Provisional

Probab=96.65  E-value=0.0056  Score=59.63  Aligned_cols=67  Identities=13%  Similarity=-0.003  Sum_probs=57.2

Q ss_pred             hhhhhHHhhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Q 021445          217 VFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDD  296 (312)
Q Consensus       217 ~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~l~p~  296 (312)
                      ..|-.+..+|++++|...|++|+.                  +++ ....|..+|.++...|++++|++.+.+|++++|.
T Consensus       425 ala~~~~~~g~~~~A~~~l~rAl~------------------L~p-s~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~  485 (517)
T PRK10153        425 ILAVQALVKGKTDEAYQAINKAID------------------LEM-SWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPG  485 (517)
T ss_pred             HHHHHHHhcCCHHHHHHHHHHHHH------------------cCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Confidence            345556678999999999999999                  556 3678999999999999999999999999999999


Q ss_pred             chHHHH
Q 021445          297 NVKALF  302 (312)
Q Consensus       297 ~~Ka~~  302 (312)
                      ++.-|.
T Consensus       486 ~pt~~~  491 (517)
T PRK10153        486 ENTLYW  491 (517)
T ss_pred             CchHHH
Confidence            875443

>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A

Probab=96.65  E-value=0.0037  Score=36.06  Aligned_cols=32  Identities=22%  Similarity=0.273  Sum_probs=29.8

Q ss_pred             HHhHHHHHHHHcCCHHHHHHHHHHHHHcCCCc
Q 021445          266 IFTNSSACKLKLGDLKGALLDTEFAMRDGDDN  297 (312)
Q Consensus       266 ~~~N~a~~~~kl~~~~~Ai~~~~~al~l~p~~  297 (312)
                      ++.++|.|+.++|++++|++.+++++...|++
T Consensus         2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~s   33 (33)
T PF13174_consen    2 ALYRLARCYYKLGDYDEAIEYFQRLIKRYPDS   33 (33)
T ss_dssp             HHHHHHHHHHHHCHHHHHHHHHHHHHHHSTTS
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHHCcCC
Confidence            67899999999999999999999999998864

>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B

Probab=96.62  E-value=0.0047  Score=55.11  Aligned_cols=60  Identities=20%  Similarity=0.165  Sum_probs=36.1

Q ss_pred             hHhhhhhHHhhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHcCCHHHHHHHHHHHHH
Q 021445          215 IKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMR  292 (312)
Q Consensus       215 ~k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~  292 (312)
                      +...|..++..|++++|+..|.+++.                  ..|.....+.+.|.++.+.|++++|+....++++
T Consensus       217 ~~~la~~~~~lg~~~~Al~~~~~~~~------------------~~p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~  276 (280)
T PF13429_consen  217 WDALAAAYLQLGRYEEALEYLEKALK------------------LNPDDPLWLLAYADALEQAGRKDEALRLRRQALR  276 (280)
T ss_dssp             CHHHHHHHHHHT-HHHHHHHHHHHHH------------------HSTT-HHHHHHHHHHHT-----------------
T ss_pred             HHHHHHHhcccccccccccccccccc------------------cccccccccccccccccccccccccccccccccc
Confidence            35678888899999999999999998                  6777889999999999999999999999988875

>KOG4814 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.62  E-value=0.011  Score=57.19  Aligned_cols=74  Identities=18%  Similarity=0.173  Sum_probs=63.4

Q ss_pred             hhHhhhhhHHhhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHcCCHHHHHHHHHHHHHc
Q 021445          214 SIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRD  293 (312)
Q Consensus       214 ~~k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~l  293 (312)
                      .+-+.+..+|+.++|..|++.|...+.++...            ..+.....+..|++.||++|.+.+.|++...+|=+.
T Consensus       356 iLWn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D------------~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~  423 (872)
T KOG4814|consen  356 LLWNTAKKLFKMEKYVVSIRFYKLSLKDIISD------------NYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEV  423 (872)
T ss_pred             HHHHhhHHHHHHHHHHHHHHHHHHHHHhccch------------hhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhh
Confidence            35688999999999999999999999965331            134455889999999999999999999999999999


Q ss_pred             CCCchH
Q 021445          294 GDDNVK  299 (312)
Q Consensus       294 ~p~~~K  299 (312)
                      ||.++-
T Consensus       424 d~~~~l  429 (872)
T KOG4814|consen  424 DRQSPL  429 (872)
T ss_pred             ccccHH
Confidence            998763

>PF13431 TPR_17: Tetratricopeptide repeat

Probab=96.59  E-value=0.0027  Score=37.55  Aligned_cols=25  Identities=12%  Similarity=0.026  Sum_probs=22.9

Q ss_pred             HHHHHHcCCCchHHHHHHHHHhhhh
Q 021445          287 TEFAMRDGDDNVKALFRQGQVSIIL  311 (312)
Q Consensus       287 ~~~al~l~p~~~Ka~~rrg~a~~~L  311 (312)
                      |++||+++|+++.+|+.+|.+|..+
T Consensus         2 y~kAie~~P~n~~a~~nla~~~~~~   26 (34)
T PF13431_consen    2 YKKAIELNPNNAEAYNNLANLYLNQ   26 (34)
T ss_pred             hHHHHHHCCCCHHHHHHHHHHHHHC
Confidence            7899999999999999999998754

>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]

Probab=96.59  E-value=0.0041  Score=62.70  Aligned_cols=80  Identities=16%  Similarity=0.186  Sum_probs=49.0

Q ss_pred             hhhHhhhhhHHhhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHH-HHHHHhHHHHHHHHcCCHHHHHHHHHHHH
Q 021445          213 DSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKT-KSQIFTNSSACKLKLGDLKGALLDTEFAM  291 (312)
Q Consensus       213 ~~~k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~N~a~~~~kl~~~~~Ai~~~~~al  291 (312)
                      +.+.+.|..+..+|+|++|...|.+++..                  ++. ....+.-+++.|++.++++.|+.++++++
T Consensus       308 es~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~------------------~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~  369 (1018)
T KOG2002|consen  308 ESFYQLGRSYHAQGDFEKAFKYYMESLKA------------------DNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVL  369 (1018)
T ss_pred             HHHHHHHHHHHhhccHHHHHHHHHHHHcc------------------CCCCccccccchhHHHHHhchHHHHHHHHHHHH
Confidence            33556666666666666666666666662                  111 23345566666666666666666666666


Q ss_pred             HcCCCchHHHHHHHHHhhh
Q 021445          292 RDGDDNVKALFRQGQVSII  310 (312)
Q Consensus       292 ~l~p~~~Ka~~rrg~a~~~  310 (312)
                      +..|++.+...-.|..|..
T Consensus       370 k~~p~~~etm~iLG~Lya~  388 (1018)
T KOG2002|consen  370 KQLPNNYETMKILGCLYAH  388 (1018)
T ss_pred             HhCcchHHHHHHHHhHHHh
Confidence            6666666666666665544

>TIGR03268 methan_mark_3 putative methanogenesis marker protein 3

Probab=96.57  E-value=0.015  Score=54.96  Aligned_cols=114  Identities=19%  Similarity=0.311  Sum_probs=71.2

Q ss_pred             EEEEEEeCCCCchhHHhHHHHhhCCCCCCCCCCCCceecCCEEEEeecCCeEEeCCCCCCCCCCCCcccCCCCCCCcccc
Q 021445           19 RIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRVIKGFMIQGGDISAGDGTGGESIYGLKFEDENFEL   98 (312)
Q Consensus        19 ~i~ieL~~~~aP~~~~nF~~l~~~~~~~~~~~~~~~~Y~g~~~~rv~~~~~iq~G~~~~~~~~~~~~~~~~~~~~e~~~~   98 (312)
                      -|.|+||.+.||.++..|.++.--....         ==-..+|-..++..+--|+..          ++..+.+||.+-
T Consensus       376 vi~IeLydd~AP~s~~yFRk~tGL~~~~---------VG~L~v~F~~~d~~mFk~~~~----------~~k~LiPEN~P~  436 (503)
T TIGR03268       376 VIEIELYDDNAPRSVWYFRKFTGLKTKP---------VGRLPVHFAFKEMIMFKGNKE----------LAKGLIPENTPE  436 (503)
T ss_pred             EEEEEEcccCCchHHHHHHHhcCCcccc---------cceeEEEEEeCCeeEeccCch----------hccccCCCCCCC
Confidence            5889999999999999999985443100         112456667777655544432          123356677666


Q ss_pred             cCCCcceEEeecCCCC---CCCceEEEe--cCCC-CCCCCCCceEEEEEeChHHHHHHhc
Q 021445           99 KHERKGMLSMANAGPN---TNGSQFFIT--TTRT-SHLDGKHVVFGRVIKGMGVVRSIEH  152 (312)
Q Consensus        99 ~~~~~G~l~~~~~~~~---~~~sqF~I~--~~~~-~~ld~~~~vfG~V~~G~~vl~~i~~  152 (312)
                      ....+|.|++.|....   ..|-+|-=+  ++|. ..+++.+ ++|+|+++++.|.++..
T Consensus       437 ~~V~ag~IgvTN~a~k~~G~IGVRl~d~defGPTGE~F~gTN-IiG~Vv~~~e~Lk~~Ke  495 (503)
T TIGR03268       437 DKVEAGVIGVTNQACKHVGMIGVRLEDSDEFGPTGEPFSGTN-IIGRVVEGMERLKGLKE  495 (503)
T ss_pred             CccccceEeeechhhhcCceEEEEccCCcccCCCCCCccCcc-eEEEecCChhHhccccc
Confidence            6678899998876422   112221111  1332 2455544 56999999999988765

A single member of this protein family is found in each of the first ten complete genome sequences of archaeal methanogens, and nowhere else. This protein family was detected by the method of partial phylogenetic profiling (see Haft, et al., 2006). The functions of proteins in this family are unknown, but their role is likely one essential to methanogenesis.

>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]

Probab=96.57  E-value=0.011  Score=59.15  Aligned_cols=101  Identities=11%  Similarity=0.082  Sum_probs=72.4

Q ss_pred             hhhhhHhhhhhHHhhhcHHHHHHHHHHHHHHhhhccc---------cCCCCchh-------hhHHHHHHHHHHhHHHHHH
Q 021445          211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWE---------KEGIDEGK-------SSSLRKTKSQIFTNSSACK  274 (312)
Q Consensus       211 ~~~~~k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~---------~~~~~~~~-------~~~~~~~~~~~~~N~a~~~  274 (312)
                      .+..+..++|.+|-.|++++|.+...++|+.-...+.         .+..+-+.       ...++|.....|.-++--.
T Consensus       138 ~l~~ll~eAN~lfarg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls  217 (895)
T KOG2076|consen  138 ELRQLLGEANNLFARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLS  217 (895)
T ss_pred             HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHH
Confidence            4778899999999999999999999999984211100         00001000       1123444445666666677


Q ss_pred             HHcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHhhhh
Q 021445          275 LKLGDLKGALLDTEFAMRDGDDNVKALFRQGQVSIIL  311 (312)
Q Consensus       275 ~kl~~~~~Ai~~~~~al~l~p~~~Ka~~rrg~a~~~L  311 (312)
                      .+++++.+|.-++++||+.+|.+.+-+++|+..|..+
T Consensus       218 ~~~~~i~qA~~cy~rAI~~~p~n~~~~~ers~L~~~~  254 (895)
T KOG2076|consen  218 EQLGNINQARYCYSRAIQANPSNWELIYERSSLYQKT  254 (895)
T ss_pred             HhcccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHh
Confidence            7788889999999999999999999999999888643

>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals

Probab=96.51  E-value=0.014  Score=53.67  Aligned_cols=100  Identities=11%  Similarity=-0.062  Sum_probs=72.5

Q ss_pred             hhhhHhhhhhHHhhhcHHHHHHHHHHHHHHhhhccc-----------cC-CCCchhh-h------HHHHHHHHHHhHHHH
Q 021445          212 VDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWE-----------KE-GIDEGKS-S------SLRKTKSQIFTNSSA  272 (312)
Q Consensus       212 ~~~~k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~-----------~~-~~~~~~~-~------~~~~~~~~~~~N~a~  272 (312)
                      .+...-++..++..|++++|+..+.++++.......           .. ....... .      ...+.....+.++|.
T Consensus        43 ~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~  122 (355)
T cd05804          43 RERAHVEALSAWIAGDLPKALALLEQLLDDYPRDLLALKLHLGAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAF  122 (355)
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHhHHHHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHH
Confidence            344566788999999999999999999875321110           00 0000000 0      123444567789999


Q ss_pred             HHHHcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHhhhh
Q 021445          273 CKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQVSIIL  311 (312)
Q Consensus       273 ~~~kl~~~~~Ai~~~~~al~l~p~~~Ka~~rrg~a~~~L  311 (312)
                      ++..+|++++|+..+.++++++|++.-++...|.+++.+
T Consensus       123 ~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~  161 (355)
T cd05804         123 GLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQ  161 (355)
T ss_pred             HHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHc
Confidence            999999999999999999999999999999999888753

A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.

>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]

Probab=96.38  E-value=0.0096  Score=60.17  Aligned_cols=84  Identities=18%  Similarity=0.185  Sum_probs=72.1

Q ss_pred             hhhhHhhhhhHHhhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHcCCHHHHHHHHHHHH
Q 021445          212 VDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAM  291 (312)
Q Consensus       212 ~~~~k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al  291 (312)
                      ...|.+.|+.++..|+|..|++.|+.+++.+.                ......++.-+|.++++-+.|.+|.+...+|+
T Consensus       680 ~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~----------------~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~  743 (1018)
T KOG2002|consen  680 EDVWLNLAHCYVEQGQYRLAIQMYENCLKKFY----------------KKNRSEVLHYLARAWYEAGKLQEAKEALLKAR  743 (1018)
T ss_pred             CceeeeHHHHHHHHHHHHHHHHHHHHHHHHhc----------------ccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence            44578999999999999999999999998542                23345577779999999999999999999999


Q ss_pred             HcCCCchHHHHHHHHHhhhh
Q 021445          292 RDGDDNVKALFRQGQVSIIL  311 (312)
Q Consensus       292 ~l~p~~~Ka~~rrg~a~~~L  311 (312)
                      .+.|.+.-..|..|.++..+
T Consensus       744 ~~~p~~~~v~FN~a~v~kkl  763 (1018)
T KOG2002|consen  744 HLAPSNTSVKFNLALVLKKL  763 (1018)
T ss_pred             HhCCccchHHhHHHHHHHHH
Confidence            99999999999999887654

>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane

Probab=96.35  E-value=0.019  Score=40.62  Aligned_cols=68  Identities=18%  Similarity=0.218  Sum_probs=56.6

Q ss_pred             hhhhhHhhhhhHHhhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHcCCHHHHHHHHHHH
Q 021445          211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA  290 (312)
Q Consensus       211 ~~~~~k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~a  290 (312)
                      .+....++|-.+|.+.+.++|+..+++||+-...               .+..-.++--++.+|..+|+|.++++.+.+=
T Consensus         5 ~ak~~ie~GlkLY~~~~~~~Al~~W~~aL~k~~~---------------~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q   69 (80)
T PF10579_consen    5 QAKQQIEKGLKLYHQNETQQALQKWRKALEKITD---------------REDRFRVLGYLIQAHMEWGKYREMLAFALQQ   69 (80)
T ss_pred             HHHHHHHHHHHHhccchHHHHHHHHHHHHhhcCC---------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4556778999999999999999999999995322               3456678888999999999999999998877


Q ss_pred             HHc
Q 021445          291 MRD  293 (312)
Q Consensus       291 l~l  293 (312)
                      +.+
T Consensus        70 ~~~   72 (80)
T PF10579_consen   70 LEI   72 (80)
T ss_pred             HHH
Confidence            654

Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane

>PRK14574 hmsH outer membrane protein; Provisional

Probab=96.31  E-value=0.017  Score=59.30  Aligned_cols=99  Identities=7%  Similarity=-0.129  Sum_probs=68.7

Q ss_pred             hhhhHhhhhhHHhhhcHHHHHHHHHHHHHHhhhcc-c--------cCCCCchhhhH-H------HHHHHHHHhHHHHHHH
Q 021445          212 VDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICW-E--------KEGIDEGKSSS-L------RKTKSQIFTNSSACKL  275 (312)
Q Consensus       212 ~~~~k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~-~--------~~~~~~~~~~~-~------~~~~~~~~~N~a~~~~  275 (312)
                      +.....++-..+++|+|..|+..|.++++.-...+ .        ......++... +      .+.....+..+|..+.
T Consensus        34 ~~~~y~~aii~~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly~  113 (822)
T PRK14574         34 ADTQYDSLIIRARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAARAYR  113 (822)
T ss_pred             hhHHHHHHHHHHhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHHH
Confidence            44578899999999999999999999997432211 0        00011111110 0      1222445555678999


Q ss_pred             HcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHhhh
Q 021445          276 KLGDLKGALLDTEFAMRDGDDNVKALFRQGQVSII  310 (312)
Q Consensus       276 kl~~~~~Ai~~~~~al~l~p~~~Ka~~rrg~a~~~  310 (312)
                      .+|+|++|++.+.++++.+|+++.+++-.+.++..
T Consensus       114 ~~gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~  148 (822)
T PRK14574        114 NEKRWDQALALWQSSLKKDPTNPDLISGMIMTQAD  148 (822)
T ss_pred             HcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhh
Confidence            99999999999999999999999999866665543

>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=96.22  E-value=0.0079  Score=35.12  Aligned_cols=30  Identities=30%  Similarity=0.532  Sum_probs=26.2

Q ss_pred             hhhhHhhhhhHHhhhcHHHHHHHHHHHHHH
Q 021445          212 VDSIKVFGNEHYKKQDYKMALRKYRKALRY  241 (312)
Q Consensus       212 ~~~~k~~Gn~~~~~~~y~~A~~~Y~kal~~  241 (312)
                      |..+...|..++..++|++|+..|++||++
T Consensus         1 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~   30 (34)
T PF00515_consen    1 AEAYYNLGNAYFQLGDYEEALEYYQRALEL   30 (34)
T ss_dssp             HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHhCCchHHHHHHHHHHHH
Confidence            356789999999999999999999999993

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....

>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi

Probab=96.22  E-value=0.011  Score=55.45  Aligned_cols=64  Identities=22%  Similarity=0.343  Sum_probs=57.0

Q ss_pred             hhhhHhhhhhHHhhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHcCCHHHHHHHHHHHH
Q 021445          212 VDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAM  291 (312)
Q Consensus       212 ~~~~k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al  291 (312)
                      +..|..++.-+.++++|+.|+...++|++                  +.|.....|..+|.||.++|+|++|+...+.+-
T Consensus       234 ~~LL~~Qa~fLl~k~~~~lAL~iAk~av~------------------lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P  295 (395)
T PF09295_consen  234 SELLNLQAEFLLSKKKYELALEIAKKAVE------------------LSPSEFETWYQLAECYIQLGDFENALLALNSCP  295 (395)
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHH------------------hCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence            56678899999999999999999999999                  678888999999999999999999998887554


Q ss_pred             Hc
Q 021445          292 RD  293 (312)
Q Consensus       292 ~l  293 (312)
                      .+
T Consensus       296 m~  297 (395)
T PF09295_consen  296 ML  297 (395)
T ss_pred             CC
Confidence            44

They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].

>PRK00969 hypothetical protein; Provisional

Probab=96.16  E-value=0.032  Score=52.90  Aligned_cols=112  Identities=19%  Similarity=0.291  Sum_probs=71.4

Q ss_pred             EEEEEEeCCCCchhHHhHHHHhhCCCCCCCCCCCCceecCCEEEEeecCCeEEeCCCCCCCCCCCCcccCCCCCCCcccc
Q 021445           19 RIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRVIKGFMIQGGDISAGDGTGGESIYGLKFEDENFEL   98 (312)
Q Consensus        19 ~i~ieL~~~~aP~~~~nF~~l~~~~~~~~~~~~~~~~Y~g~~~~rv~~~~~iq~G~~~~~~~~~~~~~~~~~~~~e~~~~   98 (312)
                      -|.|+||.+.||.++..|.++.--....         ==-..+|-..++.++--|+..          ++..+.+||.+-
T Consensus       379 vi~IeLydd~AP~s~~yFR~~tGL~~~~---------VG~L~v~F~~~d~~lFk~~~~----------~~k~liPEN~P~  439 (508)
T PRK00969        379 LIEIELYDDKAPRTVWYFRKVTGLKTKP---------VGKLPVYFKYEDTYLFKGNIE----------YAKGLLPENTPE  439 (508)
T ss_pred             EEEEEEcCcCCchHHHHHHHhcCCcccc---------cceeEEEEEeCCeEEEccChh----------hccccCCCCCCC
Confidence            5889999999999999999985543100         112456667788666655432          133356777766


Q ss_pred             cCCCcceEEeecCCCCCCCceEEEec------CCC-CCCCCCCceEEEEEeChHHHHHHhc
Q 021445           99 KHERKGMLSMANAGPNTNGSQFFITT------TRT-SHLDGKHVVFGRVIKGMGVVRSIEH  152 (312)
Q Consensus        99 ~~~~~G~l~~~~~~~~~~~sqF~I~~------~~~-~~ld~~~~vfG~V~~G~~vl~~i~~  152 (312)
                      ....+|.|++.|......| -.=|-|      +|. ..+++ --++|+|+ +++.|.++..
T Consensus       440 ~~V~ag~IgvTN~a~k~~G-~iGVR~~d~d~fGPTGE~F~g-TNIIGrVv-~~e~Lk~lKe  497 (508)
T PRK00969        440 DKVKAGEIGVTNMAAKYKG-MIGVRLSDNDEFGPTGEPFEG-TNIIGRVV-NLEKLKKLKE  497 (508)
T ss_pred             CccccceEeeechhhhcCc-eEEEEccCCcccCCCCCCccC-ceeEEEec-ChHHhccccc
Confidence            6778899998876422111 111222      332 24555 34679999 9998888765

>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=96.09  E-value=0.01  Score=34.48  Aligned_cols=30  Identities=23%  Similarity=0.450  Sum_probs=26.0

Q ss_pred             hhhhHhhhhhHHhhhcHHHHHHHHHHHHHH
Q 021445          212 VDSIKVFGNEHYKKQDYKMALRKYRKALRY  241 (312)
Q Consensus       212 ~~~~k~~Gn~~~~~~~y~~A~~~Y~kal~~  241 (312)
                      ++.+...|..+++.|+|++|++.|++|+++
T Consensus         1 a~~~~~lg~~~~~~~~~~~A~~~~~~al~l   30 (34)
T PF07719_consen    1 AEAWYYLGQAYYQLGNYEEAIEYFEKALEL   30 (34)
T ss_dssp             HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence            356788999999999999999999999984

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....

>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans

Probab=96.06  E-value=0.038  Score=53.28  Aligned_cols=78  Identities=13%  Similarity=0.125  Sum_probs=66.4

Q ss_pred             hHhhhhhHHhhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 021445          215 IKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDG  294 (312)
Q Consensus       215 ~k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~l~  294 (312)
                      +..+|.-+..+|+.++|++.|++|+..              .....+....++.-++.|++-+.+|++|.+++.+.++.+
T Consensus       270 l~~~gR~~~~~g~~~~Ai~~~~~a~~~--------------q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s  335 (468)
T PF10300_consen  270 LFFEGRLERLKGNLEEAIESFERAIES--------------QSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKES  335 (468)
T ss_pred             HHHHHHHHHHhcCHHHHHHHHHHhccc--------------hhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhcc
Confidence            577888899999999999999999962              223677788899999999999999999999999999965


Q ss_pred             CCchHHHHHHHHH
Q 021445          295 DDNVKALFRQGQV  307 (312)
Q Consensus       295 p~~~Ka~~rrg~a  307 (312)
                       .+.||+|....|
T Consensus       336 -~WSka~Y~Y~~a  347 (468)
T PF10300_consen  336 -KWSKAFYAYLAA  347 (468)
T ss_pred             -ccHHHHHHHHHH
Confidence             688998876544

In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.

>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]

Probab=96.02  E-value=0.0073  Score=56.76  Aligned_cols=73  Identities=23%  Similarity=0.254  Sum_probs=65.5

Q ss_pred             hHhhhhhHHhhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 021445          215 IKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDG  294 (312)
Q Consensus       215 ~k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~l~  294 (312)
                      +-+++-+.++.++|..|+....+||+                  +.|....+|.-+|.+++++++|.+|+.++.++..+.
T Consensus        41 ~anRa~a~lK~e~~~~Al~Da~kaie------------------~dP~~~K~Y~rrg~a~m~l~~~~~A~~~l~~~~~l~  102 (476)
T KOG0376|consen   41 FANRALAHLKVESFGGALHDALKAIE------------------LDPTYIKAYVRRGTAVMALGEFKKALLDLEKVKKLA  102 (476)
T ss_pred             echhhhhheeechhhhHHHHHHhhhh------------------cCchhhheeeeccHHHHhHHHHHHHHHHHHHhhhcC
Confidence            34567788899999999999999999                  779999999999999999999999999999999999


Q ss_pred             CCchHHHHHHH
Q 021445          295 DDNVKALFRQG  305 (312)
Q Consensus       295 p~~~Ka~~rrg  305 (312)
                      |+.+++.-.-.
T Consensus       103 Pnd~~~~r~~~  113 (476)
T KOG0376|consen  103 PNDPDATRKID  113 (476)
T ss_pred             cCcHHHHHHHH
Confidence            99988764433

>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A

Probab=95.94  E-value=0.017  Score=35.14  Aligned_cols=31  Identities=19%  Similarity=0.058  Sum_probs=26.9

Q ss_pred             HHHHhHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 021445          264 SQIFTNSSACKLKLGDLKGALLDTEFAMRDG  294 (312)
Q Consensus       264 ~~~~~N~a~~~~kl~~~~~Ai~~~~~al~l~  294 (312)
                      +.++.|+|.+|..+|+|++|+..+.+++.+.
T Consensus         2 a~~~~~la~~~~~~g~~~~A~~~~~~al~~~   32 (42)
T PF13374_consen    2 ASALNNLANAYRAQGRYEEALELLEEALEIR   32 (42)
T ss_dssp             HHHHHHHHHHHHHCT-HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhhhcchhhHHHHHHHHHH
Confidence            4578999999999999999999999999653

>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=95.86  E-value=0.011  Score=53.39  Aligned_cols=49  Identities=20%  Similarity=0.256  Sum_probs=41.9

Q ss_pred             HHHHHhHHHHHHHHcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHhhhh
Q 021445          263 KSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQVSIIL  311 (312)
Q Consensus       263 ~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~l~p~~~Ka~~rrg~a~~~L  311 (312)
                      ...+++-+|.|++.+|+|++|.+...+||..+|+++.++..++.+...+
T Consensus       200 t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~  248 (290)
T PF04733_consen  200 TPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHL  248 (290)
T ss_dssp             SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHT
T ss_pred             CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHh
Confidence            3557788999999999999999999999999999999999998876553

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.

>PF12688 TPR_5: Tetratrico peptide repeat

Probab=95.80  E-value=0.052  Score=42.12  Aligned_cols=80  Identities=15%  Similarity=0.030  Sum_probs=61.8

Q ss_pred             hhhhHhhhhhHHhhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHcCCHHHHHHHHHHHH
Q 021445          212 VDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAM  291 (312)
Q Consensus       212 ~~~~k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al  291 (312)
                      ...+.+.|..+...|++++|+...++++.-..               -.+....+...+|.++..+|++++|+..+-.+|
T Consensus        38 ~~a~i~lastlr~LG~~deA~~~L~~~~~~~p---------------~~~~~~~l~~f~Al~L~~~gr~~eAl~~~l~~l  102 (120)
T PF12688_consen   38 RRALIQLASTLRNLGRYDEALALLEEALEEFP---------------DDELNAALRVFLALALYNLGRPKEALEWLLEAL  102 (120)
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCC---------------CccccHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence            45677899999999999999999999997211               012244566778999999999999999999998


Q ss_pred             HcCCCchHHHHHHHHHhhh
Q 021445          292 RDGDDNVKALFRQGQVSII  310 (312)
Q Consensus       292 ~l~p~~~Ka~~rrg~a~~~  310 (312)
                      .-...    .|+|+...+.
T Consensus       103 a~~~~----~y~ra~~~ya  117 (120)
T PF12688_consen  103 AETLP----RYRRAIRFYA  117 (120)
T ss_pred             HHHHH----HHHHHHHHHH
Confidence            63322    7888877654

>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=95.79  E-value=0.027  Score=52.21  Aligned_cols=77  Identities=16%  Similarity=0.122  Sum_probs=69.7

Q ss_pred             hhhhhHhhhhhHHhhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHcCCHHHHHHHHHHH
Q 021445          211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA  290 (312)
Q Consensus       211 ~~~~~k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~a  290 (312)
                      ..+.+.-+|+.+...++.++|+-.|+.|+.                  +.|....+|--+-.||+..+++++|+-.++.+
T Consensus       333 ~~~alilKG~lL~~~~R~~~A~IaFR~Aq~------------------Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~  394 (564)
T KOG1174|consen  333 NHEALILKGRLLIALERHTQAVIAFRTAQM------------------LAPYRLEIYRGLFHSYLAQKRFKEANALANWT  394 (564)
T ss_pred             cchHHHhccHHHHhccchHHHHHHHHHHHh------------------cchhhHHHHHHHHHHHHhhchHHHHHHHHHHH
Confidence            456688899999999999999999999999                  77888999999999999999999999999999


Q ss_pred             HHcCCCchHHHHHHH
Q 021445          291 MRDGDDNVKALFRQG  305 (312)
Q Consensus       291 l~l~p~~~Ka~~rrg  305 (312)
                      ++.=|.+++++---|
T Consensus       395 ~~~~~~sA~~LtL~g  409 (564)
T KOG1174|consen  395 IRLFQNSARSLTLFG  409 (564)
T ss_pred             HHHhhcchhhhhhhc
Confidence            998889988887654

>PRK14574 hmsH outer membrane protein; Provisional

Probab=95.77  E-value=0.026  Score=57.95  Aligned_cols=66  Identities=9%  Similarity=0.089  Sum_probs=44.2

Q ss_pred             hhhHhhhhhHHhhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHcCCHHHHHHHHHHHHH
Q 021445          213 DSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMR  292 (312)
Q Consensus       213 ~~~k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~  292 (312)
                      ..+...|..+..+|+|++|++.|+++++                  ..|....++.-++..+..++++++|++.+.+++.
T Consensus       103 ~~llalA~ly~~~gdyd~Aiely~kaL~------------------~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~  164 (822)
T PRK14574        103 RGLASAARAYRNEKRWDQALALWQSSLK------------------KDPTNPDLISGMIMTQADAGRGGVVLKQATELAE  164 (822)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHh------------------hCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcc
Confidence            3455667788888999999999999998                  3333334444455566666666666666666666


Q ss_pred             cCCC
Q 021445          293 DGDD  296 (312)
Q Consensus       293 l~p~  296 (312)
                      .+|.
T Consensus       165 ~dp~  168 (822)
T PRK14574        165 RDPT  168 (822)
T ss_pred             cCcc
Confidence            6555

>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]

Probab=95.69  E-value=0.028  Score=54.69  Aligned_cols=77  Identities=19%  Similarity=0.271  Sum_probs=63.3

Q ss_pred             hHhhhhhHHhhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 021445          215 IKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDG  294 (312)
Q Consensus       215 ~k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~l~  294 (312)
                      |.-.|--.-..++|.+||.||+.||.                  +.+....++.-+|....+|++|+.....-.+.|+++
T Consensus        78 wHv~gl~~R~dK~Y~eaiKcy~nAl~------------------~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~  139 (700)
T KOG1156|consen   78 WHVLGLLQRSDKKYDEAIKCYRNALK------------------IEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLR  139 (700)
T ss_pred             HHHHHHHHhhhhhHHHHHHHHHHHHh------------------cCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhh
Confidence            44556666677889999999999998                  667778888889999999999999999999999999


Q ss_pred             CCchHHHHHHHHHhh
Q 021445          295 DDNVKALFRQGQVSI  309 (312)
Q Consensus       295 p~~~Ka~~rrg~a~~  309 (312)
                      |.+.-.|+--|.|+.
T Consensus       140 ~~~ra~w~~~Avs~~  154 (700)
T KOG1156|consen  140 PSQRASWIGFAVAQH  154 (700)
T ss_pred             hhhHHHHHHHHHHHH
Confidence            988888877777664

>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function

Probab=95.67  E-value=0.13  Score=41.03  Aligned_cols=87  Identities=11%  Similarity=0.017  Sum_probs=63.0

Q ss_pred             hhhhhhHhhhhhHHhhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHcCCHHHHHHHHHH
Q 021445          210 NAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEF  289 (312)
Q Consensus       210 ~~~~~~k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~  289 (312)
                      +.+..........+..+++..+...+.+.+.-..               -.+.-..+.+.+|.+++..|+|++|+..+.+
T Consensus         9 ~~a~~~y~~~~~~~~~~~~~~~~~~~~~l~~~~~---------------~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~   73 (145)
T PF09976_consen    9 EQASALYEQALQALQAGDPAKAEAAAEQLAKDYP---------------SSPYAALAALQLAKAAYEQGDYDEAKAALEK   73 (145)
T ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCC---------------CChHHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence            3455556666666677777777666666665211               1233456788899999999999999999999


Q ss_pred             HHHcCCCc---hHHHHHHHHHhhhh
Q 021445          290 AMRDGDDN---VKALFRQGQVSIIL  311 (312)
Q Consensus       290 al~l~p~~---~Ka~~rrg~a~~~L  311 (312)
                      ++...|+.   ..+.+|.|.+++.+
T Consensus        74 ~~~~~~d~~l~~~a~l~LA~~~~~~   98 (145)
T PF09976_consen   74 ALANAPDPELKPLARLRLARILLQQ   98 (145)
T ss_pred             HHhhCCCHHHHHHHHHHHHHHHHHc
Confidence            99977554   46888999888754

>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A

Probab=95.63  E-value=0.018  Score=34.30  Aligned_cols=27  Identities=26%  Similarity=0.456  Sum_probs=23.4

Q ss_pred             hHhhhhhHHhhhcHHHHHHHHHHHHHH
Q 021445          215 IKVFGNEHYKKQDYKMALRKYRKALRY  241 (312)
Q Consensus       215 ~k~~Gn~~~~~~~y~~A~~~Y~kal~~  241 (312)
                      +...|+.+.+.|+|++|+..|+++|.+
T Consensus         2 l~~Lg~~~~~~g~~~~Ai~~y~~aL~l   28 (36)
T PF13176_consen    2 LNNLGRIYRQQGDYEKAIEYYEQALAL   28 (36)
T ss_dssp             HHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            567899999999999999999998864

>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=95.58  E-value=0.066  Score=37.89  Aligned_cols=64  Identities=11%  Similarity=0.152  Sum_probs=41.7

Q ss_pred             hhhhhhHhhhhhHHhhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHH
Q 021445          210 NAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACK  274 (312)
Q Consensus       210 ~~~~~~k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~  274 (312)
                      +.|..+-.++..+=+.|+|++|+.+|.+||++|.........++.....+ ...+.=|.+||...
T Consensus         4 ~~Ai~~a~~Ave~D~~g~y~eA~~~Y~~aie~l~~~~~~~~~n~~~k~~i-r~K~~eYl~RAE~L   67 (76)
T cd02681           4 RDAVQFARLAVQRDQEGRYSEAVFYYKEAAQLLIYAEMAGTLNDSHLKTI-QEKSNEYLDRAQAL   67 (76)
T ss_pred             HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHH-HHHHHHHHHHHHHH
Confidence            35667788889999999999999999999998855322222232222222 34444566665543

This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.

>KOG1129 consensus TPR repeat-containing protein [General function prediction only]

Probab=95.57  E-value=0.0098  Score=53.46  Aligned_cols=48  Identities=17%  Similarity=0.248  Sum_probs=36.2

Q ss_pred             HHHHHHHHhHHHHHHHHcCCHHHHHHHHHHHHHcCC---CchHHHHHHHHH
Q 021445          260 RKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGD---DNVKALFRQGQV  307 (312)
Q Consensus       260 ~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~l~p---~~~Ka~~rrg~a  307 (312)
                      .-....+|+|+++|++.-++++-++..+.+||..-.   .-+..||+.|.+
T Consensus       354 G~~speLf~NigLCC~yaqQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~v  404 (478)
T KOG1129|consen  354 GAQSPELFCNIGLCCLYAQQIDLVLPSFQRALSTATQPGQAADVWYNLGFV  404 (478)
T ss_pred             cCCChHHHhhHHHHHHhhcchhhhHHHHHHHHhhccCcchhhhhhhcccee
Confidence            334456899999999999999999999999986532   345667776643

>KOG2471 consensus TPR repeat-containing protein [General function prediction only]

Probab=95.54  E-value=0.029  Score=53.01  Aligned_cols=97  Identities=20%  Similarity=0.149  Sum_probs=74.3

Q ss_pred             hhhhHhhhhhHHhhhcHHHHHHHHHHHHH-HhhhccccCCCCchhhhH-HHHHHHHHHhHHHHHHHHcCCHHHHHHHHHH
Q 021445          212 VDSIKVFGNEHYKKQDYKMALRKYRKALR-YLDICWEKEGIDEGKSSS-LRKTKSQIFTNSSACKLKLGDLKGALLDTEF  289 (312)
Q Consensus       212 ~~~~k~~Gn~~~~~~~y~~A~~~Y~kal~-~l~~~~~~~~~~~~~~~~-~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~  289 (312)
                      .-.+.+.|.-.|+-+.|+.++..|.+||+ .+.....  ...+....+ .......+++|.+..|+..|++..|.+++.+
T Consensus       283 cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~--g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~  360 (696)
T KOG2471|consen  283 CIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRN--GLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQK  360 (696)
T ss_pred             heeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhc--cCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHH
Confidence            33457889999999999999999999996 3332211  111111111 2344566899999999999999999999999


Q ss_pred             HHHcCCCchHHHHHHHHHhhh
Q 021445          290 AMRDGDDNVKALFRQGQVSII  310 (312)
Q Consensus       290 al~l~p~~~Ka~~rrg~a~~~  310 (312)
                      +...--.|+..|.|.|.|.++
T Consensus       361 av~vfh~nPrlWLRlAEcCim  381 (696)
T KOG2471|consen  361 AVHVFHRNPRLWLRLAECCIM  381 (696)
T ss_pred             HHHHHhcCcHHHHHHHHHHHH
Confidence            999888999999999998864

>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional

Probab=95.51  E-value=0.061  Score=55.31  Aligned_cols=46  Identities=13%  Similarity=-0.046  Sum_probs=41.9

Q ss_pred             HHHhHHHHHHHHcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHhhh
Q 021445          265 QIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQVSII  310 (312)
Q Consensus       265 ~~~~N~a~~~~kl~~~~~Ai~~~~~al~l~p~~~Ka~~rrg~a~~~  310 (312)
                      .++..+|.||-+||++++|...++++|++||+|+-++-+.|..|..
T Consensus       117 ~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae  162 (906)
T PRK14720        117 LALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEE  162 (906)
T ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHH
Confidence            4888899999999999999999999999999999999998887753

>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]

Probab=95.51  E-value=0.023  Score=50.70  Aligned_cols=84  Identities=17%  Similarity=0.105  Sum_probs=68.2

Q ss_pred             hhhhhhhhhhhHhhhhhHHhhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHcCCHHHHH
Q 021445          205 LSWWMNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGAL  284 (312)
Q Consensus       205 ~~~~~~~~~~~k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai  284 (312)
                      .....+...++ ..+....+.|+.++|...|..||.                  +.|....++.-.+.-.-.-++.-+|=
T Consensus       110 pa~~kEA~~Al-~~A~~~~~~Gk~ekA~~lfeHAla------------------laP~~p~~L~e~G~f~E~~~~iv~AD  170 (472)
T KOG3824|consen  110 PAKVKEAILAL-KAAGRSRKDGKLEKAMTLFEHALA------------------LAPTNPQILIEMGQFREMHNEIVEAD  170 (472)
T ss_pred             chhhHHHHHHH-HHHHHHHhccchHHHHHHHHHHHh------------------cCCCCHHHHHHHhHHHHhhhhhHhhh
Confidence            33333344444 456678899999999999999999                  66777778888888777778888999


Q ss_pred             HHHHHHHHcCCCchHHHHHHHHH
Q 021445          285 LDTEFAMRDGDDNVKALFRQGQV  307 (312)
Q Consensus       285 ~~~~~al~l~p~~~Ka~~rrg~a  307 (312)
                      .++.+||.++|.|.+|+..|++.
T Consensus       171 q~Y~~ALtisP~nseALvnR~RT  193 (472)
T KOG3824|consen  171 QCYVKALTISPGNSEALVNRART  193 (472)
T ss_pred             hhhheeeeeCCCchHHHhhhhcc
Confidence            99999999999999999998764

>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=95.48  E-value=0.088  Score=37.07  Aligned_cols=65  Identities=11%  Similarity=0.098  Sum_probs=42.6

Q ss_pred             hhhhhhHhhhhhHHhhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHH
Q 021445          210 NAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLK  276 (312)
Q Consensus       210 ~~~~~~k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~k  276 (312)
                      +.|..+..++-.+=++|+|.+|+.+|++|+++|.......  .++.....-...+.=|.||+...-+
T Consensus         4 ~~A~~~a~~AVe~D~~gr~~eAi~~Y~~aIe~L~q~~~~~--pD~~~k~~yr~ki~eY~~Rae~Lk~   68 (75)
T cd02682           4 EMARKYAINAVKAEKEGNAEDAITNYKKAIEVLSQIVKNY--PDSPTRLIYEQMINEYKRRIEVLEK   68 (75)
T ss_pred             HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHhC--CChHHHHHHHHHHHHHHHHHHHHHH
Confidence            4577788899999999999999999999999876532111  1111122334445556666665443

This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.

>PF12862 Apc5: Anaphase-promoting complex subunit 5

Probab=95.48  E-value=0.11  Score=38.42  Aligned_cols=64  Identities=22%  Similarity=0.222  Sum_probs=48.6

Q ss_pred             HHhhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 021445          222 HYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDG  294 (312)
Q Consensus       222 ~~~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~l~  294 (312)
                      ..+.++|.+|++...+..++.....         ..........+.+|+|..+..+|++++|+..+++|+++-
T Consensus         8 ~~~~~dy~~A~d~L~~~fD~~~~~~---------~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~A   71 (94)
T PF12862_consen    8 ALRSGDYSEALDALHRYFDYAKQSN---------NSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLA   71 (94)
T ss_pred             HHHcCCHHHHHHHHHHHHHHHhhcc---------cchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence            4567999999999998888643310         000023455678999999999999999999999999764

>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]

Probab=95.29  E-value=0.023  Score=52.65  Aligned_cols=86  Identities=17%  Similarity=0.285  Sum_probs=62.5

Q ss_pred             hhHhhhhhHHhhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHcCCHHHHHHHHHHHHH-
Q 021445          214 SIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMR-  292 (312)
Q Consensus       214 ~~k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~-  292 (312)
                      .+-+.||.+|-.|+|+.||..-+.-|++.....            -......+|+|++.||+-+++|+.|++++.+.|. 
T Consensus       197 a~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efG------------DrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~L  264 (639)
T KOG1130|consen  197 AYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFG------------DRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNL  264 (639)
T ss_pred             hhcccCceeeeeccHHHHHHHHHHHHHHHHHhh------------hHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHH
Confidence            345789999999999999998888887533210            2334456899999999999999999999998873 


Q ss_pred             ---cCCCc--hHHHHHHHHHhhhh
Q 021445          293 ---DGDDN--VKALFRQGQVSIIL  311 (312)
Q Consensus       293 ---l~p~~--~Ka~~rrg~a~~~L  311 (312)
                         +...-  +..-|-.|.+|..|
T Consensus       265 Aielg~r~vEAQscYSLgNtytll  288 (639)
T KOG1130|consen  265 AIELGNRTVEAQSCYSLGNTYTLL  288 (639)
T ss_pred             HHHhcchhHHHHHHHHhhhHHHHH
Confidence               33333  34455566666543

>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]

Probab=95.23  E-value=0.024  Score=55.85  Aligned_cols=72  Identities=13%  Similarity=0.191  Sum_probs=65.1

Q ss_pred             hhhhHhhhhhHHhhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHcCCHHHHHHHHHHHH
Q 021445          212 VDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAM  291 (312)
Q Consensus       212 ~~~~k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al  291 (312)
                      ...|...|..+.+.++++.|..+|++++.                  +.|.....++|++.+|+++++-.+|.....+||
T Consensus       519 ~~~wf~~G~~ALqlek~q~av~aF~rcvt------------------L~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAl  580 (777)
T KOG1128|consen  519 LGTWFGLGCAALQLEKEQAAVKAFHRCVT------------------LEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEAL  580 (777)
T ss_pred             hhHHHhccHHHHHHhhhHHHHHHHHHHhh------------------cCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHh
Confidence            44578999999999999999999999999                  788889999999999999999999999999999


Q ss_pred             HcCCCchHHH
Q 021445          292 RDGDDNVKAL  301 (312)
Q Consensus       292 ~l~p~~~Ka~  301 (312)
                      +.+-.+.+.|
T Consensus       581 Kcn~~~w~iW  590 (777)
T KOG1128|consen  581 KCNYQHWQIW  590 (777)
T ss_pred             hcCCCCCeee
Confidence            9887666654

>KOG2796 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.17  E-value=0.018  Score=50.40  Aligned_cols=65  Identities=23%  Similarity=0.309  Sum_probs=55.3

Q ss_pred             hHhhhhhHHhhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 021445          215 IKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDG  294 (312)
Q Consensus       215 ~k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~l~  294 (312)
                      .++.+-.+.-+++|.+|...|++.+.                  .++..+.+-+|.|+|.+-+|+..+|++..+.+++.+
T Consensus       255 ~~n~a~i~lg~nn~a~a~r~~~~i~~------------------~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~  316 (366)
T KOG2796|consen  255 LMNSAFLHLGQNNFAEAHRFFTEILR------------------MDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQD  316 (366)
T ss_pred             HhhhhhheecccchHHHHHHHhhccc------------------cCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccC
Confidence            45666666678889999999999988                  566678888999999999999999999999999999


Q ss_pred             CCc
Q 021445          295 DDN  297 (312)
Q Consensus       295 p~~  297 (312)
                      |..
T Consensus       317 P~~  319 (366)
T KOG2796|consen  317 PRH  319 (366)
T ss_pred             Ccc
Confidence            863

>PF13428 TPR_14: Tetratricopeptide repeat

Probab=95.15  E-value=0.022  Score=35.56  Aligned_cols=41  Identities=15%  Similarity=0.118  Sum_probs=33.5

Q ss_pred             hhHhhhhhHHhhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHH
Q 021445          214 SIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSA  272 (312)
Q Consensus       214 ~~k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~  272 (312)
                      .+...|..+...|++++|++.|+++|+                  ..|....++..+|.
T Consensus         3 ~~~~la~~~~~~G~~~~A~~~~~~~l~------------------~~P~~~~a~~~La~   43 (44)
T PF13428_consen    3 AWLALARAYRRLGQPDEAERLLRRALA------------------LDPDDPEAWRALAQ   43 (44)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHH------------------HCcCCHHHHHHhhh
Confidence            456788999999999999999999999                  55666667666654

>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]

Probab=95.12  E-value=0.089  Score=49.69  Aligned_cols=52  Identities=10%  Similarity=-0.023  Sum_probs=45.9

Q ss_pred             HHHHHHHHhHHHHHHHHcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHhhhh
Q 021445          260 RKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQVSIIL  311 (312)
Q Consensus       260 ~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~l~p~~~Ka~~rrg~a~~~L  311 (312)
                      .|....+..-++..+++.++..+|++.+.+++.++|...-..+..|++|+++
T Consensus       336 ~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~~  387 (484)
T COG4783         336 QPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALLKG  387 (484)
T ss_pred             CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHhc
Confidence            3455667777999999999999999999999999999999999999999764

>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A

Probab=95.11  E-value=0.085  Score=47.28  Aligned_cols=65  Identities=18%  Similarity=0.089  Sum_probs=43.1

Q ss_pred             hhhhhHHhhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHc-CCHHHHHHHHHHHHHc
Q 021445          217 VFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKL-GDLKGALLDTEFAMRD  293 (312)
Q Consensus       217 ~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl-~~~~~Ai~~~~~al~l  293 (312)
                      ..+-.++++.++.+|+.+|++|++++....            ....-..++.++|..|.+. +++++|++.+.+|+.+
T Consensus        79 ~~Aa~~~k~~~~~~Ai~~~~~A~~~y~~~G------------~~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~  144 (282)
T PF14938_consen   79 EEAANCYKKGDPDEAIECYEKAIEIYREAG------------RFSQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAEL  144 (282)
T ss_dssp             HHHHHHHHHTTHHHHHHHHHHHHHHHHHCT-------------HHHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhhCHHHHHHHHHHHHHHHHhcC------------cHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            334444555566777777777776543310            2234466889999999998 9999999999999965

>KOG4555 consensus TPR repeat-containing protein [Function unknown]

Probab=95.10  E-value=0.16  Score=39.83  Aligned_cols=75  Identities=21%  Similarity=0.125  Sum_probs=62.7

Q ss_pred             hhhhhHhhhhhHHhhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHcCCHHHHHHHHHHH
Q 021445          211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA  290 (312)
Q Consensus       211 ~~~~~k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~a  290 (312)
                      .+..+.+++..+--+|+-++|++...+|+++-..              ........|..|+..|-.+|+-+.|..|+..|
T Consensus        76 raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~--------------~trtacqa~vQRg~lyRl~g~dd~AR~DFe~A  141 (175)
T KOG4555|consen   76 RASAYNNRAQALRLQGDDEEALDDLNKALELAGD--------------QTRTACQAFVQRGLLYRLLGNDDAARADFEAA  141 (175)
T ss_pred             chHhhccHHHHHHHcCChHHHHHHHHHHHHhcCc--------------cchHHHHHHHHHHHHHHHhCchHHHHHhHHHH
Confidence            4566788888888999999999999999996433              23445778999999999999999999999999


Q ss_pred             HHcCCCchH
Q 021445          291 MRDGDDNVK  299 (312)
Q Consensus       291 l~l~p~~~K  299 (312)
                      -++-...++
T Consensus       142 A~LGS~FAr  150 (175)
T KOG4555|consen  142 AQLGSKFAR  150 (175)
T ss_pred             HHhCCHHHH
Confidence            988766554

>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking

Probab=95.06  E-value=0.15  Score=35.25  Aligned_cols=37  Identities=22%  Similarity=0.303  Sum_probs=31.2

Q ss_pred             hhhhhhhHhhhhhHHhhhcHHHHHHHHHHHHHHhhhc
Q 021445          209 MNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDIC  245 (312)
Q Consensus       209 ~~~~~~~k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~  245 (312)
                      ++.+..+..+|-.+=+.|+|++|+.+|++|+++|...
T Consensus         2 ~~~A~~~~~~Av~~D~~g~~~~A~~~Y~~ai~~l~~~   38 (69)
T PF04212_consen    2 LDKAIELIKKAVEADEAGNYEEALELYKEAIEYLMQA   38 (69)
T ss_dssp             HHHHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Confidence            3456677788888889999999999999999988664

; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....

>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala

Probab=95.03  E-value=0.12  Score=50.25  Aligned_cols=72  Identities=18%  Similarity=0.082  Sum_probs=56.3

Q ss_pred             hhhHHhhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHcCCHHHHHHHHHHHHHcCCCch
Q 021445          219 GNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNV  298 (312)
Q Consensus       219 Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~l~p~~~  298 (312)
                      ...+...|+|++|++...+....                  -.....++--+|.++++||++++|...+...|..+|+|.
T Consensus        11 ~~il~e~g~~~~AL~~L~~~~~~------------------I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~   72 (517)
T PF12569_consen   11 NSILEEAGDYEEALEHLEKNEKQ------------------ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPDNY   72 (517)
T ss_pred             HHHHHHCCCHHHHHHHHHhhhhh------------------CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcH
Confidence            33445668888888877665552                  233566788899999999999999999999999999999


Q ss_pred             HHHHHHHHHh
Q 021445          299 KALFRQGQVS  308 (312)
Q Consensus       299 Ka~~rrg~a~  308 (312)
                      .-|.....|+
T Consensus        73 ~Yy~~L~~~~   82 (517)
T PF12569_consen   73 DYYRGLEEAL   82 (517)
T ss_pred             HHHHHHHHHH
Confidence            7776666665

N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].

>PRK10747 putative protoheme IX biogenesis protein; Provisional

Probab=94.99  E-value=0.11  Score=49.13  Aligned_cols=75  Identities=11%  Similarity=0.016  Sum_probs=56.5

Q ss_pred             hhhHHhhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHH-HHHHhHHHHHHHHcCCHHHHHHHHHHHHHcCCCc
Q 021445          219 GNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTK-SQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDN  297 (312)
Q Consensus       219 Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~N~a~~~~kl~~~~~Ai~~~~~al~l~p~~  297 (312)
                      +-...+.|+++.|...|.+|.+.                  .|.. .....-.+..++..|++++|+..++++++.+|++
T Consensus       125 A~aA~~~g~~~~A~~~l~~A~~~------------------~~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~P~~  186 (398)
T PRK10747        125 AEAAQQRGDEARANQHLERAAEL------------------ADNDQLPVEITRVRIQLARNENHAARHGVDKLLEVAPRH  186 (398)
T ss_pred             HHHHHHCCCHHHHHHHHHHHHhc------------------CCcchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCC
Confidence            44446777777777777777762                  2221 1223345889999999999999999999999999


Q ss_pred             hHHHHHHHHHhhhh
Q 021445          298 VKALFRQGQVSIIL  311 (312)
Q Consensus       298 ~Ka~~rrg~a~~~L  311 (312)
                      +.++...+.+|...
T Consensus       187 ~~al~ll~~~~~~~  200 (398)
T PRK10747        187 PEVLRLAEQAYIRT  200 (398)
T ss_pred             HHHHHHHHHHHHHH
Confidence            99999998888654

>TIGR00540 hemY_coli hemY protein

Probab=94.94  E-value=0.11  Score=49.20  Aligned_cols=77  Identities=10%  Similarity=-0.003  Sum_probs=55.4

Q ss_pred             hhhhhHHhhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHH-HHHHhHHHHHHHHcCCHHHHHHHHHHHHHcCC
Q 021445          217 VFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTK-SQIFTNSSACKLKLGDLKGALLDTEFAMRDGD  295 (312)
Q Consensus       217 ~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~N~a~~~~kl~~~~~Ai~~~~~al~l~p  295 (312)
                      -.|..+.++|+++.|...|.++.+.                  .|.. ..+...++..++..+++++|+..++++++..|
T Consensus       123 laA~aa~~~g~~~~A~~~l~~a~~~------------------~p~~~l~~~~~~a~l~l~~~~~~~Al~~l~~l~~~~P  184 (409)
T TIGR00540       123 KAAEAAQQRGDEARANQHLEEAAEL------------------AGNDNILVEIARTRILLAQNELHAARHGVDKLLEMAP  184 (409)
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHh------------------CCcCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC
Confidence            3444455556666666666665542                  1222 12445568889999999999999999999999


Q ss_pred             CchHHHHHHHHHhhhh
Q 021445          296 DNVKALFRQGQVSIIL  311 (312)
Q Consensus       296 ~~~Ka~~rrg~a~~~L  311 (312)
                      +++.++...+.++..+
T Consensus       185 ~~~~~l~ll~~~~~~~  200 (409)
T TIGR00540       185 RHKEVLKLAEEAYIRS  200 (409)
T ss_pred             CCHHHHHHHHHHHHHH
Confidence            9999999999888654

This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.

>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome

Probab=94.89  E-value=0.31  Score=40.58  Aligned_cols=68  Identities=19%  Similarity=0.110  Sum_probs=57.8

Q ss_pred             hhhhHhhhhhHHhhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHcCCHHHHHHHHHHHH
Q 021445          212 VDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAM  291 (312)
Q Consensus       212 ~~~~k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al  291 (312)
                      -..+.+.|+-+.+-|++++|++.|.++.+++..               ....+.+++|+-.+.+.+++|..+....++|-
T Consensus        36 r~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~---------------~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~  100 (177)
T PF10602_consen   36 RMALEDLADHYCKIGDLEEALKAYSRARDYCTS---------------PGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAE  100 (177)
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCC---------------HHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence            445789999999999999999999999986543               34567788999999999999999999999987


Q ss_pred             HcC
Q 021445          292 RDG  294 (312)
Q Consensus       292 ~l~  294 (312)
                      .+-
T Consensus       101 ~~~  103 (177)
T PF10602_consen  101 SLI  103 (177)
T ss_pred             HHH
Confidence            554

This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.

>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]

Probab=94.87  E-value=0.11  Score=40.78  Aligned_cols=45  Identities=11%  Similarity=0.113  Sum_probs=38.3

Q ss_pred             HHHHhHHHHHHHHcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHh
Q 021445          264 SQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQVS  308 (312)
Q Consensus       264 ~~~~~N~a~~~~kl~~~~~Ai~~~~~al~l~p~~~Ka~~rrg~a~  308 (312)
                      ..+..-+|..|+++++|++++.+++..|+.+|+|..|.--+-...
T Consensus        71 Re~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa~~Lk~~ie  115 (149)
T KOG3364|consen   71 RECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQALELKETIE  115 (149)
T ss_pred             hhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHHHHHHHHHH
Confidence            446667999999999999999999999999999998876654443

>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional

Probab=94.83  E-value=0.17  Score=52.21  Aligned_cols=99  Identities=10%  Similarity=0.005  Sum_probs=69.3

Q ss_pred             hhhhhHhhhhhHHhhhcHHHHHHHHHHHHHHhhhccc----------cCCCCchhhhHHHHHHHHHHhHHH---------
Q 021445          211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWE----------KEGIDEGKSSSLRKTKSQIFTNSS---------  271 (312)
Q Consensus       211 ~~~~~k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~----------~~~~~~~~~~~~~~~~~~~~~N~a---------  271 (312)
                      .+..+.+-|-.+-.+ +.++|...|.+|+..+-....          --..++++-..+-.....+...+.         
T Consensus       149 n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~~i~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~  227 (906)
T PRK14720        149 NPEIVKKLATSYEEE-DKEKAITYLKKAIYRFIKKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLLE  227 (906)
T ss_pred             cHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhhccchhHHHHH
Confidence            466677788777777 899999999999876422110          001112222222223333344444         


Q ss_pred             ---HHHHHcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHhhh
Q 021445          272 ---ACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQVSII  310 (312)
Q Consensus       272 ---~~~~kl~~~~~Ai~~~~~al~l~p~~~Ka~~rrg~a~~~  310 (312)
                         .||-++++|++++.....+|+++|+|.+|.+..+.||..
T Consensus       228 ~l~~~y~~~~~~~~~i~iLK~iL~~~~~n~~a~~~l~~~y~~  269 (906)
T PRK14720        228 DLYEPYKALEDWDEVIYILKKILEHDNKNNKAREELIRFYKE  269 (906)
T ss_pred             HHHHHHhhhhhhhHHHHHHHHHHhcCCcchhhHHHHHHHHHH
Confidence               899999999999999999999999999999999999864

>COG4070 Predicted peptidyl-prolyl cis-trans isomerase (rotamase), cyclophilin family [Posttranslational modification, protein turnover, chaperones]

Probab=94.76  E-value=0.089  Score=48.19  Aligned_cols=113  Identities=19%  Similarity=0.289  Sum_probs=63.4

Q ss_pred             EEEEEEeCCCCchhHHhHHHHhhCCCCCCCCCCCCceecCCEEEEeecCC--eEEeCCCCCCCCCCCCcccCCCCCCCcc
Q 021445           19 RIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRVIKGF--MIQGGDISAGDGTGGESIYGLKFEDENF   96 (312)
Q Consensus        19 ~i~ieL~~~~aP~~~~nF~~l~~~~~~~~~~~~~~~~Y~g~~~~rv~~~~--~iq~G~~~~~~~~~~~~~~~~~~~~e~~   96 (312)
                      -|.||||.+.||.++..|.++..-..       ++  --...+|-+.++.  ++.-|+..          ++..+.+||.
T Consensus       377 iieIELyed~APrSv~yFRr~t~l~~-------kp--VGkL~Vhfay~d~~~vmfegn~~----------~~K~llPEN~  437 (512)
T COG4070         377 IIEIELYEDRAPRSVWYFRRSTGLKT-------KP--VGKLKVHFAYDDTYLVMFEGNAV----------LAKGLLPENT  437 (512)
T ss_pred             EEEEEecCCCCchhhHHHHhhccccc-------cc--ccceEEEEEeCCceEEEEcCChH----------HhccCCCCCC
Confidence            48999999999999999999865431       11  1124566667773  22233322          2223445555


Q ss_pred             cccCCCcceEEeecCCCCCCCceEEEec------CCC-CCCCCCCceEEEEEeChHHHHHHhc
Q 021445           97 ELKHERKGMLSMANAGPNTNGSQFFITT------TRT-SHLDGKHVVFGRVIKGMGVVRSIEH  152 (312)
Q Consensus        97 ~~~~~~~G~l~~~~~~~~~~~sqF~I~~------~~~-~~ld~~~~vfG~V~~G~~vl~~i~~  152 (312)
                      +-....+|.|+..|......| -.-+-|      +|. ..+.+ .-++|+|++|.+-|..|..
T Consensus       438 P~d~Ve~g~iGvTN~a~r~~G-mIGVRL~dsdefGPTGE~Fe~-TNiIGrIveg~e~l~~ike  498 (512)
T COG4070         438 PADTVEAGEIGVTNQAARHMG-MIGVRLEDSDEFGPTGEKFEG-TNIIGRIVEGPERLIGIKE  498 (512)
T ss_pred             chhheecccccccccchhccc-eeEEEeccccccCCCCCcccc-ceeehhhccChHHhccccc
Confidence            444445555554443211000 011112      222 23334 4578999999999988876

>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=94.67  E-value=0.21  Score=48.34  Aligned_cols=84  Identities=14%  Similarity=0.042  Sum_probs=67.6

Q ss_pred             hhhhHhhhhhHHhhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHcCCHHHHHHHHHHHH
Q 021445          212 VDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAM  291 (312)
Q Consensus       212 ~~~~k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al  291 (312)
                      -+.+.+.+..+...|+|.+|++...+|++++......++.++|+   +......+..-+|.++..+|+-++|...+...|
T Consensus       175 yel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEe---ie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i  251 (652)
T KOG2376|consen  175 YELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEE---IEEELNPIRVQLAYVLQLQGQTAEASSIYVDII  251 (652)
T ss_pred             HHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhh---HHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHH
Confidence            44578899999999999999999999988776543333333333   566677788899999999999999999999999


Q ss_pred             HcCCCch
Q 021445          292 RDGDDNV  298 (312)
Q Consensus       292 ~l~p~~~  298 (312)
                      +.+|.+.
T Consensus       252 ~~~~~D~  258 (652)
T KOG2376|consen  252 KRNPADE  258 (652)
T ss_pred             HhcCCCc
Confidence            8887654

>KOG3060 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.63  E-value=0.25  Score=43.16  Aligned_cols=96  Identities=15%  Similarity=0.079  Sum_probs=65.8

Q ss_pred             CCCCCCCCCCCCCCCCCChhhhhhhhhhhHhhhhhHHhhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHH
Q 021445          187 DGDSYPDWPADLDQTPNELSWWMNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQI  266 (312)
Q Consensus       187 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~~k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~  266 (312)
                      +.+.|+..+.|+.   .+..-..+.+..+|.+|..+       +||+.-.+=++.+                  .....+
T Consensus       105 A~e~y~~lL~ddp---t~~v~~KRKlAilka~GK~l-------~aIk~ln~YL~~F------------------~~D~EA  156 (289)
T KOG3060|consen  105 AIEYYESLLEDDP---TDTVIRKRKLAILKAQGKNL-------EAIKELNEYLDKF------------------MNDQEA  156 (289)
T ss_pred             HHHHHHHHhccCc---chhHHHHHHHHHHHHcCCcH-------HHHHHHHHHHHHh------------------cCcHHH
Confidence            3444555555543   23333334455555555444       6666555555532                  335668


Q ss_pred             HhHHHHHHHHcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHhhh
Q 021445          267 FTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQVSII  310 (312)
Q Consensus       267 ~~N~a~~~~kl~~~~~Ai~~~~~al~l~p~~~Ka~~rrg~a~~~  310 (312)
                      |.-+|..|+.+++|++|+-++++++-++|.++--+-|.|..++-
T Consensus       157 W~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt  200 (289)
T KOG3060|consen  157 WHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYT  200 (289)
T ss_pred             HHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999888888877753

>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production

Probab=94.61  E-value=0.15  Score=40.65  Aligned_cols=62  Identities=21%  Similarity=0.197  Sum_probs=51.8

Q ss_pred             hhhhHhhhhhHHhhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHcCCHHHHHHHHHHHH
Q 021445          212 VDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAM  291 (312)
Q Consensus       212 ~~~~k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al  291 (312)
                      ...+...+..+...|++.+|+..+++++.                  ++|..-.+|.-+-.||..+|++.+|++.+.+..
T Consensus        62 ~~~~~~l~~~~~~~~~~~~a~~~~~~~l~------------------~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~  123 (146)
T PF03704_consen   62 LDALERLAEALLEAGDYEEALRLLQRALA------------------LDPYDEEAYRLLMRALAAQGRRAEALRVYERYR  123 (146)
T ss_dssp             HHHHHHHHHHHHHTT-HHHHHHHHHHHHH------------------HSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhccCHHHHHHHHHHHHh------------------cCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHH
Confidence            44456777778889999999999999999                  778888899999999999999999999988875

It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.

>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=94.54  E-value=0.22  Score=35.30  Aligned_cols=62  Identities=16%  Similarity=0.155  Sum_probs=41.3

Q ss_pred             hhhhhHhhhhhHHhhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHH
Q 021445          211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACK  274 (312)
Q Consensus       211 ~~~~~k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~  274 (312)
                      .+..+..+|..+=+.|+|++|+.+|.+||++|......+ +++.- ...-.....-|.+||...
T Consensus         5 ~a~~l~~~Ave~D~~g~y~eAl~~Y~~aie~l~~~lk~e-~d~~~-k~~~r~ki~eY~~RAE~L   66 (77)
T cd02683           5 AAKEVLKRAVELDQEGRFQEALVCYQEGIDLLMQVLKGT-KDEAK-KKNLRQKISEYMDRAEAI   66 (77)
T ss_pred             HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhhC-CCHHH-HHHHHHHHHHHHHHHHHH
Confidence            566778888999999999999999999999987643222 22211 222333444566666543

This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.

>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]

Probab=94.54  E-value=0.19  Score=43.77  Aligned_cols=78  Identities=22%  Similarity=0.182  Sum_probs=65.0

Q ss_pred             hhhHhhhhhHHhhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHcCCHHHHHHHHHHHHH
Q 021445          213 DSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMR  292 (312)
Q Consensus       213 ~~~k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~  292 (312)
                      +.+-.+|-.+-+.|++++|-..|.+|++                  +.+-...+++|++..|+-.|+++.|......+-.
T Consensus       135 ~~~~~lgaaldq~Gr~~~Ar~ay~qAl~------------------L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l  196 (257)
T COG5010         135 EAWNLLGAALDQLGRFDEARRAYRQALE------------------LAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYL  196 (257)
T ss_pred             hhhhHHHHHHHHccChhHHHHHHHHHHH------------------hccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHh
Confidence            3467899999999999999999999999                  5566677899999999999999999999988887


Q ss_pred             cCCCchHHHHHHHHHh
Q 021445          293 DGDDNVKALFRQGQVS  308 (312)
Q Consensus       293 l~p~~~Ka~~rrg~a~  308 (312)
                      .-+.+....-.++.+.
T Consensus       197 ~~~ad~~v~~NLAl~~  212 (257)
T COG5010         197 SPAADSRVRQNLALVV  212 (257)
T ss_pred             CCCCchHHHHHHHHHH
Confidence            7776666665555543

>KOG4340 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.53  E-value=0.1  Score=46.62  Aligned_cols=72  Identities=13%  Similarity=-0.013  Sum_probs=56.6

Q ss_pred             hHHhhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHcCCHHHHHHHHHHHHHcCCCchHH
Q 021445          221 EHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKA  300 (312)
Q Consensus       221 ~~~~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~l~p~~~Ka  300 (312)
                      .+.+..+|..||++.+--.+                  ..|.....++-++.||+..++|..|..++++...+.|...+-
T Consensus        19 ~lI~d~ry~DaI~~l~s~~E------------------r~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qY   80 (459)
T KOG4340|consen   19 RLIRDARYADAIQLLGSELE------------------RSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQY   80 (459)
T ss_pred             HHHHHhhHHHHHHHHHHHHh------------------cCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHH
Confidence            34677778888777665555                  445556678889999999999999999999999999998877


Q ss_pred             HHHHHHHhhh
Q 021445          301 LFRQGQVSII  310 (312)
Q Consensus       301 ~~rrg~a~~~  310 (312)
                      -+..|+.++.
T Consensus        81 rlY~AQSLY~   90 (459)
T KOG4340|consen   81 RLYQAQSLYK   90 (459)
T ss_pred             HHHHHHHHHH
Confidence            6666766653

>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]

Probab=94.50  E-value=0.12  Score=52.87  Aligned_cols=78  Identities=18%  Similarity=0.163  Sum_probs=67.9

Q ss_pred             hhHhhhhhHHhhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHcCC-HHHHHHHHHHHHH
Q 021445          214 SIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGD-LKGALLDTEFAMR  292 (312)
Q Consensus       214 ~~k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~-~~~Ai~~~~~al~  292 (312)
                      .....+.+..+.++|++|++.-.++|+                  .+|....++.=++.++..++. .++|-+++-.|.+
T Consensus         4 ~aLK~Ak~al~nk~YeealEqskkvLk------------------~dpdNYnA~vFLGvAl~sl~q~le~A~ehYv~AaK   65 (1238)
T KOG1127|consen    4 TALKSAKDALRNKEYEEALEQSKKVLK------------------EDPDNYNAQVFLGVALWSLGQDLEKAAEHYVLAAK   65 (1238)
T ss_pred             hHHHHHHHHHhhccHHHHHHHHHHHHh------------------cCCCcchhhhHHHHHHHhccCCHHHHHHHHHHHHh
Confidence            345567888899999999999999999                  667777788889999999998 9999999999999


Q ss_pred             cCCCchHHHHHHHHHhh
Q 021445          293 DGDDNVKALFRQGQVSI  309 (312)
Q Consensus       293 l~p~~~Ka~~rrg~a~~  309 (312)
                      ++|++.-||--.+.-|.
T Consensus        66 ldpdnlLAWkGL~nLye   82 (1238)
T KOG1127|consen   66 LDPDNLLAWKGLGNLYE   82 (1238)
T ss_pred             cChhhhHHHHHHHHHHH
Confidence            99999999877766554

>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT

Probab=94.48  E-value=0.37  Score=37.11  Aligned_cols=69  Identities=17%  Similarity=0.129  Sum_probs=52.7

Q ss_pred             hhhhhHHhhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHcCCHHHHHHHHHHHHH
Q 021445          217 VFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMR  292 (312)
Q Consensus       217 ~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~  292 (312)
                      -....+-+.|+|++++..-.+||.|++..   -+.+++    --.+.+.+-.|||.++-.+|+.++|+..+..+-+
T Consensus        60 ~Ls~A~~~Lgry~e~L~sA~~aL~YFNRR---GEL~qd----eGklWIaaVfsra~Al~~~Gr~~eA~~~fr~agE  128 (144)
T PF12968_consen   60 GLSGALAGLGRYDECLQSADRALRYFNRR---GELHQD----EGKLWIAAVFSRAVALEGLGRKEEALKEFRMAGE  128 (144)
T ss_dssp             HHHHHHHHTT-HHHHHHHHHHHHHHHHHH-----TTST----HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred             HHHHHHHhhccHHHHHHHHHHHHHHHhhc---cccccc----cchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Confidence            34556778999999999999999999873   222222    2356678889999999999999999999998864

The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.

>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]

Probab=94.35  E-value=0.1  Score=48.51  Aligned_cols=67  Identities=18%  Similarity=0.156  Sum_probs=53.2

Q ss_pred             hhhhhHhhhhhHHhhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHcCCHHHHHHHHHHH
Q 021445          211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA  290 (312)
Q Consensus       211 ~~~~~k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~a  290 (312)
                      .+-++-.+|..++|.|++..-+..|++||+.=..              --..++.+|+.++.+|+-|++|.+|+++-..-
T Consensus        16 SCleLalEGERLck~gdcraGv~ff~aA~qvGTe--------------Dl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hD   81 (639)
T KOG1130|consen   16 SCLELALEGERLCKMGDCRAGVDFFKAALQVGTE--------------DLSTLSAIYSQLGNAYFYLKDYEKALKYHTHD   81 (639)
T ss_pred             HHHHHHHHHHHHHhccchhhhHHHHHHHHHhcch--------------HHHHHHHHHHHhcchhhhHhhHHHHHhhhhhh
Confidence            3567889999999999999999999999985211              23456778999999999999888888765554


Q ss_pred             H
Q 021445          291 M  291 (312)
Q Consensus       291 l  291 (312)
                      |
T Consensus        82 l   82 (639)
T KOG1130|consen   82 L   82 (639)
T ss_pred             H
Confidence            4

>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=94.04  E-value=0.085  Score=47.62  Aligned_cols=69  Identities=22%  Similarity=0.286  Sum_probs=60.0

Q ss_pred             hHhhhhhHHhhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 021445          215 IKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDG  294 (312)
Q Consensus       215 ~k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~l~  294 (312)
                      +-+++-..+--|+|..|+..-++|+.                  ++|....+|.--|.|++.|+++.+|+..|+..|+++
T Consensus       122 Y~NRAAa~~~l~NyRs~l~Dcs~al~------------------~~P~h~Ka~~R~Akc~~eLe~~~~a~nw~ee~~~~d  183 (390)
T KOG0551|consen  122 YTNRAAAQLYLGNYRSALNDCSAALK------------------LKPTHLKAYIRGAKCLLELERFAEAVNWCEEGLQID  183 (390)
T ss_pred             HhhHHHHHHHHHHHHHHHHHHHHHHh------------------cCcchhhhhhhhhHHHHHHHHHHHHHHHHhhhhhhh
Confidence            45677777778999999999999999                  788999999999999999999999999999999888


Q ss_pred             CCchHHH
Q 021445          295 DDNVKAL  301 (312)
Q Consensus       295 p~~~Ka~  301 (312)
                      ...-++.
T Consensus       184 ~e~K~~~  190 (390)
T KOG0551|consen  184 DEAKKAI  190 (390)
T ss_pred             HHHHHHH
Confidence            6554443

>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala

Probab=94.00  E-value=0.15  Score=49.62  Aligned_cols=49  Identities=14%  Similarity=-0.008  Sum_probs=44.8

Q ss_pred             HHHHHhHHHHHHHHcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHhhhh
Q 021445          263 KSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQVSIIL  311 (312)
Q Consensus       263 ~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~l~p~~~Ka~~rrg~a~~~L  311 (312)
                      ..-++.-+|++|..+|++++|++..++||+..|+.+..|+.+|++|-++
T Consensus       193 ~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~  241 (517)
T PF12569_consen  193 LLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHA  241 (517)
T ss_pred             HHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHC
Confidence            4557788999999999999999999999999999999999999998653

N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].

>PRK10941 hypothetical protein; Provisional

Probab=93.84  E-value=0.35  Score=43.07  Aligned_cols=76  Identities=12%  Similarity=0.145  Sum_probs=64.2

Q ss_pred             hHhhhhhHHhhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 021445          215 IKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDG  294 (312)
Q Consensus       215 ~k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~l~  294 (312)
                      +.+.-..+.++++|+.|+++-...|.                  +.|....-+.-||.+|.+|+.+..|+.|.+.-++.-
T Consensus       184 l~nLK~~~~~~~~~~~AL~~~e~ll~------------------l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~  245 (269)
T PRK10941        184 LDTLKAALMEEKQMELALRASEALLQ------------------FDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQC  245 (269)
T ss_pred             HHHHHHHHHHcCcHHHHHHHHHHHHH------------------hCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhC
Confidence            45566678899999999999999998                  555566667789999999999999999999999999


Q ss_pred             CCchHHHHHHHHHh
Q 021445          295 DDNVKALFRQGQVS  308 (312)
Q Consensus       295 p~~~Ka~~rrg~a~  308 (312)
                      |+.+-+-.-|.+..
T Consensus       246 P~dp~a~~ik~ql~  259 (269)
T PRK10941        246 PEDPISEMIRAQIH  259 (269)
T ss_pred             CCchhHHHHHHHHH
Confidence            99988877666543

>cd02684 MIT_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=93.77  E-value=0.3  Score=34.44  Aligned_cols=38  Identities=21%  Similarity=0.232  Sum_probs=32.6

Q ss_pred             hhhhhhhHhhhhhHHhhhcHHHHHHHHHHHHHHhhhcc
Q 021445          209 MNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICW  246 (312)
Q Consensus       209 ~~~~~~~k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~  246 (312)
                      ++.|..+..+|...=..|+|++|+.+|..||++|....
T Consensus         3 l~~Ai~lv~~Av~~D~~g~y~eA~~lY~~ale~~~~~~   40 (75)
T cd02684           3 LEKAIALVVQAVKKDQRGDAAAALSLYCSALQYFVPAL   40 (75)
T ss_pred             HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHH
Confidence            45677788889999999999999999999999886643

This sub-family of MIT domains is found in proteins with an n-terminal serine/threonine kinase domain. The molecular function of the MIT domain is unclear.

>cd02677 MIT_SNX15 MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=93.76  E-value=0.33  Score=34.23  Aligned_cols=62  Identities=15%  Similarity=0.183  Sum_probs=41.2

Q ss_pred             hhhhhhhHhhhhhHHhhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHH
Q 021445          209 MNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSA  272 (312)
Q Consensus       209 ~~~~~~~k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~  272 (312)
                      +..|..+..+|...=+.|+|++|+.+|..||+++......+ .++.. ...-..+..=|+.||.
T Consensus         3 l~~A~~l~~~Ave~d~~~~y~eA~~~Y~~~i~~~~~~~k~e-~~~~~-k~~ir~K~~eYl~RAE   64 (75)
T cd02677           3 LEQAAELIRLALEKEEEGDYEAAFEFYRAGVDLLLKGVQGD-SSPER-REAVKRKIAEYLKRAE   64 (75)
T ss_pred             HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhccC-CCHHH-HHHHHHHHHHHHHHHH
Confidence            34566777888888899999999999999999986643222 22222 2223334445666654

This MIT domain sub-family is found in sorting nexin 15 and related proteins. The molecular function of the MIT domain is unclear.

>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]

Probab=93.73  E-value=0.37  Score=41.95  Aligned_cols=76  Identities=12%  Similarity=0.097  Sum_probs=64.8

Q ss_pred             hHhhhhhHHhhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 021445          215 IKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDG  294 (312)
Q Consensus       215 ~k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~l~  294 (312)
                      +.+...-+.+.++|-++++.-+..|.                  ..|....+|.-||-++...=+..+|-.|+.++|+++
T Consensus       233 llNy~QC~L~~~e~yevleh~seiL~------------------~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ld  294 (329)
T KOG0545|consen  233 LLNYCQCLLKKEEYYEVLEHCSEILR------------------HHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELD  294 (329)
T ss_pred             HHhHHHHHhhHHHHHHHHHHHHHHHh------------------cCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcC
Confidence            45667777788999999999888888                  667788999999999999999999999999999999


Q ss_pred             CCchHHHHHHHHHh
Q 021445          295 DDNVKALFRQGQVS  308 (312)
Q Consensus       295 p~~~Ka~~rrg~a~  308 (312)
                      |.-+++--|--+++
T Consensus       295 pslasvVsrElr~l  308 (329)
T KOG0545|consen  295 PSLASVVSRELRLL  308 (329)
T ss_pred             hhhHHHHHHHHHHH
Confidence            98877766654443

>KOG1129 consensus TPR repeat-containing protein [General function prediction only]

Probab=93.72  E-value=0.13  Score=46.53  Aligned_cols=84  Identities=10%  Similarity=-0.034  Sum_probs=57.0

Q ss_pred             hhhhhHHhhhcHHHHHHHHHHHHHHhhhccc--------cCCCCchh-------hhHHHHHHHHHHhHHHHHHHHcCCHH
Q 021445          217 VFGNEHYKKQDYKMALRKYRKALRYLDICWE--------KEGIDEGK-------SSSLRKTKSQIFTNSSACKLKLGDLK  281 (312)
Q Consensus       217 ~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~--------~~~~~~~~-------~~~~~~~~~~~~~N~a~~~~kl~~~~  281 (312)
                      +.|.-+++.|-+.+|...++.+|........        ..-..++.       ..+..|.....++-.|..|..|++++
T Consensus       228 Q~gkCylrLgm~r~AekqlqssL~q~~~~dTfllLskvY~ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi~eam~~~~  307 (478)
T KOG1129|consen  228 QMGKCYLRLGMPRRAEKQLQSSLTQFPHPDTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDVTYLLGQARIHEAMEQQE  307 (478)
T ss_pred             HHHHHHHHhcChhhhHHHHHHHhhcCCchhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHHHHhHH
Confidence            5677777777777777777777653211000        00001111       01134677888899999999999999


Q ss_pred             HHHHHHHHHHHcCCCchHH
Q 021445          282 GALLDTEFAMRDGDDNVKA  300 (312)
Q Consensus       282 ~Ai~~~~~al~l~p~~~Ka  300 (312)
                      +|++.+..+|+++|.|+.|
T Consensus       308 ~a~~lYk~vlk~~~~nvEa  326 (478)
T KOG1129|consen  308 DALQLYKLVLKLHPINVEA  326 (478)
T ss_pred             HHHHHHHHHHhcCCcccee
Confidence            9999999999999988875

>PF10952 DUF2753: Protein of unknown function (DUF2753); InterPro: IPR020206 This entry represents a group of uncharacterised proteins

Probab=93.71  E-value=0.7  Score=35.71  Aligned_cols=82  Identities=13%  Similarity=0.022  Sum_probs=60.6

Q ss_pred             hhHhhhhhHHhhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHcCCHHHHHHHHH----H
Q 021445          214 SIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTE----F  289 (312)
Q Consensus       214 ~~k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~----~  289 (312)
                      +.-..|+..++++++-.|+-+|++|+...+...   ..++.+..++--..+...-|+|.-+-.+|+.+-.+++..    +
T Consensus         3 ~htllAd~a~~~~~~l~si~hYQqAls~se~~~---~~~~~el~dll~i~VisCHNLA~FWR~~gd~~yELkYLqlASE~   79 (140)
T PF10952_consen    3 KHTLLADQAFKEADPLRSILHYQQALSLSEEID---ESNEIELEDLLTISVISCHNLADFWRSQGDSDYELKYLQLASEK   79 (140)
T ss_pred             hHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhc---ccccccHHHHHHHHHHHHhhHHHHHHHcCChHHHHHHHHHHHHH
Confidence            455689999999999999999999999765542   223333333555566677899999999999988888764    4


Q ss_pred             HHHcCCCch
Q 021445          290 AMRDGDDNV  298 (312)
Q Consensus       290 al~l~p~~~  298 (312)
                      ++.+-|..+
T Consensus        80 VltLiPQCp   88 (140)
T PF10952_consen   80 VLTLIPQCP   88 (140)
T ss_pred             HHHhccCCC
Confidence            566666544

>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]

Probab=93.68  E-value=0.16  Score=49.59  Aligned_cols=82  Identities=15%  Similarity=0.002  Sum_probs=66.3

Q ss_pred             hhhhhHhhhhhHHhhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHcCCHHHHHHHHHHH
Q 021445          211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA  290 (312)
Q Consensus       211 ~~~~~k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~a  290 (312)
                      ..+.+--+|-.+...|+-++|..+-..++.                  .+.....||-=+|+.+-.-++|++||+++..|
T Consensus        40 HgeslAmkGL~L~~lg~~~ea~~~vr~glr------------------~d~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nA  101 (700)
T KOG1156|consen   40 HGESLAMKGLTLNCLGKKEEAYELVRLGLR------------------NDLKSHVCWHVLGLLQRSDKKYDEAIKCYRNA  101 (700)
T ss_pred             cchhHHhccchhhcccchHHHHHHHHHHhc------------------cCcccchhHHHHHHHHhhhhhHHHHHHHHHHH
Confidence            444556677777777777888777777777                  45556778999999999999999999999999


Q ss_pred             HHcCCCchHHHHHHHHHhhh
Q 021445          291 MRDGDDNVKALFRQGQVSII  310 (312)
Q Consensus       291 l~l~p~~~Ka~~rrg~a~~~  310 (312)
                      |.++|+|...|+..+.....
T Consensus       102 l~~~~dN~qilrDlslLQ~Q  121 (700)
T KOG1156|consen  102 LKIEKDNLQILRDLSLLQIQ  121 (700)
T ss_pred             HhcCCCcHHHHHHHHHHHHH
Confidence            99999999999887765444

>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]

Probab=93.65  E-value=0.28  Score=44.25  Aligned_cols=41  Identities=20%  Similarity=0.155  Sum_probs=16.5

Q ss_pred             HHHhHHHHHHHHcCCHHHHHHHHHHHHHcCCCchHHHHHHH
Q 021445          265 QIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQG  305 (312)
Q Consensus       265 ~~~~N~a~~~~kl~~~~~Ai~~~~~al~l~p~~~Ka~~rrg  305 (312)
                      ..|+-+|..++.-.+.+.|+....+|++-||+++.|=.-.|
T Consensus       181 qfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG  221 (389)
T COG2956         181 QFYCELAQQALASSDVDRARELLKKALQADKKCVRASIILG  221 (389)
T ss_pred             HHHHHHHHHHhhhhhHHHHHHHHHHHHhhCccceehhhhhh
Confidence            33444444444444444444444444444444443333333

>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]

Probab=93.62  E-value=0.11  Score=44.52  Aligned_cols=61  Identities=16%  Similarity=0.098  Sum_probs=54.7

Q ss_pred             hhHHhhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHcCCHHHHHHHHHHHHHcCCCch
Q 021445          220 NEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNV  298 (312)
Q Consensus       220 n~~~~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~l~p~~~  298 (312)
                      ..+.+.+++..|.+.|.+|++                  +-|....-|..++....|-|+++.|...+.++|++||.+.
T Consensus         3 ~~~~~~~D~~aaaely~qal~------------------lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D~   63 (287)
T COG4976           3 YMLAESGDAEAAAELYNQALE------------------LAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPEDH   63 (287)
T ss_pred             chhcccCChHHHHHHHHHHhh------------------cCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCcccc
Confidence            356788999999999999999                  6677788899999999999999999999999999999754

>cd02678 MIT_VPS4 MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=93.62  E-value=0.39  Score=33.83  Aligned_cols=37  Identities=24%  Similarity=0.308  Sum_probs=32.4

Q ss_pred             hhhhhhhHhhhhhHHhhhcHHHHHHHHHHHHHHhhhc
Q 021445          209 MNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDIC  245 (312)
Q Consensus       209 ~~~~~~~k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~  245 (312)
                      ++.+..+..+|...=..|+|++|+..|.+|++.|...
T Consensus         3 ~~~A~~l~~~Av~~D~~g~y~eA~~~Y~~aie~l~~~   39 (75)
T cd02678           3 LQKAIELVKKAIEEDNAGNYEEALRLYQHALEYFMHA   39 (75)
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Confidence            4567788889999999999999999999999987664

This sub-family of MIT domains is found in intracellular protein transport proteins of the AAA-ATPase family. The molecular function of the MIT domain is unclear.

>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A

Probab=93.60  E-value=0.13  Score=29.67  Aligned_cols=29  Identities=28%  Similarity=0.356  Sum_probs=26.2

Q ss_pred             hhhHhhhhhHHhhhcHHHHHHHHHHHHHH
Q 021445          213 DSIKVFGNEHYKKQDYKMALRKYRKALRY  241 (312)
Q Consensus       213 ~~~k~~Gn~~~~~~~y~~A~~~Y~kal~~  241 (312)
                      +.+...|..+.+.|++++|+..|++++++
T Consensus         2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~   30 (34)
T PF13181_consen    2 EAYYNLGKIYEQLGDYEEALEYFEKALEL   30 (34)
T ss_dssp             HHHHHHHHHHHHTTSHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence            45778899999999999999999999993

...

>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]

Probab=93.57  E-value=0.6  Score=42.22  Aligned_cols=30  Identities=7%  Similarity=0.088  Sum_probs=18.2

Q ss_pred             hhhhhHhhhhhHHhhhcHHHHHHHHHHHHH
Q 021445          211 AVDSIKVFGNEHYKKQDYKMALRKYRKALR  240 (312)
Q Consensus       211 ~~~~~k~~Gn~~~~~~~y~~A~~~Y~kal~  240 (312)
                      ....+.+.|..++..|-|+.|-..|..-++
T Consensus       106 r~lAl~qL~~Dym~aGl~DRAE~~f~~L~d  135 (389)
T COG2956         106 RLLALQQLGRDYMAAGLLDRAEDIFNQLVD  135 (389)
T ss_pred             HHHHHHHHHHHHHHhhhhhHHHHHHHHHhc
Confidence            344456667777777777766666654443

>PRK10941 hypothetical protein; Provisional

Probab=93.46  E-value=0.32  Score=43.28  Aligned_cols=53  Identities=11%  Similarity=0.082  Sum_probs=47.7

Q ss_pred             HHHHHHHHhHHHHHHHHcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHhhhhC
Q 021445          260 RKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQVSIILL  312 (312)
Q Consensus       260 ~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~l~p~~~Ka~~rrg~a~~~L~  312 (312)
                      .......+.|+=.+|++.++|+.|+.+++.+|.++|+++--+--||.+|..|.
T Consensus       177 ~~il~Rml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~  229 (269)
T PRK10941        177 IEVIRKLLDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLD  229 (269)
T ss_pred             HHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Confidence            44566788999999999999999999999999999999988888999998874

>KOG3785 consensus Uncharacterized conserved protein [Function unknown]

Probab=93.39  E-value=0.29  Score=44.80  Aligned_cols=74  Identities=19%  Similarity=0.252  Sum_probs=52.3

Q ss_pred             hhHHhhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHcCCHHHHHHHHHHHHHcCCCchH
Q 021445          220 NEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVK  299 (312)
Q Consensus       220 n~~~~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~l~p~~~K  299 (312)
                      ..+..+.+|..|+...+-.+.          .++|++       ..+-+=+|.|++.||+|++|+..++.+.+.+..+.+
T Consensus        30 edfls~rDytGAislLefk~~----------~~~EEE-------~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~e   92 (557)
T KOG3785|consen   30 EDFLSNRDYTGAISLLEFKLN----------LDREEE-------DSLQLWIAHCYFHLGDYEEALNVYTFLMNKDDAPAE   92 (557)
T ss_pred             HHHHhcccchhHHHHHHHhhc----------cchhhh-------HHHHHHHHHHHHhhccHHHHHHHHHHHhccCCCCcc
Confidence            455666788888776655553          222222       223334788999999999999999999988877888


Q ss_pred             HHHHHHHHhhh
Q 021445          300 ALFRQGQVSII  310 (312)
Q Consensus       300 a~~rrg~a~~~  310 (312)
                      .+...|.|+.-
T Consensus        93 l~vnLAcc~Fy  103 (557)
T KOG3785|consen   93 LGVNLACCKFY  103 (557)
T ss_pred             cchhHHHHHHH
Confidence            88887777654

>PRK11906 transcriptional regulator; Provisional

Probab=93.33  E-value=0.25  Score=46.79  Aligned_cols=51  Identities=14%  Similarity=0.057  Sum_probs=46.8

Q ss_pred             HHHHHHHHHhHHHHHHHHcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHhh
Q 021445          259 LRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQVSI  309 (312)
Q Consensus       259 ~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~l~p~~~Ka~~rrg~a~~  309 (312)
                      +++....++.-+|.++.-.++++.|+..+++|+.++|+.+.+||.+|..+.
T Consensus       333 ld~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~  383 (458)
T PRK11906        333 ITTVDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHF  383 (458)
T ss_pred             cCCCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHH
Confidence            677788899999999999999999999999999999999999999998654

>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []

Probab=93.30  E-value=0.74  Score=41.15  Aligned_cols=97  Identities=11%  Similarity=0.028  Sum_probs=70.3

Q ss_pred             CChhhhhhhhhhhHhhhhhHHhhh-cHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHcCCHH
Q 021445          203 NELSWWMNAVDSIKVFGNEHYKKQ-DYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLK  281 (312)
Q Consensus       203 ~~~~~~~~~~~~~k~~Gn~~~~~~-~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~  281 (312)
                      .++......+..+.+-|..+++++ +|++|+...++|+++++...    ..........+++..++.-++.+|+..+.++
T Consensus        26 ~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~----~~~~~~~~~~elr~~iL~~La~~~l~~~~~~  101 (278)
T PF08631_consen   26 LDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPG----KMDKLSPDGSELRLSILRLLANAYLEWDTYE  101 (278)
T ss_pred             CCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhh----hccccCCcHHHHHHHHHHHHHHHHHcCCChH
Confidence            345556678889999999999999 99999999999999986631    1112233366788999999999999999876


Q ss_pred             HHHHHHHHHHHc----CCCchHHHHHH
Q 021445          282 GALLDTEFAMRD----GDDNVKALFRQ  304 (312)
Q Consensus       282 ~Ai~~~~~al~l----~p~~~Ka~~rr  304 (312)
                      ...+ |..+++.    -|+.+-.++-+
T Consensus       102 ~~~k-a~~~l~~l~~e~~~~~~~~~L~  127 (278)
T PF08631_consen  102 SVEK-ALNALRLLESEYGNKPEVFLLK  127 (278)
T ss_pred             HHHH-HHHHHHHHHHhCCCCcHHHHHH
Confidence            5544 5555533    25544444333

It is also involved in sporulation [].

>PF13512 TPR_18: Tetratricopeptide repeat

Probab=93.29  E-value=0.18  Score=40.14  Aligned_cols=70  Identities=16%  Similarity=0.165  Sum_probs=57.1

Q ss_pred             hHhhhhhHHhhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHcCC---------------
Q 021445          215 IKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGD---------------  279 (312)
Q Consensus       215 ~k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~---------------  279 (312)
                      ....|-.+|++++|.+|+..|.+-|++-..               .|.-.-++.-+|++++++..               
T Consensus        50 qL~l~yayy~~~~y~~A~a~~~rFirLhP~---------------hp~vdYa~Y~~gL~~~~~~~~~~~~~~~~drD~~~  114 (142)
T PF13512_consen   50 QLDLAYAYYKQGDYEEAIAAYDRFIRLHPT---------------HPNVDYAYYMRGLSYYEQDEGSLQSFFRSDRDPTP  114 (142)
T ss_pred             HHHHHHHHHHccCHHHHHHHHHHHHHhCCC---------------CCCccHHHHHHHHHHHHHhhhHHhhhcccccCcHH
Confidence            467899999999999999999999994211               12223477889999999887               


Q ss_pred             HHHHHHHHHHHHHcCCCchH
Q 021445          280 LKGALLDTEFAMRDGDDNVK  299 (312)
Q Consensus       280 ~~~Ai~~~~~al~l~p~~~K  299 (312)
                      ..+|+.++.++++.-|++.-
T Consensus       115 ~~~A~~~f~~lv~~yP~S~y  134 (142)
T PF13512_consen  115 ARQAFRDFEQLVRRYPNSEY  134 (142)
T ss_pred             HHHHHHHHHHHHHHCcCChh
Confidence            89999999999999998763

>cd02656 MIT MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=93.21  E-value=0.42  Score=33.54  Aligned_cols=38  Identities=21%  Similarity=0.315  Sum_probs=31.6

Q ss_pred             hhhhhhhHhhhhhHHhhhcHHHHHHHHHHHHHHhhhcc
Q 021445          209 MNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICW  246 (312)
Q Consensus       209 ~~~~~~~k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~  246 (312)
                      ++.+..+..+|...=+.|+|++|+..|..|++.|....
T Consensus         3 ~~~a~~l~~~Av~~D~~g~~~~Al~~Y~~a~e~l~~~~   40 (75)
T cd02656           3 LQQAKELIKQAVKEDEDGNYEEALELYKEALDYLLQAL   40 (75)
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHh
Confidence            34566677788888889999999999999999887643

The MIT domain is found in sorting nexins, the nuclear thiol protease PalBH, the AAA protein spastin and archaebacterial proteins with similar domain architecture, vacuolar sorting proteins and others. The molecular function of the MIT domain is unclear.

>PRK11906 transcriptional regulator; Provisional

Probab=93.09  E-value=0.25  Score=46.74  Aligned_cols=71  Identities=8%  Similarity=0.043  Sum_probs=59.3

Q ss_pred             HhhhhhHHhhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHcCCHHHHHHHHHHHHHcCC
Q 021445          216 KVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGD  295 (312)
Q Consensus       216 k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~l~p  295 (312)
                      --.|..+.-.++++.|+..+.+|+.                  ++|..+.+|.-+|..+.--|+.++|++..++|++++|
T Consensus       342 ~~~g~~~~~~~~~~~a~~~f~rA~~------------------L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP  403 (458)
T PRK11906        342 AIMGLITGLSGQAKVSHILFEQAKI------------------HSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEP  403 (458)
T ss_pred             HHHHHHHHhhcchhhHHHHHHHHhh------------------cCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCc
Confidence            3445555566678888888888888                  7888999999999999999999999999999999999


Q ss_pred             CchHHHHHH
Q 021445          296 DNVKALFRQ  304 (312)
Q Consensus       296 ~~~Ka~~rr  304 (312)
                      ...+|-.-+
T Consensus       404 ~~~~~~~~~  412 (458)
T PRK11906        404 RRRKAVVIK  412 (458)
T ss_pred             hhhHHHHHH
Confidence            887765444

>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]

Probab=93.05  E-value=0.42  Score=39.92  Aligned_cols=67  Identities=13%  Similarity=0.144  Sum_probs=54.3

Q ss_pred             hhhHhhhhhHHhhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHcCCHHHHHHHHHHHHH
Q 021445          213 DSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMR  292 (312)
Q Consensus       213 ~~~k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~  292 (312)
                      +.....||.+...|+|.+|...|.+++.=+                 -.....+++.+|.+.+.++++.+|....+++.+
T Consensus        90 qnr~rLa~al~elGr~~EA~~hy~qalsG~-----------------fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e  152 (251)
T COG4700          90 QNRYRLANALAELGRYHEAVPHYQQALSGI-----------------FAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLME  152 (251)
T ss_pred             HHHHHHHHHHHHhhhhhhhHHHHHHHhccc-----------------cCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhh
Confidence            334678999999999999999999999731                 122355778899999999999999999999888


Q ss_pred             cCCC
Q 021445          293 DGDD  296 (312)
Q Consensus       293 l~p~  296 (312)
                      .+|.
T Consensus       153 ~~pa  156 (251)
T COG4700         153 YNPA  156 (251)
T ss_pred             cCCc
Confidence            8763

>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=92.80  E-value=0.53  Score=45.69  Aligned_cols=42  Identities=24%  Similarity=0.161  Sum_probs=31.0

Q ss_pred             hHHHHHHHHcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHhhhhC
Q 021445          268 TNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQVSIILL  312 (312)
Q Consensus       268 ~N~a~~~~kl~~~~~Ai~~~~~al~l~p~~~Ka~~rrg~a~~~L~  312 (312)
                      .-.|.|++++++.++|+.+.+   .+++...+.+.-+|+.++.|+
T Consensus        83 fEKAYc~Yrlnk~Dealk~~~---~~~~~~~~ll~L~AQvlYrl~  124 (652)
T KOG2376|consen   83 FEKAYCEYRLNKLDEALKTLK---GLDRLDDKLLELRAQVLYRLE  124 (652)
T ss_pred             HHHHHHHHHcccHHHHHHHHh---cccccchHHHHHHHHHHHHHh
Confidence            567788888888888888777   556666777777777776653

>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=92.80  E-value=0.49  Score=41.65  Aligned_cols=77  Identities=12%  Similarity=0.122  Sum_probs=62.5

Q ss_pred             hhHhhhhhHHhhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHcCCHHHHHHHHHHHHHc
Q 021445          214 SIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRD  293 (312)
Q Consensus       214 ~~k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~l  293 (312)
                      ...=.|..+|.+|+|.+|...|..+++-....               +.-...++-+|.|..++++-++|...+.++++-
T Consensus       180 A~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s---------------~KApdallKlg~~~~~l~~~d~A~atl~qv~k~  244 (262)
T COG1729         180 AYYWLGESLYAQGDYEDAAYIFARVVKDYPKS---------------PKAPDALLKLGVSLGRLGNTDEACATLQQVIKR  244 (262)
T ss_pred             hHHHHHHHHHhcccchHHHHHHHHHHHhCCCC---------------CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence            34557888999999999999999999833221               223457889999999999999999999999999


Q ss_pred             CCCchHHHHHHH
Q 021445          294 GDDNVKALFRQG  305 (312)
Q Consensus       294 ~p~~~Ka~~rrg  305 (312)
                      -|....|-.-+.
T Consensus       245 YP~t~aA~~Ak~  256 (262)
T COG1729         245 YPGTDAAKLAKV  256 (262)
T ss_pred             CCCCHHHHHHHH
Confidence            999887765543

>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]

Probab=92.76  E-value=0.53  Score=46.96  Aligned_cols=81  Identities=11%  Similarity=0.004  Sum_probs=67.4

Q ss_pred             hhhHhhhhhHHhhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHcCCHHHHHHHHHHHHH
Q 021445          213 DSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMR  292 (312)
Q Consensus       213 ~~~k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~  292 (312)
                      ..|...+..+.+.+.-++|..|..+|-.                  +.++.+..|.-+|.++...+++.+|.+.+..|+.
T Consensus       651 ~lwllaa~~~~~~~~~~~a~~CL~Ea~~------------------~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~  712 (799)
T KOG4162|consen  651 KLWLLAADLFLLSGNDDEARSCLLEASK------------------IDPLSASVYYLRGLLLEVKGQLEEAKEAFLVALA  712 (799)
T ss_pred             HHHHHHHHHHHhcCCchHHHHHHHHHHh------------------cchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHh
Confidence            3344555555666666777777777777                  6788899999999999999999999999999999


Q ss_pred             cCCCchHHHHHHHHHhhhh
Q 021445          293 DGDDNVKALFRQGQVSIIL  311 (312)
Q Consensus       293 l~p~~~Ka~~rrg~a~~~L  311 (312)
                      +||+++.+..-.|.+|..+
T Consensus       713 ldP~hv~s~~Ala~~lle~  731 (799)
T KOG4162|consen  713 LDPDHVPSMTALAELLLEL  731 (799)
T ss_pred             cCCCCcHHHHHHHHHHHHh
Confidence            9999999999999888653

>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=92.67  E-value=0.63  Score=32.80  Aligned_cols=36  Identities=11%  Similarity=0.080  Sum_probs=30.9

Q ss_pred             hhhhhhhHhhhhhHHhhhcHHHHHHHHHHHHHHhhh
Q 021445          209 MNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDI  244 (312)
Q Consensus       209 ~~~~~~~k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~  244 (312)
                      ++.+..+..+|...=..|+|++|++.|..||++|..
T Consensus         3 l~kai~Lv~~A~~eD~~gny~eA~~lY~~ale~~~~   38 (75)
T cd02680           3 LERAHFLVTQAFDEDEKGNAEEAIELYTEAVELCIN   38 (75)
T ss_pred             HHHHHHHHHHHHHhhHhhhHHHHHHHHHHHHHHHHH
Confidence            346667788888888999999999999999998765

This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.

>COG0457 NrfG FOG: TPR repeat [General function prediction only]

Probab=92.63  E-value=0.87  Score=36.92  Aligned_cols=75  Identities=27%  Similarity=0.278  Sum_probs=47.8

Q ss_pred             hhhhhHHhhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHH-HHHHHhHHHHHHHHcCCHHHHHHHHHHHHHcCC
Q 021445          217 VFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKT-KSQIFTNSSACKLKLGDLKGALLDTEFAMRDGD  295 (312)
Q Consensus       217 ~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~l~p  295 (312)
                      ..+..+...++++.|+..+.+++..                  .+. ....+.+++.++...+++.+|+.....++...|
T Consensus       172 ~~~~~~~~~~~~~~a~~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~  233 (291)
T COG0457         172 ALGALLEALGRYEEALELLEKALKL------------------NPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDP  233 (291)
T ss_pred             HhhhHHHHhcCHHHHHHHHHHHHhh------------------CcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCc
Confidence            3333355555666666666666652                  222 355677777777777788888888888887777


Q ss_pred             CchHHHHHHHHHhh
Q 021445          296 DNVKALFRQGQVSI  309 (312)
Q Consensus       296 ~~~Ka~~rrg~a~~  309 (312)
                      .....++..+..+.
T Consensus       234 ~~~~~~~~~~~~~~  247 (291)
T COG0457         234 DNAEALYNLALLLL  247 (291)
T ss_pred             ccHHHHhhHHHHHH
Confidence            76666666655554

>smart00745 MIT Microtubule Interacting and Trafficking molecule domain

Probab=92.60  E-value=0.82  Score=32.16  Aligned_cols=38  Identities=24%  Similarity=0.286  Sum_probs=31.7

Q ss_pred             hhhhhhhHhhhhhHHhhhcHHHHHHHHHHHHHHhhhcc
Q 021445          209 MNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICW  246 (312)
Q Consensus       209 ~~~~~~~k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~  246 (312)
                      ++.|..+..+|..+=+.|+|++|+.+|.+|++.|....
T Consensus         5 ~~~A~~li~~Av~~d~~g~~~eAl~~Y~~a~e~l~~~~   42 (77)
T smart00745        5 LSKAKELISKALKADEAGDYEEALELYKKAIEYLLEGI   42 (77)
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHh
Confidence            34566777888888889999999999999999887643

>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=92.36  E-value=0.34  Score=45.15  Aligned_cols=81  Identities=10%  Similarity=0.023  Sum_probs=66.1

Q ss_pred             hhhhhHhhhhhHHhhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHcCCHHHHHHHHHHH
Q 021445          211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA  290 (312)
Q Consensus       211 ~~~~~k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~a  290 (312)
                      .+..|.-.|..+|.+++|..|+..-.|+|+                  +++..+..|.=.+..++.++++++|+..+..|
T Consensus       299 ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~------------------~~~r~~~alilKG~lL~~~~R~~~A~IaFR~A  360 (564)
T KOG1174|consen  299 TASHWFVHAQLLYDEKKFERALNFVEKCID------------------SEPRNHEALILKGRLLIALERHTQAVIAFRTA  360 (564)
T ss_pred             chhhhhhhhhhhhhhhhHHHHHHHHHHHhc------------------cCcccchHHHhccHHHHhccchHHHHHHHHHH
Confidence            345566777888888899999988889988                  66777888888999999999999999999999


Q ss_pred             HHcCCCchHHHHHHHHHhh
Q 021445          291 MRDGDDNVKALFRQGQVSI  309 (312)
Q Consensus       291 l~l~p~~~Ka~~rrg~a~~  309 (312)
                      ..+.|.....|--.-.+|+
T Consensus       361 q~Lap~rL~~Y~GL~hsYL  379 (564)
T KOG1174|consen  361 QMLAPYRLEIYRGLFHSYL  379 (564)
T ss_pred             HhcchhhHHHHHHHHHHHH
Confidence            9999987776654444443

>PRK10153 DNA-binding transcriptional activator CadC; Provisional

Probab=91.93  E-value=0.5  Score=46.18  Aligned_cols=46  Identities=15%  Similarity=0.048  Sum_probs=40.6

Q ss_pred             HHHHhHHHHHHHHcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHhhh
Q 021445          264 SQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQVSII  310 (312)
Q Consensus       264 ~~~~~N~a~~~~kl~~~~~Ai~~~~~al~l~p~~~Ka~~rrg~a~~~  310 (312)
                      ..+|.-+|..++..|++++|...+++|+.++| ++.+|..+|+++..
T Consensus       420 ~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~  465 (517)
T PRK10153        420 PRIYEILAVQALVKGKTDEAYQAINKAIDLEM-SWLNYVLLGKVYEL  465 (517)
T ss_pred             hHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHH
Confidence            35677788889999999999999999999999 57899999998764

>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=91.74  E-value=0.29  Score=29.61  Aligned_cols=30  Identities=17%  Similarity=0.174  Sum_probs=26.9

Q ss_pred             HHHhHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 021445          265 QIFTNSSACKLKLGDLKGALLDTEFAMRDG  294 (312)
Q Consensus       265 ~~~~N~a~~~~kl~~~~~Ai~~~~~al~l~  294 (312)
                      .+|.-+|.+.+..++|.+|++|+.++|++.
T Consensus         2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i~   31 (38)
T PF10516_consen    2 DVYDLLGEISLENENFEQAIEDYEKALEIQ   31 (38)
T ss_pred             cHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence            367889999999999999999999999875

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].

>PF12903 DUF3830: Protein of unknown function (DUF3830); InterPro: IPR024532 This is a family of bacterial and archaeal proteins

Probab=91.69  E-value=0.81  Score=36.60  Aligned_cols=109  Identities=17%  Similarity=0.129  Sum_probs=56.1

Q ss_pred             eEEEEEEeCCCCchhHHhHHHHhhCCCCCCCCCCCCceecCCEEEEeecCC--eEEeCCCCCCCCCCCCcccCCCCCCCc
Q 021445           18 GRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRVIKGF--MIQGGDISAGDGTGGESIYGLKFEDEN   95 (312)
Q Consensus        18 G~i~ieL~~~~aP~~~~nF~~l~~~~~~~~~~~~~~~~Y~g~~~~rv~~~~--~iq~G~~~~~~~~~~~~~~~~~~~~e~   95 (312)
                      -.++.+|..|.||+||+.|.+.-=              |.+..+|-...+.  ++.-+++..           .....||
T Consensus         8 ~~~~A~l~~d~AP~Tcaa~~~~LP--------------~~~~~~HarwSG~ei~~~l~~~~~-----------~~~~~EN   62 (147)
T PF12903_consen    8 VSFTARLLDDKAPKTCAAFWEALP--------------LKGKVIHARWSGEEIWIPLPDFDP-----------FEPGREN   62 (147)
T ss_dssp             EEEEEEE-TTTSHHHHHHHHHH----------------EEEE-EE-SSSSSEEEEEEE--SS-----------S---S-S
T ss_pred             eEEEEEEcccCChHHHHHHHHhCC--------------CCCcEEEEEEECcEEEEECCCcCc-----------CCCCCCc
Confidence            468999999999999999999851              6667777666553  555555320           0122344


Q ss_pred             ccccCCCcceEEee---cCCCC--CC-CceEEEecCCCC-CCCCC-----CceEEEEEeChHHHHHHhc
Q 021445           96 FELKHERKGMLSMA---NAGPN--TN-GSQFFITTTRTS-HLDGK-----HVVFGRVIKGMGVVRSIEH  152 (312)
Q Consensus        96 ~~~~~~~~G~l~~~---~~~~~--~~-~sqF~I~~~~~~-~ld~~-----~~vfG~V~~G~~vl~~i~~  152 (312)
                       ...+-.+|-|.+.   .....  .. -+..-|..+... .+.++     -.+|++|++|++-+.++-+
T Consensus        63 -~T~~P~pGdi~~~y~~~~~~~~~pg~~~e~~i~yg~g~~~f~~~~G~l~GN~FatI~egle~la~~~~  130 (147)
T PF12903_consen   63 -HTVTPIPGDILLYYEPGSAWGGNPGGISETEIFYGYGNLLFASKMGWLPGNHFATITEGLEELAEACR  130 (147)
T ss_dssp             -EESS--TTEEEEE-----------E-EEEEEEE-SSS---EETTTEE--EEEEEEEEESHHHHHHHHH
T ss_pred             -CcccCCCCcEEEEecCCccccCCCcceEEEEEEEeeCceEecCCccccceeEEEEEcCCHHHHHHHHH
Confidence             2334456877766   11111  11 134444443322 12111     3689999999997766543

The structure of one of family members, A0JVT3 from SWISSPROT, has been characterised and shown to contain a cyclophilin-like fold.; PDB: 3KOP_B.

>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases

Probab=91.54  E-value=1.5  Score=40.10  Aligned_cols=97  Identities=15%  Similarity=0.067  Sum_probs=66.6

Q ss_pred             hHhhhhhHHhhhcHHHHHHHHHHHHH-Hhhhcccc--------------CCCC-chhhhHHHHHHHHHHhHHHHHHHHc-
Q 021445          215 IKVFGNEHYKKQDYKMALRKYRKALR-YLDICWEK--------------EGID-EGKSSSLRKTKSQIFTNSSACKLKL-  277 (312)
Q Consensus       215 ~k~~Gn~~~~~~~y~~A~~~Y~kal~-~l~~~~~~--------------~~~~-~~~~~~~~~~~~~~~~N~a~~~~kl-  277 (312)
                      ..+.++.+...|+-.+|+......+. .+......              .... .............+++-+|.-...+ 
T Consensus       187 ~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~  266 (352)
T PF02259_consen  187 FLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSISNAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDELY  266 (352)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccccccHHHHhhccccccccccccchhhhhHHHHHHHHHHHHHHHHhhc
Confidence            45666667777777888888777776 33321000              0000 0012223455667788788877778 


Q ss_pred             -----CCHHHHHHHHHHHHHcCCCchHHHHHHHHHhhhh
Q 021445          278 -----GDLKGALLDTEFAMRDGDDNVKALFRQGQVSIIL  311 (312)
Q Consensus       278 -----~~~~~Ai~~~~~al~l~p~~~Ka~~rrg~a~~~L  311 (312)
                           +.+++++..+.+|++++|++.|+|+..|..+..+
T Consensus       267 ~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~~~~~  305 (352)
T PF02259_consen  267 SKLSSESSDEILKYYKEATKLDPSWEKAWHSWALFNDKL  305 (352)
T ss_pred             cccccccHHHHHHHHHHHHHhChhHHHHHHHHHHHHHHH
Confidence                 8899999999999999999999999999887654

Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding

>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]

Probab=91.11  E-value=0.39  Score=49.31  Aligned_cols=76  Identities=13%  Similarity=0.040  Sum_probs=68.0

Q ss_pred             hHhhhhhHHhhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 021445          215 IKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDG  294 (312)
Q Consensus       215 ~k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~l~  294 (312)
                      |..+|-.+.+.+++..|+..++-|++                  .+|....++.-++.+|..-|+|..|++.+++|..++
T Consensus       565 W~~rG~yyLea~n~h~aV~~fQsALR------------------~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~Lr  626 (1238)
T KOG1127|consen  565 WVQRGPYYLEAHNLHGAVCEFQSALR------------------TDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLLR  626 (1238)
T ss_pred             hhhccccccCccchhhHHHHHHHHhc------------------CCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhcC
Confidence            45588888899999999999999999                  678888999999999999999999999999999999


Q ss_pred             CCchHHHHHHHHHh
Q 021445          295 DDNVKALFRQGQVS  308 (312)
Q Consensus       295 p~~~Ka~~rrg~a~  308 (312)
                      |.+.-+-|..|...
T Consensus       627 P~s~y~~fk~A~~e  640 (1238)
T KOG1127|consen  627 PLSKYGRFKEAVME  640 (1238)
T ss_pred             cHhHHHHHHHHHHH
Confidence            99888888776543

>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A

Probab=90.90  E-value=0.41  Score=28.71  Aligned_cols=33  Identities=18%  Similarity=0.231  Sum_probs=26.8

Q ss_pred             hhhhHhhhhhHHhhhcHHHHHHHHHHHHHHhhh
Q 021445          212 VDSIKVFGNEHYKKQDYKMALRKYRKALRYLDI  244 (312)
Q Consensus       212 ~~~~k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~  244 (312)
                      +..+.+.|..++..|+|++|...|.+++.+...
T Consensus         2 a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~   34 (42)
T PF13374_consen    2 ASALNNLANAYRAQGRYEEALELLEEALEIRER   34 (42)
T ss_dssp             HHHHHHHHHHHHHCT-HHHHHHHHHHHHHHH--
T ss_pred             HHHHHHHHHHHHhhhhcchhhHHHHHHHHHHHH
Confidence            456778999999999999999999999996543

>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]

Probab=90.83  E-value=0.89  Score=40.60  Aligned_cols=52  Identities=19%  Similarity=0.165  Sum_probs=46.5

Q ss_pred             HHHHHHHHHhHHHHHHHHcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHhhh
Q 021445          259 LRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQVSII  310 (312)
Q Consensus       259 ~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~l~p~~~Ka~~rrg~a~~~  310 (312)
                      .+|....-|.=+|.+|+.++++..|+..+.+|+++.|+|+..+.-.|.+++.
T Consensus       151 ~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~  202 (287)
T COG4235         151 QNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYY  202 (287)
T ss_pred             hCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence            4566667788899999999999999999999999999999999988888864

>COG0457 NrfG FOG: TPR repeat [General function prediction only]

Probab=90.81  E-value=1.3  Score=35.86  Aligned_cols=75  Identities=29%  Similarity=0.305  Sum_probs=50.1

Q ss_pred             hHHhhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHcCCHHHHHHHHHHHHHcCCC-chH
Q 021445          221 EHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDD-NVK  299 (312)
Q Consensus       221 ~~~~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~l~p~-~~K  299 (312)
                      .++..++++.|+..|.+++. +...              .......+.+++..+...+++++|+....+++...+. ...
T Consensus       139 ~~~~~~~~~~a~~~~~~~~~-~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~  203 (291)
T COG0457         139 ALYELGDYEEALELYEKALE-LDPE--------------LNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAE  203 (291)
T ss_pred             HHHHcCCHHHHHHHHHHHHh-cCCC--------------ccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchH
Confidence            56677777777777777755 2110              0123444555555577788888888888888888887 577


Q ss_pred             HHHHHHHHhhh
Q 021445          300 ALFRQGQVSII  310 (312)
Q Consensus       300 a~~rrg~a~~~  310 (312)
                      ++...+.++..
T Consensus       204 ~~~~~~~~~~~  214 (291)
T COG0457         204 ALLNLGLLYLK  214 (291)
T ss_pred             HHHHhhHHHHH
Confidence            77777766653

>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]

Probab=90.77  E-value=0.2  Score=42.75  Aligned_cols=70  Identities=16%  Similarity=0.096  Sum_probs=61.9

Q ss_pred             hhhhhHhhhhhHHhhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHcCCHHHHHHHHHHH
Q 021445          211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA  290 (312)
Q Consensus       211 ~~~~~k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~a  290 (312)
                      .+..+.=.|--+...|+|+.|.+.|.-.++                  ++|..--+++||+..++--|+|.-|.++..+-
T Consensus        98 m~~vfNyLG~Yl~~a~~fdaa~eaFds~~E------------------LDp~y~Ya~lNRgi~~YY~gR~~LAq~d~~~f  159 (297)
T COG4785          98 MPEVFNYLGIYLTQAGNFDAAYEAFDSVLE------------------LDPTYNYAHLNRGIALYYGGRYKLAQDDLLAF  159 (297)
T ss_pred             cHHHHHHHHHHHHhcccchHHHHHhhhHhc------------------cCCcchHHHhccceeeeecCchHhhHHHHHHH
Confidence            344566678888899999999999999999                  77888889999999999999999999999999


Q ss_pred             HHcCCCch
Q 021445          291 MRDGDDNV  298 (312)
Q Consensus       291 l~l~p~~~  298 (312)
                      -+-||+++
T Consensus       160 YQ~D~~DP  167 (297)
T COG4785         160 YQDDPNDP  167 (297)
T ss_pred             HhcCCCCh
Confidence            88888766

>PRK10747 putative protoheme IX biogenesis protein; Provisional

Probab=90.45  E-value=0.82  Score=43.11  Aligned_cols=95  Identities=9%  Similarity=0.006  Sum_probs=67.1

Q ss_pred             hhHhhhhhHHhhhcHHHHHHHHHHHHHHhhhccc-------cCCCCchh-------hhHHHHHHHHHHhHHHHHHHHcCC
Q 021445          214 SIKVFGNEHYKKQDYKMALRKYRKALRYLDICWE-------KEGIDEGK-------SSSLRKTKSQIFTNSSACKLKLGD  279 (312)
Q Consensus       214 ~~k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~-------~~~~~~~~-------~~~~~~~~~~~~~N~a~~~~kl~~  279 (312)
                      ....-+..+...|+.++|.....++++. ...+.       -...+.++       ..+..|....++.-+|..+++.++
T Consensus       265 ~~~~~A~~l~~~g~~~~A~~~L~~~l~~-~~~~~l~~l~~~l~~~~~~~al~~~e~~lk~~P~~~~l~l~lgrl~~~~~~  343 (398)
T PRK10747        265 LQVAMAEHLIECDDHDTAQQIILDGLKR-QYDERLVLLIPRLKTNNPEQLEKVLRQQIKQHGDTPLLWSTLGQLLMKHGE  343 (398)
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHhc-CCCHHHHHHHhhccCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCC
Confidence            3445688888999999999999998872 21110       00111111       223456667789999999999999


Q ss_pred             HHHHHHHHHHHHHcCCCchHHHHHHHHHhhh
Q 021445          280 LKGALLDTEFAMRDGDDNVKALFRQGQVSII  310 (312)
Q Consensus       280 ~~~Ai~~~~~al~l~p~~~Ka~~rrg~a~~~  310 (312)
                      |.+|.+.+.++++++|++.- +...+.++.+
T Consensus       344 ~~~A~~~le~al~~~P~~~~-~~~La~~~~~  373 (398)
T PRK10747        344 WQEASLAFRAALKQRPDAYD-YAWLADALDR  373 (398)
T ss_pred             HHHHHHHHHHHHhcCCCHHH-HHHHHHHHHH
Confidence            99999999999999998654 4556666654

>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]

Probab=90.38  E-value=1.8  Score=39.91  Aligned_cols=101  Identities=13%  Similarity=0.073  Sum_probs=70.7

Q ss_pred             hhhhhHhhhhhHHhhhcHHHHHHHHHHHHHHhhhccc--------cCCCCch----h-------------hhHHHHHHHH
Q 021445          211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWE--------KEGIDEG----K-------------SSSLRKTKSQ  265 (312)
Q Consensus       211 ~~~~~k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~--------~~~~~~~----~-------------~~~~~~~~~~  265 (312)
                      .+.+..+.|.++|...++++|+..+++.|..++....        ..-..+.    +             ...-......
T Consensus         5 q~k~q~~~g~~Ly~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~e   84 (518)
T KOG1941|consen    5 QTKKQIEKGLQLYQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLE   84 (518)
T ss_pred             hhHHHHHHHHhHhcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4556678899999999999999999999987654211        0000000    0             0112344566


Q ss_pred             HHhHHHHHHHHcCCHHHHHHHHHHHHHcCCCch-----HHHHHHHHHhhhh
Q 021445          266 IFTNSSACKLKLGDLKGALLDTEFAMRDGDDNV-----KALFRQGQVSIIL  311 (312)
Q Consensus       266 ~~~N~a~~~~kl~~~~~Ai~~~~~al~l~p~~~-----Ka~~rrg~a~~~L  311 (312)
                      +|.|++..+-++.+|.+++.+|...+.+....+     .++.-.|.|+..|
T Consensus        85 a~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgl  135 (518)
T KOG1941|consen   85 AYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGL  135 (518)
T ss_pred             HHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhH
Confidence            899999999999999999999999998765544     4555666666554

>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []

Probab=90.28  E-value=1.4  Score=38.58  Aligned_cols=65  Identities=17%  Similarity=0.220  Sum_probs=53.5

Q ss_pred             HhhhhhHHhhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHcCCHHHHHHHHHHHHH
Q 021445          216 KVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMR  292 (312)
Q Consensus       216 k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~  292 (312)
                      .+.|..+|+.|+|++|+..|+.+......            ..-..+...++..+..|+.++++.+..+..|-+.+.
T Consensus       182 ~~~A~ey~~~g~~~~A~~~l~~~~~~yr~------------egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leLls  246 (247)
T PF11817_consen  182 LEMAEEYFRLGDYDKALKLLEPAASSYRR------------EGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLELLS  246 (247)
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHHHHh------------CCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhc
Confidence            58899999999999999999999765432            113466777899999999999999999999887763

Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.

>PRK10866 outer membrane biogenesis protein BamD; Provisional

Probab=90.15  E-value=1.9  Score=37.76  Aligned_cols=69  Identities=14%  Similarity=0.110  Sum_probs=53.3

Q ss_pred             hHhhhhhHHhhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHcCC---------------
Q 021445          215 IKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGD---------------  279 (312)
Q Consensus       215 ~k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~---------------  279 (312)
                      ....|..+|+.++|.+|+..|++.++.-..               .|....++.-+|.|+..+++               
T Consensus        72 ~l~la~ayy~~~~y~~A~~~~e~fi~~~P~---------------~~~~~~a~Y~~g~~~~~~~~~~~~~~~~~~~~~rD  136 (243)
T PRK10866         72 QLDLIYAYYKNADLPLAQAAIDRFIRLNPT---------------HPNIDYVLYMRGLTNMALDDSALQGFFGVDRSDRD  136 (243)
T ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHhCcC---------------CCchHHHHHHHHHhhhhcchhhhhhccCCCccccC
Confidence            567889999999999999999999994322               12234577788888766641               


Q ss_pred             ---HHHHHHHHHHHHHcCCCch
Q 021445          280 ---LKGALLDTEFAMRDGDDNV  298 (312)
Q Consensus       280 ---~~~Ai~~~~~al~l~p~~~  298 (312)
                         -.+|+..+.+.++.-|+..
T Consensus       137 ~~~~~~A~~~~~~li~~yP~S~  158 (243)
T PRK10866        137 PQHARAAFRDFSKLVRGYPNSQ  158 (243)
T ss_pred             HHHHHHHHHHHHHHHHHCcCCh
Confidence               2579999999999999765

>smart00028 TPR Tetratricopeptide repeats

Probab=90.08  E-value=0.46  Score=25.62  Aligned_cols=27  Identities=41%  Similarity=0.541  Sum_probs=24.5

Q ss_pred             hhHhhhhhHHhhhcHHHHHHHHHHHHH
Q 021445          214 SIKVFGNEHYKKQDYKMALRKYRKALR  240 (312)
Q Consensus       214 ~~k~~Gn~~~~~~~y~~A~~~Y~kal~  240 (312)
                      .+...|..++..++++.|+..|+++++
T Consensus         3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~   29 (34)
T smart00028        3 ALYNLGNAYLKLGDYDEALEYYEKALE   29 (34)
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHc
Confidence            456789999999999999999999997

Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.

>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A

Probab=89.86  E-value=1.2  Score=37.71  Aligned_cols=73  Identities=12%  Similarity=0.108  Sum_probs=53.4

Q ss_pred             hhhhHhhhhhHHhhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHcC-----------CH
Q 021445          212 VDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLG-----------DL  280 (312)
Q Consensus       212 ~~~~k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~-----------~~  280 (312)
                      .+.+...|..+|+.++|.+|+..|++-++....               .+....++.-+|.|++++.           ..
T Consensus        42 ~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~---------------~~~~~~A~Y~~g~~~~~~~~~~~~~~~D~~~~  106 (203)
T PF13525_consen   42 PQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPN---------------SPKADYALYMLGLSYYKQIPGILRSDRDQTST  106 (203)
T ss_dssp             HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT----------------TTHHHHHHHHHHHHHHHHHHHH-TT---HHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC---------------CcchhhHHHHHHHHHHHhCccchhcccChHHH
Confidence            344678899999999999999999999985322               1233446777888877753           34


Q ss_pred             HHHHHHHHHHHHcCCCchH
Q 021445          281 KGALLDTEFAMRDGDDNVK  299 (312)
Q Consensus       281 ~~Ai~~~~~al~l~p~~~K  299 (312)
                      .+|+..+...++.-|++.-
T Consensus       107 ~~A~~~~~~li~~yP~S~y  125 (203)
T PF13525_consen  107 RKAIEEFEELIKRYPNSEY  125 (203)
T ss_dssp             HHHHHHHHHHHHH-TTSTT
T ss_pred             HHHHHHHHHHHHHCcCchH
Confidence            5899999999999998663

>TIGR00540 hemY_coli hemY protein

Probab=89.72  E-value=1.8  Score=40.92  Aligned_cols=82  Identities=11%  Similarity=-0.023  Sum_probs=62.7

Q ss_pred             hhhhhhhHhhhhhHHhhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHcCCHHHHHHHHH
Q 021445          209 MNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTE  288 (312)
Q Consensus       209 ~~~~~~~k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~  288 (312)
                      .+++.....+|-..+.+|+|+.|.+...++.+.                  .|.....+.-.|.+..++|+++.|.+...
T Consensus        81 ~~k~~~~~~~glla~~~g~~~~A~~~l~~~~~~------------------~~~~~~~~llaA~aa~~~g~~~~A~~~l~  142 (409)
T TIGR00540        81 RRKAQKQTEEALLKLAEGDYAKAEKLIAKNADH------------------AAEPVLNLIKAAEAAQQRGDEARANQHLE  142 (409)
T ss_pred             HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHhhc------------------CCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence            345667778899999999999999999988873                  22234456678899999999999999999


Q ss_pred             HHHHcCCCchH-HHHHHHHHh
Q 021445          289 FAMRDGDDNVK-ALFRQGQVS  308 (312)
Q Consensus       289 ~al~l~p~~~K-a~~rrg~a~  308 (312)
                      ++++..|.+.- +...+++.+
T Consensus       143 ~a~~~~p~~~l~~~~~~a~l~  163 (409)
T TIGR00540       143 EAAELAGNDNILVEIARTRIL  163 (409)
T ss_pred             HHHHhCCcCchHHHHHHHHHH
Confidence            99999887753 333234443

This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.

>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function

Probab=89.58  E-value=2.5  Score=36.26  Aligned_cols=82  Identities=15%  Similarity=0.125  Sum_probs=55.5

Q ss_pred             hHhhhhhHHhhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 021445          215 IKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDG  294 (312)
Q Consensus       215 ~k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~l~  294 (312)
                      .+..++......-++.|++.|.+|++.       +....+.   ++  ...+..=+|..+.++|++++|+..+.+++...
T Consensus       128 yR~~~~~~~E~~fl~~Al~~y~~a~~~-------e~~~~~~---~~--~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~  195 (214)
T PF09986_consen  128 YRDLGDEENEKRFLRKALEFYEEAYEN-------EDFPIEG---MD--EATLLYLIGELNRRLGNYDEAKRWFSRVIGSK  195 (214)
T ss_pred             hhccCCHHHHHHHHHHHHHHHHHHHHh-------CcCCCCC---ch--HHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCC
Confidence            356666666666678888889888873       2211111   11  22355568999999999999999999999775


Q ss_pred             CCch-HHHHHHHHHh
Q 021445          295 DDNV-KALFRQGQVS  308 (312)
Q Consensus       295 p~~~-Ka~~rrg~a~  308 (312)
                      ..+. ..+..+|+-+
T Consensus       196 ~~s~~~~l~~~AR~~  210 (214)
T PF09986_consen  196 KASKEPKLKDMARDQ  210 (214)
T ss_pred             CCCCcHHHHHHHHHH
Confidence            3333 3666666644

>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A

Probab=89.56  E-value=1.5  Score=35.07  Aligned_cols=47  Identities=17%  Similarity=0.045  Sum_probs=40.0

Q ss_pred             HHHhHHHHHHHHcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHhhhh
Q 021445          265 QIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQVSIIL  311 (312)
Q Consensus       265 ~~~~N~a~~~~kl~~~~~Ai~~~~~al~l~p~~~Ka~~rrg~a~~~L  311 (312)
                      .....+|...+.-|+|.-|++.++.++..+|+|..|..-++.||..|
T Consensus        71 d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~l  117 (141)
T PF14863_consen   71 DKVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQL  117 (141)
T ss_dssp             HHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHH
Confidence            34578899999999999999999999999999999999999999775

>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=89.19  E-value=0.56  Score=42.27  Aligned_cols=69  Identities=16%  Similarity=0.156  Sum_probs=52.9

Q ss_pred             hhhhHhhhhhHHhhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHcCCH-HHHHHHHHHH
Q 021445          212 VDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDL-KGALLDTEFA  290 (312)
Q Consensus       212 ~~~~k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~-~~Ai~~~~~a  290 (312)
                      ...+...+......|+|++|.....+|+.                  .++....++.|+..|...+|+. +.+-+...+.
T Consensus       201 ~~~lng~A~~~l~~~~~~eAe~~L~~al~------------------~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL  262 (290)
T PF04733_consen  201 PKLLNGLAVCHLQLGHYEEAEELLEEALE------------------KDPNDPDTLANLIVCSLHLGKPTEAAERYLSQL  262 (290)
T ss_dssp             HHHHHHHHHHHHHCT-HHHHHHHHHHHCC------------------C-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHH------------------hccCCHHHHHHHHHHHHHhCCChhHHHHHHHHH
Confidence            34467789999999999999999999887                  3445566899999999999998 4555666666


Q ss_pred             HHcCCCch
Q 021445          291 MRDGDDNV  298 (312)
Q Consensus       291 l~l~p~~~  298 (312)
                      -..+|+++
T Consensus       263 ~~~~p~h~  270 (290)
T PF04733_consen  263 KQSNPNHP  270 (290)
T ss_dssp             HHHTTTSH
T ss_pred             HHhCCCCh
Confidence            67888766

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.

>PF06957 COPI_C: Coatomer (COPI) alpha subunit C-terminus; InterPro: IPR010714 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=88.92  E-value=1.3  Score=41.80  Aligned_cols=92  Identities=12%  Similarity=0.138  Sum_probs=54.1

Q ss_pred             hhhhhhhHhhhhhHHhhhcHHHHHHHHHHHHHHhhhcc----------------------------ccCCCCc---hh--
Q 021445          209 MNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICW----------------------------EKEGIDE---GK--  255 (312)
Q Consensus       209 ~~~~~~~k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~----------------------------~~~~~~~---~~--  255 (312)
                      +.......+.|-++|+.|+|.+|+..|+..|..+-...                            .......   ++  
T Consensus       201 l~~L~~~Lk~gyk~~t~gKF~eA~~~Fr~iL~~i~l~vv~~~~E~~e~~eli~icrEYilgl~iEl~Rr~l~~~~~~~~k  280 (422)
T PF06957_consen  201 LSSLEERLKEGYKLFTAGKFEEAIEIFRSILHSIPLLVVESREEEDEAKELIEICREYILGLSIELERRELPKDPVEDQK  280 (422)
T ss_dssp             HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHC--BSSCHHHHHHHHHHHHHHHHHHHHHHHHHHCTS-TTTHHHHH
T ss_pred             HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhheeeecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhhHH
Confidence            33444455679999999999999999999886541110                            0111111   11  


Q ss_pred             ----------hhHHHHHHHHHHhHHHH-HHHHcCCHHHHHHHHHHHHHcCCCchHH
Q 021445          256 ----------SSSLRKTKSQIFTNSSA-CKLKLGDLKGALLDTEFAMRDGDDNVKA  300 (312)
Q Consensus       256 ----------~~~~~~~~~~~~~N~a~-~~~kl~~~~~Ai~~~~~al~l~p~~~Ka  300 (312)
                                ...+.+....+-++.|. ..+|+++|.-|...|.+.|++.|....+
T Consensus       281 R~lELAAYFThc~LQp~H~~LaLr~AM~~~~K~KNf~tAa~FArRLLel~p~~~~a  336 (422)
T PF06957_consen  281 RNLELAAYFTHCKLQPSHLILALRSAMSQAFKLKNFITAASFARRLLELNPSPEVA  336 (422)
T ss_dssp             HHHHHHHHHCCS---HHHHHHHHHHHHHHCCCTTBHHHHHHHHHHHHCT--SCHHH
T ss_pred             HHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHcCCCHHHH
Confidence                      01234444444333333 3467899999999999999999876543

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the C terminus (approximately 500 residues) of the eukaryotic coatomer alpha subunit [, ]. This domain is found along with the IPR006692 from INTERPRO domain. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0005515 protein binding, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030126 COPI vesicle coat; PDB: 3MKR_B 3MV2_E 3MKQ_B 3MV3_A.

>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=88.70  E-value=3.1  Score=36.14  Aligned_cols=73  Identities=19%  Similarity=0.235  Sum_probs=51.7

Q ss_pred             hcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHcCCHHHHHHHHHHHHHcCCC------chH
Q 021445          226 QDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDD------NVK  299 (312)
Q Consensus       226 ~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~l~p~------~~K  299 (312)
                      .+++.||.+|++|-++....            +....-..|++..|.---.+++|.+||.-++++....-+      .+|
T Consensus       128 ~d~ekaI~~YE~Aae~yk~e------------es~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~LLKys~K  195 (288)
T KOG1586|consen  128 QDFEKAIAHYEQAAEYYKGE------------ESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDNNLLKYSAK  195 (288)
T ss_pred             HHHHHHHHHHHHHHHHHcch------------hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHhHHH
Confidence            57899999999999876541            133444557777777777899999999999999854332      456


Q ss_pred             HHHHH-HHHhhh
Q 021445          300 ALFRQ-GQVSII  310 (312)
Q Consensus       300 a~~rr-g~a~~~  310 (312)
                      .|+-+ |.||+.
T Consensus       196 dyflkAgLChl~  207 (288)
T KOG1586|consen  196 DYFLKAGLCHLC  207 (288)
T ss_pred             HHHHHHHHHhHh
Confidence            66655 666653

>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A

Probab=88.43  E-value=0.79  Score=25.82  Aligned_cols=27  Identities=19%  Similarity=0.413  Sum_probs=24.3

Q ss_pred             hhHhhhhhHHhhhcHHHHHHHHHHHHH
Q 021445          214 SIKVFGNEHYKKQDYKMALRKYRKALR  240 (312)
Q Consensus       214 ~~k~~Gn~~~~~~~y~~A~~~Y~kal~  240 (312)
                      .+...|..+++.|++++|+..|++.+.
T Consensus         2 a~~~~a~~~~~~g~~~~A~~~~~~~~~   28 (33)
T PF13174_consen    2 ALYRLARCYYKLGDYDEAIEYFQRLIK   28 (33)
T ss_dssp             HHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence            466789999999999999999999987

>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=88.04  E-value=1.7  Score=38.37  Aligned_cols=46  Identities=17%  Similarity=0.249  Sum_probs=40.3

Q ss_pred             HHHHhHHHHHHHHcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHhh
Q 021445          264 SQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQVSI  309 (312)
Q Consensus       264 ~~~~~N~a~~~~kl~~~~~Ai~~~~~al~l~p~~~Ka~~rrg~a~~  309 (312)
                      ..+++-.|.|++.+++|++|......||..+++++.++-+.-.+-.
T Consensus       207 ~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~  252 (299)
T KOG3081|consen  207 PLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLIVLAL  252 (299)
T ss_pred             hHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHH
Confidence            4577889999999999999999999999999999999887755433

>KOG2796 consensus Uncharacterized conserved protein [Function unknown]

Probab=87.79  E-value=2.3  Score=37.62  Aligned_cols=50  Identities=18%  Similarity=0.042  Sum_probs=44.7

Q ss_pred             HHHHHHhHHHHHHHHcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHhhhh
Q 021445          262 TKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQVSIIL  311 (312)
Q Consensus       262 ~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~l~p~~~Ka~~rrg~a~~~L  311 (312)
                      ....++.|.+..|+-.++|.+|...++++++.||.++.|--.+|.|++-|
T Consensus       250 ~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYl  299 (366)
T KOG2796|consen  250 GKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYL  299 (366)
T ss_pred             hhHHHHhhhhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHH
Confidence            45668899999999999999999999999999999999999988887654

>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=87.34  E-value=4.6  Score=28.77  Aligned_cols=69  Identities=20%  Similarity=0.097  Sum_probs=46.8

Q ss_pred             hhhhhhHhhhhhHHhhhcHHHHHHHHHHHHHHhhhccc---cCCCCchhhhHHHHHHHHHHhHHHHHHHHcC
Q 021445          210 NAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWE---KEGIDEGKSSSLRKTKSQIFTNSSACKLKLG  278 (312)
Q Consensus       210 ~~~~~~k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~---~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~  278 (312)
                      +.|-...++|-.+=..|+.++|+..|++|++.|..-..   ......+++..........-.|+..+..+|+
T Consensus         6 ~~A~~~I~kaL~~dE~g~~e~Al~~Y~~gi~~l~eg~ai~~~~~~~~~~w~~ar~~~~Km~~~~~~v~~RL~   77 (79)
T cd02679           6 KQAFEEISKALRADEWGDKEQALAHYRKGLRELEEGIAVPVPSAGVGSQWERARRLQQKMKTNLNMVKTRLQ   77 (79)
T ss_pred             HHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHHHHHHcCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            45555666777777779999999999999998866432   1233445555566666666677776666553

This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.

>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models

Probab=87.22  E-value=0.96  Score=24.55  Aligned_cols=23  Identities=17%  Similarity=-0.078  Sum_probs=20.7

Q ss_pred             HHhHHHHHHHHcCCHHHHHHHHH
Q 021445          266 IFTNSSACKLKLGDLKGALLDTE  288 (312)
Q Consensus       266 ~~~N~a~~~~kl~~~~~Ai~~~~  288 (312)
                      ++.++|..+..+|++++|...+.
T Consensus         3 a~~~la~~~~~~G~~~eA~~~l~   25 (26)
T PF07721_consen    3 ARLALARALLAQGDPDEAERLLR   25 (26)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHh
Confidence            67899999999999999998765

The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding

>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene

Probab=86.76  E-value=3.7  Score=39.42  Aligned_cols=85  Identities=14%  Similarity=0.005  Sum_probs=56.5

Q ss_pred             HHHHHHHHHHHHHHhhhccccC----CCCchhhh---HHHHHHHHHHhHHHHHHHHcCCHHHHHHHHHHHHHcCCC--ch
Q 021445          228 YKMALRKYRKALRYLDICWEKE----GIDEGKSS---SLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDD--NV  298 (312)
Q Consensus       228 y~~A~~~Y~kal~~l~~~~~~~----~~~~~~~~---~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~l~p~--~~  298 (312)
                      ..+|.+.|++|++.-+......    ........   .......-+-..+|.|.-|+|+.++|++.+...++..|.  +.
T Consensus       216 i~Eae~l~rqAvkAgE~~lg~s~~~~~~g~~~e~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l  295 (539)
T PF04184_consen  216 IVEAEELLRQAVKAGEASLGKSQFLQHHGHFWEAWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNL  295 (539)
T ss_pred             HHHHHHHHHHHHHHHHHhhchhhhhhcccchhhhhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchh
Confidence            6788888999888654432111    11111000   011223445677999999999999999999999988775  55


Q ss_pred             HHHHHHHHHhhhhC
Q 021445          299 KALFRQGQVSIILL  312 (312)
Q Consensus       299 Ka~~rrg~a~~~L~  312 (312)
                      -..+....+|+.++
T Consensus       296 ~IrenLie~LLelq  309 (539)
T PF04184_consen  296 NIRENLIEALLELQ  309 (539)
T ss_pred             hHHHHHHHHHHhcC
Confidence            67777777777654

The molecular function of this protein is uncertain.

>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]

Probab=86.49  E-value=1.1  Score=41.28  Aligned_cols=84  Identities=21%  Similarity=0.199  Sum_probs=62.6

Q ss_pred             hHhhhhhHHhhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 021445          215 IKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDG  294 (312)
Q Consensus       215 ~k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~l~  294 (312)
                      ....|++....+.|++|++.|++|+++....      +      -.-+...++..++.-+-+++++++|+-...+|+++-
T Consensus       125 ~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~------~------D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv  192 (518)
T KOG1941|consen  125 SLSMGNAHLGLSVFQKALESFEKALRYAHNN------D------DAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELV  192 (518)
T ss_pred             hhhHHHHhhhHHHHHHHHHHHHHHHHHhhcc------C------CceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHH
Confidence            4458999999999999999999999975431      0      112335688999999999999999999999998664


Q ss_pred             CC----c------hHHHHHHHHHhhh
Q 021445          295 DD----N------VKALFRQGQVSII  310 (312)
Q Consensus       295 p~----~------~Ka~~rrg~a~~~  310 (312)
                      ..    +      .-++|+.+.||..
T Consensus       193 ~s~~l~d~~~kyr~~~lyhmaValR~  218 (518)
T KOG1941|consen  193 NSYGLKDWSLKYRAMSLYHMAVALRL  218 (518)
T ss_pred             HhcCcCchhHHHHHHHHHHHHHHHHH
Confidence            32    1      2355666666543

>TIGR03504 FimV_Cterm FimV C-terminal domain

Probab=86.32  E-value=1.4  Score=27.52  Aligned_cols=26  Identities=23%  Similarity=0.323  Sum_probs=24.2

Q ss_pred             hHHHHHHHHcCCHHHHHHHHHHHHHc
Q 021445          268 TNSSACKLKLGDLKGALLDTEFAMRD  293 (312)
Q Consensus       268 ~N~a~~~~kl~~~~~Ai~~~~~al~l  293 (312)
                      +++|.+|+++|+++.|.+-.++++.-
T Consensus         3 LdLA~ayie~Gd~e~Ar~lL~evl~~   28 (44)
T TIGR03504         3 LDLARAYIEMGDLEGARELLEEVIEE   28 (44)
T ss_pred             hHHHHHHHHcCChHHHHHHHHHHHHc
Confidence            68999999999999999999999953

This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.

>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]

Probab=86.18  E-value=3.2  Score=37.21  Aligned_cols=57  Identities=11%  Similarity=-0.018  Sum_probs=44.6

Q ss_pred             chhhhHHHHHHHHHHhHHHHHHHHcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHhh
Q 021445          253 EGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQVSI  309 (312)
Q Consensus       253 ~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~l~p~~~Ka~~rrg~a~~  309 (312)
                      +++...+..+.+.++.-.|..|++.|.|.+|++.|.++|.+||-+...+.-.-+.|.
T Consensus       268 edererle~ly~kllgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la  324 (361)
T COG3947         268 EDERERLEQLYMKLLGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLA  324 (361)
T ss_pred             cchHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHH
Confidence            334455777788888888999999999999999999999999977665555444443

>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=85.83  E-value=1.7  Score=26.24  Aligned_cols=30  Identities=20%  Similarity=0.480  Sum_probs=24.7

Q ss_pred             hhHhhhhhHHhhhcHHHHHHHHHHHHHHhh
Q 021445          214 SIKVFGNEHYKKQDYKMALRKYRKALRYLD  243 (312)
Q Consensus       214 ~~k~~Gn~~~~~~~y~~A~~~Y~kal~~l~  243 (312)
                      .+-..|......++|.+|+..|++||++..
T Consensus         3 v~~~Lgeisle~e~f~qA~~D~~~aL~i~~   32 (38)
T PF10516_consen    3 VYDLLGEISLENENFEQAIEDYEKALEIQE   32 (38)
T ss_pred             HHHHHHHHHHHhccHHHHHHHHHHHHHHHH
Confidence            345567788889999999999999999643

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].

>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=85.54  E-value=4.9  Score=41.15  Aligned_cols=92  Identities=12%  Similarity=0.086  Sum_probs=59.6

Q ss_pred             hhhhhhhHhhhhhHHhhhcHHHHHHHHHHHHHHhhhccc----------------------------c---CCCCchhhh
Q 021445          209 MNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWE----------------------------K---EGIDEGKSS  257 (312)
Q Consensus       209 ~~~~~~~k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~----------------------------~---~~~~~~~~~  257 (312)
                      +....+..++|-++.+.|+|.+|+++|..+|-.+....-                            .   .+.+-+...
T Consensus       988 l~~l~~kl~~gy~ltt~gKf~eAie~Frsii~~i~l~vvd~~~e~aea~~li~i~~eYi~gL~~E~~Rr~l~~~~~~~~~ 1067 (1202)
T KOG0292|consen  988 LSQLNKKLQKGYKLTTEGKFGEAIEKFRSIIYSIPLLVVDSKEEEAEADELIKICREYIVGLSVELERRKLKKPNLEQQL 1067 (1202)
T ss_pred             HHHHHHHHHHHHhhhccCcHHHHHHHHHHHHhheeEEEecchhhHHHHHHHHHHHHHHHhhheeeeeecccCCchHHHHH
Confidence            455666789999999999999999999888743311100                            0   111111111


Q ss_pred             ---------HHHHHHHH-HHhHHHHHHHHcCCHHHHHHHHHHHHHcCCCchHH
Q 021445          258 ---------SLRKTKSQ-IFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKA  300 (312)
Q Consensus       258 ---------~~~~~~~~-~~~N~a~~~~kl~~~~~Ai~~~~~al~l~p~~~Ka  300 (312)
                               .+.|.... ++.---..++|+++|+.|-..|.+.|++-|.-..|
T Consensus      1068 ElAaYFt~~~Lqp~H~ilalrtA~n~ffK~kN~ktAs~fa~rLlel~~~~~~A 1120 (1202)
T KOG0292|consen 1068 ELAAYFTHCKLQPMHRILALRTAMNVFFKLKNLKTAAEFARRLLELAPSPPVA 1120 (1202)
T ss_pred             HHHHHhhcCCCCcHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCChHH
Confidence                     12233222 23333357889999999999999999999865544

>COG2912 Uncharacterized conserved protein [Function unknown]

Probab=85.33  E-value=3  Score=36.87  Aligned_cols=54  Identities=19%  Similarity=0.075  Sum_probs=44.6

Q ss_pred             HHHHHHHHHhHHHHHHHHcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHhhhhC
Q 021445          259 LRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQVSIILL  312 (312)
Q Consensus       259 ~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~l~p~~~Ka~~rrg~a~~~L~  312 (312)
                      .......+..|+=..++..++++.|+.+.++.|.++|.++-.+--||.+|..|+
T Consensus       176 ~~~il~rll~~lk~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~  229 (269)
T COG2912         176 NREILSRLLRNLKAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLG  229 (269)
T ss_pred             HHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcC
Confidence            445566778888888888999999999999999999999888888888887763

>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones []

Probab=85.28  E-value=3.2  Score=24.67  Aligned_cols=31  Identities=13%  Similarity=-0.013  Sum_probs=24.4

Q ss_pred             HhHHHHHHHHcCCHHHHHHHHH--HHHHcCCCc
Q 021445          267 FTNSSACKLKLGDLKGALLDTE--FAMRDGDDN  297 (312)
Q Consensus       267 ~~N~a~~~~kl~~~~~Ai~~~~--~al~l~p~~  297 (312)
                      +.-+|.++..+|+|++|+..+.  -+..+++.|
T Consensus         4 ~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~~n   36 (36)
T PF07720_consen    4 LYGLAYNFYQKGKYDEAIHFFQYAFLCALDKYN   36 (36)
T ss_dssp             HHHHHHHHHHTT-HHHHHHHHHHHHHHHHTTT-
T ss_pred             HHHHHHHHHHHhhHHHHHHHHHHHHHHHhcccC
Confidence            4567999999999999999944  888888764

; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.

>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]

Probab=85.13  E-value=3.2  Score=36.18  Aligned_cols=55  Identities=20%  Similarity=0.120  Sum_probs=44.4

Q ss_pred             cHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHH-cCCHHHHHHHHHHHH
Q 021445          227 DYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLK-LGDLKGALLDTEFAM  291 (312)
Q Consensus       227 ~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~k-l~~~~~Ai~~~~~al  291 (312)
                      --+.|...|++|+++....          .....|....+.+|.|..|+. +++.++|++.+.+|+
T Consensus       141 ~~~~a~~aY~~A~~~a~~~----------L~~~~p~rLgl~LN~svF~yei~~~~~~A~~ia~~af  196 (236)
T PF00244_consen  141 AAEKALEAYEEALEIAKKE----------LPPTHPLRLGLALNYSVFYYEILNDPEKAIEIAKQAF  196 (236)
T ss_dssp             HHHHHHHHHHHHHHHHHHH----------SCTTSHHHHHHHHHHHHHHHHTSS-HHHHHHHHHHHH
T ss_pred             HHHHHHHhhhhHHHHHhcc----------cCCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHH
Confidence            3488999999999986552          112568899999999998866 899999999999998

There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....

>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function

Probab=85.12  E-value=3  Score=31.69  Aligned_cols=75  Identities=17%  Similarity=0.144  Sum_probs=49.6

Q ss_pred             hhhhHHhhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHcC-----------CHHHHHHH
Q 021445          218 FGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLG-----------DLKGALLD  286 (312)
Q Consensus       218 ~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~-----------~~~~Ai~~  286 (312)
                      ++..+|++|++-+|++.-+..+..       ...+...        ..++.--+..+.++.           -...|+++
T Consensus         2 ~A~~~~~rGnhiKAL~iied~i~~-------h~~~~~~--------~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~   66 (111)
T PF04781_consen    2 KAKDYFARGNHIKALEIIEDLISR-------HGEDESS--------WLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVEC   66 (111)
T ss_pred             hHHHHHHccCHHHHHHHHHHHHHH-------ccCCCch--------HHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHH
Confidence            567889999999888888887762       1111110        122333333333332           24679999


Q ss_pred             HHHHHHcCCCchHHHHHHHHH
Q 021445          287 TEFAMRDGDDNVKALFRQGQV  307 (312)
Q Consensus       287 ~~~al~l~p~~~Ka~~rrg~a  307 (312)
                      +.++..+.|..+..+|..|.=
T Consensus        67 ~s~a~~Lsp~~A~~L~~la~~   87 (111)
T PF04781_consen   67 FSRAVELSPDSAHSLFELASQ   87 (111)
T ss_pred             HHHHhccChhHHHHHHHHHHH
Confidence            999999999999888888764

>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=84.54  E-value=0.43  Score=43.37  Aligned_cols=67  Identities=13%  Similarity=0.059  Sum_probs=59.0

Q ss_pred             hhhhhHhhhhhHHhhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHcCCHHHHHHHHHHH
Q 021445          211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA  290 (312)
Q Consensus       211 ~~~~~k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~a  290 (312)
                      .+.....++..+.+.++...|++.|..||+                  +++....-|--|+.++--|++|.+|-.+...|
T Consensus       147 ~a~l~~kr~sv~lkl~kp~~airD~d~A~e------------------in~Dsa~~ykfrg~A~rllg~~e~aa~dl~~a  208 (377)
T KOG1308|consen  147 LAILYAKRASVFLKLKKPNAAIRDCDFAIE------------------INPDSAKGYKFRGYAERLLGNWEEAAHDLALA  208 (377)
T ss_pred             hhhhcccccceeeeccCCchhhhhhhhhhc------------------cCcccccccchhhHHHHHhhchHHHHHHHHHH
Confidence            455567899999999999999999999999                  66777777888888999999999999999999


Q ss_pred             HHcCC
Q 021445          291 MRDGD  295 (312)
Q Consensus       291 l~l~p  295 (312)
                      +++|=
T Consensus       209 ~kld~  213 (377)
T KOG1308|consen  209 CKLDY  213 (377)
T ss_pred             Hhccc
Confidence            98873

>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=83.75  E-value=3.2  Score=36.15  Aligned_cols=63  Identities=14%  Similarity=0.006  Sum_probs=56.3

Q ss_pred             hhhHhhhhhHHhhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHcCCHHHHHHHHHHHHH
Q 021445          213 DSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMR  292 (312)
Q Consensus       213 ~~~k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~  292 (312)
                      .-+.+++-.+++.++|+.+...-.+|++                  +.+.....+.=++++.+..+.|.+||....+|..
T Consensus        45 ~Y~tnralchlk~~~~~~v~~dcrralq------------------l~~N~vk~h~flg~~~l~s~~~~eaI~~Lqra~s  106 (284)
T KOG4642|consen   45 SYYTNRALCHLKLKHWEPVEEDCRRALQ------------------LDPNLVKAHYFLGQWLLQSKGYDEAIKVLQRAYS  106 (284)
T ss_pred             hhhhhHHHHHHHhhhhhhhhhhHHHHHh------------------cChHHHHHHHHHHHHHHhhccccHHHHHHHHHHH
Confidence            3467888889999999999999999999                  7788889999999999999999999999999964


Q ss_pred             c
Q 021445          293 D  293 (312)
Q Consensus       293 l  293 (312)
                      +
T Consensus       107 l  107 (284)
T KOG4642|consen  107 L  107 (284)
T ss_pred             H
Confidence            3

>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B

Probab=83.50  E-value=3.4  Score=30.19  Aligned_cols=40  Identities=18%  Similarity=0.037  Sum_probs=33.2

Q ss_pred             HHHHHHHHHhHHHHHHHHcCCHHHHHHHHHHHHHcCCCch
Q 021445          259 LRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNV  298 (312)
Q Consensus       259 ~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~l~p~~~  298 (312)
                      .+|....+...+|.+++..|++++|++.+-.+++.++.+-
T Consensus        17 ~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~   56 (90)
T PF14561_consen   17 ANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYE   56 (90)
T ss_dssp             HSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCC
T ss_pred             cCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccc
Confidence            5677778899999999999999999999999999988763

>KOG0495 consensus HAT repeat protein [RNA processing and modification]

Probab=83.33  E-value=4.2  Score=40.42  Aligned_cols=97  Identities=19%  Similarity=0.144  Sum_probs=59.7

Q ss_pred             hHhhhhhHHhhhcHHHHHHHHHHHHHHhhhccc------cCCCCchhhhHHHHHHH---------HHHhHHHHHHHHcCC
Q 021445          215 IKVFGNEHYKKQDYKMALRKYRKALRYLDICWE------KEGIDEGKSSSLRKTKS---------QIFTNSSACKLKLGD  279 (312)
Q Consensus       215 ~k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~------~~~~~~~~~~~~~~~~~---------~~~~N~a~~~~kl~~  279 (312)
                      |.--+...++.|+...|.....+|++.......      .-.....+......++.         .+|..-+...--+++
T Consensus       587 wlM~ake~w~agdv~~ar~il~~af~~~pnseeiwlaavKle~en~e~eraR~llakar~~sgTeRv~mKs~~~er~ld~  666 (913)
T KOG0495|consen  587 WLMYAKEKWKAGDVPAARVILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLAKARSISGTERVWMKSANLERYLDN  666 (913)
T ss_pred             HHHHHHHHHhcCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhccCCcchhhHHHhHHHHHhhh
Confidence            345556666778888888777777764211100      00000000011122221         244444555555889


Q ss_pred             HHHHHHHHHHHHHcCCCchHHHHHHHHHhhhh
Q 021445          280 LKGALLDTEFAMRDGDDNVKALFRQGQVSIIL  311 (312)
Q Consensus       280 ~~~Ai~~~~~al~l~p~~~Ka~~rrg~a~~~L  311 (312)
                      .++|++.|+++|+.-|.+.|.|.-+|+.+..+
T Consensus       667 ~eeA~rllEe~lk~fp~f~Kl~lmlGQi~e~~  698 (913)
T KOG0495|consen  667 VEEALRLLEEALKSFPDFHKLWLMLGQIEEQM  698 (913)
T ss_pred             HHHHHHHHHHHHHhCCchHHHHHHHhHHHHHH
Confidence            99999999999999999999999999998764

>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []

Probab=83.17  E-value=10  Score=33.80  Aligned_cols=62  Identities=18%  Similarity=0.148  Sum_probs=50.1

Q ss_pred             HHhhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHcC-CHHHHHHHHHHHHHc
Q 021445          222 HYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLG-DLKGALLDTEFAMRD  293 (312)
Q Consensus       222 ~~~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~-~~~~Ai~~~~~al~l  293 (312)
                      ..++|+++.|...|.|+=......          .+......+..++|.|...++.+ +|++|+....+|+++
T Consensus         3 A~~~~~~~~A~~~~~K~~~~~~~~----------~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~   65 (278)
T PF08631_consen    3 AWKQGDLDLAEHMYSKAKDLLNSL----------DPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDI   65 (278)
T ss_pred             chhhCCHHHHHHHHHHhhhHHhcC----------CcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHH
Confidence            457899999999999998765211          12245677889999999999999 999999999988866

It is also involved in sporulation [].

>COG2912 Uncharacterized conserved protein [Function unknown]

Probab=82.49  E-value=3.5  Score=36.46  Aligned_cols=74  Identities=18%  Similarity=0.205  Sum_probs=59.4

Q ss_pred             HhhhhhHHhhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHcCCHHHHHHHHHHHHHcCC
Q 021445          216 KVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGD  295 (312)
Q Consensus       216 k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~l~p  295 (312)
                      ...=+.+..+++++.|..+-.+.|.                  +.|....-..-||.+|.+++.+.-|++|....++.-|
T Consensus       185 ~~lk~~~~~e~~~~~al~~~~r~l~------------------l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P  246 (269)
T COG2912         185 RNLKAALLRELQWELALRVAERLLD------------------LNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCP  246 (269)
T ss_pred             HHHHHHHHHhhchHHHHHHHHHHHh------------------hCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhCC
Confidence            3444567788899999998888888                  4444555566799999999999999999999999989


Q ss_pred             CchHHHHHHHHH
Q 021445          296 DNVKALFRQGQV  307 (312)
Q Consensus       296 ~~~Ka~~rrg~a  307 (312)
                      +..-|-.-|++.
T Consensus       247 ~~~~a~~ir~~l  258 (269)
T COG2912         247 DDPIAEMIRAQL  258 (269)
T ss_pred             CchHHHHHHHHH
Confidence            888877766654

>PRK04841 transcriptional regulator MalT; Provisional

Probab=80.59  E-value=6.8  Score=40.88  Aligned_cols=69  Identities=7%  Similarity=-0.114  Sum_probs=55.1

Q ss_pred             hHhhhhhHHhhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 021445          215 IKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDG  294 (312)
Q Consensus       215 ~k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~l~  294 (312)
                      +...|..+...|++.+|...|++++.......            .......++..+|.++.++|++++|.....+|+++-
T Consensus       694 ~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g------------~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la  761 (903)
T PRK04841        694 WRNIARAQILLGQFDEAEIILEELNENARSLR------------LMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLA  761 (903)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhC------------chHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence            45677788899999999999999998643210            122455678889999999999999999999999776


Q ss_pred             C
Q 021445          295 D  295 (312)
Q Consensus       295 p  295 (312)
                      .
T Consensus       762 ~  762 (903)
T PRK04841        762 N  762 (903)
T ss_pred             C
Confidence            4

>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]

Probab=80.17  E-value=7.7  Score=34.68  Aligned_cols=54  Identities=11%  Similarity=0.088  Sum_probs=49.3

Q ss_pred             hHHHHHHHHHHhHHHHHHHHcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHhhh
Q 021445          257 SSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQVSII  310 (312)
Q Consensus       257 ~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~l~p~~~Ka~~rrg~a~~~  310 (312)
                      ..+.+.++.++.-++..+...++++.+++..++.+.++|.+.++|.+.-.+|+.
T Consensus       146 ~~l~e~~~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~  199 (280)
T COG3629         146 RALEELFIKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLV  199 (280)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHH
Confidence            346788899999999999999999999999999999999999999998888764

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	312
1ihg_A	370	Bovine Cyclophilin 40, Monoclinic Form Length = 370		3e-73
1dyw_A	173	Biochemical And Structural Characterization Of A Di		2e-51
2wfj_A	179	Atomic Resolution Crystal Structure Of The Ppiase D		4e-50
2wfi_A	179	Atomic Resolution Crystal Structure Of The Ppiase D		4e-50
2gw2_A	198	Crystal Structure Of The Peptidyl-Prolyl Isomerase		2e-49
1c5f_A	177	Crystal Structure Of The Cyclophilin-Like Domain Fr		9e-48
2hqj_A	183	Cyclophilin From Leishmania Major Length = 183		4e-46
2he9_A	192	Structure Of The Peptidylprolyl Isomerase Domain Of		2e-44
1qoi_A	177	U4U6 SNRNP-Specific Cyclophilin Snucyp-20 Length =		2e-44
2plu_A	186	Crystal Structure Of Cryptosporidium Parvum Cycloph		1e-43
4frv_A	185	Crystal Structure Of Mutated Cyclophilin B That Cau		2e-43
4fru_A	185	Crystal Structure Of Horse Wild-Type Cyclophilin B		2e-43
2z6w_A	165	Crystal Structure Of Human Cyclophilin D In Complex		4e-43
3ich_A	188	Crystal Structure Of Cyclophilin B At 1.2 A Resolut		6e-43
1cyn_A	178	Cyclophilin B Complexed With [d-(Cholinylester)ser8		8e-43
3rdd_A	184	Human Cyclophilin A Complexed With An Inhibitor Len		8e-43
2wlw_A	165	Structure Of The N-Terminal Capsid Domain Of Hiv-2		9e-43
2xgy_B	173	Complex Of Rabbit Endogenous Lentivirus (Relik)caps		9e-43
2rma_A	165	Crystal Structures Of Cyclophilin A Complexed With		1e-42
4dgd_A	165	Trimcyp Cyclophilin Domain From Macaca Mulatta: H70		1e-42
1m9e_A	164	X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-		1e-42
3r49_A	166	Human Cyclophilin D Complexed With Quinolin-8-Amine		1e-42
2bit_X	165	Crystal Structure Of Human Cyclophilin D At 1.7 A R		2e-42
3qyu_A	164	Crystal Structure Of Human Cyclophilin D At 1.54 A		2e-42
3k0o_A	165	Room Temperature Structure Of Cypa Mutant Ser99thr		2e-42
3k0r_A	165	Cryogenic Structure Of Cypa Mutant Arg55lys Length		2e-42
1qng_A	170	Plasmodium Falciparum Cyclophilin Complexed With Cy		3e-42
2cfe_A	162	The 1.5 A Crystal Structure Of The Malassezia Sympo		4e-42
1bck_A	165	Human Cyclophilin A Complexed With 2-Thr Cyclospori		4e-42
5cyh_A	164	Cyclophilin A Complexed With Dipeptide Gly-Pro Leng		4e-42
2x2a_A	165	Free Acetyl-Cypa Trigonal Form Length = 165		5e-42
2x2c_K	165	Acetyl-Cypa:cyclosporine Complex Length = 165		5e-42
2ck1_A	172	The Structure Of Oxidised Cyclophilin A From S. Man		6e-42
2alf_A	164	Crystal Structure Of Human Cypa Mutant K131a Length		9e-42
2rmc_A	182	Crystal Structure Of Murine Cyclophilin C Complexed		1e-41
2x83_B	163	Evolutionary Basis Of Hiv Restriction By The Antire		1e-41
1qnh_A	170	Plasmodium Falciparum Cyclophilin (Double Mutant) C		2e-41
2esl_A	190	Human Cyclophilin C In Complex With Cyclosporin A L		2e-41
2x25_B	169	Free Acetyl-Cypa Orthorhombic Form Length = 169		3e-41
2r99_A	173	Crystal Structure Of Cyclophilin Abh-Like Domain Of		2e-40
1zmf_A	165	C Domain Of Human Cyclophilin-33(Hcyp33) Length = 1		2e-40
3pmp_A	164	Crystal Structure Of Cyclophilin A From Moniliophth		2e-40
1xo7_A	166	Crystal Structure Of Cyclophilin From Trypanosoma C		3e-40
3o7t_A	164	Crystal Structure Of Cyclophilin A From Moniliophth		6e-40
1ist_A	162	Crystal Structure Of Yeast Cyclophilin A, Cpr1 Leng		1e-39
1aws_A	164	Secypa Complexed With Hagpia (Pseudo-Symmetric Mono		1e-39
3uch_A	174	Crystal Structure Of A Hypotherical Peptidyl-Prolyl		2e-38
1z81_A	229	Crystal Structure Of Cyclophilin From Plasmodium Yo		3e-38
1h0p_A	182	Cyclophilin_5 From C. Elegans Length = 182		1e-36
2haq_A	172	Crystal Structure Of Cyclophilin A From Leishmania		2e-36
4i9y_A	167	Structure Of The C-terminal Domain Of Nup358 Length		3e-36
3bt8_A	172	Crystal Structure Of Mutant Cyclophilin (R147a) Fro		3e-36
3k2c_A	193	Crystal Structure Of Peptidyl-Prolyl Cis-Trans Isom		4e-35
2c3b_A	172	The Crystal Structure Of Aspergillus Fumigatus Cycl		2e-32
1xwn_A	174	Solution Structure Of Cyclophilin Like 1(Ppil1) And		9e-28
2x7k_A	166	The Crystal Structure Of Ppil1 In Complex With Cycl		9e-28
2k7n_A	203	Solution Structure Of The Ppil1 Bound To A Fragment		1e-27
2oju_A	167	X-Ray Structure Of Complex Of Human Cyclophilin J W		1e-25
1xyh_A	161	Crystal Structure Of Recombinant Human Cyclophilin		2e-25
2a2n_A	176	Crystal Structure Of The Peptidylprolyl Isomerase D		5e-24
2b71_A	196	Plasmodium Yoelii Cyclophilin-Like Protein Length =		2e-23
2fu0_A	160	Plasmodium Falciparum Cyclophilin Pfe0505w Putative		1e-21
2poe_A	185	Crystal Structure Of Cryptosporidium Parvum Cycloph		9e-21
1zkc_A	197	Crystal Structure Of The Cyclophiln_ring Domain Of		1e-20
1w74_A	191	X-Ray Structure Of Peptidyl-Prolyl Cis-Trans Isomer		6e-20
2hq6_A	185	Structure Of The Cyclophilin_cecyp16-like Domain Of		2e-16
3bo7_A	201	Crystal Structure Of Toxoplasma Gondii Peptidyl-Pro		4e-15
3t1u_A	163	Crystal Structure Of The Complex Of Cyclophilin-a E		5e-09
2nul_A	164	Peptidylprolyl Isomerase From E. Coli Length = 164		3e-07
2ose_A	234	Crystal Structure Of The Mimivirus Cyclophilin Leng		9e-07
3s6m_A	167	The Structure Of A Peptidyl-Prolyl Cis-Trans Isomer		1e-06
1lop_A	164	Cyclophilin A Complexed With Succinyl-Ala-Pro-Ala-P		1e-06
1clh_A	166	Three-Dimensional Solution Structure Of Escherichia		2e-06
1j2a_A	166	Structure Of E. Coli Cyclophilin B K163t Mutant Len		3e-06
3bkp_A	232	Crystal Structure Of The Toxoplasma Gondii Cyclophi		6e-06
3rkv_A	162	C-Terminal Domain Of Protein C56c10.10, A Putative		2e-04

>pdb|1IHG|A Chain A, Bovine Cyclophilin 40, Monoclinic Form Length = 370

Iteration: 1
 Score =  271 bits (694), Expect = 3e-73,   Method: Compositional matrix adjust.
 Identities = 142/305 (46%), Positives = 186/305 (60%), Gaps = 3/305 (0%)
Query: 2   ARPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRF 61
           + PR F D+ IG E  GRI++E++ D++PKTAENFRALCTGEKGIGP TG PLH+KG  F
Sbjct: 14  SNPRVFFDVDIGGERVGRIVLELFADIVPKTAENFRALCTGEKGIGPTTGKPLHFKGCPF 73
Query: 62  HRVIKGFMIQXXXXXXXXXXXXESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFF 121
           HR+IK FMIQ            ESIYG KFEDENF  KH+++G+LSMANAG NTNGSQFF
Sbjct: 74  HRIIKKFMIQGGDFSNQNGTGGESIYGEKFEDENFHYKHDKEGLLSMANAGSNTNGSQFF 133
Query: 122 ITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTITDCGEIPEGADDGI 181
           ITT  T HLDGKHVVFG+VIKGMGV + +E+V     + P     I +CGE+ EG D GI
Sbjct: 134 ITTVPTPHLDGKHVVFGQVIKGMGVAKILENVEV-KGEKPAKLCVIAECGELKEGDDWGI 192
Query: 182 SNFFNDGDSYPDWPADLDQTPNELSWWMNAVDSIKVFGNEHYKKQDYKMALRKYRKALRY 241
                 GDS+PD+P D D    ++   +   + +K  GN  +K Q+++MA++KY K LRY
Sbjct: 193 FPKDGSGDSHPDFPEDADVDLKDVDKILLISEDLKNIGNTFFKSQNWEMAIKKYTKVLRY 252
Query: 242 LDICWEKEGIDEGKSSSLRKTKSQIFTNSSACXXXXXXXXXXXXXTEFAMRDGDDNVKAL 301
           ++    +   ++   + L+        N  AC                A+     N KAL
Sbjct: 253 VE--GSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKAL 310
Query: 302 FRQGQ 306
           +R+ Q
Sbjct: 311 YRRAQ 315

>pdb|1DYW|A Chain A, Biochemical And Structural Characterization Of A Divergent Loop Cyclophilin From Caenorhabditis Elegans Length = 173

Iteration: 1
 Score =  199 bits (505), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 97/173 (56%), Positives = 125/173 (72%), Gaps = 2/173 (1%)
Query: 1   MARPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVR 60
           M+R + F DI+IG +  GRI++E+Y+DV+PKTA NFRALCTGE GIG  +G PLH+KG +
Sbjct: 1   MSRSKVFFDITIGGKASGRIVMELYDDVVPKTAGNFRALCTGENGIG-KSGKPLHFKGSK 59
Query: 61  FHRVIKGFMIQXXXXXXXXXXXXESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQF 120
           FHR+I  FMIQ            ESIYG KF DENF+ KH   G+LSMANAGPNTNGSQF
Sbjct: 60  FHRIIPNFMIQGGDFTRGNGTGGESIYGEKFPDENFKEKHTGPGVLSMANAGPNTNGSQF 119
Query: 121 FITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTITDCGEI 173
           F+ T +T  LDGKHVVFGRV++G+ VV+++E   +  +  P+ D  I DCG++
Sbjct: 120 FLCTVKTEWLDGKHVVFGRVVEGLDVVKAVESNGS-QSGKPVKDCMIADCGQL 171

>pdb|2WFJ|A Chain A, Atomic Resolution Crystal Structure Of The Ppiase Domain Of Human Cyclophilin G In Complex With Cyclosporin A Length = 179

Iteration: 1
 Score =  194 bits (494), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 96/173 (55%), Positives = 117/173 (67%)
Query: 1   MARPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVR 60
           + RPRCF DI+I  +  GR++ E+++DV PKT ENFR LCTGEKG G +T  PLHYK   
Sbjct: 7   VQRPRCFFDIAINNQPAGRVVFELFSDVCPKTCENFRCLCTGEKGTGKSTQKPLHYKSCL 66
Query: 61  FHRVIKGFMIQXXXXXXXXXXXXESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQF 120
           FHRV+K FM+Q            ESIYG  FEDE+F +KH ++ +LSMAN G +TNGSQF
Sbjct: 67  FHRVVKDFMVQGGDFSEGNGRGGESIYGGFFEDESFAVKHNKEFLLSMANRGKDTNGSQF 126
Query: 121 FITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTITDCGEI 173
           FITT  T HLDG HVVFG+VI G  VVR IE+  T     P A+V I  CGE+
Sbjct: 127 FITTKPTPHLDGHHVVFGQVISGQEVVREIENQKTDAASKPFAEVRILSCGEL 179

>pdb|2WFI|A Chain A, Atomic Resolution Crystal Structure Of The Ppiase Domain Of Human Cyclophilin G Length = 179

Iteration: 1
 Score =  194 bits (494), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 96/173 (55%), Positives = 117/173 (67%)
Query: 1   MARPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVR 60
           + RPRCF DI+I  +  GR++ E+++DV PKT ENFR LCTGEKG G +T  PLHYK   
Sbjct: 7   VQRPRCFFDIAINNQPAGRVVFELFSDVCPKTCENFRCLCTGEKGTGKSTQKPLHYKSXL 66
Query: 61  FHRVIKGFMIQXXXXXXXXXXXXESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQF 120
           FHRV+K FM+Q            ESIYG  FEDE+F +KH ++ +LSMAN G +TNGSQF
Sbjct: 67  FHRVVKDFMVQGGDFSEGNGRGGESIYGGFFEDESFAVKHNKEFLLSMANRGKDTNGSQF 126
Query: 121 FITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTITDCGEI 173
           FITT  T HLDG HVVFG+VI G  VVR IE+  T     P A+V I  CGE+
Sbjct: 127 FITTKPTPHLDGHHVVFGQVISGQEVVREIENQKTDAASKPFAEVRILSCGEL 179

>pdb|2GW2|A Chain A, Crystal Structure Of The Peptidyl-Prolyl Isomerase Domain Of Human Cyclophilin G Length = 198

Iteration: 1
 Score =  192 bits (488), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 96/173 (55%), Positives = 115/173 (66%)
Query: 1   MARPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVR 60
           + RPRCF DI+I  +  GR++ E+++DV PKT ENFR LCTGEKG G +T  PLHYK   
Sbjct: 24  VQRPRCFFDIAINNQPAGRVVFELFSDVCPKTCENFRCLCTGEKGTGKSTQKPLHYKSCL 83
Query: 61  FHRVIKGFMIQXXXXXXXXXXXXESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQF 120
           FHRV+K FM+Q            ESIYG  FEDE+F +KH    +LSMAN G +TNGSQF
Sbjct: 84  FHRVVKDFMVQGGDFSEGNGRGGESIYGGFFEDESFAVKHNAAFLLSMANRGKDTNGSQF 143
Query: 121 FITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTITDCGEI 173
           FITT  T HLDG HVVFG+VI G  VVR IE+  T     P A+V I  CGE+
Sbjct: 144 FITTKPTPHLDGHHVVFGQVISGQEVVREIENQKTDAASKPFAEVRILSCGEL 196

>pdb|1C5F|A Chain A, Crystal Structure Of The Cyclophilin-Like Domain From Brugia Malayi Complexed With Cyclosporin A Length = 177

Iteration: 1
 Score =  187 bits (474), Expect = 9e-48,   Method: Compositional matrix adjust.
 Identities = 92/171 (53%), Positives = 114/171 (66%)
Query: 3   RPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFH 62
           R R FLD++I   L GRI++E+YND+ P+T  NF  LCTG  G G  +G PLHYKG  FH
Sbjct: 6   RRRVFLDVTIDGNLAGRIVMELYNDIAPRTCNNFLMLCTGMAGTGKISGKPLHYKGSTFH 65
Query: 63  RVIKGFMIQXXXXXXXXXXXXESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFFI 122
           RVIK FMIQ            ESIYG  F+DE F +KH+   ++SMAN GPNTNGSQFFI
Sbjct: 66  RVIKNFMIQGGDFTKGDGTGGESIYGGMFDDEEFVMKHDEPFVVSMANKGPNTNGSQFFI 125
Query: 123 TTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTITDCGEI 173
           TTT   HL+  HVVFG+V+ G  VV  IE++ T   + P+ADV I +CGE+
Sbjct: 126 TTTPAPHLNNIHVVFGKVVSGQEVVTKIEYLKTNSKNRPLADVVILNCGEL 176

>pdb|2HQJ|A Chain A, Cyclophilin From Leishmania Major Length = 183

Iteration: 1
 Score =  181 bits (460), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 96/176 (54%), Positives = 114/176 (64%), Gaps = 5/176 (2%)
Query: 1   MARPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVR 60
           M  P+ F DISI  +  GRI++E+Y D +PKTAENFRALCTGEKG G  +G PLHYK   
Sbjct: 5   MTNPKVFFDISIDNKAAGRIVMELYADTVPKTAENFRALCTGEKGKG-RSGKPLHYKSSV 63
Query: 61  FHRVIKGFMIQXXXXXXXXXXXXESIYGLKFEDENFELK---HERKGMLSMANAGPNTNG 117
           FHRVI  FMIQ            ESIYG  F DE+F  K   H   G LSMANAGPNTNG
Sbjct: 64  FHRVIPNFMIQGGDFTRGNGTGGESIYGTTFRDESFSGKAGRHTGLGCLSMANAGPNTNG 123
Query: 118 SQFFITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTITDCGEI 173
           SQFFI T  T  LDGKHVVFGRVI G+ VV+ +E + +       + + ++DCGE+
Sbjct: 124 SQFFICTAATPWLDGKHVVFGRVIDGLDVVKKVERLGSSSGKTR-SRIVVSDCGEV 178

>pdb|2HE9|A Chain A, Structure Of The Peptidylprolyl Isomerase Domain Of The Human Nk-Tumour Recognition Protein Length = 192

Iteration: 1
 Score =  176 bits (446), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 90/168 (53%), Positives = 109/168 (64%)
Query: 4   PRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHR 63
           P+C  DI I  E  GRI+ ++++D+ PKT +NF  LC+GEKG+G  TG  L YKG  FHR
Sbjct: 20  PQCHFDIEINREPVGRIMFQLFSDICPKTCKNFLCLCSGEKGLGKTTGKKLCYKGSTFHR 79
Query: 64  VIKGFMIQXXXXXXXXXXXXESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFFIT 123
           V+K FMIQ            ESIYG  F+DENF LKH+R  +LSMAN G +TNGSQFFIT
Sbjct: 80  VVKNFMIQGGDFSEGNGKGGESIYGGYFKDENFILKHDRAFLLSMANRGKHTNGSQFFIT 139
Query: 124 TTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTITDCG 171
           T    HLDG HVVFG VI G  V+  IE++ T     P ADV + DCG
Sbjct: 140 TKPAPHLDGVHVVFGLVISGFEVIEQIENLKTDAASRPYADVRVIDCG 187

>pdb|1QOI|A Chain A, U4U6 SNRNP-Specific Cyclophilin Snucyp-20 Length = 177

Iteration: 1
 Score =  176 bits (445), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 90/170 (52%), Positives = 113/170 (66%), Gaps = 3/170 (1%)
Query: 4   PRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHR 63
           P  F D+SIG +  GR+ +E++ DV+PKTAENFR  CTGE       GVP+ YKG  FHR
Sbjct: 11  PVVFFDVSIGGQEVGRMKIELFADVVPKTAENFRQFCTGEFR---KDGVPIGYKGSTFHR 67
Query: 64  VIKGFMIQXXXXXXXXXXXXESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFFIT 123
           VIK FMIQ             SIY   F DENF+L+H   G+LSMAN+GP+TNG QFFIT
Sbjct: 68  VIKDFMIQGGDFVNGDGTGVASIYRGPFADENFKLRHSAPGLLSMANSGPSTNGCQFFIT 127
Query: 124 TTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTITDCGEI 173
            ++   LDGKHVVFG++I G+ V+R IE+V TG N+ P   V I+ CGE+
Sbjct: 128 CSKCDWLDGKHVVFGKIIDGLLVMRKIENVPTGPNNKPKLPVVISQCGEM 177

>pdb|2PLU|A Chain A, Crystal Structure Of Cryptosporidium Parvum Cyclophilin Type Peptidyl-Prolyl Cis-Trans Isomerase Cgd2_4120 Length = 186

Iteration: 1
 Score =  173 bits (438), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 94/170 (55%), Positives = 109/170 (64%), Gaps = 2/170 (1%)
Query: 2   ARPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRF 61
             P  + DISIG    GRI +E++ D +P TAENFRALCTGEKG+G  +G PL Y G  F
Sbjct: 18  GNPVVYFDISIGQTPAGRITMELFADKVPITAENFRALCTGEKGMG-QSGKPLCYTGSFF 76
Query: 62  HRVIKGFMIQXXXXXXXXXXXXESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFF 121
           HR+I  FMIQ            ESIYG KF DENF   H+   +LSMANAGPNTNGSQFF
Sbjct: 77  HRIIPQFMIQGGDFTRGDGTGGESIYGSKFRDENFVYTHDAPFLLSMANAGPNTNGSQFF 136
Query: 122 ITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTITDCG 171
           ITT     LDGKHVVFG+V++GM VV+SIE   +  N  P   V IT  G
Sbjct: 137 ITTVPCPWLDGKHVVFGKVLEGMEVVKSIEKCGS-QNGKPTKSVCITASG 185

>pdb|4FRV|A Chain A, Crystal Structure Of Mutated Cyclophilin B That Causes Hyperelastosis Cutis In The American Quarter Horse Length = 185

Iteration: 1
 Score =  172 bits (437), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 88/169 (52%), Positives = 112/169 (66%), Gaps = 8/169 (4%)
Query: 5   RCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRV 64
           + + D+ IG E  GR+++ ++   +PKT +NF AL TGEKG G        YK  +FHRV
Sbjct: 14  KVYFDLRIGDEDIGRVVIGLFGKTVPKTVDNFVALATGEKGFG--------YKDSKFHRV 65
Query: 65  IKGFMIQXXXXXXXXXXXXESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFFITT 124
           IK FMIQ            +SIYG +F DENF+LKH   G +SMANAG +TNGSQFFITT
Sbjct: 66  IKDFMIQGGDFTRGDGTGGKSIYGERFPDENFKLKHYGPGWVSMANAGKDTNGSQFFITT 125
Query: 125 TRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTITDCGEI 173
            +T+ LDGKHVVFG+V++GM VVR +E   T   D P+ DVTI DCG+I
Sbjct: 126 VKTAWLDGKHVVFGKVLEGMEVVRKVETTKTDGRDKPLKDVTIADCGKI 174

>pdb|4FRU|A Chain A, Crystal Structure Of Horse Wild-Type Cyclophilin B Length = 185

Iteration: 1
 Score =  172 bits (437), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 88/169 (52%), Positives = 112/169 (66%), Gaps = 8/169 (4%)
Query: 5   RCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRV 64
           + + D+ IG E  GR+++ ++   +PKT +NF AL TGEKG G        YK  +FHRV
Sbjct: 14  KVYFDLRIGDEDIGRVVIGLFGKTVPKTVDNFVALATGEKGFG--------YKDSKFHRV 65
Query: 65  IKGFMIQXXXXXXXXXXXXESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFFITT 124
           IK FMIQ            +SIYG +F DENF+LKH   G +SMANAG +TNGSQFFITT
Sbjct: 66  IKDFMIQGGDFTRGDGTGGKSIYGERFPDENFKLKHYGPGWVSMANAGKDTNGSQFFITT 125
Query: 125 TRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTITDCGEI 173
            +T+ LDGKHVVFG+V++GM VVR +E   T   D P+ DVTI DCG+I
Sbjct: 126 VKTAWLDGKHVVFGKVLEGMEVVRKVETTKTDGRDKPLKDVTIADCGKI 174

>pdb|2Z6W|A Chain A, Crystal Structure Of Human Cyclophilin D In Complex With Cyclosporin A Length = 165

Iteration: 1
 Score =  171 bits (434), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 91/173 (52%), Positives = 109/173 (63%), Gaps = 9/173 (5%)
Query: 1   MARPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVR 60
           M  P  +LD+    +  GR+++E+  DV+PKTAENFRALCTGEKG G        YKG  
Sbjct: 1   MGNPLVYLDVDANGKPLGRVVLELKADVVPKTAENFRALCTGEKGFG--------YKGST 52
Query: 61  FHRVIKGFMIQXXXXXXXXXXXXESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQF 120
           FHRVI  FM Q            +SIYG +F DENF LKH   G+LSMANAGPNTNGSQF
Sbjct: 53  FHRVIPSFMCQAGDFTNHNGTGGKSIYGSRFPDENFTLKHVGPGVLSMANAGPNTNGSQF 112
Query: 121 FITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTITDCGEI 173
           FI T +T  LDGKHVVFG VI+GM VV+ IE   +         + ITDCG++
Sbjct: 113 FICTIKTDWLDGKHVVFGHVIEGMDVVKKIESFGSKSGRTS-KKIVITDCGQL 164

>pdb|3ICH|A Chain A, Crystal Structure Of Cyclophilin B At 1.2 A Resolution Length = 188

Iteration: 1
 Score =  171 bits (432), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 88/169 (52%), Positives = 110/169 (65%), Gaps = 8/169 (4%)
Query: 5   RCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRV 64
           + + D+ IG E  GR+I  ++   +PKT +NF AL TGEKG G        YK  +FHRV
Sbjct: 17  KVYFDLRIGDEDVGRVIFGLFGKTVPKTVDNFVALATGEKGFG--------YKNSKFHRV 68
Query: 65  IKGFMIQXXXXXXXXXXXXESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFFITT 124
           IK FMIQ            +SIYG +F DENF+LKH   G +SMANAG +TNGSQFFITT
Sbjct: 69  IKDFMIQGGDFTRGDGTGGKSIYGERFPDENFKLKHYGPGWVSMANAGKDTNGSQFFITT 128
Query: 125 TRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTITDCGEI 173
            +T+ LDGKHVVFG+V++GM VVR +E   T   D P+ DV I DCG+I
Sbjct: 129 VKTAWLDGKHVVFGKVLEGMEVVRKVESTKTDSRDKPLKDVIIADCGKI 177

>pdb|1CYN|A Chain A, Cyclophilin B Complexed With [d-(Cholinylester)ser8]-Cyclosporin Length = 178

Iteration: 1
 Score =  170 bits (431), Expect = 8e-43,   Method: Compositional matrix adjust.
 Identities = 88/169 (52%), Positives = 110/169 (65%), Gaps = 8/169 (4%)
Query: 5   RCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRV 64
           + + D+ IG E  GR+I  ++   +PKT +NF AL TGEKG G        YK  +FHRV
Sbjct: 7   KVYFDLRIGDEDVGRVIFGLFGKTVPKTVDNFVALATGEKGFG--------YKNSKFHRV 58
Query: 65  IKGFMIQXXXXXXXXXXXXESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFFITT 124
           IK FMIQ            +SIYG +F DENF+LKH   G +SMANAG +TNGSQFFITT
Sbjct: 59  IKDFMIQGGDFTRGDGTGGKSIYGERFPDENFKLKHYGPGWVSMANAGKDTNGSQFFITT 118
Query: 125 TRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTITDCGEI 173
            +T+ LDGKHVVFG+V++GM VVR +E   T   D P+ DV I DCG+I
Sbjct: 119 VKTAWLDGKHVVFGKVLEGMEVVRKVESTKTDSRDKPLKDVIIADCGKI 167

>pdb|3RDD|A Chain A, Human Cyclophilin A Complexed With An Inhibitor Length = 184

Iteration: 1
 Score =  170 bits (431), Expect = 8e-43,   Method: Compositional matrix adjust.
 Identities = 91/173 (52%), Positives = 110/173 (63%), Gaps = 9/173 (5%)
Query: 1   MARPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVR 60
           M  P  F DI++  E  GR+  E++ D +PKTAENFRAL TGEKG G        YKG  
Sbjct: 20  MVNPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFG--------YKGSC 71
Query: 61  FHRVIKGFMIQXXXXXXXXXXXXESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQF 120
           FHR+I GFM Q            +SIYG KFEDENF LKH   G+LSMANAGPNTNGSQF
Sbjct: 72  FHRIIPGFMCQGGDFTRHNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQF 131
Query: 121 FITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTITDCGEI 173
           FI T +T  LDGKHVVFG+V +GM +V ++E   +  N      +TI DCG++
Sbjct: 132 FICTAKTEWLDGKHVVFGKVKEGMNIVEAMERFGS-RNGKTSKKITIADCGQL 183

>pdb|2WLW|A Chain A, Structure Of The N-Terminal Capsid Domain Of Hiv-2 Length = 165

Iteration: 1
 Score =  170 bits (431), Expect = 9e-43,   Method: Compositional matrix adjust.
 Identities = 91/173 (52%), Positives = 110/173 (63%), Gaps = 9/173 (5%)
Query: 1   MARPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVR 60
           M  P  F DI++  E  GR+  E++ D +PKTAENFRAL TGEKG G        YKG  
Sbjct: 1   MVNPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFG--------YKGSC 52
Query: 61  FHRVIKGFMIQXXXXXXXXXXXXESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQF 120
           FHR+I GFM Q            +SIYG KFEDENF LKH   G+LSMANAGPNTNGSQF
Sbjct: 53  FHRIIPGFMCQGGNFTHHNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQF 112
Query: 121 FITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTITDCGEI 173
           FI T +T  LDGKHVVFG+V +GM +V ++E   +  N      +TI DCG++
Sbjct: 113 FICTAKTEWLDGKHVVFGKVKEGMNIVEAMERFGS-RNGKTSKKITIADCGQL 164

>pdb|2XGY|B Chain B, Complex Of Rabbit Endogenous Lentivirus (Relik)capsid With Cyclophilin A Length = 173

Iteration: 1
 Score =  170 bits (430), Expect = 9e-43,   Method: Compositional matrix adjust.
 Identities = 91/173 (52%), Positives = 110/173 (63%), Gaps = 9/173 (5%)
Query: 1   MARPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVR 60
           M  P  F DI++  E  GR+  E++ D +PKTAENFRAL TGEKG G        YKG  
Sbjct: 9   MVNPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFG--------YKGSC 60
Query: 61  FHRVIKGFMIQXXXXXXXXXXXXESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQF 120
           FHR+I GFM Q            +SIYG KFEDENF LKH   G+LSMANAGPNTNGSQF
Sbjct: 61  FHRIIPGFMCQGGDFTRHNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQF 120
Query: 121 FITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTITDCGEI 173
           FI T +T  LDGKHVVFG+V +GM +V ++E   +  N      +TI DCG++
Sbjct: 121 FICTAKTEWLDGKHVVFGKVKEGMNIVEAMERFGS-RNGKTSKKITIADCGQL 172

>pdb|2RMA|A Chain A, Crystal Structures Of Cyclophilin A Complexed With Cyclosporin A And N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine Cyclosporin A Length = 165

Iteration: 1
 Score =  170 bits (430), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 91/173 (52%), Positives = 110/173 (63%), Gaps = 9/173 (5%)
Query: 1   MARPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVR 60
           M  P  F DI++  E  GR+  E++ D +PKTAENFRAL TGEKG G        YKG  
Sbjct: 1   MVNPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFG--------YKGSC 52
Query: 61  FHRVIKGFMIQXXXXXXXXXXXXESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQF 120
           FHR+I GFM Q            +SIYG KFEDENF LKH   G+LSMANAGPNTNGSQF
Sbjct: 53  FHRIIPGFMCQGGDFTRHNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQF 112
Query: 121 FITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTITDCGEI 173
           FI T +T  LDGKHVVFG+V +GM +V ++E   +  N      +TI DCG++
Sbjct: 113 FICTAKTEWLDGKHVVFGKVKEGMNIVEAMERFGS-RNGKTSKKITIADCGQL 164

>pdb|4DGD|A Chain A, Trimcyp Cyclophilin Domain From Macaca Mulatta: H70c Mutant Length = 165

Iteration: 1
 Score =  170 bits (430), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 91/173 (52%), Positives = 110/173 (63%), Gaps = 9/173 (5%)
Query: 1   MARPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVR 60
           M  P  F DI++  E  GR+  E++ D +PKTAENFRAL TGEKG G        YKG  
Sbjct: 1   MVNPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFG--------YKGSC 52
Query: 61  FHRVIKGFMIQXXXXXXXXXXXXESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQF 120
           FHR+I GFM Q            +SIYG KFEDENF LKH   G+LSMANAGPNTNGSQF
Sbjct: 53  FHRIIPGFMCQGGNFTHCNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQF 112
Query: 121 FITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTITDCGEI 173
           FI T +T  LDGKHVVFG+V +GM +V ++E   +  N      +TI DCG++
Sbjct: 113 FICTAKTEWLDGKHVVFGKVKEGMNIVEAMERFGS-RNGKTSKKITIADCGQL 164

>pdb|1M9E|A Chain A, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N- Terminal Domain (1-146) M-Type H87a Complex. Length = 164

Iteration: 1
 Score =  170 bits (430), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 91/173 (52%), Positives = 110/173 (63%), Gaps = 9/173 (5%)
Query: 1   MARPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVR 60
           M  P  F DI++  E  GR+  E++ D +PKTAENFRAL TGEKG G        YKG  
Sbjct: 1   MVNPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFG--------YKGSC 52
Query: 61  FHRVIKGFMIQXXXXXXXXXXXXESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQF 120
           FHR+I GFM Q            +SIYG KFEDENF LKH   G+LSMANAGPNTNGSQF
Sbjct: 53  FHRIIPGFMCQGGDFTRHNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQF 112
Query: 121 FITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTITDCGEI 173
           FI T +T  LDGKHVVFG+V +GM +V ++E   +  N      +TI DCG++
Sbjct: 113 FICTAKTEWLDGKHVVFGKVKEGMNIVEAMERFGS-RNGKTSKKITIADCGQL 164

>pdb|3R49|A Chain A, Human Cyclophilin D Complexed With Quinolin-8-Amine Length = 166

Iteration: 1
 Score =  169 bits (429), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 90/172 (52%), Positives = 108/172 (62%), Gaps = 9/172 (5%)
Query: 2   ARPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRF 61
             P  +LD+    +  GR+++E+  DV+PKTAENFRALCTGEKG G        YKG  F
Sbjct: 3   GNPLVYLDVDANGKPLGRVVLELKADVVPKTAENFRALCTGEKGFG--------YKGSTF 54
Query: 62  HRVIKGFMIQXXXXXXXXXXXXESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFF 121
           HRVI  FM Q            +SIYG +F DENF LKH   G+LSMANAGPNTNGSQFF
Sbjct: 55  HRVIPSFMCQAGDFTNHNGTGGKSIYGSRFPDENFTLKHVGPGVLSMANAGPNTNGSQFF 114
Query: 122 ITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTITDCGEI 173
           I T +T  LDGKHVVFG VI+GM VV+ IE   +         + ITDCG++
Sbjct: 115 ICTIKTDWLDGKHVVFGHVIEGMDVVKKIESFGSKSGRTS-KKIVITDCGQL 165

>pdb|2BIT|X Chain X, Crystal Structure Of Human Cyclophilin D At 1.7 A Resolution Length = 165

Iteration: 1
 Score =  169 bits (429), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 90/172 (52%), Positives = 108/172 (62%), Gaps = 9/172 (5%)
Query: 2   ARPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRF 61
             P  +LD+    +  GR+++E+  DV+PKTAENFRALCTGEKG G        YKG  F
Sbjct: 2   GNPLVYLDVDANGKPLGRVVLELKADVVPKTAENFRALCTGEKGFG--------YKGSTF 53
Query: 62  HRVIKGFMIQXXXXXXXXXXXXESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFF 121
           HRVI  FM Q            +SIYG +F DENF LKH   G+LSMANAGPNTNGSQFF
Sbjct: 54  HRVIPSFMCQAGDFTNHNGTGGKSIYGSRFPDENFTLKHVGPGVLSMANAGPNTNGSQFF 113
Query: 122 ITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTITDCGEI 173
           I T +T  LDGKHVVFG VI+GM VV+ IE   +         + ITDCG++
Sbjct: 114 ICTIKTDWLDGKHVVFGHVIEGMDVVKKIESFGSKSGRTS-KKIVITDCGQL 164

>pdb|3QYU|A Chain A, Crystal Structure Of Human Cyclophilin D At 1.54 A Resolution At Room Temperature Length = 164

Iteration: 1
 Score =  169 bits (428), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 90/172 (52%), Positives = 108/172 (62%), Gaps = 9/172 (5%)
Query: 2   ARPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRF 61
             P  +LD+    +  GR+++E+  DV+PKTAENFRALCTGEKG G        YKG  F
Sbjct: 1   GNPLVYLDVDANGKPLGRVVLELKADVVPKTAENFRALCTGEKGFG--------YKGSTF 52
Query: 62  HRVIKGFMIQXXXXXXXXXXXXESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFF 121
           HRVI  FM Q            +SIYG +F DENF LKH   G+LSMANAGPNTNGSQFF
Sbjct: 53  HRVIPSFMCQAGDFTNHNGTGGKSIYGSRFPDENFTLKHVGPGVLSMANAGPNTNGSQFF 112
Query: 122 ITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTITDCGEI 173
           I T +T  LDGKHVVFG VI+GM VV+ IE   +         + ITDCG++
Sbjct: 113 ICTIKTDWLDGKHVVFGHVIEGMDVVKKIESFGSKSGRTS-KKIVITDCGQL 163

>pdb|3K0O|A Chain A, Room Temperature Structure Of Cypa Mutant Ser99thr Length = 165

Iteration: 1
 Score =  169 bits (427), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 90/173 (52%), Positives = 110/173 (63%), Gaps = 9/173 (5%)
Query: 1   MARPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVR 60
           M  P  F DI++  E  GR+  E++ D +PKTAENFRAL TGEKG G        YKG  
Sbjct: 1   MVNPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFG--------YKGSC 52
Query: 61  FHRVIKGFMIQXXXXXXXXXXXXESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQF 120
           FHR+I GFM Q            +SIYG KFEDENF LKH   G+L+MANAGPNTNGSQF
Sbjct: 53  FHRIIPGFMCQGGDFTRHNGTGGKSIYGEKFEDENFILKHTGPGILTMANAGPNTNGSQF 112
Query: 121 FITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTITDCGEI 173
           FI T +T  LDGKHVVFG+V +GM +V ++E   +  N      +TI DCG++
Sbjct: 113 FICTAKTEWLDGKHVVFGKVKEGMNIVEAMERFGS-RNGKTSKKITIADCGQL 164

>pdb|3K0R|A Chain A, Cryogenic Structure Of Cypa Mutant Arg55lys Length = 165

Iteration: 1
 Score =  169 bits (427), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 90/173 (52%), Positives = 110/173 (63%), Gaps = 9/173 (5%)
Query: 1   MARPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVR 60
           M  P  F DI++  E  GR+  E++ D +PKTAENFRAL TGEKG G        YKG  
Sbjct: 1   MVNPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFG--------YKGSC 52
Query: 61  FHRVIKGFMIQXXXXXXXXXXXXESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQF 120
           FH++I GFM Q            +SIYG KFEDENF LKH   G+LSMANAGPNTNGSQF
Sbjct: 53  FHKIIPGFMCQGGDFTRHNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQF 112
Query: 121 FITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTITDCGEI 173
           FI T +T  LDGKHVVFG+V +GM +V ++E   +  N      +TI DCG++
Sbjct: 113 FICTAKTEWLDGKHVVFGKVKEGMNIVEAMERFGS-RNGKTSKKITIADCGQL 164

>pdb|1QNG|A Chain A, Plasmodium Falciparum Cyclophilin Complexed With Cyclosporin A Length = 170

Iteration: 1
 Score =  168 bits (426), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 93/171 (54%), Positives = 109/171 (63%), Gaps = 3/171 (1%)
Query: 3   RPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFH 62
           R + F DISI     GRII E+++D+ P+T ENFRALCTGEK IG + G  LHYK   FH
Sbjct: 3   RSKVFFDISIDNSNAGRIIFELFSDITPRTCENFRALCTGEK-IG-SRGKNLHYKNSIFH 60
Query: 63  RVIKGFMIQXXXXXXXXXXXXESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFFI 122
           R+I  FM Q            ESIYG  F DENF +KH++ G+LSMANAGPNTN SQFFI
Sbjct: 61  RIIPQFMCQGGDITNGNGSGGESIYGRSFTDENFNMKHDQPGLLSMANAGPNTNSSQFFI 120
Query: 123 TTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTITDCGEI 173
           T      LDGKHVVFG+VI+GM VVR +E             V ITDCGE+
Sbjct: 121 TLVPCPWLDGKHVVFGKVIEGMNVVREMEKEGAKSGYVK-RSVVITDCGEL 170

>pdb|2CFE|A Chain A, The 1.5 A Crystal Structure Of The Malassezia Sympodialis Mala S 6 Allergen, A Member Of The Cyclophilin Pan- Allergen Family Length = 162

Iteration: 1
 Score =  168 bits (425), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 90/165 (54%), Positives = 106/165 (64%), Gaps = 9/165 (5%)
Query: 7   FLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRVIK 66
           F DI+      G I  ++++DV+PKTA NFRALCTGEKG G        Y G  FHRVI 
Sbjct: 5   FFDITKNGAPLGTIKFKLFDDVVPKTAANFRALCTGEKGFG--------YAGSHFHRVIP 56
Query: 67  GFMIQXXXXXXXXXXXXESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFFITTTR 126
            FM+Q            +SIYG KF DENF+LKH + G+LSMANAGPNTNGSQFFITT  
Sbjct: 57  DFMLQGGDFTAGNGTGGKSIYGAKFADENFQLKHNKPGLLSMANAGPNTNGSQFFITTVV 116
Query: 127 TSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTITDCG 171
           TS LDGKHVVFG VI GM VV++IE   +G    P + + I  CG
Sbjct: 117 TSWLDGKHVVFGEVIDGMNVVKAIEAEGSGSGK-PRSRIEIAKCG 160

>pdb|1BCK|A Chain A, Human Cyclophilin A Complexed With 2-Thr Cyclosporin Length = 165

Iteration: 1
 Score =  168 bits (425), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 90/170 (52%), Positives = 109/170 (64%), Gaps = 9/170 (5%)
Query: 4   PRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHR 63
           P  F DI++  E  GR+  E++ D +PKTAENFRAL TGEKG G        YKG  FHR
Sbjct: 4   PTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFG--------YKGSCFHR 55
Query: 64  VIKGFMIQXXXXXXXXXXXXESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFFIT 123
           +I GFM Q            +SIYG KFEDENF LKH   G+LSMANAGPNTNGSQFFI 
Sbjct: 56  IIPGFMCQGGDFTRHNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFFIC 115
Query: 124 TTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTITDCGEI 173
           T +T  LDGKHVVFG+V +GM +V ++E   +  N      +TI DCG++
Sbjct: 116 TAKTEWLDGKHVVFGKVKEGMNIVEAMERFGS-RNGKTSKKITIADCGQL 164

>pdb|5CYH|A Chain A, Cyclophilin A Complexed With Dipeptide Gly-Pro Length = 164

Iteration: 1
 Score =  168 bits (425), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 90/170 (52%), Positives = 109/170 (64%), Gaps = 9/170 (5%)
Query: 4   PRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHR 63
           P  F DI++  E  GR+  E++ D +PKTAENFRAL TGEKG G        YKG  FHR
Sbjct: 3   PTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFG--------YKGSCFHR 54
Query: 64  VIKGFMIQXXXXXXXXXXXXESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFFIT 123
           +I GFM Q            +SIYG KFEDENF LKH   G+LSMANAGPNTNGSQFFI 
Sbjct: 55  IIPGFMCQGGDFTRHNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFFIC 114
Query: 124 TTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTITDCGEI 173
           T +T  LDGKHVVFG+V +GM +V ++E   +  N      +TI DCG++
Sbjct: 115 TAKTEWLDGKHVVFGKVKEGMNIVEAMERFGS-RNGKTSKKITIADCGQL 163

>pdb|2X2A|A Chain A, Free Acetyl-Cypa Trigonal Form Length = 165

Iteration: 1
 Score =  167 bits (424), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 90/173 (52%), Positives = 109/173 (63%), Gaps = 9/173 (5%)
Query: 1   MARPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVR 60
           M  P  F DI++  E  GR+  E++ D +PKTAENFRAL TGEKG G        YKG  
Sbjct: 1   MVNPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFG--------YKGSC 52
Query: 61  FHRVIKGFMIQXXXXXXXXXXXXESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQF 120
           FHR+I GFM Q            +SIYG KFEDENF LKH   G+LSMANAGPNTNGSQF
Sbjct: 53  FHRIIPGFMCQGGDFTRHNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQF 112
Query: 121 FITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTITDCGEI 173
           FI T +T  LDG HVVFG+V +GM +V ++E   +  N      +TI DCG++
Sbjct: 113 FICTAKTKWLDGXHVVFGKVKEGMNIVEAMERFGS-RNGKTSKKITIADCGQL 164

>pdb|2X2C|K Chain K, Acetyl-Cypa:cyclosporine Complex Length = 165

Iteration: 1
 Score =  167 bits (424), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 90/173 (52%), Positives = 109/173 (63%), Gaps = 9/173 (5%)
Query: 1   MARPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVR 60
           M  P  F DI++  E  GR+  E++ D +PKTAENFRAL TGEKG G        YKG  
Sbjct: 1   MVNPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFG--------YKGSC 52
Query: 61  FHRVIKGFMIQXXXXXXXXXXXXESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQF 120
           FHR+I GFM Q            +SIYG KFEDENF LKH   G+LSMANAGPNTNGSQF
Sbjct: 53  FHRIIPGFMCQGGDFTRHNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQF 112
Query: 121 FITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTITDCGEI 173
           FI T +T  LDG HVVFG+V +GM +V ++E   +  N      +TI DCG++
Sbjct: 113 FICTAKTEWLDGXHVVFGKVKEGMNIVEAMERFGS-RNGKTSKKITIADCGQL 164

>pdb|2CK1|A Chain A, The Structure Of Oxidised Cyclophilin A From S. Mansoni Length = 172

Iteration: 1
 Score =  167 bits (424), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 90/171 (52%), Positives = 112/171 (65%), Gaps = 11/171 (6%)
Query: 4   PRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHR 63
           PR F DI IG    GRI++E+ +D++P+TAENFRALCTGE+G G        Y    FHR
Sbjct: 11  PRVFFDIRIGNGDAGRIVMELRSDIVPRTAENFRALCTGERGFG--------YHNCCFHR 62
Query: 64  VIKGFMIQXXXXXXXXXXXXESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFFIT 123
           VI  FM Q            +SIYG KF+DENF+L+HE  G+LSMAN+GPNTNGSQFFI 
Sbjct: 63  VIPQFMCQGGDFVKGDGTGGKSIYGRKFDDENFQLRHEGFGVLSMANSGPNTNGSQFFIC 122
Query: 124 TTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIAD-VTITDCGEI 173
           TT+   LDGKHVVFGRV+ G  VV+ +E V  G     + + V I+ CGE+
Sbjct: 123 TTKCDWLDGKHVVFGRVVDGQNVVKKMESV--GSKSGKVKEPVIISRCGEL 171

>pdb|2ALF|A Chain A, Crystal Structure Of Human Cypa Mutant K131a Length = 164

Iteration: 1
 Score =  167 bits (422), Expect = 9e-42,   Method: Compositional matrix adjust.
 Identities = 90/170 (52%), Positives = 108/170 (63%), Gaps = 9/170 (5%)
Query: 4   PRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHR 63
           P  F DI++  E  GR+  E++ D +PKTAENFRAL TGEKG G        YKG  FHR
Sbjct: 3   PTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFG--------YKGSCFHR 54
Query: 64  VIKGFMIQXXXXXXXXXXXXESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFFIT 123
           +I GFM Q            +SIYG KFEDENF LKH   G+LSMANAGPNTNGSQFFI 
Sbjct: 55  IIPGFMCQGGDFTRHNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFFIC 114
Query: 124 TTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTITDCGEI 173
           T +T  LDGKHVVFG V +GM +V ++E   +  N      +TI DCG++
Sbjct: 115 TAKTKWLDGKHVVFGAVKEGMNIVEAMERFGS-RNGKTSKKITIADCGQL 163

>pdb|2RMC|A Chain A, Crystal Structure Of Murine Cyclophilin C Complexed With Immunosuppressive Drug Cyclosporin A Length = 182

Iteration: 1
 Score =  166 bits (421), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 90/169 (53%), Positives = 110/169 (65%), Gaps = 8/169 (4%)
Query: 5   RCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRV 64
           + F D+ IG +  GRI++ ++ +V+PKT ENF AL TGEKG G        YKG  FHRV
Sbjct: 9   KVFFDVRIGDKDVGRIVIGLFGNVVPKTVENFVALATGEKGYG--------YKGSIFHRV 60
Query: 65  IKGFMIQXXXXXXXXXXXXESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFFITT 124
           IK FMIQ             SIYG  F DENF+LKH   G +SMANAGP+TNGSQFFIT 
Sbjct: 61  IKDFMIQGGDFTARDGTGGMSIYGETFPDENFKLKHYGIGWVSMANAGPDTNGSQFFITL 120
Query: 125 TRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTITDCGEI 173
           T+ + LDGKHVVFG+V+ GM VV SIE   T  +D P+ D TI + G+I
Sbjct: 121 TKPTWLDGKHVVFGKVLDGMTVVHSIELQATDGHDRPLTDCTIVNSGKI 169

>pdb|2X83|B Chain B, Evolutionary Basis Of Hiv Restriction By The Antiretroviral Trimcyp Length = 163

Iteration: 1
 Score =  166 bits (420), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 89/170 (52%), Positives = 109/170 (64%), Gaps = 9/170 (5%)
Query: 4   PRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHR 63
           P  F DI++  E  GR+  E++ D +PKTAENFRAL TGEKG G        YKG  FHR
Sbjct: 3   PTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFG--------YKGSCFHR 54
Query: 64  VIKGFMIQXXXXXXXXXXXXESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFFIT 123
           +I GFM Q            +SIYG KFEDENF LKH   G+LSMANAGPNTNGSQFFI 
Sbjct: 55  IIPGFMCQGGDFTHHNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFFIC 114
Query: 124 TTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTITDCGEI 173
           T +T  LDGKHVVFG+V +GM +V +++   +  N      +TI DCG++
Sbjct: 115 TAKTEWLDGKHVVFGKVKEGMNIVEAMKRFGS-RNGKTSKKITIADCGQL 163

>pdb|1QNH|A Chain A, Plasmodium Falciparum Cyclophilin (Double Mutant) Complexed With Cyclosporin A Length = 170

Iteration: 1
 Score =  166 bits (419), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 92/170 (54%), Positives = 107/170 (62%), Gaps = 3/170 (1%)
Query: 3   RPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFH 62
           R + F DISI     GRII E+++D+ P+T ENFRALCTGEK IG + G  LHYK   FH
Sbjct: 3   RSKVFFDISIDNSNAGRIIFELFSDITPRTCENFRALCTGEK-IG-SRGKNLHYKNSIFH 60
Query: 63  RVIKGFMIQXXXXXXXXXXXXESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFFI 122
           R+I  FM Q            ESIYG  F DENF +KH++ G+LSMANAGPNTN SQF I
Sbjct: 61  RIIPQFMCQGGDITNGNGSGGESIYGRSFTDENFNMKHDQPGLLSMANAGPNTNSSQFLI 120
Query: 123 TTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTITDCGE 172
           T      LDGKHVVFG+VI+GM VVR +E             V ITDCGE
Sbjct: 121 TLVPCPWLDGKHVVFGKVIEGMNVVREMEKEGAKSGYVK-RSVVITDCGE 169

>pdb|2ESL|A Chain A, Human Cyclophilin C In Complex With Cyclosporin A Length = 190

Iteration: 1
 Score =  165 bits (418), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 89/169 (52%), Positives = 110/169 (65%), Gaps = 8/169 (4%)
Query: 5   RCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRV 64
           + F D+ IG +  GRI++ ++  V+PKT ENF AL TGEKG G        YKG +FHRV
Sbjct: 17  KVFFDVRIGDKDVGRIVIGLFGKVVPKTVENFVALATGEKGYG--------YKGSKFHRV 68
Query: 65  IKGFMIQXXXXXXXXXXXXESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFFITT 124
           IK FMIQ             SIYG  F DENF+LKH   G +SMANAGP+TNGSQFFIT 
Sbjct: 69  IKDFMIQGGDITTGDGTGGVSIYGETFPDENFKLKHYGIGWVSMANAGPDTNGSQFFITL 128
Query: 125 TRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTITDCGEI 173
           T+ + LDGKHVVFG+VI GM VV SIE   T  +D P+ + +I + G+I
Sbjct: 129 TKPTWLDGKHVVFGKVIDGMTVVHSIELQATDGHDRPLTNCSIINSGKI 177

>pdb|2X25|B Chain B, Free Acetyl-Cypa Orthorhombic Form Length = 169

Iteration: 1
 Score =  165 bits (418), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 89/170 (52%), Positives = 108/170 (63%), Gaps = 9/170 (5%)
Query: 4   PRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHR 63
           P  F DI++  E  GR+  E++ D +PKTAENFRAL TGEKG G        YKG  FHR
Sbjct: 8   PTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFG--------YKGSCFHR 59
Query: 64  VIKGFMIQXXXXXXXXXXXXESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFFIT 123
           +I GFM Q            +SIYG KFEDENF LKH   G+LSMANAGPNTNGSQFFI 
Sbjct: 60  IIPGFMCQGGDFTRHNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFFIC 119
Query: 124 TTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTITDCGEI 173
           T +T  LDG HVVFG+V +GM +V ++E   +  N      +TI DCG++
Sbjct: 120 TAKTKWLDGXHVVFGKVKEGMNIVEAMERFGS-RNGKTSKKITIADCGQL 168

>pdb|2R99|A Chain A, Crystal Structure Of Cyclophilin Abh-Like Domain Of Human Peptidylprolyl Isomerase E Isoform 1 Length = 173

Iteration: 1
 Score =  162 bits (411), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 87/171 (50%), Positives = 108/171 (63%), Gaps = 9/171 (5%)
Query: 2   ARPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRF 61
           + P+ ++DI IG +  GRI + + +DV+P TAENFR LCT EKG G        +KG  F
Sbjct: 10  SNPQVYMDIKIGNKPAGRIQMLLRSDVVPMTAENFRCLCTHEKGFG--------FKGSSF 61
Query: 62  HRVIKGFMIQXXXXXXXXXXXXESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFF 121
           HR+I  FM Q            +SIYG KF+DENF LKH   G+LSMAN+GPNTNGSQFF
Sbjct: 62  HRIIPQFMCQGGDFTNHNGTGGKSIYGKKFDDENFILKHTGPGLLSMANSGPNTNGSQFF 121
Query: 122 ITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTITDCGE 172
           +T  +T  LDGKHVVFG V +G+ V+R IE   + D   P   V I DCGE
Sbjct: 122 LTCDKTDWLDGKHVVFGEVTEGLDVLRQIEAQGSKDGK-PKQKVIIADCGE 171

>pdb|1ZMF|A Chain A, C Domain Of Human Cyclophilin-33(Hcyp33) Length = 165

Iteration: 1
 Score =  162 bits (410), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 87/171 (50%), Positives = 108/171 (63%), Gaps = 9/171 (5%)
Query: 2   ARPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRF 61
           + P+ ++DI IG +  GRI + + +DV+P TAENFR LCT EKG G        +KG  F
Sbjct: 2   SNPQVYMDIKIGNKPAGRIQMLLRSDVVPMTAENFRCLCTHEKGFG--------FKGSSF 53
Query: 62  HRVIKGFMIQXXXXXXXXXXXXESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFF 121
           HR+I  FM Q            +SIYG KF+DENF LKH   G+LSMAN+GPNTNGSQFF
Sbjct: 54  HRIIPQFMCQGGDFTNHNGTGGKSIYGKKFDDENFILKHTGPGLLSMANSGPNTNGSQFF 113
Query: 122 ITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTITDCGE 172
           +T  +T  LDGKHVVFG V +G+ V+R IE   + D   P   V I DCGE
Sbjct: 114 LTCDKTDWLDGKHVVFGEVTEGLDVLRQIEAQGSKDGK-PKQKVIIADCGE 163

>pdb|3PMP|A Chain A, Crystal Structure Of Cyclophilin A From Moniliophthora Perniciosa In Complex With Cyclosporin A Length = 164

Iteration: 1
 Score =  162 bits (410), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 86/172 (50%), Positives = 109/172 (63%), Gaps = 9/172 (5%)
Query: 2   ARPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRF 61
           A    F +ISI  + EGRI+ ++Y++ +PKTA+NFR L TG+ G G        YK   F
Sbjct: 1   AMANVFFNISINDKPEGRIVFKLYDEAVPKTAKNFRELATGQHGFG--------YKDSIF 52
Query: 62  HRVIKGFMIQXXXXXXXXXXXXESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFF 121
           HRVI  FM+Q            +SIYG KF DENF++KH + G+LSMANAG NTNGSQFF
Sbjct: 53  HRVIPQFMLQGGDFTRHNGTGGKSIYGEKFADENFQVKHTKPGLLSMANAGANTNGSQFF 112
Query: 122 ITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTITDCGEI 173
           ITT  TS LDGKHVVFG VI+G+ +VR +E   +       A + ITDCG +
Sbjct: 113 ITTVPTSWLDGKHVVFGEVIEGLDIVRKVEGKGSASGKTN-ATIKITDCGTV 163

>pdb|1XO7|A Chain A, Crystal Structure Of Cyclophilin From Trypanosoma Cruzi Length = 166

Iteration: 1
 Score =  162 bits (409), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 82/167 (49%), Positives = 110/167 (65%), Gaps = 9/167 (5%)
Query: 5   RCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRV 64
           + + DI+IG E  GR+++ ++ + +PKT ENF+ L +GE G G        YKG  FHRV
Sbjct: 7   KVYFDITIGDEPVGRVVIGLFGNDVPKTVENFKQLASGENGFG--------YKGSIFHRV 58
Query: 65  IKGFMIQXXXXXXXXXXXXESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFFITT 124
           I+ FMIQ            +SIYG +F+DEN ++KH   G +SMANAGPN+NGSQFF+TT
Sbjct: 59  IRNFMIQGGDFTNFDGTGGKSIYGTRFDDENLKIKH-FVGAVSMANAGPNSNGSQFFVTT 117
Query: 125 TRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTITDCG 171
             T  LDG+HVVFG+V++GM VV+ +E+  TG ND P   V I DCG
Sbjct: 118 APTPWLDGRHVVFGKVVEGMDVVKKVENTKTGLNDKPKKAVKINDCG 164

>pdb|3O7T|A Chain A, Crystal Structure Of Cyclophilin A From Moniliophthora Perniciosa Length = 164

Iteration: 1
 Score =  160 bits (406), Expect = 6e-40,   Method: Compositional matrix adjust.
 Identities = 85/168 (50%), Positives = 108/168 (64%), Gaps = 9/168 (5%)
Query: 6   CFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRVI 65
            F +ISI  + EGRI+ ++Y++ +PKTA+NFR L TG+ G G        YK   FHRVI
Sbjct: 6   VFFNISINDKPEGRIVFKLYDEAVPKTAKNFRELATGQHGFG--------YKDSIFHRVI 57
Query: 66  KGFMIQXXXXXXXXXXXXESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFFITTT 125
             FM+Q            +SIYG KF DENF++KH + G+LSMANAG NTNGSQFFITT 
Sbjct: 58  PQFMLQGGDFTRHNGTGGKSIYGEKFADENFQVKHTKPGLLSMANAGANTNGSQFFITTV 117
Query: 126 RTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTITDCGEI 173
            TS LDGKHVVFG VI+G+ +VR +E   +       A + ITDCG +
Sbjct: 118 PTSWLDGKHVVFGEVIEGLDIVRKVEGKGSASGKTN-ATIKITDCGTV 164

>pdb|1IST|A Chain A, Crystal Structure Of Yeast Cyclophilin A, Cpr1 Length = 162

Iteration: 1
 Score =  159 bits (403), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 81/169 (47%), Positives = 106/169 (62%), Gaps = 9/169 (5%)
Query: 5   RCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRV 64
           + + D+    +  GR++ ++YND++PKTAENFRALCTGEKG G        Y G  FHRV
Sbjct: 3   QVYFDVEADGQPIGRVVFKLYNDIVPKTAENFRALCTGEKGFG--------YAGSPFHRV 54
Query: 65  IKGFMIQXXXXXXXXXXXXESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFFITT 124
           I  FM+Q            +SIYG KF DENF+  H+R G+LSMANAGPNTNGSQFFITT
Sbjct: 55  IPDFMLQGGDFTAGNGTGGKSIYGGKFPDENFKKHHDRPGLLSMANAGPNTNGSQFFITT 114
Query: 125 TRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTITDCGEI 173
                LDGKHVVFG V+ G  +V+ +E + +  +    A + +   GE+
Sbjct: 115 VPCPWLDGKHVVFGEVVDGYDIVKKVESLGS-PSGATKARIVVAKSGEL 162

>pdb|1AWS|A Chain A, Secypa Complexed With Hagpia (Pseudo-Symmetric Monomer) Length = 164

Iteration: 1
 Score =  159 bits (403), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 87/170 (51%), Positives = 105/170 (61%), Gaps = 9/170 (5%)
Query: 4   PRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHR 63
           P  F DI++  E  GR+  E++ D +PKTAENFRAL TGEKG G        YKG  FHR
Sbjct: 3   PTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFG--------YKGSCFHR 54
Query: 64  VIKGFMIQXXXXXXXXXXXXESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFFIT 123
           +I GF  Q            +SIYG KFEDENF LKH   G+LS ANAGPNTNGSQFFI 
Sbjct: 55  IIPGFXCQGGDFTRHNGTGGKSIYGEKFEDENFILKHTGPGILSXANAGPNTNGSQFFIC 114
Query: 124 TTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTITDCGEI 173
           T +T  LDGKHVVFG+V +G  +V + E   +  N      +TI DCG++
Sbjct: 115 TAKTEWLDGKHVVFGKVKEGXNIVEAXERFGS-RNGKTSKKITIADCGQL 163

>pdb|3UCH|A Chain A, Crystal Structure Of A Hypotherical Peptidyl-Prolyl Cis-Trans Isomerase E (Ppie) From Homo Sapiens At 2.50 A Resolution Length = 174

Iteration: 1
 Score =  155 bits (393), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 85/171 (49%), Positives = 104/171 (60%), Gaps = 9/171 (5%)
Query: 2   ARPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRF 61
           + P+ + DI IG +  GRI   + +DV+P TAENFR LCT EKG G        +KG  F
Sbjct: 11  SNPQVYXDIKIGNKPAGRIQXLLRSDVVPXTAENFRCLCTHEKGFG--------FKGSSF 62
Query: 62  HRVIKGFMIQXXXXXXXXXXXXESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFF 121
           HR+I  F  Q            +SIYG KF+DENF LKH   G+LS AN+GPNTNGSQFF
Sbjct: 63  HRIIPQFXCQGGDFTNHNGTGGKSIYGKKFDDENFILKHTGPGLLSXANSGPNTNGSQFF 122
Query: 122 ITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTITDCGE 172
           +T  +T  LDGKHVVFG V +G+ V+R IE   + D   P   V I DCGE
Sbjct: 123 LTCDKTDWLDGKHVVFGEVTEGLDVLRQIEAQGSKDGK-PKQKVIIADCGE 172

>pdb|1Z81|A Chain A, Crystal Structure Of Cyclophilin From Plasmodium Yoelii Length = 229

Iteration: 1
 Score =  155 bits (391), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 79/175 (45%), Positives = 114/175 (65%), Gaps = 6/175 (3%)
Query: 2   ARPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRF 61
           + P  F+DI++G    G+   E++ +++PKT+ENFR  CTGE  +     +P+ YK   F
Sbjct: 58  SNPVVFMDINLGNNFLGKFKFELFQNIVPKTSENFRQFCTGEYKV---NNLPVGYKNTIF 114
Query: 62  HRVIKGFMIQXXXXXXXXXXXXESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFF 121
           HRVIK FMIQ             SIYG KF+DENF++KH+++G+LSMAN+GPNTNG QFF
Sbjct: 115 HRVIKEFMIQGGDFINHNGSGSLSIYGEKFDDENFDIKHDKEGLLSMANSGPNTNGCQFF 174
Query: 122 ITTTRTSHLDGKHVVFGRVI--KGMGVVRSIEHV-MTGDNDCPIADVTITDCGEI 173
           ITT +   LDGK+VVFGR+I    + +++ IE+V +T     P   + + +CGE+
Sbjct: 175 ITTKKCEWLDGKNVVFGRIIDNDSLLLLKKIENVSVTPYIYKPKIPINVVECGEL 229

>pdb|1H0P|A Chain A, Cyclophilin_5 From C. Elegans Length = 182

Iteration: 1
 Score =  150 bits (378), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 82/169 (48%), Positives = 99/169 (58%), Gaps = 8/169 (4%)
Query: 5   RCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRV 64
           R + D+ IG +  GRI++ ++   +PKTA NF  L    KG G        Y G +FHRV
Sbjct: 8   RVYFDMEIGGKPIGRIVIGLFGKTVPKTATNFIELAKKPKGEG--------YPGSKFHRV 59
Query: 65  IKGFMIQXXXXXXXXXXXXESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFFITT 124
           I  FMIQ             SIYG KF DENF+LKH   G LSMANAG +TNGSQFFITT
Sbjct: 60  IADFMIQGGDFTRGDGTGGRSIYGEKFADENFKLKHYGAGWLSMANAGADTNGSQFFITT 119
Query: 125 TRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTITDCGEI 173
            +T  LDG+HVVFG++++GM VVR IE       D P  DV I   G I
Sbjct: 120 VKTPWLDGRHVVFGKILEGMDVVRKIEQTEKLPGDRPKQDVIIAASGHI 168

>pdb|2HAQ|A Chain A, Crystal Structure Of Cyclophilin A From Leishmania Donovani Length = 172

Iteration: 1
 Score =  149 bits (376), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 84/169 (49%), Positives = 99/169 (58%), Gaps = 9/169 (5%)
Query: 5   RCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRV 64
           + + D+ I  E  GRI + ++    P T ENFR LCTGE G G        YK   FHRV
Sbjct: 13  KVYFDVMIDSEPLGRITIGLFGKDAPLTTENFRQLCTGEHGFG--------YKDSIFHRV 64
Query: 65  IKGFMIQXXXXXXXXXXXXESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFFITT 124
           I+ FMIQ            +SIYG KF DEN  +KH   G LSMANAGPNTNGSQFFITT
Sbjct: 65  IQNFMIQGGDFTNFDGTGGKSIYGEKFADENLNVKH-FVGALSMANAGPNTNGSQFFITT 123
Query: 125 TRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTITDCGEI 173
             T  LDG+HVVFG+V+ GM VV  IE   T  +D P+  V I   GE+
Sbjct: 124 APTPWLDGRHVVFGKVLDGMDVVLRIEKTKTNSHDRPVKPVKIVASGEL 172

>pdb|4I9Y|A Chain A, Structure Of The C-terminal Domain Of Nup358 Length = 167

Iteration: 1
 Score =  149 bits (375), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 82/173 (47%), Positives = 103/173 (59%), Gaps = 9/173 (5%)
Query: 1   MARPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVR 60
           M  P  F D+    E  GRI +E++++++P+TAENFRALCTGEKG G        +K   
Sbjct: 4   MTNPVVFFDVCADGEPLGRITMELFSNIVPRTAENFRALCTGEKGFG--------FKNSI 55
Query: 61  FHRVIKGFMIQXXXXXXXXXXXXESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQF 120
           FHRVI  F+ Q            +SIYG KFEDENF++KH   G+LSMAN G NTN SQF
Sbjct: 56  FHRVIPDFVCQGGDITKHDGTGGQSIYGDKFEDENFDVKHTGPGLLSMANQGQNTNNSQF 115
Query: 121 FITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTITDCGEI 173
            IT  +  HLD KHVVFG V  GM  V+ IE   +         +TIT+CG+I
Sbjct: 116 VITLKKAEHLDFKHVVFGFVKDGMDTVKKIESFGSPKGSV-CRRITITECGQI 167

>pdb|3BT8|A Chain A, Crystal Structure Of Mutant Cyclophilin (R147a) From Leishmania Donovani Length = 172

Iteration: 1
 Score =  149 bits (375), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 84/169 (49%), Positives = 98/169 (57%), Gaps = 9/169 (5%)
Query: 5   RCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRV 64
           + + D+ I  E  GRI + ++    P T ENFR LCTGE G G        YK   FHRV
Sbjct: 13  KVYFDVMIDSEPLGRITIGLFGKDAPLTTENFRQLCTGEHGFG--------YKDSIFHRV 64
Query: 65  IKGFMIQXXXXXXXXXXXXESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFFITT 124
           I+ FMIQ            +SIYG KF DEN  +KH   G LSMANAGPNTNGSQFFITT
Sbjct: 65  IQNFMIQGGDFTNFDGTGGKSIYGEKFADENLNVKH-FVGALSMANAGPNTNGSQFFITT 123
Query: 125 TRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTITDCGEI 173
             T  LDG HVVFG+V+ GM VV  IE   T  +D P+  V I   GE+
Sbjct: 124 APTPWLDGAHVVFGKVLDGMDVVLRIEKTKTNSHDRPVKPVKIVASGEL 172

>pdb|3K2C|A Chain A, Crystal Structure Of Peptidyl-Prolyl Cis-Trans Isomerase From Encephalitozoon Cuniculi At 1.9 A Resolution Length = 193

Iteration: 1
 Score =  144 bits (364), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 79/171 (46%), Positives = 100/171 (58%), Gaps = 9/171 (5%)
Query: 2   ARPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRF 61
           A    + D+    E  GRI++++ +D++PKTA+NFR LC   KG G        YKG  F
Sbjct: 26  ASGNVYFDVYANEESLGRIVMKLEDDIVPKTAKNFRTLCERPKGEG--------YKGSTF 77
Query: 62  HRVIKGFMIQXXXXXXXXXXXXESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFF 121
           HR+I GFM+Q             SIYG KF DENFELKH ++G+LSMAN G +TNGSQFF
Sbjct: 78  HRIIPGFMVQGGDYTAHNGTGGRSIYGEKFPDENFELKHTKEGILSMANCGAHTNGSQFF 137
Query: 122 ITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIA-DVTITDCG 171
           IT  +T  LD KHVVFG V++GM VV  I    +          + I DCG
Sbjct: 138 ITLGKTQWLDEKHVVFGEVVEGMDVVHKIAKYGSESGQVKKGYRIEIRDCG 188

>pdb|2C3B|A Chain A, The Crystal Structure Of Aspergillus Fumigatus Cyclophilin Reveals 3d Domain Swapping Of A Central Element Length = 172

Iteration: 1
 Score =  135 bits (341), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 79/161 (49%), Positives = 96/161 (59%), Gaps = 15/161 (9%)
Query: 18  GRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRVIKGFMIQXXXXXX 77
           GRI+  +++  +PKTA+NFR LC    G G        Y+   FHR+I  FMIQ      
Sbjct: 22  GRIVFNLFDKDVPKTAKNFRELCKRPAGEG--------YRESTFHRIIPNFMIQGGDFTR 73
Query: 78  XXXXXXESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFFITTTRTSHLDGKHVVF 137
                  SIYG KF DENF  KH++KG+LSMANAGPNTNGSQFFITT  TS LDGKHVVF
Sbjct: 74  GNGTGGRSIYGDKFADENFSRKHDKKGILSMANAGPNTNGSQFFITTAVTSWLDGKHVVF 133
Query: 138 GRVI--KGMGVVRSIEHVMTGDNDCPIADVT---ITDCGEI 173
           G V   K   VV+ IE +  G +   +   T   I +CGE+
Sbjct: 134 GEVADEKSYSVVKEIEAL--GSSSGSVRSNTRPKIVNCGEL 172

>pdb|1XWN|A Chain A, Solution Structure Of Cyclophilin Like 1(Ppil1) And Insights Into Its Interaction With Skip Length = 174

Iteration: 1
 Score =  120 bits (301), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 71/165 (43%), Positives = 96/165 (58%), Gaps = 18/165 (10%)
Query: 4   PRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHR 63
           P  +L+ S+G+     I++E+Y    PKT +NF  L    +G         +Y G +FHR
Sbjct: 12  PNVYLETSMGI-----IVLELYWKHAPKTCKNFAELA--RRG---------YYNGTKFHR 55
Query: 64  VIKGFMIQXXXXXXXXXXXXESIYGLKFEDE-NFELKHERKGMLSMANAGPNTNGSQFFI 122
           +IK FMIQ             SIYG +FEDE + +LK    G+L+MANAGP+TNGSQFF+
Sbjct: 56  IIKDFMIQGGDPTGTGRGGA-SIYGKQFEDELHPDLKFTGAGILAMANAGPDTNGSQFFV 114
Query: 123 TTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTI 167
           T   T  LDGKH +FGRV +G+G+V  +  V T   D P+ DV I
Sbjct: 115 TLAPTQWLDGKHTIFGRVCQGIGMVNRVGMVETNSQDRPVDDVKI 159

>pdb|2X7K|A Chain A, The Crystal Structure Of Ppil1 In Complex With Cyclosporine A Suggests A Binding Mode For Skip Length = 166

Iteration: 1
 Score =  120 bits (301), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 71/165 (43%), Positives = 96/165 (58%), Gaps = 18/165 (10%)
Query: 4   PRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHR 63
           P  +L+ S+G+     I++E+Y    PKT +NF  L    +G         +Y G +FHR
Sbjct: 12  PNVYLETSMGI-----IVLELYWKHAPKTCKNFAELA--RRG---------YYNGTKFHR 55
Query: 64  VIKGFMIQXXXXXXXXXXXXESIYGLKFEDE-NFELKHERKGMLSMANAGPNTNGSQFFI 122
           +IK FMIQ             SIYG +FEDE + +LK    G+L+MANAGP+TNGSQFF+
Sbjct: 56  IIKDFMIQGGDPTGTGRGG-ASIYGKQFEDELHPDLKFTGAGILAMANAGPDTNGSQFFV 114
Query: 123 TTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTI 167
           T   T  LDGKH +FGRV +G+G+V  +  V T   D P+ DV I
Sbjct: 115 TLAPTQWLDGKHTIFGRVCQGIGMVNRVGMVETNSQDRPVDDVKI 159

>pdb|2K7N|A Chain A, Solution Structure Of The Ppil1 Bound To A Fragment Of Skip Length = 203

Iteration: 1
 Score =  120 bits (300), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 71/165 (43%), Positives = 96/165 (58%), Gaps = 18/165 (10%)
Query: 4   PRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHR 63
           P  +L+ S+G+     I++E+Y    PKT +NF  L    +G         +Y G +FHR
Sbjct: 12  PNVYLETSMGI-----IVLELYWKHAPKTCKNFAELA--RRG---------YYNGTKFHR 55
Query: 64  VIKGFMIQXXXXXXXXXXXXESIYGLKFEDE-NFELKHERKGMLSMANAGPNTNGSQFFI 122
           +IK FMIQ             SIYG +FEDE + +LK    G+L+MANAGP+TNGSQFF+
Sbjct: 56  IIKDFMIQGGDPTGTGRGGA-SIYGKQFEDELHPDLKFTGAGILAMANAGPDTNGSQFFV 114
Query: 123 TTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTI 167
           T   T  LDGKH +FGRV +G+G+V  +  V T   D P+ DV I
Sbjct: 115 TLAPTQWLDGKHTIFGRVCQGIGMVNRVGMVETNSQDRPVDDVKI 159

>pdb|2OJU|A Chain A, X-Ray Structure Of Complex Of Human Cyclophilin J With Cyclosporin A Length = 167

Iteration: 1
 Score =  113 bits (282), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 69/157 (43%), Positives = 88/157 (56%), Gaps = 19/157 (12%)
Query: 18  GRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRVIKGFMIQXXXXXX 77
           G I +E++ +  PKT ENF ALC              +Y G  FHR IKGFM+Q      
Sbjct: 16  GDIKIEVFCERTPKTCENFLALCASN-----------YYNGCIFHRNIKGFMVQTGDPTG 64
Query: 78  XXXXXXESIYGLKFEDENFE-LKHERKGMLSMANAGPNTNGSQFFITTTRTSHLDGKHVV 136
                  SI+G KFEDE  E LKH  +G++SMAN GPNTNGSQFFIT  +  HLD K+ V
Sbjct: 65  TGRGG-NSIWGKKFEDEYSEYLKHNVRGVVSMANNGPNTNGSQFFITYGKQPHLDMKYTV 123
Query: 137 FGRVIKGMGVVRSIEHVMTGD------NDCPIADVTI 167
           FG+VI G+  +  +E +   +      ND  I D+TI
Sbjct: 124 FGKVIDGLETLDELEKLPVNEKTYRPLNDVHIKDITI 160

>pdb|1XYH|A Chain A, Crystal Structure Of Recombinant Human Cyclophilin J Length = 161

Iteration: 1
 Score =  113 bits (282), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 69/157 (43%), Positives = 88/157 (56%), Gaps = 19/157 (12%)
Query: 18  GRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRVIKGFMIQXXXXXX 77
           G I +E++ +  PKT ENF ALC              +Y G  FHR IKGFM+Q      
Sbjct: 10  GDIKIEVFCERTPKTCENFLALCASN-----------YYNGCIFHRNIKGFMVQTGDPTG 58
Query: 78  XXXXXXESIYGLKFEDENFE-LKHERKGMLSMANAGPNTNGSQFFITTTRTSHLDGKHVV 136
                  SI+G KFEDE  E LKH  +G++SMAN GPNTNGSQFFIT  +  HLD K+ V
Sbjct: 59  TGRGG-NSIWGKKFEDEYSEYLKHNVRGVVSMANNGPNTNGSQFFITYGKQPHLDMKYTV 117
Query: 137 FGRVIKGMGVVRSIEHVMTGD------NDCPIADVTI 167
           FG+VI G+  +  +E +   +      ND  I D+TI
Sbjct: 118 FGKVIDGLETLDELEKLPVNEKTYRPLNDVHIKDITI 154

>pdb|2A2N|A Chain A, Crystal Structure Of The Peptidylprolyl Isomerase Domain Of Human Ppwd1 Length = 176

Iteration: 1
 Score =  108 bits (269), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 74/168 (44%), Positives = 92/168 (54%), Gaps = 14/168 (8%)
Query: 4   PRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHR 63
           P+   D +I     G I  +++    PKT ENF   C   +          +Y G  FHR
Sbjct: 17  PKRVSDSAIIHTSMGDIHTKLFPVECPKTVENF---CVHSRN--------GYYNGHTFHR 65
Query: 64  VIKGFMIQXXXXXXXXXXXXESIYGLKFEDE-NFELKHERKGMLSMANAGPNTNGSQFFI 122
           +IKGFMIQ            ESI+G +FEDE +  L+H+R   LSMANAG NTNGSQFFI
Sbjct: 66  IIKGFMIQTGDPTGTGMGG-ESIWGGEFEDEFHSTLRHDRPYTLSMANAGSNTNGSQFFI 124
Query: 123 TTTRTSHLDGKHVVFGRVIKGMGVVRSIEHV-MTGDNDCPIADVTITD 169
           T   T  LD KH VFGRV KGM VV+ I +V +    D P  DV+I +
Sbjct: 125 TVVPTPWLDNKHTVFGRVTKGMEVVQRISNVKVNPKTDKPYEDVSIIN 172

>pdb|2B71|A Chain A, Plasmodium Yoelii Cyclophilin-Like Protein Length = 196

Iteration: 1
 Score =  105 bits (263), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 69/151 (45%), Positives = 79/151 (52%), Gaps = 13/151 (8%)
Query: 18  GRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRVIKGFMIQXXXXXX 77
           G   VE+Y    PKT  NF  LC  E G          Y    FHRVI  F+IQ      
Sbjct: 48  GDFEVELYWYHSPKTCLNFYTLC--EMGF---------YDNTIFHRVIPNFVIQGGDPTG 96
Query: 78  XXXXXXESIYGLKFEDE-NFELKHERKGMLSMANAGPNTNGSQFFITTTRTSHLDGKHVV 136
                 +SIYG  FEDE N ELKH   G+LSM+N GPNTN SQFFIT     HLDGKH +
Sbjct: 97  TGKGG-KSIYGEYFEDEINKELKHTGAGILSMSNNGPNTNSSQFFITLAPLPHLDGKHTI 155
Query: 137 FGRVIKGMGVVRSIEHVMTGDNDCPIADVTI 167
           F RV K M  + +I  V T   + PI D+ I
Sbjct: 156 FARVSKNMTCIENIASVQTTATNKPIFDLKI 186

>pdb|2FU0|A Chain A, Plasmodium Falciparum Cyclophilin Pfe0505w Putative Cyclosporin- Binding Domain Length = 160

Iteration: 1
 Score =  100 bits (249), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 63/153 (41%), Positives = 81/153 (52%), Gaps = 13/153 (8%)
Query: 18  GRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRVIKGFMIQXXXXXX 77
           G I + ++     KT +NF               +  +Y    FHRVIK FM+Q      
Sbjct: 15  GDIHISLFYKECKKTVQNFSV-----------HSINGYYNNCIFHRVIKHFMVQTGDPSG 63
Query: 78  XXXXXXESIYGLKFEDENFE-LKHERKGMLSMANAGPNTNGSQFFITTTRTSHLDGKHVV 136
                 ESI+G +FEDE F+ L H +  M+SMAN GPNTNGSQFFITT     LD KH V
Sbjct: 64  DGTGG-ESIWGNEFEDEFFDHLNHSKPFMVSMANCGPNTNGSQFFITTVPCPWLDFKHTV 122
Query: 137 FGRVIKGMGVVRSIEHVMTGDNDCPIADVTITD 169
           FG+V +G  +V  IE V T   D P+ D+ I +
Sbjct: 123 FGKVTQGSKIVLDIEKVRTDKRDKPLEDIKILN 155

>pdb|2POE|A Chain A, Crystal Structure Of Cryptosporidium Parvum Cyclophilin Type Peptidyl-Prolyl Cis-Trans Isomerase Cgd2_1660 Length = 185

Iteration: 1
 Score = 97.4 bits (241), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 59/157 (37%), Positives = 88/157 (56%), Gaps = 17/157 (10%)
Query: 18  GRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRVIKGFMIQXXXXXX 77
           G +  E++    PK  +NF AL               +YK   FH+ IKGF+IQ      
Sbjct: 26  GDLKFELFCSQCPKACKNFLALSASG-----------YYKNTIFHKNIKGFIIQGGDPTG 74
Query: 78  XXXXXXESIYGLKFEDENF-ELKHERKGMLSMANAG----PNTNGSQFFITTTRTSHLDG 132
                 ESIYG  F+DE + ELK++R+G+LSMA+ G    PNTNGSQFFIT +    L+G
Sbjct: 75  TGKGG-ESIYGRYFDDEIYPELKYDRRGILSMASKGASKKPNTNGSQFFITYSSLPQLNG 133
Query: 133 KHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTITD 169
           ++V+FG++I G   + ++E+  +  +  PI ++ I D
Sbjct: 134 EYVIFGKLIDGFETLNTLENCPSDKSHKPIDEIIIKD 170

>pdb|1ZKC|A Chain A, Crystal Structure Of The Cyclophiln_ring Domain Of Human Peptidylprolyl Isomerase (Cyclophilin)-Like 2 Isoform B Length = 197

Iteration: 1
 Score = 97.4 bits (241), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 56/138 (40%), Positives = 79/138 (57%), Gaps = 13/138 (9%)
Query: 17  EGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRVIKGFMIQXXXXX 76
           +G + +E++ D+ PKT ENF  LC              +Y G  FHR I+ F+IQ     
Sbjct: 28  KGDLNLELHCDLTPKTCENFIRLCKKH-----------YYDGTIFHRSIRNFVIQGGDPT 76
Query: 77  XXXXXXXESIYGLKFEDE-NFELKHERKGMLSMANAGPNTNGSQFFITTTRTSHLDGKHV 135
                  ES +G  F+DE    L H  +G+LSMAN+GPN+N SQFFIT    ++LD KH 
Sbjct: 77  GTGTGG-ESYWGKPFKDEFRPNLSHTGRGILSMANSGPNSNRSQFFITFRSCAYLDKKHT 135
Query: 136 VFGRVIKGMGVVRSIEHV 153
           +FGRV+ G  V+ ++E+V
Sbjct: 136 IFGRVVGGFDVLTAMENV 153

>pdb|1W74|A Chain A, X-Ray Structure Of Peptidyl-Prolyl Cis-Trans Isomerase A, Ppia, Rv0009, From Mycobacterium Tuberculosis. Length = 191

Iteration: 1
 Score = 94.7 bits (234), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 63/157 (40%), Positives = 81/157 (51%), Gaps = 11/157 (7%)
Query: 18  GRIIVEIYNDVIPKTAENFRALCTGEKGIGPN--TGVP--LHYKGVRFHRVIKGFMIQXX 73
           G I + ++ +  PKT  NF  L  G K       +G P    Y G  FHRVI+GFMIQ  
Sbjct: 33  GDIKIALFGNHAPKTVANFVGLAQGTKDYSTQNASGGPSGPFYDGAVFHRVIQGFMIQGG 92
Query: 74  XXXXXXXXXXESIYGLKFEDE-NFELKHERKGMLSMANAGPNTNGSQFFITTTRTSHLDG 132
                           KF DE + EL+ ++  +L+MANAGP TNGSQFFIT  +T HL+ 
Sbjct: 93  DPTGTGRGGPG----YKFADEFHPELQFDKPYLLAMANAGPGTNGSQFFITVGKTPHLNR 148
Query: 133 KHVVFGRVI--KGMGVVRSIEHVMTGDNDCPIADVTI 167
           +H +FG VI  +   VV +I    T  ND P   V I
Sbjct: 149 RHTIFGEVIDAESQRVVEAISKTATDGNDRPTDPVVI 185

>pdb|2HQ6|A Chain A, Structure Of The Cyclophilin_cecyp16-like Domain Of The Serologically Defined Colon Cancer Antigen 10 From Homo Sapiens Length = 185

Iteration: 1
 Score = 83.2 bits (204), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 47/124 (37%), Positives = 67/124 (54%), Gaps = 13/124 (10%)
Query: 18  GRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRVIKGFMIQXXXXXX 77
           G I +E+++   PK   NF  LC           +  +Y    FHRV+ GF++Q      
Sbjct: 34  GDIDIELWSKEAPKACRNFIQLC-----------LEAYYDNTIFHRVVPGFIVQGGDPTG 82
Query: 78  XXXXXXESIYGLKFEDE-NFELKHERKGMLSMANAGPNTNGSQFFITTTRTSHLDGKHVV 136
                 ESIYG  F+DE +  L+  R+G+++MANAG + NGSQFF T  R   L+ KH +
Sbjct: 83  TGSGG-ESIYGAPFKDEFHSRLRFNRRGLVAMANAGSHDNGSQFFFTLGRADELNNKHTI 141
Query: 137 FGRV 140
           FG+V
Sbjct: 142 FGKV 145

>pdb|3BO7|A Chain A, Crystal Structure Of Toxoplasma Gondii Peptidyl-Prolyl Cis-Trans Isomerase, 541.M00136 Length = 201

Iteration: 1
 Score = 78.6 bits (192), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 49/154 (31%), Positives = 76/154 (49%), Gaps = 23/154 (14%)
Query: 14  VELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRVIKGFMIQXX 73
           V  +G + +E++ D+ P+  ++F  LC  +           ++    FHR I+ FMIQ  
Sbjct: 12  VTTQGSLNIELHADMAPRACDSFLRLCAVK-----------YFDDTIFHRCIRNFMIQGG 60
Query: 74  XXXXXXXXXXESIY-----------GLKFEDE-NFELKHERKGMLSMANAGPNTNGSQFF 121
                     + +            G  FEDE +  L H+  G+LSMAN G ++N S+FF
Sbjct: 61  RAELRQPSKKKEVQQSPRSISGFPGGAPFEDEFDNRLVHQGIGVLSMANDGKHSNLSEFF 120
Query: 122 ITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMT 155
           IT     HL+ KH +FGRV+ G+ V+R  E + T
Sbjct: 121 ITFKSCEHLNNKHTIFGRVVGGLDVLRQWEKLET 154

>pdb|3T1U|A Chain A, Crystal Structure Of The Complex Of Cyclophilin-a Enzyme From Azotobacter Vinelandii With Sucafpfpna Peptide Length = 163

Iteration: 1
 Score = 58.5 bits (140), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 51/171 (29%), Positives = 72/171 (42%), Gaps = 41/171 (23%)
Query: 17  EGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRVIKGFMIQXXXXX 76
            G I ++++ D  P+TA NF                  HY G  FHRVI GFMIQ     
Sbjct: 8   HGTITLKLFADKAPETAANFEQYVKDG-----------HYDGTIFHRVIDGFMIQGGGFE 56
Query: 77  XXXXXXXESIYGLKFEDENFELKHE-------RKGMLSMA-NAGPNTNGSQFFITTTRTS 128
                      G+K +     +K+E       +K  ++MA    P++  +QFFI     +
Sbjct: 57  P----------GMKQKSTRAPIKNEANNGLSNKKYTIAMARTPDPHSASAQFFINVKDNA 106
Query: 129 HLDGK--------HVVFGRVIKGMGVVRSIEHVMTGD----NDCPIADVTI 167
            LD          + VFG V++G  VV  I+ V TG      D P+ DV I
Sbjct: 107 FLDHTAPTAHGWGYAVFGEVVEGTDVVDRIKSVATGSRAGHGDVPVDDVII 157

>pdb|2NUL|A Chain A, Peptidylprolyl Isomerase From E. Coli Length = 164

Iteration: 1
 Score = 52.8 bits (125), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 52/165 (31%), Positives = 70/165 (42%), Gaps = 31/165 (18%)
Query: 18  GRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRVIKGFMIQXXXXX- 76
           G I+++ ++D  P+T +NF   C   +G          Y    FHRVI GFMIQ      
Sbjct: 9   GDIVIKTFDDKAPETVKNFLDYC--REGF---------YNNTIFHRVINGFMIQGGGFEP 57
Query: 77  -XXXXXXXESIYGLKFEDENFELKHERKGMLSMANA-GPNTNGSQFFITTTRTSHLDGK- 133
                   E I      + N  LK+ R G L+MA    P++  +QFFI       L+   
Sbjct: 58  GMKQKATKEPIK----NEANNGLKNTR-GTLAMARTQAPHSATAQFFINVVDNDFLNFSG 112
Query: 134 -------HVVFGRVIKGMGVVRSIEHVMTG----DNDCPIADVTI 167
                  + VF  V+ GM VV  I+ V TG      D P  DV I
Sbjct: 113 ESLQGWGYCVFAEVVDGMDVVDKIKGVATGRSGMHQDVPKEDVII 157

>pdb|2OSE|A Chain A, Crystal Structure Of The Mimivirus Cyclophilin Length = 234

Iteration: 1
 Score = 50.8 bits (120), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 51/194 (26%), Positives = 79/194 (40%), Gaps = 30/194 (15%)
Query: 4   PRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGE------KGIGP---NTGVPL 54
           PR ++DI +  E+ GR+ ++++ D  P   ENF  L  G+       G G    N  +  
Sbjct: 15  PRVYMDIVLNNEIIGRLQIKLFRDAFPAGVENFVQLTNGKTYRVNSNGTGKYKYNRHINR 74
Query: 55  HYKGVRFHRVIKGFMIQXXXXXXXXXXXXESIYGLKFEDE-------NFELKHERKGMLS 107
            Y+G +FH V+    I              ++Y     DE       ++   HE KG+LS
Sbjct: 75  TYEGCKFHNVLHNNYIVSGDIYNSNGSSAGTVYC----DEPIPPVFGDYFYPHESKGLLS 130
Query: 108 MA----NAGPNTNGSQFFITT--TRTSH----LDGKHVVFGRVIKGMGVVRSIEHVMTGD 157
           +      +G     S F IT    R S+    LD   VV G+V  G+ V+  I  ++   
Sbjct: 131 LVPYTDESGNRYYDSTFMITLDDIRPSNVLDELDRDQVVIGQVYGGLDVLDKINSMIKPY 190
Query: 158 NDCPIADVTITDCG 171
                   +I  CG
Sbjct: 191 AGRKYPTFSIGKCG 204

>pdb|3S6M|A Chain A, The Structure Of A Peptidyl-Prolyl Cis-Trans Isomerase From Burkholderia Pseudomallei Length = 167

Iteration: 1
 Score = 50.4 bits (119), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 53/171 (30%), Positives = 71/171 (41%), Gaps = 41/171 (23%)
Query: 17  EGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRVIKGFMIQXXXXX 76
            G I +E+     PKT ENF  L   +KG         HY G  FHRVI GFMIQ     
Sbjct: 12  HGVIKLELDEAKAPKTVENF--LNYVKKG---------HYDGTIFHRVINGFMIQGGGFE 60
Query: 77  XXXXXXXESIYGLKFEDENFELKHERKGML-------SMANAG-PNTNGSQFFITTTRTS 128
                      GLK +  +  + +E    L       +MA    P++  +QFFI      
Sbjct: 61  P----------GLKQKPTDAPIANEANNGLKNDTYTIAMARTNDPHSATAQFFINVNDNE 110
Query: 129 HLDGK--------HVVFGRVIKGMGVVRSIEHVMTGD----NDCPIADVTI 167
            L+          + VFG+V++G  +V  I+ V TG      D P  DV I
Sbjct: 111 FLNHSSPTPQGWGYAVFGKVVEGQDIVDKIKAVKTGSKGFHQDVPNDDVVI 161

>pdb|1LOP|A Chain A, Cyclophilin A Complexed With Succinyl-Ala-Pro-Ala-P-Nitroanilide Length = 164

Iteration: 1
 Score = 50.1 bits (118), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 51/165 (30%), Positives = 69/165 (41%), Gaps = 31/165 (18%)
Query: 18  GRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRVIKGFMIQXXXXX- 76
           G I+++ ++D  P+T +NF   C   +G          Y    FHRVI GFMIQ      
Sbjct: 9   GDIVIKTFDDKAPETVKNFLDYC--REGF---------YNNTIFHRVINGFMIQGGGFEP 57
Query: 77  -XXXXXXXESIYGLKFEDENFELKHERKGMLSMANA-GPNTNGSQFFITTTRTSHLDGK- 133
                   E I      + N  LK+ R G L+MA    P++  +QFFI       L+   
Sbjct: 58  GMKQKATKEPIK----NEANNGLKNTR-GTLAMARTQAPHSATAQFFINVVDNDFLNFSG 112
Query: 134 -------HVVFGRVIKGMGVVRSIEHVMTG----DNDCPIADVTI 167
                  + VF  V+ GM  V  I+ V TG      D P  DV I
Sbjct: 113 ESLQGWGYCVFAEVVDGMDEVDKIKGVATGRSGMHQDVPKEDVII 157

>pdb|1CLH|A Chain A, Three-Dimensional Solution Structure Of Escherichia Coli Periplasmic Cyclophilin Length = 166

Iteration: 1
 Score = 49.3 bits (116), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 52/167 (31%), Positives = 73/167 (43%), Gaps = 24/167 (14%)
Query: 18  GRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRVIKGFMIQXXXXXX 77
           G I +E+     P + +NF            N+G    Y    FHRVI GFMIQ      
Sbjct: 14  GNIELELDKQKAPVSVQNFVDYV--------NSGF---YNNTTFHRVIPGFMIQGGGFTE 62
Query: 78  XXXXXXESIYGLKFEDENFELKHERKGMLSMA-NAGPNTNGSQFFITTTRTSHLD-GK-- 133
                  +   +K E +N  L++ R G ++MA  A  ++  SQFFI     + LD G+  
Sbjct: 63  QMQQKKPNP-PIKNEADN-GLRNTR-GTIAMARTADKDSATSQFFINVADNAFLDHGQRD 119
Query: 134 --HVVFGRVIKGMGVVRSIEHVMTGD----NDCPIADVTITDCGEIP 174
             + VFG+V+KGM V   I  V T D     + P   V I     +P
Sbjct: 120 FGYAVFGKVVKGMDVADKISQVPTHDVGPYQNVPSKPVVILSAKVLP 166

>pdb|1J2A|A Chain A, Structure Of E. Coli Cyclophilin B K163t Mutant Length = 166

Iteration: 1
 Score = 49.3 bits (116), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 52/167 (31%), Positives = 73/167 (43%), Gaps = 24/167 (14%)
Query: 18  GRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRVIKGFMIQXXXXXX 77
           G I +E+     P + +NF            N+G    Y    FHRVI GFMIQ      
Sbjct: 14  GNIELELDKQKAPVSVQNFVDYV--------NSGF---YNNTTFHRVIPGFMIQGGGFTE 62
Query: 78  XXXXXXESIYGLKFEDENFELKHERKGMLSMA-NAGPNTNGSQFFITTTRTSHLD-GK-- 133
                  +   +K E +N  L++ R G ++MA  A  ++  SQFFI     + LD G+  
Sbjct: 63  QMQQKKPNP-PIKNEADN-GLRNTR-GTIAMARTADKDSATSQFFINVADNAFLDHGQRD 119
Query: 134 --HVVFGRVIKGMGVVRSIEHVMTGD----NDCPIADVTITDCGEIP 174
             + VFG+V+KGM V   I  V T D     + P   V I     +P
Sbjct: 120 FGYAVFGKVVKGMDVADKISQVPTHDVGPYQNVPSKPVVILSATVLP 166

>pdb|3BKP|A Chain A, Crystal Structure Of The Toxoplasma Gondii Cyclophilin, 49.m03261 Length = 232

Iteration: 1
 Score = 48.1 bits (113), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 38/139 (27%), Positives = 60/139 (43%), Gaps = 27/139 (19%)
Query: 18  GRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRVIKGFMIQXXXXXX 77
           G + VE++    P    NF  LC           +  +Y    FHRV+K F++Q      
Sbjct: 31  GDLDVELWARECPLACRNFVQLC-----------LEGYYVNTIFHRVVKDFIVQGGDPTG 79
Query: 78  XXXXXXESIY-GLKFEDENF-ELKHERKGMLSMANAGPN--------------TNGSQFF 121
                 ++ + G  F+ E    LK   +G++ +AN G +              TNG+QFF
Sbjct: 80  TGRGGADTTFDGKPFDVETHPRLKFRYRGLVGVANLGRSSKDAENDERGRSLGTNGNQFF 139
Query: 122 ITTTRTSHLDGKHVVFGRV 140
           IT  R   L+  + +FG+V
Sbjct: 140 ITLARADVLNNAYTLFGKV 158

>pdb|3RKV|A Chain A, C-Terminal Domain Of Protein C56c10.10, A Putative Peptidylprolyl Isomerase, From Caenorhabditis Elegans Length = 162

Iteration: 1
 Score = 43.5 bits (101), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 27/101 (26%), Positives = 48/101 (47%)
Query: 209 MNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFT 268
           + +V++++  GNE + ++DYK A+  YR AL  LD    +E   E +   L +    ++ 
Sbjct: 8   LKSVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYA 67
Query: 269 NSSACXXXXXXXXXXXXXTEFAMRDGDDNVKALFRQGQVSI 309
           N S C             +   ++  + N KALFR+ +  I
Sbjct: 68  NMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARI 108

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	312
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	1e-177
2wfi_A	179	Peptidyl-prolyl CIS-trans isomerase G; phosphoprot	1e-124
2he9_A	192	NK-tumor recognition protein; cyclosporin, isomera	1e-124
1a58_A	177	Cyclophilin; isomerase, ppiase; 1.95A {Brugia mala	1e-123
2igv_A	173	Peptidyl-prolyl CIS-trans isomerase 3; rotamase; 1	1e-117
1mzw_A	177	Cyclophilin H, U-snRNP-ASSOCIATED cyclophilin; cyc	1e-117
2poy_A	186	Peptidyl-prolyl CIS-trans isomerase; isomerase-imm	1e-116
1qng_A	170	Peptidyl-prolyl CIS-trans isomerase; isomerase-imm	1e-114
1z81_A	229	Cyclophilin; structural genomics, structural genom	1e-112
3ich_A	188	Peptidyl-prolyl CIS-trans isomerase B; beta sandwi	1e-112
2haq_A	172	Cyclophilin; rotamase, proline, isomerase, CIS-tra	1e-110
2ose_A	234	Probable peptidyl-prolyl CIS-trans isomerase; cycl	1e-109
2z6w_A	165	Peptidyl-prolyl CIS-trans isomerase; isomerase-imm	1e-108
3k2c_A	193	Peptidyl-prolyl CIS-trans isomerase; ssgcid, NIH,	1e-108
2cmt_A	172	Peptidyl-prolyl CIS-trans isomerase E; rotamase ac	1e-108
2r99_A	173	Peptidyl-prolyl CIS-trans isomerase E; CIS-trans i	1e-108
3rdd_A	184	Peptidyl-prolyl CIS-trans isomerase A; beta barrel	1e-107
3pmp_A	164	Cyclophilin A; peptidyl prolyl isomerase, isomeras	1e-107
2c3b_A	172	Ppiase, cyclophilin; isomerase, 3D domain swapping	1e-103
2k7n_A	203	Peptidyl-prolyl CIS-trans isomerase-like 1; beta b	1e-91
2fu0_A	160	Cyclophilin, putative; PFE0505W, cyclosporin-bindi	1e-79
2a2n_A	176	Peptidylprolyl isomerase domain and WD repeat CON;	4e-78
2x7k_A	166	Peptidyl-prolyl CIS-trans isomerase-like 1; isomer	2e-76
2b71_A	196	Cyclophilin-like protein; structural genomics, str	3e-75
3bo7_A	201	Peptidyl-prolyl CIS-trans isomerase cyclophilin-T;	9e-72
2poe_A	185	Cyclophilin-like protein, putative; cryptosporidiu	3e-71
2ok3_A	161	Peptidyl-prolyl CIS-trans isomerase-like 3; beta-b	1e-69
2hq6_A	185	Serologically defined colon cancer antigen 10; pro	2e-67
1zkc_A	197	Peptidyl-prolyl CIS-trans isomerase like 2; CIS-tr	3e-67
1w74_A	191	Peptidyl-prolyl CIS-trans isomerase A; cyclophilin	9e-66
3bkp_A	232	Cyclophilin; malaria, isomerase, structural GENO s	5e-59
3s6m_A	167	Peptidyl-prolyl CIS-trans isomerase; seattle struc	2e-46
1v9t_A	166	Cyclophilin B; beta barrel, isomerase-isomerase in	2e-45
1lop_A	164	Cyclophilin A; rotamase, isomerase-isomerase inhib	3e-45
3rfy_A	369	Peptidyl-prolyl CIS-trans isomerase CYP38, chloro;	1e-34
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	1e-31
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	2e-29
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	2e-28
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	2e-26
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	5e-20
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	1e-13
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	4e-11
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	7e-11
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	8e-11
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	2e-10
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	2e-10
2l6j_A	111	TPR repeat-containing protein associated with HSP;	4e-10
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	4e-10
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	7e-10
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	2e-09
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	2e-08
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	9e-08
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	2e-06
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	1e-05
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	2e-05
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	2e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	7e-05
2gw1_A	514	Mitochondrial precursor proteins import receptor;	8e-05
2gw1_A	514	Mitochondrial precursor proteins import receptor;	8e-04
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	2e-04
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	8e-04

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A Length = 370

 Score =  494 bits (1274), Expect = e-177
 Identities = 157/311 (50%), Positives = 205/311 (65%), Gaps = 3/311 (0%)

Query: 1   MARPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVR 60
            + PR F D+ IG E  GRI++E++ D++PKTAENFRALCTGEKGIGP TG PLH+KG  
Sbjct: 13  PSNPRVFFDVDIGGERVGRIVLELFADIVPKTAENFRALCTGEKGIGPTTGKPLHFKGCP 72

Query: 61  FHRVIKGFMIQGGDISAGDGTGGESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQF 120
           FHR+IK FMIQGGD S  +GTGGESIYG KFEDENF  KH+++G+LSMANAG NTNGSQF
Sbjct: 73  FHRIIKKFMIQGGDFSNQNGTGGESIYGEKFEDENFHYKHDKEGLLSMANAGSNTNGSQF 132

Query: 121 FITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTITDCGEIPEGADDG 180
           FITT  T HLDGKHVVFG+VIKGMGV + +E+V     + P     I +CGE+ EG D G
Sbjct: 133 FITTVPTPHLDGKHVVFGQVIKGMGVAKILENVEV-KGEKPAKLCVIAECGELKEGDDWG 191

Query: 181 ISNFFNDGDSYPDWPADLDQTPNELSWWMNAVDSIKVFGNEHYKKQDYKMALRKYRKALR 240
           I      GDS+PD+P D D    ++   +   + +K  GN  +K Q+++MA++KY K LR
Sbjct: 192 IFPKDGSGDSHPDFPEDADVDLKDVDKILLISEDLKNIGNTFFKSQNWEMAIKKYTKVLR 251

Query: 241 YLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKA 300
           Y++    +   ++   + L+        N  ACKLK+ D +GA+     A+     N KA
Sbjct: 252 YVE--GSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKA 309

Query: 301 LFRQGQVSIIL 311
           L+R+ Q    L
Sbjct: 310 LYRRAQGWQGL 320

>2wfi_A Peptidyl-prolyl CIS-trans isomerase G; phosphoprotein, PRE-mRNA splicing, alternative splicing, nucleus, rotamase, cyclosporin; HET: OCS; 0.75A {Homo sapiens} PDB: 2wfj_A* 2gw2_A Length = 179

 Score =  352 bits (905), Expect = e-124
 Identities = 104/173 (60%), Positives = 126/173 (72%)

Query: 1   MARPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVR 60
           + RPRCF DI+I  +  GR++ E+++DV PKT ENFR LCTGEKG G +T  PLHYK   
Sbjct: 7   VQRPRCFFDIAINNQPAGRVVFELFSDVCPKTCENFRCLCTGEKGTGKSTQKPLHYKSCL 66

Query: 61  FHRVIKGFMIQGGDISAGDGTGGESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQF 120
           FHRV+K FM+QGGD S G+G GGESIYG  FEDE+F +KH ++ +LSMAN G +TNGSQF
Sbjct: 67  FHRVVKDFMVQGGDFSEGNGRGGESIYGGFFEDESFAVKHNKEFLLSMANRGKDTNGSQF 126

Query: 121 FITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTITDCGEI 173
           FITT  T HLDG HVVFG+VI G  VVR IE+  T     P A+V I  CGE+
Sbjct: 127 FITTKPTPHLDGHHVVFGQVISGQEVVREIENQKTDAASKPFAEVRILSCGEL 179

>2he9_A NK-tumor recognition protein; cyclosporin, isomerase, membrane, repeat, rotamase, peptidylprolyl isomerase, structural genomics; 2.00A {Homo sapiens} Length = 192

 Score =  351 bits (904), Expect = e-124
 Identities = 98/174 (56%), Positives = 119/174 (68%)

Query: 1   MARPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVR 60
              P+C  DI I  E  GRI+ ++++D+ PKT +NF  LC+GEKG+G  TG  L YKG  
Sbjct: 17  RGSPQCHFDIEINREPVGRIMFQLFSDICPKTCKNFLCLCSGEKGLGKTTGKKLCYKGST 76

Query: 61  FHRVIKGFMIQGGDISAGDGTGGESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQF 120
           FHRV+K FMIQGGD S G+G GGESIYG  F+DENF LKH+R  +LSMAN G +TNGSQF
Sbjct: 77  FHRVVKNFMIQGGDFSEGNGKGGESIYGGYFKDENFILKHDRAFLLSMANRGKHTNGSQF 136

Query: 121 FITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTITDCGEIP 174
           FITT    HLDG HVVFG VI G  V+  IE++ T     P ADV + DCG + 
Sbjct: 137 FITTKPAPHLDGVHVVFGLVISGFEVIEQIENLKTDAASRPYADVRVIDCGVLA 190

>1a58_A Cyclophilin; isomerase, ppiase; 1.95A {Brugia malayi} SCOP: b.62.1.1 PDB: 1a33_A 1c5f_A* Length = 177

 Score =  348 bits (896), Expect = e-123
 Identities = 101/171 (59%), Positives = 124/171 (72%)

Query: 3   RPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFH 62
           R R FLD++I   L GRI++E+YND+ P+T  NF  LCTG  G G  +G PLHYKG  FH
Sbjct: 6   RRRVFLDVTIDGNLAGRIVMELYNDIAPRTCNNFLMLCTGMAGTGKISGKPLHYKGSTFH 65

Query: 63  RVIKGFMIQGGDISAGDGTGGESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFFI 122
           RVIK FMIQGGD + GDGTGGESIYG  F+DE F +KH+   ++SMAN GPNTNGSQFFI
Sbjct: 66  RVIKNFMIQGGDFTKGDGTGGESIYGGMFDDEEFVMKHDEPFVVSMANKGPNTNGSQFFI 125

Query: 123 TTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTITDCGEI 173
           TTT   HL+  HVVFG+V+ G  VV  IE++ T   + P+ADV I +CGE+
Sbjct: 126 TTTPAPHLNNIHVVFGKVVSGQEVVTKIEYLKTNSKNRPLADVVILNCGEL 176

>2igv_A Peptidyl-prolyl CIS-trans isomerase 3; rotamase; 1.67A {Caenorhabditis elegans} SCOP: b.62.1.1 PDB: 1e3b_A 1e8k_A 1dyw_A 2igw_A 2hqj_A Length = 173

 Score =  334 bits (860), Expect = e-117
 Identities = 105/174 (60%), Positives = 135/174 (77%), Gaps = 2/174 (1%)

Query: 1   MARPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVR 60
           M+R + F DI+IG +  GRI++E+Y+DV+PKTA NFRALCTGE GIG  +G PLH+KG +
Sbjct: 1   MSRSKVFFDITIGGKASGRIVMELYDDVVPKTAGNFRALCTGENGIG-KSGKPLHFKGSK 59

Query: 61  FHRVIKGFMIQGGDISAGDGTGGESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQF 120
           FHR+I  FMIQGGD + G+GTGGESIYG KF DENF+ KH   G+LSMANAGPNTNGSQF
Sbjct: 60  FHRIIPNFMIQGGDFTRGNGTGGESIYGEKFPDENFKEKHTGPGVLSMANAGPNTNGSQF 119

Query: 121 FITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTITDCGEIP 174
           F+ T +T  LDGKHVVFGRV++G+ VV+++E   +  +  P+ D  I DCG++ 
Sbjct: 120 FLCTVKTEWLDGKHVVFGRVVEGLDVVKAVESNGS-QSGKPVKDCMIADCGQLK 172

>1mzw_A Cyclophilin H, U-snRNP-ASSOCIATED cyclophilin; cyclophilin, peptidyl-prolyl-CIS/trans isomerase, spliceosome, U4/U6-60K protein, WD protein; 2.00A {Homo sapiens} SCOP: b.62.1.1 PDB: 1qoi_A Length = 177

 Score =  334 bits (859), Expect = e-117
 Identities = 98/171 (57%), Positives = 121/171 (70%), Gaps = 3/171 (1%)

Query: 3   RPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFH 62
            P  F D+SIG +  GR+ +E++ DV+PKTAENFR  CTGE       GVP+ YKG  FH
Sbjct: 10  NPVVFFDVSIGGQEVGRMKIELFADVVPKTAENFRQFCTGEFR---KDGVPIGYKGSTFH 66

Query: 63  RVIKGFMIQGGDISAGDGTGGESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFFI 122
           RVIK FMIQGGD   GDGTG  SIY   F DENF+L+H   G+LSMAN+GP+TNG QFFI
Sbjct: 67  RVIKDFMIQGGDFVNGDGTGVASIYRGPFADENFKLRHSAPGLLSMANSGPSTNGCQFFI 126

Query: 123 TTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTITDCGEI 173
           T ++   LDGKHVVFG++I G+ V+R IE+V TG N+ P   V I+ CGE+
Sbjct: 127 TCSKCDWLDGKHVVFGKIIDGLLVMRKIENVPTGPNNKPKLPVVISQCGEM 177

>2poy_A Peptidyl-prolyl CIS-trans isomerase; isomerase-immunosuppressant complex, immunosuppressant, cyclophilin, isomerase, S genomics, structural genomics consortium; HET: BMT; 1.80A {Cryptosporidium parvum iowa II} PDB: 2plu_A* Length = 186

 Score =  331 bits (850), Expect = e-116
 Identities = 103/171 (60%), Positives = 119/171 (69%), Gaps = 2/171 (1%)

Query: 1   MARPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVR 60
              P  + DISIG    GRI +E++ D +P TAENFRALCTGEKG+G  +G PL Y G  
Sbjct: 17  QGNPVVYFDISIGQTPAGRITMELFADKVPITAENFRALCTGEKGMGQ-SGKPLCYTGSF 75

Query: 61  FHRVIKGFMIQGGDISAGDGTGGESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQF 120
           FHR+I  FMIQGGD + GDGTGGESIYG KF DENF   H+   +LSMANAGPNTNGSQF
Sbjct: 76  FHRIIPQFMIQGGDFTRGDGTGGESIYGSKFRDENFVYTHDAPFLLSMANAGPNTNGSQF 135

Query: 121 FITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTITDCG 171
           FITT     LDGKHVVFG+V++GM VV+SIE   +  N  P   V IT  G
Sbjct: 136 FITTVPCPWLDGKHVVFGKVLEGMEVVKSIEKCGS-QNGKPTKSVCITASG 185

>1qng_A Peptidyl-prolyl CIS-trans isomerase; isomerase-immunosuppressant complex, cyclophilin-cyclosporin complex, immunosuppressant, cyclophilin; HET: BMT; 2.1A {Plasmodium falciparum} SCOP: b.62.1.1 PDB: 1qnh_A* Length = 170

 Score =  326 bits (838), Expect = e-114
 Identities = 99/171 (57%), Positives = 119/171 (69%), Gaps = 3/171 (1%)

Query: 3   RPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFH 62
           R + F DISI     GRII E+++D+ P+T ENFRALCTGEK    + G  LHYK   FH
Sbjct: 3   RSKVFFDISIDNSNAGRIIFELFSDITPRTCENFRALCTGEKI--GSRGKNLHYKNSIFH 60

Query: 63  RVIKGFMIQGGDISAGDGTGGESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFFI 122
           R+I  FM QGGDI+ G+G+GGESIYG  F DENF +KH++ G+LSMANAGPNTN SQFFI
Sbjct: 61  RIIPQFMCQGGDITNGNGSGGESIYGRSFTDENFNMKHDQPGLLSMANAGPNTNSSQFFI 120

Query: 123 TTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTITDCGEI 173
           T      LDGKHVVFG+VI+GM VVR +E      +      V ITDCGE+
Sbjct: 121 TLVPCPWLDGKHVVFGKVIEGMNVVREMEKEGA-KSGYVKRSVVITDCGEL 170

>1z81_A Cyclophilin; structural genomics, structural genomics consortium, SGC, isomerase; 2.80A {Plasmodium yoelii yoelii} SCOP: b.62.1.1 Length = 229

 Score =  323 bits (831), Expect = e-112
 Identities = 83/176 (47%), Positives = 119/176 (67%), Gaps = 6/176 (3%)

Query: 1   MARPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVR 60
            + P  F+DI++G    G+   E++ +++PKT+ENFR  CTGE  +     +P+ YK   
Sbjct: 57  PSNPVVFMDINLGNNFLGKFKFELFQNIVPKTSENFRQFCTGEYKV---NNLPVGYKNTI 113

Query: 61  FHRVIKGFMIQGGDISAGDGTGGESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQF 120
           FHRVIK FMIQGGD    +G+G  SIYG KF+DENF++KH+++G+LSMAN+GPNTNG QF
Sbjct: 114 FHRVIKEFMIQGGDFINHNGSGSLSIYGEKFDDENFDIKHDKEGLLSMANSGPNTNGCQF 173

Query: 121 FITTTRTSHLDGKHVVFGRVI--KGMGVVRSIEHVMTGD-NDCPIADVTITDCGEI 173
           FITT +   LDGK+VVFGR+I    + +++ IE+V        P   + + +CGE+
Sbjct: 174 FITTKKCEWLDGKNVVFGRIIDNDSLLLLKKIENVSVTPYIYKPKIPINVVECGEL 229

>3ich_A Peptidyl-prolyl CIS-trans isomerase B; beta sandwich, cyclosporin, endoplasmic reticulum, glycoprot isomerase, rotamase; 1.20A {Homo sapiens} PDB: 3ici_A* 1cyn_A* 2esl_A* 2rmc_A* 1h0p_A 1xo7_A 1xq7_A* Length = 188

 Score =  321 bits (825), Expect = e-112
 Identities = 98/179 (54%), Positives = 122/179 (68%), Gaps = 8/179 (4%)

Query: 4   PRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHR 63
            + + D+ IG E  GR+I  ++   +PKT +NF AL TGEKG G        YK  +FHR
Sbjct: 16  VKVYFDLRIGDEDVGRVIFGLFGKTVPKTVDNFVALATGEKGFG--------YKNSKFHR 67

Query: 64  VIKGFMIQGGDISAGDGTGGESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFFIT 123
           VIK FMIQGGD + GDGTGG+SIYG +F DENF+LKH   G +SMANAG +TNGSQFFIT
Sbjct: 68  VIKDFMIQGGDFTRGDGTGGKSIYGERFPDENFKLKHYGPGWVSMANAGKDTNGSQFFIT 127

Query: 124 TTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTITDCGEIPEGADDGIS 182
           T +T+ LDGKHVVFG+V++GM VVR +E   T   D P+ DV I DCG+I       I+
Sbjct: 128 TVKTAWLDGKHVVFGKVLEGMEVVRKVESTKTDSRDKPLKDVIIADCGKIEVEKPFAIA 186

>2haq_A Cyclophilin; rotamase, proline, isomerase, CIS-trans, protozoa, KAla-AZAR.; 1.97A {Leishmania donovani} PDB: 3eov_A* 3bt8_A Length = 172

 Score =  315 bits (810), Expect = e-110
 Identities = 92/171 (53%), Positives = 108/171 (63%), Gaps = 9/171 (5%)

Query: 3   RPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFH 62
             + + D+ I  E  GRI + ++    P T ENFR LCTGE G G        YK   FH
Sbjct: 11  TAKVYFDVMIDSEPLGRITIGLFGKDAPLTTENFRQLCTGEHGFG--------YKDSIFH 62

Query: 63  RVIKGFMIQGGDISAGDGTGGESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFFI 122
           RVI+ FMIQGGD +  DGTGG+SIYG KF DEN  +KH   G LSMANAGPNTNGSQFFI
Sbjct: 63  RVIQNFMIQGGDFTNFDGTGGKSIYGEKFADENLNVKH-FVGALSMANAGPNTNGSQFFI 121

Query: 123 TTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTITDCGEI 173
           TT  T  LDG+HVVFG+V+ GM VV  IE   T  +D P+  V I   GE+
Sbjct: 122 TTAPTPWLDGRHVVFGKVLDGMDVVLRIEKTKTNSHDRPVKPVKIVASGEL 172

>2ose_A Probable peptidyl-prolyl CIS-trans isomerase; cyclophilin; 2.04A {Mimivirus} Length = 234

 Score =  317 bits (813), Expect = e-109
 Identities = 49/199 (24%), Positives = 83/199 (41%), Gaps = 22/199 (11%)

Query: 3   RPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTG---------VP 53
            PR ++DI +  E+ GR+ ++++ D  P   ENF  L  G+     + G         + 
Sbjct: 14  NPRVYMDIVLNNEIIGRLQIKLFRDAFPAGVENFVQLTNGKTYRVNSNGTGKYKYNRHIN 73

Query: 54  LHYKGVRFHRVIKGFMIQGGDISAGDGTGGESIYGLKFED---ENFELKHERKGMLSMA- 109
             Y+G +FH V+    I  GDI   +G+   ++Y  +       ++   HE KG+LS+  
Sbjct: 74  RTYEGCKFHNVLHNNYIVSGDIYNSNGSSAGTVYCDEPIPPVFGDYFYPHESKGLLSLVP 133

Query: 110 ---NAGPNTNGSQFFIT------TTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDC 160
               +G     S F IT      +     LD   VV G+V  G+ V+  I  ++      
Sbjct: 134 YTDESGNRYYDSTFMITLDDIRPSNVLDELDRDQVVIGQVYGGLDVLDKINSMIKPYAGR 193

Query: 161 PIADVTITDCGEIPEGADD 179
                +I  CG   + +  
Sbjct: 194 KYPTFSIGKCGAYLDSSQA 212

>2z6w_A Peptidyl-prolyl CIS-trans isomerase; isomerase-immunosuppressant complex, immunosuppressant, cyclophilin D; HET: BMT MLE CIT; 0.96A {Homo sapiens} SCOP: b.62.1.1 PDB: 3rcg_A* 3r49_A* 3r54_A 3r56_A* 3r57_A* 3r59_A* 3rcf_A* 3r4g_A* 3rci_X* 3rck_X* 3rcl_A* 3rd9_X* 3rda_X* 3rdb_A* 3rdc_A* 2bit_X 2biu_X 3qyu_A 3k0m_A 1ak4_A* ... Length = 165

 Score =  310 bits (798), Expect = e-108
 Identities = 97/173 (56%), Positives = 118/173 (68%), Gaps = 9/173 (5%)

Query: 1   MARPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVR 60
           M  P  +LD+    +  GR+++E+  DV+PKTAENFRALCTGEKG G        YKG  
Sbjct: 1   MGNPLVYLDVDANGKPLGRVVLELKADVVPKTAENFRALCTGEKGFG--------YKGST 52

Query: 61  FHRVIKGFMIQGGDISAGDGTGGESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQF 120
           FHRVI  FM Q GD +  +GTGG+SIYG +F DENF LKH   G+LSMANAGPNTNGSQF
Sbjct: 53  FHRVIPSFMCQAGDFTNHNGTGGKSIYGSRFPDENFTLKHVGPGVLSMANAGPNTNGSQF 112

Query: 121 FITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTITDCGEI 173
           FI T +T  LDGKHVVFG VI+GM VV+ IE   +  +      + ITDCG++
Sbjct: 113 FICTIKTDWLDGKHVVFGHVIEGMDVVKKIESFGS-KSGRTSKKIVITDCGQL 164

>3k2c_A Peptidyl-prolyl CIS-trans isomerase; ssgcid, NIH, niaid, SBRI, UW, decode, cytoplasm, rotamase, structural genomics; HET: PG5; 1.95A {Encephalitozoon cuniculi} Length = 193

 Score =  311 bits (800), Expect = e-108
 Identities = 87/176 (49%), Positives = 111/176 (63%), Gaps = 9/176 (5%)

Query: 1   MARPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVR 60
            A    + D+    E  GRI++++ +D++PKTA+NFR LC   KG G        YKG  
Sbjct: 25  EASGNVYFDVYANEESLGRIVMKLEDDIVPKTAKNFRTLCERPKGEG--------YKGST 76

Query: 61  FHRVIKGFMIQGGDISAGDGTGGESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQF 120
           FHR+I GFM+QGGD +A +GTGG SIYG KF DENFELKH ++G+LSMAN G +TNGSQF
Sbjct: 77  FHRIIPGFMVQGGDYTAHNGTGGRSIYGEKFPDENFELKHTKEGILSMANCGAHTNGSQF 136

Query: 121 FITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGD-NDCPIADVTITDCGEIPE 175
           FIT  +T  LD KHVVFG V++GM VV  I    +          + I DCG +  
Sbjct: 137 FITLGKTQWLDEKHVVFGEVVEGMDVVHKIAKYGSESGQVKKGYRIEIRDCGVLGS 192

>2cmt_A Peptidyl-prolyl CIS-trans isomerase E; rotamase activity, rotamase, RNA-binding, cyclosporin, cyclophilin, beta-barrel; 1.50A {Schistosoma mansoni} PDB: 2ck1_A Length = 172

 Score =  310 bits (796), Expect = e-108
 Identities = 98/173 (56%), Positives = 120/173 (69%), Gaps = 9/173 (5%)

Query: 1   MARPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVR 60
              PR F DI IG    GRI++E+ +D++P+TAENFRALCTGE+G G        Y    
Sbjct: 8   RNLPRVFFDIRIGNGDAGRIVMELRSDIVPRTAENFRALCTGERGFG--------YHNCC 59

Query: 61  FHRVIKGFMIQGGDISAGDGTGGESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQF 120
           FHRVI  FM QGGD   GDGTGG+SIYG KF+DENF+L+HE  G+LSMAN+GPNTNGSQF
Sbjct: 60  FHRVIPQFMCQGGDFVKGDGTGGKSIYGRKFDDENFQLRHEGFGVLSMANSGPNTNGSQF 119

Query: 121 FITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTITDCGEI 173
           FI TT+   LDGKHVVFGRV+ G  VV+ +E V +  +      V I+ CGE+
Sbjct: 120 FICTTKCDWLDGKHVVFGRVVDGQNVVKKMESVGS-KSGKVKEPVIISRCGEL 171

>2r99_A Peptidyl-prolyl CIS-trans isomerase E; CIS-trans isomerization, structural genomics consortium, SGC, alternative splicing, mRNA processing; 1.61A {Homo sapiens} SCOP: b.62.1.1 PDB: 3uch_A 1zmf_A Length = 173

 Score =  309 bits (795), Expect = e-108
 Identities = 93/173 (53%), Positives = 117/173 (67%), Gaps = 9/173 (5%)

Query: 1   MARPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVR 60
            + P+ ++DI IG +  GRI + + +DV+P TAENFR LCT EKG G        +KG  
Sbjct: 9   RSNPQVYMDIKIGNKPAGRIQMLLRSDVVPMTAENFRCLCTHEKGFG--------FKGSS 60

Query: 61  FHRVIKGFMIQGGDISAGDGTGGESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQF 120
           FHR+I  FM QGGD +  +GTGG+SIYG KF+DENF LKH   G+LSMAN+GPNTNGSQF
Sbjct: 61  FHRIIPQFMCQGGDFTNHNGTGGKSIYGKKFDDENFILKHTGPGLLSMANSGPNTNGSQF 120

Query: 121 FITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTITDCGEI 173
           F+T  +T  LDGKHVVFG V +G+ V+R IE   +  +  P   V I DCGE 
Sbjct: 121 FLTCDKTDWLDGKHVVFGEVTEGLDVLRQIEAQGS-KDGKPKQKVIIADCGEY 172

>3rdd_A Peptidyl-prolyl CIS-trans isomerase A; beta barrel, cytosolic, inhibito isomerase-isomerase inhibitor complex; HET: EA4; 2.14A {Homo sapiens} Length = 184

 Score =  309 bits (794), Expect = e-107
 Identities = 98/173 (56%), Positives = 119/173 (68%), Gaps = 9/173 (5%)

Query: 1   MARPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVR 60
           M  P  F DI++  E  GR+  E++ D +PKTAENFRAL TGEKG G        YKG  
Sbjct: 20  MVNPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFG--------YKGSC 71

Query: 61  FHRVIKGFMIQGGDISAGDGTGGESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQF 120
           FHR+I GFM QGGD +  +GTGG+SIYG KFEDENF LKH   G+LSMANAGPNTNGSQF
Sbjct: 72  FHRIIPGFMCQGGDFTRHNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQF 131

Query: 121 FITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTITDCGEI 173
           FI T +T  LDGKHVVFG+V +GM +V ++E   +  N      +TI DCG++
Sbjct: 132 FICTAKTEWLDGKHVVFGKVKEGMNIVEAMERFGS-RNGKTSKKITIADCGQL 183

>3pmp_A Cyclophilin A; peptidyl prolyl isomerase, isomerase-immunosuppressant compl; HET: BMT; 1.47A {Moniliophthora perniciosa} PDB: 3o7t_A Length = 164

 Score =  308 bits (792), Expect = e-107
 Identities = 93/172 (54%), Positives = 119/172 (69%), Gaps = 9/172 (5%)

Query: 2   ARPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRF 61
           A    F +ISI  + EGRI+ ++Y++ +PKTA+NFR L TG+ G G        YK   F
Sbjct: 1   AMANVFFNISINDKPEGRIVFKLYDEAVPKTAKNFRELATGQHGFG--------YKDSIF 52

Query: 62  HRVIKGFMIQGGDISAGDGTGGESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFF 121
           HRVI  FM+QGGD +  +GTGG+SIYG KF DENF++KH + G+LSMANAG NTNGSQFF
Sbjct: 53  HRVIPQFMLQGGDFTRHNGTGGKSIYGEKFADENFQVKHTKPGLLSMANAGANTNGSQFF 112

Query: 122 ITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTITDCGEI 173
           ITT  TS LDGKHVVFG VI+G+ +VR +E   +  +    A + ITDCG +
Sbjct: 113 ITTVPTSWLDGKHVVFGEVIEGLDIVRKVEGKGS-ASGKTNATIKITDCGTV 163

>2c3b_A Ppiase, cyclophilin; isomerase, 3D domain swapping, misfolding, Asp F 11, allergen, rotamase; 1.85A {Aspergillus fumigatus} SCOP: b.62.1.1 Length = 172

 Score =  299 bits (769), Expect = e-103
 Identities = 87/180 (48%), Positives = 109/180 (60%), Gaps = 16/180 (8%)

Query: 2   ARPRCFLDIS-----IGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHY 56
           +  + F D+            GRI+  +++  +PKTA+NFR LC    G G        Y
Sbjct: 1   SMSQVFFDVEYAPVGTAETKVGRIVFNLFDKDVPKTAKNFRELCKRPAGEG--------Y 52

Query: 57  KGVRFHRVIKGFMIQGGDISAGDGTGGESIYGLKFEDENFELKHERKGMLSMANAGPNTN 116
           +   FHR+I  FMIQGGD + G+GTGG SIYG KF DENF  KH++KG+LSMANAGPNTN
Sbjct: 53  RESTFHRIIPNFMIQGGDFTRGNGTGGRSIYGDKFADENFSRKHDKKGILSMANAGPNTN 112

Query: 117 GSQFFITTTRTSHLDGKHVVFGRVI--KGMGVVRSIEHVMTGD-NDCPIADVTITDCGEI 173
           GSQFFITT  TS LDGKHVVFG V   K   VV+ IE + +   +        I +CGE+
Sbjct: 113 GSQFFITTAVTSWLDGKHVVFGEVADEKSYSVVKEIEALGSSSGSVRSNTRPKIVNCGEL 172

>2k7n_A Peptidyl-prolyl CIS-trans isomerase-like 1; beta barrel, disorder-order transition, HOOK-like, mRNA processing, mRNA splicing, rotamase; NMR {Homo sapiens} Length = 203

 Score =  270 bits (692), Expect = 1e-91
 Identities = 83/194 (42%), Positives = 112/194 (57%), Gaps = 23/194 (11%)

Query: 18  GRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRVIKGFMIQGGDISA 77
           G I++E+Y    PKT +NF  L    +G         +Y G +FHR+IK FMIQGGD + 
Sbjct: 21  GIIVLELYWKHAPKTCKNFAELA--RRG---------YYNGTKFHRIIKDFMIQGGDPT- 68

Query: 78  GDGTGGESIYGLKFEDE-NFELKHERKGMLSMANAGPNTNGSQFFITTTRTSHLDGKHVV 136
           G G GG SIYG +FEDE + +LK    G+L+MANAGP+TNGSQFF+T   T  LDGKH +
Sbjct: 69  GTGRGGASIYGKQFEDELHPDLKFTGAGILAMANAGPDTNGSQFFVTLAPTQWLDGKHTI 128

Query: 137 FGRVIKGMGVVRSIEHVMTGDNDCPIADVTITDC-----GEIPEGADDGISNFFNDGDSY 191
           FGRV +G+G+V  +  V T   D P+ DV I        G    G+  G      DG ++
Sbjct: 129 FGRVCQGIGMVNRVGMVETNSQDRPVDDVKIIKAYPSGGGGSGGGSGGGSGGGSGDGGAF 188

Query: 192 PD-----WPADLDQ 200
           P+     +P D+ +
Sbjct: 189 PEIHVAQYPLDMGR 202

>2fu0_A Cyclophilin, putative; PFE0505W, cyclosporin-binding domain, structura genomics, structural genomics consortium, SGC, unknown FUNC; 1.80A {Plasmodium falciparum} SCOP: b.62.1.1 Length = 160

 Score =  238 bits (609), Expect = 1e-79
 Identities = 72/154 (46%), Positives = 88/154 (57%), Gaps = 13/154 (8%)

Query: 18  GRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRVIKGFMIQGGDISA 77
           G I + ++     KT +NF                  +Y    FHRVIK FM+Q GD S 
Sbjct: 15  GDIHISLFYKECKKTVQNFSVHSING-----------YYNNCIFHRVIKHFMVQTGDPS- 62

Query: 78  GDGTGGESIYGLKFEDENF-ELKHERKGMLSMANAGPNTNGSQFFITTTRTSHLDGKHVV 136
           GDGTGGESI+G +FEDE F  L H +  M+SMAN GPNTNGSQFFITT     LD KH V
Sbjct: 63  GDGTGGESIWGNEFEDEFFDHLNHSKPFMVSMANCGPNTNGSQFFITTVPCPWLDFKHTV 122

Query: 137 FGRVIKGMGVVRSIEHVMTGDNDCPIADVTITDC 170
           FG+V +G  +V  IE V T   D P+ D+ I + 
Sbjct: 123 FGKVTQGSKIVLDIEKVRTDKRDKPLEDIKILNI 156

>2a2n_A Peptidylprolyl isomerase domain and WD repeat CON; CIS-trans isomerization, protein-folding, peptidylprolyl ISO structural genomics; 1.65A {Homo sapiens} SCOP: b.62.1.1 Length = 176

 Score =  234 bits (600), Expect = 4e-78
 Identities = 80/170 (47%), Positives = 97/170 (57%), Gaps = 14/170 (8%)

Query: 3   RPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFH 62
            P+   D +I     G I  +++    PKT ENF        G         +Y G  FH
Sbjct: 16  GPKRVSDSAIIHTSMGDIHTKLFPVECPKTVENFCVHS--RNG---------YYNGHTFH 64

Query: 63  RVIKGFMIQGGDISAGDGTGGESIYGLKFEDE-NFELKHERKGMLSMANAGPNTNGSQFF 121
           R+IKGFMIQ GD + G G GGESI+G +FEDE +  L+H+R   LSMANAG NTNGSQFF
Sbjct: 65  RIIKGFMIQTGDPT-GTGMGGESIWGGEFEDEFHSTLRHDRPYTLSMANAGSNTNGSQFF 123

Query: 122 ITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGD-NDCPIADVTITDC 170
           IT   T  LD KH VFGRV KGM VV+ I +V      D P  DV+I + 
Sbjct: 124 ITVVPTPWLDNKHTVFGRVTKGMEVVQRISNVKVNPKTDKPYEDVSIINI 173

>2x7k_A Peptidyl-prolyl CIS-trans isomerase-like 1; isomerase-immunosuppressant complex, immunosuppressant; HET: MLE MVA BMT ABA SAR; 1.15A {Homo sapiens} PDB: 1xwn_A Length = 166

 Score =  229 bits (587), Expect = 2e-76
 Identities = 75/151 (49%), Positives = 97/151 (64%), Gaps = 13/151 (8%)

Query: 18  GRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRVIKGFMIQGGDISA 77
           G I++E+Y    PKT +NF  L    +G         +Y G +FHR+IK FMIQGGD + 
Sbjct: 21  GIIVLELYWKHAPKTCKNFAELA--RRG---------YYNGTKFHRIIKDFMIQGGDPT- 68

Query: 78  GDGTGGESIYGLKFEDE-NFELKHERKGMLSMANAGPNTNGSQFFITTTRTSHLDGKHVV 136
           G G GG SIYG +FEDE + +LK    G+L+MANAGP+TNGSQFF+T   T  LDGKH +
Sbjct: 69  GTGRGGASIYGKQFEDELHPDLKFTGAGILAMANAGPDTNGSQFFVTLAPTQWLDGKHTI 128

Query: 137 FGRVIKGMGVVRSIEHVMTGDNDCPIADVTI 167
           FGRV +G+G+V  +  V T   D P+ DV I
Sbjct: 129 FGRVCQGIGMVNRVGMVETNSQDRPVDDVKI 159

>2b71_A Cyclophilin-like protein; structural genomics, structural genomics consortium, SGC, isomerase; 2.50A {Plasmodium yoelii} SCOP: b.62.1.1 Length = 196

 Score =  228 bits (583), Expect = 3e-75
 Identities = 76/154 (49%), Positives = 87/154 (56%), Gaps = 13/154 (8%)

Query: 18  GRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRVIKGFMIQGGDISA 77
           G   VE+Y    PKT  NF  LC  E G          Y    FHRVI  F+IQGGD + 
Sbjct: 48  GDFEVELYWYHSPKTCLNFYTLC--EMG---------FYDNTIFHRVIPNFVIQGGDPT- 95

Query: 78  GDGTGGESIYGLKFEDE-NFELKHERKGMLSMANAGPNTNGSQFFITTTRTSHLDGKHVV 136
           G G GG+SIYG  FEDE N ELKH   G+LSM+N GPNTN SQFFIT     HLDGKH +
Sbjct: 96  GTGKGGKSIYGEYFEDEINKELKHTGAGILSMSNNGPNTNSSQFFITLAPLPHLDGKHTI 155

Query: 137 FGRVIKGMGVVRSIEHVMTGDNDCPIADVTITDC 170
           F RV K M  + +I  V T   + PI D+ I   
Sbjct: 156 FARVSKNMTCIENIASVQTTATNKPIFDLKILRT 189

>3bo7_A Peptidyl-prolyl CIS-trans isomerase cyclophilin-T; isomerase-immunosuppressant complex, immunosuppressant, cyclophilin, structural G structural genomics consortium, SGC; HET: BMT; 2.35A {Toxoplasma gondii} Length = 201

 Score =  219 bits (560), Expect = 9e-72
 Identities = 53/165 (32%), Positives = 81/165 (49%), Gaps = 23/165 (13%)

Query: 18  GRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRVIKGFMIQGGDISA 77
           G + +E++ D+ P+  ++F  LC  +           ++    FHR I+ FMIQGG    
Sbjct: 16  GSLNIELHADMAPRACDSFLRLCAVK-----------YFDDTIFHRCIRNFMIQGGRAEL 64

Query: 78  GD----GTGGESIY-------GLKFEDE-NFELKHERKGMLSMANAGPNTNGSQFFITTT 125
                     +S         G  FEDE +  L H+  G+LSMAN G ++N S+FFIT  
Sbjct: 65  RQPSKKKEVQQSPRSISGFPGGAPFEDEFDNRLVHQGIGVLSMANDGKHSNLSEFFITFK 124

Query: 126 RTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTITDC 170
              HL+ KH +FGRV+ G+ V+R  E + T   D P+    + + 
Sbjct: 125 SCEHLNNKHTIFGRVVGGLDVLRQWEKLETDKKDKPLKPPKVEEI 169

>2poe_A Cyclophilin-like protein, putative; cryptosporidium parvum cyclophilin isomerase, structural genomics; 2.01A {Cryptosporidium parvum iowa II} PDB: 2qer_A Length = 185

 Score =  217 bits (555), Expect = 3e-71
 Identities = 67/174 (38%), Positives = 99/174 (56%), Gaps = 17/174 (9%)

Query: 2   ARPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRF 61
            R   +      +   G +  E++    PK  +NF AL               +YK   F
Sbjct: 10  GRENLYFQGVRIITNYGDLKFELFCSQCPKACKNFLALSASG-----------YYKNTIF 58

Query: 62  HRVIKGFMIQGGDISAGDGTGGESIYGLKFEDENF-ELKHERKGMLSMANAG----PNTN 116
           H+ IKGF+IQGGD + G G GGESIYG  F+DE + ELK++R+G+LSMA+ G    PNTN
Sbjct: 59  HKNIKGFIIQGGDPT-GTGKGGESIYGRYFDDEIYPELKYDRRGILSMASKGASKKPNTN 117

Query: 117 GSQFFITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTITDC 170
           GSQFFIT +    L+G++V+FG++I G   + ++E+  +  +  PI ++ I D 
Sbjct: 118 GSQFFITYSSLPQLNGEYVIFGKLIDGFETLNTLENCPSDKSHKPIDEIIIKDI 171

>2ok3_A Peptidyl-prolyl CIS-trans isomerase-like 3; beta-barrel, helix, disulfide bridge; 2.00A {Homo sapiens} SCOP: b.62.1.1 PDB: 1xyh_A 2oju_A* Length = 161

 Score =  212 bits (543), Expect = 1e-69
 Identities = 73/155 (47%), Positives = 94/155 (60%), Gaps = 14/155 (9%)

Query: 18  GRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRVIKGFMIQGGDISA 77
           G I +E++ +  PKT ENF ALC              +Y G  FHR IKGFM+Q GD + 
Sbjct: 10  GDIKIEVFCERTPKTCENFLALCASN-----------YYNGCIFHRNIKGFMVQTGDPT- 57

Query: 78  GDGTGGESIYGLKFEDE-NFELKHERKGMLSMANAGPNTNGSQFFITTTRTSHLDGKHVV 136
           G G GG SI+G KFEDE +  LKH  +G++SMAN GPNTNGSQFFIT  +  HLD K+ V
Sbjct: 58  GTGRGGNSIWGKKFEDEYSEYLKHNVRGVVSMANNGPNTNGSQFFITYGKQPHLDMKYTV 117

Query: 137 FGRVIKGMGVVRSIEHVMTGD-NDCPIADVTITDC 170
           FG+VI G+  +  +E +   +    P+ DV I D 
Sbjct: 118 FGKVIDGLETLDELEKLPVNEKTYRPLNDVHIKDI 152

>2hq6_A Serologically defined colon cancer antigen 10; protein folding, peptidyl-prolyl CIS-trans isomerase, struct genomics; 1.75A {Homo sapiens} Length = 185

 Score =  208 bits (531), Expect = 2e-67
 Identities = 59/155 (38%), Positives = 86/155 (55%), Gaps = 14/155 (9%)

Query: 18  GRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRVIKGFMIQGGDISA 77
           G I +E+++   PK   NF  LC   +          +Y    FHRV+ GF++QGGD + 
Sbjct: 34  GDIDIELWSKEAPKACRNFIQLC--LEA---------YYDNTIFHRVVPGFIVQGGDPT- 81

Query: 78  GDGTGGESIYGLKFEDE-NFELKHERKGMLSMANAGPNTNGSQFFITTTRTSHLDGKHVV 136
           G G+GGESIYG  F+DE +  L+  R+G+++MANAG + NGSQFF T  R   L+ KH +
Sbjct: 82  GTGSGGESIYGAPFKDEFHSRLRFNRRGLVAMANAGSHDNGSQFFFTLGRADELNNKHTI 141

Query: 137 FGRVI-KGMGVVRSIEHVMTGDNDCPIADVTITDC 170
           FG+V    +  +  +  V   D++ P     I  C
Sbjct: 142 FGKVTGDTVYNMLRLSEVDIDDDERPHNPHKIKSC 176

>1zkc_A Peptidyl-prolyl CIS-trans isomerase like 2; CIS-trans isomerization, peptidylprolyl isomerase, protein- folding, structural genomics consortium; 1.65A {Homo sapiens} SCOP: b.62.1.1 Length = 197

 Score =  207 bits (530), Expect = 3e-67
 Identities = 68/155 (43%), Positives = 95/155 (61%), Gaps = 14/155 (9%)

Query: 18  GRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRVIKGFMIQGGDISA 77
           G + +E++ D+ PKT ENF  LC  +K          +Y G  FHR I+ F+IQGGD + 
Sbjct: 29  GDLNLELHCDLTPKTCENFIRLC--KKH---------YYDGTIFHRSIRNFVIQGGDPT- 76

Query: 78  GDGTGGESIYGLKFEDE-NFELKHERKGMLSMANAGPNTNGSQFFITTTRTSHLDGKHVV 136
           G GTGGES +G  F+DE    L H  +G+LSMAN+GPN+N SQFFIT    ++LD KH +
Sbjct: 77  GTGTGGESYWGKPFKDEFRPNLSHTGRGILSMANSGPNSNRSQFFITFRSCAYLDKKHTI 136

Query: 137 FGRVIKGMGVVRSIEHVMTGD-NDCPIADVTITDC 170
           FGRV+ G  V+ ++E+V +    D P  ++ I   
Sbjct: 137 FGRVVGGFDVLTAMENVESDPKTDRPKEEIRIDAT 171

>1w74_A Peptidyl-prolyl CIS-trans isomerase A; cyclophilin, ppiase, RV0009, rotamase, structural proteomics in europe, spine; 2.6A {Mycobacterium tuberculosis} SCOP: b.62.1.1 Length = 191

 Score =  203 bits (519), Expect = 9e-66
 Identities = 70/158 (44%), Positives = 88/158 (55%), Gaps = 11/158 (6%)

Query: 18  GRIIVEIYNDVIPKTAENFRALCTGEKG-IGPNTGVPLH---YKGVRFHRVIKGFMIQGG 73
           G I + ++ +  PKT  NF  L  G K     N         Y G  FHRVI+GFMIQGG
Sbjct: 33  GDIKIALFGNHAPKTVANFVGLAQGTKDYSTQNASGGPSGPFYDGAVFHRVIQGFMIQGG 92

Query: 74  DISAGDGTGGESIYGLKFEDE-NFELKHERKGMLSMANAGPNTNGSQFFITTTRTSHLDG 132
           D + G G GG    G KF DE + EL+ ++  +L+MANAGP TNGSQFFIT  +T HL+ 
Sbjct: 93  DPT-GTGRGGP---GYKFADEFHPELQFDKPYLLAMANAGPGTNGSQFFITVGKTPHLNR 148

Query: 133 KHVVFGRVI--KGMGVVRSIEHVMTGDNDCPIADVTIT 168
           +H +FG VI  +   VV +I    T  ND P   V I 
Sbjct: 149 RHTIFGEVIDAESQRVVEAISKTATDGNDRPTDPVVIE 186

>3bkp_A Cyclophilin; malaria, isomerase, structural GENO structural genomics consortium, SGC; 1.80A {Toxoplasma gondii} Length = 232

 Score =  188 bits (478), Expect = 5e-59
 Identities = 50/171 (29%), Positives = 76/171 (44%), Gaps = 30/171 (17%)

Query: 18  GRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRVIKGFMIQGGDISA 77
           G + VE++    P    NF  LC   +G         +Y    FHRV+K F++QGGD + 
Sbjct: 31  GDLDVELWARECPLACRNFVQLC--LEG---------YYVNTIFHRVVKDFIVQGGDPT- 78

Query: 78  GDGTGG--ESIYGLKFEDE-NFELKHERKGMLSMANAGPN--------------TNGSQF 120
           G G GG   +  G  F+ E +  LK   +G++ +AN G +              TNG+QF
Sbjct: 79  GTGRGGADTTFDGKPFDVETHPRLKFRYRGLVGVANLGRSSKDAENDERGRSLGTNGNQF 138

Query: 121 FITTTRTSHLDGKHVVFGRVI-KGMGVVRSIEHVMTGDNDCPIADVTITDC 170
           FIT  R   L+  + +FG+V    +  +     +  G  D P+    I   
Sbjct: 139 FITLARADVLNNAYTLFGKVTGHTLYNLMKFNDLEVGKEDRPMTPPFIKSV 189

>3s6m_A Peptidyl-prolyl CIS-trans isomerase; seattle structural genomics center for infectious disease; 1.65A {Burkholderia pseudomallei} PDB: 3t1u_A* Length = 167

 Score =  153 bits (389), Expect = 2e-46
 Identities = 56/172 (32%), Positives = 75/172 (43%), Gaps = 32/172 (18%)

Query: 14  VELE---GRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRVIKGFMI 70
           VEL    G I +E+     PKT ENF      +KG         HY G  FHRVI GFMI
Sbjct: 6   VELHTNHGVIKLELDEAKAPKTVENFLNYV--KKG---------HYDGTIFHRVINGFMI 54

Query: 71  QGGDISAGDGTGGESIYGLKFEDE-NFELKHERKGMLSMA-NAGPNTNGSQFFITTTRTS 128
           QGG           +       +E N  LK++    ++MA    P++  +QFFI      
Sbjct: 55  QGGGFE-PGLKQKPT--DAPIANEANNGLKNDT-YTIAMARTNDPHSATAQFFINVNDNE 110

Query: 129 HLDGK--------HVVFGRVIKGMGVVRSIEHVMTGD----NDCPIADVTIT 168
            L+          + VFG+V++G  +V  I+ V TG      D P  DV I 
Sbjct: 111 FLNHSSPTPQGWGYAVFGKVVEGQDIVDKIKAVKTGSKGFHQDVPNDDVVIE 162

>1v9t_A Cyclophilin B; beta barrel, isomerase-isomerase inhibitor complex; HET: NIT; 1.70A {Escherichia coli} SCOP: b.62.1.1 PDB: 1j2a_A* 1vai_A* 1clh_A Length = 166

 Score =  150 bits (382), Expect = 2e-45
 Identities = 53/168 (31%), Positives = 72/168 (42%), Gaps = 27/168 (16%)

Query: 14  VELE---GRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRVIKGFMI 70
           V L    G I +E+     P + +NF        G          Y    FHRVI GFMI
Sbjct: 7   VLLTTSAGNIELELDKQKAPVSVQNFVDYV--NSG---------FYNNTTFHRVIPGFMI 55

Query: 71  QGGDISAGDGTGGESIYGLKFEDENFELKHERKGMLSMA-NAGPNTNGSQFFITTTRTSH 129
           QGG  +       +    +K E +N  L++ R G ++MA  A  ++  SQFFI     + 
Sbjct: 56  QGGGFT-EQMQQKKPNPPIKNEADN-GLRNTR-GTIAMARTADKDSATSQFFINVADNAF 112

Query: 130 LDG-----KHVVFGRVIKGMGVVRSIEHVMTGD----NDCPIADVTIT 168
           LD       + VFG+V+KGM V   I  V T D     + P   V I 
Sbjct: 113 LDHGQRDFGYAVFGKVVKGMDVADKISQVPTHDVGPYQNVPSKPVVIL 160

>1lop_A Cyclophilin A; rotamase, isomerase-isomerase inhibitor complex; HET: NIT; 1.80A {Escherichia coli} SCOP: b.62.1.1 PDB: 2nul_A 2rs4_A Length = 164

 Score =  149 bits (380), Expect = 3e-45
 Identities = 53/172 (30%), Positives = 75/172 (43%), Gaps = 32/172 (18%)

Query: 14  VELE---GRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRVIKGFMI 70
           V      G I+++ ++D  P+T +NF   C   +G          Y    FHRVI GFMI
Sbjct: 2   VTFHTNHGDIVIKTFDDKAPETVKNFLDYC--REG---------FYNNTIFHRVINGFMI 50

Query: 71  QGGDISAGDGTGGESIYGLKFEDE-NFELKHERKGMLSMA-NAGPNTNGSQFFITTTRTS 128
           QGG     +    +       ++E N  LK+ R G L+MA    P++  +QFFI      
Sbjct: 51  QGGG---FEPGMKQKATKEPIKNEANNGLKNTR-GTLAMARTQAPHSATAQFFINVVDND 106

Query: 129 HLDGK--------HVVFGRVIKGMGVVRSIEHVMTGDN----DCPIADVTIT 168
            L+          + VF  V+ GM  V  I+ V TG +    D P  DV I 
Sbjct: 107 FLNFSGESLQGWGYCVFAEVVDGMDEVDKIKGVATGRSGMHQDVPKEDVIIE 158

>3rfy_A Peptidyl-prolyl CIS-trans isomerase CYP38, chloro; cyclophilin, peptidyl prolyl isomerase, ppiase, TLP,; 2.39A {Arabidopsis thaliana} Length = 369

 Score =  128 bits (322), Expect = 1e-34
 Identities = 36/190 (18%), Positives = 59/190 (31%), Gaps = 52/190 (27%)

Query: 17  EGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRVIKGFMIQGGDIS 76
           +    + +     P TA NF  L   E+           Y G+   R   GF++Q GD  
Sbjct: 187 DCVFRIVLDGYNAPVTAGNFVDLV--ERHF---------YDGMEIQRSD-GFVVQTGDPE 234

Query: 77  AGDGTG--------------------GESIYGLKFED-----ENFELKHERKGMLSMANA 111
                                         YG   E+         +     G ++MA  
Sbjct: 235 GPAEGFIDPSTEKTRTVPLEIMVTGEKTPFYGSTLEELGLYKAQVVIPFNAFGTMAMARE 294

Query: 112 G--PNTNGSQFFI-------TTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPI 162
               ++  SQ F        T + ++ LDG++ VFG V      +  ++    GD    I
Sbjct: 295 EFENDSGSSQVFWLLKESELTPSNSNILDGRYAVFGYVTDNEDFLADLK---VGD---VI 348

Query: 163 ADVTITDCGE 172
             + +    E
Sbjct: 349 ESIQVVSGLE 358

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} Length = 162

 Score =  114 bits (288), Expect = 1e-31
 Identities = 31/98 (31%), Positives = 53/98 (54%)

Query: 209 MNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFT 268
           + +V++++  GNE + ++DYK A+  YR AL  LD    +E   E +   L +    ++ 
Sbjct: 8   LKSVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYA 67

Query: 269 NSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQ 306
           N S C L +GDL  A   +   ++  + N KALFR+ +
Sbjct: 68  NMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAK 105

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} Length = 338

 Score =  113 bits (285), Expect = 2e-29
 Identities = 31/195 (15%), Positives = 76/195 (38%), Gaps = 14/195 (7%)

Query: 127 TSHLDGKHVVF-----GRVIKGMGV-VRSIEH----VMTGDNDCPIADVTITDCGEIPEG 176
            +  + + +        + + G+ + V S++     ++    +             +P  
Sbjct: 87  DTWHEQQPIELVLGKEKKELAGLAIGVASMKSGERALVHVGWELAYGKEGNFSFPNVPPM 146

Query: 177 ADDGISNFFNDGDSYPDWPADLDQTPNELSWWMNAVDSIKVFGNEHYKKQDYKMALRKYR 236
           AD     +  +   + +      ++   +   + A D  K+ GN  +K++  + A+++Y 
Sbjct: 147 AD---LLYEVEVIGFDETKEGKARSDMTVEERIGAADRRKMDGNSLFKEEKLEEAMQQYE 203

Query: 237 KALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDD 296
            A+ Y+   +  +   + +       K+    N +AC +KL     A+      + + + 
Sbjct: 204 MAIAYMGDDFMFQLYGKYQ-DMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIVLTEEEK 262

Query: 297 NVKALFRQGQVSIIL 311
           N KALFR+G+    L
Sbjct: 263 NPKALFRRGKAKAEL 277

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 Length = 198

 Score =  107 bits (270), Expect = 2e-28
 Identities = 25/98 (25%), Positives = 44/98 (44%), Gaps = 2/98 (2%)

Query: 209 MNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFT 268
           + +   IK  GNE +KK +   A+ KY++AL +     E +  D+      +  +     
Sbjct: 35  VQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWD--DQILLDKKKNIEISCNL 92

Query: 269 NSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQ 306
           N + C  K  D   A+      ++   +NVKAL++ G 
Sbjct: 93  NLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGV 130

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A Length = 336

 Score =  105 bits (264), Expect = 2e-26
 Identities = 29/138 (21%), Positives = 54/138 (39%), Gaps = 9/138 (6%)

Query: 169 DCGEIPEGADDGISNFFNDGDSYPDWPADLDQTPNELSWWMNAVDSIKVFGNEHYKKQDY 228
           +  +IP  A+          +   +     +    E    +     +K  G  ++K+  Y
Sbjct: 110 EKFQIPPNAELKYELHLKSFEKAKESW---EMNSEEK---LEQSTIVKERGTVYFKEGKY 163

Query: 229 KMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTE 288
           K AL +Y+K + +L+        +  K+ +LR        N + C LKL     A+    
Sbjct: 164 KQALLQYKKIVSWLEYESSFSNEEAQKAQALRLA---SHLNLAMCHLKLQAFSAAIESCN 220

Query: 289 FAMRDGDDNVKALFRQGQ 306
            A+    +N K L R+G+
Sbjct: 221 KALELDSNNEKGLSRRGE 238

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A Length = 457

 Score = 89.0 bits (220), Expect = 5e-20
 Identities = 24/119 (20%), Positives = 52/119 (43%), Gaps = 3/119 (2%)

Query: 193 DWPADLDQTPNELSWWMNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGID 252
            +    +    +    +     +K  G  ++K   Y  A+ +Y K + +L++ +   G+ 
Sbjct: 249 SFEKAKESWEMDTKEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEY---GLS 305

Query: 253 EGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQVSIIL 311
           E +S +        F N + C LKL +   A+   + A+     N K L+R+G+  +++
Sbjct: 306 EKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLM 364

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 148

 Score = 66.6 bits (163), Expect = 1e-13
 Identities = 32/119 (26%), Positives = 50/119 (42%), Gaps = 20/119 (16%)

Query: 188 GDSYPDWPADLDQTPNELSWWMNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWE 247
             S P  P     TP       ++V+ ++  GNE +K  DY  AL  Y +AL        
Sbjct: 9   TVSGPGTPEPRPATPGA-----SSVEQLRKEGNELFKCGDYGGALAAYTQALGL------ 57

Query: 248 KEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQ 306
                     +  + ++ +  N +AC LKL D   A  +   A+     +VKAL+R+ Q
Sbjct: 58  ---------DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRRSQ 107

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 Length = 118

 Score = 58.3 bits (142), Expect = 4e-11
 Identities = 21/98 (21%), Positives = 34/98 (34%), Gaps = 18/98 (18%)

Query: 209 MNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFT 268
           M  V+ +K  GN+     +   AL+ Y +A+                   L      +++
Sbjct: 1   MEQVNELKEKGNKALSVGNIDDALQCYSEAI------------------KLDPHNHVLYS 42

Query: 269 NSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQ 306
           N SA   K GD + A  D    +    D  K   R+  
Sbjct: 43  NRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAA 80

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} Length = 126

 Score = 58.0 bits (141), Expect = 7e-11
 Identities = 23/94 (24%), Positives = 40/94 (42%), Gaps = 18/94 (19%)

Query: 213 DSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSA 272
              K  GNE++KK DY  A+R Y +A++                       + +++N +A
Sbjct: 14  QEEKNKGNEYFKKGDYPTAMRHYNEAVK------------------RDPENAILYSNRAA 55

Query: 273 CKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQ 306
           C  KL + + AL D +  +R     +K   R+  
Sbjct: 56  CLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAA 89

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* Length = 137

 Score = 58.1 bits (141), Expect = 8e-11
 Identities = 22/94 (23%), Positives = 35/94 (37%), Gaps = 18/94 (19%)

Query: 213 DSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSA 272
             +K  GN  +  + Y  A   Y +A+                  +     +  +TN + 
Sbjct: 10  QELKEQGNRLFVGRKYPEAAACYGRAI------------------TRNPLVAVYYTNRAL 51

Query: 273 CKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQ 306
           C LK+   + AL D   A+     +VKA F  GQ
Sbjct: 52  CYLKMQQPEQALADCRRALELDGQSVKAHFFLGQ 85

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} Length = 133

 Score = 56.9 bits (138), Expect = 2e-10
 Identities = 21/94 (22%), Positives = 41/94 (43%), Gaps = 18/94 (19%)

Query: 213 DSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSA 272
             +K  GNE ++K DY  A++ Y +A++                       +++++N +A
Sbjct: 17  LMVKNKGNECFQKGDYPQAMKHYTEAIK------------------RNPKDAKLYSNRAA 58

Query: 273 CKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQ 306
           C  KL + + AL D E  ++     +K   R+  
Sbjct: 59  CYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAA 92

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A Length = 166

 Score = 57.8 bits (140), Expect = 2e-10
 Identities = 18/94 (19%), Positives = 37/94 (39%), Gaps = 18/94 (19%)

Query: 213 DSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSA 272
           + +K   N+++K +DY+ A++ Y +A+                   L  + +  + N S 
Sbjct: 14  EELKTQANDYFKAKDYENAIKFYSQAIE------------------LNPSNAIYYGNRSL 55

Query: 273 CKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQ 306
             L+      AL D   A+      +K  +R+  
Sbjct: 56  AYLRTECYGYALGDATRAIELDKKYIKGYYRRAA 89

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} Length = 111

 Score = 55.4 bits (134), Expect = 4e-10
 Identities = 15/97 (15%), Positives = 33/97 (34%), Gaps = 18/97 (18%)

Query: 209 MNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFT 268
           M+  +  K  GN  +K+  Y+ A+  Y + +                  + +      ++
Sbjct: 1   MSQFEKQKEQGNSLFKQGLYREAVHCYDQLI------------------TAQPQNPVGYS 42

Query: 269 NSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQG 305
           N +   +KLG+   A+   +  +R          R  
Sbjct: 43  NKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSK 79

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} Length = 126

 Score = 55.7 bits (135), Expect = 4e-10
 Identities = 16/94 (17%), Positives = 37/94 (39%), Gaps = 18/94 (19%)

Query: 213 DSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSA 272
           +  ++ G E++ K D+  A++ Y + ++                       ++ ++N +A
Sbjct: 5   EEARLEGKEYFTKSDWPNAVKAYTEMIK------------------RAPEDARGYSNRAA 46

Query: 273 CKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQ 306
              KL     A+ D   A+    + V+A  R+  
Sbjct: 47  ALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKAT 80

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 Length = 281

 Score = 58.0 bits (140), Expect = 7e-10
 Identities = 22/95 (23%), Positives = 34/95 (35%), Gaps = 18/95 (18%)

Query: 213 DSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSA 272
             +K  GN  +  + Y  A   Y +A+                        +  +TN + 
Sbjct: 5   QELKEQGNRLFVGRKYPEAAACYGRAIT------------------RNPLVAVYYTNRAL 46

Query: 273 CKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQV 307
           C LK+   + AL D   A+     +VKA F  GQ 
Sbjct: 47  CYLKMQQPEQALADCRRALELDGQSVKAHFFLGQC 81

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} Length = 164

 Score = 54.7 bits (132), Expect = 2e-09
 Identities = 21/94 (22%), Positives = 31/94 (32%), Gaps = 18/94 (19%)

Query: 213 DSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSA 272
           D +K  GN    +++Y  A+  Y +AL                  S+        +N +A
Sbjct: 12  DKLKSEGNAAMARKEYSKAIDLYTQAL------------------SIAPANPIYLSNRAA 53

Query: 273 CKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQ 306
                G  + A  D E A        KA  R G 
Sbjct: 54  AYSASGQHEKAAEDAELATVVDPKYSKAWSRLGL 87

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 Length = 131

 Score = 51.1 bits (123), Expect = 2e-08
 Identities = 25/94 (26%), Positives = 38/94 (40%), Gaps = 18/94 (19%)

Query: 213 DSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSA 272
           + +K  GNE  K ++++ A+  Y KA+                   L    +  F N +A
Sbjct: 13  ERLKTEGNEQMKVENFEAAVHFYGKAI------------------ELNPANAVYFCNRAA 54

Query: 273 CKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQ 306
              KLG+  GA+ D E A+       KA  R G 
Sbjct: 55  AYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGL 88

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A Length = 131

 Score = 49.2 bits (118), Expect = 9e-08
 Identities = 27/101 (26%), Positives = 35/101 (34%), Gaps = 25/101 (24%)

Query: 213 DSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSA 272
              K  GN+ YKK+D+  AL+ Y KA                    L  T     TN +A
Sbjct: 5   LKEKELGNDAYKKKDFDTALKHYDKAK------------------ELDPTNMTYITNQAA 46

Query: 273 CKLKLGDLKGALLDTEFAMRDGDDN-------VKALFRQGQ 306
              + GD        E A+  G +N        KA  R G 
Sbjct: 47  VYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIGN 87

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 Length = 477

 Score = 47.8 bits (114), Expect = 2e-06
 Identities = 19/100 (19%), Positives = 40/100 (40%), Gaps = 18/100 (18%)

Query: 213 DSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSA 272
           + +K   N+++K +DY+ A++ Y +A+                   L  + +  + N S 
Sbjct: 7   EELKTQANDYFKAKDYENAIKFYSQAI------------------ELNPSNAIYYGNRSL 48

Query: 273 CKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQVSIILL 312
             L+      AL D   A+      +K  +R+   ++ L 
Sbjct: 49  AYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALG 88

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} Length = 127

 Score = 43.4 bits (103), Expect = 1e-05
 Identities = 20/100 (20%), Positives = 34/100 (34%), Gaps = 25/100 (25%)

Query: 213 DSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSA 272
            + K  GN  YK++D++ A   Y KA+                   L  +    + N +A
Sbjct: 9   IAEKDLGNAAYKQKDFEKAHVHYDKAI------------------ELDPSNITFYNNKAA 50

Query: 273 CKLKLGDLKGALLDTEFAMRDGDDN-------VKALFRQG 305
              +       +   E A+  G +         KA+ R G
Sbjct: 51  VYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSRAG 90

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 44.7 bits (106), Expect = 2e-05
 Identities = 14/97 (14%), Positives = 29/97 (29%), Gaps = 14/97 (14%)

Query: 211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNS 270
            ++ +     E  +   Y  A  KY   ++           +     S+ +   +     
Sbjct: 256 KLNKLIESAEELIRDGRYTDATSKYESVMK----------TE----PSIAEYTVRSKERI 301

Query: 271 SACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQV 307
             C  K      A+      ++   DNV AL  + + 
Sbjct: 302 CHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRAEA 338

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 41.6 bits (98), Expect = 2e-04
 Identities = 13/89 (14%), Positives = 25/89 (28%), Gaps = 18/89 (20%)

Query: 219 GNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLG 278
           G +         AL ++  A+                           +   +   L +G
Sbjct: 33  GKKLLAAGQLADALSQFHAAV------------------DGDPDNYIAYYRRATVFLAMG 74

Query: 279 DLKGALLDTEFAMRDGDDNVKALFRQGQV 307
             K AL D    ++   D   A  ++G +
Sbjct: 75  KSKAALPDLTKVIQLKMDFTAARLQRGHL 103

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 43.3 bits (101), Expect = 7e-05
 Identities = 45/338 (13%), Positives = 93/338 (27%), Gaps = 104/338 (30%)

Query: 25  YNDVIPKTAENF-------------RALCTGE--KGIGPNTGVPLHYKGVRF-------- 61
           Y D++    + F             +++ + E    I           G           
Sbjct: 18  YKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHI---IMSKDAVSGTLRLFWTLLSK 74

Query: 62  -HRVIKGFMIQGGDISAGDGTGGESIYGL---KFEDENFELKHERKGMLSMANAGPNTNG 117
              +++ F+    ++   +       Y       + E  +     +  +   +     N 
Sbjct: 75  QEEMVQKFV---EEVLRIN-------YKFLMSPIKTEQRQPSMMTRMYIEQRD--RLYND 122

Query: 118 SQFFI--TTTR-------TSHL----DGKHVVFGRVIKGMG----------VVRS--IEH 152
           +Q F     +R          L      K+V+    I G+           V  S  ++ 
Sbjct: 123 NQVFAKYNVSRLQPYLKLRQALLELRPAKNVL----IDGVLGSGKTWVALDVCLSYKVQC 178

Query: 153 VMTGDNDCPIADVTITDCGEIPEGADDGISNFFNDGDSYPDWPADLDQTPNELSWWMNAV 212
            M    D  I  + + +C   PE   + +       D  P+W +  D + N         
Sbjct: 179 KM----DFKIFWLNLKNCNS-PETVLEMLQKLLYQID--PNWTSRSDHSSN--------- 222

Query: 213 DSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGID--EGKSSSLRKTKSQIFTNS 270
             IK+  +    +    +  + Y   L  L      +  +        L  T+ +  T+ 
Sbjct: 223 --IKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDF 280

Query: 271 ----SACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQ 304
               +   + L      L   E         VK+L  +
Sbjct: 281 LSAATTTHISLDHHSMTLTPDE---------VKSLLLK 309

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 42.8 bits (101), Expect = 8e-05
 Identities = 21/89 (23%), Positives = 35/89 (39%), Gaps = 19/89 (21%)

Query: 219 GNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLG 278
           GN+ ++ + Y  A++ Y  AL                     K     ++N SAC + +G
Sbjct: 13  GNQFFRNKKYDDAIKYYNWALEL-------------------KEDPVFYSNLSACYVSVG 53

Query: 279 DLKGALLDTEFAMRDGDDNVKALFRQGQV 307
           DLK  +  +  A+    D  K L R+   
Sbjct: 54  DLKKVVEMSTKALELKPDYSKVLLRRASA 82

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 39.7 bits (93), Expect = 8e-04
 Identities = 14/110 (12%), Positives = 31/110 (28%), Gaps = 19/110 (17%)

Query: 198 LDQTPNELSWWMNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSS 257
           LD+   +         S++  G   + K D   A    +KA+                  
Sbjct: 223 LDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIEL---------------- 266

Query: 258 SLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQV 307
                +   +   +       D        + A++   +N    + +GQ+
Sbjct: 267 ---FPRVNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQM 313

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 41.9 bits (99), Expect = 2e-04
 Identities = 14/97 (14%), Positives = 29/97 (29%), Gaps = 14/97 (14%)

Query: 211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNS 270
            ++ +     E  +   Y  A  KY   ++           +     S+ +   +     
Sbjct: 233 KLNKLIESAEELIRDGRYTDATSKYESVMK----------TE----PSVAEYTVRSKERI 278

Query: 271 SACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQV 307
             C  K      A+      ++   DNV AL  + + 
Sbjct: 279 CHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDRAEA 315

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 39.7 bits (93), Expect = 8e-04
 Identities = 20/89 (22%), Positives = 37/89 (41%), Gaps = 18/89 (20%)

Query: 219 GNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLG 278
           GN  +  +++  A++ Y+ A+                   L   +   ++N SAC +  G
Sbjct: 32  GNHFFTAKNFNEAIKYYQYAIE------------------LDPNEPVFYSNISACYISTG 73

Query: 279 DLKGALLDTEFAMRDGDDNVKALFRQGQV 307
           DL+  +  T  A+    D+ KAL R+   
Sbjct: 74  DLEKVIEFTTKALEIKPDHSKALLRRASA 102

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	312
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	100.0
1a58_A	177	Cyclophilin; isomerase, ppiase; 1.95A {Brugia mala	100.0
2wfi_A	179	Peptidyl-prolyl CIS-trans isomerase G; phosphoprot	100.0
2igv_A	173	Peptidyl-prolyl CIS-trans isomerase 3; rotamase; 1	100.0
2he9_A	192	NK-tumor recognition protein; cyclosporin, isomera	100.0
2z6w_A	165	Peptidyl-prolyl CIS-trans isomerase; isomerase-imm	100.0
2cmt_A	172	Peptidyl-prolyl CIS-trans isomerase E; rotamase ac	100.0
2poy_A	186	Peptidyl-prolyl CIS-trans isomerase; isomerase-imm	100.0
3pmp_A	164	Cyclophilin A; peptidyl prolyl isomerase, isomeras	100.0
1mzw_A	177	Cyclophilin H, U-snRNP-ASSOCIATED cyclophilin; cyc	100.0
2haq_A	172	Cyclophilin; rotamase, proline, isomerase, CIS-tra	100.0
2r99_A	173	Peptidyl-prolyl CIS-trans isomerase E; CIS-trans i	100.0
1qng_A	170	Peptidyl-prolyl CIS-trans isomerase; isomerase-imm	100.0
3ich_A	188	Peptidyl-prolyl CIS-trans isomerase B; beta sandwi	100.0
3rdd_A	184	Peptidyl-prolyl CIS-trans isomerase A; beta barrel	100.0
3k2c_A	193	Peptidyl-prolyl CIS-trans isomerase; ssgcid, NIH,	100.0
1z81_A	229	Cyclophilin; structural genomics, structural genom	100.0
4fru_A	185	Cyclophilin B, peptidyl-prolyl CIS-trans isomerase	100.0
2ose_A	234	Probable peptidyl-prolyl CIS-trans isomerase; cycl	100.0
2c3b_A	172	Ppiase, cyclophilin; isomerase, 3D domain swapping	100.0
2poe_A	185	Cyclophilin-like protein, putative; cryptosporidiu	100.0
2ok3_A	161	Peptidyl-prolyl CIS-trans isomerase-like 3; beta-b	100.0
1zkc_A	197	Peptidyl-prolyl CIS-trans isomerase like 2; CIS-tr	100.0
2x7k_A	166	Peptidyl-prolyl CIS-trans isomerase-like 1; isomer	100.0
2b71_A	196	Cyclophilin-like protein; structural genomics, str	100.0
3bo7_A	201	Peptidyl-prolyl CIS-trans isomerase cyclophilin-T;	100.0
2fu0_A	160	Cyclophilin, putative; PFE0505W, cyclosporin-bindi	100.0
2k7n_A	203	Peptidyl-prolyl CIS-trans isomerase-like 1; beta b	100.0
2hq6_A	185	Serologically defined colon cancer antigen 10; pro	100.0
1w74_A	191	Peptidyl-prolyl CIS-trans isomerase A; cyclophilin	100.0
2a2n_A	176	Peptidylprolyl isomerase domain and WD repeat CON;	100.0
3bkp_A	232	Cyclophilin; malaria, isomerase, structural GENO s	100.0
1v9t_A	166	Cyclophilin B; beta barrel, isomerase-isomerase in	100.0
3s6m_A	167	Peptidyl-prolyl CIS-trans isomerase; seattle struc	100.0
1lop_A	164	Cyclophilin A; rotamase, isomerase-isomerase inhib	100.0
3rfy_A	369	Peptidyl-prolyl CIS-trans isomerase CYP38, chloro;	100.0
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	99.71
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	99.62
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	99.61
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	99.5
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	99.4
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	99.4
2l6j_A	111	TPR repeat-containing protein associated with HSP;	99.35
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	99.33
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	99.31
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	99.29
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	99.29
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	99.23
4ga2_A	150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	99.17
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	99.17
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	99.16
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	99.14
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	99.14
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	99.12
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	99.1
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	99.1
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	99.05
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	99.04
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	99.03
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	99.01
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	98.97
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	98.97
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	98.96
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	98.95
4ga2_A	150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	98.93
4gyw_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	98.92
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	98.92
4i17_A	228	Hypothetical protein; TPR repeats protein, structu	98.92
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	98.91
3k9i_A	117	BH0479 protein; putative protein binding protein,	98.91
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	98.89
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	98.89
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	98.88
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	98.87
3vtx_A	184	MAMA; tetratricopeptide repeats (TPR) containing p	98.86
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	98.86
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	98.86
1zu2_A	158	Mitochondrial import receptor subunit TOM20-3; TPR	98.84
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	98.83
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	98.83
4gyw_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	98.83
2gw1_A	514	Mitochondrial precursor proteins import receptor;	98.82
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	98.82
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	98.81
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	98.8
2v5f_A	104	Prolyl 4-hydroxylase subunit alpha-1; endoplasmic	98.78
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	98.78
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	98.77
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	98.76
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	98.74
3vtx_A	184	MAMA; tetratricopeptide repeats (TPR) containing p	98.74
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	98.73
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	98.73
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	98.73
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	98.72
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	98.71
3k9i_A	117	BH0479 protein; putative protein binding protein,	98.7
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	98.68
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	98.68
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	98.67
1zu2_A	158	Mitochondrial import receptor subunit TOM20-3; TPR	98.66
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	98.66
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	98.66
2yhc_A	225	BAMD, UPF0169 lipoprotein YFIO; essential BAM comp	98.66
4i17_A	228	Hypothetical protein; TPR repeats protein, structu	98.65
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	98.62
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	98.61
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	98.61
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	98.6
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	98.6
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	98.59
3qky_A	261	Outer membrane assembly lipoprotein YFIO; membrane	98.58
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	98.57
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	98.54
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	98.54
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	98.54
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	98.54
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	98.53
3u3w_A	293	Transcriptional activator PLCR protein; ternary co	98.53
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	98.51
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	98.5
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	98.49
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	98.49
2kat_A	115	Uncharacterized protein; NESG, structure, structur	98.47
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	98.46
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	98.46
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	98.46
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	98.46
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	98.46
3u4t_A	272	TPR repeat-containing protein; structural genomics	98.45
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	98.44
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	98.44
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	98.44
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	98.43
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	98.42
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	98.42
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	98.42
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	98.42
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	98.41
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	98.4
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	98.4
2kat_A	115	Uncharacterized protein; NESG, structure, structur	98.4
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	98.4
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	98.37
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	98.36
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	98.35
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	98.35
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	98.34
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	98.34
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	98.33
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	98.33
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	98.32
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	98.3
3qky_A	261	Outer membrane assembly lipoprotein YFIO; membrane	98.29
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	98.29
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	98.28
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	98.28
1pc2_A	152	Mitochondria fission protein; unknown function; NM	98.27
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	98.27
3u4t_A	272	TPR repeat-containing protein; structural genomics	98.27
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	98.26
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	98.26
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	98.25
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	98.25
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	98.24
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	98.24
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	98.23
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	98.19
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	98.18
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	98.17
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	98.17
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	98.16
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	98.16
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	98.12
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	98.11
4g1t_A	472	Interferon-induced protein with tetratricopeptide	98.1
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	98.07
4g1t_A	472	Interferon-induced protein with tetratricopeptide	98.07
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	98.04
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	98.03
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	98.03
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	98.03
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	98.01
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	98.0
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	98.0
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	97.97
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	97.96
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	97.96
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	97.93
2yhc_A	225	BAMD, UPF0169 lipoprotein YFIO; essential BAM comp	97.92
2gw1_A	514	Mitochondrial precursor proteins import receptor;	97.91
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	97.91
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	97.9
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	97.89
3dra_A	306	Protein farnesyltransferase/geranylgeranyltransfer	97.87
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	97.86
2l6j_A	111	TPR repeat-containing protein associated with HSP;	97.84
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	97.84
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	97.84
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	97.79
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	97.77
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	97.77
3dra_A	306	Protein farnesyltransferase/geranylgeranyltransfer	97.76
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	97.75
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	97.72
3bee_A	93	Putative YFRE protein; putaive YFRE protein, struc	97.71
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	97.69
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	97.66
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	97.66
3u3w_A	293	Transcriptional activator PLCR protein; ternary co	97.63
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	97.63
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	97.62
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	97.6
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	97.6
3rjv_A	212	Putative SEL1 repeat protein; alpha-alpha superhel	97.59
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	97.59
3q7a_A	349	Farnesyltransferase alpha subunit; protein prenylt	97.58
4f3v_A	282	ESX-1 secretion system protein ECCA1; tetratricope	97.58
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	97.53
3q7a_A	349	Farnesyltransferase alpha subunit; protein prenylt	97.5
3dss_A	331	Geranylgeranyl transferase type-2 subunit alpha; p	97.5
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	97.49
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	97.47
3rjv_A	212	Putative SEL1 repeat protein; alpha-alpha superhel	97.45
3dss_A	331	Geranylgeranyl transferase type-2 subunit alpha; p	97.44
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	97.37
1nzn_A	126	CGI-135 protein, fission protein FIS1P; TPR, unkno	97.29
3o48_A	134	Mitochondria fission 1 protein; tetratricopeptide	97.26
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	97.13
4f3v_A	282	ESX-1 secretion system protein ECCA1; tetratricope	97.13
4b4t_Q	434	26S proteasome regulatory subunit RPN6; hydrolase,	97.08
1y8m_A	144	FIS1; mitochondria, unknown function; NMR {Sacchar	97.05
1klx_A	138	Cysteine rich protein B; structural genomics, heli	97.01
3ffl_A	167	Anaphase-promoting complex subunit 7; tetratricope	96.97
1klx_A	138	Cysteine rich protein B; structural genomics, heli	96.64
4b4t_Q	434	26S proteasome regulatory subunit RPN6; hydrolase,	96.45
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	96.41
3e4b_A	452	ALGK; tetratricopeptide repeat, superhelix, algina	96.38
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	96.36
1b89_A	449	Protein (clathrin heavy chain); triskelion, coated	96.35
2xm6_A	490	Protein corresponding to locus C5321 from CFT073 s	96.34
1b89_A	449	Protein (clathrin heavy chain); triskelion, coated	96.28
2xm6_A	490	Protein corresponding to locus C5321 from CFT073 s	96.13
3e4b_A	452	ALGK; tetratricopeptide repeat, superhelix, algina	96.13
2ff4_A	388	Probable regulatory protein EMBR; winged-helix, te	96.05
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	95.82
3bee_A	93	Putative YFRE protein; putaive YFRE protein, struc	95.66
1pc2_A	152	Mitochondria fission protein; unknown function; NM	95.66
3ffl_A	167	Anaphase-promoting complex subunit 7; tetratricope	95.65
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	95.62
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	95.52
3mv2_B	310	Coatomer subunit epsilon; vesicular membrane coat	95.43
3mv2_B	310	Coatomer subunit epsilon; vesicular membrane coat	95.17
2w2u_A	83	Hypothetical P60 katanin; hydrolase transport comp	94.89
3u64_A	301	Protein TP_0956; tetratrico peptide repeat, protei	94.69
2v6y_A	83	AAA family ATPase, P60 katanin; MIT, VPS4, archaea	94.61
2cpt_A	117	SKD1 protein, vacuolar sorting protein 4B; MIT, he	94.36
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	94.3
3kop_A	188	Uncharacterized protein; protein with A cyclophili	94.23
4gns_B	754	Protein CSD3, chitin biosynthesis protein CHS6; FN	94.14
1wfd_A	93	Hypothetical protein 1500032H18; MIT domain, struc	93.33
4a5x_A	86	MITD1, MIT domain-containing protein 1; protein tr	92.86
4gns_B	754	Protein CSD3, chitin biosynthesis protein CHS6; FN	92.76
2v6x_A	85	Vacuolar protein sorting-associated protein 4; pro	92.55
2nnz_A	153	Hypothetical protein; beta-barrel, structural geno	92.42
2v5f_A	104	Prolyl 4-hydroxylase subunit alpha-1; endoplasmic	92.09
3u64_A	301	Protein TP_0956; tetratrico peptide repeat, protei	91.44
3mv2_A	325	Coatomer subunit alpha; vesicular membrane coat CO	91.2
2dl1_A	116	Spartin; SPG20, MIT, structural genomics, NPPSFA,	88.43
3mkr_B	320	Coatomer subunit alpha; tetratricopeptide repeats	86.57
4b4t_R	429	RPN7, 26S proteasome regulatory subunit RPN7; hydr	86.02
2crb_A	97	Nuclear receptor binding factor 2; NRBF-2, MIT dom	85.34
1zbp_A	273	Hypothetical protein VPA1032; alpha-beta protein,	83.96
2vkj_A	106	TM1634; membrane protein, TPR motif joint center f	80.44
2wb7_A	526	PT26-6P; extra chromosomal elements, unknown funct	80.39
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	80.37
3txn_A	394	26S proteasome regulatory complex subunit P42B; PC	80.33

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=100.00  E-value=1.3e-66  Score=483.44  Aligned_cols=306  Identities=51%  Similarity=0.838  Sum_probs=282.3

Q ss_pred             CCeEEEEEEECCeeeeEEEEEEeCCCCchhHHhHHHHhhCCCCCCCCCCCCceecCCEEEEeecCCeEEeCCCCCCCCCC
Q 021445            3 RPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRVIKGFMIQGGDISAGDGTG   82 (312)
Q Consensus         3 ~~~v~~d~~~~~~~~G~i~ieL~~~~aP~~~~nF~~l~~~~~~~~~~~~~~~~Y~g~~~~rv~~~~~iq~G~~~~~~~~~   82 (312)
                      +|+|||||+|++++.|+|+|+||++.||+||+||++||++.++++..+|+++||+|+.||||+|+|||||||+..++|+|
T Consensus        15 ~~~v~~~~~~~~~~~G~i~~~l~~~~~P~t~~nf~~l~~~~~~~~~~~g~~~~y~~~~fhrv~~~f~~q~Gd~~~~~g~g   94 (370)
T 1ihg_A           15 NPRVFFDVDIGGERVGRIVLELFADIVPKTAENFRALCTGEKGIGPTTGKPLHFKGCPFHRIIKKFMIQGGDFSNQNGTG   94 (370)
T ss_dssp             SCEEEEEEEETTEEEEEEEEEECTTTCHHHHHHHHHHHHCTTCBCTTTSSBSCCTTCBEEEEETTTEEEECCTTTSSSSC
T ss_pred             CCeEEEEEEECCEecccEEEEEcCCCCchHHHHHHHHcCCCcCcCccCCCcceeCCcEeEEEECCcEEECCCCCCCCCCC
Confidence            89999999999999999999999999999999999999998877766677779999999999999999999999888999


Q ss_pred             CCcccCCCCCCCcccccCCCcceEEeecCCCCCCCceEEEecCCCCCCCCCCceEEEEEeChHHHHHHhcccCCCCCCcc
Q 021445           83 GESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFFITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPI  162 (312)
Q Consensus        83 ~~~~~~~~~~~e~~~~~~~~~G~l~~~~~~~~~~~sqF~I~~~~~~~ld~~~~vfG~V~~G~~vl~~i~~~~~~~~~~P~  162 (312)
                      ++++||.+|++|++.++|+++|+|||++.||+++|||||||+++.++||++|+|||+|++||+|+++|+..+++. ++|.
T Consensus        95 ~~~~~~~~~~~e~~~~~~~~~g~l~ma~~~~~~~~sqffi~~~~~~~ld~~~~vfG~v~~g~~v~~~i~~~~~~~-~~P~  173 (370)
T 1ihg_A           95 GESIYGEKFEDENFHYKHDKEGLLSMANAGSNTNGSQFFITTVPTPHLDGKHVVFGQVIKGMGVAKILENVEVKG-EKPA  173 (370)
T ss_dssp             CCBTTBSCBCCCCCCBCCCSTTEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTSCEET-TEES
T ss_pred             CCCCCCCCcCCCcCCcCCCCCeEEEEeeCCCCCCCceEEEeCCCCcccCCCceEEEEEecCHHHHHHHHcCCCCC-Cccc
Confidence            999999999999999999999999999999999999999999999999999999999999999999999999887 8999


Q ss_pred             cceEEeeeeeeCCCCCCCCCccCCCCCCCCCCCCCCCCCCCChhhhhhhhhhhHhhhhhHHhhhcHHHHHHHHHHHHHHh
Q 021445          163 ADVTITDCGEIPEGADDGISNFFNDGDSYPDWPADLDQTPNELSWWMNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYL  242 (312)
Q Consensus       163 ~~i~I~~~g~l~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~k~~Gn~~~~~~~y~~A~~~Y~kal~~l  242 (312)
                      .+|+|.+|+++..+..+.....+...+.|+++++++.....+.++.++.+..++..|+.+++.|+|++|+..|++||+++
T Consensus       174 ~~v~I~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~  253 (370)
T 1ihg_A          174 KLCVIAECGELKEGDDWGIFPKDGSGDSHPDFPEDADVDLKDVDKILLISEDLKNIGNTFFKSQNWEMAIKKYTKVLRYV  253 (370)
T ss_dssp             SCEEEEEEEEECTTCCCCCSCCSSSCCCSCSSGGGSSSCTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             eeEEEEEEEEeccCccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh
Confidence            99999999999887777665556789999999999987777899999999999999999999999999999999999976


Q ss_pred             hhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHhhhh
Q 021445          243 DICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQVSIIL  311 (312)
Q Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~l~p~~~Ka~~rrg~a~~~L  311 (312)
                      ...+  .....++...+.+....+|.|+|.||+++++|++|+.+|++||+++|.++++|+++|.+|..+
T Consensus       254 ~~~~--~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~  320 (370)
T 1ihg_A          254 EGSR--AAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGL  320 (370)
T ss_dssp             HHHH--HHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHT
T ss_pred             hcCc--cccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHc
Confidence            5542  122334444578889999999999999999999999999999999999999999999999875

>1a58_A Cyclophilin; isomerase, ppiase; 1.95A {Brugia malayi} SCOP: b.62.1.1 PDB: 1a33_A 1c5f_A*

Probab=100.00  E-value=2.6e-53  Score=351.32  Aligned_cols=171  Identities=59%  Similarity=1.014  Sum_probs=163.0

Q ss_pred             CCeEEEEEEECCeeeeEEEEEEeCCCCchhHHhHHHHhhCCCCCCCCCCCCceecCCEEEEeecCCeEEeCCCCCCCCCC
Q 021445            3 RPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRVIKGFMIQGGDISAGDGTG   82 (312)
Q Consensus         3 ~~~v~~d~~~~~~~~G~i~ieL~~~~aP~~~~nF~~l~~~~~~~~~~~~~~~~Y~g~~~~rv~~~~~iq~G~~~~~~~~~   82 (312)
                      ||+|||||++++++.|+|+||||++.||+||+||++||++.++.+..+++++||+|+.||||+|+|+|||||+..++|++
T Consensus         6 ~~~v~~di~i~~~~~G~i~ieL~~~~aP~t~~NF~~L~~~~~g~~~~~g~~~~Y~g~~FhRvi~~f~iQgGd~~~~~g~g   85 (177)
T 1a58_A            6 RRRVFLDVTIDGNLAGRIVMELYNDIAPRTCNNFLMLCTGMAGTGKISGKPLHYKGSTFHRVIKNFMIQGGDFTKGDGTG   85 (177)
T ss_dssp             CEEEEEEEEETTEEEEEEEEEECTTTCHHHHHHHHHHHHCTTCBCTTTCSBCCCTTCBEEEEETTTEEEECCCSSSSSSC
T ss_pred             CcEEEEEEEECCEeceeEEEEEcCCCCchHHHHHHHHhcCCcCcccccCCcceeCCCEEEEEECCCEEEeCCccCCCCCC
Confidence            89999999999999999999999999999999999999987665544566679999999999999999999998788999


Q ss_pred             CCcccCCCCCCCcccccCCCcceEEeecCCCCCCCceEEEecCCCCCCCCCCceEEEEEeChHHHHHHhcccCCCCCCcc
Q 021445           83 GESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFFITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPI  162 (312)
Q Consensus        83 ~~~~~~~~~~~e~~~~~~~~~G~l~~~~~~~~~~~sqF~I~~~~~~~ld~~~~vfG~V~~G~~vl~~i~~~~~~~~~~P~  162 (312)
                      ++++||..|++|++.++|+++|+||||+.+|++++|||||++.+.++||++|+|||+|++||+||++|+.++++.+++|.
T Consensus        86 g~si~g~~f~dE~~~~~h~~~G~lsmAn~gp~tngSQFfIt~~~~~~LDg~~~VFG~Vv~G~dvv~~I~~~~~~~~~~P~  165 (177)
T 1a58_A           86 GESIYGGMFDDEEFVMKHDEPFVVSMANKGPNTNGSQFFITTTPAPHLNNIHVVFGKVVSGQEVVTKIEYLKTNSKNRPL  165 (177)
T ss_dssp             CCCTTSSCBCCCCCCSCCCSSSEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTSCBCTTSCBS
T ss_pred             CCcccCCcccCcccCcccCCCeEEEEeeCCCCCceeEEEEECCCCCccCCCEEEEEEEEcCHHHHHHHHhCCCCCCCcCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999889999


Q ss_pred             cceEEeeeeee
Q 021445          163 ADVTITDCGEI  173 (312)
Q Consensus       163 ~~i~I~~~g~l  173 (312)
                      .+|+|.+||++
T Consensus       166 ~~v~I~~~G~l  176 (177)
T 1a58_A          166 ADVVILNCGEL  176 (177)
T ss_dssp             SCEEEEEEEEE
T ss_pred             CCeEEEEeEEE
Confidence            99999999997

>2wfi_A Peptidyl-prolyl CIS-trans isomerase G; phosphoprotein, PRE-mRNA splicing, alternative splicing, nucleus, rotamase, cyclosporin; HET: OCS; 0.75A {Homo sapiens} PDB: 2wfj_A* 2gw2_A

Probab=100.00  E-value=3e-53  Score=351.25  Aligned_cols=171  Identities=61%  Similarity=1.036  Sum_probs=164.5

Q ss_pred             CCeEEEEEEECCeeeeEEEEEEeCCCCchhHHhHHHHhhCCCCCCCCCCCCceecCCEEEEeecCCeEEeCCCCCCCCCC
Q 021445            3 RPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRVIKGFMIQGGDISAGDGTG   82 (312)
Q Consensus         3 ~~~v~~d~~~~~~~~G~i~ieL~~~~aP~~~~nF~~l~~~~~~~~~~~~~~~~Y~g~~~~rv~~~~~iq~G~~~~~~~~~   82 (312)
                      ||+||||+++++++.|+|+|+||++.||+||+||++||++.++.+..+++++||+|+.||||+|+|+|||||+..++|++
T Consensus         9 ~~~vf~di~i~~t~~G~i~ieL~~~~aP~t~~NF~~L~~g~~g~~~~~~~~~~Y~g~~FhRvi~~f~iQgGd~~~~~g~g   88 (179)
T 2wfi_A            9 RPRCFFDIAINNQPAGRVVFELFSDVCPKTCENFRCLCTGEKGTGKSTQKPLHYKSCLFHRVVKDFMVQGGDFSEGNGRG   88 (179)
T ss_dssp             CCEEEEEEEETTEEEEEEEEEECTTTCHHHHHHHHHHHHCTTCBCTTTCSBSCCTTCBEEEEETTTEEEECCTTTSSSSC
T ss_pred             CCeEEEEEEECCccceEEEEEEcCCCCChHHHHHHHHhcCCcCcccccccCCeECCCEEEEEECCCEEEcccccCCCCCC
Confidence            99999999999999999999999999999999999999998877666777889999999999999999999998788999


Q ss_pred             CCcccCCCCCCCcccccCCCcceEEeecCCCCCCCceEEEecCCCCCCCCCCceEEEEEeChHHHHHHhcccCCCCCCcc
Q 021445           83 GESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFFITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPI  162 (312)
Q Consensus        83 ~~~~~~~~~~~e~~~~~~~~~G~l~~~~~~~~~~~sqF~I~~~~~~~ld~~~~vfG~V~~G~~vl~~i~~~~~~~~~~P~  162 (312)
                      ++++||..|++|++.++|+++|+||||+.+|++++|||||++.+.|+||++|+|||+|++||+||++|+.++++.+++|.
T Consensus        89 g~si~g~~f~dE~~~~~h~~~G~lsMAn~gp~tngSQFfIt~~~~~~LDg~~tVFG~Vv~G~dvv~~I~~~~t~~~~~P~  168 (179)
T 2wfi_A           89 GESIYGGFFEDESFAVKHNKEFLLSMANRGKDTNGSQFFITTKPTPHLDGHHVVFGQVISGQEVVREIENQKTDAASKPF  168 (179)
T ss_dssp             CCCTTSSCBCCCCCCSCCCSTTEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTCCBCTTSCBS
T ss_pred             CCcccCCcccccccCcCcCCCeEEEEEeCCCCCcceEEEEEcCCCcccCCCeeEEEEEeCCHHHHHHHHcCCCCCCCCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999889999


Q ss_pred             cceEEeeeeee
Q 021445          163 ADVTITDCGEI  173 (312)
Q Consensus       163 ~~i~I~~~g~l  173 (312)
                      .+|+|.+||+|
T Consensus       169 ~~v~I~~~G~l  179 (179)
T 2wfi_A          169 AEVRILSCGEL  179 (179)
T ss_dssp             SCEEEEEEEEC
T ss_pred             CCeEEEeCeeC
Confidence            99999999986

>2igv_A Peptidyl-prolyl CIS-trans isomerase 3; rotamase; 1.67A {Caenorhabditis elegans} SCOP: b.62.1.1 PDB: 1e3b_A 1e8k_A 1dyw_A 2igw_A 2hqj_A

Probab=100.00  E-value=4.6e-53  Score=348.56  Aligned_cols=172  Identities=61%  Similarity=1.093  Sum_probs=162.2

Q ss_pred             CCCCeEEEEEEECCeeeeEEEEEEeCCCCchhHHhHHHHhhCCCCCCCCCCCCceecCCEEEEeecCCeEEeCCCCCCCC
Q 021445            1 MARPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRVIKGFMIQGGDISAGDG   80 (312)
Q Consensus         1 ~~~~~v~~d~~~~~~~~G~i~ieL~~~~aP~~~~nF~~l~~~~~~~~~~~~~~~~Y~g~~~~rv~~~~~iq~G~~~~~~~   80 (312)
                      |.||+||||+++++++.|+|+||||++.||+||+||++||++.++.+. .++++||+|+.||||+|+|||||||+..++|
T Consensus         1 ~~~~~v~~di~i~~~~~G~i~ieL~~~~aP~t~~NF~~L~~~~~g~g~-~~~~~~Y~g~~FhRvi~~f~iQgGd~~~~~G   79 (173)
T 2igv_A            1 MSRSKVFFDITIGGKASGRIVMELYDDVVPKTAGNFRALCTGENGIGK-SGKPLHFKGSKFHRIIPNFMIQGGDFTRGNG   79 (173)
T ss_dssp             CCCCEEEEEEEETTEEEEEEEEEECTTTCHHHHHHHHHHHHTTTCBCT-TSSBSCCTTCBCCEEETTTEEEECCTTTSSS
T ss_pred             CCCCEEEEEEEECCEecceEEEEEeCCCCcHHHHHHHHHhcCCCCCCc-cCccceECCCEEEEEECCCEEEcCCCCCCCC
Confidence            899999999999999999999999999999999999999998655442 4677799999999999999999999987889


Q ss_pred             CCCCcccCCCCCCCcccccCCCcceEEeecCCCCCCCceEEEecCCCCCCCCCCceEEEEEeChHHHHHHhcccCCCCCC
Q 021445           81 TGGESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFFITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDC  160 (312)
Q Consensus        81 ~~~~~~~~~~~~~e~~~~~~~~~G~l~~~~~~~~~~~sqF~I~~~~~~~ld~~~~vfG~V~~G~~vl~~i~~~~~~~~~~  160 (312)
                      +++.++||.+|++|++.++|.++|+||||+.+|++++|||||++.+.++||++|+|||+|++||+||++|+.+++.. ++
T Consensus        80 ~gg~siyg~~f~dE~~~l~h~~~G~lsmAn~gp~tngSQFfIt~~~~~~LDg~~~vFG~Vv~G~dvv~~I~~~~t~~-~~  158 (173)
T 2igv_A           80 TGGESIYGEKFPDENFKEKHTGPGVLSMANAGPNTNGSQFFLCTVKTEWLDGKHVVFGRVVEGLDVVKAVESNGSQS-GK  158 (173)
T ss_dssp             SCCCBTTBSCBCCCCCCSCCCSTTEEEECCSSTTCBSSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTTCCTT-SC
T ss_pred             CCCCccCCCcccCcccccCCCCCeEEEEeeCCCCCcceEEEEEcCCccccCCCeeEEEEEecCHHHHHHHHhCCCCC-CC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999998854 89


Q ss_pred             cccceEEeeeeeeC
Q 021445          161 PIADVTITDCGEIP  174 (312)
Q Consensus       161 P~~~i~I~~~g~l~  174 (312)
                      |..+|+|.+||++.
T Consensus       159 P~~~v~I~~~g~l~  172 (173)
T 2igv_A          159 PVKDCMIADCGQLK  172 (173)
T ss_dssp             CSSCEEEEEEEEEC
T ss_pred             CCCCEEEEEeEEEc
Confidence            99999999999984

>2he9_A NK-tumor recognition protein; cyclosporin, isomerase, membrane, repeat, rotamase, peptidylprolyl isomerase, structural genomics; 2.00A {Homo sapiens}

Probab=100.00  E-value=6.3e-53  Score=352.10  Aligned_cols=174  Identities=56%  Similarity=0.961  Sum_probs=165.5

Q ss_pred             CCCCeEEEEEEECCeeeeEEEEEEeCCCCchhHHhHHHHhhCCCCCCCCCCCCceecCCEEEEeecCCeEEeCCCCCCCC
Q 021445            1 MARPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRVIKGFMIQGGDISAGDG   80 (312)
Q Consensus         1 ~~~~~v~~d~~~~~~~~G~i~ieL~~~~aP~~~~nF~~l~~~~~~~~~~~~~~~~Y~g~~~~rv~~~~~iq~G~~~~~~~   80 (312)
                      +.+|+||||+++++++.|+|+||||++.||+||+||++||++.++.+..+++.+||+|+.||||+|+|||||||+..++|
T Consensus        17 ~~~~~vf~di~i~~t~~G~I~ieL~~~~aP~t~~NF~~L~~g~~g~~~~~~k~~~Y~g~~FhRVi~~fmiQgGd~~~~~G   96 (192)
T 2he9_A           17 RGSPQCHFDIEINREPVGRIMFQLFSDICPKTCKNFLCLCSGEKGLGKTTGKKLCYKGSTFHRVVKNFMIQGGDFSEGNG   96 (192)
T ss_dssp             --CCEEEEEEEETTEEEEEEEEEECTTTCHHHHHHHHHHHHCTTCBCTTTCSBSCCTTCBEEEEETTTEEEECCTTTSSS
T ss_pred             cCCCeEEEEEEECCEecceEEEEEcCCCCchHHHHHHHHhcCCCCcccccccCCeECCCEEEEEECCCEEEcCcccCCCC
Confidence            35899999999999999999999999999999999999999988777667778899999999999999999999987889


Q ss_pred             CCCCcccCCCCCCCcccccCCCcceEEeecCCCCCCCceEEEecCCCCCCCCCCceEEEEEeChHHHHHHhcccCCCCCC
Q 021445           81 TGGESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFFITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDC  160 (312)
Q Consensus        81 ~~~~~~~~~~~~~e~~~~~~~~~G~l~~~~~~~~~~~sqF~I~~~~~~~ld~~~~vfG~V~~G~~vl~~i~~~~~~~~~~  160 (312)
                      ++++++||.+|++|++.++|+++|+||||+.+|++++||||||+.+.++||++|+|||+|++||+||++|+.++++.+++
T Consensus        97 ~gg~siyg~~f~dE~~~l~h~~~G~lsMAn~gp~tngSQFFIt~~~~~~LDg~~tVFG~Vv~Gmdvv~~I~~~~t~~~~~  176 (192)
T 2he9_A           97 KGGESIYGGYFKDENFILKHDRAFLLSMANRGKHTNGSQFFITTKPAPHLDGVHVVFGLVISGFEVIEQIENLKTDAASR  176 (192)
T ss_dssp             SCCCCTTSSCBCCCCCCSCCCSTTEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTSCBCTTSC
T ss_pred             CCCCcccCCcccCccccCCCCCCeEEEEEeCCCCCcceEEEEEcCCCcccCCCccEEEEEEeCHHHHHHHHcCCcCCCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999998899


Q ss_pred             cccceEEeeeeeeC
Q 021445          161 PIADVTITDCGEIP  174 (312)
Q Consensus       161 P~~~i~I~~~g~l~  174 (312)
                      |..+|+|.+||++.
T Consensus       177 P~~~v~I~~~g~l~  190 (192)
T 2he9_A          177 PYADVRVIDCGVLA  190 (192)
T ss_dssp             BSSCEEEEEEEECC
T ss_pred             CcCCeEEEEeEEEc
Confidence            99999999999985

>2z6w_A Peptidyl-prolyl CIS-trans isomerase; isomerase-immunosuppressant complex, immunosuppressant, cyclophilin D; HET: BMT MLE CIT; 0.96A {Homo sapiens} SCOP: b.62.1.1 PDB: 3rcg_A* 3r49_A* 3r54_A 3r56_A* 3r57_A* 3r59_A* 3rcf_A* 3r4g_A* 3rci_X* 3rck_X* 3rcl_A* 3rd9_X* 3rda_X* 3rdb_A* 3rdc_A* 2bit_X 2biu_X 3qyu_A 3k0m_A 1ak4_A* ...

Probab=100.00  E-value=1.1e-51  Score=337.68  Aligned_cols=163  Identities=59%  Similarity=0.983  Sum_probs=154.7

Q ss_pred             CCCCeEEEEEEECCeeeeEEEEEEeCCCCchhHHhHHHHhhCCCCCCCCCCCCce-ecCCEEEEeecCCeEEeCCCCCCC
Q 021445            1 MARPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLH-YKGVRFHRVIKGFMIQGGDISAGD   79 (312)
Q Consensus         1 ~~~~~v~~d~~~~~~~~G~i~ieL~~~~aP~~~~nF~~l~~~~~~~~~~~~~~~~-Y~g~~~~rv~~~~~iq~G~~~~~~   79 (312)
                      |.||+||||+++++++.|+|+||||++.||+||+||++||++.++         | |+|+.||||+|+|+|||||+..++
T Consensus         1 ~~~~~v~~di~i~~t~~G~i~ieL~~~~aP~t~~NF~~L~~g~~g---------~~Y~g~~fhRvi~~f~iQgGd~~~~~   71 (165)
T 2z6w_A            1 MGNPLVYLDVDANGKPLGRVVLELKADVVPKTAENFRALCTGEKG---------FGYKGSTFHRVIPSFMCQAGDFTNHN   71 (165)
T ss_dssp             -CCCEEEEEEEETTEEEEEEEEEECTTTCHHHHHHHHHHHHTTTS---------CCSTTCBEEEEETTTEEEECCTTTSS
T ss_pred             CCCCEEEEEEEECCEeeeEEEEEEeCCCCcHHHHHHHHHhccCCC---------ccCcCCEEEEEECCCEEEeCCccCCC
Confidence            889999999999999999999999999999999999999996532         7 999999999999999999998788


Q ss_pred             CCCCCcccCCCCCCCcccccCCCcceEEeecCCCCCCCceEEEecCCCCCCCCCCceEEEEEeChHHHHHHhcccCCCCC
Q 021445           80 GTGGESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFFITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDND  159 (312)
Q Consensus        80 ~~~~~~~~~~~~~~e~~~~~~~~~G~l~~~~~~~~~~~sqF~I~~~~~~~ld~~~~vfG~V~~G~~vl~~i~~~~~~~~~  159 (312)
                      |+++.++||.+|++|+..++|.++|+||||+.+|++++|||||++.+.++||++|+|||+|++||+||++|+.+++ .++
T Consensus        72 g~gg~si~g~~f~dE~~~l~h~~~G~lsmA~~gp~s~~SQFfI~~~~~~~Ldg~~~vFG~Vv~G~dvv~~I~~~~~-~~~  150 (165)
T 2z6w_A           72 GTGGKSIYGSRFPDENFTLKHVGPGVLSMANAGPNTNGSQFFICTIKTDWLDGKHVVFGHVIEGMDVVKKIESFGS-KSG  150 (165)
T ss_dssp             SSCCCBTTBSCBCCCCCCSCCCSTTEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHHTCC-TTS
T ss_pred             CCCCCcccCCcccCcccccccCCCCEEEEeeCCCCCcccEEEEEcCCCcccCCCeeEEEEEEcCHHHHHHHHhCCC-CCC
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999999986 458


Q ss_pred             CcccceEEeeeeee
Q 021445          160 CPIADVTITDCGEI  173 (312)
Q Consensus       160 ~P~~~i~I~~~g~l  173 (312)
                      +|..+|+|.+||++
T Consensus       151 ~P~~~v~I~~~g~l  164 (165)
T 2z6w_A          151 RTSKKIVITDCGQL  164 (165)
T ss_dssp             CCSSCEEEEEEEEC
T ss_pred             CCCCcEEEEEeEEE
Confidence            99999999999997

>2cmt_A Peptidyl-prolyl CIS-trans isomerase E; rotamase activity, rotamase, RNA-binding, cyclosporin, cyclophilin, beta-barrel; 1.50A {Schistosoma mansoni} PDB: 2ck1_A

Probab=100.00  E-value=2.4e-51  Score=337.35  Aligned_cols=163  Identities=60%  Similarity=1.000  Sum_probs=154.8

Q ss_pred             CCCCeEEEEEEECCeeeeEEEEEEeCCCCchhHHhHHHHhhCCCCCCCCCCCCce-ecCCEEEEeecCCeEEeCCCCCCC
Q 021445            1 MARPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLH-YKGVRFHRVIKGFMIQGGDISAGD   79 (312)
Q Consensus         1 ~~~~~v~~d~~~~~~~~G~i~ieL~~~~aP~~~~nF~~l~~~~~~~~~~~~~~~~-Y~g~~~~rv~~~~~iq~G~~~~~~   79 (312)
                      |.+|+||||+++++++.|+|+||||++.||++|+||++||++.++         | |+|+.||||+|+|+|||||+..++
T Consensus         8 ~~~~~v~~di~i~~t~~G~i~ieL~~~~aP~t~~NF~~L~~~~~g---------~~Y~g~~FhRvi~~f~iQgGd~~~~~   78 (172)
T 2cmt_A            8 RNLPRVFFDIRIGNGDAGRIVMELRSDIVPRTAENFRALCTGERG---------FGYHNCCFHRVIPQFMCQGGDFVKGD   78 (172)
T ss_dssp             -CCCEEEEEEEETTEEEEEEEEEECTTTCHHHHHHHHHHHHTTTS---------CSSTTCBEEEEETTTEEEECCTTTSS
T ss_pred             CCCCEEEEEEEECCeecceEEEEEcCCCCCHHHHHHHHHhccCCC---------ceECCCEEEEEECCCEEEcCCccCCC
Confidence            569999999999999999999999999999999999999997432         6 999999999999999999998788


Q ss_pred             CCCCCcccCCCCCCCcccccCCCcceEEeecCCCCCCCceEEEecCCCCCCCCCCceEEEEEeChHHHHHHhcccCCCCC
Q 021445           80 GTGGESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFFITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDND  159 (312)
Q Consensus        80 ~~~~~~~~~~~~~~e~~~~~~~~~G~l~~~~~~~~~~~sqF~I~~~~~~~ld~~~~vfG~V~~G~~vl~~i~~~~~~~~~  159 (312)
                      |+++.++||.+|++|++.++|.++|+||||+.+|++++|||||++.+.++||++|+|||+|++||+||++|+.++++. +
T Consensus        79 G~gg~si~g~~f~dE~~~l~h~~~G~lsmA~~gp~t~gSQFfIt~~~~~~LDg~~tvFG~Vv~G~dvv~~I~~~~~~~-~  157 (172)
T 2cmt_A           79 GTGGKSIYGRKFDDENFQLRHEGFGVLSMANSGPNTNGSQFFICTTKCDWLDGKHVVFGRVVDGQNVVKKMESVGSKS-G  157 (172)
T ss_dssp             SSCCCBTTBSCBCCCCCCSCCCSTTEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHGGGGCCTT-C
T ss_pred             CCCCCccCCCcccccccCcccCCceEEEEeeCCCCCcccEEEEECCCCCccCCCeeEEEEEEcCHHHHHHHHhCCCCC-C
Confidence            999999999999999999999999999999999999999999999999999999999999999999999999998864 8


Q ss_pred             CcccceEEeeeeee
Q 021445          160 CPIADVTITDCGEI  173 (312)
Q Consensus       160 ~P~~~i~I~~~g~l  173 (312)
                      +|..+|+|.+||++
T Consensus       158 ~P~~~v~I~~~g~l  171 (172)
T 2cmt_A          158 KVKEPVIISRCGEL  171 (172)
T ss_dssp             CCSSCEEEEEEEEE
T ss_pred             CCCCCEEEEEeEeE
Confidence            99999999999998

>2poy_A Peptidyl-prolyl CIS-trans isomerase; isomerase-immunosuppressant complex, immunosuppressant, cyclophilin, isomerase, S genomics, structural genomics consortium; HET: BMT; 1.80A {Cryptosporidium parvum iowa II} PDB: 2plu_A*

Probab=100.00  E-value=1.6e-51  Score=341.98  Aligned_cols=169  Identities=61%  Similarity=0.986  Sum_probs=158.1

Q ss_pred             CCCeEEEEEEECCeeeeEEEEEEeCCCCchhHHhHHHHhhCCCCCCCCCCCCceecCCEEEEeecCCeEEeCCCCCCCCC
Q 021445            2 ARPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRVIKGFMIQGGDISAGDGT   81 (312)
Q Consensus         2 ~~~~v~~d~~~~~~~~G~i~ieL~~~~aP~~~~nF~~l~~~~~~~~~~~~~~~~Y~g~~~~rv~~~~~iq~G~~~~~~~~   81 (312)
                      .+|+|||||++++++.|+|+||||++.||+||+||++||++.++.+. .+++++|+|+.||||+|+|||||||+..++|+
T Consensus        18 ~~~~v~~di~i~~t~~G~I~ieL~~~~aP~t~~NF~~L~~g~~g~~~-~~~~~~Y~g~~FhRVi~~f~iQgGd~~~~~G~   96 (186)
T 2poy_A           18 GNPVVYFDISIGQTPAGRITMELFADKVPITAENFRALCTGEKGMGQ-SGKPLCYTGSFFHRIIPQFMIQGGDFTRGDGT   96 (186)
T ss_dssp             CCCEEEEEEEETTEEEEEEEEEECTTTCHHHHHHHHHHHHTTTCBCT-TSSBSCCTTCBCCEEETTTEEEECCTTTSSSS
T ss_pred             CCCEEEEEEeECCEecccEEEEEeCCCCcHHHHHHHHHhcccCCccc-cCccceECCCEEEEEeCCCEEEeCCCCCCCCC
Confidence            58999999999999999999999999999999999999997655543 46777899999999999999999999878899


Q ss_pred             CCCcccCCCCCCCcccccCCCcceEEeecCCCCCCCceEEEecCCCCCCCCCCceEEEEEeChHHHHHHhcccCCCCCCc
Q 021445           82 GGESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFFITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCP  161 (312)
Q Consensus        82 ~~~~~~~~~~~~e~~~~~~~~~G~l~~~~~~~~~~~sqF~I~~~~~~~ld~~~~vfG~V~~G~~vl~~i~~~~~~~~~~P  161 (312)
                      ++.++||.+|++|++.++|.++|+||||+.+|++++|||||++.+.++||++|+|||+|++||+||++|+.+++. +++|
T Consensus        97 gg~si~g~~f~dE~~~l~h~~~G~lsMAn~gpntngSQFFIt~~~~~~LDg~~tVFG~Vv~Gmdvv~~I~~~~t~-~~~P  175 (186)
T 2poy_A           97 GGESIYGSKFRDENFVYTHDAPFLLSMANAGPNTNGSQFFITTVPCPWLDGKHVVFGKVLEGMEVVKSIEKCGSQ-NGKP  175 (186)
T ss_dssp             CCCCTTC-CBCCCCCCSCCCSTTEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHHTCCT-TSCC
T ss_pred             CCCccCCCcccCcccccccCCCcEEEEeeCCCCCcccEEEEECCCCcccCCCeeEEEEEecCHHHHHHHHhCCCC-CCCC
Confidence            999999999999999999999999999999999999999999999999999999999999999999999999984 4899


Q ss_pred             ccceEEeeeee
Q 021445          162 IADVTITDCGE  172 (312)
Q Consensus       162 ~~~i~I~~~g~  172 (312)
                      ..+|+|.+||+
T Consensus       176 ~~~v~I~~cG~  186 (186)
T 2poy_A          176 TKSVCITASGV  186 (186)
T ss_dssp             SSCEEEEEEEC
T ss_pred             CCCEEEEeCCC
Confidence            99999999985

>3pmp_A Cyclophilin A; peptidyl prolyl isomerase, isomerase-immunosuppressant compl; HET: BMT; 1.47A {Moniliophthora perniciosa} SCOP: b.62.1.1 PDB: 3o7t_A

Probab=100.00  E-value=2.8e-51  Score=335.54  Aligned_cols=162  Identities=57%  Similarity=0.952  Sum_probs=155.4

Q ss_pred             CCCeEEEEEEECCeeeeEEEEEEeCCCCchhHHhHHHHhhCCCCCCCCCCCCce-ecCCEEEEeecCCeEEeCCCCCCCC
Q 021445            2 ARPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLH-YKGVRFHRVIKGFMIQGGDISAGDG   80 (312)
Q Consensus         2 ~~~~v~~d~~~~~~~~G~i~ieL~~~~aP~~~~nF~~l~~~~~~~~~~~~~~~~-Y~g~~~~rv~~~~~iq~G~~~~~~~   80 (312)
                      +||+|||||++++++.|+|+||||++.||+||+||++||++.++         | |+|+.||||+|+|+|||||+..+++
T Consensus         1 ~~p~vf~di~i~~t~~G~i~ieL~~~~aP~t~~nF~~L~~g~~g---------~~Y~g~~fhRvi~~f~iQgGd~~~~~g   71 (164)
T 3pmp_A            1 AMANVFFNISINDKPEGRIVFKLYDEAVPKTAKNFRELATGQHG---------FGYKDSIFHRVIPQFMLQGGDFTRHNG   71 (164)
T ss_dssp             CCCCEEEEEEETTEEEEEEEEEECTTTCHHHHHHHHHHHHTTTS---------CSSTTCBEEEEETTTEEEECCTTTSSS
T ss_pred             CCCEEEEEEEECCEEeeEEEEEEeCCCCcHHHHHHHHHhcccCC---------CcccCCEEEEEECCCeEEeCCCCCCCC
Confidence            68999999999999999999999999999999999999996543         6 9999999999999999999877889


Q ss_pred             CCCCcccCCCCCCCcccccCCCcceEEeecCCCCCCCceEEEecCCCCCCCCCCceEEEEEeChHHHHHHhcccCCCCCC
Q 021445           81 TGGESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFFITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDC  160 (312)
Q Consensus        81 ~~~~~~~~~~~~~e~~~~~~~~~G~l~~~~~~~~~~~sqF~I~~~~~~~ld~~~~vfG~V~~G~~vl~~i~~~~~~~~~~  160 (312)
                      .++.++|+.+|++|+..++|.++|+|||++.+|++++|||||++++.++||++|+|||+|++||+||++|+.++++ +++
T Consensus        72 ~gg~si~g~~~~dE~~~l~h~~~G~lsma~~g~~t~~SQFfIt~~~~~~Ld~~~~vFG~Vv~G~~vv~~I~~~~~~-~~~  150 (164)
T 3pmp_A           72 TGGKSIYGEKFADENFQVKHTKPGLLSMANAGANTNGSQFFITTVPTSWLDGKHVVFGEVIEGLDIVRKVEGKGSA-SGK  150 (164)
T ss_dssp             SCCCBTTBSCBCCCCCCSCCCSTTEEEECBSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTTCCT-TCC
T ss_pred             CCCcccCCccccccccccCcCCCcEEEEeeCCCCCcccEEEEECCCChhhCCCccEEEEEeCCHHHHHHHHhCCCC-CCC
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999999987 489


Q ss_pred             cccceEEeeeeee
Q 021445          161 PIADVTITDCGEI  173 (312)
Q Consensus       161 P~~~i~I~~~g~l  173 (312)
                      |..+|+|.+||+|
T Consensus       151 P~~~v~I~~cg~l  163 (164)
T 3pmp_A          151 TNATIKITDCGTV  163 (164)
T ss_dssp             CSSCEEEEEEEEC
T ss_pred             cccCEEEEeCeEE
Confidence            9999999999997

>1mzw_A Cyclophilin H, U-snRNP-ASSOCIATED cyclophilin; cyclophilin, peptidyl-prolyl-CIS/trans isomerase, spliceosome, U4/U6-60K protein, WD protein; 2.00A {Homo sapiens} SCOP: b.62.1.1 PDB: 1qoi_A

Probab=100.00  E-value=1.7e-51  Score=340.17  Aligned_cols=169  Identities=58%  Similarity=0.988  Sum_probs=159.2

Q ss_pred             CCCeEEEEEEECCeeeeEEEEEEeCCCCchhHHhHHHHhhCCCCCCCCCCCCceecCCEEEEeecCCeEEeCCCCCCCCC
Q 021445            2 ARPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRVIKGFMIQGGDISAGDGT   81 (312)
Q Consensus         2 ~~~~v~~d~~~~~~~~G~i~ieL~~~~aP~~~~nF~~l~~~~~~~~~~~~~~~~Y~g~~~~rv~~~~~iq~G~~~~~~~~   81 (312)
                      .||+||||+++++++.|+|+||||++.||+||+||++||+++.+.   .+++++|+|+.||||+|+|+|||||+..++|+
T Consensus         9 ~~~~v~~di~i~~t~~G~i~ieL~~~~aP~t~~NF~~L~~~~~g~---~g~~~~Y~g~~FhRvi~~f~iQgGd~~~~~G~   85 (177)
T 1mzw_A            9 VNPVVFFDVSIGGQEVGRMKIELFADVVPKTAENFRQFCTGEFRK---DGVPIGYKGSTFHRVIKDFMIQGGDFVNGDGT   85 (177)
T ss_dssp             CCCEEEEEEEETTEEEEEEEEEECTTTCHHHHHHHHHHHHTCCEE---TTEECSSTTCBCCEEETTTEEEECCTTTSSSC
T ss_pred             CCCEEEEEEEECCeeceeEEEEEcCCCCcHHHHHHHHHHhcccCC---cCccceECCCEEEEEECCCEEEcCCcccCCCC
Confidence            489999999999999999999999999999999999999987432   24445699999999999999999999878899


Q ss_pred             CCCcccCCCCCCCcccccCCCcceEEeecCCCCCCCceEEEecCCCCCCCCCCceEEEEEeChHHHHHHhcccCCCCCCc
Q 021445           82 GGESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFFITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCP  161 (312)
Q Consensus        82 ~~~~~~~~~~~~e~~~~~~~~~G~l~~~~~~~~~~~sqF~I~~~~~~~ld~~~~vfG~V~~G~~vl~~i~~~~~~~~~~P  161 (312)
                      +++++||..|++|++.++|+++|+||||+.+|++++|||||++++.++||++|+|||+|++||+||++|+.++++.+++|
T Consensus        86 gg~si~g~~f~dE~~~l~h~~~G~lsmAn~gp~tngSQFfIt~~~~~~LDg~~~VFG~Vv~G~dvv~~I~~~~t~~~~~P  165 (177)
T 1mzw_A           86 GVASIYRGPFADENFKLRHSAPGLLSMANSGPSTNGCQFFITCSKCDWLDGKHVVFGKIIDGLLVMRKIENVPTGPNNKP  165 (177)
T ss_dssp             CCCCTTSSCBCCCCCCSCCCSTTEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTSCBCGGGCB
T ss_pred             CCCccCCCcccCcccccccCCCCEEEEccCCCCCcceEEEEECCCCCccCCCeeEEEEEeCCHHHHHHHHhCCcCCCCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999888999


Q ss_pred             ccceEEeeeeee
Q 021445          162 IADVTITDCGEI  173 (312)
Q Consensus       162 ~~~i~I~~~g~l  173 (312)
                      ..+|+|.+||+|
T Consensus       166 ~~~v~I~~cG~l  177 (177)
T 1mzw_A          166 KLPVVISQCGEM  177 (177)
T ss_dssp             SSCEEEEEEEEC
T ss_pred             CCCEEEEeceeC
Confidence            999999999986

>2haq_A Cyclophilin; rotamase, proline, isomerase, CIS-trans, protozoa, KAla-AZAR.; 1.97A {Leishmania donovani} PDB: 3eov_A* 3bt8_A

Probab=100.00  E-value=1.7e-51  Score=337.55  Aligned_cols=163  Identities=56%  Similarity=0.907  Sum_probs=155.5

Q ss_pred             CCCCeEEEEEEECCeeeeEEEEEEeCCCCchhHHhHHHHhhCCCCCCCCCCCCce-ecCCEEEEeecCCeEEeCCCCCCC
Q 021445            1 MARPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLH-YKGVRFHRVIKGFMIQGGDISAGD   79 (312)
Q Consensus         1 ~~~~~v~~d~~~~~~~~G~i~ieL~~~~aP~~~~nF~~l~~~~~~~~~~~~~~~~-Y~g~~~~rv~~~~~iq~G~~~~~~   79 (312)
                      |.+|+||||+++++++.|+|+||||++.||+||+||++||++.++         | |+|+.||||+|+|+|||||+..++
T Consensus         9 ~~~~~v~~di~i~~t~~G~i~ieL~~~~aP~t~~NF~~L~~g~~g---------~~Y~g~~FhRvi~~f~iQgGd~~~~~   79 (172)
T 2haq_A            9 EVTAKVYFDVMIDSEPLGRITIGLFGKDAPLTTENFRQLCTGEHG---------FGYKDSIFHRVIQNFMIQGGDFTNFD   79 (172)
T ss_dssp             CCCEEEEEEEEETTEEEEEEEEEECTTTCHHHHHHHHHHHHTTTS---------CCSTTCBCCEEETTTEEEECCTTTSS
T ss_pred             CCCCeEEEEEEECCEecceEEEEEeCCCCcHHHHHHHHHhccCCC---------cccCCCEEEEEECCCEEecCCccCCC
Confidence            568999999999999999999999999999999999999976533         6 999999999999999999987788


Q ss_pred             CCCCCcccCCCCCCCcccccCCCcceEEeecCCCCCCCceEEEecCCCCCCCCCCceEEEEEeChHHHHHHhcccCCCCC
Q 021445           80 GTGGESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFFITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDND  159 (312)
Q Consensus        80 ~~~~~~~~~~~~~~e~~~~~~~~~G~l~~~~~~~~~~~sqF~I~~~~~~~ld~~~~vfG~V~~G~~vl~~i~~~~~~~~~  159 (312)
                      |++++++||.+|++|+..++|. +|+||||+.+|++++|||||++++.++||++|+|||+|++||+||++|+.++++.++
T Consensus        80 g~gg~si~g~~f~dE~~~l~h~-~G~lsmAn~gp~tngSQFfIt~~~~~~LDg~~~vFG~Vv~G~dvv~~I~~~~t~~~~  158 (172)
T 2haq_A           80 GTGGKSIYGEKFADENLNVKHF-VGALSMANAGPNTNGSQFFITTAPTPWLDGRHVVFGKVLDGMDVVLRIEKTKTNSHD  158 (172)
T ss_dssp             SSCCCCSSSSCBCCCCCCSCCC-TTEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTSCBCGGG
T ss_pred             CCCCccccCCcccCcCCCcccC-ceEEEEccCCCCCcccEEEEECCCCCccCCCEeEEEEEeCCHHHHHHHHhCCcCCCC
Confidence            9999999999999999899998 999999999999999999999999999999999999999999999999999999888


Q ss_pred             CcccceEEeeeeee
Q 021445          160 CPIADVTITDCGEI  173 (312)
Q Consensus       160 ~P~~~i~I~~~g~l  173 (312)
                      +|..+|+|.+||+|
T Consensus       159 ~P~~~v~I~~~g~l  172 (172)
T 2haq_A          159 RPVKPVKIVASGEL  172 (172)
T ss_dssp             CBSSCEEEEEEEEC
T ss_pred             cCCCCeEEEEeEEC
Confidence            99999999999985

>2r99_A Peptidyl-prolyl CIS-trans isomerase E; CIS-trans isomerization, structural genomics consortium, SGC, alternative splicing, mRNA processing; 1.61A {Homo sapiens} SCOP: b.62.1.1 PDB: 3uch_A 1zmf_A

Probab=100.00  E-value=5.7e-51  Score=335.74  Aligned_cols=163  Identities=57%  Similarity=0.962  Sum_probs=154.7

Q ss_pred             CCCCeEEEEEEECCeeeeEEEEEEeCCCCchhHHhHHHHhhCCCCCCCCCCCCce-ecCCEEEEeecCCeEEeCCCCCCC
Q 021445            1 MARPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLH-YKGVRFHRVIKGFMIQGGDISAGD   79 (312)
Q Consensus         1 ~~~~~v~~d~~~~~~~~G~i~ieL~~~~aP~~~~nF~~l~~~~~~~~~~~~~~~~-Y~g~~~~rv~~~~~iq~G~~~~~~   79 (312)
                      |.||+||||+++++++.|+|+||||.+.||++|+||++||++.++         | |+|+.||||+|+|+|||||+..++
T Consensus         9 ~~~~~v~~di~i~~t~~G~i~ieL~~~~aP~t~~NF~~L~~g~~g---------~~Y~g~~FhRvi~~f~iQgGd~~~~~   79 (173)
T 2r99_A            9 RSNPQVYMDIKIGNKPAGRIQMLLRSDVVPMTAENFRCLCTHEKG---------FGFKGSSFHRIIPQFMCQGGDFTNHN   79 (173)
T ss_dssp             -CCCEEEEEEEETTEEEEEEEEEECTTTCHHHHHHHHHHHHTTTS---------CCSTTCBEEEEETTTEEEECCTTTSS
T ss_pred             cCCCEEEEEEEECCccceeEEEEECCCCCcHHHHHHHHHhcccCC---------ceecCCEEEEeeCCCEEEeCCcCCCC
Confidence            569999999999999999999999999999999999999986533         5 999999999999999999998888


Q ss_pred             CCCCCcccCCCCCCCcccccCCCcceEEeecCCCCCCCceEEEecCCCCCCCCCCceEEEEEeChHHHHHHhcccCCCCC
Q 021445           80 GTGGESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFFITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDND  159 (312)
Q Consensus        80 ~~~~~~~~~~~~~~e~~~~~~~~~G~l~~~~~~~~~~~sqF~I~~~~~~~ld~~~~vfG~V~~G~~vl~~i~~~~~~~~~  159 (312)
                      |+++.++||..|++|++.++|+++|+|||++.+|++++|||||++.+.++||++|+|||+|++||+||++|+.++++. +
T Consensus        80 g~gg~si~g~~f~dE~~~l~h~~~G~lsmA~~gp~t~gSQFfIt~~~~~~LDg~~tVFG~Vv~G~dvv~~I~~~~~~~-~  158 (173)
T 2r99_A           80 GTGGKSIYGKKFDDENFILKHTGPGLLSMANSGPNTNGSQFFLTCDKTDWLDGKHVVFGEVTEGLDVLRQIEAQGSKD-G  158 (173)
T ss_dssp             SSCCCBTTBSCBCCCCCCSCCCSSSEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTTCCTT-C
T ss_pred             CCCCCccCCCcccCcccCcccCCCcEEEEccCCCCCcccEEEEECCCCCccCCCeeEEEEEEcCHHHHHHHHhCCCCC-C
Confidence            999999999999999999999999999999999999999999999999999999999999999999999999998865 8


Q ss_pred             CcccceEEeeeeee
Q 021445          160 CPIADVTITDCGEI  173 (312)
Q Consensus       160 ~P~~~i~I~~~g~l  173 (312)
                      +|..+|+|.+||++
T Consensus       159 ~P~~~v~I~~cG~l  172 (173)
T 2r99_A          159 KPKQKVIIADCGEY  172 (173)
T ss_dssp             CCSSCEEEEEEEEC
T ss_pred             CCCCCeEEEEeeeE
Confidence            99999999999997

>1qng_A Peptidyl-prolyl CIS-trans isomerase; isomerase-immunosuppressant complex, cyclophilin-cyclosporin complex, immunosuppressant, cyclophilin; HET: BMT; 2.1A {Plasmodium falciparum} SCOP: b.62.1.1 PDB: 1qnh_A*

Probab=100.00  E-value=3e-51  Score=336.79  Aligned_cols=169  Identities=59%  Similarity=1.000  Sum_probs=157.2

Q ss_pred             CCCeEEEEEEECCeeeeEEEEEEeCCCCchhHHhHHHHhhCCCCCCCCCCCCceecCCEEEEeecCCeEEeCCCCCCCCC
Q 021445            2 ARPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRVIKGFMIQGGDISAGDGT   81 (312)
Q Consensus         2 ~~~~v~~d~~~~~~~~G~i~ieL~~~~aP~~~~nF~~l~~~~~~~~~~~~~~~~Y~g~~~~rv~~~~~iq~G~~~~~~~~   81 (312)
                      .||+|||||++++++.|+|+||||++.||+||+||++||++. +.+ ..+++++|+|+.||||+|+|||||||+..++|+
T Consensus         2 ~~~~v~~di~i~~~~~G~i~ieL~~~~aP~t~~NF~~L~~~~-g~g-~~~~~~~Y~g~~FhRvi~~f~iQgGd~~~~~g~   79 (170)
T 1qng_A            2 KRSKVFFDISIDNSNAGRIIFELFSDITPRTCENFRALCTGE-KIG-SRGKNLHYKNSIFHRIIPQFMCQGGDITNGNGS   79 (170)
T ss_dssp             CSCEEEEEEEESSSEEEEEEEEECTTTCHHHHHHHHHHHHTC-EEC-TTSSEECCTTCBCCEEETTTEEEECCTTTSSSS
T ss_pred             CCCEEEEEEeECCEeceeEEEEEcCCCCCHHHHHHHHHhccC-CcC-ccCccceECCCEEEEEECCCEEEcCCccCCCCC
Confidence            489999999999999999999999999999999999999863 222 235555699999999999999999999878899


Q ss_pred             CCCcccCCCCCCCcccccCCCcceEEeecCCCCCCCceEEEecCCCCCCCCCCceEEEEEeChHHHHHHhcccCCCCCCc
Q 021445           82 GGESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFFITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCP  161 (312)
Q Consensus        82 ~~~~~~~~~~~~e~~~~~~~~~G~l~~~~~~~~~~~sqF~I~~~~~~~ld~~~~vfG~V~~G~~vl~~i~~~~~~~~~~P  161 (312)
                      ++.++||..|++|++.++|+++|+||||+.+|++++|||||++.+.++||++|+|||+|++||+||++|+.+++ .+++|
T Consensus        80 gg~si~g~~f~dE~~~l~h~~~G~lsmAn~gp~tngSQFfIt~~~~~~Ldg~~~vFG~Vv~G~dvv~~I~~~~t-~~~~P  158 (170)
T 1qng_A           80 GGESIYGRSFTDENFNMKHDQPGLLSMANAGPNTNSSQFFITLVPCPWLDGKHVVFGKVIEGMNVVREMEKEGA-KSGYV  158 (170)
T ss_dssp             CCCBTTBSCBCCCCCCSCCCSTTEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTTCC-TTCCC
T ss_pred             CCccccCCcccccccccccCCCCEEEEeecCCCCcccEEEEECCCCcccCCCeeEEEEEECCHHHHHHHHhCCC-CCCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999 55899


Q ss_pred             ccceEEeeeeee
Q 021445          162 IADVTITDCGEI  173 (312)
Q Consensus       162 ~~~i~I~~~g~l  173 (312)
                      ..+|+|.+||++
T Consensus       159 ~~~v~I~~cG~l  170 (170)
T 1qng_A          159 KRSVVITDCGEL  170 (170)
T ss_dssp             SSCEEEEEEEEC
T ss_pred             CCCeEEEeceeC
Confidence            999999999986

>3ich_A Peptidyl-prolyl CIS-trans isomerase B; beta sandwich, cyclosporin, endoplasmic reticulum, glycoprot isomerase, rotamase; 1.20A {Homo sapiens} PDB: 3ici_A* 1cyn_A* 2esl_A* 2rmc_A* 1h0p_A 1xo7_A 1xq7_A*

Probab=100.00  E-value=2.2e-51  Score=342.03  Aligned_cols=169  Identities=57%  Similarity=0.950  Sum_probs=159.6

Q ss_pred             CCeEEEEEEECCeeeeEEEEEEeCCCCchhHHhHHHHhhCCCCCCCCCCCCce-ecCCEEEEeecCCeEEeCCCCCCCCC
Q 021445            3 RPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLH-YKGVRFHRVIKGFMIQGGDISAGDGT   81 (312)
Q Consensus         3 ~~~v~~d~~~~~~~~G~i~ieL~~~~aP~~~~nF~~l~~~~~~~~~~~~~~~~-Y~g~~~~rv~~~~~iq~G~~~~~~~~   81 (312)
                      +|+|||||++++++.|+|+|+||.+.||+||+||++||++.++         | |+|+.||||+|+|||||||+..++|+
T Consensus        15 ~~~v~~di~i~~t~~G~i~ieL~~~~aP~t~~NF~~L~~g~~g---------~~Y~g~~FhRvi~~f~iQgGd~~~~~g~   85 (188)
T 3ich_A           15 TVKVYFDLRIGDEDVGRVIFGLFGKTVPKTVDNFVALATGEKG---------FGYKNSKFHRVIKDFMIQGGDFTRGDGT   85 (188)
T ss_dssp             EEEEEEEEEETTEEEEEEEEEECTTTCHHHHHHHHHHHHTTTS---------CSSTTCBCCEEETTTEEEECCTTTSSSS
T ss_pred             CCeEEEEEEECCEeceeEEEEEcCCCCcHHHHHHHHHhcccCC---------ccccCCEEEEEECCCEEEcCCccCCCCC
Confidence            6899999999999999999999999999999999999986533         6 99999999999999999998778899


Q ss_pred             CCCcccCCCCCCCcccccCCCcceEEeecCCCCCCCceEEEecCCCCCCCCCCceEEEEEeChHHHHHHhcccCCCCCCc
Q 021445           82 GGESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFFITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCP  161 (312)
Q Consensus        82 ~~~~~~~~~~~~e~~~~~~~~~G~l~~~~~~~~~~~sqF~I~~~~~~~ld~~~~vfG~V~~G~~vl~~i~~~~~~~~~~P  161 (312)
                      |+.++||..|++|+..++|+++|+|||++.+|++++|||||++++.++||++|+|||+|++||+||++|+.++++.+++|
T Consensus        86 gg~si~g~~f~dE~~~l~h~~~G~lsmAn~gp~tngSQFfIt~~~~~~LDg~~tVFG~Vv~G~dvv~~I~~~~~~~~~~P  165 (188)
T 3ich_A           86 GGKSIYGERFPDENFKLKHYGPGWVSMANAGKDTNGSQFFITTVKTAWLDGKHVVFGKVLEGMEVVRKVESTKTDSRDKP  165 (188)
T ss_dssp             CCCBTTBSCBCCCCCCSCCCSTTEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTSCBCTTSCB
T ss_pred             CCccccCCcccccccCcccCCCeEEEEccCCCCCcccEEEEECCCCcccCCCeeEEEEEeCCHHHHHHHHhCCcCCCCeE
Confidence            99999999999999899999999999999999999999999999999999999999999999999999999999988899


Q ss_pred             ccceEEeeeeee--CCCCCCC
Q 021445          162 IADVTITDCGEI--PEGADDG  180 (312)
Q Consensus       162 ~~~i~I~~~g~l--~~~~~~~  180 (312)
                      ..+|+|.+|+++  .+||+++
T Consensus       166 ~~~v~I~~~~~l~~~~Pf~~~  186 (188)
T 3ich_A          166 LKDVIIADCGKIEVEKPFAIA  186 (188)
T ss_dssp             SSCEEEEEEEEEEEEEEEECC
T ss_pred             CCCEEEEEeEEEecCCCCCCC
Confidence            999999999998  5566654

>3rdd_A Peptidyl-prolyl CIS-trans isomerase A; beta barrel, cytosolic, inhibito isomerase-isomerase inhibitor complex; HET: EA4; 2.14A {Homo sapiens}

Probab=100.00  E-value=1.7e-50  Score=335.90  Aligned_cols=164  Identities=59%  Similarity=0.982  Sum_probs=155.7

Q ss_pred             CCCCeEEEEEEECCeeeeEEEEEEeCCCCchhHHhHHHHhhCCCCCCCCCCCCce-ecCCEEEEeecCCeEEeCCCCCCC
Q 021445            1 MARPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLH-YKGVRFHRVIKGFMIQGGDISAGD   79 (312)
Q Consensus         1 ~~~~~v~~d~~~~~~~~G~i~ieL~~~~aP~~~~nF~~l~~~~~~~~~~~~~~~~-Y~g~~~~rv~~~~~iq~G~~~~~~   79 (312)
                      |.||+||||+++++++.|+|+|+||++.||++|+||++||+++.+         + |+|+.||||+|+|+|||||+..++
T Consensus        20 ~~~p~v~~di~i~~~~~G~I~ieL~~~~aP~t~~NF~~L~~~~~g---------~~Y~g~~FhRvi~~f~iQgGd~~~~~   90 (184)
T 3rdd_A           20 MVNPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKG---------FGYKGSCFHRIIPGFMCQGGDFTRHN   90 (184)
T ss_dssp             -CCCEEEEEEEETTEEEEEEEEEECTTTSHHHHHHHHHHHHTTTS---------CSSTTCBCCEEETTTEEEECCTTTSS
T ss_pred             CCCCEEEEEEeECCEeeeEEEEEEeCCCCcHHHHHHHHHhccCcC---------cccCCCEEEEccCCcEEEeCCCCCCC
Confidence            579999999999999999999999999999999999999998743         4 999999999999999999988888


Q ss_pred             CCCCCcccCCCCCCCcccccCCCcceEEeecCCCCCCCceEEEecCCCCCCCCCCceEEEEEeChHHHHHHhcccCCCCC
Q 021445           80 GTGGESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFFITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDND  159 (312)
Q Consensus        80 ~~~~~~~~~~~~~~e~~~~~~~~~G~l~~~~~~~~~~~sqF~I~~~~~~~ld~~~~vfG~V~~G~~vl~~i~~~~~~~~~  159 (312)
                      |.++.++++..|++|++.++|.++|+|||++.+|++++|||||++++.++||++|+|||+|++||+||++|+.++++ ++
T Consensus        91 g~gg~si~g~~~~de~~~l~h~~~G~lsmA~~gp~s~gSQFfIt~~~~~~LDg~~tVFG~Vv~G~dvv~~I~~~~~~-~g  169 (184)
T 3rdd_A           91 GTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFFICTAKTEWLDGKHVVFGKVKEGMNIVEAMERFGSR-NG  169 (184)
T ss_dssp             SSCCCBTTBSCBCCCCCCSCCCSTTEEEECCSSTTCBSSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTTCCT-TS
T ss_pred             CCCCcccCCCcccCcccccccCCCcEEEEEeCCCCCcccEEEEEeCCchhhCCCceEEEEEecCHHHHHHHHhcCCC-CC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999875 58


Q ss_pred             CcccceEEeeeeeeC
Q 021445          160 CPIADVTITDCGEIP  174 (312)
Q Consensus       160 ~P~~~i~I~~~g~l~  174 (312)
                      +|..+|+|.+||+|.
T Consensus       170 ~P~~~v~I~~cG~l~  184 (184)
T 3rdd_A          170 KTSKKITIADCGQLE  184 (184)
T ss_dssp             CCSSCEEEEEEEECC
T ss_pred             CCcCCeEEEeCeEEC
Confidence            999999999999983

>3k2c_A Peptidyl-prolyl CIS-trans isomerase; ssgcid, NIH, niaid, SBRI, UW, decode, cytoplasm, rotamase, structural genomics; HET: PG5; 1.95A {Encephalitozoon cuniculi}

Probab=100.00  E-value=4.9e-50  Score=335.22  Aligned_cols=164  Identities=52%  Similarity=0.886  Sum_probs=155.9

Q ss_pred             CCCCeEEEEEEECCeeeeEEEEEEeCCCCchhHHhHHHHhhCCCCCCCCCCCCce-ecCCEEEEeecCCeEEeCCCCCCC
Q 021445            1 MARPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLH-YKGVRFHRVIKGFMIQGGDISAGD   79 (312)
Q Consensus         1 ~~~~~v~~d~~~~~~~~G~i~ieL~~~~aP~~~~nF~~l~~~~~~~~~~~~~~~~-Y~g~~~~rv~~~~~iq~G~~~~~~   79 (312)
                      |+||+|||||++++++.|+|+||||++.||++|+||++||+++++         | |+|+.||||+|+|+|||||+..++
T Consensus        25 ~~~p~v~~di~i~~t~~G~I~ieL~~~~aP~tv~NF~~L~~g~~g---------~~Y~g~~FhRvi~~f~iQgGd~~~~~   95 (193)
T 3k2c_A           25 EASGNVYFDVYANEESLGRIVMKLEDDIVPKTAKNFRTLCERPKG---------EGYKGSTFHRIIPGFMVQGGDYTAHN   95 (193)
T ss_dssp             -CTTCEEEEEEETTEEEEEEEEEECTTTSHHHHHHHHHHHHSCTT---------SSSTTCBEEEEETTTEEEECCTTTSS
T ss_pred             cCCCEEEEEEeECCEEeeEEEEEEcCCCChHHHHHHHHHhccccC---------CcccCCEEEEEeCCCEEEeCCCCCCC
Confidence            569999999999999999999999999999999999999997643         5 999999999999999999988888


Q ss_pred             CCCCCcccCCCCCCCcccccCCCcceEEeecCCCCCCCceEEEecCCCCCCCCCCceEEEEEeChHHHHHHhcccCCCCC
Q 021445           80 GTGGESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFFITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDND  159 (312)
Q Consensus        80 ~~~~~~~~~~~~~~e~~~~~~~~~G~l~~~~~~~~~~~sqF~I~~~~~~~ld~~~~vfG~V~~G~~vl~~i~~~~~~~~~  159 (312)
                      +.++.++++..|++|++.++|+++|+|+|++.+|++++|||||++++.++||++|+|||+|++||+||++|+.++++. +
T Consensus        96 g~gg~si~g~~f~dE~~~l~h~~~G~lsmAn~gp~t~gSQFFIt~~~~~~LDg~~tVFG~Vv~Gmdvv~~I~~~~t~~-g  174 (193)
T 3k2c_A           96 GTGGRSIYGEKFPDENFELKHTKEGILSMANCGAHTNGSQFFITLGKTQWLDEKHVVFGEVVEGMDVVHKIAKYGSES-G  174 (193)
T ss_dssp             SSCCCCTTSSCBCCCCCCSCCCSTTEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTTCCTT-C
T ss_pred             CcCCcccCCCcccccccccccCCCcEEEEEeCCCCCCccEEEEECCCCcccCCCccEEEEEeCCHHHHHHHHhcCCCC-C
Confidence            999999999999999999999999999999999999999999999999999999999999999999999999999885 7


Q ss_pred             Ccc--cceEEeeeeeeC
Q 021445          160 CPI--ADVTITDCGEIP  174 (312)
Q Consensus       160 ~P~--~~i~I~~~g~l~  174 (312)
                      +|.  .+|+|.+||+|.
T Consensus       175 ~P~~~~~v~I~~cG~l~  191 (193)
T 3k2c_A          175 QVKKGYRIEIRDCGVLG  191 (193)
T ss_dssp             CCCTTCCEEEEEEEECC
T ss_pred             cCccCccEEEEEceEeC
Confidence            999  999999999985

>1z81_A Cyclophilin; structural genomics, structural genomics consortium, SGC, isomerase; 2.80A {Plasmodium yoelii yoelii} SCOP: b.62.1.1

Probab=100.00  E-value=2.6e-50  Score=343.34  Aligned_cols=169  Identities=49%  Similarity=0.929  Sum_probs=160.3

Q ss_pred             CCCeEEEEEEECCeeeeEEEEEEeCCCCchhHHhHHHHhhCCCCCCCCCCCCceecCCEEEEeecCCeEEeCCCCCCCCC
Q 021445            2 ARPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRVIKGFMIQGGDISAGDGT   81 (312)
Q Consensus         2 ~~~~v~~d~~~~~~~~G~i~ieL~~~~aP~~~~nF~~l~~~~~~~~~~~~~~~~Y~g~~~~rv~~~~~iq~G~~~~~~~~   81 (312)
                      .||+|||||++++++.|+|+||||.+.||+||+||++||+++++.+   ++++||+|+.||||+|+|+|||||+..++|+
T Consensus        58 ~~~~V~~disi~~t~~G~I~ieL~~d~aP~tv~NF~~L~~~~~g~~---g~~~~Y~gt~FHRVi~~FmiQgGD~~~g~G~  134 (229)
T 1z81_A           58 SNPVVFMDINLGNNFLGKFKFELFQNIVPKTSENFRQFCTGEYKVN---NLPVGYKNTIFHRVIKEFMIQGGDFINHNGS  134 (229)
T ss_dssp             TCCEEEEEEEETTEEEEEEEEEECTTTCHHHHHHHHHHHHTCCBSS---SSBCSSTTEECCEEETTTEEEECCTTTSSSC
T ss_pred             CCcEEEEEEeECCeecccEEEEEcCCCCCHHHHHHHHHhhCCCCCc---CCCceECCCEEEEEeCCCEEEcCCCcCCCCC
Confidence            3899999999999999999999999999999999999999875443   5666899999999999999999999878899


Q ss_pred             CCCcccCCCCCCCcccccCCCcceEEeecCCCCCCCceEEEecCCCCCCCCCCceEEEEE--eChHHHHHHhcccCCCC-
Q 021445           82 GGESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFFITTTRTSHLDGKHVVFGRVI--KGMGVVRSIEHVMTGDN-  158 (312)
Q Consensus        82 ~~~~~~~~~~~~e~~~~~~~~~G~l~~~~~~~~~~~sqF~I~~~~~~~ld~~~~vfG~V~--~G~~vl~~i~~~~~~~~-  158 (312)
                      ++.++||..|++|++.++|+++|+||||+.+|++++||||||+.+.++||++|+|||+|+  +||+||++|+.++++.+ 
T Consensus       135 Gg~siyg~~f~dE~~~l~h~~~G~LsMAn~gpntngSQFFIt~~~~~~LDg~~tVFG~Vv~~eGmdVv~~I~~~~t~~~~  214 (229)
T 1z81_A          135 GSLSIYGEKFDDENFDIKHDKEGLLSMANSGPNTNGCQFFITTKKCEWLDGKNVVFGRIIDNDSLLLLKKIENVSVTPYI  214 (229)
T ss_dssp             CCCBTTBSCCCCCCCCSCCCSTTEEEECCSSSSCCCSCEEEESSCCGGGBTTBCEEEEECSHHHHHHHHHHHHSCBCTTT
T ss_pred             CCCccCCCcccccccccccCCCcEEEeccCCCCCcccEEEEECCCCcccCCCeeEEEEEEecCcHHHHHHHHhCCCCCCC
Confidence            999999999999999999999999999999999999999999999999999999999999  99999999999999887 


Q ss_pred             CCcccceEEeeeeee
Q 021445          159 DCPIADVTITDCGEI  173 (312)
Q Consensus       159 ~~P~~~i~I~~~g~l  173 (312)
                      ++|..+|+|.+||++
T Consensus       215 ~~P~~~V~I~~cG~l  229 (229)
T 1z81_A          215 YKPKIPINVVECGEL  229 (229)
T ss_dssp             CCBSSCEEEEEEEEC
T ss_pred             CCCCCCeEEEeCeeC
Confidence            899999999999986

>4fru_A Cyclophilin B, peptidyl-prolyl CIS-trans isomerase; cyclophilin-type ppiase, peptidyl-prolyl CIS-trans isomerase chaperone, foldase; HET: ME2 PEG; 1.10A {Equus caballus} PDB: 4frv_A* 3ich_A 3ici_A* 1cyn_A* 2esl_A* 2rmc_A* 1h0p_A 1xo7_A 1xq7_A*

Probab=100.00  E-value=5.1e-50  Score=334.15  Aligned_cols=164  Identities=59%  Similarity=0.998  Sum_probs=157.2

Q ss_pred             CCeEEEEEEECCeeeeEEEEEEeCCCCchhHHhHHHHhhCCCCCCCCCCCCceecCCEEEEeecCCeEEeCCCCCCCCCC
Q 021445            3 RPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRVIKGFMIQGGDISAGDGTG   82 (312)
Q Consensus         3 ~~~v~~d~~~~~~~~G~i~ieL~~~~aP~~~~nF~~l~~~~~~~~~~~~~~~~Y~g~~~~rv~~~~~iq~G~~~~~~~~~   82 (312)
                      +|+|||||++++++.|+|+||||++.||+||+||++||++.++.        +|+|+.||||+|+|+|||||+..++|.+
T Consensus        12 ~~~v~~di~i~~~~~G~i~ieL~~~~aP~t~~NF~~L~~~~~g~--------~Y~g~~FhRvi~~f~iQgGd~~~~~g~g   83 (185)
T 4fru_A           12 TVKVYFDLRIGDEDIGRVVIGLFGKTVPKTVDNFVALATGEKGF--------GYKDSKFHRVIKDFMIQGGDFTRGDGTG   83 (185)
T ss_dssp             EEEEEEEEEETTEEEEEEEEEECTTTSHHHHHHHHHHHHTTTSC--------CSTTCBCCEEETTTEEEECCTTTSSSSC
T ss_pred             CcEEEEEEEECCEecceEEEEEeCCCCcHHHHHHHHHHhcCCCC--------eEcCCEEEEeeCCCeEEECCCCCCCCCC
Confidence            68999999999999999999999999999999999999985332        5999999999999999999998888999


Q ss_pred             CCcccCCCCCCCcccccCCCcceEEeecCCCCCCCceEEEecCCCCCCCCCCceEEEEEeChHHHHHHhcccCCCCCCcc
Q 021445           83 GESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFFITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPI  162 (312)
Q Consensus        83 ~~~~~~~~~~~e~~~~~~~~~G~l~~~~~~~~~~~sqF~I~~~~~~~ld~~~~vfG~V~~G~~vl~~i~~~~~~~~~~P~  162 (312)
                      +.++++..|++|+..++|+++|+|||++.+|++++|||||++++.++||++|+|||+|++||+||++|+.++++.+++|.
T Consensus        84 g~si~g~~f~de~~~~~h~~~G~lsma~~gp~t~~SQFfI~~~~~~~Ld~~~~vFG~Vv~G~dvv~~I~~~~t~~~~~P~  163 (185)
T 4fru_A           84 GKSIYGERFPDENFKLKHYGPGWVSMANAGKDTNGSQFFITTVKTAWLDGKHVVFGKVLEGMEVVRKVETTKTDGRDKPL  163 (185)
T ss_dssp             CCBTTBSCBCCCCCCSCCCSTTEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTSCBCTTSCBS
T ss_pred             CccccCCccCccccccCcCCCeEEEEeeCCCCCcceEEEEEeCCCcccCCCccEEEEEeCCHHHHHHHHhCCCCCCCcCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999889999


Q ss_pred             cceEEeeeeeeC
Q 021445          163 ADVTITDCGEIP  174 (312)
Q Consensus       163 ~~i~I~~~g~l~  174 (312)
                      .+|+|.+||++.
T Consensus       164 ~~v~I~~~g~l~  175 (185)
T 4fru_A          164 KDVTIADCGKIE  175 (185)
T ss_dssp             SCEEEEEEEEEE
T ss_pred             CCEEEEEceEEe
Confidence            999999999985

>2ose_A Probable peptidyl-prolyl CIS-trans isomerase; cyclophilin; 2.04A {Mimivirus}

Probab=100.00  E-value=9.2e-49  Score=336.34  Aligned_cols=178  Identities=28%  Similarity=0.520  Sum_probs=155.0

Q ss_pred             CCCeEEEEEEECCeeeeEEEEEEeCCCCchhHHhHHHHhhCCCCCCCC---------CCCCce-ecCCEEEEeecCCeEE
Q 021445            2 ARPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPN---------TGVPLH-YKGVRFHRVIKGFMIQ   71 (312)
Q Consensus         2 ~~~~v~~d~~~~~~~~G~i~ieL~~~~aP~~~~nF~~l~~~~~~~~~~---------~~~~~~-Y~g~~~~rv~~~~~iq   71 (312)
                      .||+||||+++++++.|+|+||||.+.||+||+||++||++.+.+..+         .|++ | |+|+.||||+|+||||
T Consensus        13 ~~p~v~~di~i~~t~~G~I~ieL~~d~aP~tv~NF~~L~~g~~~~~~p~~~~~~~~~~G~~-~~Y~gt~FHRVi~~FmiQ   91 (234)
T 2ose_A           13 KNPRVYMDIVLNNEIIGRLQIKLFRDAFPAGVENFVQLTNGKTYRVNSNGTGKYKYNRHIN-RTYEGCKFHNVLHNNYIV   91 (234)
T ss_dssp             SSCEEEEEEEETTEEEEEEEEEECGGGCHHHHHHHHHHHHTCCCC---------------C-CCSTTCBCCEEETTTEEE
T ss_pred             CCCEEEEEEEECCcccceEEEEEcCCCCcHHHHHHHHHhcCCccccccccccccccccCCc-eEECCcEEEEEECCCEEE
Confidence            489999999999999999999999999999999999999986332111         1223 5 9999999999999999


Q ss_pred             eCCCCCCCCCCCCcccCCC-----CCCCcccccCCCcceEEeec----CCCCCCCceEEEecCC------CCCCCCCCce
Q 021445           72 GGDISAGDGTGGESIYGLK-----FEDENFELKHERKGMLSMAN----AGPNTNGSQFFITTTR------TSHLDGKHVV  136 (312)
Q Consensus        72 ~G~~~~~~~~~~~~~~~~~-----~~~e~~~~~~~~~G~l~~~~----~~~~~~~sqF~I~~~~------~~~ld~~~~v  136 (312)
                      |||+..++|+|++++||..     |+  ++.++|.++|+||||+    .||++++|||||++++      .++||++|+|
T Consensus        92 gGd~~~g~G~Gg~siyg~~~~p~~f~--~~~l~h~~~G~lsMAn~~~~~gpntngSQFFIt~~~~~~~~g~p~LDg~~tV  169 (234)
T 2ose_A           92 SGDIYNSNGSSAGTVYCDEPIPPVFG--DYFYPHESKGLLSLVPYTDESGNRYYDSTFMITLDDIRPSNVLDELDRDQVV  169 (234)
T ss_dssp             ECCCC----CCCCCTTTTCCBCCCCC--SCCCCSCSTTEEEECCEECTTSCEEBCSCEEEESSCCCTTSSGGGSCTTSEE
T ss_pred             cCCccCCCCCCCccccCCccCccccc--CcCccCCCCCEEEEecccccCCCCCccceEEEEecCccccCCCcccCCCeeE
Confidence            9998778899999999987     66  4589999999999999    8999999999999999      8999999999


Q ss_pred             EEEEEeChHHHHHHhcccCCCCCCcccceEEeeeeeeCCCCCCCCC
Q 021445          137 FGRVIKGMGVVRSIEHVMTGDNDCPIADVTITDCGEIPEGADDGIS  182 (312)
Q Consensus       137 fG~V~~G~~vl~~i~~~~~~~~~~P~~~i~I~~~g~l~~~~~~~~~  182 (312)
                      ||+|++||+||++|+.++++.+++|..+|+|.+|+++.++++++..
T Consensus       170 FG~Vv~GmdVv~~I~~~~t~~~~~P~~~V~I~~~~~l~~p~~~~~k  215 (234)
T 2ose_A          170 IGQVYGGLDVLDKINSMIKPYAGRKYPTFSIGKCGAYLDSSQAQRK  215 (234)
T ss_dssp             EEEEEECHHHHHHHHHHTCCCTTCCCCCEEEEEEEECCCHHHHCC-
T ss_pred             EEEEeCCHHHHHHHHhCCcCCCCCccCCEEEEEEEEecCCcccccc
Confidence            9999999999999999999988999999999999999887766433

>2c3b_A Ppiase, cyclophilin; isomerase, 3D domain swapping, misfolding, Asp F 11, allergen, rotamase; 1.85A {Aspergillus fumigatus} SCOP: b.62.1.1

Probab=100.00  E-value=9.3e-49  Score=322.26  Aligned_cols=160  Identities=54%  Similarity=0.929  Sum_probs=121.9

Q ss_pred             eEEEEEEEC--Ceee---eEEEEEEeCCCCchhHHhHHHHhhCCCCCCCCCCCCce-ecCCEEEEeecCCeEEeCCCCCC
Q 021445            5 RCFLDISIG--VELE---GRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLH-YKGVRFHRVIKGFMIQGGDISAG   78 (312)
Q Consensus         5 ~v~~d~~~~--~~~~---G~i~ieL~~~~aP~~~~nF~~l~~~~~~~~~~~~~~~~-Y~g~~~~rv~~~~~iq~G~~~~~   78 (312)
                      +|||||+++  +...   |+|+||||++.||++|+||++||++.++         + |+|+.||||+|+|+|||||+..+
T Consensus         4 ~vf~di~i~~~~~~~T~~G~i~ieL~~~~aP~t~~NF~~L~~g~~g---------~~Y~g~~fhRvi~~f~iQgGd~~~~   74 (172)
T 2c3b_A            4 QVFFDVEYAPVGTAETKVGRIVFNLFDKDVPKTAKNFRELCKRPAG---------EGYRESTFHRIIPNFMIQGGDFTRG   74 (172)
T ss_dssp             CEEEEEEECCTTCSCCEEEEEEEEECTTTSHHHHHHHHHHHHSCTT---------TSSTTCBCCEEETTTEEEECC----
T ss_pred             EEEEEEEeCCCCceecccccEEEEEcCCCCcHHHHHHHHHhccCCC---------cccCCCEEEEEeCCCEEEeCCcCCC
Confidence            899999999  7655   9999999999999999999999997643         5 99999999999999999997778


Q ss_pred             CCCCCCcccCCCCCCCcccccCCCcceEEeecCCCCCCCceEEEecCCCCCCCCCCceEEEEEe--ChHHHHHHhcccCC
Q 021445           79 DGTGGESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFFITTTRTSHLDGKHVVFGRVIK--GMGVVRSIEHVMTG  156 (312)
Q Consensus        79 ~~~~~~~~~~~~~~~e~~~~~~~~~G~l~~~~~~~~~~~sqF~I~~~~~~~ld~~~~vfG~V~~--G~~vl~~i~~~~~~  156 (312)
                      +|++++++||.+|++|+..++|+++|+||||+.+|++++|||||++.+.++||++|+|||+|++  ||+||++|++++++
T Consensus        75 ~g~gg~si~g~~f~dE~~~~~h~~~G~lsmA~~gp~t~gSQFfIt~~~~~~LDg~~tvFG~Vv~~~G~dvv~~I~~~~t~  154 (172)
T 2c3b_A           75 NGTGGRSIYGDKFADENFSRKHDKKGILSMANAGPNTNGSQFFITTAVTSWLDGKHVVFGEVADEKSYSVVKEIEALGSS  154 (172)
T ss_dssp             ------------------CHHHHHTCEEEEC---------CEEEECSCCTTCCSCCEEEEEECSHHHHHHHHHHHTTCCT
T ss_pred             CCCCCcccCCCcccCcccccccCCCeEEEEeeCCCCCcccEEEEECCCCCccCCCeeEEEEEEecCCHHHHHHHHhCCCC
Confidence            8999999999999999989999999999999999999999999999999999999999999999  99999999999998


Q ss_pred             CCC-CcccceEEeeeeee
Q 021445          157 DND-CPIADVTITDCGEI  173 (312)
Q Consensus       157 ~~~-~P~~~i~I~~~g~l  173 (312)
                      .++ +|..+|+|.+||+|
T Consensus       155 ~~~~~P~~~v~I~~cG~l  172 (172)
T 2c3b_A          155 SGSVRSNTRPKIVNCGEL  172 (172)
T ss_dssp             TSCCCSSSCCEEEEEEEC
T ss_pred             CCCccCCCCeEEEeCeeC
Confidence            754 99999999999985

>2poe_A Cyclophilin-like protein, putative; cryptosporidium parvum cyclophilin isomerase, structural genomics; 2.01A {Cryptosporidium parvum iowa II} PDB: 2qer_A

Probab=100.00  E-value=2.5e-47  Score=316.78  Aligned_cols=154  Identities=44%  Similarity=0.726  Sum_probs=144.1

Q ss_pred             eeeeEEEEEEeCCCCchhHHhHHHHhhCCCCCCCCCCCCceecCCEEEEeecCCeEEeCCCCCCCCCCCCcccCCCCCCC
Q 021445           15 ELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRVIKGFMIQGGDISAGDGTGGESIYGLKFEDE   94 (312)
Q Consensus        15 ~~~G~i~ieL~~~~aP~~~~nF~~l~~~~~~~~~~~~~~~~Y~g~~~~rv~~~~~iq~G~~~~~~~~~~~~~~~~~~~~e   94 (312)
                      ++.|+|+||||++.||++|+||++||+.+           ||+|+.||||+|+|+|||||+. ++|.|+.++||.+|++|
T Consensus        23 t~~G~i~ieL~~~~aP~t~~NF~~L~~~g-----------~Y~g~~FhRvi~~f~iQgGd~~-~~g~gg~si~g~~~~dE   90 (185)
T 2poe_A           23 TNYGDLKFELFCSQCPKACKNFLALSASG-----------YYKNTIFHKNIKGFIIQGGDPT-GTGKGGESIYGRYFDDE   90 (185)
T ss_dssp             ETTEEEEEEECTTTCHHHHHHHHHHHHTT-----------TTTTEEEEEECTTSEEEEEETT-SSSSCCCBTTBSCBCCC
T ss_pred             ecCccEEEEEeCCCCcHHHHHHHHHhccC-----------CCCCCEEEEEECCCEEEcCCCC-CCCCCCCccCCCccccc
Confidence            55899999999999999999999999987           8999999999999999999987 77888999999999999


Q ss_pred             c-ccccCCCcceEEeecCC----CCCCCceEEEecCCCCCCCCCCceEEEEEeChHHHHHHhcccCCCCCCcccceEEee
Q 021445           95 N-FELKHERKGMLSMANAG----PNTNGSQFFITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTITD  169 (312)
Q Consensus        95 ~-~~~~~~~~G~l~~~~~~----~~~~~sqF~I~~~~~~~ld~~~~vfG~V~~G~~vl~~i~~~~~~~~~~P~~~i~I~~  169 (312)
                      + ..++|+++|+||||+.+    |++++|||||++++.++||++|+|||+|++||+||++|+.++++.+++|..+|+|.+
T Consensus        91 ~~~~l~h~~~G~lsmA~~g~~~~p~s~gSQFFIt~~~~~~LDg~~tVFG~Vv~Gmdvv~~I~~~~t~~~~~P~~~v~I~~  170 (185)
T 2poe_A           91 IYPELKYDRRGILSMASKGASKKPNTNGSQFFITYSSLPQLNGEYVIFGKLIDGFETLNTLENCPSDKSHKPIDEIIIKD  170 (185)
T ss_dssp             CCTTSCCCSTTEEEECCSCC-CCCSCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHHSCBCTTSCBSSCCEEEE
T ss_pred             ccCCCccCCCeEEEEecCCCCCCCCCccceEEEECCCCCccCCCeeEEEEEeCCHHHHHHHHhCCcCCCCCcCCCeEEEE
Confidence            8 68999999999999999    999999999999999999999999999999999999999999998899999999999


Q ss_pred             eeeeCCCCCCC
Q 021445          170 CGEIPEGADDG  180 (312)
Q Consensus       170 ~g~l~~~~~~~  180 (312)
                      |+++.+||+++
T Consensus       171 ~~i~~dPf~d~  181 (185)
T 2poe_A          171 IVIHSNPIADQ  181 (185)
T ss_dssp             EEEECCC----
T ss_pred             EEEECCCCCCc
Confidence            99999999875

>2ok3_A Peptidyl-prolyl CIS-trans isomerase-like 3; beta-barrel, helix, disulfide bridge; 2.00A {Homo sapiens} SCOP: b.62.1.1 PDB: 1xyh_A 2oju_A*

Probab=100.00  E-value=4.6e-47  Score=309.43  Aligned_cols=153  Identities=48%  Similarity=0.764  Sum_probs=145.1

Q ss_pred             eeeeEEEEEEeCCCCchhHHhHHHHhhCCCCCCCCCCCCceecCCEEEEeecCCeEEeCCCCCCCCCCCCcccCCCCCCC
Q 021445           15 ELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRVIKGFMIQGGDISAGDGTGGESIYGLKFEDE   94 (312)
Q Consensus        15 ~~~G~i~ieL~~~~aP~~~~nF~~l~~~~~~~~~~~~~~~~Y~g~~~~rv~~~~~iq~G~~~~~~~~~~~~~~~~~~~~e   94 (312)
                      ++.|+|+|+||++.||++|+||++||+++           ||+|+.||||+|+|+|||||+. ++|.++.++||.+|++|
T Consensus         7 T~~G~i~ieL~~~~aP~t~~NF~~L~~~g-----------~Y~g~~fhRvi~~f~iQgGd~~-~~g~gg~si~g~~~~dE   74 (161)
T 2ok3_A            7 TDVGDIKIEVFCERTPKTCENFLALCASN-----------YYNGCIFHRNIKGFMVQTGDPT-GTGRGGNSIWGKKFEDE   74 (161)
T ss_dssp             ETTEEEEEEECTTTCHHHHHHHHHHHHTT-----------TTTTCBCCEEETTTEEEECCTT-SSSSCCCCTTSSCBCCC
T ss_pred             eCCccEEEEEcCCCCcHHHHHHHHHhhhc-----------ccCCCEEEEEECCCEEecCCCC-CCCCCCCcccCCccccc
Confidence            45899999999999999999999999987           8999999999999999999987 67888999999999999


Q ss_pred             cc-cccCCCcceEEeecCCCCCCCceEEEecCCCCCCCCCCceEEEEEeChHHHHHHhcccCCCC-CCcccceEEeeeee
Q 021445           95 NF-ELKHERKGMLSMANAGPNTNGSQFFITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDN-DCPIADVTITDCGE  172 (312)
Q Consensus        95 ~~-~~~~~~~G~l~~~~~~~~~~~sqF~I~~~~~~~ld~~~~vfG~V~~G~~vl~~i~~~~~~~~-~~P~~~i~I~~~g~  172 (312)
                      .. .++|+++|+|||++.+|++++|||||++++.++||++|+|||+|++||+||++|++++++.+ ++|..+|+|.+|.+
T Consensus        75 ~~~~l~h~~~G~lsma~~gp~s~~SQFfI~~~~~~~Ldg~~tvFG~Vv~G~dvv~~I~~~~~~~~~~~P~~~v~I~~~~i  154 (161)
T 2ok3_A           75 YSEYLKHNVRGVVSMANNGPNTNGSQFFITYGKQPHLDMKYTVFGKVIDGLETLDELEKLPVNEKTYRPLNDVHIKDITI  154 (161)
T ss_dssp             CCTTCCSCSTTEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTCCBCTTTCCBSSCCBEEEEEE
T ss_pred             cCcCcCcCCCeEEEEecCCCCCcceEEEEEcCCCCccCCCEeEEEEEeCCHHHHHHHHhCCccCCCCCcCCCeEEEEEEE
Confidence            85 78999999999999999999999999999999999999999999999999999999999887 89999999999999


Q ss_pred             eCCCCCC
Q 021445          173 IPEGADD  179 (312)
Q Consensus       173 l~~~~~~  179 (312)
                      +.+||++
T Consensus       155 ~~~Pf~d  161 (161)
T 2ok3_A          155 HANPFAQ  161 (161)
T ss_dssp             ECCSCC-
T ss_pred             ecCCCCC
Confidence            9888864

>1zkc_A Peptidyl-prolyl CIS-trans isomerase like 2; CIS-trans isomerization, peptidylprolyl isomerase, protein- folding, structural genomics consortium; 1.65A {Homo sapiens} SCOP: b.62.1.1

Probab=100.00  E-value=1.1e-46  Score=314.66  Aligned_cols=154  Identities=44%  Similarity=0.739  Sum_probs=145.5

Q ss_pred             eeeeEEEEEEeCCCCchhHHhHHHHhhCCCCCCCCCCCCceecCCEEEEeecCCeEEeCCCCCCCCCCCCcccCCCCCCC
Q 021445           15 ELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRVIKGFMIQGGDISAGDGTGGESIYGLKFEDE   94 (312)
Q Consensus        15 ~~~G~i~ieL~~~~aP~~~~nF~~l~~~~~~~~~~~~~~~~Y~g~~~~rv~~~~~iq~G~~~~~~~~~~~~~~~~~~~~e   94 (312)
                      ++.|+|+|+||++.||++|+||++||+.+           ||+|+.||||+|+|+|||||+. ++|.|+.++||.+|++|
T Consensus        26 T~~G~I~ieL~~~~aP~tv~NF~~L~~~g-----------~Ydg~~FhRVi~~f~iQgGd~~-~~g~Gg~si~g~~f~dE   93 (197)
T 1zkc_A           26 TNKGDLNLELHCDLTPKTCENFIRLCKKH-----------YYDGTIFHRSIRNFVIQGGDPT-GTGTGGESYWGKPFKDE   93 (197)
T ss_dssp             ETTEEEEEEECTTTSHHHHHHHHHHHHTT-----------TTTTEEEEEEETTTEEEECCTT-SSSSCCCBTTBSCBCCC
T ss_pred             eCCccEEEEEcCCCCcHHHHHHHHHHhcC-----------CCCCCEEEEEeCCCEEEcCCCC-CCCCCCCccCCCccccc
Confidence            34899999999999999999999999987           8999999999999999999986 67889999999999999


Q ss_pred             c-ccccCCCcceEEeecCCCCCCCceEEEecCCCCCCCCCCceEEEEEeChHHHHHHhcccCCCC-CCcccceEEeeeee
Q 021445           95 N-FELKHERKGMLSMANAGPNTNGSQFFITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDN-DCPIADVTITDCGE  172 (312)
Q Consensus        95 ~-~~~~~~~~G~l~~~~~~~~~~~sqF~I~~~~~~~ld~~~~vfG~V~~G~~vl~~i~~~~~~~~-~~P~~~i~I~~~g~  172 (312)
                      . ..++|+++|+|||++.+|++++|||||++++.++||++|+|||+|++||+||++|+.++++.+ ++|..+|+|.+|++
T Consensus        94 ~~~~l~h~~~G~lsMAn~gp~sngSQFFIt~~~~~~LDg~~tVFG~Vv~Gmdvv~~I~~~~t~~~~~~P~~~i~I~~~~v  173 (197)
T 1zkc_A           94 FRPNLSHTGRGILSMANSGPNSNRSQFFITFRSCAYLDKKHTIFGRVVGGFDVLTAMENVESDPKTDRPKEEIRIDATTV  173 (197)
T ss_dssp             CCTTCCSCSTTEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHHSCBCTTTCCBSSCCEEEEEEE
T ss_pred             cCcCcCCCCceEEEEecCCCCCcccEEEEEcCCCCccCCCccEEEEEEcCHHHHHHHHcCCCCCCCCCcCCCeEEEEEEE
Confidence            4 689999999999999999999999999999999999999999999999999999999999887 89999999999999


Q ss_pred             eCCCCCCC
Q 021445          173 IPEGADDG  180 (312)
Q Consensus       173 l~~~~~~~  180 (312)
                      +.+||+++
T Consensus       174 ~~dPf~d~  181 (197)
T 1zkc_A          174 FVDPYEEA  181 (197)
T ss_dssp             EECTTHHH
T ss_pred             EcCCcccH
Confidence            98887764

>2x7k_A Peptidyl-prolyl CIS-trans isomerase-like 1; isomerase-immunosuppressant complex, immunosuppressant; HET: MLE MVA BMT ABA SAR; 1.15A {Homo sapiens} PDB: 1xwn_A

Probab=100.00  E-value=1.4e-46  Score=307.57  Aligned_cols=155  Identities=50%  Similarity=0.846  Sum_probs=147.4

Q ss_pred             CCCeEEEEEEECCeeeeEEEEEEeCCCCchhHHhHHHHhhCCCCCCCCCCCCceecCCEEEEeecCCeEEeCCCCCCCCC
Q 021445            2 ARPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRVIKGFMIQGGDISAGDGT   81 (312)
Q Consensus         2 ~~~~v~~d~~~~~~~~G~i~ieL~~~~aP~~~~nF~~l~~~~~~~~~~~~~~~~Y~g~~~~rv~~~~~iq~G~~~~~~~~   81 (312)
                      .++.|.|+++     .|+|+||||++.||++|+||++||+.+           ||+|+.||||+|+|+|||||+. ++|.
T Consensus        10 ~~~~v~l~t~-----~G~i~ieL~~~~aP~t~~NF~~L~~~g-----------~Y~g~~fhRvi~~f~iQgGd~~-~~g~   72 (166)
T 2x7k_A           10 QPPNVYLETS-----MGIIVLELYWKHAPKTCKNFAELARRG-----------YYNGTKFHRIIKDFMIQGGDPT-GTGR   72 (166)
T ss_dssp             CCSEEEEEET-----TEEEEEEECTTTCHHHHHHHHHHHHHT-----------TTTTEECCEEETTTEEEECCTT-SSSS
T ss_pred             CCCEEEEEeC-----CCcEEEEEccCCCCHHHHHHHHHHhcC-----------CCCCCEEEEEECCCEEEcCCCC-CCCC
Confidence            4788999887     799999999999999999999999987           8999999999999999999986 6788


Q ss_pred             CCCcccCCCCCCCcc-cccCCCcceEEeecCCCCCCCceEEEecCCCCCCCCCCceEEEEEeChHHHHHHhcccCCCCCC
Q 021445           82 GGESIYGLKFEDENF-ELKHERKGMLSMANAGPNTNGSQFFITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDC  160 (312)
Q Consensus        82 ~~~~~~~~~~~~e~~-~~~~~~~G~l~~~~~~~~~~~sqF~I~~~~~~~ld~~~~vfG~V~~G~~vl~~i~~~~~~~~~~  160 (312)
                      ++.++|+..|++|+. .++|.++|+|||++.+|++++|||||++++.++||++|+|||+|++||+||++|+.++++.+++
T Consensus        73 gg~si~g~~~~dE~~~~l~h~~~G~lsmAn~gp~s~gSQFfI~~~~~~~Ldg~~tvFG~Vv~G~dvv~~I~~~~t~~~~~  152 (166)
T 2x7k_A           73 GGASIYGKQFEDELHPDLKFTGAGILAMANAGPDTNGSQFFVTLAPTQWLDGKHTIFGRVCQGIGMVNRVGMVETNSQDR  152 (166)
T ss_dssp             CCCCTTSSCBCCCCCTTSCCCSTTEEEECBSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHTTSCBCTTSC
T ss_pred             CCCccCCCccccccccccCCCCCeEEEEeeCCCCCccceEEEECCCCCccCCCeeEEEEEEcCHHHHHHHHcCCcCCCCC
Confidence            899999999999984 8999999999999999999999999999999999999999999999999999999999998899


Q ss_pred             cccceEEeeeeee
Q 021445          161 PIADVTITDCGEI  173 (312)
Q Consensus       161 P~~~i~I~~~g~l  173 (312)
                      |..+|+|.+|.++
T Consensus       153 P~~~i~I~~~~i~  165 (166)
T 2x7k_A          153 PVDDVKIIKAYPS  165 (166)
T ss_dssp             BSSCCEEEEEEEC
T ss_pred             cCCCeEEEEEEEe
Confidence            9999999999986

>2b71_A Cyclophilin-like protein; structural genomics, structural genomics consortium, SGC, isomerase; 2.50A {Plasmodium yoelii} SCOP: b.62.1.1

Probab=100.00  E-value=1.2e-46  Score=314.43  Aligned_cols=157  Identities=47%  Similarity=0.697  Sum_probs=146.0

Q ss_pred             CCeEEEEEEECCeeeeEEEEEEeCCCCchhHHhHHHHhhCCCCCCCCCCCCceecCCEEEEeecCCeEEeCCCCCCCCCC
Q 021445            3 RPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRVIKGFMIQGGDISAGDGTG   82 (312)
Q Consensus         3 ~~~v~~d~~~~~~~~G~i~ieL~~~~aP~~~~nF~~l~~~~~~~~~~~~~~~~Y~g~~~~rv~~~~~iq~G~~~~~~~~~   82 (312)
                      ++.|.|+++     .|+|+|+||++.||++|+||++||+.+           ||+|+.||||+|+|+|||||+. ++|.|
T Consensus        38 ~~~V~l~T~-----~G~I~ieL~~~~aP~tv~NF~~L~~~g-----------~Y~g~~FhRVi~~f~iQgGd~~-~~g~g  100 (196)
T 2b71_A           38 RGYITIYTN-----LGDFEVELYWYHSPKTCLNFYTLCEMG-----------FYDNTIFHRVIPNFVIQGGDPT-GTGKG  100 (196)
T ss_dssp             SCEEEEEET-----TEEEEEEECTTTSHHHHHHHHHHHHTT-----------TTTTEEEEEEETTTEEEEEETT-SSSSC
T ss_pred             CcEEEEEeC-----CCCEEEEEeCCCCcHHHHHHHHHhhcC-----------CcCCCEEEEEeCCcEEEcCCCC-CCCCC
Confidence            678888876     899999999999999999999999987           8999999999999999999987 77889


Q ss_pred             CCcccCCCCCCCc-ccccCCCcceEEeecCCCCCCCceEEEecCCCCCCCCCCceEEEEEeChHHHHHHhcccCCCCCCc
Q 021445           83 GESIYGLKFEDEN-FELKHERKGMLSMANAGPNTNGSQFFITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCP  161 (312)
Q Consensus        83 ~~~~~~~~~~~e~-~~~~~~~~G~l~~~~~~~~~~~sqF~I~~~~~~~ld~~~~vfG~V~~G~~vl~~i~~~~~~~~~~P  161 (312)
                      ++++||.+|++|. ..++|+++|+|||++.+|++++|||||++++.++||++|+|||+|++||+||++|+.++++.+++|
T Consensus       101 g~si~g~~~~dE~~~~l~h~~~G~lsMAn~gpns~gSQFFIt~~~~~~LDg~~tVFG~Vv~Gmdvv~~I~~~~t~~~~~P  180 (196)
T 2b71_A          101 GKSIYGEYFEDEINKELKHTGAGILSMSNNGPNTNSSQFFITLAPLPHLDGKHTIFARVSKNMTCIENIASVQTTATNKP  180 (196)
T ss_dssp             CCBTTBSCBCCCCCTTCCCCSTTEEEECCSSTTCBSSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTSCBCTTCCB
T ss_pred             CCccCCCcccccccCCcCcCCCeEEEEccCCCCCcccEEEEECCCCCccCCCEeEEEEEecCHHHHHHHHhCCcCCCCCC
Confidence            9999999999995 579999999999999999999999999999999999999999999999999999999999988999


Q ss_pred             ccceEEeeeeeeCCC
Q 021445          162 IADVTITDCGEIPEG  176 (312)
Q Consensus       162 ~~~i~I~~~g~l~~~  176 (312)
                      ..+|+|.+|.++.+|
T Consensus       181 ~~~i~I~~~~i~~dP  195 (196)
T 2b71_A          181 IFDLKILRTSTAVNA  195 (196)
T ss_dssp             SSCCEEEEEEC----
T ss_pred             CCCeEEEEEEEecCC
Confidence            999999999998654

>3bo7_A Peptidyl-prolyl CIS-trans isomerase cyclophilin-T; isomerase-immunosuppressant complex, immunosuppressant, cyclophilin, structural G structural genomics consortium, SGC; HET: BMT; 2.35A {Toxoplasma gondii}

Probab=100.00  E-value=1.3e-46  Score=317.07  Aligned_cols=161  Identities=34%  Similarity=0.553  Sum_probs=142.1

Q ss_pred             CCeEEEEEEECCeeeeEEEEEEeCCCCchhHHhHHHHhhCCCCCCCCCCCCceecCCEEEEeecCCeEEeC-----CCCC
Q 021445            3 RPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRVIKGFMIQGG-----DISA   77 (312)
Q Consensus         3 ~~~v~~d~~~~~~~~G~i~ieL~~~~aP~~~~nF~~l~~~~~~~~~~~~~~~~Y~g~~~~rv~~~~~iq~G-----~~~~   77 (312)
                      +.+|.|+++     .|+|+|+||++.||+||+||++||+.+           ||+|+.||||+|+||||||     |+. 
T Consensus         6 ~~~v~l~T~-----~G~i~ieL~~~~aP~t~~NF~~L~~~g-----------~Ydg~~FhRvi~~f~iQgG~~~~~Dp~-   68 (201)
T 3bo7_A            6 KGYLRIVTT-----QGSLNIELHADMAPRACDSFLRLCAVK-----------YFDDTIFHRCIRNFMIQGGRAELRQPS-   68 (201)
T ss_dssp             CEEEEEEET-----TEEEEEEECTTTCHHHHHHHHHHHHTT-----------TTTTCBEEEEETTTEEEECCGGGCCC--
T ss_pred             ceEEEEEeC-----CCCEEEEEcCCCCcHHHHHHHHHHhcC-----------ccCCCEEEEeeCCCEEEcCcccccCCC-
Confidence            345555554     899999999999999999999999987           8999999999999999999     986 


Q ss_pred             CCCCCCCccc-------CCCCCCCc-ccccCCCcceEEeecCCCCCCCceEEEecCCCCCCCCCCceEEEEEeChHHHHH
Q 021445           78 GDGTGGESIY-------GLKFEDEN-FELKHERKGMLSMANAGPNTNGSQFFITTTRTSHLDGKHVVFGRVIKGMGVVRS  149 (312)
Q Consensus        78 ~~~~~~~~~~-------~~~~~~e~-~~~~~~~~G~l~~~~~~~~~~~sqF~I~~~~~~~ld~~~~vfG~V~~G~~vl~~  149 (312)
                      ++|.|+.++|       |.+|++|. ..++|+++|+|||++.||++++|||||++++.++||++|+|||+|++||+||++
T Consensus        69 ~~g~gg~si~~~~~~~~g~~f~dE~~~~l~h~~~G~lsmA~~gp~s~gSQFFIt~~~~~~LDg~~tVFG~Vv~Gmdvv~~  148 (201)
T 3bo7_A           69 KKKEVQQSPRSISGFPGGAPFEDEFDNRLVHQGIGVLSMANDGKHSNLSEFFITFKSCEHLNNKHTIFGRVVGGLDVLRQ  148 (201)
T ss_dssp             ------CCSSCCCSSTTCCCBCCCCCTTCCCCSTTEEEECCSSTTCBSSCEEEESSCCGGGTTTSCEEEEEEECHHHHHH
T ss_pred             CCCCCCccccccccccCCCcccCcccCCCCcCCCcEEEEeeCCCCCcccEEEEECCCCcccCCCceEEEEEecCHHHHHH
Confidence            6788899999       88999994 688999999999999999999999999999999999999999999999999999


Q ss_pred             HhcccCCCCCCcccceEEeeeeeeCCCCCCC
Q 021445          150 IEHVMTGDNDCPIADVTITDCGEIPEGADDG  180 (312)
Q Consensus       150 i~~~~~~~~~~P~~~i~I~~~g~l~~~~~~~  180 (312)
                      |+.++++.+++|..+|+|.+|+++.+||+++
T Consensus       149 I~~~~t~~~~~P~~~i~I~~~~v~~dPf~d~  179 (201)
T 3bo7_A          149 WEKLETDKKDKPLKPPKVEEIIVFKNPFEDA  179 (201)
T ss_dssp             HTTCCBCTTSCBSSCCBEEEEEEEECCC---
T ss_pred             HHhCCcCCCCCcCCCeEEEEEEEEcCCccCH
Confidence            9999999889999999999999999888885

>2fu0_A Cyclophilin, putative; PFE0505W, cyclosporin-binding domain, structura genomics, structural genomics consortium, SGC, unknown FUNC; 1.80A {Plasmodium falciparum} SCOP: b.62.1.1

Probab=100.00  E-value=4.3e-46  Score=302.86  Aligned_cols=154  Identities=47%  Similarity=0.700  Sum_probs=144.7

Q ss_pred             CCeEEEEEEECCeeeeEEEEEEeCCCCchhHHhHHHHhhCCCCCCCCCCCCceecCCEEEEeecCCeEEeCCCCCCCCCC
Q 021445            3 RPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRVIKGFMIQGGDISAGDGTG   82 (312)
Q Consensus         3 ~~~v~~d~~~~~~~~G~i~ieL~~~~aP~~~~nF~~l~~~~~~~~~~~~~~~~Y~g~~~~rv~~~~~iq~G~~~~~~~~~   82 (312)
                      .+.|.++++     .|+|+||||++.||++|+||++||+.+           ||+|+.||||+|+|+|||||+. ++|.+
T Consensus         5 ~~~v~~~T~-----~G~i~ieL~~~~aP~t~~NF~~L~~~g-----------~Y~g~~fhRvi~~f~iQgGd~~-~~g~g   67 (160)
T 2fu0_A            5 PKSAIIYTT-----MGDIHISLFYKECKKTVQNFSVHSING-----------YYNNCIFHRVIKHFMVQTGDPS-GDGTG   67 (160)
T ss_dssp             CCEEEEEET-----TEEEEEEECTTTCHHHHHHHHHHHHTT-----------TTTTCBCCEEETTTEEEECCTT-SSSSC
T ss_pred             CCEEEEEec-----CccEEEEEeCCCChHHHHHHHHHhccC-----------ccCCCEEEEEECCCEEEeCCcC-CCCCC
Confidence            456666665     899999999999999999999999987           8999999999999999999986 67889


Q ss_pred             CCcccCCCCCCCcc-cccCCCcceEEeecCCCCCCCceEEEecCCCCCCCCCCceEEEEEeChHHHHHHhcccCCCCCCc
Q 021445           83 GESIYGLKFEDENF-ELKHERKGMLSMANAGPNTNGSQFFITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCP  161 (312)
Q Consensus        83 ~~~~~~~~~~~e~~-~~~~~~~G~l~~~~~~~~~~~sqF~I~~~~~~~ld~~~~vfG~V~~G~~vl~~i~~~~~~~~~~P  161 (312)
                      ++++||.+|++|+. .++|.++|+||||+.+|++++|||||++.+.++||++|+|||+|++||+||++|+.++++.+++|
T Consensus        68 g~si~g~~~~dE~~~~l~h~~~G~lsmA~~gp~s~~SQFfI~~~~~~~Ldg~~tvFG~Vv~G~dvv~~I~~~~t~~~~~P  147 (160)
T 2fu0_A           68 GESIWGNEFEDEFFDHLNHSKPFMVSMANCGPNTNGSQFFITTVPCPWLDFKHTVFGKVTQGSKIVLDIEKVRTDKRDKP  147 (160)
T ss_dssp             CCCTTSSCBCCCCBTTBCSSSSSEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTSCBCTTSCB
T ss_pred             CCcccCCCccccccCCcccCCceEEEEecCCCCCcccEEEEECCCCCccCCCcEEEEEEEcCHHHHHHHHhCCcCCCCCc
Confidence            99999999999987 69999999999999999999999999999999999999999999999999999999999988999


Q ss_pred             ccceEEeeeeee
Q 021445          162 IADVTITDCGEI  173 (312)
Q Consensus       162 ~~~i~I~~~g~l  173 (312)
                      ..+|+|.+|.++
T Consensus       148 ~~~v~I~~~~v~  159 (160)
T 2fu0_A          148 LEDIKILNIKIN  159 (160)
T ss_dssp             SSCCBEEEEEEC
T ss_pred             CCCeEEEEEEEe
Confidence            999999999875

>2k7n_A Peptidyl-prolyl CIS-trans isomerase-like 1; beta barrel, disorder-order transition, HOOK-like, mRNA processing, mRNA splicing, rotamase; NMR {Homo sapiens}

Probab=100.00  E-value=7.7e-46  Score=310.58  Aligned_cols=161  Identities=48%  Similarity=0.826  Sum_probs=151.4

Q ss_pred             CCCeEEEEEEECCeeeeEEEEEEeCCCCchhHHhHHHHhhCCCCCCCCCCCCceecCCEEEEeecCCeEEeCCCCCCCCC
Q 021445            2 ARPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRVIKGFMIQGGDISAGDGT   81 (312)
Q Consensus         2 ~~~~v~~d~~~~~~~~G~i~ieL~~~~aP~~~~nF~~l~~~~~~~~~~~~~~~~Y~g~~~~rv~~~~~iq~G~~~~~~~~   81 (312)
                      .++.|.|+++     .|+|+||||.+.||++|+||++||+.+           ||+|+.||||+|+|+|||||+. +++.
T Consensus        10 ~~~~V~l~T~-----~G~I~ieL~~d~aP~tv~NF~~L~~~g-----------~Ydg~~FhRVi~~F~iQgGd~~-~~g~   72 (203)
T 2k7n_A           10 QPPNVYLETS-----MGIIVLELYWKHAPKTCKNFAELARRG-----------YYNGTKFHRIIKDFMIQGGDPT-GTGR   72 (203)
T ss_dssp             CCSEEEEEES-----SCEEEEEECTTTCTTHHHHHHHHHHHT-----------CGGGCEEEEEETTTEEEEECSS-SSSS
T ss_pred             CCCEEEEEeC-----CCcEEEEEccCCCcHHHHHHHHHHhcC-----------ccCCCEEEEEeCCcEEEcCCCC-CCCC
Confidence            4788999987     799999999999999999999999987           8999999999999999999986 6788


Q ss_pred             CCCcccCCCCCCCcc-cccCCCcceEEeecCCCCCCCceEEEecCCCCCCCCCCceEEEEEeChHHHHHHhcccCCCCCC
Q 021445           82 GGESIYGLKFEDENF-ELKHERKGMLSMANAGPNTNGSQFFITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDC  160 (312)
Q Consensus        82 ~~~~~~~~~~~~e~~-~~~~~~~G~l~~~~~~~~~~~sqF~I~~~~~~~ld~~~~vfG~V~~G~~vl~~i~~~~~~~~~~  160 (312)
                      ++.++|+..|++|+. .++|.++|+|+|++.+|++++|||||++.+.++||++|+|||+|++||+||++|+.++++.+++
T Consensus        73 gg~si~g~~f~dE~~~~l~h~~~G~lsMAn~gpnsngSQFFIt~~~~~~LDg~~tVFG~VveGmdvv~kI~~~~t~~~~~  152 (203)
T 2k7n_A           73 GGASIYGKQFEDELHPDLKFTGAGILAMANAGPDTNGSQFFVTLAPTQWLDGKHTIFGRVCQGIGMVNRVGMVETNSQDR  152 (203)
T ss_dssp             CCCTTSCSCBCCCCCCSSCCCSSCEEEEEESSTTCEEEEEEEESSCCCSSTTTSCEEEEEESCHHHHHHHHSCCEEETTE
T ss_pred             CCCccCCCcccccccccccCCCCeEEEEeeCCCCCcccEEEEEcCCCCccCCCeeEEEEEEcCHHHHHHHHcCCcCCCCC
Confidence            899999999999984 8999999999999999999999999999999999999999999999999999999999988889


Q ss_pred             cccceEEeeeeeeCCCCCC
Q 021445          161 PIADVTITDCGEIPEGADD  179 (312)
Q Consensus       161 P~~~i~I~~~g~l~~~~~~  179 (312)
                      |..+|+|.+|+++..+...
T Consensus       153 P~~~V~I~~~~v~~~~~s~  171 (203)
T 2k7n_A          153 PVDDVKIIKAYPSGGGGSG  171 (203)
T ss_dssp             ECCCCBEEEEEECCCCCCC
T ss_pred             cCCCeEEEEEEEEecCCCC
Confidence            9999999999999875554

>2hq6_A Serologically defined colon cancer antigen 10; protein folding, peptidyl-prolyl CIS-trans isomerase, struct genomics; 1.75A {Homo sapiens}

Probab=100.00  E-value=1.3e-45  Score=306.19  Aligned_cols=159  Identities=40%  Similarity=0.732  Sum_probs=148.5

Q ss_pred             CCeEEEEEEECCeeeeEEEEEEeCCCCchhHHhHHHHhhCCCCCCCCCCCCceecCCEEEEeecCCeEEeCCCCCCCCCC
Q 021445            3 RPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRVIKGFMIQGGDISAGDGTG   82 (312)
Q Consensus         3 ~~~v~~d~~~~~~~~G~i~ieL~~~~aP~~~~nF~~l~~~~~~~~~~~~~~~~Y~g~~~~rv~~~~~iq~G~~~~~~~~~   82 (312)
                      +++|+|+++     .|+|+||||++.||++|+||++||+.+           ||+|+.||||+|+|+|||||+. ++|.|
T Consensus        24 ~~~V~l~T~-----~G~I~ieL~~~~aP~tv~NF~~L~~~g-----------~Y~g~~FhRvi~~f~iQgGd~~-~~g~g   86 (185)
T 2hq6_A           24 NGKVLLKTT-----AGDIDIELWSKEAPKACRNFIQLCLEA-----------YYDNTIFHRVVPGFIVQGGDPT-GTGSG   86 (185)
T ss_dssp             BCEEEEEET-----TEEEEEEEBTTTCHHHHHHHHHHHHTT-----------TTTTEECCEEETTTEEEECCTT-SSSSC
T ss_pred             CCEEEEEeC-----CccEEEEEeCCCCcHHHHHHHHHhhcC-----------ccCCCEEEEEECCCEEEcCCCC-CCCCC
Confidence            678999987     799999999999999999999999987           8999999999999999999986 67888


Q ss_pred             CCcccCCCCCCCcc-cccCCCcceEEeecCCCCCCCceEEEecCCCCCCCCCCceEEEEEeChHHH--HHHhcccCCCCC
Q 021445           83 GESIYGLKFEDENF-ELKHERKGMLSMANAGPNTNGSQFFITTTRTSHLDGKHVVFGRVIKGMGVV--RSIEHVMTGDND  159 (312)
Q Consensus        83 ~~~~~~~~~~~e~~-~~~~~~~G~l~~~~~~~~~~~sqF~I~~~~~~~ld~~~~vfG~V~~G~~vl--~~i~~~~~~~~~  159 (312)
                      +.++||.+|++|+. .++|+++|+||||+.++++++|||||++++.++||++|+|||+|+ |++++  ++|+.++++.++
T Consensus        87 g~si~g~~~~dE~~~~l~h~~~G~lsMA~~g~~s~gSQFFIt~~~~~~LDg~~tVFG~V~-G~~v~~~~~i~~~~~~~~~  165 (185)
T 2hq6_A           87 GESIYGAPFKDEFHSRLRFNRRGLVAMANAGSHDNGSQFFFTLGRADELNNKHTIFGKVT-GDTVYNMLRLSEVDIDDDE  165 (185)
T ss_dssp             CCCTTSSCBCCCCBTTBCSCSSSEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEC-GGGHHHHHHTTCSCBCTTS
T ss_pred             CCcccCCccccccccCcccCCCeEEEEccCCCCCccceEEEECCCCCccCCCceEEEEEE-eCeeehhhHHhhCCcCCCC
Confidence            99999999999986 688999999999999999999999999999999999999999999 88774  689999998889


Q ss_pred             CcccceEEeeeeeeCCCCCC
Q 021445          160 CPIADVTITDCGEIPEGADD  179 (312)
Q Consensus       160 ~P~~~i~I~~~g~l~~~~~~  179 (312)
                      +|..+|+|.+|+++.+||++
T Consensus       166 ~P~~~v~I~~~~v~~~Pf~d  185 (185)
T 2hq6_A          166 RPHNPHKIKSCEVLFNPFDD  185 (185)
T ss_dssp             CBSSCCEEEEEEEEECTTC-
T ss_pred             CCCCCeEEEEEEEeCCCCCC
Confidence            99999999999999988874

>1w74_A Peptidyl-prolyl CIS-trans isomerase A; cyclophilin, ppiase, RV0009, rotamase, structural proteomics in europe, spine; 2.6A {Mycobacterium tuberculosis} SCOP: b.62.1.1

Probab=100.00  E-value=3.3e-45  Score=304.95  Aligned_cols=163  Identities=44%  Similarity=0.696  Sum_probs=144.8

Q ss_pred             CCCeEEEEEEECCeeeeEEEEEEeCCCCchhHHhHHHHhhCCCCCCCC-CC---CCceecCCEEEEeecCCeEEeCCCCC
Q 021445            2 ARPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPN-TG---VPLHYKGVRFHRVIKGFMIQGGDISA   77 (312)
Q Consensus         2 ~~~~v~~d~~~~~~~~G~i~ieL~~~~aP~~~~nF~~l~~~~~~~~~~-~~---~~~~Y~g~~~~rv~~~~~iq~G~~~~   77 (312)
                      +++.|.|++.     .|+|+|+||++.||+||+||++||++.+++... ++   ..+||+|+.||||+|+|||||||+. 
T Consensus        22 ~~~~v~l~t~-----~G~I~ieL~~~~aP~tv~NF~~L~tG~~~~~~~~~g~~~~~~~Y~g~~FhRVi~~fmiQgGd~~-   95 (191)
T 1w74_A           22 ATATATLHTN-----RGDIKIALFGNHAPKTVANFVGLAQGTKDYSTQNASGGPSGPFYDGAVFHRVIQGFMIQGGDPT-   95 (191)
T ss_dssp             CSEEEEEEET-----TEEEEEEECTTTSHHHHHHHHHHHHTCSCCSSCCTTBSSSSCSSTTEEEEEEETTTEEEECCTT-
T ss_pred             CCeEEEEEec-----ceeEEEEEcCCCChHHHHHHHHHhcCCcccccccccccccCCccCCCEEEEEeCCCEEecCCCC-
Confidence            4566777665     899999999999999999999999987765321 22   2369999999999999999999975 


Q ss_pred             CCCCCCCcccCCCCCCCc-ccccCCCcceEEeecCCCCCCCceEEEecCCCCCCCCCCceEEEEEe--ChHHHHHHhccc
Q 021445           78 GDGTGGESIYGLKFEDEN-FELKHERKGMLSMANAGPNTNGSQFFITTTRTSHLDGKHVVFGRVIK--GMGVVRSIEHVM  154 (312)
Q Consensus        78 ~~~~~~~~~~~~~~~~e~-~~~~~~~~G~l~~~~~~~~~~~sqF~I~~~~~~~ld~~~~vfG~V~~--G~~vl~~i~~~~  154 (312)
                      ++|+++   +|..|++|. ..++|+++|+||||+.||++++||||||+.+.++||++|+|||+|++  ||+||++|+.++
T Consensus        96 g~G~gg---~g~~f~dE~~~~l~h~~~G~lsMAn~gpntngSQFFIt~~~~~~LDg~~tVFG~Vv~~~Gmdvv~~I~~~~  172 (191)
T 1w74_A           96 GTGRGG---PGYKFADEFHPELQFDKPYLLAMANAGPGTNGSQFFITVGKTPHLNRRHTIFGEVIDAESQRVVEAISKTA  172 (191)
T ss_dssp             SSSSCC---SSCCBCCCCCTTCCSCSSSEEEECCSSTTCBSSCEEEESSCCGGGTTTSCEEEEECSHHHHHHHHHHHTSC
T ss_pred             CCCCCC---CCCccccccccCCCcCCCcEEEEeeCCCCCccceEEEEcCCCcccCCCeeEEEEEEECCCHHHHHHHHcCC
Confidence            566666   588899994 68999999999999999999999999999999999999999999999  999999999999


Q ss_pred             CCCCCCcccceEEeeeeee
Q 021445          155 TGDNDCPIADVTITDCGEI  173 (312)
Q Consensus       155 ~~~~~~P~~~i~I~~~g~l  173 (312)
                      ++.+++|..+|+|.+|+++
T Consensus       173 t~~~~~P~~~v~I~~~~i~  191 (191)
T 1w74_A          173 TDGNDRPTDPVVIESITIS  191 (191)
T ss_dssp             BCTTSCBSSCCEEEEEEEC
T ss_pred             cCCCCCcCCCeEEEEEEEC
Confidence            9988999999999999974

>2a2n_A Peptidylprolyl isomerase domain and WD repeat CON; CIS-trans isomerization, protein-folding, peptidylprolyl ISO structural genomics; 1.65A {Homo sapiens} SCOP: b.62.1.1

Probab=100.00  E-value=1.2e-45  Score=304.31  Aligned_cols=152  Identities=51%  Similarity=0.744  Sum_probs=141.5

Q ss_pred             EEEECCeeeeEEEEEEeCCCCchhHHhHHHHhhCCCCCCCCCCCCceecCCEEEEeecCCeEEeCCCCCCCCCCCCcccC
Q 021445            9 DISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRVIKGFMIQGGDISAGDGTGGESIYG   88 (312)
Q Consensus         9 d~~~~~~~~G~i~ieL~~~~aP~~~~nF~~l~~~~~~~~~~~~~~~~Y~g~~~~rv~~~~~iq~G~~~~~~~~~~~~~~~   88 (312)
                      +..+-.++.|+|+|+||++.||++|+||++||+.+           ||+|+.||||+|+|+|||||+. ++|.++.++||
T Consensus        22 ~~v~~~t~~G~i~ieL~~~~aP~t~~NF~~L~~~g-----------~Y~g~~FhRvi~~f~iQgGd~~-~~g~gg~si~g   89 (176)
T 2a2n_A           22 DSAIIHTSMGDIHTKLFPVECPKTVENFCVHSRNG-----------YYNGHTFHRIIKGFMIQTGDPT-GTGMGGESIWG   89 (176)
T ss_dssp             SEEEEEETTEEEEEEECTTTCHHHHHHHHHHHHTT-----------TTTTCBCCEEETTTEEEECCTT-SSSSCCCCTTS
T ss_pred             CEEEEEecCccEEEEEeCCCChHHHHHHHHHhhcC-----------ccCCCEEEEEECCcEEEccCCC-CCCCCCCcccC
Confidence            33344456899999999999999999999999987           8999999999999999999986 67889999999


Q ss_pred             CCCCCCcc-cccCCCcceEEeecCCCCCCCceEEEecCCCCCCCCCCceEEEEEeChHHHHHHhcccCC-CCCCcccceE
Q 021445           89 LKFEDENF-ELKHERKGMLSMANAGPNTNGSQFFITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTG-DNDCPIADVT  166 (312)
Q Consensus        89 ~~~~~e~~-~~~~~~~G~l~~~~~~~~~~~sqF~I~~~~~~~ld~~~~vfG~V~~G~~vl~~i~~~~~~-~~~~P~~~i~  166 (312)
                      ..|++|+. .++|.++|+|||++.+|++++|||||++.+.++||++|+|||+|++||+||++|+.++++ .+++|..+|+
T Consensus        90 ~~~~dE~~~~l~h~~~G~lsmA~~gp~s~gSQFFIt~~~~~~LDg~~tVFG~Vv~Gmdvv~~I~~~~t~~~~~~P~~~v~  169 (176)
T 2a2n_A           90 GEFEDEFHSTLRHDRPYTLSMANAGSNTNGSQFFITVVPTPWLDNKHTVFGRVTKGMEVVQRISNVKVNPKTDKPYEDVS  169 (176)
T ss_dssp             SCBCCCCCTTCCSCSSSEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTSCBCTTTCCBSSCCB
T ss_pred             CccccccccccccCCceEEEEEeCCCCCcccEEEEECCCCCccCCCeeEEEEEeCCHHHHHHHHcCCccCCCCccCCCeE
Confidence            99999987 699999999999999999999999999999999999999999999999999999999998 5799999999


Q ss_pred             Eeeeee
Q 021445          167 ITDCGE  172 (312)
Q Consensus       167 I~~~g~  172 (312)
                      |.+|.+
T Consensus       170 I~~v~v  175 (176)
T 2a2n_A          170 IINITV  175 (176)
T ss_dssp             EEEEEE
T ss_pred             EEEEEE
Confidence            999976

>3bkp_A Cyclophilin; malaria, isomerase, structural GENO structural genomics consortium, SGC; 1.80A {Toxoplasma gondii}

Probab=100.00  E-value=3.6e-44  Score=307.13  Aligned_cols=162  Identities=33%  Similarity=0.577  Sum_probs=149.0

Q ss_pred             CCeEEEEEEECCeeeeEEEEEEeCCCCchhHHhHHHHhhCCCCCCCCCCCCceecCCEEEEeecCCeEEeCCCCCCCCCC
Q 021445            3 RPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRVIKGFMIQGGDISAGDGTG   82 (312)
Q Consensus         3 ~~~v~~d~~~~~~~~G~i~ieL~~~~aP~~~~nF~~l~~~~~~~~~~~~~~~~Y~g~~~~rv~~~~~iq~G~~~~~~~~~   82 (312)
                      +++|+|+++     .|+|+|+||.+.||++|+||++||+.+           ||+|+.||||+|+|||||||+. ++|+|
T Consensus        21 ~~~V~l~T~-----~G~I~ieL~~d~aP~tv~NF~~L~~~g-----------~Ydgt~FhRVi~~FmiQgGdp~-~~G~G   83 (232)
T 3bkp_A           21 RGKVVLHTS-----LGDLDVELWARECPLACRNFVQLCLEG-----------YYVNTIFHRVVKDFIVQGGDPT-GTGRG   83 (232)
T ss_dssp             BCEEEEEET-----TEEEEEEEBTTTCHHHHHHHHHHHHHT-----------TTTTCBEEEEETTTEEEECCTT-SSSSC
T ss_pred             CCEEEEEEC-----CCcEEEEEcCCCCcHHHHHHHHHhhcC-----------ccCCCEEEEEeCCCEEEcCCCC-CCCCC
Confidence            578888887     799999999999999999999999987           8999999999999999999987 77889


Q ss_pred             CCccc--CCCCCCCcc-cccCCCcceEEeecCCC--------------CCCCceEEEecCCCCCCCCCCceEEEEEeChH
Q 021445           83 GESIY--GLKFEDENF-ELKHERKGMLSMANAGP--------------NTNGSQFFITTTRTSHLDGKHVVFGRVIKGMG  145 (312)
Q Consensus        83 ~~~~~--~~~~~~e~~-~~~~~~~G~l~~~~~~~--------------~~~~sqF~I~~~~~~~ld~~~~vfG~V~~G~~  145 (312)
                      +.++|  |.+|++|.. .++|+.+|+|||++.++              ++++||||||+++.++||++|+|||+|+ |++
T Consensus        84 g~si~~~g~~f~dE~~~~l~h~~~G~lsMA~~g~~~~~~~n~e~g~~~~sngSQFFIt~~~~p~LDg~~tVFG~Vv-g~~  162 (232)
T 3bkp_A           84 GADTTFDGKPFDVETHPRLKFRYRGLVGVANLGRSSKDAENDERGRSLGTNGNQFFITLARADVLNNAYTLFGKVT-GHT  162 (232)
T ss_dssp             CCCCTTTTCCBCCCCCTTCCCCSTTEEEECCCC----------------CBCSCEEEESSCCGGGTTTSCEEEEEC-GGG
T ss_pred             CCccccCCCccCCccccCcCcCCCeEEEEeccCCcccccccccccccCCCcCCEEEEECCCCcccCCCccEEEEEE-eCc
Confidence            99999  899999986 78999999999999997              6999999999999999999999999999 776


Q ss_pred             H--HHHHhcccCCCCCCcccceEEeeeeeeCCCCCCCCC
Q 021445          146 V--VRSIEHVMTGDNDCPIADVTITDCGEIPEGADDGIS  182 (312)
Q Consensus       146 v--l~~i~~~~~~~~~~P~~~i~I~~~g~l~~~~~~~~~  182 (312)
                      +  +++|+.++++.+++|..+|+|.+|+++.+||++..+
T Consensus       163 v~~v~kI~~~~t~~~~~P~~~i~I~~~~vl~dPf~d~~~  201 (232)
T 3bkp_A          163 LYNLMKFNDLEVGKEDRPMTPPFIKSVDVLWNPFEDLVP  201 (232)
T ss_dssp             HHHHHHHTTSCBCGGGCBSSCCBEEEEEEEECCCTTCCC
T ss_pred             hHHHHHHHcCCcCCCCCcCCCeEEEEEEEEcCChhhhhh
Confidence            6  889999999888999999999999999999987643

>1v9t_A Cyclophilin B; beta barrel, isomerase-isomerase inhibitor complex; HET: NIT; 1.70A {Escherichia coli} SCOP: b.62.1.1 PDB: 1j2a_A* 1vai_A* 1clh_A

Probab=100.00  E-value=8.2e-44  Score=291.86  Aligned_cols=153  Identities=31%  Similarity=0.502  Sum_probs=137.7

Q ss_pred             CCCeEEEEEEECCeeeeEEEEEEeCCCCchhHHhHHHHhhCCCCCCCCCCCCceecCCEEEEeecCCeEEeCCCCCCCCC
Q 021445            2 ARPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRVIKGFMIQGGDISAGDGT   81 (312)
Q Consensus         2 ~~~~v~~d~~~~~~~~G~i~ieL~~~~aP~~~~nF~~l~~~~~~~~~~~~~~~~Y~g~~~~rv~~~~~iq~G~~~~~~~~   81 (312)
                      ++|+|+|+++     .|+|+|+||++.||+||+||++||+.+           ||+|+.||||+|+|||||||+....+ 
T Consensus         3 ~~~~v~~~t~-----~G~i~ieL~~~~aP~t~~NF~~L~~~g-----------~Y~g~~FhRvi~~f~iQgGd~~~~~~-   65 (166)
T 1v9t_A            3 GDPHVLLTTS-----AGNIELELDKQKAPVSVQNFVDYVNSG-----------FYNNTTFHRVIPGFMIQGGGFTEQMQ-   65 (166)
T ss_dssp             CSCEEEEEET-----TEEEEEEECTTTCHHHHHHHHHHHHTT-----------TTTTCBEEEEETTTEEEESSBCTTCC-
T ss_pred             CCeEEEEEeC-----CccEEEEEcCCCCcHHHHHHHHHhccC-----------CCCCCEEEEEECCcEEEcCCcCcCCC-
Confidence            4899999976     899999999999999999999999987           89999999999999999999864322 


Q ss_pred             CCCcccCCCCCCCcccccCCCcceEEeecC-CCCCCCceEEEecCCCCCCCCC-----CceEEEEEeChHHHHHHhcccC
Q 021445           82 GGESIYGLKFEDENFELKHERKGMLSMANA-GPNTNGSQFFITTTRTSHLDGK-----HVVFGRVIKGMGVVRSIEHVMT  155 (312)
Q Consensus        82 ~~~~~~~~~~~~e~~~~~~~~~G~l~~~~~-~~~~~~sqF~I~~~~~~~ld~~-----~~vfG~V~~G~~vl~~i~~~~~  155 (312)
                        ...++.+|++|.....|+.+|+||||+. +|++++|||||++.+.++||++     |+|||+|++||+||++|+.+++
T Consensus        66 --~~~~g~~~~dE~~~~l~~~~G~lsmA~~~~p~t~gSQFfI~~~~~~~Ld~~~~~~~~tvFG~Vv~G~dvv~~I~~~~~  143 (166)
T 1v9t_A           66 --QKKPNPPIKNEADNGLRNTRGTIAMARTADKDSATSQFFINVADNAFLDHGQRDFGYAVFGKVVKGMDVADKISQVPT  143 (166)
T ss_dssp             --BCCCCCCBCCCGGGSCCCCTTEEEECCCSSTTCBCSCEEEESSCCGGGSCCSSCCCCCEEEEEEECHHHHHHHHTSCE
T ss_pred             --CCCCCCcccccccccccCCceEEEEeecCCCCCccceEEEEeCCccccCCccCcCCeeEEEEEecCHHHHHHHHhCCC
Confidence              2345778999987656678999999997 5999999999999999999998     9999999999999999999998


Q ss_pred             CC----CCCcccceEEeeeeee
Q 021445          156 GD----NDCPIADVTITDCGEI  173 (312)
Q Consensus       156 ~~----~~~P~~~i~I~~~g~l  173 (312)
                      +.    .++|..+|+|.+|.++
T Consensus       144 ~~~~~~~~~P~~~v~I~~~~v~  165 (166)
T 1v9t_A          144 HDVGPYQNVPSKPVVILSATVL  165 (166)
T ss_dssp             EEETTEEEEESSCCBEEEEEEC
T ss_pred             CCCCccCCCcCCCeEEEEEEEe
Confidence            76    4789999999999987

>3s6m_A Peptidyl-prolyl CIS-trans isomerase; seattle structural genomics center for infectious disease; 1.65A {Burkholderia pseudomallei} SCOP: b.62.1.1 PDB: 3t1u_A*

Probab=100.00  E-value=7e-43  Score=287.01  Aligned_cols=153  Identities=33%  Similarity=0.502  Sum_probs=136.4

Q ss_pred             CCCeEEEEEEECCeeeeEEEEEEeCCCCchhHHhHHHHhhCCCCCCCCCCCCceecCCEEEEeecCCeEEeCCCCCCCCC
Q 021445            2 ARPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRVIKGFMIQGGDISAGDGT   81 (312)
Q Consensus         2 ~~~~v~~d~~~~~~~~G~i~ieL~~~~aP~~~~nF~~l~~~~~~~~~~~~~~~~Y~g~~~~rv~~~~~iq~G~~~~~~~~   81 (312)
                      .+|.|.|+++     .|+|+||||++.||+||+||++||+.+           ||+|+.||||+|+|+|||||+..+.+ 
T Consensus         2 p~~~v~l~T~-----~G~i~ieL~~~~aP~t~~NF~~L~~~g-----------~Y~g~~FhRvi~~f~iQgGd~~~~~~-   64 (167)
T 3s6m_A            2 PGSMVELHTN-----HGVIKLELDEAKAPKTVENFLNYVKKG-----------HYDGTIFHRVINGFMIQGGGFEPGLK-   64 (167)
T ss_dssp             CCCEEEEEET-----TEEEEEEECTTTCHHHHHHHHHHHHHT-----------TTTTEECCEEETTTEEEESSEETTTE-
T ss_pred             CCcEEEEEeC-----CceEEEEEeCCCCcHHHHHHHHHhhhc-----------ccCCCEeEEecCCcEEEeccccCCCC-
Confidence            4788888877     899999999999999999999999987           89999999999999999999864332 


Q ss_pred             CCCcccCCCCCCCcccccCCCcceEEeec-CCCCCCCceEEEecCCCCCCCCC--------CceEEEEEeChHHHHHHhc
Q 021445           82 GGESIYGLKFEDENFELKHERKGMLSMAN-AGPNTNGSQFFITTTRTSHLDGK--------HVVFGRVIKGMGVVRSIEH  152 (312)
Q Consensus        82 ~~~~~~~~~~~~e~~~~~~~~~G~l~~~~-~~~~~~~sqF~I~~~~~~~ld~~--------~~vfG~V~~G~~vl~~i~~  152 (312)
                        ...++.++++|.....++.+|+||||+ .+|++++|||||++.+.++||++        |+|||+|++||+||++|++
T Consensus        65 --~~~~~~~~~~E~~~~l~~~~G~lsmA~~~~p~t~gSQFfI~~~~~~~Ld~~~~~~~~~~~~VFG~Vv~G~dvv~~I~~  142 (167)
T 3s6m_A           65 --QKPTDAPIANEANNGLKNDTYTIAMARTNDPHSATAQFFINVNDNEFLNHSSPTPQGWGYAVFGKVVEGQDIVDKIKA  142 (167)
T ss_dssp             --ECCCCCCBCCCGGGCCCCCTTEEEECCCSSTTCBCSCEEEESSCCGGGSCCSSSTTTCCCCEEEEEEECHHHHHHHTT
T ss_pred             --CCCCCCccCCcccccccCCccEEEEecCCCCCCccceEEEEcCCchhcCCcccccCCCCceEEEEEEcCHHHHHHHHc
Confidence              234577788886544445899999999 57999999999999999999998        9999999999999999999


Q ss_pred             ccCCC----CCCcccceEEeeeeee
Q 021445          153 VMTGD----NDCPIADVTITDCGEI  173 (312)
Q Consensus       153 ~~~~~----~~~P~~~i~I~~~g~l  173 (312)
                      ++++.    +++|.++|+|.+|.++
T Consensus       143 ~~t~~~~~~~~~P~~~v~I~~~~il  167 (167)
T 3s6m_A          143 VKTGSKGFHQDVPNDDVVIEKAVVV  167 (167)
T ss_dssp             SCBBC---CBTCBSSCCEEEEEEEC
T ss_pred             CCcCCCcccCCCcCCCeEEEEEEEC
Confidence            99987    5899999999999875

>1lop_A Cyclophilin A; rotamase, isomerase-isomerase inhibitor complex; HET: NIT; 1.80A {Escherichia coli} SCOP: b.62.1.1 PDB: 2nul_A 2rs4_A

Probab=100.00  E-value=5.3e-43  Score=286.47  Aligned_cols=144  Identities=35%  Similarity=0.588  Sum_probs=130.5

Q ss_pred             eeeeEEEEEEeCCCCchhHHhHHHHhhCCCCCCCCCCCCceecCCEEEEeecCCeEEeCCCCCCCCCCCCcccCCCCCCC
Q 021445           15 ELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRVIKGFMIQGGDISAGDGTGGESIYGLKFEDE   94 (312)
Q Consensus        15 ~~~G~i~ieL~~~~aP~~~~nF~~l~~~~~~~~~~~~~~~~Y~g~~~~rv~~~~~iq~G~~~~~~~~~~~~~~~~~~~~e   94 (312)
                      ++.|+|+|+||++.||+||+||++||+.+           ||+|+.||||+|+|||||||+..+.   +.++++.+|++|
T Consensus         6 T~~G~i~ieL~~~~aP~t~~NF~~L~~~g-----------~Y~g~~FhRvi~~f~iQgGd~~~~~---g~~~~g~~~~dE   71 (164)
T 1lop_A            6 TNHGDIVIKTFDDKAPETVKNFLDYCREG-----------FYNNTIFHRVINGFMIQGGGFEPGM---KQKATKEPIKNE   71 (164)
T ss_dssp             ETTEEEEEEECTTTSHHHHHHHHHHHHTT-----------TTTTEECCEEETTTEEEESSEETTT---EECCCCCCBCCC
T ss_pred             eCCCCEEEEEeCCCCcHHHHHHHHHHhcC-----------CCCCCEEEEEeCCceEecCCcccCC---CcCCCCCccccc
Confidence            34899999999999999999999999987           8999999999999999999986433   345778899999


Q ss_pred             ccc-ccCCCcceEEeecC-CCCCCCceEEEecCCCCCCCCC--------CceEEEEEeChHHHHHHhcccCCC----CCC
Q 021445           95 NFE-LKHERKGMLSMANA-GPNTNGSQFFITTTRTSHLDGK--------HVVFGRVIKGMGVVRSIEHVMTGD----NDC  160 (312)
Q Consensus        95 ~~~-~~~~~~G~l~~~~~-~~~~~~sqF~I~~~~~~~ld~~--------~~vfG~V~~G~~vl~~i~~~~~~~----~~~  160 (312)
                      +.. ++| .+|+||||+. +|++++|||||++.+.++||++        |+|||+|++||+||++|+.++++.    +++
T Consensus        72 ~~~~l~~-~~G~lsmA~~~~p~s~gSQFfI~~~~~~~Ld~~~~~~~~~~~tvFG~Vv~G~dvv~~I~~~~t~~~~~~~~~  150 (164)
T 1lop_A           72 ANNGLKN-TRGTLAMARTQAPHSATAQFFINVVDNDFLNFSGESLQGWGYCVFAEVVDGMDEVDKIKGVATGRSGMHQDV  150 (164)
T ss_dssp             CCSSCCC-CTTEEEECCCSSTTCBCSCEEEESSCCGGGSCCSSSTTTSCCCEEEEEEECHHHHHHHHTSCEEEETTEEEE
T ss_pred             ccccccc-CccEEEEeecCCCCCccceEEEEcCCccccCCccccccCCceEEEEEEecCHHHHHHHHhCCcCCccccCCC
Confidence            875 555 7999999975 7999999999999999999998        999999999999999999999875    479


Q ss_pred             cccceEEeeeeee
Q 021445          161 PIADVTITDCGEI  173 (312)
Q Consensus       161 P~~~i~I~~~g~l  173 (312)
                      |..+|+|.+|+++
T Consensus       151 P~~~v~I~~~~v~  163 (164)
T 1lop_A          151 PKEDVIIESVTVS  163 (164)
T ss_dssp             ESSCCEEEEEEEC
T ss_pred             cCCCeEEEEEEEe
Confidence            9999999999987

>3rfy_A Peptidyl-prolyl CIS-trans isomerase CYP38, chloro; cyclophilin, peptidyl prolyl isomerase, ppiase, TLP,; 2.39A {Arabidopsis thaliana}

Probab=100.00  E-value=3.1e-37  Score=278.64  Aligned_cols=137  Identities=25%  Similarity=0.402  Sum_probs=121.4

Q ss_pred             CCeEEEEEEECC---eeeeEEEEEEeCCCCchhHHhHHHHhhCCCCCCCCCCCCceecCCEEEEeecCCeEEeCCCCCCC
Q 021445            3 RPRCFLDISIGV---ELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRVIKGFMIQGGDISAGD   79 (312)
Q Consensus         3 ~~~v~~d~~~~~---~~~G~i~ieL~~~~aP~~~~nF~~l~~~~~~~~~~~~~~~~Y~g~~~~rv~~~~~iq~G~~~~~~   79 (312)
                      |+.|.|++++.+   +..|+|+|+||++.||+||+||++||+.+           ||+|+.|||| |+|||||||+. ++
T Consensus       170 ra~V~m~t~~~~~~~~~~G~I~IeL~~d~AP~Tv~NFl~L~~~G-----------fYdGt~FHRV-~gFmIQgGDp~-g~  236 (369)
T 3rfy_A          170 RASVDMKVKIKDNPNIEDCVFRIVLDGYNAPVTAGNFVDLVERH-----------FYDGMEIQRS-DGFVVQTGDPE-GP  236 (369)
T ss_dssp             EEEEEEEEECCSCSSCSEEEEEEEEETTTCHHHHHHHHHHHHTT-----------TTTTEECEEE-EEEEECCCCCC-CC
T ss_pred             CeEEEEEEeccCCCcccceEEEEEEeCCCCcHHHHHHHHHhhcC-----------CcCCCeeeee-CCeeEecCCCC-CC
Confidence            567778887653   36899999999999999999999999987           9999999999 99999999986 45


Q ss_pred             CCC---------------------CCcccCCCCCCCcc-----cccCCCcceEEeecC--CCCCCCceEEEec-------
Q 021445           80 GTG---------------------GESIYGLKFEDENF-----ELKHERKGMLSMANA--GPNTNGSQFFITT-------  124 (312)
Q Consensus        80 ~~~---------------------~~~~~~~~~~~e~~-----~~~~~~~G~l~~~~~--~~~~~~sqF~I~~-------  124 (312)
                      |+|                     +.++|+..|++|++     .++|+.+|+|||++.  +|++++|||||++       
T Consensus       237 G~G~~~~~~g~~~~iP~E~~~~G~g~piyg~~fedegf~~~~~~L~h~~~G~LsMAns~~gPnSngSQFFItl~d~~L~~  316 (369)
T 3rfy_A          237 AEGFIDPSTEKTRTVPLEIMVTGEKTPFYGSTLEELGLYKAQVVIPFNAFGTMAMAREEFENDSGSSQVFWLLKESELTP  316 (369)
T ss_dssp             CSCCCSCCCCCCCSSSSSSCSSSSCCSCCCSSTGGGTEEEEEEEECCCCCCCCCCSSCCCCCCCSSCCCCCCCEEEEECS
T ss_pred             CCCccCcccCcCcccCccccccCCCCCcCCCccccccccccccccccCCCceEEEeecCCCCCCccceEEEEecccccCC
Confidence            544                     35678888888754     688999999999998  7999999999999       


Q ss_pred             CCCCCCCCCCceEEEEEeChHHHHHHhc
Q 021445          125 TRTSHLDGKHVVFGRVIKGMGVVRSIEH  152 (312)
Q Consensus       125 ~~~~~ld~~~~vfG~V~~G~~vl~~i~~  152 (312)
                      ++.++||++|+|||+|++||+||++|+.
T Consensus       317 ~~~~~LDgkytVFG~VveGmdVVdkI~~  344 (369)
T 3rfy_A          317 SNSNILDGRYAVFGYVTDNEDFLADLKV  344 (369)
T ss_dssp             CCCSSSCSCEEEEEEEEESTTGGGGCCT
T ss_pred             CCCcccCCCeeEEEEEecCHHHHHHHhC
Confidence            4689999999999999999999999987

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}

Probab=99.71  E-value=6.8e-17  Score=130.82  Aligned_cols=107  Identities=30%  Similarity=0.438  Sum_probs=95.6

Q ss_pred             hhhhhhhhhhhHhhhhhHHhhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHcCCHHHHH
Q 021445          205 LSWWMNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGAL  284 (312)
Q Consensus       205 ~~~~~~~~~~~k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai  284 (312)
                      .++.++.+..+++.|+.+|+.|+|++|+..|++||.++........+..++...+.+....+|.|+|.||+++|+|++|+
T Consensus         4 ~~e~~~~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~   83 (162)
T 3rkv_A            4 EDDKLKSVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAE   83 (162)
T ss_dssp             ----CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence            35677899999999999999999999999999999998776666666666677788999999999999999999999999


Q ss_pred             HHHHHHHHcCCCchHHHHHHHHHhhhh
Q 021445          285 LDTEFAMRDGDDNVKALFRQGQVSIIL  311 (312)
Q Consensus       285 ~~~~~al~l~p~~~Ka~~rrg~a~~~L  311 (312)
                      .+|++||+++|.++++|+++|.+|..+
T Consensus        84 ~~~~~al~~~p~~~~a~~~~g~~~~~~  110 (162)
T 3rkv_A           84 ETSSEVLKREETNEKALFRRAKARIAA  110 (162)
T ss_dssp             HHHHHHHHHSTTCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHhcCCcchHHHHHHHHHHHHH
Confidence            999999999999999999999999876

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8

Probab=99.62  E-value=4e-15  Score=120.20  Aligned_cols=97  Identities=11%  Similarity=0.024  Sum_probs=83.9

Q ss_pred             hhhhhhhHhhhhhHHhhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHcCCHHHHHHHHH
Q 021445          209 MNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTE  288 (312)
Q Consensus       209 ~~~~~~~k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~  288 (312)
                      ...+..+++.|+.+|+.|+|++|+.+|++||++....+..      +.....+....+|+|+|.|+.++|+|++|+.+|+
T Consensus         8 ~~~a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~------~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~   81 (159)
T 2hr2_A            8 VVGAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPE------EAFDHAGFDAFCHAGLAEALAGLRSFDEALHSAD   81 (159)
T ss_dssp             HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTT------SCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcch------hhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence            5578889999999999999999999999999975443221      1222556677799999999999999999999999


Q ss_pred             HHHHc-------CCCchHHH----HHHHHHhhhh
Q 021445          289 FAMRD-------GDDNVKAL----FRQGQVSIIL  311 (312)
Q Consensus       289 ~al~l-------~p~~~Ka~----~rrg~a~~~L  311 (312)
                      +||++       +|++++||    |+||.||..|
T Consensus        82 kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~l  115 (159)
T 2hr2_A           82 KALHYFNRRGELNQDEGKLWISAVYSRALALDGL  115 (159)
T ss_dssp             HHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHhhhccccCCCchHHHHHHHHHhHHHHHHHC
Confidence            99999       99999999    9999999876

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=99.61  E-value=2.1e-15  Score=117.55  Aligned_cols=83  Identities=28%  Similarity=0.450  Sum_probs=78.8

Q ss_pred             hhhhhHhhhhhHHhhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHcCCHHHHHHHHHHH
Q 021445          211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA  290 (312)
Q Consensus       211 ~~~~~k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~a  290 (312)
                      .++.++++|+.+|++|+|++|+..|++||+                  ++|....+|.|+|.||+++|++++|+.++++|
T Consensus        12 ~a~~~~~~G~~~~~~g~~~~A~~~~~~al~------------------~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a   73 (126)
T 4gco_A           12 LAQEEKNKGNEYFKKGDYPTAMRHYNEAVK------------------RDPENAILYSNRAACLTKLMEFQRALDDCDTC   73 (126)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH------------------HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH------------------hCCCCHHHHHHHhhHHHhhccHHHHHHHHHHH
Confidence            578899999999999999999999999999                  66777889999999999999999999999999


Q ss_pred             HHcCCCchHHHHHHHHHhhhh
Q 021445          291 MRDGDDNVKALFRQGQVSIIL  311 (312)
Q Consensus       291 l~l~p~~~Ka~~rrg~a~~~L  311 (312)
                      |+++|+++++|+++|.+|..+
T Consensus        74 l~~~p~~~~a~~~lg~~~~~~   94 (126)
T 4gco_A           74 IRLDSKFIKGYIRKAACLVAM   94 (126)
T ss_dssp             HHHCTTCHHHHHHHHHHHHHT
T ss_pred             HHhhhhhhHHHHHHHHHHHHC
Confidence            999999999999999999876

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}

Probab=99.50  E-value=2.6e-14  Score=111.43  Aligned_cols=85  Identities=25%  Similarity=0.314  Sum_probs=76.0

Q ss_pred             hhhhhhhHhhhhhHHhhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHcCCHHHHHHHHH
Q 021445          209 MNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTE  288 (312)
Q Consensus       209 ~~~~~~~k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~  288 (312)
                      .+.+..+++.|+.+|++|+|++|+..|++||+                  ++|....+|.|+|.||+++|+|++|+++|+
T Consensus         5 ~d~A~a~~~lG~~~~~~~~~~~A~~~y~~Al~------------------~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~   66 (127)
T 4gcn_A            5 TDAAIAEKDLGNAAYKQKDFEKAHVHYDKAIE------------------LDPSNITFYNNKAAVYFEEKKFAECVQFCE   66 (127)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH------------------HCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH------------------hCCCCHHHHHhHHHHHHHhhhHHHHHHHHH
Confidence            45778899999999999999999999999999                  566678899999999999999999999999


Q ss_pred             HHHHcCCCch-------HHHHHHHHHhhhh
Q 021445          289 FAMRDGDDNV-------KALFRQGQVSIIL  311 (312)
Q Consensus       289 ~al~l~p~~~-------Ka~~rrg~a~~~L  311 (312)
                      +||+++|++.       ++|+++|.++..+
T Consensus        67 ~al~~~~~~~~~~~~~a~~~~~lg~~~~~~   96 (127)
T 4gcn_A           67 KAVEVGRETRADYKLIAKAMSRAGNAFQKQ   96 (127)
T ss_dssp             HHHHHHHHTTCCHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHhCcccchhhHHHHHHHHHHHHHHHHc
Confidence            9999998764       5788888877654

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A

Probab=99.40  E-value=1.6e-12  Score=123.06  Aligned_cols=105  Identities=23%  Similarity=0.337  Sum_probs=91.0

Q ss_pred             ChhhhhhhhhhhHhhhhhHHhhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHcCCHHHH
Q 021445          204 ELSWWMNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGA  283 (312)
Q Consensus       204 ~~~~~~~~~~~~k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~A  283 (312)
                      ..+.....+..++++|+.+++.++|++|+..|++||++....   ....+++...+.+....+|+|+|.||+++++|++|
T Consensus       260 ~~~~~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~---~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A  336 (457)
T 1kt0_A          260 DTKEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEME---YGLSEKESKASESFLLAAFLNLAMCYLKLREYTKA  336 (457)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTC---CSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             CHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhccc---ccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHH
Confidence            344455678889999999999999999999999999975442   12344556668888899999999999999999999


Q ss_pred             HHHHHHHHHcCCCchHHHHHHHHHhhhh
Q 021445          284 LLDTEFAMRDGDDNVKALFRQGQVSIIL  311 (312)
Q Consensus       284 i~~~~~al~l~p~~~Ka~~rrg~a~~~L  311 (312)
                      +.+|++||+++|+++++||++|.||..+
T Consensus       337 ~~~~~~al~~~p~~~~a~~~~g~a~~~~  364 (457)
T 1kt0_A          337 VECCDKALGLDSANEKGLYRRGEAQLLM  364 (457)
T ss_dssp             HHHHHHHHHHSTTCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHhcCCccHHHHHHHHHHHHHc
Confidence            9999999999999999999999999876

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}

Probab=99.40  E-value=8.1e-13  Score=101.76  Aligned_cols=83  Identities=20%  Similarity=0.356  Sum_probs=77.5

Q ss_pred             hhhhhHhhhhhHHhhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHcCCHHHHHHHHHHH
Q 021445          211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA  290 (312)
Q Consensus       211 ~~~~~k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~a  290 (312)
                      .+..+.+.|+.+++.|+|++|+..|+++|+                  +.|....+|.|+|.|++++|+|++|+.+++++
T Consensus         3 ~a~~~~~~g~~~~~~~~~~~A~~~~~~al~------------------~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a   64 (126)
T 3upv_A            3 KAEEARLEGKEYFTKSDWPNAVKAYTEMIK------------------RAPEDARGYSNRAAALAKLMSFPEAIADCNKA   64 (126)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH------------------HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHhcCHHHHHHHHHHHHH------------------hCCCChHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence            467899999999999999999999999999                  45566789999999999999999999999999


Q ss_pred             HHcCCCchHHHHHHHHHhhhh
Q 021445          291 MRDGDDNVKALFRQGQVSIIL  311 (312)
Q Consensus       291 l~l~p~~~Ka~~rrg~a~~~L  311 (312)
                      ++++|+++++|+++|.++..+
T Consensus        65 l~~~p~~~~~~~~lg~~~~~~   85 (126)
T 3upv_A           65 IEKDPNFVRAYIRKATAQIAV   85 (126)
T ss_dssp             HHHCTTCHHHHHHHHHHHHHT
T ss_pred             HHhCCCcHHHHHHHHHHHHHH
Confidence            999999999999999999865

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}

Probab=99.35  E-value=2.8e-12  Score=95.77  Aligned_cols=84  Identities=18%  Similarity=0.251  Sum_probs=76.8

Q ss_pred             hhhhhhHhhhhhHHhhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHcCCHHHHHHHHHH
Q 021445          210 NAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEF  289 (312)
Q Consensus       210 ~~~~~~k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~  289 (312)
                      ..+..+...|+.+++.|+|++|+..|++|++                  +.|....++.|+|.|++++|+|++|+.++++
T Consensus         2 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~------------------~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~   63 (111)
T 2l6j_A            2 SQFEKQKEQGNSLFKQGLYREAVHCYDQLIT------------------AQPQNPVGYSNKAMALIKLGEYTQAIQMCQQ   63 (111)
T ss_dssp             THHHHHHHHHHHHHTTTCHHHHHHHHHHHHH------------------HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHcCCHHHHHHHHHHHHh------------------cCCCCHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence            3567789999999999999999999999999                  4455577899999999999999999999999


Q ss_pred             HHHcCCCc------hHHHHHHHHHhhhh
Q 021445          290 AMRDGDDN------VKALFRQGQVSIIL  311 (312)
Q Consensus       290 al~l~p~~------~Ka~~rrg~a~~~L  311 (312)
                      +++++|++      .++++++|.++..+
T Consensus        64 al~~~p~~~~~~~~~~~~~~~~~~~~~~   91 (111)
T 2l6j_A           64 GLRYTSTAEHVAIRSKLQYRLELAQGAV   91 (111)
T ss_dssp             HHTSCSSTTSHHHHHHHHHHHHHHHHHH
T ss_pred             HHHhCCCccHHHHHHHHHHHHHHHHHHH
Confidence            99999999      99999999998764

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A

Probab=99.33  E-value=3.5e-12  Score=102.64  Aligned_cols=83  Identities=17%  Similarity=0.137  Sum_probs=78.5

Q ss_pred             hhhhhHhhhhhHHhhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHcCCHHHHHHHHHHH
Q 021445          211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA  290 (312)
Q Consensus       211 ~~~~~k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~a  290 (312)
                      .+..+...|..+++.|+|++|+..|++++.                  ++|....+|.|+|.|+.++|+|++|+..+++|
T Consensus        35 ~~~~~~~lg~~~~~~g~~~eA~~~~~~al~------------------~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~a   96 (151)
T 3gyz_A           35 MMDDIYSYAYDFYNKGRIEEAEVFFRFLCI------------------YDFYNVDYIMGLAAIYQIKEQFQQAADLYAVA   96 (151)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH------------------HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH------------------hCCCCHHHHHHHHHHHHHHccHHHHHHHHHHH
Confidence            466789999999999999999999999999                  67778889999999999999999999999999


Q ss_pred             HHcCCCchHHHHHHHHHhhhh
Q 021445          291 MRDGDDNVKALFRQGQVSIIL  311 (312)
Q Consensus       291 l~l~p~~~Ka~~rrg~a~~~L  311 (312)
                      ++++|+++.+|+.+|.+|..+
T Consensus        97 l~l~P~~~~~~~~lg~~~~~l  117 (151)
T 3gyz_A           97 FALGKNDYTPVFHTGQCQLRL  117 (151)
T ss_dssp             HHHSSSCCHHHHHHHHHHHHT
T ss_pred             HhhCCCCcHHHHHHHHHHHHc
Confidence            999999999999999999875

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A

Probab=99.31  E-value=1.5e-11  Score=111.63  Aligned_cols=104  Identities=21%  Similarity=0.316  Sum_probs=90.0

Q ss_pred             hhhhhhhhhhhHhhhhhHHhhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHcCCHHHHH
Q 021445          205 LSWWMNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGAL  284 (312)
Q Consensus       205 ~~~~~~~~~~~k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai  284 (312)
                      .+.....+..+...|+.+++.|+|++|+..|++||++....   .....+....+.+....+|.|+|.||+++++|++|+
T Consensus       140 ~~~~p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~---~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~  216 (336)
T 1p5q_A          140 SEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYE---SSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAI  216 (336)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTC---CCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhcc---ccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence            34445578889999999999999999999999999975432   223345566788888999999999999999999999


Q ss_pred             HHHHHHHHcCCCchHHHHHHHHHhhhh
Q 021445          285 LDTEFAMRDGDDNVKALFRQGQVSIIL  311 (312)
Q Consensus       285 ~~~~~al~l~p~~~Ka~~rrg~a~~~L  311 (312)
                      .+|++||+++|+++++|+++|.+|..+
T Consensus       217 ~~~~~al~~~p~~~~a~~~lg~~~~~~  243 (336)
T 1p5q_A          217 ESCNKALELDSNNEKGLSRRGEAHLAV  243 (336)
T ss_dssp             HHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHhCCCcHHHHHHHHHHHHHC
Confidence            999999999999999999999999875

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}

Probab=99.29  E-value=5.6e-12  Score=114.63  Aligned_cols=110  Identities=23%  Similarity=0.321  Sum_probs=88.0

Q ss_pred             CCCChhhhhhhhhhhHhhhhhHHhhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHcCCH
Q 021445          201 TPNELSWWMNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDL  280 (312)
Q Consensus       201 ~~~~~~~~~~~~~~~k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~  280 (312)
                      -....++.++.+..++..|+.+++.++|++|+..|++||.+........ ...........+...+|+|+|.||+++++|
T Consensus       168 ~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~-~~~~~~~~~~~l~~~~~~nla~~~~~~g~~  246 (338)
T 2if4_A          168 SDMTVEERIGAADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQ-LYGKYQDMALAVKNPCHLNIAACLIKLKRY  246 (338)
T ss_dssp             TBCCHHHHHHHHHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHHHT-CCHHHHHHHHHHHTHHHHHHHHHHHTTTCC
T ss_pred             ccCCHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccchhhh-hcccHHHHHHHHHHHHHHHHHHHHHHcCCH
Confidence            3455677888999999999999999999999999999999653321100 011111123344456999999999999999


Q ss_pred             HHHHHHHHHHHHcCCCchHHHHHHHHHhhhh
Q 021445          281 KGALLDTEFAMRDGDDNVKALFRQGQVSIIL  311 (312)
Q Consensus       281 ~~Ai~~~~~al~l~p~~~Ka~~rrg~a~~~L  311 (312)
                      ++|+.+|++||+++|+++++|+++|.+|..+
T Consensus       247 ~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~  277 (338)
T 2if4_A          247 DEAIGHCNIVLTEEEKNPKALFRRGKAKAEL  277 (338)
T ss_dssp             HHHHHHHHHHHHHCTTCHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence            9999999999999999999999999999875

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}

Probab=99.29  E-value=9.4e-12  Score=100.43  Aligned_cols=84  Identities=24%  Similarity=0.276  Sum_probs=78.1

Q ss_pred             hhhhhhHhhhhhHHhhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHcCCHHHHHHHHHH
Q 021445          210 NAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEF  289 (312)
Q Consensus       210 ~~~~~~k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~  289 (312)
                      ..+..+...|+.+++.|+|++|+..|+++|+                  +.|....+|.|+|.||+++++|++|+.++++
T Consensus         9 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~------------------~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~   70 (164)
T 3sz7_A            9 PESDKLKSEGNAAMARKEYSKAIDLYTQALS------------------IAPANPIYLSNRAAAYSASGQHEKAAEDAEL   70 (164)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH------------------HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH------------------hCCcCHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence            4678899999999999999999999999999                  5566678999999999999999999999999


Q ss_pred             HHHcCCCchHHHHHHHHHhhhh
Q 021445          290 AMRDGDDNVKALFRQGQVSIIL  311 (312)
Q Consensus       290 al~l~p~~~Ka~~rrg~a~~~L  311 (312)
                      +++++|+++.+|+++|.+|..+
T Consensus        71 al~~~p~~~~~~~~lg~~~~~~   92 (164)
T 3sz7_A           71 ATVVDPKYSKAWSRLGLARFDM   92 (164)
T ss_dssp             HHHHCTTCHHHHHHHHHHHHHT
T ss_pred             HHHhCCCCHHHHHHHHHHHHHc
Confidence            9999999999999999999865

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1

Probab=99.23  E-value=2.2e-11  Score=101.41  Aligned_cols=120  Identities=22%  Similarity=0.186  Sum_probs=90.0

Q ss_pred             CCCCCCCCCCCCCCCCCChhhhhhhhhhhHhhhhhHHhhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHH
Q 021445          187 DGDSYPDWPADLDQTPNELSWWMNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQI  266 (312)
Q Consensus       187 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~~k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~  266 (312)
                      ....|+...+.++   .+.++..+.+..++..|+.+++.|+|++|+..|.+|+.+....+...  ..............+
T Consensus        16 ~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~--~~~~~~~~~~~~~~~   90 (198)
T 2fbn_A           16 NLYFQGAKKSIYD---YTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWD--DQILLDKKKNIEISC   90 (198)
T ss_dssp             ------CCCSGGG---CCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCC--CHHHHHHHHHHHHHH
T ss_pred             hhhhccccCchhh---CCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccc--hhhHHHHHHHHHHHH
Confidence            3444555555443   45677788899999999999999999999999999999643321000  000111233445689


Q ss_pred             HhHHHHHHHHcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHhhhh
Q 021445          267 FTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQVSIIL  311 (312)
Q Consensus       267 ~~N~a~~~~kl~~~~~Ai~~~~~al~l~p~~~Ka~~rrg~a~~~L  311 (312)
                      +.|+|.||+++++|++|+.+|+++++++|.+.++|+++|.+|..+
T Consensus        91 ~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~  135 (198)
T 2fbn_A           91 NLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYF  135 (198)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHc
Confidence            999999999999999999999999999999999999999999865

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*

Probab=99.17  E-value=8.8e-11  Score=93.80  Aligned_cols=82  Identities=6%  Similarity=-0.033  Sum_probs=75.5

Q ss_pred             hhhhHhhhhhHHhhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHcCCHHHHHHHHHHHH
Q 021445          212 VDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAM  291 (312)
Q Consensus       212 ~~~~k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al  291 (312)
                      ...+...|+.+++.|+|++|+..|+++|+                  ++|....+|.++|.||.++|++++|+.++.+++
T Consensus        31 ~~~~~~la~~y~~~~~~~~A~~~~~~al~------------------~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al   92 (150)
T 4ga2_A           31 SIKGFYFAKLYYEAKEYDLAKKYICTYIN------------------VQERDPKAHRFLGLLYELEENTDKAVECYRRSV   92 (150)
T ss_dssp             HTTHHHHHHHHHHTTCHHHHHHHHHHHHH------------------HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHH------------------hCCCCHHHHHHHHHHHHHcCchHHHHHHHHHHH
Confidence            44457889999999999999999999999                  667778899999999999999999999999999


Q ss_pred             HcCCCchHHHHHHHHHhhhh
Q 021445          292 RDGDDNVKALFRQGQVSIIL  311 (312)
Q Consensus       292 ~l~p~~~Ka~~rrg~a~~~L  311 (312)
                      +++|+++.+|+..|.+|..+
T Consensus        93 ~~~p~~~~~~~~la~~~~~~  112 (150)
T 4ga2_A           93 ELNPTQKDLVLKIAELLCKN  112 (150)
T ss_dssp             HHCTTCHHHHHHHHHHHHHH
T ss_pred             HhCCCCHHHHHHHHHHHHHc
Confidence            99999999999999998764

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*

Probab=99.17  E-value=8.4e-11  Score=93.81  Aligned_cols=83  Identities=13%  Similarity=0.236  Sum_probs=76.9

Q ss_pred             hhhhhHhhhhhHHhhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHcCCHHHHHHHHHHH
Q 021445          211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA  290 (312)
Q Consensus       211 ~~~~~k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~a  290 (312)
                      .+..+...|..+++.|+|++|+..|++++.                  +.|....++.++|.|+.++|+|++|+..++++
T Consensus        20 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~------------------~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a   81 (148)
T 2vgx_A           20 TLEQLYSLAFNQYQSGXYEDAHXVFQALCV------------------LDHYDSRFFLGLGACRQAMGQYDLAIHSYSYG   81 (148)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH------------------HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcCChHHHHHHHHHHHH------------------cCcccHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence            456688999999999999999999999999                  56667889999999999999999999999999


Q ss_pred             HHcCCCchHHHHHHHHHhhhh
Q 021445          291 MRDGDDNVKALFRQGQVSIIL  311 (312)
Q Consensus       291 l~l~p~~~Ka~~rrg~a~~~L  311 (312)
                      +.++|+++.+|+.+|.+|..+
T Consensus        82 l~l~p~~~~~~~~lg~~~~~~  102 (148)
T 2vgx_A           82 AVMDIXEPRFPFHAAECLLQX  102 (148)
T ss_dssp             HHHSTTCTHHHHHHHHHHHHT
T ss_pred             HhcCCCCchHHHHHHHHHHHc
Confidence            999999999999999999765

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*

Probab=99.16  E-value=1.1e-10  Score=90.45  Aligned_cols=83  Identities=27%  Similarity=0.355  Sum_probs=76.9

Q ss_pred             hhhhhHhhhhhHHhhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHcCCHHHHHHHHHHH
Q 021445          211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA  290 (312)
Q Consensus       211 ~~~~~k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~a  290 (312)
                      .+..+...|..+++.|+|++|+..|++++.                  +.|....++.|+|.|++++++|++|+.++.++
T Consensus         8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~------------------~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a   69 (137)
T 3q49_B            8 SAQELKEQGNRLFVGRKYPEAAACYGRAIT------------------RNPLVAVYYTNRALCYLKMQQPEQALADCRRA   69 (137)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH------------------HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHhCcHHHHHHHHHHHHh------------------hCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence            467789999999999999999999999999                  44556779999999999999999999999999


Q ss_pred             HHcCCCchHHHHHHHHHhhhh
Q 021445          291 MRDGDDNVKALFRQGQVSIIL  311 (312)
Q Consensus       291 l~l~p~~~Ka~~rrg~a~~~L  311 (312)
                      ++++|.++.+|+.+|.++..+
T Consensus        70 l~~~p~~~~~~~~l~~~~~~~   90 (137)
T 3q49_B           70 LELDGQSVKAHFFLGQCQLEM   90 (137)
T ss_dssp             HHHCTTCHHHHHHHHHHHHHT
T ss_pred             HHhCchhHHHHHHHHHHHHHH
Confidence            999999999999999999765

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=99.14  E-value=1.2e-10  Score=90.41  Aligned_cols=79  Identities=15%  Similarity=0.064  Sum_probs=73.6

Q ss_pred             hhhhHhhhhhHHhhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHcCCHHHHHHHHHHHH
Q 021445          212 VDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAM  291 (312)
Q Consensus       212 ~~~~k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al  291 (312)
                      +..+...|..+++.|+|++|+..|++||+                  ++|....+|.|+|.|+.++|+|++|++++.++|
T Consensus        47 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~------------------~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al  108 (126)
T 4gco_A           47 AILYSNRAACLTKLMEFQRALDDCDTCIR------------------LDSKFIKGYIRKAACLVAMREWSKAQRAYEDAL  108 (126)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHH------------------HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHhhHHHhhccHHHHHHHHHHHHH------------------hhhhhhHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence            45678899999999999999999999999                  667778899999999999999999999999999


Q ss_pred             HcCCCchHHHHHHHHHh
Q 021445          292 RDGDDNVKALFRQGQVS  308 (312)
Q Consensus       292 ~l~p~~~Ka~~rrg~a~  308 (312)
                      +++|++..++...+.|+
T Consensus       109 ~l~P~~~~a~~~l~~~l  125 (126)
T 4gco_A          109 QVDPSNEEAREGVRNCL  125 (126)
T ss_dssp             HHCTTCHHHHHHHHHHC
T ss_pred             HHCcCCHHHHHHHHHhc
Confidence            99999999999988875

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A

Probab=99.14  E-value=1.5e-10  Score=91.27  Aligned_cols=83  Identities=16%  Similarity=0.288  Sum_probs=76.9

Q ss_pred             hhhhhHhhhhhHHhhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHcCCHHHHHHHHHHH
Q 021445          211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA  290 (312)
Q Consensus       211 ~~~~~k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~a  290 (312)
                      .+..+...|..+++.|+|++|+..|++++.                  ..|....+|.++|.|+.++|+|++|+..++++
T Consensus        17 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~------------------~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a   78 (142)
T 2xcb_A           17 TLEQLYALGFNQYQAGKWDDAQKIFQALCM------------------LDHYDARYFLGLGACRQSLGLYEQALQSYSYG   78 (142)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH------------------HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHccHHHHHHHHHHHHH------------------hCCccHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence            456688999999999999999999999999                  56667889999999999999999999999999


Q ss_pred             HHcCCCchHHHHHHHHHhhhh
Q 021445          291 MRDGDDNVKALFRQGQVSIIL  311 (312)
Q Consensus       291 l~l~p~~~Ka~~rrg~a~~~L  311 (312)
                      +.++|+++.+++.+|.+|..+
T Consensus        79 l~~~p~~~~~~~~lg~~~~~~   99 (142)
T 2xcb_A           79 ALMDINEPRFPFHAAECHLQL   99 (142)
T ss_dssp             HHHCTTCTHHHHHHHHHHHHT
T ss_pred             HhcCCCCcHHHHHHHHHHHHc
Confidence            999999999999999999765

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1

Probab=99.12  E-value=2.2e-10  Score=88.06  Aligned_cols=81  Identities=6%  Similarity=-0.063  Sum_probs=75.6

Q ss_pred             hhhHhhhhhHHhhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHcCCHHHHHHHHHHHHH
Q 021445          213 DSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMR  292 (312)
Q Consensus       213 ~~~k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~  292 (312)
                      ..+...|..+++.|+|++|+..|.++++                  +.|....++.++|.++.++|++++|+..+.+|++
T Consensus        18 ~~~~~~g~~~~~~g~~~~A~~~~~~al~------------------~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~   79 (121)
T 1hxi_A           18 ENPMEEGLSMLKLANLAEAALAFEAVCQ------------------KEPEREEAWRSLGLTQAENEKDGLAIIALNHARM   79 (121)
T ss_dssp             SCHHHHHHHHHHTTCHHHHHHHHHHHHH------------------HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHcCCHHHHHHHHHHHHH------------------HCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            4578899999999999999999999999                  6677788999999999999999999999999999


Q ss_pred             cCCCchHHHHHHHHHhhhh
Q 021445          293 DGDDNVKALFRQGQVSIIL  311 (312)
Q Consensus       293 l~p~~~Ka~~rrg~a~~~L  311 (312)
                      ++|++..+++.+|.+|..+
T Consensus        80 l~P~~~~~~~~la~~~~~~   98 (121)
T 1hxi_A           80 LDPKDIAVHAALAVSHTNE   98 (121)
T ss_dssp             HCTTCHHHHHHHHHHHHHH
T ss_pred             hCCCCHHHHHHHHHHHHHc
Confidence            9999999999999998754

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=99.10  E-value=1.5e-10  Score=102.24  Aligned_cols=83  Identities=27%  Similarity=0.355  Sum_probs=77.0

Q ss_pred             hhhhhHhhhhhHHhhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHcCCHHHHHHHHHHH
Q 021445          211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA  290 (312)
Q Consensus       211 ~~~~~k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~a  290 (312)
                      .+..++..|+.+++.|+|++|+..|++|+.                  +.|....+|.|+|.||+++|+|++|+.++++|
T Consensus         3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~------------------~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a   64 (281)
T 2c2l_A            3 SAQELKEQGNRLFVGRKYPEAAACYGRAIT------------------RNPLVAVYYTNRALCYLKMQQPEQALADCRRA   64 (281)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH------------------HCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHH------------------hCCccHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence            356789999999999999999999999999                  45556789999999999999999999999999


Q ss_pred             HHcCCCchHHHHHHHHHhhhh
Q 021445          291 MRDGDDNVKALFRQGQVSIIL  311 (312)
Q Consensus       291 l~l~p~~~Ka~~rrg~a~~~L  311 (312)
                      ++++|++.++++++|.+|..+
T Consensus        65 l~~~p~~~~~~~~lg~~~~~~   85 (281)
T 2c2l_A           65 LELDGQSVKAHFFLGQCQLEM   85 (281)
T ss_dssp             TTSCTTCHHHHHHHHHHHHHT
T ss_pred             HHhCCCCHHHHHHHHHHHHHc
Confidence            999999999999999999865

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A

Probab=99.10  E-value=4e-10  Score=80.71  Aligned_cols=83  Identities=25%  Similarity=0.315  Sum_probs=74.9

Q ss_pred             hhhhhHhhhhhHHhhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHcCCHHHHHHHHHHH
Q 021445          211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA  290 (312)
Q Consensus       211 ~~~~~k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~a  290 (312)
                      .+..+...|..+++.++|++|+..|.++++                  +.|....++.++|.++.+++++++|+..+.++
T Consensus         8 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~------------------~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a   69 (91)
T 1na3_A            8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALE------------------LDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKA   69 (91)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH------------------HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHccCHHHHHHHHHHHHh------------------cCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence            356678899999999999999999999998                  33445668999999999999999999999999


Q ss_pred             HHcCCCchHHHHHHHHHhhhh
Q 021445          291 MRDGDDNVKALFRQGQVSIIL  311 (312)
Q Consensus       291 l~l~p~~~Ka~~rrg~a~~~L  311 (312)
                      ++++|.+..+++.+|.++..+
T Consensus        70 ~~~~p~~~~~~~~l~~~~~~~   90 (91)
T 1na3_A           70 LELDPNNAEAKQNLGNAKQKQ   90 (91)
T ss_dssp             HHHCTTCHHHHHHHHHHHHHH
T ss_pred             HhcCCCCHHHHHHHHHHHHhc
Confidence            999999999999999998764

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1

Probab=99.05  E-value=7.5e-10  Score=82.50  Aligned_cols=84  Identities=25%  Similarity=0.257  Sum_probs=71.2

Q ss_pred             hhhhhhHhhhhhHHhhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHcCCHHHHHHHHHH
Q 021445          210 NAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEF  289 (312)
Q Consensus       210 ~~~~~~k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~  289 (312)
                      +.+..+...|..++..|+|++|+..|.+++.                  ..|....++.++|.+++++++|++|+..+.+
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~------------------~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~   63 (118)
T 1elw_A            2 EQVNELKEKGNKALSVGNIDDALQCYSEAIK------------------LDPHNHVLYSNRSAAYAKKGDYQKAYEDGCK   63 (118)
T ss_dssp             CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH------------------HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHcccHHHHHHHHHHHHH------------------HCCCcHHHHHHHHHHHHhhccHHHHHHHHHH
Confidence            3567788999999999999999999999998                  3344466888899999999999999999999


Q ss_pred             HHHcCCCchHHHHHHHHHhhhh
Q 021445          290 AMRDGDDNVKALFRQGQVSIIL  311 (312)
Q Consensus       290 al~l~p~~~Ka~~rrg~a~~~L  311 (312)
                      +++++|.+..+++.+|.++..+
T Consensus        64 ~~~~~~~~~~~~~~~a~~~~~~   85 (118)
T 1elw_A           64 TVDLKPDWGKGYSRKAAALEFL   85 (118)
T ss_dssp             HHHHCTTCHHHHHHHHHHHHHT
T ss_pred             HHHhCcccHHHHHHHHHHHHHH
Confidence            9999999999999988888654

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A

Probab=99.04  E-value=8.7e-10  Score=87.73  Aligned_cols=89  Identities=21%  Similarity=0.312  Sum_probs=77.3

Q ss_pred             hhhhhhhhhhhHhhhhhHHhhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHcCCHHHHH
Q 021445          205 LSWWMNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGAL  284 (312)
Q Consensus       205 ~~~~~~~~~~~k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai  284 (312)
                      .....+.+..+...|..++..|+|++|+..|.+++.                  ..|....++.++|.|+.++++|++|+
T Consensus         6 ~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~------------------~~~~~~~~~~~~a~~~~~~~~~~~A~   67 (166)
T 1a17_A            6 ADGALKRAEELKTQANDYFKAKDYENAIKFYSQAIE------------------LNPSNAIYYGNRSLAYLRTECYGYAL   67 (166)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH------------------HSTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred             hhhHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH------------------hCCCChHHHHHHHHHHHHcCCHHHHH
Confidence            345667889999999999999999999999999999                  34445678889999999999999999


Q ss_pred             HHHHHHHHcCCCchHHHHHHHHHhhhh
Q 021445          285 LDTEFAMRDGDDNVKALFRQGQVSIIL  311 (312)
Q Consensus       285 ~~~~~al~l~p~~~Ka~~rrg~a~~~L  311 (312)
                      ..+.++++++|.+..+|+.+|.++..+
T Consensus        68 ~~~~~a~~~~~~~~~~~~~~a~~~~~~   94 (166)
T 1a17_A           68 GDATRAIELDKKYIKGYYRRAASNMAL   94 (166)
T ss_dssp             HHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHhCcccHHHHHHHHHHHHHh
Confidence            999999999999999999999888764

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}

Probab=99.03  E-value=1.3e-09  Score=91.64  Aligned_cols=83  Identities=13%  Similarity=0.128  Sum_probs=63.4

Q ss_pred             hhhhhHhhhhhHHhhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhH----------------HHHHH
Q 021445          211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTN----------------SSACK  274 (312)
Q Consensus       211 ~~~~~k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N----------------~a~~~  274 (312)
                      .+..+..+|..++..|+|++|+..|+++++                  +.|....++.+                +|.+|
T Consensus         3 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~------------------~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~   64 (208)
T 3urz_A            3 SVDEMLQKVSAAIEAGQNGQAVSYFRQTIA------------------LNIDRTEMYYWTNVDKNSEISSKLATELALAY   64 (208)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH------------------HCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHH------------------hCCCChHHHHHhhhcchhhhhHHHHHHHHHHH
Confidence            456788999999999999999999999998                  44444555555                77777


Q ss_pred             HHcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHhhhh
Q 021445          275 LKLGDLKGALLDTEFAMRDGDDNVKALFRQGQVSIIL  311 (312)
Q Consensus       275 ~kl~~~~~Ai~~~~~al~l~p~~~Ka~~rrg~a~~~L  311 (312)
                      .++|+|++|+..++++|+++|+++.+|+.+|.+|..+
T Consensus        65 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~  101 (208)
T 3urz_A           65 KKNRNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCR  101 (208)
T ss_dssp             HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred             HHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHc
Confidence            7777777777777777777777777777777776543

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.01  E-value=1.4e-09  Score=84.77  Aligned_cols=86  Identities=33%  Similarity=0.448  Sum_probs=75.8

Q ss_pred             hhhhhHhhhhhHHhhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHcCCHHHHHHHHHHH
Q 021445          211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA  290 (312)
Q Consensus       211 ~~~~~k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~a  290 (312)
                      .+..+...|..++..|+|++|+..|+++++...               -.+....++.++|.|++++++|++|+..++++
T Consensus        27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~---------------~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~   91 (148)
T 2dba_A           27 SVEQLRKEGNELFKCGDYGGALAAYTQALGLDA---------------TPQDQAVLHRNRAACHLKLEDYDKAETEASKA   91 (148)
T ss_dssp             CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCC---------------CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcc---------------cchHHHHHHHHHHHHHHHHccHHHHHHHHHHH
Confidence            567789999999999999999999999998311               01334779999999999999999999999999


Q ss_pred             HHcCCCchHHHHHHHHHhhhh
Q 021445          291 MRDGDDNVKALFRQGQVSIIL  311 (312)
Q Consensus       291 l~l~p~~~Ka~~rrg~a~~~L  311 (312)
                      ++++|.+..+|+.+|.++..+
T Consensus        92 ~~~~~~~~~~~~~~a~~~~~~  112 (148)
T 2dba_A           92 IEKDGGDVKALYRRSQALEKL  112 (148)
T ss_dssp             HHHTSCCHHHHHHHHHHHHHH
T ss_pred             HhhCccCHHHHHHHHHHHHHc
Confidence            999999999999999998765

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}

Probab=98.97  E-value=1.8e-09  Score=78.97  Aligned_cols=76  Identities=17%  Similarity=0.059  Sum_probs=66.6

Q ss_pred             hHhhhhhHHhhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHH-HHhHHHHHHHHcCCHHHHHHHHHHHHHc
Q 021445          215 IKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQ-IFTNSSACKLKLGDLKGALLDTEFAMRD  293 (312)
Q Consensus       215 ~k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~N~a~~~~kl~~~~~Ai~~~~~al~l  293 (312)
                      ..++|..+++.|+|++|+..|+++++                  ..|.... ++.++|.|++++|++++|+..+.+++++
T Consensus         3 ~~~~a~~~~~~~~~~~A~~~~~~al~------------------~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~   64 (99)
T 2kc7_A            3 QLKTIKELINQGDIENALQALEEFLQ------------------TEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIEL   64 (99)
T ss_dssp             THHHHHHHHHHTCHHHHHHHHHHHHH------------------HCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHH------------------HCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence            45789999999999999999999999                  4455566 9999999999999999999999999999


Q ss_pred             CCCchHHH--HHHHHHh
Q 021445          294 GDDNVKAL--FRQGQVS  308 (312)
Q Consensus       294 ~p~~~Ka~--~rrg~a~  308 (312)
                      +|++..++  ...+.++
T Consensus        65 ~p~~~~~~~~~~~~~a~   81 (99)
T 2kc7_A           65 NPDSPALQARKMVMDIL   81 (99)
T ss_dssp             CTTSTHHHHHHHHHHHH
T ss_pred             CCCcHHHHHHHHHHHHH
Confidence            99999988  4444444

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}

Probab=98.97  E-value=1.5e-09  Score=80.19  Aligned_cols=82  Identities=12%  Similarity=0.167  Sum_probs=73.7

Q ss_pred             hhhhHhhhhhHHhhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHcCCHHHHHHHHHHHH
Q 021445          212 VDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAM  291 (312)
Q Consensus       212 ~~~~k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al  291 (312)
                      +..+...|..++..|+|++|+..|.++++.                  .+....++.++|.++.++++|++|+..+++++
T Consensus         6 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~------------------~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~   67 (112)
T 2kck_A            6 PEEYYLEGVLQYDAGNYTESIDLFEKAIQL------------------DPEESKYWLMKGKALYNLERYEEAVDCYNYVI   67 (112)
T ss_dssp             TTGGGGHHHHHHSSCCHHHHHHHHHHHHHH------------------CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHHHHHHh------------------CcCCHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence            445778999999999999999999999993                  33345688999999999999999999999999


Q ss_pred             HcCCC--chHHHHHHHHHhhhh
Q 021445          292 RDGDD--NVKALFRQGQVSIIL  311 (312)
Q Consensus       292 ~l~p~--~~Ka~~rrg~a~~~L  311 (312)
                      +++|.  +..+++.+|.++..+
T Consensus        68 ~~~~~~~~~~~~~~l~~~~~~~   89 (112)
T 2kck_A           68 NVIEDEYNKDVWAAKADALRYI   89 (112)
T ss_dssp             HTSCCTTCHHHHHHHHHHHTTC
T ss_pred             HhCcccchHHHHHHHHHHHHHH
Confidence            99999  999999999999765

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}

Probab=98.96  E-value=1.8e-09  Score=90.78  Aligned_cols=76  Identities=18%  Similarity=0.159  Sum_probs=71.5

Q ss_pred             hhhhhHHhhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Q 021445          217 VFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDD  296 (312)
Q Consensus       217 ~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~l~p~  296 (312)
                      +.|..+++.|+|++|+..|+++|+                  +.|....++.++|.+++++|++++|+..++++|+++|+
T Consensus        59 ~lg~~~~~~g~~~~A~~~~~~al~------------------~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~  120 (208)
T 3urz_A           59 ELALAYKKNRNYDKAYLFYKELLQ------------------KAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEAD  120 (208)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHH------------------HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHH------------------HCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Confidence            389999999999999999999999                  66777889999999999999999999999999999999


Q ss_pred             chHHHHHHHHHhhh
Q 021445          297 NVKALFRQGQVSII  310 (312)
Q Consensus       297 ~~Ka~~rrg~a~~~  310 (312)
                      ++.+|+.+|.+|+.
T Consensus       121 ~~~a~~~lg~~~~~  134 (208)
T 3urz_A          121 NLAANIFLGNYYYL  134 (208)
T ss_dssp             CHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHH
Confidence            99999999998853

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}

Probab=98.95  E-value=1.2e-09  Score=83.40  Aligned_cols=82  Identities=26%  Similarity=0.375  Sum_probs=56.5

Q ss_pred             hhhhhHhhhhhHHhhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHcCCHHHHHHHHHHH
Q 021445          211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA  290 (312)
Q Consensus       211 ~~~~~k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~a  290 (312)
                      .+..+...|..++..|+|++|+..|.++++.                  .+....++.++|.++.+++++++|+..++++
T Consensus        15 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~------------------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a   76 (133)
T 2lni_A           15 LALMVKNKGNECFQKGDYPQAMKHYTEAIKR------------------NPKDAKLYSNRAACYTKLLEFQLALKDCEEC   76 (133)
T ss_dssp             HHHHHHHHHHHHHHTTCSHHHHHHHHHHHTT------------------CTTCHHHHHHHHHHHTTTTCHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc------------------CCCcHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence            5667888999999999999999999999873                  2222445566666666666666666666666


Q ss_pred             HHcCCCchHHHHHHHHHhhh
Q 021445          291 MRDGDDNVKALFRQGQVSII  310 (312)
Q Consensus       291 l~l~p~~~Ka~~rrg~a~~~  310 (312)
                      ++++|.+..+++.+|.++..
T Consensus        77 ~~~~~~~~~~~~~la~~~~~   96 (133)
T 2lni_A           77 IQLEPTFIKGYTRKAAALEA   96 (133)
T ss_dssp             HHHCTTCHHHHHHHHHHHHH
T ss_pred             HHhCCCchHHHHHHHHHHHH
Confidence            66666666666666666554

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*

Probab=98.93  E-value=1.4e-09  Score=86.70  Aligned_cols=76  Identities=12%  Similarity=-0.076  Sum_probs=68.3

Q ss_pred             hhhhHHhhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHcCCHHHHHHHHHHHHHcCCCc
Q 021445          218 FGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDN  297 (312)
Q Consensus       218 ~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~l~p~~  297 (312)
                      .|..+..+|++++|+..|++++.                  ..|.....+.++|.+|+++|+|++|++.++++|+++|++
T Consensus         3 LG~~~~~~~~~e~ai~~~~~a~~------------------~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~   64 (150)
T 4ga2_A            3 LGSMRRSKADVERYIASVQGSTP------------------SPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERD   64 (150)
T ss_dssp             ----CCCHHHHHHHHHHHHHHSC------------------SHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred             hHHHHHHcChHHHHHHHHHHhcc------------------cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Confidence            46777889999999999999999                  678888899999999999999999999999999999999


Q ss_pred             hHHHHHHHHHhhhh
Q 021445          298 VKALFRQGQVSIIL  311 (312)
Q Consensus       298 ~Ka~~rrg~a~~~L  311 (312)
                      +.+|+.+|.+|..+
T Consensus        65 ~~a~~~lg~~~~~~   78 (150)
T 4ga2_A           65 PKAHRFLGLLYELE   78 (150)
T ss_dssp             HHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHc
Confidence            99999999999865

>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*

Probab=98.92  E-value=1.7e-09  Score=107.78  Aligned_cols=100  Identities=18%  Similarity=0.148  Sum_probs=51.0

Q ss_pred             hhhhhHhhhhhHHhhhcHHHHHHHHHHHHHHhhhccc---------cCCCCch-------hhhHHHHHHHHHHhHHHHHH
Q 021445          211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWE---------KEGIDEG-------KSSSLRKTKSQIFTNSSACK  274 (312)
Q Consensus       211 ~~~~~k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~---------~~~~~~~-------~~~~~~~~~~~~~~N~a~~~  274 (312)
                      .++.+.+.|+.+.++|+|++|+..|++||++-.....         .....-+       ....++|....+|.|+|.++
T Consensus         8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~nLg~~l   87 (723)
T 4gyw_A            8 HADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTL   87 (723)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence            4556667777777777777777777777762100000         0000000       00113444455555555555


Q ss_pred             HHcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHhhh
Q 021445          275 LKLGDLKGALLDTEFAMRDGDDNVKALFRQGQVSII  310 (312)
Q Consensus       275 ~kl~~~~~Ai~~~~~al~l~p~~~Ka~~rrg~a~~~  310 (312)
                      .++|++++|++.+++||+++|+++.+|+.+|.+|..
T Consensus        88 ~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~  123 (723)
T 4gyw_A           88 KEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKD  123 (723)
T ss_dssp             HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence            555555555555555555555555555555555543

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1

Probab=98.92  E-value=5.4e-09  Score=79.10  Aligned_cols=84  Identities=29%  Similarity=0.337  Sum_probs=54.6

Q ss_pred             hhhhhhhHhhhhhHHhhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHcCCHHHHHHHHH
Q 021445          209 MNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTE  288 (312)
Q Consensus       209 ~~~~~~~k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~  288 (312)
                      ...+..+...|..++..++|++|+..|.+++..                  .|....++.++|.++.+++++++|+..+.
T Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~------------------~~~~~~~~~~~a~~~~~~~~~~~A~~~~~   70 (131)
T 2vyi_A            9 SAEAERLKTEGNEQMKVENFEAAVHFYGKAIEL------------------NPANAVYFCNRAAAYSKLGNYAGAVQDCE   70 (131)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------------------CTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             hhhhHHHHHHHHHHHHccCHHHHHHHHHHHHHc------------------CCCCHHHHHHHHHHHHHhhchHHHHHHHH
Confidence            345667788888888888888888888888873                  22224455566666666666666666666


Q ss_pred             HHHHcCCCchHHHHHHHHHhhh
Q 021445          289 FAMRDGDDNVKALFRQGQVSII  310 (312)
Q Consensus       289 ~al~l~p~~~Ka~~rrg~a~~~  310 (312)
                      ++++++|.+..+++.+|.++..
T Consensus        71 ~~~~~~~~~~~~~~~~~~~~~~   92 (131)
T 2vyi_A           71 RAICIDPAYSKAYGRMGLALSS   92 (131)
T ss_dssp             HHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHhcCccCHHHHHHHHHHHHH
Confidence            6666666666666666655543

>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}

Probab=98.92  E-value=3.1e-09  Score=89.87  Aligned_cols=81  Identities=19%  Similarity=0.263  Sum_probs=72.9

Q ss_pred             hhhHhhhhhHHhhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHH-HHHHHHhHHHHHHHHcCCHHHHHHHHHHHH
Q 021445          213 DSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRK-TKSQIFTNSSACKLKLGDLKGALLDTEFAM  291 (312)
Q Consensus       213 ~~~k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al  291 (312)
                      ..+...|..+++.|+|++|+..|+++++.                  .| ....++.|+|.|+.++|+|++|+.++.+++
T Consensus         8 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~------------------~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al   69 (228)
T 4i17_A            8 NQLKNEGNDALNAKNYAVAFEKYSEYLKL------------------TNNQDSVTAYNCGVCADNIKKYKEAADYFDIAI   69 (228)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHH------------------TTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHhc------------------cCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHH
Confidence            56889999999999999999999999994                  22 334688889999999999999999999999


Q ss_pred             HcCCCchHHHHHHHHHhhhh
Q 021445          292 RDGDDNVKALFRQGQVSIIL  311 (312)
Q Consensus       292 ~l~p~~~Ka~~rrg~a~~~L  311 (312)
                      +++|.+..+|+.+|.+|..+
T Consensus        70 ~~~p~~~~~~~~l~~~~~~~   89 (228)
T 4i17_A           70 KKNYNLANAYIGKSAAYRDM   89 (228)
T ss_dssp             HTTCSHHHHHHHHHHHHHHT
T ss_pred             HhCcchHHHHHHHHHHHHHc
Confidence            99999999999999999765

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3

Probab=98.91  E-value=1.4e-09  Score=103.53  Aligned_cols=84  Identities=23%  Similarity=0.352  Sum_probs=73.2

Q ss_pred             hhhhhhHhhhhhHHhhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHcCCHHHHHHHHHH
Q 021445          210 NAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEF  289 (312)
Q Consensus       210 ~~~~~~k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~  289 (312)
                      +.+..+...|+.+++.|+|++|+..|++|++                  +.|....+|.|+|.||+++++|++|++++++
T Consensus         4 ~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~------------------~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~   65 (477)
T 1wao_1            4 KRAEELKTQANDYFKAKDYENAIKFYSQAIE------------------LNPSNAIYYGNRSLAYLRTECYGYALGDATR   65 (477)
T ss_dssp             HHHTTSSSSSSSTTTTTCHHHHHHHHHHHHH------------------HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH------------------hCCccHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence            4577788899999999999999999999998                  4555677899999999999999999999999


Q ss_pred             HHHcCCCchHHHHHHHHHhhhh
Q 021445          290 AMRDGDDNVKALFRQGQVSIIL  311 (312)
Q Consensus       290 al~l~p~~~Ka~~rrg~a~~~L  311 (312)
                      |++++|.++++|+++|.+|..+
T Consensus        66 al~l~p~~~~~~~~lg~~~~~~   87 (477)
T 1wao_1           66 AIELDKKYIKGYYRRAASNMAL   87 (477)
T ss_dssp             HHHSCTTCHHHHHHHHHHHHHH
T ss_pred             HHHhCCCCHHHHHHHHHHHHHc
Confidence            9999999999999999988765

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}

Probab=98.91  E-value=2e-09  Score=81.76  Aligned_cols=70  Identities=14%  Similarity=0.012  Sum_probs=61.2

Q ss_pred             hhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHH---HHHHHHHHhHHHHHHHHcCCHHHHHHHHHHHHHcCCCchHH
Q 021445          224 KKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSL---RKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKA  300 (312)
Q Consensus       224 ~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~---~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~l~p~~~Ka  300 (312)
                      ..|+|++|+..|++||+                  +   .|....++.|+|.||+++|+|++|+..+.++++++|+++.+
T Consensus         2 ~~g~~~~A~~~~~~al~------------------~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~   63 (117)
T 3k9i_A            2 VLGLEAQAVPYYEKAIA------------------SGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQAL   63 (117)
T ss_dssp             -----CCCHHHHHHHHS------------------SCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred             CCCcHHHHHHHHHHHHH------------------cCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHH
Confidence            35889999999999999                  4   57788899999999999999999999999999999999999


Q ss_pred             HHHHHHHhhhh
Q 021445          301 LFRQGQVSIIL  311 (312)
Q Consensus       301 ~~rrg~a~~~L  311 (312)
                      ++.+|.++..+
T Consensus        64 ~~~l~~~~~~~   74 (117)
T 3k9i_A           64 RVFYAMVLYNL   74 (117)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHc
Confidence            99999999765

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}

Probab=98.89  E-value=4.1e-09  Score=80.49  Aligned_cols=84  Identities=8%  Similarity=-0.057  Sum_probs=71.0

Q ss_pred             hhhHhhhhhHHhhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHcCCHHHHHHHHHHHHH
Q 021445          213 DSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMR  292 (312)
Q Consensus       213 ~~~k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~  292 (312)
                      ..+...|..+++.|+|++|+..|.++++....               .+....++.++|.|++++|+|++|+..+.++++
T Consensus         3 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~---------------~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~   67 (129)
T 2xev_A            3 RTAYNVAFDALKNGKYDDASQLFLSFLELYPN---------------GVYTPNALYWLGESYYATRNFQLAEAQFRDLVS   67 (129)
T ss_dssp             CCHHHHHHHHHHTTCHHHHHHHHHHHHHHCSS---------------STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCC---------------CcccHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence            45678899999999999999999999983211               112236889999999999999999999999999


Q ss_pred             cCCCc---hHHHHHHHHHhhhh
Q 021445          293 DGDDN---VKALFRQGQVSIIL  311 (312)
Q Consensus       293 l~p~~---~Ka~~rrg~a~~~L  311 (312)
                      .+|++   +.+++.+|.++..+
T Consensus        68 ~~p~~~~~~~~~~~la~~~~~~   89 (129)
T 2xev_A           68 RYPTHDKAAGGLLKLGLSQYGE   89 (129)
T ss_dssp             HCTTSTTHHHHHHHHHHHHHHT
T ss_pred             HCCCCcccHHHHHHHHHHHHHc
Confidence            99999   88999999998764

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}

Probab=98.89  E-value=3.2e-09  Score=85.34  Aligned_cols=80  Identities=11%  Similarity=0.061  Sum_probs=73.2

Q ss_pred             hhhhHhhhhhHHhhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHcCCHHHHHHHHHHHH
Q 021445          212 VDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAM  291 (312)
Q Consensus       212 ~~~~k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al  291 (312)
                      +..+...|..+++.|+|++|+..|+++|+                  +.|....+|.|+|.||.++|+|++|+.++.+++
T Consensus        45 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~------------------~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al  106 (164)
T 3sz7_A           45 PIYLSNRAAAYSASGQHEKAAEDAELATV------------------VDPKYSKAWSRLGLARFDMADYKGAKEAYEKGI  106 (164)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHH------------------HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHH------------------hCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence            45578899999999999999999999999                  556668899999999999999999999999999


Q ss_pred             HcCCCchHHHHHHHHHhh
Q 021445          292 RDGDDNVKALFRQGQVSI  309 (312)
Q Consensus       292 ~l~p~~~Ka~~rrg~a~~  309 (312)
                      +++|++..+|++++.+..
T Consensus       107 ~~~p~~~~~~~~~~l~~~  124 (164)
T 3sz7_A          107 EAEGNGGSDAMKRGLETT  124 (164)
T ss_dssp             HHHSSSCCHHHHHHHHHH
T ss_pred             HhCCCchHHHHHHHHHHH
Confidence            999999999999988754

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A

Probab=98.88  E-value=3.4e-09  Score=80.40  Aligned_cols=83  Identities=31%  Similarity=0.362  Sum_probs=74.6

Q ss_pred             hhhhhHhhhhhHHhhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHcCCHHHHHHHHHHH
Q 021445          211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA  290 (312)
Q Consensus       211 ~~~~~k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~a  290 (312)
                      .+..+...|..++..|+|++|+..|.+++..                  .|....++.++|.++.++++|++|+..+.++
T Consensus         3 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~------------------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~   64 (131)
T 1elr_A            3 QALKEKELGNDAYKKKDFDTALKHYDKAKEL------------------DPTNMTYITNQAAVYFEKGDYNKCRELCEKA   64 (131)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------------------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc------------------CCccHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence            4667889999999999999999999999993                  3444678999999999999999999999999


Q ss_pred             HHcCCCc-------hHHHHHHHHHhhhh
Q 021445          291 MRDGDDN-------VKALFRQGQVSIIL  311 (312)
Q Consensus       291 l~l~p~~-------~Ka~~rrg~a~~~L  311 (312)
                      +.++|.+       ..+++.+|.++..+
T Consensus        65 ~~~~~~~~~~~~~~~~~~~~la~~~~~~   92 (131)
T 1elr_A           65 IEVGRENREDYRQIAKAYARIGNSYFKE   92 (131)
T ss_dssp             HHHHHHSTTCHHHHHHHHHHHHHHHHHT
T ss_pred             HhhccccchhHHHHHHHHHHHHHHHHHh
Confidence            9999887       99999999998765

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A

Probab=98.87  E-value=4e-09  Score=84.58  Aligned_cols=79  Identities=22%  Similarity=0.198  Sum_probs=70.1

Q ss_pred             hhhhHhhhhhHHhhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHcCCHHHHHHHHHHHH
Q 021445          212 VDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAM  291 (312)
Q Consensus       212 ~~~~k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al  291 (312)
                      +..+...|..+++.|+|++|+..|++|+.                  ++|....+|.|+|.||.++|++++|+..+++|+
T Consensus        70 ~~~~~~lg~~~~~~g~~~~Ai~~~~~al~------------------l~P~~~~~~~~lg~~~~~lg~~~eA~~~~~~al  131 (151)
T 3gyz_A           70 VDYIMGLAAIYQIKEQFQQAADLYAVAFA------------------LGKNDYTPVFHTGQCQLRLKAPLKAKECFELVI  131 (151)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHH------------------HSSSCCHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHccHHHHHHHHHHHHh------------------hCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            45578899999999999999999999999                  667777899999999999999999999999999


Q ss_pred             HcCCCchHHHHHHHHHhhh
Q 021445          292 RDGDDNVKALFRQGQVSII  310 (312)
Q Consensus       292 ~l~p~~~Ka~~rrg~a~~~  310 (312)
                      ++.|+..  +-.+++.++.
T Consensus       132 ~l~~~~~--~~~~A~~ll~  148 (151)
T 3gyz_A          132 QHSNDEK--LKIKAQSYLD  148 (151)
T ss_dssp             HHCCCHH--HHHHHHHHHH
T ss_pred             HhCCCHH--HHHHHHHHHH
Confidence            9999875  6667776653

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A

Probab=98.86  E-value=7.7e-09  Score=84.24  Aligned_cols=82  Identities=15%  Similarity=0.229  Sum_probs=69.6

Q ss_pred             hhhhhHhhhhhHHhhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHcCCHHHHHHHHHHH
Q 021445          211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA  290 (312)
Q Consensus       211 ~~~~~k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~a  290 (312)
                      .+..+.+.|+.+++.|+|++|+..|++||+                  ++|....++.++|.||.+++++++|+..+.++
T Consensus         4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~------------------~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~   65 (184)
T 3vtx_A            4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLK------------------ADPNNVETLLKLGKTYMDIGLPNDAIESLKKF   65 (184)
T ss_dssp             CHHHHHHHHHHHHHHTCHHHHHHHHHHHHH------------------HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH------------------hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence            456678999999999999999999999999                  55666778888888888888888888888888


Q ss_pred             HHcCCCchHHHHHHHHHhhh
Q 021445          291 MRDGDDNVKALFRQGQVSII  310 (312)
Q Consensus       291 l~l~p~~~Ka~~rrg~a~~~  310 (312)
                      +..+|.+..+++..|.++..
T Consensus        66 ~~~~~~~~~~~~~~~~~~~~   85 (184)
T 3vtx_A           66 VVLDTTSAEAYYILGSANFM   85 (184)
T ss_dssp             HHHCCCCHHHHHHHHHHHHH
T ss_pred             HhcCchhHHHHHHHHHHHHH
Confidence            88888888888888777654

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}

Probab=98.86  E-value=4.4e-09  Score=88.94  Aligned_cols=83  Identities=18%  Similarity=0.201  Sum_probs=76.7

Q ss_pred             hhhhhHhhhhhHHhhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHcCCHHHHHHHHHHH
Q 021445          211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA  290 (312)
Q Consensus       211 ~~~~~k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~a  290 (312)
                      .+..+...|..+++.|+|++|+..|+++|+                  ++|....++.++|.++.++|++++|+..++++
T Consensus         4 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~------------------~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~a   65 (217)
T 2pl2_A            4 AEQNPLRLGVQLYALGRYDAALTLFERALK------------------ENPQDPEALYWLARTQLKLGLVNPALENGKTL   65 (217)
T ss_dssp             CCHHHHHHHHHHHHTTCHHHHHHHHHHHHT------------------TSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHH------------------hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            355678999999999999999999999999                  56667889999999999999999999999999


Q ss_pred             HHcCCCchHHHHHHHHHhhhh
Q 021445          291 MRDGDDNVKALFRQGQVSIIL  311 (312)
Q Consensus       291 l~l~p~~~Ka~~rrg~a~~~L  311 (312)
                      ++++|+++.+++.+|.++..+
T Consensus        66 l~~~P~~~~a~~~lg~~~~~~   86 (217)
T 2pl2_A           66 VARTPRYLGGYMVLSEAYVAL   86 (217)
T ss_dssp             HHHCTTCHHHHHHHHHHHHHH
T ss_pred             HHhCCCcHHHHHHHHHHHHHh
Confidence            999999999999999998764

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}

Probab=98.86  E-value=5.8e-09  Score=79.76  Aligned_cols=83  Identities=10%  Similarity=0.017  Sum_probs=75.3

Q ss_pred             hhhhHhhhhhHHhhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHcCCHHHHHHHHHHHH
Q 021445          212 VDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAM  291 (312)
Q Consensus       212 ~~~~k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al  291 (312)
                      +..+...|..+++.|+|++|+..|+++++                  +.|....+|.++|.|+.++|++++|+.++.+++
T Consensus        38 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~------------------~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al   99 (126)
T 3upv_A           38 ARGYSNRAAALAKLMSFPEAIADCNKAIE------------------KDPNFVRAYIRKATAQIAVKEYASALETLDAAR   99 (126)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHH------------------HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHhcCHHHHHHHHHHHHH------------------hCCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHH
Confidence            45678899999999999999999999999                  556667899999999999999999999999999


Q ss_pred             HcC------CCchHHHHHHHHHhhhhC
Q 021445          292 RDG------DDNVKALFRQGQVSIILL  312 (312)
Q Consensus       292 ~l~------p~~~Ka~~rrg~a~~~L~  312 (312)
                      +++      |.+..++...+.+...++
T Consensus       100 ~~~p~~~~~p~~~~~~~~l~~~~~~l~  126 (126)
T 3upv_A          100 TKDAEVNNGSSAREIDQLYYKASQQRF  126 (126)
T ss_dssp             HHHHHHHTTTTHHHHHHHHHHHHHHC-
T ss_pred             HhCcccCCchhHHHHHHHHHHHHHhhC
Confidence            999      999999999998887663

>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1

Probab=98.84  E-value=2.7e-09  Score=85.80  Aligned_cols=73  Identities=12%  Similarity=0.097  Sum_probs=66.7

Q ss_pred             hHHhhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHcCCH----------HHHHHHHHHH
Q 021445          221 EHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDL----------KGALLDTEFA  290 (312)
Q Consensus       221 ~~~~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~----------~~Ai~~~~~a  290 (312)
                      ..-+.+.|++|+..|.+|++                  ++|....+|.|++.|+++++++          ++|+..+++|
T Consensus        11 ~~~r~~~feeA~~~~~~Ai~------------------l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~A   72 (158)
T 1zu2_A           11 EFDRILLFEQIRQDAENTYK------------------SNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEA   72 (158)
T ss_dssp             SHHHHHHHHHHHHHHHHHHH------------------HCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhHHHHHHHHHHHHHH------------------HCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHH
Confidence            45567899999999999999                  7888899999999999999875          5999999999


Q ss_pred             HHcCCCchHHHHHHHHHhhhh
Q 021445          291 MRDGDDNVKALFRQGQVSIIL  311 (312)
Q Consensus       291 l~l~p~~~Ka~~rrg~a~~~L  311 (312)
                      |+++|++..|||.+|.||..+
T Consensus        73 L~ldP~~~~A~~~LG~ay~~l   93 (158)
T 1zu2_A           73 LLIDPKKDEAVWCIGNAYTSF   93 (158)
T ss_dssp             HHHCTTCHHHHHHHHHHHHHH
T ss_pred             HHhCcCcHHHHHHHHHHHHHh
Confidence            999999999999999999864

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...

Probab=98.83  E-value=1e-08  Score=94.80  Aligned_cols=81  Identities=11%  Similarity=0.090  Sum_probs=44.2

Q ss_pred             hhhhhHhhhhhHHhhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHcCC-HHHHHHHHHH
Q 021445          211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGD-LKGALLDTEF  289 (312)
Q Consensus       211 ~~~~~k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~-~~~Ai~~~~~  289 (312)
                      .+..+...|..+.+.|+|++|+..|++||.                  ++|....+|.||+.++.++|+ +++|+.++++
T Consensus        96 ~~~a~~~lg~~~~~~g~~~~Al~~~~~al~------------------l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~  157 (382)
T 2h6f_A           96 FRDVYDYFRAVLQRDERSERAFKLTRDAIE------------------LNAANYTVWHFRRVLLKSLQKDLHEEMNYITA  157 (382)
T ss_dssp             HHHHHHHHHHHHHHTCCCHHHHHHHHHHHH------------------HCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHCCChHHHHHHHHHHHH------------------hCccCHHHHHHHHHHHHHcccCHHHHHHHHHH
Confidence            344455666666666666666666666666                  344444445555555555553 5555555555


Q ss_pred             HHHcCCCchHHHHHHHHHhh
Q 021445          290 AMRDGDDNVKALFRQGQVSI  309 (312)
Q Consensus       290 al~l~p~~~Ka~~rrg~a~~  309 (312)
                      ||+++|++..+|+.+|.+|.
T Consensus       158 al~l~P~~~~a~~~~g~~~~  177 (382)
T 2h6f_A          158 IIEEQPKNYQVWHHRRVLVE  177 (382)
T ss_dssp             HHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHCCCCHHHHHHHHHHHH
Confidence            55555555555555554444

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...

Probab=98.83  E-value=4e-09  Score=97.46  Aligned_cols=81  Identities=10%  Similarity=-0.077  Sum_probs=52.6

Q ss_pred             hhhhHhhhhhHHhhhc-HHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHcCCHHHHHHHHHHH
Q 021445          212 VDSIKVFGNEHYKKQD-YKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA  290 (312)
Q Consensus       212 ~~~~k~~Gn~~~~~~~-y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~a  290 (312)
                      +..+..+|..+.+.|+ |++|+..|++||+                  ++|....+|.||+.++.++|+|++|+.++++|
T Consensus       131 ~~a~~~~g~~l~~~g~d~~eAl~~~~~al~------------------l~P~~~~a~~~~g~~~~~~g~~~eAl~~~~ka  192 (382)
T 2h6f_A          131 YTVWHFRRVLLKSLQKDLHEEMNYITAIIE------------------EQPKNYQVWHHRRVLVEWLRDPSQELEFIADI  192 (382)
T ss_dssp             HHHHHHHHHHHHHTTCCHHHHHHHHHHHHH------------------HCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcccCHHHHHHHHHHHHH------------------HCCCCHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence            4557889999999997 9999999999998                  34444445555555555555555555555555


Q ss_pred             HHcCCCchHHHHHHHHHhhh
Q 021445          291 MRDGDDNVKALFRQGQVSII  310 (312)
Q Consensus       291 l~l~p~~~Ka~~rrg~a~~~  310 (312)
                      |+++|++..+|+.+|.++..
T Consensus       193 l~ldP~~~~a~~~lg~~~~~  212 (382)
T 2h6f_A          193 LNQDAKNYHAWQHRQWVIQE  212 (382)
T ss_dssp             HHHCTTCHHHHHHHHHHHHH
T ss_pred             HHhCccCHHHHHHHHHHHHH
Confidence            55555555555555555443

>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*

Probab=98.83  E-value=6.7e-09  Score=103.57  Aligned_cols=99  Identities=15%  Similarity=0.144  Sum_probs=69.5

Q ss_pred             hhhHhhhhhHHhhhcHHHHHHHHHHHHHHhhhccc---------cCCCCch-------hhhHHHHHHHHHHhHHHHHHHH
Q 021445          213 DSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWE---------KEGIDEG-------KSSSLRKTKSQIFTNSSACKLK  276 (312)
Q Consensus       213 ~~~k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~---------~~~~~~~-------~~~~~~~~~~~~~~N~a~~~~k  276 (312)
                      ..+.+.|+.+.+.|+|++|+..|++||++-.....         ....+-+       ...+++|....+|.|+|.+|.+
T Consensus        44 ~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~nLg~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~  123 (723)
T 4gyw_A           44 AAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKD  123 (723)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence            34455666666666666666666666653111000         0000001       1112677788999999999999


Q ss_pred             cCCHHHHHHHHHHHHHcCCCchHHHHHHHHHhhhh
Q 021445          277 LGDLKGALLDTEFAMRDGDDNVKALFRQGQVSIIL  311 (312)
Q Consensus       277 l~~~~~Ai~~~~~al~l~p~~~Ka~~rrg~a~~~L  311 (312)
                      +|++++|++.+++||+++|+++.+|+.+|.+|..+
T Consensus       124 ~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~  158 (723)
T 4gyw_A          124 SGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIV  158 (723)
T ss_dssp             TTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHT
T ss_pred             cCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhc
Confidence            99999999999999999999999999999999865

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}

Probab=98.82  E-value=8.1e-09  Score=97.04  Aligned_cols=85  Identities=26%  Similarity=0.363  Sum_probs=77.6

Q ss_pred             hhhhhhhhHhhhhhHHhhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHcCCHHHHHHHH
Q 021445          208 WMNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDT  287 (312)
Q Consensus       208 ~~~~~~~~k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~  287 (312)
                      ..+.+..++..|+.+++.|+|++|+..|++++..                  .| ...++.++|.|++++|+|++|+..+
T Consensus         2 ~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~------------------~p-~~~~~~~la~~~~~~g~~~~A~~~~   62 (514)
T 2gw1_A            2 KDKYALALKDKGNQFFRNKKYDDAIKYYNWALEL------------------KE-DPVFYSNLSACYVSVGDLKKVVEMS   62 (514)
T ss_dssp             HHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHH------------------CC-CHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred             cchhHHHHHHHHHHHHHhccHHHHHHHHHHHHhc------------------Cc-cHHHHHhHHHHHHHHhhHHHHHHHH
Confidence            3467889999999999999999999999999993                  23 2568999999999999999999999


Q ss_pred             HHHHHcCCCchHHHHHHHHHhhhh
Q 021445          288 EFAMRDGDDNVKALFRQGQVSIIL  311 (312)
Q Consensus       288 ~~al~l~p~~~Ka~~rrg~a~~~L  311 (312)
                      +++++++|++..+|+.+|.+|..+
T Consensus        63 ~~al~~~p~~~~~~~~l~~~~~~~   86 (514)
T 2gw1_A           63 TKALELKPDYSKVLLRRASANEGL   86 (514)
T ss_dssp             HHHHHHCSCCHHHHHHHHHHHHHT
T ss_pred             HHHhccChHHHHHHHHHHHHHHHH
Confidence            999999999999999999999765

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A

Probab=98.82  E-value=4.5e-09  Score=99.60  Aligned_cols=92  Identities=25%  Similarity=0.329  Sum_probs=82.7

Q ss_pred             CCChhhhhhhhhhhHhhhhhHHhhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHcCCHH
Q 021445          202 PNELSWWMNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLK  281 (312)
Q Consensus       202 ~~~~~~~~~~~~~~k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~  281 (312)
                      ..+.++..+.+..+...|+.+++.|+|++|+..|+++++                  ..|....++.++|.||+++|+|+
T Consensus        15 ~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~------------------~~p~~~~~~~~la~~~~~~g~~~   76 (537)
T 3fp2_A           15 GLSPSQRQAYAVQLKNRGNHFFTAKNFNEAIKYYQYAIE------------------LDPNEPVFYSNISACYISTGDLE   76 (537)
T ss_dssp             TSCHHHHHHHHHHHHHHHHHHHHTTCCC-CHHHHHHHHH------------------HCTTCHHHHHHHHHHHHHHTCHH
T ss_pred             CCCcchhHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHh------------------hCCCCcHHHHHHHHHHHHcCCHH
Confidence            345566667889999999999999999999999999999                  45566789999999999999999


Q ss_pred             HHHHHHHHHHHcCCCchHHHHHHHHHhhhh
Q 021445          282 GALLDTEFAMRDGDDNVKALFRQGQVSIIL  311 (312)
Q Consensus       282 ~Ai~~~~~al~l~p~~~Ka~~rrg~a~~~L  311 (312)
                      +|++.++++++++|+++.+++.+|.++..+
T Consensus        77 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~  106 (537)
T 3fp2_A           77 KVIEFTTKALEIKPDHSKALLRRASANESL  106 (537)
T ss_dssp             HHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCCchHHHHHHHHHHHHHc
Confidence            999999999999999999999999999765

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8

Probab=98.81  E-value=4.6e-09  Score=84.62  Aligned_cols=76  Identities=13%  Similarity=0.117  Sum_probs=65.0

Q ss_pred             hhhhHhhhhhHHhhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHH----hHHHHHHHHcCCHHHHHHHH
Q 021445          212 VDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIF----TNSSACKLKLGDLKGALLDT  287 (312)
Q Consensus       212 ~~~~k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~----~N~a~~~~kl~~~~~Ai~~~  287 (312)
                      +..+.++|..+.+.|+|++|+.+|++||++++..           .+++|....+|    .|+|.++.++|+|++|+.++
T Consensus        57 a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~-----------~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y  125 (159)
T 2hr2_A           57 AFCHAGLAEALAGLRSFDEALHSADKALHYFNRR-----------GELNQDEGKLWISAVYSRALALDGLGRGAEAMPEF  125 (159)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH-----------CCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhcc-----------ccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHH
Confidence            4478999999999999999999999999953331           11266677778    99999999999999999999


Q ss_pred             HHHHHcCCCch
Q 021445          288 EFAMRDGDDNV  298 (312)
Q Consensus       288 ~~al~l~p~~~  298 (312)
                      ++||+++|++.
T Consensus       126 ~kAlel~p~d~  136 (159)
T 2hr2_A          126 KKVVEMIEERK  136 (159)
T ss_dssp             HHHHHHHHHCC
T ss_pred             HHHHhcCCCcH
Confidence            99999998765

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A

Probab=98.80  E-value=1.1e-08  Score=92.59  Aligned_cols=82  Identities=18%  Similarity=0.148  Sum_probs=75.8

Q ss_pred             hhhhHhhhhhHHhhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHcCCHHHHHHHHHHHH
Q 021445          212 VDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAM  291 (312)
Q Consensus       212 ~~~~k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al  291 (312)
                      +..+.+.|..+++.|+|++|+..|++||+                  +.|....+|.|+|.+|+++++|++|+.++.+||
T Consensus       196 ~~~~~nla~~~~~~g~~~~A~~~~~~al~------------------~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al  257 (336)
T 1p5q_A          196 LASHLNLAMCHLKLQAFSAAIESCNKALE------------------LDSNNEKGLSRRGEAHLAVNDFELARADFQKVL  257 (336)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHH------------------HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHH------------------hCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence            46778899999999999999999999999                  556677899999999999999999999999999


Q ss_pred             HcCCCchHHHHHHHHHhhhh
Q 021445          292 RDGDDNVKALFRQGQVSIIL  311 (312)
Q Consensus       292 ~l~p~~~Ka~~rrg~a~~~L  311 (312)
                      +++|++..+++.+|.++..+
T Consensus       258 ~l~P~~~~a~~~l~~~~~~~  277 (336)
T 1p5q_A          258 QLYPNNKAAKTQLAVCQQRI  277 (336)
T ss_dssp             HHCSSCHHHHHHHHHHHHHH
T ss_pred             HHCCCCHHHHHHHHHHHHHH
Confidence            99999999999999998754

>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A

Probab=98.78  E-value=3.4e-08  Score=73.76  Aligned_cols=83  Identities=23%  Similarity=0.139  Sum_probs=69.6

Q ss_pred             hhhhHhhhhhHHhhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHcCCHHHHHHHHHHHH
Q 021445          212 VDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAM  291 (312)
Q Consensus       212 ~~~~k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al  291 (312)
                      +..+.+.|..+|+.++|..|+..|++|++......   .        .......++.++|.|+.++|++++|+...++|+
T Consensus         5 a~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~---~--------~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al   73 (104)
T 2v5f_A            5 AEDCFELGKVAYTEADYYHTELWMEQALRQLDEGE---I--------STIDKVSVLDYLSYAVYQQGDLDKALLLTKKLL   73 (104)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTC---C--------CSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccC---C--------CcccHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence            45678999999999999999999999999653210   0        012345788999999999999999999999999


Q ss_pred             HcCCCchHHHHHHH
Q 021445          292 RDGDDNVKALFRQG  305 (312)
Q Consensus       292 ~l~p~~~Ka~~rrg  305 (312)
                      +++|++..++..++
T Consensus        74 ~l~P~~~~~~~n~~   87 (104)
T 2v5f_A           74 ELDPEHQRANGNLK   87 (104)
T ss_dssp             HHCTTCHHHHHHHH
T ss_pred             hcCCCCHHHHhhHH
Confidence            99999999987776

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}

Probab=98.78  E-value=1.7e-08  Score=80.84  Aligned_cols=80  Identities=11%  Similarity=0.071  Sum_probs=69.7

Q ss_pred             hhhhhHhhhhhHHhhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHcCCHHHHHHHHHHH
Q 021445          211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA  290 (312)
Q Consensus       211 ~~~~~k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~a  290 (312)
                      .+..+.+.|..+++.|+|++|+..|++||+                  ++|....+|.++|.||+.+|+|++|+.++.++
T Consensus        62 ~~~~~~nla~~~~~~~~~~~A~~~~~~al~------------------~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~a  123 (162)
T 3rkv_A           62 NIPLYANMSQCYLNIGDLHEAEETSSEVLK------------------REETNEKALFRRAKARIAAWKLDEAEEDLKLL  123 (162)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHHHHHH------------------HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCcHHHHHHHHHHHHh------------------cCCcchHHHHHHHHHHHHHhcHHHHHHHHHHH
Confidence            456678999999999999999999999999                  66777889999999999999999999999999


Q ss_pred             HHcCCCchHH-HHHHHHHh
Q 021445          291 MRDGDDNVKA-LFRQGQVS  308 (312)
Q Consensus       291 l~l~p~~~Ka-~~rrg~a~  308 (312)
                      |+++|++..+ ....+.+.
T Consensus       124 l~l~p~~~~~~~~~l~~~~  142 (162)
T 3rkv_A          124 LRNHPAAASVVAREMKIVT  142 (162)
T ss_dssp             HHHCGGGHHHHHHHHHHHH
T ss_pred             HhcCCCCHHHHHHHHHHHH
Confidence            9999999843 44444443

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}

Probab=98.77  E-value=1.7e-08  Score=76.90  Aligned_cols=82  Identities=13%  Similarity=0.046  Sum_probs=74.0

Q ss_pred             hhhhHhhhhhHHhhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHcCCHHHHHHHHHHHH
Q 021445          212 VDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAM  291 (312)
Q Consensus       212 ~~~~k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al  291 (312)
                      ...+...|..++..++|++|+..|.++++                  +.+....++.++|.++.+++++++|+..+.+++
T Consensus        50 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~------------------~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~  111 (133)
T 2lni_A           50 AKLYSNRAACYTKLLEFQLALKDCEECIQ------------------LEPTFIKGYTRKAAALEAMKDYTKAMDVYQKAL  111 (133)
T ss_dssp             HHHHHHHHHHHTTTTCHHHHHHHHHHHHH------------------HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHH------------------hCCCchHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence            45578889999999999999999999999                  344456789999999999999999999999999


Q ss_pred             HcCCCchHHHHHHHHHhhhh
Q 021445          292 RDGDDNVKALFRQGQVSIIL  311 (312)
Q Consensus       292 ~l~p~~~Ka~~rrg~a~~~L  311 (312)
                      +++|.+..+++..+.++..+
T Consensus       112 ~~~p~~~~~~~~l~~~~~~~  131 (133)
T 2lni_A          112 DLDSSCKEAADGYQRCMMAQ  131 (133)
T ss_dssp             HHCGGGTHHHHHHHHHHHHH
T ss_pred             HhCCCchHHHHHHHHHHHHh
Confidence            99999999999999998764

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A

Probab=98.76  E-value=1.3e-08  Score=96.06  Aligned_cols=82  Identities=16%  Similarity=0.122  Sum_probs=71.2

Q ss_pred             hhhhHhhhhhHHhhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHcCCHHHHHHHHHHHH
Q 021445          212 VDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAM  291 (312)
Q Consensus       212 ~~~~k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al  291 (312)
                      +..+.+.|..+++.++|++|+..|++||+                  +.|....+|.|+|.||+++++|++|+.++.+||
T Consensus       317 ~~~~~nla~~~~~~g~~~~A~~~~~~al~------------------~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al  378 (457)
T 1kt0_A          317 LAAFLNLAMCYLKLREYTKAVECCDKALG------------------LDSANEKGLYRRGEAQLLMNEFESAKGDFEKVL  378 (457)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHH------------------HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHh------------------cCCccHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence            45567899999999999999999999999                  556678899999999999999999999999999


Q ss_pred             HcCCCchHHHHHHHHHhhhh
Q 021445          292 RDGDDNVKALFRQGQVSIIL  311 (312)
Q Consensus       292 ~l~p~~~Ka~~rrg~a~~~L  311 (312)
                      +++|++..+++.++.++..+
T Consensus       379 ~l~P~~~~a~~~l~~~~~~~  398 (457)
T 1kt0_A          379 EVNPQNKAARLQISMCQKKA  398 (457)
T ss_dssp             TTC----CHHHHHHHHHHHH
T ss_pred             HhCCCCHHHHHHHHHHHHHH
Confidence            99999999999999998754

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}

Probab=98.74  E-value=1.6e-08  Score=85.44  Aligned_cols=82  Identities=17%  Similarity=0.067  Sum_probs=67.4

Q ss_pred             hhhhHhhhhhHHhhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHc-----------CCH
Q 021445          212 VDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKL-----------GDL  280 (312)
Q Consensus       212 ~~~~k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl-----------~~~  280 (312)
                      +..+...|..+++.|++++|+..|+++++                  +.|....++.|+|.++.++           |++
T Consensus        39 ~~a~~~lg~~~~~~g~~~~A~~~~~~al~------------------~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~g~~  100 (217)
T 2pl2_A           39 PEALYWLARTQLKLGLVNPALENGKTLVA------------------RTPRYLGGYMVLSEAYVALYRQAEDRERGKGYL  100 (217)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHH------------------HCTTCHHHHHHHHHHHHHHHHTCSSHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHH------------------hCCCcHHHHHHHHHHHHHhhhhhhhhcccccCH
Confidence            45578899999999999999999999999                  5566667778888888888           888


Q ss_pred             HHHHHHHHHHHHcCCCchHHHHHHHHHhhhh
Q 021445          281 KGALLDTEFAMRDGDDNVKALFRQGQVSIIL  311 (312)
Q Consensus       281 ~~Ai~~~~~al~l~p~~~Ka~~rrg~a~~~L  311 (312)
                      ++|+..++++++++|+++.+|+.+|.+|..+
T Consensus       101 ~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~  131 (217)
T 2pl2_A          101 EQALSVLKDAERVNPRYAPLHLQRGLVYALL  131 (217)
T ss_dssp             HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHhCcccHHHHHHHHHHHHHc
Confidence            8888888888888888888888888777653

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A

Probab=98.74  E-value=3.2e-08  Score=80.52  Aligned_cols=53  Identities=11%  Similarity=0.005  Sum_probs=44.9

Q ss_pred             HHHHHHHHHhHHHHHHHHcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHhhhh
Q 021445          259 LRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQVSIIL  311 (312)
Q Consensus       259 ~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~l~p~~~Ka~~rrg~a~~~L  311 (312)
                      +.|....++.++|.++.++|+|++|++.++++++++|.++.+|+.+|.+|..+
T Consensus       102 ~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~  154 (184)
T 3vtx_A          102 LNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGK  154 (184)
T ss_dssp             HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred             hCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHC
Confidence            34555678888999999999999999999999999999999999999888765

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*

Probab=98.73  E-value=2e-08  Score=79.81  Aligned_cols=78  Identities=14%  Similarity=0.098  Sum_probs=66.8

Q ss_pred             hhhhHhhhhhHHhhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHcCCHHHHHHHHHHHH
Q 021445          212 VDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAM  291 (312)
Q Consensus       212 ~~~~k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al  291 (312)
                      +..+...|..+++.|+|++|+..|++|+.                  +.|....++.|+|.||+.+|++++|+..+.+++
T Consensus        55 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~------------------l~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al  116 (148)
T 2vgx_A           55 SRFFLGLGACRQAMGQYDLAIHSYSYGAV------------------MDIXEPRFPFHAAECLLQXGELAEAESGLFLAQ  116 (148)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHH------------------HSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhHHHHHHHHHHHHh------------------cCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            44567899999999999999999999999                  556667799999999999999999999999999


Q ss_pred             HcCCCchHHHHHHHHH
Q 021445          292 RDGDDNVKALFRQGQV  307 (312)
Q Consensus       292 ~l~p~~~Ka~~rrg~a  307 (312)
                      +++|.++.....+.++
T Consensus       117 ~~~p~~~~~~~~~~~~  132 (148)
T 2vgx_A          117 ELIANXPEFXELSTRV  132 (148)
T ss_dssp             HHHTTCGGGHHHHHHH
T ss_pred             HHCcCCCcchHHHHHH
Confidence            9999877654433333

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1

Probab=98.73  E-value=4.7e-08  Score=73.77  Aligned_cols=82  Identities=13%  Similarity=0.011  Sum_probs=73.5

Q ss_pred             hhhhHhhhhhHHhhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHcCCHHHHHHHHHHHH
Q 021445          212 VDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAM  291 (312)
Q Consensus       212 ~~~~k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al  291 (312)
                      +..+...|..++..|+|++|+..|.+++.                  ..|....++.++|.++.+++++++|+..+.+++
T Consensus        46 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~  107 (131)
T 2vyi_A           46 AVYFCNRAAAYSKLGNYAGAVQDCERAIC------------------IDPAYSKAYGRMGLALSSLNKHVEAVAYYKKAL  107 (131)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHH------------------HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhchHHHHHHHHHHHh------------------cCccCHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence            44567889999999999999999999999                  334446689999999999999999999999999


Q ss_pred             HcCCCchHHHHHHHHHhhhh
Q 021445          292 RDGDDNVKALFRQGQVSIIL  311 (312)
Q Consensus       292 ~l~p~~~Ka~~rrg~a~~~L  311 (312)
                      +++|.+..+++..|.++..+
T Consensus       108 ~~~p~~~~~~~~l~~~~~~~  127 (131)
T 2vyi_A          108 ELDPDNETYKSNLKIAELKL  127 (131)
T ss_dssp             HHSTTCHHHHHHHHHHHHHH
T ss_pred             hcCccchHHHHHHHHHHHHH
Confidence            99999999999999998765

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*

Probab=98.73  E-value=3.4e-08  Score=82.12  Aligned_cols=82  Identities=10%  Similarity=0.004  Sum_probs=66.6

Q ss_pred             hhhhHhhhhhHHhhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHcCCHHHHHHHHHHHH
Q 021445          212 VDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAM  291 (312)
Q Consensus       212 ~~~~k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al  291 (312)
                      +..+...|..+++.|+|++|+..|.++++                  +.|....++.|+|.+|.++|+|++|+.++++++
T Consensus        37 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~------------------~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al   98 (213)
T 1hh8_A           37 SRICFNIGCMYTILKNMTEAEKAFTRSIN------------------RDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEAL   98 (213)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHH------------------HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHHHHH------------------hCccchHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence            34677888888888888888888888888                  344456788889999999999999999999999


Q ss_pred             HcCCCch----------------HHHHHHHHHhhhh
Q 021445          292 RDGDDNV----------------KALFRQGQVSIIL  311 (312)
Q Consensus       292 ~l~p~~~----------------Ka~~rrg~a~~~L  311 (312)
                      ++.|.+.                .+++.+|.+|..+
T Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  134 (213)
T 1hh8_A           99 IQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKK  134 (213)
T ss_dssp             HTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHT
T ss_pred             HhCCCccHHHHHHhccccCccchHHHHHHHHHHHHc
Confidence            8777766                8888888888654

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A

Probab=98.72  E-value=1.8e-08  Score=79.10  Aligned_cols=80  Identities=18%  Similarity=0.142  Sum_probs=68.6

Q ss_pred             hhhhHhhhhhHHhhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHcCCHHHHHHHHHHHH
Q 021445          212 VDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAM  291 (312)
Q Consensus       212 ~~~~k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al  291 (312)
                      ...+...|..+++.|+|++|+..|++|+.                  +.|....++.|+|.|+..+|++++|+..+++++
T Consensus        52 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~------------------~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al  113 (142)
T 2xcb_A           52 ARYFLGLGACRQSLGLYEQALQSYSYGAL------------------MDINEPRFPFHAAECHLQLGDLDGAESGFYSAR  113 (142)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHH------------------HCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhHHHHHHHHHHHHh------------------cCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            44567889999999999999999999999                  556667789999999999999999999999999


Q ss_pred             HcCCCchHHHHHHHHHhh
Q 021445          292 RDGDDNVKALFRQGQVSI  309 (312)
Q Consensus       292 ~l~p~~~Ka~~rrg~a~~  309 (312)
                      +++|.++.....+.++..
T Consensus       114 ~~~p~~~~~~~~~~~~~~  131 (142)
T 2xcb_A          114 ALAAAQPAHEALAARAGA  131 (142)
T ss_dssp             HHHHTCGGGHHHHHHHHH
T ss_pred             HhCCCCcchHHHHHHHHH
Confidence            999988766555555443

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1

Probab=98.71  E-value=4.2e-08  Score=81.23  Aligned_cols=82  Identities=16%  Similarity=0.101  Sum_probs=74.7

Q ss_pred             hhhhHhhhhhHHhhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHcCCHHHHHHHHHHHH
Q 021445          212 VDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAM  291 (312)
Q Consensus       212 ~~~~k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al  291 (312)
                      +..+...|..+++.|+|++|+..|++++.                  +.|....++.++|.+|+++++|++|+..+.+++
T Consensus        88 ~~~~~~la~~~~~~~~~~~A~~~~~~al~------------------~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al  149 (198)
T 2fbn_A           88 ISCNLNLATCYNKNKDYPKAIDHASKVLK------------------IDKNNVKALYKLGVANMYFGFLEEAKENLYKAA  149 (198)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHH------------------HSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHH------------------hCcccHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence            46678899999999999999999999999                  455567799999999999999999999999999


Q ss_pred             HcCCCchHHHHHHHHHhhhh
Q 021445          292 RDGDDNVKALFRQGQVSIIL  311 (312)
Q Consensus       292 ~l~p~~~Ka~~rrg~a~~~L  311 (312)
                      +++|.+..++...+.++..+
T Consensus       150 ~~~p~~~~~~~~l~~~~~~~  169 (198)
T 2fbn_A          150 SLNPNNLDIRNSYELCVNKL  169 (198)
T ss_dssp             HHSTTCHHHHHHHHHHHHHH
T ss_pred             HHCCCcHHHHHHHHHHHHHH
Confidence            99999999999999988654

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}

Probab=98.70  E-value=4e-08  Score=74.34  Aligned_cols=73  Identities=8%  Similarity=0.040  Sum_probs=66.0

Q ss_pred             hhhhhHhhhhhHHhhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHcCCHHHHHHHHHHH
Q 021445          211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA  290 (312)
Q Consensus       211 ~~~~~k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~a  290 (312)
                      .+..+...|..+++.|+|++|+..|+++++                  +.|....++.|+|.|+.++|++++|+..+.++
T Consensus        26 ~~~~~~~lg~~~~~~~~~~~A~~~~~~al~------------------~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a   87 (117)
T 3k9i_A           26 LAECYLGLGSTFRTLGEYRKAEAVLANGVK------------------QFPNHQALRVFYAMVLYNLGRYEQGVELLLKI   87 (117)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH------------------HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH------------------hCCCchHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            356678999999999999999999999999                  55666789999999999999999999999999


Q ss_pred             HHcCCCchHHH
Q 021445          291 MRDGDDNVKAL  301 (312)
Q Consensus       291 l~l~p~~~Ka~  301 (312)
                      ++++|++....
T Consensus        88 l~~~p~~~~~~   98 (117)
T 3k9i_A           88 IAETSDDETIQ   98 (117)
T ss_dssp             HHHHCCCHHHH
T ss_pred             HHhCCCcHHHH
Confidence            99999987654

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A

Probab=98.68  E-value=8.7e-08  Score=71.64  Aligned_cols=99  Identities=23%  Similarity=0.222  Sum_probs=50.4

Q ss_pred             hhhhHhhhhhHHhhhcHHHHHHHHHHHHHHhhhccc---------cCCCCchhh-------hHHHHHHHHHHhHHHHHHH
Q 021445          212 VDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWE---------KEGIDEGKS-------SSLRKTKSQIFTNSSACKL  275 (312)
Q Consensus       212 ~~~~k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~---------~~~~~~~~~-------~~~~~~~~~~~~N~a~~~~  275 (312)
                      +..+...|..++..++|++|+..|.+++........         ......++.       ....+....++.++|.++.
T Consensus         9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~   88 (125)
T 1na0_A            9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYY   88 (125)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHH
Confidence            445566777777777777777777777763111000         000000000       0011223345555666666


Q ss_pred             HcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHhhh
Q 021445          276 KLGDLKGALLDTEFAMRDGDDNVKALFRQGQVSII  310 (312)
Q Consensus       276 kl~~~~~Ai~~~~~al~l~p~~~Ka~~rrg~a~~~  310 (312)
                      +++++++|+..+.++++++|.+..+++..|.++..
T Consensus        89 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~  123 (125)
T 1na0_A           89 KQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQK  123 (125)
T ss_dssp             HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHh
Confidence            66666666666666666666666666555555543

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*

Probab=98.68  E-value=3.4e-08  Score=82.15  Aligned_cols=80  Identities=19%  Similarity=0.102  Sum_probs=71.9

Q ss_pred             hhhhhHhhhhhHHhhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHcCCHHHHHHHHHHH
Q 021445          211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA  290 (312)
Q Consensus       211 ~~~~~k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~a  290 (312)
                      .+..+...|+.++..|+|++|+..|++++..                     ...++.|+|.+|.++|+|++|+..++++
T Consensus         5 ~~~~~~~~g~~~~~~~~~~~A~~~~~~a~~~---------------------~~~~~~~lg~~~~~~g~~~~A~~~~~~a   63 (213)
T 1hh8_A            5 EAISLWNEGVLAADKKDWKGALDAFSAVQDP---------------------HSRICFNIGCMYTILKNMTEAEKAFTRS   63 (213)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHTSSSC---------------------CHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhCCHHHHHHHHHHHcCC---------------------ChHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            4556789999999999999999999998640                     1458999999999999999999999999


Q ss_pred             HHcCCCchHHHHHHHHHhhhh
Q 021445          291 MRDGDDNVKALFRQGQVSIIL  311 (312)
Q Consensus       291 l~l~p~~~Ka~~rrg~a~~~L  311 (312)
                      ++++|.++.+|+.+|.+|..+
T Consensus        64 l~~~~~~~~~~~~lg~~~~~~   84 (213)
T 1hh8_A           64 INRDKHLAVAYFQRGMLYYQT   84 (213)
T ss_dssp             HHHCTTCHHHHHHHHHHHHHT
T ss_pred             HHhCccchHHHHHHHHHHHHc
Confidence            999999999999999999765

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A

Probab=98.67  E-value=1.5e-08  Score=74.83  Aligned_cols=69  Identities=10%  Similarity=0.054  Sum_probs=62.1

Q ss_pred             hhhhHhhhhhHHhhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHcCCHHHHHHHHHHHH
Q 021445          212 VDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAM  291 (312)
Q Consensus       212 ~~~~k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al  291 (312)
                      +..+...|..+++.|+|++|+..|+++++                  +.|....+|.++|.||.++|++++|++.+.+++
T Consensus         7 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~------------------~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al   68 (100)
T 3ma5_A            7 PFTRYALAQEHLKHDNASRALALFEELVE------------------TDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGI   68 (100)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHH------------------HSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHH------------------hCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            45688999999999999999999999999                  556667799999999999999999999999999


Q ss_pred             HcCCCch
Q 021445          292 RDGDDNV  298 (312)
Q Consensus       292 ~l~p~~~  298 (312)
                      ++.|.+.
T Consensus        69 ~l~~~~~   75 (100)
T 3ma5_A           69 EVAREEG   75 (100)
T ss_dssp             HHHHHHS
T ss_pred             hhhhcCC
Confidence            9987543

>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1

Probab=98.66  E-value=3e-08  Score=79.65  Aligned_cols=76  Identities=14%  Similarity=0.191  Sum_probs=65.5

Q ss_pred             hhhhhHhhhhhHHhhhcH----------HHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHcC--
Q 021445          211 AVDSIKVFGNEHYKKQDY----------KMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLG--  278 (312)
Q Consensus       211 ~~~~~k~~Gn~~~~~~~y----------~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~--  278 (312)
                      .++.+.+.|+.+...+++          ++|+..|++||+                  ++|....+|.|++.+|.+++  
T Consensus        35 ~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~------------------ldP~~~~A~~~LG~ay~~lg~l   96 (158)
T 1zu2_A           35 DADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALL------------------IDPKKDEAVWCIGNAYTSFAFL   96 (158)
T ss_dssp             CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHH------------------HCTTCHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHH------------------hCcCcHHHHHHHHHHHHHhccc
Confidence            455678899999988775          599999999999                  78888999999999999985  


Q ss_pred             ---------CHHHHHHHHHHHHHcCCCchHHHHHHHH
Q 021445          279 ---------DLKGALLDTEFAMRDGDDNVKALFRQGQ  306 (312)
Q Consensus       279 ---------~~~~Ai~~~~~al~l~p~~~Ka~~rrg~  306 (312)
                               +|++|++++.+||+++|++.  .|+++.
T Consensus        97 ~P~~~~a~g~~~eA~~~~~kAl~l~P~~~--~y~~al  131 (158)
T 1zu2_A           97 TPDETEAKHNFDLATQFFQQAVDEQPDNT--HYLKSL  131 (158)
T ss_dssp             CCCHHHHHHHHHHHHHHHHHHHHHCTTCH--HHHHHH
T ss_pred             CcchhhhhccHHHHHHHHHHHHHhCCCCH--HHHHHH
Confidence                     89999999999999999986  444443

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}

Probab=98.66  E-value=7.1e-08  Score=81.84  Aligned_cols=82  Identities=21%  Similarity=0.362  Sum_probs=73.6

Q ss_pred             hhhhHhhhhhHHhhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHcCCHHHHHHHHHHHH
Q 021445          212 VDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAM  291 (312)
Q Consensus       212 ~~~~k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al  291 (312)
                      +..+...|..++..|+|++|+..|+++++                  ..|....++.++|.++.++|++++|+..+++++
T Consensus       139 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~------------------~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al  200 (258)
T 3uq3_A          139 AEEARLEGKEYFTKSDWPNAVKAYTEMIK------------------RAPEDARGYSNRAAALAKLMSFPEAIADCNKAI  200 (258)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHH------------------HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHh------------------cCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence            45567899999999999999999999998                  334456789999999999999999999999999


Q ss_pred             HcCCCchHHHHHHHHHhhhh
Q 021445          292 RDGDDNVKALFRQGQVSIIL  311 (312)
Q Consensus       292 ~l~p~~~Ka~~rrg~a~~~L  311 (312)
                      +++|.+..+|+.+|.++..+
T Consensus       201 ~~~~~~~~~~~~l~~~~~~~  220 (258)
T 3uq3_A          201 EKDPNFVRAYIRKATAQIAV  220 (258)
T ss_dssp             HHCTTCHHHHHHHHHHHHHT
T ss_pred             HhCHHHHHHHHHHHHHHHHH
Confidence            99999999999999998765

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1

Probab=98.66  E-value=9.7e-08  Score=70.71  Aligned_cols=80  Identities=15%  Similarity=0.045  Sum_probs=71.2

Q ss_pred             hhhhHhhhhhHHhhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHcCCHHHHHHHHHHHH
Q 021445          212 VDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAM  291 (312)
Q Consensus       212 ~~~~k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al  291 (312)
                      ...+...|..++..|+|++|+..|.++++                  ..|....++.++|.++.+++++++|+..+.+++
T Consensus        38 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~------------------~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~   99 (118)
T 1elw_A           38 HVLYSNRSAAYAKKGDYQKAYEDGCKTVD------------------LKPDWGKGYSRKAAALEFLNRFEEAKRTYEEGL   99 (118)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHH------------------HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhccHHHHHHHHHHHHH------------------hCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence            44567889999999999999999999999                  334456789999999999999999999999999


Q ss_pred             HcCCCchHHHHHHHHHhh
Q 021445          292 RDGDDNVKALFRQGQVSI  309 (312)
Q Consensus       292 ~l~p~~~Ka~~rrg~a~~  309 (312)
                      +++|.+..+++..+.+..
T Consensus       100 ~~~~~~~~~~~~l~~~~~  117 (118)
T 1elw_A          100 KHEANNPQLKEGLQNMEA  117 (118)
T ss_dssp             TTCTTCHHHHHHHHHHHH
T ss_pred             HcCCCCHHHHHHHHHhhc
Confidence            999999999999888753

>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A

Probab=98.66  E-value=5.3e-08  Score=82.51  Aligned_cols=84  Identities=11%  Similarity=0.101  Sum_probs=72.3

Q ss_pred             hhhhHhhhhhHHhhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHcCCHHHHHHHHHHHH
Q 021445          212 VDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAM  291 (312)
Q Consensus       212 ~~~~k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al  291 (312)
                      +..+.+.|..+++.|+|++|+..|++++.....               .+....++.++|.||+++|+|++|+..+++++
T Consensus         4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~---------------~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l   68 (225)
T 2yhc_A            4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPF---------------GPYSQQVQLDLIYAYYKNADLPLAQAAIDRFI   68 (225)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT---------------STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---------------ChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence            456889999999999999999999999983211               12235689999999999999999999999999


Q ss_pred             HcCCCchH---HHHHHHHHhhh
Q 021445          292 RDGDDNVK---ALFRQGQVSII  310 (312)
Q Consensus       292 ~l~p~~~K---a~~rrg~a~~~  310 (312)
                      +++|++..   |+|.+|.++..
T Consensus        69 ~~~P~~~~~~~a~~~~g~~~~~   90 (225)
T 2yhc_A           69 RLNPTHPNIDYVMYMRGLTNMA   90 (225)
T ss_dssp             HHCTTCTTHHHHHHHHHHHHHH
T ss_pred             HHCcCCCcHHHHHHHHHHHHHh
Confidence            99999986   89999999864

>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}

Probab=98.65  E-value=8e-08  Score=81.02  Aligned_cols=81  Identities=12%  Similarity=0.062  Sum_probs=72.5

Q ss_pred             hhhHhhhhhHHhhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHcCCHHHHHHHHHHHHH
Q 021445          213 DSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMR  292 (312)
Q Consensus       213 ~~~k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~  292 (312)
                      ..+...|..+++.|+|++|+..|.++++                  +.|....++.++|.+|.++|++++|+..+.++++
T Consensus        43 ~~~~~~~~~~~~~~~~~~A~~~~~~al~------------------~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~  104 (228)
T 4i17_A           43 VTAYNCGVCADNIKKYKEAADYFDIAIK------------------KNYNLANAYIGKSAAYRDMKNNQEYIATLTEGIK  104 (228)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHH------------------TTCSHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhcHHHHHHHHHHHHH------------------hCcchHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence            3456689999999999999999999998                  5566788999999999999999999999999999


Q ss_pred             cCCCch-------HHHHHHHHHhhhh
Q 021445          293 DGDDNV-------KALFRQGQVSIIL  311 (312)
Q Consensus       293 l~p~~~-------Ka~~rrg~a~~~L  311 (312)
                      ++|++.       .+|+.+|.++..+
T Consensus       105 ~~p~~~~~~~~~~~~~~~~g~~~~~~  130 (228)
T 4i17_A          105 AVPGNATIEKLYAIYYLKEGQKFQQA  130 (228)
T ss_dssp             HSTTCHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HCCCcHHHHHHHHHHHHHHhHHHHHh
Confidence            999999       6688888887654

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}

Probab=98.62  E-value=1e-07  Score=77.18  Aligned_cols=82  Identities=16%  Similarity=0.246  Sum_probs=72.4

Q ss_pred             hhhhHhhhhhHHhhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHH-HHHcCCH--HHHHHHHH
Q 021445          212 VDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSAC-KLKLGDL--KGALLDTE  288 (312)
Q Consensus       212 ~~~~k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~-~~kl~~~--~~Ai~~~~  288 (312)
                      +..+...|..++..|+|++|+..|.+++.                  +.|....++.++|.+ +++++++  ++|+..+.
T Consensus        44 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~------------------~~p~~~~~~~~la~~l~~~~~~~~~~~A~~~~~  105 (177)
T 2e2e_A           44 SEQWALLGEYYLWQNDYSNSLLAYRQALQ------------------LRGENAELYAALATVLYYQASQHMTAQTRAMID  105 (177)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHH------------------HHCSCHHHHHHHHHHHHHHTTTCCCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHH------------------cCCCCHHHHHHHHHHHHHhcCCcchHHHHHHHH
Confidence            45678899999999999999999999999                  455567788999999 8899998  99999999


Q ss_pred             HHHHcCCCchHHHHHHHHHhhhh
Q 021445          289 FAMRDGDDNVKALFRQGQVSIIL  311 (312)
Q Consensus       289 ~al~l~p~~~Ka~~rrg~a~~~L  311 (312)
                      ++++++|.+..+++.+|.+|..+
T Consensus       106 ~al~~~p~~~~~~~~la~~~~~~  128 (177)
T 2e2e_A          106 KALALDSNEITALMLLASDAFMQ  128 (177)
T ss_dssp             HHHHHCTTCHHHHHHHHHHHHHT
T ss_pred             HHHHhCCCcHHHHHHHHHHHHHc
Confidence            99999999999999999988754

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A

Probab=98.61  E-value=1.8e-07  Score=69.88  Aligned_cols=50  Identities=18%  Similarity=0.194  Sum_probs=45.1

Q ss_pred             HHHHHHhHHHHHHHHcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHhhhh
Q 021445          262 TKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQVSIIL  311 (312)
Q Consensus       262 ~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~l~p~~~Ka~~rrg~a~~~L  311 (312)
                      ....++.++|.++.+++++++|+..+.++++++|.+..+++..|.++..+
T Consensus        41 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~   90 (125)
T 1na0_A           41 NNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQ   90 (125)
T ss_dssp             TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred             CcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh
Confidence            34568899999999999999999999999999999999999999988754

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=98.61  E-value=7.9e-08  Score=88.33  Aligned_cols=82  Identities=15%  Similarity=0.121  Sum_probs=73.3

Q ss_pred             hhhhHhhhhhHHhhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHcCCHHHHHHHHHHHH
Q 021445          212 VDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAM  291 (312)
Q Consensus       212 ~~~~k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al  291 (312)
                      +..+.+.|..+++.++|++|+..|++||+                  +.|....+|.++|.||+++++|++|+.++.+|+
T Consensus       273 ~~~~~nla~~~~~~g~~~~A~~~~~~al~------------------~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al  334 (370)
T 1ihg_A          273 LSCVLNIGACKLKMSDWQGAVDSCLEALE------------------IDPSNTKALYRRAQGWQGLKEYDQALADLKKAQ  334 (370)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHT------------------TCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhccCHHHHHHHHHHHHH------------------hCchhHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence            34467789999999999999999999999                  445567899999999999999999999999999


Q ss_pred             HcCCCchHHHHHHHHHhhhh
Q 021445          292 RDGDDNVKALFRQGQVSIIL  311 (312)
Q Consensus       292 ~l~p~~~Ka~~rrg~a~~~L  311 (312)
                      +++|++..++...+.++..+
T Consensus       335 ~l~P~~~~~~~~l~~~~~~~  354 (370)
T 1ihg_A          335 EIAPEDKAIQAELLKVKQKI  354 (370)
T ss_dssp             HHCTTCHHHHHHHHHHHHHH
T ss_pred             HhCCCCHHHHHHHHHHHHHH
Confidence            99999999999999887654

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}

Probab=98.60  E-value=1.1e-07  Score=84.58  Aligned_cols=83  Identities=17%  Similarity=0.161  Sum_probs=75.3

Q ss_pred             hhhhhHhhhhhHHhhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHcCCHHHHHHHHHHH
Q 021445          211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA  290 (312)
Q Consensus       211 ~~~~~k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~a  290 (312)
                      .++.+...|+.++..|+|++|+..|+++++                  ..|....++.++|.|++.+|++++|+..+.++
T Consensus         2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~------------------~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~   63 (359)
T 3ieg_A            2 DVEKHLELGKKLLAAGQLADALSQFHAAVD------------------GDPDNYIAYYRRATVFLAMGKSKAALPDLTKV   63 (359)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH------------------HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHh------------------hCcccHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence            356788999999999999999999999999                  44455679999999999999999999999999


Q ss_pred             HHcCCCchHHHHHHHHHhhhh
Q 021445          291 MRDGDDNVKALFRQGQVSIIL  311 (312)
Q Consensus       291 l~l~p~~~Ka~~rrg~a~~~L  311 (312)
                      ++++|.+..+++.+|.++..+
T Consensus        64 ~~~~~~~~~~~~~l~~~~~~~   84 (359)
T 3ieg_A           64 IALKMDFTAARLQRGHLLLKQ   84 (359)
T ss_dssp             HHHCTTCHHHHHHHHHHHHHH
T ss_pred             HHhCCCcchHHHHHHHHHHHc
Confidence            999999999999999998764

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=98.60  E-value=8.2e-08  Score=95.15  Aligned_cols=82  Identities=11%  Similarity=-0.019  Sum_probs=73.9

Q ss_pred             hhhhHhhhhhHHhhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHcCCHHHHHHHHHHHH
Q 021445          212 VDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAM  291 (312)
Q Consensus       212 ~~~~k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al  291 (312)
                      +..+...|..+++.|+|++|+..|+++++                  ++|....+|.|+|.+++++|+|++|+.++++||
T Consensus       433 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~------------------~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al  494 (681)
T 2pzi_A          433 VELPLMEVRALLDLGDVAKATRKLDDLAE------------------RVGWRWRLVWYRAVAELLTGDYDSATKHFTEVL  494 (681)
T ss_dssp             SHHHHHHHHHHHHHTCHHHHHHHHHHHHH------------------HHCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHhcCCHHHHHHHHHHHhc------------------cCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            34567889999999999999999999999                  677778899999999999999999999999999


Q ss_pred             HcCCCchHHHHHHHHHhhhh
Q 021445          292 RDGDDNVKALFRQGQVSIIL  311 (312)
Q Consensus       292 ~l~p~~~Ka~~rrg~a~~~L  311 (312)
                      +++|+++.+|+.+|.+|..+
T Consensus       495 ~l~P~~~~~~~~lg~~~~~~  514 (681)
T 2pzi_A          495 DTFPGELAPKLALAATAELA  514 (681)
T ss_dssp             HHSTTCSHHHHHHHHHHHHH
T ss_pred             HhCCCChHHHHHHHHHHHHc
Confidence            99999999999999998764

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1

Probab=98.59  E-value=1.2e-07  Score=81.53  Aligned_cols=83  Identities=12%  Similarity=0.047  Sum_probs=74.1

Q ss_pred             hhhhhHhhhhhHHhhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHcCCHHHHHHHHHHH
Q 021445          211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA  290 (312)
Q Consensus       211 ~~~~~k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~a  290 (312)
                      .+..+...|..++..|+|++|+..|.++++                  +.|....++.++|.++.++|++++|+..+.++
T Consensus        42 ~~~~~~~l~~~~~~~~~~~~A~~~~~~al~------------------~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a  103 (275)
T 1xnf_A           42 RAQLLYERGVLYDSLGLRALARNDFSQALA------------------IRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSV  103 (275)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH------------------HCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcccHHHHHHHHHHHHH------------------cCCCcHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence            355678889999999999999999999999                  34445678999999999999999999999999


Q ss_pred             HHcCCCchHHHHHHHHHhhhh
Q 021445          291 MRDGDDNVKALFRQGQVSIIL  311 (312)
Q Consensus       291 l~l~p~~~Ka~~rrg~a~~~L  311 (312)
                      ++++|.+..+++.+|.+|..+
T Consensus       104 l~~~~~~~~~~~~la~~~~~~  124 (275)
T 1xnf_A          104 LELDPTYNYAHLNRGIALYYG  124 (275)
T ss_dssp             HHHCTTCTHHHHHHHHHHHHT
T ss_pred             HhcCccccHHHHHHHHHHHHh
Confidence            999999999999999998764

>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}

Probab=98.58  E-value=8.4e-08  Score=82.81  Aligned_cols=85  Identities=9%  Similarity=-0.005  Sum_probs=72.7

Q ss_pred             hhhhhHhhhhhHHhhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHcCCHHHHHHHHHHH
Q 021445          211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA  290 (312)
Q Consensus       211 ~~~~~k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~a  290 (312)
                      .+..+...|..+++.|+|++|+..|+++++....               .+....++.++|.||+++|+|++|+..++++
T Consensus        14 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~---------------~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~   78 (261)
T 3qky_A           14 SPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRT---------------HEWAADAQFYLARAYYQNKEYLLAASEYERF   78 (261)
T ss_dssp             SHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSC---------------STTHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC---------------CcchHHHHHHHHHHHHHhCcHHHHHHHHHHH
Confidence            4667899999999999999999999999983211               1223678999999999999999999999999


Q ss_pred             HHcCCC---chHHHHHHHHHhhh
Q 021445          291 MRDGDD---NVKALFRQGQVSII  310 (312)
Q Consensus       291 l~l~p~---~~Ka~~rrg~a~~~  310 (312)
                      +++.|+   ...+++.+|.++..
T Consensus        79 l~~~p~~~~~~~a~~~lg~~~~~  101 (261)
T 3qky_A           79 IQIYQIDPRVPQAEYERAMCYYK  101 (261)
T ss_dssp             HHHCTTCTTHHHHHHHHHHHHHH
T ss_pred             HHHCCCCchhHHHHHHHHHHHHH
Confidence            999885   46799999999875

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}

Probab=98.57  E-value=1.5e-07  Score=84.88  Aligned_cols=83  Identities=11%  Similarity=0.033  Sum_probs=75.7

Q ss_pred             hhhhhHhhhhhHHhhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHcCCHHHHHHHHHHH
Q 021445          211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA  290 (312)
Q Consensus       211 ~~~~~k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~a  290 (312)
                      .+..+...|..+++.|+|++|+..|++++.                  ..|....++.++|.++.++|++++|+..++++
T Consensus        64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~------------------~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a  125 (365)
T 4eqf_A           64 DWPGAFEEGLKRLKEGDLPVTILFMEAAIL------------------QDPGDAEAWQFLGITQAENENEQAAIVALQRC  125 (365)
T ss_dssp             TCTTHHHHHHHHHHHTCHHHHHHHHHHHHH------------------HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             chhHHHHHHHHHHHCCCHHHHHHHHHHHHH------------------hCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence            355688999999999999999999999999                  44556778999999999999999999999999


Q ss_pred             HHcCCCchHHHHHHHHHhhhh
Q 021445          291 MRDGDDNVKALFRQGQVSIIL  311 (312)
Q Consensus       291 l~l~p~~~Ka~~rrg~a~~~L  311 (312)
                      ++++|.+..+|+.+|.+|..+
T Consensus       126 l~~~p~~~~~~~~l~~~~~~~  146 (365)
T 4eqf_A          126 LELQPNNLKALMALAVSYTNT  146 (365)
T ss_dssp             HHHCTTCHHHHHHHHHHHHHT
T ss_pred             HhcCCCCHHHHHHHHHHHHcc
Confidence            999999999999999998764

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1

Probab=98.54  E-value=5.8e-08  Score=74.34  Aligned_cols=70  Identities=9%  Similarity=0.055  Sum_probs=58.2

Q ss_pred             hhhhHhhhhhHHhhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHcCCHHHHHHHHHHHH
Q 021445          212 VDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAM  291 (312)
Q Consensus       212 ~~~~k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al  291 (312)
                      +..+...|..++..|++++|+..|++|++                  ++|....++.++|.++.++|++++|+..+++++
T Consensus        51 ~~a~~~lg~~~~~~g~~~~A~~~~~~al~------------------l~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al  112 (121)
T 1hxi_A           51 EEAWRSLGLTQAENEKDGLAIIALNHARM------------------LDPKDIAVHAALAVSHTNEHNANAALASLRAWL  112 (121)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHH------------------HCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHH------------------hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            44567899999999999999999999999                  667778899999999999999999999999999


Q ss_pred             HcCCCchH
Q 021445          292 RDGDDNVK  299 (312)
Q Consensus       292 ~l~p~~~K  299 (312)
                      +++|.+.+
T Consensus       113 ~~~P~~~~  120 (121)
T 1hxi_A          113 LSQPQYEQ  120 (121)
T ss_dssp             C-------
T ss_pred             HhCcCCCC
Confidence            99998764

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A

Probab=98.54  E-value=2.9e-07  Score=72.82  Aligned_cols=78  Identities=18%  Similarity=0.180  Sum_probs=68.3

Q ss_pred             hhhhHhhhhhHHhhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHcCCHHHHHHHHHHHH
Q 021445          212 VDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAM  291 (312)
Q Consensus       212 ~~~~k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al  291 (312)
                      ...+...|..++..|+|++|+..|.+++.                  +.|....++.++|.++.++|++++|+..+.+++
T Consensus        47 ~~~~~~~a~~~~~~~~~~~A~~~~~~a~~------------------~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~  108 (166)
T 1a17_A           47 AIYYGNRSLAYLRTECYGYALGDATRAIE------------------LDKKYIKGYYRRAASNMALGKFRAALRDYETVV  108 (166)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHH------------------HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHHHHH------------------hCcccHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence            44567889999999999999999999999                  344456789999999999999999999999999


Q ss_pred             HcCCCchHHHHHHHHH
Q 021445          292 RDGDDNVKALFRQGQV  307 (312)
Q Consensus       292 ~l~p~~~Ka~~rrg~a  307 (312)
                      +++|.+..++...+.+
T Consensus       109 ~~~p~~~~~~~~~~~~  124 (166)
T 1a17_A          109 KVKPHDKDAKMKYQEC  124 (166)
T ss_dssp             HHSTTCHHHHHHHHHH
T ss_pred             HhCCCCHHHHHHHHHH
Confidence            9999999988555555

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.54  E-value=2.6e-07  Score=71.60  Aligned_cols=80  Identities=21%  Similarity=0.098  Sum_probs=70.8

Q ss_pred             hhhhHhhhhhHHhhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHcCCHHHHHHHHHHHH
Q 021445          212 VDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAM  291 (312)
Q Consensus       212 ~~~~k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al  291 (312)
                      ...+...|..++..++|++|+..|.++++                  +.|....++.++|.++.+++++++|+..+.+++
T Consensus        65 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~------------------~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al  126 (148)
T 2dba_A           65 AVLHRNRAACHLKLEDYDKAETEASKAIE------------------KDGGDVKALYRRSQALEKLGRLDQAVLDLQRCV  126 (148)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHH------------------HTSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHccHHHHHHHHHHHHh------------------hCccCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            45577889999999999999999999999                  344456789999999999999999999999999


Q ss_pred             HcCCCchHHHHHHHHHhh
Q 021445          292 RDGDDNVKALFRQGQVSI  309 (312)
Q Consensus       292 ~l~p~~~Ka~~rrg~a~~  309 (312)
                      +++|++..++...+.+..
T Consensus       127 ~~~p~~~~~~~~l~~~~~  144 (148)
T 2dba_A          127 SLEPKNKVFQEALRNISG  144 (148)
T ss_dssp             HHCSSCHHHHHHHHHHHC
T ss_pred             HcCCCcHHHHHHHHHHHh
Confidence            999999999988877654

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A

Probab=98.54  E-value=6.7e-07  Score=67.36  Aligned_cols=88  Identities=15%  Similarity=0.085  Sum_probs=70.9

Q ss_pred             hhhhHhhhhhHHhhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHcCCHHHHHHHHHHHH
Q 021445          212 VDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAM  291 (312)
Q Consensus       212 ~~~~k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al  291 (312)
                      +..+...|..++..|+|++|+..|.+++......           ....+....++.++|.++.+++++++|+..+.+++
T Consensus        38 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~  106 (131)
T 1elr_A           38 MTYITNQAAVYFEKGDYNKCRELCEKAIEVGREN-----------REDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSL  106 (131)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHS-----------TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHhhcccc-----------chhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence            3456788999999999999999999999942210           00112237789999999999999999999999999


Q ss_pred             HcCCCchHHHHHHHHHhhhh
Q 021445          292 RDGDDNVKALFRQGQVSIIL  311 (312)
Q Consensus       292 ~l~p~~~Ka~~rrg~a~~~L  311 (312)
                      +++| +...+...+.++..+
T Consensus       107 ~~~~-~~~~~~~l~~~~~~~  125 (131)
T 1elr_A          107 AEHR-TPDVLKKCQQAEKIL  125 (131)
T ss_dssp             HHCC-CHHHHHHHHHHHHHH
T ss_pred             HhCC-CHHHHHHHHHHHHHH
Confidence            9998 688888888877654

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}

Probab=98.53  E-value=1e-07  Score=80.89  Aligned_cols=82  Identities=24%  Similarity=0.361  Sum_probs=73.9

Q ss_pred             hhhhhHhhhhhHHhhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHcCCHHHHHHHHHHH
Q 021445          211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA  290 (312)
Q Consensus       211 ~~~~~k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~a  290 (312)
                      .++.+...|+.++..|+|++|+..|+++++.                  . ....++.++|.++.+++++++|+..+.++
T Consensus         4 ~a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~------------------~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~a   64 (258)
T 3uq3_A            4 MADKEKAEGNKFYKARQFDEAIEHYNKAWEL------------------H-KDITYLNNRAAAEYEKGEYETAISTLNDA   64 (258)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------------------S-CCTHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhccHHHHHHHHHHHHHh------------------h-ccHHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence            5778999999999999999999999999994                  2 23568999999999999999999999999


Q ss_pred             HHcCCCc-------hHHHHHHHHHhhhh
Q 021445          291 MRDGDDN-------VKALFRQGQVSIIL  311 (312)
Q Consensus       291 l~l~p~~-------~Ka~~rrg~a~~~L  311 (312)
                      ++++|.+       +.+|+.+|.++..+
T Consensus        65 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~   92 (258)
T 3uq3_A           65 VEQGREMRADYKVISKSFARIGNAYHKL   92 (258)
T ss_dssp             HHHHHHTTCCHHHHHHHHHHHHHHHHHT
T ss_pred             HHhCcccccchHHHHHHHHHHHHHHHHc
Confidence            9999877       79999999998765

>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A

Probab=98.53  E-value=1.9e-07  Score=82.21  Aligned_cols=90  Identities=10%  Similarity=0.047  Sum_probs=76.1

Q ss_pred             hhhhhHhhhhhHHhhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHcCCHHHHHHHHHHH
Q 021445          211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA  290 (312)
Q Consensus       211 ~~~~~k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~a  290 (312)
                      .+..+...|..++..|+|++|+..|.+|++.+...+           ...+....+|.|+|.+|.++|+|++|+..+++|
T Consensus       154 ~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~-----------~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~a  222 (293)
T 3u3w_A          154 NLYIENAIANIYAENGYLKKGIDLFEQILKQLEALH-----------DNEEFDVKVRYNHAKALYLDSRYEESLYQVNKA  222 (293)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSS-----------CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcc-----------cchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence            455688999999999999999999999998764421           134566779999999999999999999999999


Q ss_pred             HHcCCCc------hHHHHHHHHHhhhh
Q 021445          291 MRDGDDN------VKALFRQGQVSIIL  311 (312)
Q Consensus       291 l~l~p~~------~Ka~~rrg~a~~~L  311 (312)
                      |++.+..      +.+|+.+|.+|..+
T Consensus       223 l~~~~~~~~~~~~~~~~~~lg~~~~~~  249 (293)
T 3u3w_A          223 IEISCRINSMALIGQLYYQRGECLRKL  249 (293)
T ss_dssp             HHHHHHTTBCTTHHHHHHHHHHHHHHT
T ss_pred             HHHHHHcCcHHHHHHHHHHHHHHHHHh
Confidence            9886544      78999999999865

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}

Probab=98.51  E-value=2.5e-07  Score=87.63  Aligned_cols=82  Identities=17%  Similarity=0.087  Sum_probs=74.2

Q ss_pred             hhhhHhhhhhHHhh--------hcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHH---HHHHHHhHHHHHHHHcCCH
Q 021445          212 VDSIKVFGNEHYKK--------QDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRK---TKSQIFTNSSACKLKLGDL  280 (312)
Q Consensus       212 ~~~~k~~Gn~~~~~--------~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~---~~~~~~~N~a~~~~kl~~~  280 (312)
                      +..+...|..++..        |+|++|+..|++|++                  +.|   ....+|.|+|.+|.++|+|
T Consensus       213 ~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~------------------~~p~~~~~~~~~~~lg~~~~~~g~~  274 (474)
T 4abn_A          213 GRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEK------------------VDRKASSNPDLHLNRATLHKYEESY  274 (474)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH------------------HCGGGGGCHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHH------------------hCCCcccCHHHHHHHHHHHHHcCCH
Confidence            34467888899888        999999999999999                  455   6788999999999999999


Q ss_pred             HHHHHHHHHHHHcCCCchHHHHHHHHHhhhh
Q 021445          281 KGALLDTEFAMRDGDDNVKALFRQGQVSIIL  311 (312)
Q Consensus       281 ~~Ai~~~~~al~l~p~~~Ka~~rrg~a~~~L  311 (312)
                      ++|++.+.+|++++|++..+++.++.++..+
T Consensus       275 ~~A~~~~~~al~l~p~~~~a~~~l~~~~~~l  305 (474)
T 4abn_A          275 GEALEGFSQAAALDPAWPEPQQREQQLLEFL  305 (474)
T ss_dssp             HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence            9999999999999999999999999998764

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}

Probab=98.50  E-value=3.1e-07  Score=82.73  Aligned_cols=82  Identities=15%  Similarity=0.125  Sum_probs=73.9

Q ss_pred             hhhhHhhhhhHHhhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHcCCHHHHHHHHHHHH
Q 021445          212 VDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAM  291 (312)
Q Consensus       212 ~~~~k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al  291 (312)
                      +..+...|..+.+.|+|++|+..|+++++                  +.|....++.++|.++.++|++++|+..+.+++
T Consensus       213 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~------------------~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al  274 (365)
T 4eqf_A          213 PDLQTGLGVLFHLSGEFNRAIDAFNAALT------------------VRPEDYSLWNRLGATLANGDRSEEAVEAYTRAL  274 (365)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHH------------------HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHH------------------hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            44567889999999999999999999999                  445556789999999999999999999999999


Q ss_pred             HcCCCchHHHHHHHHHhhhh
Q 021445          292 RDGDDNVKALFRQGQVSIIL  311 (312)
Q Consensus       292 ~l~p~~~Ka~~rrg~a~~~L  311 (312)
                      +++|+++.+|+.+|.+|..+
T Consensus       275 ~~~p~~~~~~~~l~~~~~~~  294 (365)
T 4eqf_A          275 EIQPGFIRSRYNLGISCINL  294 (365)
T ss_dssp             HHCTTCHHHHHHHHHHHHHH
T ss_pred             hcCCCchHHHHHHHHHHHHC
Confidence            99999999999999999764

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=98.49  E-value=6.8e-08  Score=95.74  Aligned_cols=98  Identities=12%  Similarity=0.007  Sum_probs=74.4

Q ss_pred             hhhHhhhhhHHhhhcHHHHHHHHHHHHHHhhhcc-----------ccCCCCc----hhhhHHHHHHHHHHhHHHHHHHHc
Q 021445          213 DSIKVFGNEHYKKQDYKMALRKYRKALRYLDICW-----------EKEGIDE----GKSSSLRKTKSQIFTNSSACKLKL  277 (312)
Q Consensus       213 ~~~k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~-----------~~~~~~~----~~~~~~~~~~~~~~~N~a~~~~kl  277 (312)
                      ..+...|..+++.|+|++|+..|++||++-....           .....++    +....++|....+|.|+|.++.++
T Consensus       468 ~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~~g~~~~~~~~~~al~~~P~~~~a~~~lg~~~~~~  547 (681)
T 2pzi_A          468 RLVWYRAVAELLTGDYDSATKHFTEVLDTFPGELAPKLALAATAELAGNTDEHKFYQTVWSTNDGVISAAFGLARARSAE  547 (681)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCCCTTCHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhCCchHHHHHHHHHHHHHc
Confidence            3457889999999999999999999998532210           0111111    112235566778899999999999


Q ss_pred             CCHHHHHHHHHHHHHcCCCchHHHHHHHHHhhh
Q 021445          278 GDLKGALLDTEFAMRDGDDNVKALFRQGQVSII  310 (312)
Q Consensus       278 ~~~~~Ai~~~~~al~l~p~~~Ka~~rrg~a~~~  310 (312)
                      |++++|+.++++|++++|++..|++.+|.+++.
T Consensus       548 g~~~~A~~~~~~al~l~P~~~~a~~~~~~~~~~  580 (681)
T 2pzi_A          548 GDRVGAVRTLDEVPPTSRHFTTARLTSAVTLLS  580 (681)
T ss_dssp             TCHHHHHHHHHTSCTTSTTHHHHHHHHHHHTC-
T ss_pred             CCHHHHHHHHHhhcccCcccHHHHHHHHHHHHc
Confidence            999999999999999999999999999998754

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}

Probab=98.49  E-value=3e-08  Score=80.35  Aligned_cols=81  Identities=14%  Similarity=0.078  Sum_probs=67.3

Q ss_pred             hhhhHhhhhhHHhhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHcCCHHHHHHHHHHHH
Q 021445          212 VDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAM  291 (312)
Q Consensus       212 ~~~~k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al  291 (312)
                      ...+...++.++..|+|++|+..|.+++.                  ..|....++.++|.+|+.+++|++|+..+.+++
T Consensus        10 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~------------------~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al   71 (177)
T 2e2e_A           10 YQRQRDPLHQFASQQNPEAQLQALQDKIR------------------ANPQNSEQWALLGEYYLWQNDYSNSLLAYRQAL   71 (177)
T ss_dssp             CCCSSTTTCCCC-----CCCCHHHHHHHH------------------HCCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHhhhhhhhhhccCHHHHHHHHHHHHH------------------hCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            45567778889999999999999999999                  445556789999999999999999999999999


Q ss_pred             HcCCCchHHHHHHHHH-hhh
Q 021445          292 RDGDDNVKALFRQGQV-SII  310 (312)
Q Consensus       292 ~l~p~~~Ka~~rrg~a-~~~  310 (312)
                      +++|.+..+++.+|.+ +..
T Consensus        72 ~~~p~~~~~~~~la~~l~~~   91 (177)
T 2e2e_A           72 QLRGENAELYAALATVLYYQ   91 (177)
T ss_dssp             HHHCSCHHHHHHHHHHHHHH
T ss_pred             HcCCCCHHHHHHHHHHHHHh
Confidence            9999999999999999 543

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}

Probab=98.47  E-value=3.5e-07  Score=68.61  Aligned_cols=79  Identities=16%  Similarity=0.093  Sum_probs=65.3

Q ss_pred             hhhhHhhhhhHHhhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHcCCHHHHHHHHHHHH
Q 021445          212 VDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAM  291 (312)
Q Consensus       212 ~~~~k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al  291 (312)
                      +..+...|..++..|+|++|+..|+++++                  +.|....++.++|.||.++|++++|+..+.+++
T Consensus        19 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~------------------~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al   80 (115)
T 2kat_A           19 MLLRFTLGKTYAEHEQFDAALPHLRAALD------------------FDPTYSVAWKWLGKTLQGQGDRAGARQAWESGL   80 (115)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHH------------------HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHH------------------HCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            45678899999999999999999999999                  455567789999999999999999999999999


Q ss_pred             HcCCCc--hHHHHHHHHHh
Q 021445          292 RDGDDN--VKALFRQGQVS  308 (312)
Q Consensus       292 ~l~p~~--~Ka~~rrg~a~  308 (312)
                      +++|.+  ..++.....++
T Consensus        81 ~~~~~~~~~~~~~~l~~~l   99 (115)
T 2kat_A           81 AAAQSRGDQQVVKELQVFL   99 (115)
T ss_dssp             HHHHHHTCHHHHHHHHHHH
T ss_pred             HhccccccHHHHHHHHHHH
Confidence            998853  34444444433

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=98.46  E-value=4.1e-07  Score=84.12  Aligned_cols=83  Identities=17%  Similarity=0.170  Sum_probs=75.7

Q ss_pred             hhhhhHhhhhhHHhhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHcCCHHHHHHHHHHH
Q 021445          211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA  290 (312)
Q Consensus       211 ~~~~~k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~a  290 (312)
                      .+..+...|..+++.|+|++|+..|+++++                  ..|....++.++|.|++++|++++|+..+.++
T Consensus        25 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~------------------~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a   86 (450)
T 2y4t_A           25 DVEKHLELGKKLLAAGQLADALSQFHAAVD------------------GDPDNYIAYYRRATVFLAMGKSKAALPDLTKV   86 (450)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH------------------HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHH------------------hCCccHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence            567789999999999999999999999998                  34455779999999999999999999999999


Q ss_pred             HHcCCCchHHHHHHHHHhhhh
Q 021445          291 MRDGDDNVKALFRQGQVSIIL  311 (312)
Q Consensus       291 l~l~p~~~Ka~~rrg~a~~~L  311 (312)
                      ++++|.+..+++.+|.+|..+
T Consensus        87 l~~~p~~~~~~~~l~~~~~~~  107 (450)
T 2y4t_A           87 IQLKMDFTAARLQRGHLLLKQ  107 (450)
T ss_dssp             HHHCTTCHHHHHHHHHHHHHT
T ss_pred             HhcCCCcHHHHHHHHHHHHHc
Confidence            999999999999999998764

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}

Probab=98.46  E-value=6.4e-07  Score=68.96  Aligned_cols=74  Identities=11%  Similarity=0.019  Sum_probs=61.6

Q ss_pred             hhhhHhhhhhHHhhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHcCCHHHHHHHHHHHH
Q 021445          212 VDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAM  291 (312)
Q Consensus       212 ~~~~k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al  291 (312)
                      +..+.+.|..+++.|+|++|+..|++||++-...           .........+|.|+|.++.++++|++|++.+.++|
T Consensus        42 ~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~-----------~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~kal  110 (127)
T 4gcn_A           42 ITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRET-----------RADYKLIAKAMSRAGNAFQKQNDLSLAVQWFHRSL  110 (127)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT-----------TCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCccc-----------chhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            4567899999999999999999999999953211           00123456799999999999999999999999999


Q ss_pred             HcCCC
Q 021445          292 RDGDD  296 (312)
Q Consensus       292 ~l~p~  296 (312)
                      .++|+
T Consensus       111 ~~~~~  115 (127)
T 4gcn_A          111 SEFRD  115 (127)
T ss_dssp             HHSCC
T ss_pred             hhCcC
Confidence            99875

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}

Probab=98.46  E-value=6.5e-07  Score=67.95  Aligned_cols=79  Identities=10%  Similarity=0.116  Sum_probs=65.3

Q ss_pred             hhhHhhhhhHHhhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHcCCHHHHHHHHHHHHH
Q 021445          213 DSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMR  292 (312)
Q Consensus       213 ~~~k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~  292 (312)
                      ..+...|..+++.|+|++|+..|.+++.....               .+....++.++|.|+.++|++++|+..+++++.
T Consensus        40 ~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~---------------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~  104 (129)
T 2xev_A           40 NALYWLGESYYATRNFQLAEAQFRDLVSRYPT---------------HDKAAGGLLKLGLSQYGEGKNTEAQQTLQQVAT  104 (129)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---------------STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhccHHHHHHHHHHHHHHCCC---------------CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            46778999999999999999999999983211               011266899999999999999999999999999


Q ss_pred             cCCCchHHHHHHHH
Q 021445          293 DGDDNVKALFRQGQ  306 (312)
Q Consensus       293 l~p~~~Ka~~rrg~  306 (312)
                      ..|++..+..-+..
T Consensus       105 ~~p~~~~~~~a~~~  118 (129)
T 2xev_A          105 QYPGSDAARVAQER  118 (129)
T ss_dssp             HSTTSHHHHHHHHH
T ss_pred             HCCCChHHHHHHHH
Confidence            99998876655443

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*

Probab=98.46  E-value=3e-07  Score=88.78  Aligned_cols=81  Identities=6%  Similarity=-0.030  Sum_probs=52.8

Q ss_pred             hhhhHhhhhhHHhhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHcCCHHHHHHHHHHHH
Q 021445          212 VDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAM  291 (312)
Q Consensus       212 ~~~~k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al  291 (312)
                      +..+...|..+++.|+|++|+..|++|++.                  .|....++.|+|.+|.++|++++|++.+++++
T Consensus        23 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~------------------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al   84 (568)
T 2vsy_A           23 FVAWLMLADAELGMGDTTAGEMAVQRGLAL------------------HPGHPEAVARLGRVRWTQQRHAEAAVLLQQAS   84 (568)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHTT------------------STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------------------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence            456778888888888888888888888872                  23334455555555555555555555555555


Q ss_pred             HcCCCchHHHHHHHHHhhh
Q 021445          292 RDGDDNVKALFRQGQVSII  310 (312)
Q Consensus       292 ~l~p~~~Ka~~rrg~a~~~  310 (312)
                      +++|++..+|+.+|.+|..
T Consensus        85 ~~~p~~~~~~~~la~~~~~  103 (568)
T 2vsy_A           85 DAAPEHPGIALWLGHALED  103 (568)
T ss_dssp             HHCTTCHHHHHHHHHHHHH
T ss_pred             hcCCCCHHHHHHHHHHHHH
Confidence            5555555555555555543

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A

Probab=98.46  E-value=3.2e-07  Score=82.39  Aligned_cols=83  Identities=11%  Similarity=-0.035  Sum_probs=74.7

Q ss_pred             hhhhhHhhhhhHHhhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHcCCHHHHHHHHHHH
Q 021445          211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA  290 (312)
Q Consensus       211 ~~~~~k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~a  290 (312)
                      .+..+...|..+++.|+|++|+..|+++++                  ..|....++.++|.|+.++|++++|+..+.++
T Consensus        63 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~------------------~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a  124 (368)
T 1fch_A           63 DHPQPFEEGLRRLQEGDLPNAVLLFEAAVQ------------------QDPKHMEAWQYLGTTQAENEQELLAISALRRC  124 (368)
T ss_dssp             TCSSHHHHHHHHHHTTCHHHHHHHHHHHHH------------------SCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHCCCHHHHHHHHHHHHH------------------hCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHH
Confidence            355678999999999999999999999998                  33445678999999999999999999999999


Q ss_pred             HHcCCCchHHHHHHHHHhhhh
Q 021445          291 MRDGDDNVKALFRQGQVSIIL  311 (312)
Q Consensus       291 l~l~p~~~Ka~~rrg~a~~~L  311 (312)
                      ++++|.+..+++.+|.+|..+
T Consensus       125 l~~~~~~~~~~~~l~~~~~~~  145 (368)
T 1fch_A          125 LELKPDNQTALMALAVSFTNE  145 (368)
T ss_dssp             HHHCTTCHHHHHHHHHHHHHT
T ss_pred             HhcCCCCHHHHHHHHHHHHHc
Confidence            999999999999999998764

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}

Probab=98.45  E-value=2.4e-07  Score=79.58  Aligned_cols=79  Identities=16%  Similarity=0.270  Sum_probs=54.2

Q ss_pred             hhhHhhhhhHHhhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHcCCHHHHHHHHHHHHH
Q 021445          213 DSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMR  292 (312)
Q Consensus       213 ~~~k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~  292 (312)
                      ..+...|..+...|+|++|+..|.++++                  +.|....++.++|.+|.++|++++|+..++++++
T Consensus        75 ~~~~~lg~~~~~~~~~~~A~~~~~~a~~------------------~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~  136 (272)
T 3u4t_A           75 ADFEYYGKILMKKGQDSLAIQQYQAAVD------------------RDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIR  136 (272)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHH------------------HSTTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCC
T ss_pred             HHHHHHHHHHHHcccHHHHHHHHHHHHh------------------cCcccHHHHHHHHHHHHHccCHHHHHHHHHHHhh
Confidence            3356677777777777777777777777                  3333445677777777777777777777777777


Q ss_pred             cCCCchHHHHHHH-HHhh
Q 021445          293 DGDDNVKALFRQG-QVSI  309 (312)
Q Consensus       293 l~p~~~Ka~~rrg-~a~~  309 (312)
                      ++|.+..+|+.+| .+|.
T Consensus       137 ~~~~~~~~~~~l~~~~~~  154 (272)
T 3u4t_A          137 PTTTDPKVFYELGQAYYY  154 (272)
T ss_dssp             SSCCCHHHHHHHHHHHHH
T ss_pred             cCCCcHHHHHHHHHHHHH
Confidence            7777777777777 5543

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}

Probab=98.44  E-value=6.9e-07  Score=73.99  Aligned_cols=83  Identities=14%  Similarity=-0.003  Sum_probs=61.1

Q ss_pred             hhhhhHhhhhhHHhhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHcCCHHHHHHHHHHH
Q 021445          211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA  290 (312)
Q Consensus       211 ~~~~~k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~a  290 (312)
                      .+..+...|..++..|++++|+..|.++++.                  .|....++.++|.++..+|++++|++.+.++
T Consensus         7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~------------------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a   68 (225)
T 2vq2_A            7 VSNIKTQLAMEYMRGQDYRQATASIEDALKS------------------DPKNELAWLVRAEIYQYLKVNDKAQESFRQA   68 (225)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------------------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh------------------CccchHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence            4556778888888888888888888888873                  2333456777777777777777777777777


Q ss_pred             HHcCCCchHHHHHHHHHhhhh
Q 021445          291 MRDGDDNVKALFRQGQVSIIL  311 (312)
Q Consensus       291 l~l~p~~~Ka~~rrg~a~~~L  311 (312)
                      ++++|.+..+++.+|.++..+
T Consensus        69 ~~~~~~~~~~~~~l~~~~~~~   89 (225)
T 2vq2_A           69 LSIKPDSAEINNNYGWFLCGR   89 (225)
T ss_dssp             HHHCTTCHHHHHHHHHHHHTT
T ss_pred             HHhCCCChHHHHHHHHHHHHh
Confidence            777777777777777776543

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A

Probab=98.44  E-value=8.5e-07  Score=66.77  Aligned_cols=75  Identities=27%  Similarity=0.351  Sum_probs=52.1

Q ss_pred             hhhHHhhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHcCCHHHHHHHHHHHHHcCCCch
Q 021445          219 GNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNV  298 (312)
Q Consensus       219 Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~l~p~~~  298 (312)
                      |..++..|++++|+..|.+++.                  ..+....++.+++.++.+++++++|+..+.++++..|.+.
T Consensus        42 a~~~~~~~~~~~A~~~~~~~~~------------------~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~  103 (136)
T 2fo7_A           42 GNAYYKQGDYDEAIEYYQKALE------------------LDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSA  103 (136)
T ss_dssp             HHHHHHHTCHHHHHHHHHHHHH------------------HCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCH
T ss_pred             HHHHHHhcCHHHHHHHHHHHHH------------------HCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCh
Confidence            4444455555555555555554                  2233355778888888888888888888888888888888


Q ss_pred             HHHHHHHHHhhhh
Q 021445          299 KALFRQGQVSIIL  311 (312)
Q Consensus       299 Ka~~rrg~a~~~L  311 (312)
                      .+++..|.++..+
T Consensus       104 ~~~~~la~~~~~~  116 (136)
T 2fo7_A          104 EAWYNLGNAYYKQ  116 (136)
T ss_dssp             HHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHH
Confidence            8888888877653

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A

Probab=98.44  E-value=5.4e-07  Score=80.83  Aligned_cols=82  Identities=16%  Similarity=0.134  Sum_probs=72.2

Q ss_pred             hhhhHhhhhhHHhhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHcCCHHHHHHHHHHHH
Q 021445          212 VDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAM  291 (312)
Q Consensus       212 ~~~~k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al  291 (312)
                      +..+...|..+++.|+|++|+..|++++.                  +.|....++.++|.++.++|++++|+..+++++
T Consensus       217 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~------------------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al  278 (368)
T 1fch_A          217 PDVQCGLGVLFNLSGEYDKAVDCFTAALS------------------VRPNDYLLWNKLGATLANGNQSEEAVAAYRRAL  278 (368)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHH------------------HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHH------------------hCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            44567788999999999999999999998                  344456789999999999999999999999999


Q ss_pred             HcCCCchHHHHHHHHHhhhh
Q 021445          292 RDGDDNVKALFRQGQVSIIL  311 (312)
Q Consensus       292 ~l~p~~~Ka~~rrg~a~~~L  311 (312)
                      +++|.+..+++.+|.+|..+
T Consensus       279 ~~~~~~~~~~~~l~~~~~~~  298 (368)
T 1fch_A          279 ELQPGYIRSRYNLGISCINL  298 (368)
T ss_dssp             HHCTTCHHHHHHHHHHHHHH
T ss_pred             HhCCCcHHHHHHHHHHHHHC
Confidence            99999999999999998764

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}

Probab=98.43  E-value=1.2e-07  Score=85.86  Aligned_cols=78  Identities=14%  Similarity=0.075  Sum_probs=56.4

Q ss_pred             hhHhhhhhHHhhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHcCCHHHHHHHHHHHHHc
Q 021445          214 SIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRD  293 (312)
Q Consensus       214 ~~k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~l  293 (312)
                      .+.+.|..+++.++|++|+..|++||+                  +.|....+|.|+|.+|+.+++|++|+.++.+++++
T Consensus       232 ~~~nla~~~~~~g~~~~A~~~~~~al~------------------~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l  293 (338)
T 2if4_A          232 CHLNIAACLIKLKRYDEAIGHCNIVLT------------------EEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKY  293 (338)
T ss_dssp             HHHHHHHHHHTTTCCHHHHHHHHHHHH------------------HCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC-
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHH------------------hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            456889999999999999999999999                  55666789999999999999999999999999999


Q ss_pred             CCCchHHHHHHHHHhh
Q 021445          294 GDDNVKALFRQGQVSI  309 (312)
Q Consensus       294 ~p~~~Ka~~rrg~a~~  309 (312)
                      +|++..++..++.+..
T Consensus       294 ~p~~~~a~~~L~~l~~  309 (338)
T 2if4_A          294 APDDKAIRRELRALAE  309 (338)
T ss_dssp             ----------------
T ss_pred             CCCCHHHHHHHHHHHH
Confidence            9999999888776643

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=98.42  E-value=1.1e-06  Score=77.35  Aligned_cols=88  Identities=14%  Similarity=0.056  Sum_probs=70.8

Q ss_pred             hhhhHhhhhhHHhh-hcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHcCCHHHHHHHHHHH
Q 021445          212 VDSIKVFGNEHYKK-QDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA  290 (312)
Q Consensus       212 ~~~~k~~Gn~~~~~-~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~a  290 (312)
                      +..+.+.|..+... |+|++|+..|++||++.....            .......++.|+|.++.++|+|++|+..++++
T Consensus       117 a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~------------~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a  184 (292)
T 1qqe_A          117 ANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQ------------SVALSNKCFIKCADLKALDGQYIEASDIYSKL  184 (292)
T ss_dssp             HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTT------------CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCC------------ChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence            45677888888886 999999999999999643210            01223568999999999999999999999999


Q ss_pred             HHcCCCchH-------HHHHHHHHhhhh
Q 021445          291 MRDGDDNVK-------ALFRQGQVSIIL  311 (312)
Q Consensus       291 l~l~p~~~K-------a~~rrg~a~~~L  311 (312)
                      +++.|.+..       +|+++|.++..+
T Consensus       185 l~~~~~~~~~~~~~~~~~~~lg~~~~~~  212 (292)
T 1qqe_A          185 IKSSMGNRLSQWSLKDYFLKKGLCQLAA  212 (292)
T ss_dssp             HHTTSSCTTTGGGHHHHHHHHHHHHHHT
T ss_pred             HHHHhcCCcccHHHHHHHHHHHHHHHHc
Confidence            999987643       688889888764

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3

Probab=98.42  E-value=3.6e-07  Score=86.75  Aligned_cols=78  Identities=18%  Similarity=0.180  Sum_probs=71.6

Q ss_pred             hhhhHhhhhhHHhhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHcCCHHHHHHHHHHHH
Q 021445          212 VDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAM  291 (312)
Q Consensus       212 ~~~~k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al  291 (312)
                      +..+...|..+++.|+|++|+..|++|++                  +.|....++.|+|.+|.++|+|++|++.+.+|+
T Consensus        40 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~------------------l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al  101 (477)
T 1wao_1           40 AIYYGNRSLAYLRTECYGYALGDATRAIE------------------LDKKYIKGYYRRAASNMALGKFRAALRDYETVV  101 (477)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHH------------------SCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHH------------------hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            45678899999999999999999999999                  445567799999999999999999999999999


Q ss_pred             HcCCCchHHHHHHHHH
Q 021445          292 RDGDDNVKALFRQGQV  307 (312)
Q Consensus       292 ~l~p~~~Ka~~rrg~a  307 (312)
                      +++|++..+++..+.+
T Consensus       102 ~~~p~~~~~~~~l~~~  117 (477)
T 1wao_1          102 KVKPHDKDAKMKYQEC  117 (477)
T ss_dssp             HHSTTCTTHHHHHHHH
T ss_pred             HhCCCCHHHHHHHHHH
Confidence            9999999999999888

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=98.42  E-value=4.2e-07  Score=80.46  Aligned_cols=52  Identities=15%  Similarity=0.149  Sum_probs=47.0

Q ss_pred             HHHHHHHHhHHHHHHHHcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHhhhh
Q 021445          260 RKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQVSIIL  311 (312)
Q Consensus       260 ~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~l~p~~~Ka~~rrg~a~~~L  311 (312)
                      .|....++.|+|.|++++|+|++|+..+.++|+++|+++.+|+.+|.++..+
T Consensus       196 ~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~l~~l~~~~~~~  247 (291)
T 3mkr_A          196 CSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLINLVVLSQHL  247 (291)
T ss_dssp             SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred             CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence            3445678999999999999999999999999999999999999999888654

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A

Probab=98.42  E-value=9.9e-07  Score=66.39  Aligned_cols=81  Identities=23%  Similarity=0.307  Sum_probs=70.4

Q ss_pred             hhhHhhhhhHHhhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHcCCHHHHHHHHHHHHH
Q 021445          213 DSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMR  292 (312)
Q Consensus       213 ~~~k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~  292 (312)
                      ..+...|..++..|++++|+..|.++++.                  .+....++.+++.++..++++++|+..+.+++.
T Consensus         2 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~------------------~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~   63 (136)
T 2fo7_A            2 EAWYNLGNAYYKQGDYDEAIEYYQKALEL------------------DPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALE   63 (136)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHH------------------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHcCcHHHHHHHHHHHHHc------------------CCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence            34667889999999999999999999983                  233456788999999999999999999999999


Q ss_pred             cCCCchHHHHHHHHHhhhh
Q 021445          293 DGDDNVKALFRQGQVSIIL  311 (312)
Q Consensus       293 l~p~~~Ka~~rrg~a~~~L  311 (312)
                      ++|.+..+++..|.++..+
T Consensus        64 ~~~~~~~~~~~l~~~~~~~   82 (136)
T 2fo7_A           64 LDPRSAEAWYNLGNAYYKQ   82 (136)
T ss_dssp             HCTTCHHHHHHHHHHHHTT
T ss_pred             HCCCchHHHHHHHHHHHHh
Confidence            9999999999999988654

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}

Probab=98.41  E-value=3.1e-07  Score=86.96  Aligned_cols=82  Identities=18%  Similarity=0.121  Sum_probs=75.1

Q ss_pred             hhhhhHhhhhhHHhhhcH-HHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHcCCHHHHHHHHHH
Q 021445          211 AVDSIKVFGNEHYKKQDY-KMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEF  289 (312)
Q Consensus       211 ~~~~~k~~Gn~~~~~~~y-~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~  289 (312)
                      .+..+...|..++..++| ++|+..|++|++                  +.|....+|.++|.+|+++|+|++|+..+.+
T Consensus       101 ~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~------------------~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~  162 (474)
T 4abn_A          101 EAQALMLKGKALNVTPDYSPEAEVLLSKAVK------------------LEPELVEAWNQLGEVYWKKGDVTSAHTCFSG  162 (474)
T ss_dssp             CHHHHHHHHHHHTSSSSCCHHHHHHHHHHHH------------------HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHhccccHHHHHHHHHHHHh------------------hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            456788999999999999 999999999999                  5566678999999999999999999999999


Q ss_pred             HHHcCCCchHHHHHHHHHhhhh
Q 021445          290 AMRDGDDNVKALFRQGQVSIIL  311 (312)
Q Consensus       290 al~l~p~~~Ka~~rrg~a~~~L  311 (312)
                      +|+++|+ ..+|+.+|.+|..+
T Consensus       163 al~~~p~-~~~~~~lg~~~~~~  183 (474)
T 4abn_A          163 ALTHCKN-KVSLQNLSMVLRQL  183 (474)
T ss_dssp             HHTTCCC-HHHHHHHHHHHTTC
T ss_pred             HHhhCCC-HHHHHHHHHHHHHh
Confidence            9999999 79999999998764

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A

Probab=98.40  E-value=1.1e-06  Score=70.26  Aligned_cols=48  Identities=10%  Similarity=-0.078  Sum_probs=34.0

Q ss_pred             HHHHHhHHHHHHHHcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHhhh
Q 021445          263 KSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQVSII  310 (312)
Q Consensus       263 ~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~l~p~~~Ka~~rrg~a~~~  310 (312)
                      ...++.++|.++.++|++++|+..+.++++.+|.+..+++..|.++..
T Consensus       109 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~  156 (186)
T 3as5_A          109 NFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQ  156 (186)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHH
Confidence            345667777777777777777777777777777777777777776654

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A

Probab=98.40  E-value=1e-06  Score=70.37  Aligned_cols=82  Identities=15%  Similarity=0.012  Sum_probs=71.2

Q ss_pred             hhhhHhhhhhHHhhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHcCCHHHHHHHHHHHH
Q 021445          212 VDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAM  291 (312)
Q Consensus       212 ~~~~k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al  291 (312)
                      ...+...|..++..|++++|+..|.++++.                  .|....++.++|.++.+++++++|+..+.+++
T Consensus        42 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~------------------~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~  103 (186)
T 3as5_A           42 VDVALHLGIAYVKTGAVDRGTELLERSLAD------------------APDNVKVATVLGLTYVQVQKYDLAVPLLIKVA  103 (186)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------------------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHHHHhc------------------CCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence            445778888899999999999999999983                  34446688999999999999999999999999


Q ss_pred             HcCCCchHHHHHHHHHhhhh
Q 021445          292 RDGDDNVKALFRQGQVSIIL  311 (312)
Q Consensus       292 ~l~p~~~Ka~~rrg~a~~~L  311 (312)
                      +++|.+..+++..|.++..+
T Consensus       104 ~~~~~~~~~~~~~a~~~~~~  123 (186)
T 3as5_A          104 EANPINFNVRFRLGVALDNL  123 (186)
T ss_dssp             HHCTTCHHHHHHHHHHHHHT
T ss_pred             hcCcHhHHHHHHHHHHHHHc
Confidence            99999999999999988764

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}

Probab=98.40  E-value=4.2e-07  Score=68.12  Aligned_cols=64  Identities=9%  Similarity=-0.086  Sum_probs=57.4

Q ss_pred             HHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHhh
Q 021445          230 MALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQVSI  309 (312)
Q Consensus       230 ~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~l~p~~~Ka~~rrg~a~~  309 (312)
                      +|+..|.++++                  ..|....++.++|.+++++|+|++|+..+.++++++|.+..+|+.+|.+|.
T Consensus         3 ~a~~~~~~al~------------------~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~   64 (115)
T 2kat_A            3 AITERLEAMLA------------------QGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQ   64 (115)
T ss_dssp             CHHHHHHHHHT------------------TTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHH------------------hCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHH
Confidence            57888999998                  344456799999999999999999999999999999999999999999987


Q ss_pred             hh
Q 021445          310 IL  311 (312)
Q Consensus       310 ~L  311 (312)
                      .+
T Consensus        65 ~~   66 (115)
T 2kat_A           65 GQ   66 (115)
T ss_dssp             HH
T ss_pred             Hc
Confidence            64

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*

Probab=98.40  E-value=4.9e-07  Score=69.43  Aligned_cols=78  Identities=15%  Similarity=0.053  Sum_probs=65.8

Q ss_pred             hhhhHhhhhhHHhhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHcCCHHHHHHHHHHHH
Q 021445          212 VDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAM  291 (312)
Q Consensus       212 ~~~~k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al  291 (312)
                      +..+...|..++..|+|++|+..|.++++                  +.|....++.++|.|+.++|++++|+..+.+++
T Consensus        43 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~------------------~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~  104 (137)
T 3q49_B           43 AVYYTNRALCYLKMQQPEQALADCRRALE------------------LDGQSVKAHFFLGQCQLEMESYDEAIANLQRAY  104 (137)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHH------------------HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHH------------------hCchhHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence            45578899999999999999999999999                  455567799999999999999999999999999


Q ss_pred             HcCCC-----chHHHHHHHHH
Q 021445          292 RDGDD-----NVKALFRQGQV  307 (312)
Q Consensus       292 ~l~p~-----~~Ka~~rrg~a  307 (312)
                      +++|+     +....-....+
T Consensus       105 ~~~p~~~~~~~~~~~~~l~~~  125 (137)
T 3q49_B          105 SLAKEQRLNFGDDIPSALRIA  125 (137)
T ss_dssp             HHHHHTTCCCTTHHHHHHHHH
T ss_pred             HHChhHHHHHHHHHHHHHHHH
Confidence            99987     55444444433

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*

Probab=98.37  E-value=8.3e-07  Score=85.59  Aligned_cols=82  Identities=11%  Similarity=-0.060  Sum_probs=74.7

Q ss_pred             hhhhHhhhhhHHhhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHcCCHHHHHHHHHHHH
Q 021445          212 VDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAM  291 (312)
Q Consensus       212 ~~~~k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al  291 (312)
                      +..+...|..++..|+|++|+..|++|++                  +.|....++.|+|.+|.++|++++|++.+++++
T Consensus        57 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~------------------~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al  118 (568)
T 2vsy_A           57 PEAVARLGRVRWTQQRHAEAAVLLQQASD------------------AAPEHPGIALWLGHALEDAGQAEAAAAAYTRAH  118 (568)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHH------------------HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHh------------------cCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            44567889999999999999999999999                  445567799999999999999999999999999


Q ss_pred             HcCCCchHHHHHHHHHhhhh
Q 021445          292 RDGDDNVKALFRQGQVSIIL  311 (312)
Q Consensus       292 ~l~p~~~Ka~~rrg~a~~~L  311 (312)
                      +++|++..+++.+|.++..+
T Consensus       119 ~~~p~~~~~~~~l~~~~~~~  138 (568)
T 2vsy_A          119 QLLPEEPYITAQLLNWRRRL  138 (568)
T ss_dssp             HHCTTCHHHHHHHHHHHHHT
T ss_pred             HhCCCCHHHHHHHHHHHHHh
Confidence            99999999999999998765

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}

Probab=98.36  E-value=5.9e-07  Score=78.98  Aligned_cols=80  Identities=18%  Similarity=0.147  Sum_probs=72.8

Q ss_pred             hhhhHhhhhhHHhhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHcCCHHHHHHHHHHHH
Q 021445          212 VDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAM  291 (312)
Q Consensus       212 ~~~~k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al  291 (312)
                      +..+...|..+++.|++++|+..|+++++                  +.|....++.++|.++.++|++++|++.+.+++
T Consensus       236 ~~~~~~la~~~~~~g~~~~A~~~~~~a~~------------------~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al  297 (330)
T 3hym_B          236 EPLLNNLGHVCRKLKKYAEALDYHRQALV------------------LIPQNASTYSAIGYIHSLMGNFENAVDYFHTAL  297 (330)
T ss_dssp             CHHHHHHHHHHHHTTCHHHHHHHHHHHHH------------------HSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTT
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHh------------------hCccchHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence            44677889999999999999999999999                  344456789999999999999999999999999


Q ss_pred             HcCCCchHHHHHHHHHhh
Q 021445          292 RDGDDNVKALFRQGQVSI  309 (312)
Q Consensus       292 ~l~p~~~Ka~~rrg~a~~  309 (312)
                      +++|++..+++.+|.++.
T Consensus       298 ~~~p~~~~~~~~l~~~~~  315 (330)
T 3hym_B          298 GLRRDDTFSVTMLGHCIE  315 (330)
T ss_dssp             TTCSCCHHHHHHHHHHHH
T ss_pred             ccCCCchHHHHHHHHHHH
Confidence            999999999999999984

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}

Probab=98.35  E-value=8.8e-07  Score=77.95  Aligned_cols=90  Identities=11%  Similarity=0.062  Sum_probs=73.0

Q ss_pred             hhhhhHhhhhhHHhhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHcCCHHHHHHHHHHH
Q 021445          211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA  290 (312)
Q Consensus       211 ~~~~~k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~a  290 (312)
                      .+..+...|..++..|+|++|+..|.+|+++....+     +      .......++.|+|.+|.++|+|++|+..++++
T Consensus       154 ~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~-----~------~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~ka  222 (293)
T 2qfc_A          154 NLYIENAIANIYAENGYLKKGIDLFEQILKQLEALH-----D------NEEFDVKVRYNHAKALYLDSRYEESLYQVNKA  222 (293)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSC-----C------CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcC-----c------cccchHHHHHhHHHHHHHHhhHHHHHHHHHHH
Confidence            456788999999999999999999999998654321     0      11223478999999999999999999999999


Q ss_pred             HHcCCC------chHHHHHHHHHhhhh
Q 021445          291 MRDGDD------NVKALFRQGQVSIIL  311 (312)
Q Consensus       291 l~l~p~------~~Ka~~rrg~a~~~L  311 (312)
                      +++.+.      .+.+|+..|.+|..+
T Consensus       223 l~~~~~~~~~~~~~~~~~~lg~~y~~~  249 (293)
T 2qfc_A          223 IEISCRINSMALIGQLYYQRGECLRKL  249 (293)
T ss_dssp             HHHHHHTTBCSSHHHHHHHHHHHHHHT
T ss_pred             HHHHHhcCcHHHHHHHHHHHHHHHHHc
Confidence            987643      278999999998765

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A

Probab=98.35  E-value=1.3e-06  Score=76.63  Aligned_cols=83  Identities=6%  Similarity=-0.078  Sum_probs=74.7

Q ss_pred             hhhhhHhhhhhHHhhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHcCCHHHHHHHHHHH
Q 021445          211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA  290 (312)
Q Consensus       211 ~~~~~k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~a  290 (312)
                      .+..+...|..++..|+|++|+..|+++++                  ..|....++.++|.++.++|++++|+..+.++
T Consensus        20 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~------------------~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a   81 (327)
T 3cv0_A           20 YHENPMEEGLSMLKLANLAEAALAFEAVCQ------------------AAPEREEAWRSLGLTQAENEKDGLAIIALNHA   81 (327)
T ss_dssp             GSSCHHHHHHHHHHTTCHHHHHHHHHHHHH------------------HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHhccHHHHHHHHHHHHH------------------hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            456688999999999999999999999998                  34445678899999999999999999999999


Q ss_pred             HHcCCCchHHHHHHHHHhhhh
Q 021445          291 MRDGDDNVKALFRQGQVSIIL  311 (312)
Q Consensus       291 l~l~p~~~Ka~~rrg~a~~~L  311 (312)
                      ++++|.+..+++.+|.++..+
T Consensus        82 ~~~~~~~~~~~~~la~~~~~~  102 (327)
T 3cv0_A           82 RMLDPKDIAVHAALAVSHTNE  102 (327)
T ss_dssp             HHHCTTCHHHHHHHHHHHHHT
T ss_pred             HhcCcCCHHHHHHHHHHHHHc
Confidence            999999999999999998654

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1

Probab=98.34  E-value=1.6e-06  Score=72.87  Aligned_cols=80  Identities=21%  Similarity=0.154  Sum_probs=47.3

Q ss_pred             hhhhHhhhhhHHhhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHcCCHHHHHHHHHHHH
Q 021445          212 VDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAM  291 (312)
Q Consensus       212 ~~~~k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al  291 (312)
                      +..+...|..+++.|++++|+..|.++++.-                  +....++.++|.++.++|++++|+..+.+++
T Consensus        57 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~------------------~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~  118 (243)
T 2q7f_A           57 AIPYINFANLLSSVNELERALAFYDKALELD------------------SSAATAYYGAGNVYVVKEMYKEAKDMFEKAL  118 (243)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC------------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC------------------CcchHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence            4556778888888889999999888888732                  2223344444444444444444444444444


Q ss_pred             HcCCCchHHHHHHHHHhh
Q 021445          292 RDGDDNVKALFRQGQVSI  309 (312)
Q Consensus       292 ~l~p~~~Ka~~rrg~a~~  309 (312)
                      +++|.+..+++.+|.++.
T Consensus       119 ~~~~~~~~~~~~~a~~~~  136 (243)
T 2q7f_A          119 RAGMENGDLFYMLGTVLV  136 (243)
T ss_dssp             HHTCCSHHHHHHHHHHHH
T ss_pred             HhCCCCHHHHHHHHHHHH
Confidence            444444444444444443

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}

Probab=98.34  E-value=2.4e-06  Score=75.73  Aligned_cols=83  Identities=17%  Similarity=0.107  Sum_probs=62.3

Q ss_pred             hHhhhhhHHhhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 021445          215 IKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDG  294 (312)
Q Consensus       215 ~k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~l~  294 (312)
                      ....|..+++.|+|++|+..|+++++....              .......++.++|.++.++|++++|+..++++++++
T Consensus       237 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~--------------~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~  302 (359)
T 3ieg_A          237 LIESAEELIRDGRYTDATSKYESVMKTEPS--------------VAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQME  302 (359)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCCS--------------SHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhcCCC--------------chHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Confidence            445688899999999999999999984211              122334567778888888888888888888888888


Q ss_pred             CCchHHHHHHHHHhhhh
Q 021445          295 DDNVKALFRQGQVSIIL  311 (312)
Q Consensus       295 p~~~Ka~~rrg~a~~~L  311 (312)
                      |+++.+|+.+|.++..+
T Consensus       303 ~~~~~~~~~~~~~~~~~  319 (359)
T 3ieg_A          303 PDNVNALKDRAEAYLIE  319 (359)
T ss_dssp             TTCHHHHHHHHHHHHHT
T ss_pred             cccHHHHHHHHHHHHHc
Confidence            88888888888877654

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A

Probab=98.33  E-value=8.9e-07  Score=75.18  Aligned_cols=82  Identities=17%  Similarity=0.061  Sum_probs=52.1

Q ss_pred             hhhhhHhhhhhHHhhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHcCCHHHHHHHHHHH
Q 021445          211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA  290 (312)
Q Consensus       211 ~~~~~k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~a  290 (312)
                      .+..+...|..++..|+|++|+..|.++++.                  .+....++.++|.++.+++++++|++.+.++
T Consensus        36 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~------------------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a   97 (252)
T 2ho1_A           36 ARDAYIQLGLGYLQRGNTEQAKVPLRKALEI------------------DPSSADAHAALAVVFQTEMEPKLADEEYRKA   97 (252)
T ss_dssp             HHHHHHHHHHHHHHTTCTGGGHHHHHHHHHH------------------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCChHHHHHHHHHHHhc------------------CCChHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            3566777888888888888888888888773                  2223345555666666666666666666666


Q ss_pred             HHcCCCchHHHHHHHHHhhh
Q 021445          291 MRDGDDNVKALFRQGQVSII  310 (312)
Q Consensus       291 l~l~p~~~Ka~~rrg~a~~~  310 (312)
                      ++++|.+..+++.+|.+|..
T Consensus        98 ~~~~~~~~~~~~~la~~~~~  117 (252)
T 2ho1_A           98 LASDSRNARVLNNYGGFLYE  117 (252)
T ss_dssp             HHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHCcCcHHHHHHHHHHHHH
Confidence            66666555555555555543

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1

Probab=98.33  E-value=1.6e-06  Score=72.79  Aligned_cols=80  Identities=25%  Similarity=0.186  Sum_probs=48.3

Q ss_pred             hhhhHhhhhhHHhhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHcCCHHHHHHHHHHHH
Q 021445          212 VDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAM  291 (312)
Q Consensus       212 ~~~~k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al  291 (312)
                      ...+...|..++..|++++|+..|.++++..                  +....++.++|.+++++|++++|+..+.+++
T Consensus        91 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~------------------~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~  152 (243)
T 2q7f_A           91 ATAYYGAGNVYVVKEMYKEAKDMFEKALRAG------------------MENGDLFYMLGTVLVKLEQPKLALPYLQRAV  152 (243)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT------------------CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHhccHHHHHHHHHHHHHhC------------------CCCHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence            3445667778888888888888888888732                  1123345555555555555555555555555


Q ss_pred             HcCCCchHHHHHHHHHhh
Q 021445          292 RDGDDNVKALFRQGQVSI  309 (312)
Q Consensus       292 ~l~p~~~Ka~~rrg~a~~  309 (312)
                      +++|.+..+++.+|.++.
T Consensus       153 ~~~~~~~~~~~~l~~~~~  170 (243)
T 2q7f_A          153 ELNENDTEARFQFGMCLA  170 (243)
T ss_dssp             HHCTTCHHHHHHHHHHHH
T ss_pred             HhCCccHHHHHHHHHHHH
Confidence            555555555555555544

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1

Probab=98.32  E-value=6.1e-07  Score=81.62  Aligned_cols=99  Identities=18%  Similarity=0.109  Sum_probs=65.7

Q ss_pred             hhhHhhhhhHHhhhcHHHHHHHHHHHHHHhhhccc---------cCCCCchhh-------hHHHHHHHHHHhHHHHHHHH
Q 021445          213 DSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWE---------KEGIDEGKS-------SSLRKTKSQIFTNSSACKLK  276 (312)
Q Consensus       213 ~~~k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~---------~~~~~~~~~-------~~~~~~~~~~~~N~a~~~~k  276 (312)
                      ..+...|..+.+.|++++|+..|+++++.......         ....+.++.       ..+.|....++.+++.++.+
T Consensus       272 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~  351 (388)
T 1w3b_A          272 DAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQ  351 (388)
T ss_dssp             HHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence            34566777777777777777777777764211000         000011110       01224456678889999999


Q ss_pred             cCCHHHHHHHHHHHHHcCCCchHHHHHHHHHhhhh
Q 021445          277 LGDLKGALLDTEFAMRDGDDNVKALFRQGQVSIIL  311 (312)
Q Consensus       277 l~~~~~Ai~~~~~al~l~p~~~Ka~~rrg~a~~~L  311 (312)
                      +|++++|+..++++++++|++..+|+.+|.++..+
T Consensus       352 ~g~~~~A~~~~~~a~~~~p~~~~a~~~lg~~~~~~  386 (388)
T 1w3b_A          352 QGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEM  386 (388)
T ss_dssp             TTCCHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHT
T ss_pred             cCCHHHHHHHHHHHHhhCCCCHHHHHhHHHHHHHc
Confidence            99999999999999999999999999998888765

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}

Probab=98.30  E-value=1.6e-06  Score=76.12  Aligned_cols=90  Identities=14%  Similarity=0.082  Sum_probs=70.2

Q ss_pred             hhhHhhhhhHHhhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHcCCHHHHHHHHHHHHH
Q 021445          213 DSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMR  292 (312)
Q Consensus       213 ~~~k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~  292 (312)
                      ..+...|..+++.|+|++|+..|+++++.........         ..+....++.++|.++.++|++++|+..++++++
T Consensus       194 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~---------~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~  264 (330)
T 3hym_B          194 FVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEV---------TVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALV  264 (330)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSC---------TTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccc---------cccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence            4456777888888888888888888887542211000         0022345899999999999999999999999999


Q ss_pred             cCCCchHHHHHHHHHhhhh
Q 021445          293 DGDDNVKALFRQGQVSIIL  311 (312)
Q Consensus       293 l~p~~~Ka~~rrg~a~~~L  311 (312)
                      ++|.+..+|+.+|.++..+
T Consensus       265 ~~~~~~~~~~~la~~~~~~  283 (330)
T 3hym_B          265 LIPQNASTYSAIGYIHSLM  283 (330)
T ss_dssp             HSTTCSHHHHHHHHHHHHH
T ss_pred             hCccchHHHHHHHHHHHHh
Confidence            9999999999999999764

>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}

Probab=98.29  E-value=1.2e-06  Score=75.31  Aligned_cols=95  Identities=14%  Similarity=-0.006  Sum_probs=72.9

Q ss_pred             hhhhHhhhhhHHh--------hhcHHHHHHHHHHHHHHhhhccccCCCCch----hhhHHHHHHHHHHhHHHHHHHHcCC
Q 021445          212 VDSIKVFGNEHYK--------KQDYKMALRKYRKALRYLDICWEKEGIDEG----KSSSLRKTKSQIFTNSSACKLKLGD  279 (312)
Q Consensus       212 ~~~~k~~Gn~~~~--------~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~----~~~~~~~~~~~~~~N~a~~~~kl~~  279 (312)
                      ...+...|..+++        .|++++|+..|+++++.....     ....    ....+.......+.++|.+|+++|+
T Consensus        89 ~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~-----~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~  163 (261)
T 3qky_A           89 PQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNH-----ELVDDATQKIRELRAKLARKQYEAARLYERREL  163 (261)
T ss_dssp             HHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTC-----TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCc-----hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccC
Confidence            3456788999999        999999999999999842111     0000    0112233444556999999999999


Q ss_pred             HHHHHHHHHHHHHcCCC---chHHHHHHHHHhhhh
Q 021445          280 LKGALLDTEFAMRDGDD---NVKALFRQGQVSIIL  311 (312)
Q Consensus       280 ~~~Ai~~~~~al~l~p~---~~Ka~~rrg~a~~~L  311 (312)
                      |++|+..++++++..|+   ...+++++|.+|..+
T Consensus       164 ~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~  198 (261)
T 3qky_A          164 YEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAY  198 (261)
T ss_dssp             HHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHh
Confidence            99999999999999998   568999999999754

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1

Probab=98.29  E-value=1.1e-06  Score=79.84  Aligned_cols=98  Identities=16%  Similarity=0.094  Sum_probs=54.3

Q ss_pred             hhhhHhhhhhHHhhhcHHHHHHHHHHHHHHhhhcc-----------ccCCCCch-----hhhHHHHHHHHHHhHHHHHHH
Q 021445          212 VDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICW-----------EKEGIDEG-----KSSSLRKTKSQIFTNSSACKL  275 (312)
Q Consensus       212 ~~~~k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~-----------~~~~~~~~-----~~~~~~~~~~~~~~N~a~~~~  275 (312)
                      +..+...|..+++.|+|++|+..|+++++.-....           ......+.     ......|....++.+++.++.
T Consensus        67 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~  146 (388)
T 1w3b_A           67 AEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLK  146 (388)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence            44577889999999999999999999987311100           00000000     001112233344555555555


Q ss_pred             HcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHhh
Q 021445          276 KLGDLKGALLDTEFAMRDGDDNVKALFRQGQVSI  309 (312)
Q Consensus       276 kl~~~~~Ai~~~~~al~l~p~~~Ka~~rrg~a~~  309 (312)
                      ++|++++|++.+.++++++|+++.+|+.+|.++.
T Consensus       147 ~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~  180 (388)
T 1w3b_A          147 ALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFN  180 (388)
T ss_dssp             TTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence            5555555555555555555555555555555554

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=98.28  E-value=2.1e-06  Score=75.66  Aligned_cols=88  Identities=8%  Similarity=-0.107  Sum_probs=69.0

Q ss_pred             hhhhHhhhhhHHhhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHc-CCHHHHHHHHHHH
Q 021445          212 VDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKL-GDLKGALLDTEFA  290 (312)
Q Consensus       212 ~~~~k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl-~~~~~Ai~~~~~a  290 (312)
                      +..+.+.|+.+.+.|+|++|+.+|++||++.....            -......++.|+|.+|.++ |++++|+.++++|
T Consensus        77 a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g------------~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~A  144 (292)
T 1qqe_A           77 GNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRG------------QFRRGANFKFELGEILENDLHDYAKAIDCYELA  144 (292)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT------------CHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcC------------CHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHH
Confidence            55677888888888899999999999888542210            0122356899999999995 9999999999999


Q ss_pred             HHcCCCc------hHHHHHHHHHhhhh
Q 021445          291 MRDGDDN------VKALFRQGQVSIIL  311 (312)
Q Consensus       291 l~l~p~~------~Ka~~rrg~a~~~L  311 (312)
                      |++.|..      ..+|...|.+|..+
T Consensus       145 l~~~~~~~~~~~~~~~~~~lg~~~~~~  171 (292)
T 1qqe_A          145 GEWYAQDQSVALSNKCFIKCADLKALD  171 (292)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHhCCChHHHHHHHHHHHHHHHHh
Confidence            9998754      56788889888764

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A

Probab=98.28  E-value=2.1e-06  Score=73.46  Aligned_cols=91  Identities=11%  Similarity=0.018  Sum_probs=76.4

Q ss_pred             hhhhhHhhhhhHHhhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHcCCHHHHHHHHHHH
Q 021445          211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA  290 (312)
Q Consensus       211 ~~~~~k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~a  290 (312)
                      .+..+...|..++..|+|++|+..|.+++........          .-.+....++.|+|.++..+|++++|+..+.++
T Consensus        84 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~----------~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a  153 (283)
T 3edt_B           84 VAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLG----------KFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRA  153 (283)
T ss_dssp             HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHC----------TTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcC----------CCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            4556788999999999999999999999996433100          013567889999999999999999999999999


Q ss_pred             HHc--------CCCchHHHHHHHHHhhhh
Q 021445          291 MRD--------GDDNVKALFRQGQVSIIL  311 (312)
Q Consensus       291 l~l--------~p~~~Ka~~rrg~a~~~L  311 (312)
                      +++        +|....+++..|.+|..+
T Consensus       154 l~~~~~~~~~~~~~~~~~~~~la~~~~~~  182 (283)
T 3edt_B          154 LEIYATRLGPDDPNVAKTKNNLASCYLKQ  182 (283)
T ss_dssp             HHHHHHHSCTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhcCCCCHHHHHHHHHHHHHHHHc
Confidence            999        888889999999998764

>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1

Probab=98.27  E-value=5.8e-06  Score=65.69  Aligned_cols=78  Identities=10%  Similarity=0.022  Sum_probs=64.1

Q ss_pred             hhhhHhhhhhHHhhh---cHHHHHHHHHHHHHHhhhccccCCCCchhhhHHH-H-HHHHHHhHHHHHHHHcCCHHHHHHH
Q 021445          212 VDSIKVFGNEHYKKQ---DYKMALRKYRKALRYLDICWEKEGIDEGKSSSLR-K-TKSQIFTNSSACKLKLGDLKGALLD  286 (312)
Q Consensus       212 ~~~~k~~Gn~~~~~~---~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~-~-~~~~~~~N~a~~~~kl~~~~~Ai~~  286 (312)
                      .+...+.|-.+.+.+   ++++|+..+++.++                  .. | ....+++|+|..|+++++|++|+++
T Consensus        32 ~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~------------------~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y   93 (152)
T 1pc2_A           32 KSTQFEYAWCLVRSKYNDDIRKGIVLLEELLP------------------KGSKEEQRDYVFYLAVGNYRLKEYEKALKY   93 (152)
T ss_dssp             HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHH------------------HSCHHHHHHHHHHHHHHHHHTSCHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHh------------------cCCccchHHHHHHHHHHHHHccCHHHHHHH
Confidence            455667777888766   77788888888887                  22 3 4577999999999999999999999


Q ss_pred             HHHHHHcCCCchHHHHHHHHH
Q 021445          287 TEFAMRDGDDNVKALFRQGQV  307 (312)
Q Consensus       287 ~~~al~l~p~~~Ka~~rrg~a  307 (312)
                      |+++|+++|+|..|..-+-.+
T Consensus        94 ~~~lL~ieP~n~QA~~Lk~~i  114 (152)
T 1pc2_A           94 VRGLLQTEPQNNQAKELERLI  114 (152)
T ss_dssp             HHHHHHHCTTCHHHHHHHHHH
T ss_pred             HHHHHhcCCCCHHHHHHHHHH
Confidence            999999999999888766544

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=98.27  E-value=3.7e-06  Score=77.61  Aligned_cols=82  Identities=17%  Similarity=0.105  Sum_probs=63.9

Q ss_pred             HhhhhhHHhhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHcCCHHHHHHHHHHHHHcCC
Q 021445          216 KVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGD  295 (312)
Q Consensus       216 k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~l~p  295 (312)
                      ...|..+++.|+|++|+..|+++++....              .......++.++|.++.++|++++|+..++++++++|
T Consensus       261 ~~~~~~~~~~g~~~~A~~~~~~~l~~~p~--------------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p  326 (450)
T 2y4t_A          261 IESAEELIRDGRYTDATSKYESVMKTEPS--------------IAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEP  326 (450)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHHHCCS--------------SHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCT
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhcCCc--------------chHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCc
Confidence            45599999999999999999999984211              1122345778888888888888888888888888888


Q ss_pred             CchHHHHHHHHHhhhh
Q 021445          296 DNVKALFRQGQVSIIL  311 (312)
Q Consensus       296 ~~~Ka~~rrg~a~~~L  311 (312)
                      +++.+|+.+|.++..+
T Consensus       327 ~~~~~~~~l~~~~~~~  342 (450)
T 2y4t_A          327 DNVNALKDRAEAYLIE  342 (450)
T ss_dssp             TCHHHHHHHHHHHHHT
T ss_pred             ccHHHHHHHHHHHHHh
Confidence            8888888888887654

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}

Probab=98.27  E-value=1.9e-06  Score=73.93  Aligned_cols=83  Identities=14%  Similarity=0.029  Sum_probs=67.8

Q ss_pred             hhHhhhhhHHhhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHcCCHHHHHHHHHHHHHc
Q 021445          214 SIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRD  293 (312)
Q Consensus       214 ~~k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~l  293 (312)
                      .+...|..++..|+|++|+..|.++++. ..              -......+|.++|.++.++|++++|+..+.+++++
T Consensus        39 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~-~~--------------~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~  103 (272)
T 3u4t_A           39 IYNRRAVCYYELAKYDLAQKDIETYFSK-VN--------------ATKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDR  103 (272)
T ss_dssp             THHHHHHHHHHTTCHHHHHHHHHHHHTT-SC--------------TTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHhc-cC--------------chhHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhc
Confidence            4667777888888888888888888872 10              01113557899999999999999999999999999


Q ss_pred             CCCchHHHHHHHHHhhhh
Q 021445          294 GDDNVKALFRQGQVSIIL  311 (312)
Q Consensus       294 ~p~~~Ka~~rrg~a~~~L  311 (312)
                      +|.++.+|+.+|.+|..+
T Consensus       104 ~~~~~~~~~~l~~~~~~~  121 (272)
T 3u4t_A          104 DTTRLDMYGQIGSYFYNK  121 (272)
T ss_dssp             STTCTHHHHHHHHHHHHT
T ss_pred             CcccHHHHHHHHHHHHHc
Confidence            999999999999998764

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A

Probab=98.26  E-value=3.3e-06  Score=72.17  Aligned_cols=91  Identities=15%  Similarity=0.027  Sum_probs=75.7

Q ss_pred             hhhhhHhhhhhHHhhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHcCCHHHHHHHHHHH
Q 021445          211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA  290 (312)
Q Consensus       211 ~~~~~k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~a  290 (312)
                      .+..+...|..++..|+|++|+..|.++++.......          ...+....++.++|.++..+|++++|+..+.++
T Consensus        42 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~----------~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a  111 (283)
T 3edt_B           42 VATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLG----------KDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRA  111 (283)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC----------TTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcC----------CcchHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence            3555778999999999999999999999996432100          013567889999999999999999999999999


Q ss_pred             HHc--------CCCchHHHHHHHHHhhhh
Q 021445          291 MRD--------GDDNVKALFRQGQVSIIL  311 (312)
Q Consensus       291 l~l--------~p~~~Ka~~rrg~a~~~L  311 (312)
                      +.+        +|....+++..|.+|..+
T Consensus       112 l~~~~~~~~~~~~~~~~~~~~la~~~~~~  140 (283)
T 3edt_B          112 LEIREKVLGKFHPDVAKQLNNLALLCQNQ  140 (283)
T ss_dssp             HHHHHHHHCTTCHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHcCCCChHHHHHHHHHHHHHHHc
Confidence            988        678899999999998764

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A

Probab=98.26  E-value=2.8e-06  Score=74.48  Aligned_cols=82  Identities=16%  Similarity=0.138  Sum_probs=72.9

Q ss_pred             hhhhHhhhhhHHhhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHcCCHHHHHHHHHHHH
Q 021445          212 VDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAM  291 (312)
Q Consensus       212 ~~~~k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al  291 (312)
                      ...+...|..+++.|++++|+..|.++++                  ..|....++.++|.++.++|++++|+..+.+++
T Consensus       172 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~------------------~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~  233 (327)
T 3cv0_A          172 AQLHASLGVLYNLSNNYDSAAANLRRAVE------------------LRPDDAQLWNKLGATLANGNRPQEALDAYNRAL  233 (327)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHH------------------HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHH------------------hCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            44567789999999999999999999998                  334456689999999999999999999999999


Q ss_pred             HcCCCchHHHHHHHHHhhhh
Q 021445          292 RDGDDNVKALFRQGQVSIIL  311 (312)
Q Consensus       292 ~l~p~~~Ka~~rrg~a~~~L  311 (312)
                      +++|.+..+++.+|.++..+
T Consensus       234 ~~~~~~~~~~~~l~~~~~~~  253 (327)
T 3cv0_A          234 DINPGYVRVMYNMAVSYSNM  253 (327)
T ss_dssp             HHCTTCHHHHHHHHHHHHHT
T ss_pred             HcCCCCHHHHHHHHHHHHHh
Confidence            99999999999999998764

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}

Probab=98.25  E-value=4e-06  Score=76.34  Aligned_cols=89  Identities=16%  Similarity=0.186  Sum_probs=75.6

Q ss_pred             hhhhhHhhhhhHHhhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHcCCHHHHHHHHHHH
Q 021445          211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA  290 (312)
Q Consensus       211 ~~~~~k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~a  290 (312)
                      .+..+...|..+...|+|++|+..|.+|+++....            ...+....++.|+|.||.++|+|++|+..+.+|
T Consensus       183 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~------------~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~a  250 (383)
T 3ulq_A          183 LLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAE------------KQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRA  250 (383)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT------------TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHc------------CChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence            35567788999999999999999999999975431            023456779999999999999999999999999


Q ss_pred             HH-----cC-CCchHHHHHHHHHhhhh
Q 021445          291 MR-----DG-DDNVKALFRQGQVSIIL  311 (312)
Q Consensus       291 l~-----l~-p~~~Ka~~rrg~a~~~L  311 (312)
                      ++     .+ |..+.+++..|.+|..+
T Consensus       251 l~~~~~~~~~~~~~~~~~~l~~~~~~~  277 (383)
T 3ulq_A          251 IAVFEESNILPSLPQAYFLITQIHYKL  277 (383)
T ss_dssp             HHHHHHTTCGGGHHHHHHHHHHHHHHT
T ss_pred             HHHHHhhccchhHHHHHHHHHHHHHHC
Confidence            98     56 88899999999998765

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}

Probab=98.25  E-value=3.5e-06  Score=76.70  Aligned_cols=89  Identities=18%  Similarity=0.029  Sum_probs=76.3

Q ss_pred             hhhhhHhhhhhHHhhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHcCCHHHHHHHHHHH
Q 021445          211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA  290 (312)
Q Consensus       211 ~~~~~k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~a  290 (312)
                      .+..+...|..++..|+|++|+..|.+|+++.....            .......++.|+|.||..+|++++|+..+.+|
T Consensus       181 ~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~------------~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~a  248 (378)
T 3q15_A          181 TIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQ------------NDRFIAISLLNIANSYDRSGDDQMAVEHFQKA  248 (378)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT------------CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcC------------CHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence            455677899999999999999999999999754310            12356778999999999999999999999999


Q ss_pred             HH-----cCCCchHHHHHHHHHhhhh
Q 021445          291 MR-----DGDDNVKALFRQGQVSIIL  311 (312)
Q Consensus       291 l~-----l~p~~~Ka~~rrg~a~~~L  311 (312)
                      +.     .+|..+.+++..|.++..+
T Consensus       249 l~~~~~~~~~~~~~~~~~la~~~~~~  274 (378)
T 3q15_A          249 AKVSREKVPDLLPKVLFGLSWTLCKA  274 (378)
T ss_dssp             HHHHHHHCGGGHHHHHHHHHHHHHHT
T ss_pred             HHHHHhhCChhHHHHHHHHHHHHHHC
Confidence            99     8888899999999998764

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}

Probab=98.24  E-value=1.1e-06  Score=71.26  Aligned_cols=72  Identities=8%  Similarity=-0.041  Sum_probs=60.3

Q ss_pred             hhhHhhhhhHHhhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHcCCHHHHHHHHHHHHH
Q 021445          213 DSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMR  292 (312)
Q Consensus       213 ~~~k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~  292 (312)
                      +.+.+.|..+++.|+|++|+..|+++++                  ..|....++.++|.+++++|++++|+..+++++.
T Consensus         7 ~~~~~~a~~~~~~g~~~~A~~~~~~al~------------------~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~   68 (176)
T 2r5s_A            7 EQLLKQVSELLQQGEHAQALNVIQTLSD------------------ELQSRGDVKLAKADCLLETKQFELAQELLATIPL   68 (176)
T ss_dssp             TTHHHHHHHHHHTTCHHHHHHHHHTSCH------------------HHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCG
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHH------------------HCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhh
Confidence            4577889999999999999999999998                  7788888999999999999999998888877777


Q ss_pred             cCCCchHHHHH
Q 021445          293 DGDDNVKALFR  303 (312)
Q Consensus       293 l~p~~~Ka~~r  303 (312)
                      ++| ++..+..
T Consensus        69 ~~p-~~~~~~~   78 (176)
T 2r5s_A           69 EYQ-DNSYKSL   78 (176)
T ss_dssp             GGC-CHHHHHH
T ss_pred             ccC-ChHHHHH
Confidence            766 5544433

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}

Probab=98.24  E-value=4.2e-06  Score=64.99  Aligned_cols=89  Identities=13%  Similarity=0.142  Sum_probs=63.9

Q ss_pred             hhhhhHhhhhhHHhhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHcCCHHHHHHHHHHH
Q 021445          211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA  290 (312)
Q Consensus       211 ~~~~~k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~a  290 (312)
                      .+..+...|..++..|+|++|+..|.+++++.....            .......++.++|.++..+|++++|+..+.++
T Consensus         8 ~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~------------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a   75 (164)
T 3ro3_A            8 QGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFG------------DKAAERIAYSNLGNAYIFLGEFETASEYYKKT   75 (164)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT------------CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhC------------CchHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            466677888888888899999999998888654310            12334567888888888888888888888888


Q ss_pred             HHcCCCc------hHHHHHHHHHhhhh
Q 021445          291 MRDGDDN------VKALFRQGQVSIIL  311 (312)
Q Consensus       291 l~l~p~~------~Ka~~rrg~a~~~L  311 (312)
                      +.+.+..      ..+++..|.++..+
T Consensus        76 ~~~~~~~~~~~~~~~~~~~l~~~~~~~  102 (164)
T 3ro3_A           76 LLLARQLKDRAVEAQSCYSLGNTYTLL  102 (164)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHhCCcHHHHHHHHHHHHHHHHH
Confidence            8765432      56777777776543

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A

Probab=98.23  E-value=3e-06  Score=71.84  Aligned_cols=99  Identities=18%  Similarity=0.107  Sum_probs=59.7

Q ss_pred             hhhHhhhhhHHhhhcHHHHHHHHHHHHHHhhhccc---------cCCCCchhh-------hH--HHHHHHHHHhHHHHHH
Q 021445          213 DSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWE---------KEGIDEGKS-------SS--LRKTKSQIFTNSSACK  274 (312)
Q Consensus       213 ~~~k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~---------~~~~~~~~~-------~~--~~~~~~~~~~N~a~~~  274 (312)
                      ..+...|..++..|++++|+..|.++++.......         ....+.++.       ..  ..+....++.++|.++
T Consensus        72 ~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~  151 (252)
T 2ho1_A           72 DAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVS  151 (252)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHH
Confidence            34566788888888888888888888874211000         000000000       00  1233455667777777


Q ss_pred             HHcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHhhhh
Q 021445          275 LKLGDLKGALLDTEFAMRDGDDNVKALFRQGQVSIIL  311 (312)
Q Consensus       275 ~kl~~~~~Ai~~~~~al~l~p~~~Ka~~rrg~a~~~L  311 (312)
                      +++|++++|+..+.++++++|.+..+++.+|.++..+
T Consensus       152 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~  188 (252)
T 2ho1_A          152 LQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKE  188 (252)
T ss_dssp             HHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHT
T ss_pred             HHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHc
Confidence            7777777777777777777777777777777766543

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}

Probab=98.19  E-value=1.3e-06  Score=63.93  Aligned_cols=69  Identities=12%  Similarity=0.136  Sum_probs=59.9

Q ss_pred             hhhhHhhhhhHHhhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHH--HHHHHhHHHHHHHHc-CCHHHHHHHHH
Q 021445          212 VDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKT--KSQIFTNSSACKLKL-GDLKGALLDTE  288 (312)
Q Consensus       212 ~~~~k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~--~~~~~~N~a~~~~kl-~~~~~Ai~~~~  288 (312)
                      ...+...|..++..|+|++|+..|+++++.                  .+.  ...++.++|.++.++ +++++|++.+.
T Consensus        40 ~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~------------------~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~  101 (112)
T 2kck_A           40 SKYWLMKGKALYNLERYEEAVDCYNYVINV------------------IEDEYNKDVWAAKADALRYIEGKEVEAEIAEA  101 (112)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHT------------------SCCTTCHHHHHHHHHHHTTCSSCSHHHHHHHH
T ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHHh------------------CcccchHHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence            345678899999999999999999999983                  233  456899999999999 99999999999


Q ss_pred             HHHHcCCCch
Q 021445          289 FAMRDGDDNV  298 (312)
Q Consensus       289 ~al~l~p~~~  298 (312)
                      +++..+|...
T Consensus       102 ~~~~~~p~~~  111 (112)
T 2kck_A          102 RAKLEHHHHH  111 (112)
T ss_dssp             HHGGGCCCCC
T ss_pred             HHhhcccCCC
Confidence            9999998764

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1

Probab=98.18  E-value=4e-06  Score=71.73  Aligned_cols=80  Identities=13%  Similarity=-0.009  Sum_probs=68.2

Q ss_pred             hhhhHHhhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHcCCHHHHHHHHHHHHHcCCCc
Q 021445          218 FGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDN  297 (312)
Q Consensus       218 ~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~l~p~~  297 (312)
                      .+..+...++|++|+..|.++++....              ..+....++.++|.++..+|++++|+..+.++++++|.+
T Consensus        11 ~~~~~~~~~~~~~A~~~~~~~~~~~~~--------------~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~   76 (275)
T 1xnf_A           11 LAVPLQPTLQQEVILARMEQILASRAL--------------TDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDM   76 (275)
T ss_dssp             SCCCCCCCHHHHHHHHHHHHHHTSSCC--------------CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCC
T ss_pred             eeeccCccchHHHHHHHHHHHHhcccc--------------cCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCc
Confidence            344556679999999999999983110              245678899999999999999999999999999999999


Q ss_pred             hHHHHHHHHHhhhh
Q 021445          298 VKALFRQGQVSIIL  311 (312)
Q Consensus       298 ~Ka~~rrg~a~~~L  311 (312)
                      +.+|+.+|.++..+
T Consensus        77 ~~~~~~la~~~~~~   90 (275)
T 1xnf_A           77 PEVFNYLGIYLTQA   90 (275)
T ss_dssp             HHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHc
Confidence            99999999998764

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}

Probab=98.17  E-value=4.9e-06  Score=68.69  Aligned_cols=76  Identities=13%  Similarity=0.044  Sum_probs=41.1

Q ss_pred             hHhhhhhHHhhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 021445          215 IKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDG  294 (312)
Q Consensus       215 ~k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~l~  294 (312)
                      +...|..+++.|++++|+..|.++++                  ..|....++.++|.++.++|++++|+..++++++++
T Consensus       116 ~~~l~~~~~~~~~~~~A~~~~~~~~~------------------~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~  177 (225)
T 2vq2_A          116 NLNKGICSAKQGQFGLAEAYLKRSLA------------------AQPQFPPAFKELARTKMLAGQLGDADYYFKKYQSRV  177 (225)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHH------------------HSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHH------------------hCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence            44455555555555555555555555                  222233455556666666666666666666666666


Q ss_pred             C-CchHHHHHHHHHh
Q 021445          295 D-DNVKALFRQGQVS  308 (312)
Q Consensus       295 p-~~~Ka~~rrg~a~  308 (312)
                      | .+..++...+.++
T Consensus       178 ~~~~~~~~~~~~~~~  192 (225)
T 2vq2_A          178 EVLQADDLLLGWKIA  192 (225)
T ss_dssp             CSCCHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHH
Confidence            5 5555555544443

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A

Probab=98.17  E-value=2.4e-06  Score=62.66  Aligned_cols=51  Identities=18%  Similarity=0.065  Sum_probs=46.9

Q ss_pred             HHHHHHHhHHHHHHHHcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHhhhh
Q 021445          261 KTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQVSIIL  311 (312)
Q Consensus       261 ~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~l~p~~~Ka~~rrg~a~~~L  311 (312)
                      |....++.++|.+++++|+|++|+..++++++++|+++.+|+.+|.+|..+
T Consensus         4 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~   54 (100)
T 3ma5_A            4 PEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERL   54 (100)
T ss_dssp             -CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHT
T ss_pred             ccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHc
Confidence            445678999999999999999999999999999999999999999999765

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=98.16  E-value=3.2e-06  Score=74.38  Aligned_cols=81  Identities=10%  Similarity=-0.003  Sum_probs=64.9

Q ss_pred             hhhhHhhhhhHHhhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHcCCHHHHHHHHHH--
Q 021445          212 VDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEF--  289 (312)
Q Consensus       212 ~~~~k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~--  289 (312)
                      ...+...|..+...|++++|+..|++++.                  .+|....++.++|.+++++|++++|+..+.+  
T Consensus       117 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~------------------~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~  178 (287)
T 3qou_A          117 EELXAQQAMQLMQESNYTDALPLLXDAWQ------------------LSNQNGEIGLLLAETLIALNRSEDAEAVLXTIP  178 (287)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHH------------------HTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSC
T ss_pred             hhhHHHHHHHHHhCCCHHHHHHHHHHHHH------------------hCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence            45678999999999999999999999999                  5666677888888888888888877655554  


Q ss_pred             --------------------------------HHHcCCCchHHHHHHHHHhhh
Q 021445          290 --------------------------------AMRDGDDNVKALFRQGQVSII  310 (312)
Q Consensus       290 --------------------------------al~l~p~~~Ka~~rrg~a~~~  310 (312)
                                                      ++.++|+++.+++.+|.+|..
T Consensus       179 ~~~p~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~  231 (287)
T 3qou_A          179 LQDQDTRYQGLVAQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQ  231 (287)
T ss_dssp             GGGCSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             hhhcchHHHHHHHHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHH
Confidence                                            456677777777777777754

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}

Probab=98.16  E-value=4.9e-06  Score=73.82  Aligned_cols=87  Identities=13%  Similarity=0.037  Sum_probs=64.5

Q ss_pred             hhhhhHhhhhhHHhhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHcCCHHHHHHHHHHH
Q 021445          211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA  290 (312)
Q Consensus       211 ~~~~~k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~a  290 (312)
                      .+..+.+.|..+.. |+|++|+..|++|+++.....            .......++.|+|.+|.++|+|++|+..++++
T Consensus       115 ~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~------------~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a  181 (307)
T 2ifu_A          115 AAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEE------------RLRQAAELIGKASRLLVRQQKFDEAAASLQKE  181 (307)
T ss_dssp             HHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTT------------CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCC------------ChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            34556677777777 889999999999988643210            11234678999999999999999999999999


Q ss_pred             HHcCCCc------hHHHHHHHHHhhh
Q 021445          291 MRDGDDN------VKALFRQGQVSII  310 (312)
Q Consensus       291 l~l~p~~------~Ka~~rrg~a~~~  310 (312)
                      +++.|.+      ..+++.+|.+++.
T Consensus       182 l~~~~~~~~~~~~~~~~~~~g~~~~~  207 (307)
T 2ifu_A          182 KSMYKEMENYPTCYKKCIAQVLVQLH  207 (307)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHcCChhHHHHHHHHHHHHHHH
Confidence            9876543      3477777777764

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}

Probab=98.12  E-value=1.1e-05  Score=65.87  Aligned_cols=89  Identities=7%  Similarity=-0.038  Sum_probs=73.6

Q ss_pred             hhhhhHhhhhhHHhhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHcCCHHHHHHHHHHH
Q 021445          211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA  290 (312)
Q Consensus       211 ~~~~~k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~a  290 (312)
                      .+..+...|..++..|+|++|+..|.+++.+.....            ..+....++.|+|.++..+|++++|+..+.++
T Consensus        25 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~------------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a   92 (203)
T 3gw4_A           25 ASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSG------------DHTAEHRALHQVGMVERMAGNWDAARRCFLEE   92 (203)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTC------------CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcC------------CcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            466778899999999999999999999999765421            24566789999999999999999999999999


Q ss_pred             HHc------CC-CchHHHHHHHHHhhhh
Q 021445          291 MRD------GD-DNVKALFRQGQVSIIL  311 (312)
Q Consensus       291 l~l------~p-~~~Ka~~rrg~a~~~L  311 (312)
                      +.+      ++ ....+++..|.++..+
T Consensus        93 l~~~~~~~~~~~~~~~~~~~lg~~~~~~  120 (203)
T 3gw4_A           93 RELLASLPEDPLAASANAYEVATVALHF  120 (203)
T ss_dssp             HHHHHHSCCCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHcCccHHHHHHHHHHHHHHHHHh
Confidence            988      33 3456788888887654

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}

Probab=98.11  E-value=1.2e-05  Score=62.43  Aligned_cols=88  Identities=16%  Similarity=0.055  Sum_probs=70.1

Q ss_pred             hhhhHhhhhhHHhhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHcCCHHHHHHHHHHHH
Q 021445          212 VDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAM  291 (312)
Q Consensus       212 ~~~~k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al  291 (312)
                      +..+...|..++..|+|++|+..|.+++.+.....            ..+....++.|+|.++..++++++|+..+.+++
T Consensus        49 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~------------~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~  116 (164)
T 3ro3_A           49 RIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLK------------DRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHL  116 (164)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT------------CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhC------------CcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence            34567889999999999999999999999754321            123457789999999999999999999999999


Q ss_pred             HcCC------CchHHHHHHHHHhhhh
Q 021445          292 RDGD------DNVKALFRQGQVSIIL  311 (312)
Q Consensus       292 ~l~p------~~~Ka~~rrg~a~~~L  311 (312)
                      ++.+      ....+++..|.++..+
T Consensus       117 ~~~~~~~~~~~~~~~~~~la~~~~~~  142 (164)
T 3ro3_A          117 AIAQELKDRIGEGRACWSLGNAYTAL  142 (164)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHccchHhHHHHHHHHHHHHHHc
Confidence            7732      2356788888877653

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}

Probab=98.10  E-value=9.3e-06  Score=75.55  Aligned_cols=90  Identities=11%  Similarity=0.025  Sum_probs=70.0

Q ss_pred             hhhhHhhhhhHHhhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHcCCHHHHHHHHHHHH
Q 021445          212 VDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAM  291 (312)
Q Consensus       212 ~~~~k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al  291 (312)
                      +..+...|..++..|+|++|++.|++|++++......         ...+.....|.|+|.+|..+|+|++|+.++++++
T Consensus        51 a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~---------~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~  121 (472)
T 4g1t_A           51 ATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHAD---------QAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVK  121 (472)
T ss_dssp             CHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGG---------GCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCcc---------ccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHH
Confidence            4456678999999999999999999999975432110         0123456789999999999999999999999999


Q ss_pred             HcC--------CCchHHHHHHHHHhhh
Q 021445          292 RDG--------DDNVKALFRQGQVSII  310 (312)
Q Consensus       292 ~l~--------p~~~Ka~~rrg~a~~~  310 (312)
                      ++.        +..+.++..+|.++..
T Consensus       122 ~i~~~~~~~~~~~~~~~~~~~g~~~~~  148 (472)
T 4g1t_A          122 HVCEKFSSPYRIESPELDCEEGWTRLK  148 (472)
T ss_dssp             HHHHHSCCSSCCCCHHHHHHHHHHHHH
T ss_pred             HHhHhcccccchhhHHHHHHHHHHHHH
Confidence            763        3566777777777654

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}

Probab=98.07  E-value=5.9e-06  Score=79.23  Aligned_cols=81  Identities=12%  Similarity=0.022  Sum_probs=72.7

Q ss_pred             hhhhHhhhhhHHhhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHcCCHHHHHHHHHHHH
Q 021445          212 VDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAM  291 (312)
Q Consensus       212 ~~~~k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al  291 (312)
                      +..+...|..+++.|++++|+..|+++++                  +.|....+|.+++.+|.++|++++|++.+++++
T Consensus       516 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~------------------~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l  577 (597)
T 2xpi_A          516 AATWANLGHAYRKLKMYDAAIDALNQGLL------------------LSTNDANVHTAIALVYLHKKIPGLAITHLHESL  577 (597)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHH------------------HSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHH------------------hCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence            45677889999999999999999999998                  344456799999999999999999999999999


Q ss_pred             HcCCCchHHHHHHHHHhhh
Q 021445          292 RDGDDNVKALFRQGQVSII  310 (312)
Q Consensus       292 ~l~p~~~Ka~~rrg~a~~~  310 (312)
                      +++|++..++..++.+|..
T Consensus       578 ~~~p~~~~~~~~l~~~~~~  596 (597)
T 2xpi_A          578 AISPNEIMASDLLKRALEE  596 (597)
T ss_dssp             HHCTTCHHHHHHHHHTTC-
T ss_pred             hcCCCChHHHHHHHHHHhc
Confidence            9999999999999998853

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}

Probab=98.07  E-value=1.7e-05  Score=73.83  Aligned_cols=90  Identities=12%  Similarity=-0.048  Sum_probs=70.8

Q ss_pred             hhhhHhhhhhHHhhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHcC--CHHHHHHHHHH
Q 021445          212 VDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLG--DLKGALLDTEF  289 (312)
Q Consensus       212 ~~~~k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~--~~~~Ai~~~~~  289 (312)
                      +..+.+.|..++..|+|++|+..|.+++++.........          +....++.|++.++++++  +|++|++++.+
T Consensus        94 ~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~~----------~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~k  163 (472)
T 4g1t_A           94 LVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYR----------IESPELDCEEGWTRLKCGGNQNERAKVCFEK  163 (472)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSSC----------CCCHHHHHHHHHHHHHHCTTHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccccc----------hhhHHHHHHHHHHHHHHccccHHHHHHHHHH
Confidence            334567888999999999999999999997544321111          112457888998888865  69999999999


Q ss_pred             HHHcCCCchHHHHHHHHHhhhh
Q 021445          290 AMRDGDDNVKALFRQGQVSIIL  311 (312)
Q Consensus       290 al~l~p~~~Ka~~rrg~a~~~L  311 (312)
                      ||+++|+++.+++..|.++..+
T Consensus       164 al~~~p~~~~~~~~~~~~~~~l  185 (472)
T 4g1t_A          164 ALEKKPKNPEFTSGLAIASYRL  185 (472)
T ss_dssp             HHHHSTTCHHHHHHHHHHHHHH
T ss_pred             HHHhCCCCHHHHHHHHHHHHHh
Confidence            9999999999999999887543

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}

Probab=98.04  E-value=1.6e-05  Score=69.08  Aligned_cols=91  Identities=11%  Similarity=0.005  Sum_probs=75.3

Q ss_pred             hhhhhHhhhhhHHhhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHcCCHHHHHHHHHHH
Q 021445          211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA  290 (312)
Q Consensus       211 ~~~~~k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~a  290 (312)
                      .+..+...|..++..|+|++|+..|.++++.......          ...+....++.++|.++.++|++++|++.+.++
T Consensus       110 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~----------~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a  179 (311)
T 3nf1_A          110 VAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLG----------KDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRA  179 (311)
T ss_dssp             HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHC----------TTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcC----------CCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            3455778899999999999999999999996432100          012566789999999999999999999999999


Q ss_pred             HHc--------CCCchHHHHHHHHHhhhh
Q 021445          291 MRD--------GDDNVKALFRQGQVSIIL  311 (312)
Q Consensus       291 l~l--------~p~~~Ka~~rrg~a~~~L  311 (312)
                      +++        +|....+++..|.+|..+
T Consensus       180 ~~~~~~~~~~~~~~~~~~~~~la~~~~~~  208 (311)
T 3nf1_A          180 LEIYQTKLGPDDPNVAKTKNNLASCYLKQ  208 (311)
T ss_dssp             HHHHHHTSCTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHHHHHc
Confidence            998        788889999999998764

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A

Probab=98.03  E-value=9.3e-06  Score=76.56  Aligned_cols=82  Identities=13%  Similarity=-0.019  Sum_probs=64.5

Q ss_pred             hhhhHhhhhhHHhhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHcCCHHHHHHHHHHHH
Q 021445          212 VDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAM  291 (312)
Q Consensus       212 ~~~~k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al  291 (312)
                      ...+...|..++..|+|++|+..|+++++                  +.|....++.++|.++.++|++++|+..+++++
T Consensus       310 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~------------------~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~  371 (537)
T 3fp2_A          310 PPTYYHRGQMYFILQDYKNAKEDFQKAQS------------------LNPENVYPYIQLACLLYKQGKFTESEAFFNETK  371 (537)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHH------------------HCTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHH------------------hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            34466778888888888888888888887                  333344678888888888888888888888888


Q ss_pred             HcCCCchHHHHHHHHHhhhh
Q 021445          292 RDGDDNVKALFRQGQVSIIL  311 (312)
Q Consensus       292 ~l~p~~~Ka~~rrg~a~~~L  311 (312)
                      +++|.+..+++.+|.++..+
T Consensus       372 ~~~~~~~~~~~~l~~~~~~~  391 (537)
T 3fp2_A          372 LKFPTLPEVPTFFAEILTDR  391 (537)
T ss_dssp             HHCTTCTHHHHHHHHHHHHT
T ss_pred             HhCCCChHHHHHHHHHHHHh
Confidence            88888888888888887654

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}

Probab=98.03  E-value=1.6e-05  Score=69.07  Aligned_cols=91  Identities=10%  Similarity=-0.048  Sum_probs=76.4

Q ss_pred             hhhhhHhhhhhHHhhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHcCCHHHHHHHHHHH
Q 021445          211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA  290 (312)
Q Consensus       211 ~~~~~k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~a  290 (312)
                      .+..+...|..++..|+|++|+..|++++++......          ...+....++.++|.++..+|++++|+..+.++
T Consensus        26 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~----------~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a   95 (311)
T 3nf1_A           26 RLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSG----------HDHPDVATMLNILALVYRDQNKYKDAANLLNDA   95 (311)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHC----------SSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcC----------CCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence            5777899999999999999999999999996543100          013566789999999999999999999999999


Q ss_pred             HHc--------CCCchHHHHHHHHHhhhh
Q 021445          291 MRD--------GDDNVKALFRQGQVSIIL  311 (312)
Q Consensus       291 l~l--------~p~~~Ka~~rrg~a~~~L  311 (312)
                      +.+        +|....+++..|.+|..+
T Consensus        96 l~~~~~~~~~~~~~~~~~~~~l~~~~~~~  124 (311)
T 3nf1_A           96 LAIREKTLGKDHPAVAATLNNLAVLYGKR  124 (311)
T ss_dssp             HHHHHHHHCTTCHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHhCCCChHHHHHHHHHHHHHHHc
Confidence            987        467788999999988754

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}

Probab=98.03  E-value=1e-05  Score=73.73  Aligned_cols=87  Identities=14%  Similarity=0.114  Sum_probs=58.6

Q ss_pred             hhhhhhHhhhhhHHhhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHcCCHHHHHHHHHH
Q 021445          210 NAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEF  289 (312)
Q Consensus       210 ~~~~~~k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~  289 (312)
                      ..+..+...|..++..|+|++|+..|+++++.-..              -......++.++|.+|..+|+|++|+..+.+
T Consensus        46 ~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~--------------~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~  111 (411)
T 4a1s_A           46 SMCLELALEGERLCNAGDCRAGVAFFQAAIQAGTE--------------DLRTLSAIYSQLGNAYFYLGDYNKAMQYHKH  111 (411)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS--------------CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhccc--------------ChhHHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence            45677888999999999999999999999984111              1122334566666666666666666666666


Q ss_pred             HHHc------CCCchHHHHHHHHHhhh
Q 021445          290 AMRD------GDDNVKALFRQGQVSII  310 (312)
Q Consensus       290 al~l------~p~~~Ka~~rrg~a~~~  310 (312)
                      ++++      +|....+++.+|.+|..
T Consensus       112 al~~~~~~~~~~~~~~~~~~l~~~~~~  138 (411)
T 4a1s_A          112 DLTLAKSMNDRLGEAKSSGNLGNTLKV  138 (411)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHccCchHHHHHHHHHHHHHHH
Confidence            6655      45555666666666544

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}

Probab=98.01  E-value=1.6e-05  Score=72.19  Aligned_cols=90  Identities=11%  Similarity=0.031  Sum_probs=71.8

Q ss_pred             hhhhhHhhhhhHHhhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHcCCHHHHHHHHHHH
Q 021445          211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA  290 (312)
Q Consensus       211 ~~~~~k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~a  290 (312)
                      .+..+...|..++..|+|.+|+..|.+|+++.....           ...+....++.|+|.+|..+|+|++|+..+.+|
T Consensus       142 ~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~-----------~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a  210 (383)
T 3ulq_A          142 KAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHE-----------AYNIRLLQCHSLFATNFLDLKQYEDAISHFQKA  210 (383)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCS-----------TTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCc-----------cchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence            456677888888888899999999999988654320           014556789999999999999999999999999


Q ss_pred             HHcCCCc------hHHHHHHHHHhhhh
Q 021445          291 MRDGDDN------VKALFRQGQVSIIL  311 (312)
Q Consensus       291 l~l~p~~------~Ka~~rrg~a~~~L  311 (312)
                      +++.+..      +.+++..|.+|..+
T Consensus       211 l~~~~~~~~~~~~~~~~~~lg~~y~~~  237 (383)
T 3ulq_A          211 YSMAEAEKQPQLMGRTLYNIGLCKNSQ  237 (383)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHcCChHHHHHHHHHHHHHHHHC
Confidence            9885533      35899999988764

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=98.00  E-value=1.4e-05  Score=77.37  Aligned_cols=82  Identities=10%  Similarity=-0.035  Sum_probs=68.7

Q ss_pred             hhhhHhhhhhHHhhhc----------HHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHcC--C
Q 021445          212 VDSIKVFGNEHYKKQD----------YKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLG--D  279 (312)
Q Consensus       212 ~~~~k~~Gn~~~~~~~----------y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~--~  279 (312)
                      ...|..+|..+.+.++          |++|+..|.++|+                  .+|....+|.+|+.++.+++  +
T Consensus        63 ~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~------------------~~pK~y~aW~hR~w~l~~l~~~~  124 (567)
T 1dce_A           63 ATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLR------------------VNPKSYGTWHHRCWLLSRLPEPN  124 (567)
T ss_dssp             HHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHH------------------HCTTCHHHHHHHHHHHHTCSSCC
T ss_pred             HHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHH------------------hCCCCHHHHHHHHHHHHHccccc
Confidence            3446677888888777          9999999999998                  66777888999999999988  6


Q ss_pred             HHHHHHHHHHHHHcCCCchHHHHHHHHHhhhh
Q 021445          280 LKGALLDTEFAMRDGDDNVKALFRQGQVSIIL  311 (312)
Q Consensus       280 ~~~Ai~~~~~al~l~p~~~Ka~~rrg~a~~~L  311 (312)
                      |++|++.|+++|++||.|..||+.|+.++..+
T Consensus       125 ~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l  156 (567)
T 1dce_A          125 WARELELCARFLEADERNFHCWDYRRFVAAQA  156 (567)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHhhccccccHHHHHHHHHHHc
Confidence            78999999999999999999998888887654

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=98.00  E-value=1.1e-05  Score=70.94  Aligned_cols=101  Identities=7%  Similarity=-0.135  Sum_probs=74.8

Q ss_pred             hhhhhHhhhhhHHhhhcHHHHHHHHHHHHHHhhh-----------ccccCCCCc-----hhhhHHHHHHHHHHhHHHHHH
Q 021445          211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDI-----------CWEKEGIDE-----GKSSSLRKTKSQIFTNSSACK  274 (312)
Q Consensus       211 ~~~~~k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~-----------~~~~~~~~~-----~~~~~~~~~~~~~~~N~a~~~  274 (312)
                      .+..+...|..+...|++++|+..|++++..-..           ........+     +......|....++.|+|.++
T Consensus       150 ~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l  229 (287)
T 3qou_A          150 NGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVAQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQL  229 (287)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             chhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHHHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHH
Confidence            3456788888899999999999888887542100           000000010     111234667788999999999


Q ss_pred             HHcCCHHHHHHHHHHHHHcCCCc--hHHHHHHHHHhhhh
Q 021445          275 LKLGDLKGALLDTEFAMRDGDDN--VKALFRQGQVSIIL  311 (312)
Q Consensus       275 ~kl~~~~~Ai~~~~~al~l~p~~--~Ka~~rrg~a~~~L  311 (312)
                      .++|++++|+..+.++|+++|++  ..++.+.+.++..+
T Consensus       230 ~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~  268 (287)
T 3qou_A          230 HQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAAL  268 (287)
T ss_dssp             HHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHH
T ss_pred             HHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHc
Confidence            99999999999999999999999  88999999988764

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}

Probab=97.97  E-value=2e-05  Score=71.76  Aligned_cols=88  Identities=17%  Similarity=0.112  Sum_probs=75.0

Q ss_pred             hhhhHhhhhhHHhhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHcCCHHHHHHHHHHHH
Q 021445          212 VDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAM  291 (312)
Q Consensus       212 ~~~~k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al  291 (312)
                      +..+...|..++..|+|++|+..|.+++++.....            ..+....++.++|.+|..+|++++|+..+.+++
T Consensus        86 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~------------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al  153 (411)
T 4a1s_A           86 SAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMN------------DRLGEAKSSGNLGNTLKVMGRFDEAAICCERHL  153 (411)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTT------------CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcc------------CchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence            45577899999999999999999999999643310            146778899999999999999999999999999


Q ss_pred             Hc------CCCchHHHHHHHHHhhhh
Q 021445          292 RD------GDDNVKALFRQGQVSIIL  311 (312)
Q Consensus       292 ~l------~p~~~Ka~~rrg~a~~~L  311 (312)
                      ++      .+....+++.+|.+|..+
T Consensus       154 ~~~~~~~~~~~~~~~~~~l~~~~~~~  179 (411)
T 4a1s_A          154 TLARQLGDRLSEGRALYNLGNVYHAK  179 (411)
T ss_dssp             HHHHHHTCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhhchHHHHHHHHHHHHHHHHc
Confidence            88      677888999999988753

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=97.96  E-value=2e-06  Score=75.57  Aligned_cols=68  Identities=18%  Similarity=0.127  Sum_probs=61.4

Q ss_pred             hhhhHhhhhhHHhhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHcCCHHHHHHHHHHHH
Q 021445          212 VDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAM  291 (312)
Q Consensus       212 ~~~~k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al  291 (312)
                      +..+...|..+++.|+|++|+..|++|++                  +.|....++.++|.+|.++|+|++|+..+.+++
T Consensus        38 ~~~~~~la~~~~~~~~~~~A~~~~~~al~------------------~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al   99 (281)
T 2c2l_A           38 AVYYTNRALCYLKMQQPEQALADCRRALE------------------LDGQSVKAHFFLGQCQLEMESYDEAIANLQRAY   99 (281)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHTT------------------SCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHH------------------hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            45578899999999999999999999999                  445567799999999999999999999999999


Q ss_pred             HcCCCc
Q 021445          292 RDGDDN  297 (312)
Q Consensus       292 ~l~p~~  297 (312)
                      +++|++
T Consensus       100 ~l~p~~  105 (281)
T 2c2l_A          100 SLAKEQ  105 (281)
T ss_dssp             HHHHHT
T ss_pred             HhCccc
Confidence            999865

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}

Probab=97.96  E-value=1.9e-05  Score=68.92  Aligned_cols=84  Identities=18%  Similarity=0.082  Sum_probs=44.5

Q ss_pred             hhhhHhhhhhHHhhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHcCCHHHHHHHHHHHH
Q 021445          212 VDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAM  291 (312)
Q Consensus       212 ~~~~k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al  291 (312)
                      +..+...|..++..|+|++|+..|+++++.-..              -......++.++|.++..+|++++|+..+.+++
T Consensus         5 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~--------------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al   70 (338)
T 3ro2_A            5 CLELALEGERLCKSGDCRAGVSFFEAAVQVGTE--------------DLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDL   70 (338)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS--------------CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHhhCcc--------------cHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            345566677777777777777777777763110              011223345555555555555555555555555


Q ss_pred             Hc------CCCchHHHHHHHHHhh
Q 021445          292 RD------GDDNVKALFRQGQVSI  309 (312)
Q Consensus       292 ~l------~p~~~Ka~~rrg~a~~  309 (312)
                      .+      .|..+.+++..|.++.
T Consensus        71 ~~~~~~~~~~~~~~~~~~l~~~~~   94 (338)
T 3ro2_A           71 TLARTIGDQLGEAKASGNLGNTLK   94 (338)
T ss_dssp             HHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred             HHhhcccccHHHHHHHHHHHHHHH
Confidence            44      3333444444444443

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}

Probab=97.93  E-value=2e-05  Score=71.21  Aligned_cols=85  Identities=18%  Similarity=0.085  Sum_probs=48.1

Q ss_pred             hhhhhHhhhhhHHhhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHcCCHHHHHHHHHHH
Q 021445          211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA  290 (312)
Q Consensus       211 ~~~~~k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~a  290 (312)
                      .+..+...|..+++.|+|++|+..|+++++.-..              -......++.++|.++..+|+|++|+..+.++
T Consensus         8 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~--------------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a   73 (406)
T 3sf4_A            8 SCLELALEGERLCKSGDCRAGVSFFEAAVQVGTE--------------DLKTLSAIYSQLGNAYFYLHDYAKALEYHHHD   73 (406)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS--------------CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcc--------------cHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence            3455667777778888888888888887774111              01122345555555555555555555555555


Q ss_pred             HHc------CCCchHHHHHHHHHhh
Q 021445          291 MRD------GDDNVKALFRQGQVSI  309 (312)
Q Consensus       291 l~l------~p~~~Ka~~rrg~a~~  309 (312)
                      +.+      .|..+.+++.+|.++.
T Consensus        74 l~~~~~~~~~~~~~~~~~~la~~~~   98 (406)
T 3sf4_A           74 LTLARTIGDQLGEAKASGNLGNTLK   98 (406)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhccccHHHHHHHHHHHHHHH
Confidence            544      2334445555555544

>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A

Probab=97.92  E-value=1.3e-05  Score=67.54  Aligned_cols=74  Identities=11%  Similarity=0.037  Sum_probs=59.4

Q ss_pred             hhhHhhhhhHHhhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHH----------------
Q 021445          213 DSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLK----------------  276 (312)
Q Consensus       213 ~~~k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~k----------------  276 (312)
                      ..+...|..+++.|+|++|+..|+++++....       +        +....++.++|.|+.+                
T Consensus        42 ~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~-------~--------~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~  106 (225)
T 2yhc_A           42 QVQLDLIYAYYKNADLPLAQAAIDRFIRLNPT-------H--------PNIDYVMYMRGLTNMALDDSALQGFFGVDRSD  106 (225)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-------C--------TTHHHHHHHHHHHHHHHHC-------------
T ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcC-------C--------CcHHHHHHHHHHHHHhhhhhhhhhhhccchhh
Confidence            45778899999999999999999999984211       1        1123367788888876                


Q ss_pred             --cCCHHHHHHHHHHHHHcCCCchHHH
Q 021445          277 --LGDLKGALLDTEFAMRDGDDNVKAL  301 (312)
Q Consensus       277 --l~~~~~Ai~~~~~al~l~p~~~Ka~  301 (312)
                        ++++++|+..+.++++.+|++..++
T Consensus       107 ~~~~~~~~A~~~~~~~l~~~P~~~~a~  133 (225)
T 2yhc_A          107 RDPQQARAAFSDFSKLVRGYPNSQYTT  133 (225)
T ss_dssp             -CCHHHHHHHHHHHHHHTTCTTCTTHH
T ss_pred             cCcHHHHHHHHHHHHHHHHCcCChhHH
Confidence              5789999999999999999998665

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}

Probab=97.91  E-value=1.8e-05  Score=73.94  Aligned_cols=79  Identities=15%  Similarity=0.126  Sum_probs=59.4

Q ss_pred             hHhhhhhHHhhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHH------HHHHhHHHHHHHH---cCCHHHHHH
Q 021445          215 IKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTK------SQIFTNSSACKLK---LGDLKGALL  285 (312)
Q Consensus       215 ~k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~------~~~~~N~a~~~~k---l~~~~~Ai~  285 (312)
                      +...|..+++.|+|++|+..|.+++..                  .+..      ..++.++|.++++   +|++++|+.
T Consensus       375 ~~~la~~~~~~~~~~~A~~~~~~a~~~------------------~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~  436 (514)
T 2gw1_A          375 PNFFAEILTDKNDFDKALKQYDLAIEL------------------ENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATN  436 (514)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHH------------------HHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHH
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHh------------------hhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHH
Confidence            445566666666666666666666662                  2222      2278899999999   999999999


Q ss_pred             HHHHHHHcCCCchHHHHHHHHHhhhh
Q 021445          286 DTEFAMRDGDDNVKALFRQGQVSIIL  311 (312)
Q Consensus       286 ~~~~al~l~p~~~Ka~~rrg~a~~~L  311 (312)
                      .+.+++.++|++..+++.+|.+|..+
T Consensus       437 ~~~~a~~~~~~~~~~~~~la~~~~~~  462 (514)
T 2gw1_A          437 LLEKASKLDPRSEQAKIGLAQMKLQQ  462 (514)
T ss_dssp             HHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHhCcccHHHHHHHHHHHHHh
Confidence            99999999999999999999888654

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}

Probab=97.91  E-value=1.6e-05  Score=70.50  Aligned_cols=85  Identities=12%  Similarity=-0.060  Sum_probs=56.1

Q ss_pred             hhHhhhhhHHhhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHcCCHHHHHHHHHHHHHc
Q 021445          214 SIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRD  293 (312)
Q Consensus       214 ~~k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~l  293 (312)
                      .+.+.|+.+.+.|+|++|+..|++|+++....     .       .......++.|+|.+|.+ ++|++|+..+.+||.+
T Consensus        78 ~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~-----g-------~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~  144 (307)
T 2ifu_A           78 AFEQAGMMLKDLQRMPEAVQYIEKASVMYVEN-----G-------TPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAV  144 (307)
T ss_dssp             HHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTT-----T-------CHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHc-----C-------CHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHH
Confidence            34455555555566666666666666543210     0       012345678889999988 9999999999999987


Q ss_pred             CCCc------hHHHHHHHHHhhhh
Q 021445          294 GDDN------VKALFRQGQVSIIL  311 (312)
Q Consensus       294 ~p~~------~Ka~~rrg~a~~~L  311 (312)
                      .|..      ..+|...|.+|..+
T Consensus       145 ~~~~~~~~~~~~~~~~lg~~~~~~  168 (307)
T 2ifu_A          145 FENEERLRQAAELIGKASRLLVRQ  168 (307)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred             HHhCCChhHHHHHHHHHHHHHHHc
Confidence            7643      57788888887654

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}

Probab=97.90  E-value=1.9e-05  Score=75.16  Aligned_cols=99  Identities=9%  Similarity=-0.023  Sum_probs=77.5

Q ss_pred             CChhhhhhhhhhhHhhhhhHHhhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHcCCHHH
Q 021445          203 NELSWWMNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKG  282 (312)
Q Consensus       203 ~~~~~~~~~~~~~k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~  282 (312)
                      +.+...++.+..+.+++..+..+|+|++|+..|+++|+.....     .     ..-.+.....+.|+|.+|..+|+|++
T Consensus       300 e~v~~~l~~a~~~le~a~~~~~qg~~~eA~~l~~~aL~~~~~~-----l-----g~~Hp~~a~~~~nLa~~y~~~g~~~e  369 (490)
T 3n71_A          300 EVVKEMIQFSKDTLEKIDKARSEGLYHEVVKLCRECLEKQEPV-----F-----ADTNLYVLRLLSIASEVLSYLQAYEE  369 (490)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTTT-----B-----CTTSHHHHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHh-----c-----CCCCHHHHHHHHHHHHHHHHhcCHHH
Confidence            3445556667777888888999999999999999999965331     1     11246678899999999999999999


Q ss_pred             HHHHHHHHHHc-----C---CCchHHHHHHHHHhhhh
Q 021445          283 ALLDTEFAMRD-----G---DDNVKALFRQGQVSIIL  311 (312)
Q Consensus       283 Ai~~~~~al~l-----~---p~~~Ka~~rrg~a~~~L  311 (312)
                      |+..+.++|.+     .   |.-+.+|.+.|.+|..+
T Consensus       370 A~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~~  406 (490)
T 3n71_A          370 ASHYARRMVDGYMKLYHHNNAQLGMAVMRAGLTNWHA  406 (490)
T ss_dssp             HHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHC
Confidence            99999999954     2   44457888888888653

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}

Probab=97.89  E-value=2.1e-05  Score=63.47  Aligned_cols=100  Identities=6%  Similarity=-0.124  Sum_probs=72.8

Q ss_pred             hhhhHhhhhhHHhhhcHHHHHHHHHHHHHHhh---------hcc-cc-CCCCc-----hhhhHHHHHHHHHHhHHHHHHH
Q 021445          212 VDSIKVFGNEHYKKQDYKMALRKYRKALRYLD---------ICW-EK-EGIDE-----GKSSSLRKTKSQIFTNSSACKL  275 (312)
Q Consensus       212 ~~~~k~~Gn~~~~~~~y~~A~~~Y~kal~~l~---------~~~-~~-~~~~~-----~~~~~~~~~~~~~~~N~a~~~~  275 (312)
                      +..+...|..+.+.|++++|+..|++++..-.         ... .. ....+     +....+.|....++.++|.++.
T Consensus        40 ~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~  119 (176)
T 2r5s_A           40 GDVKLAKADCLLETKQFELAQELLATIPLEYQDNSYKSLIAKLELHQQAAESPELKRLEQELAANPDNFELACELAVQYN  119 (176)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGCCHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHhhhccCChHHHHHHHHHHHHhhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence            45577889999999999999999988765311         000 00 00000     0111245666789999999999


Q ss_pred             HcCCHHHHHHHHHHHHHcCCCc--hHHHHHHHHHhhhh
Q 021445          276 KLGDLKGALLDTEFAMRDGDDN--VKALFRQGQVSIIL  311 (312)
Q Consensus       276 kl~~~~~Ai~~~~~al~l~p~~--~Ka~~rrg~a~~~L  311 (312)
                      ++|++++|+..+.++++++|.+  ..+++..|.++..+
T Consensus       120 ~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~  157 (176)
T 2r5s_A          120 QVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSAL  157 (176)
T ss_dssp             HTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHH
T ss_pred             HcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHh
Confidence            9999999999999999999986  56999999888754

>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}

Probab=97.87  E-value=5.2e-05  Score=67.64  Aligned_cols=74  Identities=15%  Similarity=0.022  Sum_probs=65.4

Q ss_pred             hhhhhHHhhhcH-HHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHcC--CHHHHHHHHHHHHHc
Q 021445          217 VFGNEHYKKQDY-KMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLG--DLKGALLDTEFAMRD  293 (312)
Q Consensus       217 ~~Gn~~~~~~~y-~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~--~~~~Ai~~~~~al~l  293 (312)
                      ..-.+..+.+.| ++|+..+.++|.                  ++|....++++|+.++..++  +++++++.++++|.+
T Consensus        37 ~~~~a~~~~~e~s~~aL~~t~~~L~------------------~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~   98 (306)
T 3dra_A           37 GLLLALMKAEEYSERALHITELGIN------------------ELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALD   98 (306)
T ss_dssp             HHHHHHHHTTCCSHHHHHHHHHHHH------------------HCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCCCHHHHHHHHHHHH------------------HCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHH
Confidence            333344444555 689999999999                  78889999999999999999  999999999999999


Q ss_pred             CCCchHHHHHHHHHh
Q 021445          294 GDDNVKALFRQGQVS  308 (312)
Q Consensus       294 ~p~~~Ka~~rrg~a~  308 (312)
                      +|++..+|+.|+.++
T Consensus        99 nPk~y~aW~~R~~iL  113 (306)
T 3dra_A           99 NEKNYQIWNYRQLII  113 (306)
T ss_dssp             CTTCCHHHHHHHHHH
T ss_pred             CcccHHHHHHHHHHH
Confidence            999999999999998

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}

Probab=97.86  E-value=4.2e-05  Score=68.98  Aligned_cols=88  Identities=14%  Similarity=0.157  Sum_probs=67.6

Q ss_pred             hhhhHhhhhhHHhhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHcCCHHHHHHHHHHHH
Q 021445          212 VDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAM  291 (312)
Q Consensus       212 ~~~~k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al  291 (312)
                      +..+...|..++..|+|++|+..|.+++++.....            .......++.|+|.++.++|++++|+..+.+++
T Consensus       187 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~------------~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al  254 (406)
T 3sf4_A          187 GRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFG------------DKAAERRAYSNLGNAYIFLGEFETASEYYKKTL  254 (406)
T ss_dssp             HHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTT------------CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcC------------CcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHH
Confidence            33467789999999999999999999999754321            123445688888888888888888888888888


Q ss_pred             HcCCCc------hHHHHHHHHHhhhh
Q 021445          292 RDGDDN------VKALFRQGQVSIIL  311 (312)
Q Consensus       292 ~l~p~~------~Ka~~rrg~a~~~L  311 (312)
                      .+.+..      ..+++..|.+|..+
T Consensus       255 ~~~~~~~~~~~~~~~~~~la~~~~~~  280 (406)
T 3sf4_A          255 LLARQLKDRAVEAQSCYSLGNTYTLL  280 (406)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHhCcCchHHHHHHHHHHHHHHHh
Confidence            776655      67777888777653

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}

Probab=97.84  E-value=3.8e-05  Score=56.14  Aligned_cols=48  Identities=13%  Similarity=0.017  Sum_probs=45.2

Q ss_pred             HHHHhHHHHHHHHcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHhhhh
Q 021445          264 SQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQVSIIL  311 (312)
Q Consensus       264 ~~~~~N~a~~~~kl~~~~~Ai~~~~~al~l~p~~~Ka~~rrg~a~~~L  311 (312)
                      ...+.++|.+++++|+|++|+..++++++++|.++.+|+.+|.+|..+
T Consensus         4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~   51 (111)
T 2l6j_A            4 FEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKL   51 (111)
T ss_dssp             HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHh
Confidence            457899999999999999999999999999999999999999999765

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1

Probab=97.84  E-value=6.1e-05  Score=64.84  Aligned_cols=96  Identities=15%  Similarity=0.006  Sum_probs=47.8

Q ss_pred             hhhhHhhhhhHHhhhcHHHHHHHHHHHHHHhhhcc--------ccC----CCCchhhhH-----HHHHHHHHHhHHHHHH
Q 021445          212 VDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICW--------EKE----GIDEGKSSS-----LRKTKSQIFTNSSACK  274 (312)
Q Consensus       212 ~~~~k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~--------~~~----~~~~~~~~~-----~~~~~~~~~~N~a~~~  274 (312)
                      +..+...|..++..+++++|+..|+++++. ....        -..    ..+.++...     +......++.++|.+|
T Consensus         6 ~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~-~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~   84 (273)
T 1ouv_A            6 PKELVGLGAKSYKEKDFTQAKKYFEKACDL-KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLNYSNGCHLLGNLY   84 (273)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHhCCCHHHHHHHHHHHHHC-CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence            344566677777777777777777777651 0000        000    000000000     0011334555666666


Q ss_pred             HH----cCCHHHHHHHHHHHHHcCCCchHHHHHHHHHhhh
Q 021445          275 LK----LGDLKGALLDTEFAMRDGDDNVKALFRQGQVSII  310 (312)
Q Consensus       275 ~k----l~~~~~Ai~~~~~al~l~p~~~Ka~~rrg~a~~~  310 (312)
                      ..    .+++++|+..+.++++++  ++.+++..|.+|..
T Consensus        85 ~~g~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~  122 (273)
T 1ouv_A           85 YSGQGVSQNTNKALQYYSKACDLK--YAEGCASLGGIYHD  122 (273)
T ss_dssp             HHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHH
T ss_pred             hCCCCcccCHHHHHHHHHHHHHcC--CccHHHHHHHHHHc
Confidence            66    666666666666666553  55566666655543

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=97.84  E-value=3.1e-05  Score=74.98  Aligned_cols=85  Identities=11%  Similarity=0.012  Sum_probs=70.5

Q ss_pred             hhhhhhhHhhhhhHHhhhcH-HHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHcCC--------
Q 021445          209 MNAVDSIKVFGNEHYKKQDY-KMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGD--------  279 (312)
Q Consensus       209 ~~~~~~~k~~Gn~~~~~~~y-~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~--------  279 (312)
                      ++.-..+.....++.+.++| ++|++.|.++|.                  ++|....+|.+|+.++.++++        
T Consensus        25 ~~~y~~~~~~~~~~~~~~~~~eeal~~~~~~l~------------------~nP~~~taW~~R~~~l~~l~~~~~~~~~~   86 (567)
T 1dce_A           25 LKLYQSATQAVFQKRQAGELDESVLELTSQILG------------------ANPDFATLWNCRREVLQHLETEKSPEESA   86 (567)
T ss_dssp             HHHHHHHHHHHHHHHHTTCCSHHHHHHHHHHHH------------------HCTTCHHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred             HHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH------------------HCchhHHHHHHHHHHHHhcccccchhhhh
Confidence            33333444444445555555 678999999999                  788899999999999999998        


Q ss_pred             --HHHHHHHHHHHHHcCCCchHHHHHHHHHhhhh
Q 021445          280 --LKGALLDTEFAMRDGDDNVKALFRQGQVSIIL  311 (312)
Q Consensus       280 --~~~Ai~~~~~al~l~p~~~Ka~~rrg~a~~~L  311 (312)
                        +++|++.+++||+.+|++..||+.|+.++..+
T Consensus        87 ~~~~~eL~~~~~~l~~~pK~y~aW~hR~w~l~~l  120 (567)
T 1dce_A           87 ALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRL  120 (567)
T ss_dssp             HHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTC
T ss_pred             hhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence              99999999999999999999999999998765

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}

Probab=97.79  E-value=5.1e-05  Score=72.64  Aligned_cols=79  Identities=11%  Similarity=-0.057  Sum_probs=44.3

Q ss_pred             hhhhHhhhhhHHhhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHcCCHHHHHHHHHHHH
Q 021445          212 VDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAM  291 (312)
Q Consensus       212 ~~~~k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al  291 (312)
                      +..+...|..+++.|++++|+..|.++++.                  .|....+|.+++.+|.+.|++++|++.+++++
T Consensus       373 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------------------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~  434 (597)
T 2xpi_A          373 AVTWLAVGIYYLCVNKISEARRYFSKSSTM------------------DPQFGPAWIGFAHSFAIEGEHDQAISAYTTAA  434 (597)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------------------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHHh------------------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            334556677778888888888888888762                  22223344444444444444444444444444


Q ss_pred             HcCCCchHHHHHHHHHh
Q 021445          292 RDGDDNVKALFRQGQVS  308 (312)
Q Consensus       292 ~l~p~~~Ka~~rrg~a~  308 (312)
                      +++|.+..+|+.+|.+|
T Consensus       435 ~~~~~~~~~~~~l~~~~  451 (597)
T 2xpi_A          435 RLFQGTHLPYLFLGMQH  451 (597)
T ss_dssp             HTTTTCSHHHHHHHHHH
T ss_pred             HhCccchHHHHHHHHHH
Confidence            44444444444444444

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*

Probab=97.77  E-value=5.6e-05  Score=70.73  Aligned_cols=96  Identities=8%  Similarity=-0.011  Sum_probs=72.0

Q ss_pred             hhhhhhhhhhHhhhhhHHhhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHcCCHHHHHH
Q 021445          206 SWWMNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALL  285 (312)
Q Consensus       206 ~~~~~~~~~~k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~  285 (312)
                      ...+..+....+++...-..|+|++|+..|+++|+.....     .     ..-.+.....+.|+|.+|..+|+|++|+.
T Consensus       292 ~~~~~~~~~~le~~~~~~~~g~~~eA~~~~~~~L~i~~~~-----l-----g~~Hp~~a~~~~nLa~~y~~~g~~~eA~~  361 (433)
T 3qww_A          292 RDMVRYARNVIEEFRRAKHYKSPSELLEICELSQEKMSSV-----F-----EDSNVYMLHMMYQAMGVCLYMQDWEGALK  361 (433)
T ss_dssp             HHHHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHTTT-----B-----CTTSHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhhhccCHHHHHHHHHHHHHHhhCc-----c-----ChhchHHHHHHHHHHHHHHhhcCHHHHHH
Confidence            3334444555566666667789999999999999964331     1     11246678899999999999999999999


Q ss_pred             HHHHHHHc--------CCCchHHHHHHHHHhhhh
Q 021445          286 DTEFAMRD--------GDDNVKALFRQGQVSIIL  311 (312)
Q Consensus       286 ~~~~al~l--------~p~~~Ka~~rrg~a~~~L  311 (312)
                      .+.++|.+        .|.-+..|.+.|.+|..+
T Consensus       362 ~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~q  395 (433)
T 3qww_A          362 YGQKIIKPYSKHYPVYSLNVASMWLKLGRLYMGL  395 (433)
T ss_dssp             HHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhc
Confidence            99999954        345557888888888654

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}

Probab=97.77  E-value=7.6e-05  Score=64.96  Aligned_cols=88  Identities=17%  Similarity=0.160  Sum_probs=72.1

Q ss_pred             hhhhHhhhhhHHhhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHcCCHHHHHHHHHHHH
Q 021445          212 VDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAM  291 (312)
Q Consensus       212 ~~~~k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al  291 (312)
                      +..+...|..++..|+|++|+..|.+++.+....            ...+....++.++|.++..+|++++|+..+.+++
T Consensus        43 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~------------~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al  110 (338)
T 3ro2_A           43 SAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTI------------GDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHL  110 (338)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH------------TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcc------------cccHHHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence            5567889999999999999999999999964331            0245667899999999999999999999999999


Q ss_pred             HcCCCc------hHHHHHHHHHhhhh
Q 021445          292 RDGDDN------VKALFRQGQVSIIL  311 (312)
Q Consensus       292 ~l~p~~------~Ka~~rrg~a~~~L  311 (312)
                      ++.+..      ..+++..|.++..+
T Consensus       111 ~~~~~~~~~~~~~~~~~~l~~~~~~~  136 (338)
T 3ro2_A          111 DISRELNDKVGEARALYNLGNVYHAK  136 (338)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhcCchHHHHHHHHHHHHHHHc
Confidence            886543      44888888887653

>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}

Probab=97.76  E-value=5.4e-05  Score=67.50  Aligned_cols=29  Identities=7%  Similarity=-0.301  Sum_probs=24.9

Q ss_pred             hhhhHhhhhhHHhhh--cHHHHHHHHHHHHH
Q 021445          212 VDSIKVFGNEHYKKQ--DYKMALRKYRKALR  240 (312)
Q Consensus       212 ~~~~k~~Gn~~~~~~--~y~~A~~~Y~kal~  240 (312)
                      ...+..+|..+...+  ++++|+..+.++|.
T Consensus        67 ~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~   97 (306)
T 3dra_A           67 YTIWIYRFNILKNLPNRNLYDELDWCEEIAL   97 (306)
T ss_dssp             HHHHHHHHHHHHTCTTSCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcccccHHHHHHHHHHHHH
Confidence            444678888888888  99999999999997

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}

Probab=97.75  E-value=6.7e-05  Score=68.09  Aligned_cols=90  Identities=10%  Similarity=-0.090  Sum_probs=67.2

Q ss_pred             hhhhhHhhhhhHHhhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHcCCHHHHHHHHHHH
Q 021445          211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA  290 (312)
Q Consensus       211 ~~~~~k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~a  290 (312)
                      .+..+...|..++..|++.+|+..|.+|+++.....           ...+....++.|+|.+|..+|+|++|++.+.+|
T Consensus       140 ~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~-----------~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~a  208 (378)
T 3q15_A          140 KAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHP-----------LYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAA  208 (378)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTST-----------TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCC-----------CchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence            455566677777777778888888887777643310           013356789999999999999999999999999


Q ss_pred             HHcCC------CchHHHHHHHHHhhhh
Q 021445          291 MRDGD------DNVKALFRQGQVSIIL  311 (312)
Q Consensus       291 l~l~p------~~~Ka~~rrg~a~~~L  311 (312)
                      +++.+      ....+++..|.+|..+
T Consensus       209 l~~~~~~~~~~~~~~~~~~lg~~y~~~  235 (378)
T 3q15_A          209 LELAMDIQNDRFIAISLLNIANSYDRS  235 (378)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHHHHHC
Confidence            98632      2356888889888754

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A

Probab=97.72  E-value=9.7e-05  Score=51.82  Aligned_cols=50  Identities=18%  Similarity=0.189  Sum_probs=46.3

Q ss_pred             HHHHHHhHHHHHHHHcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHhhhh
Q 021445          262 TKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQVSIIL  311 (312)
Q Consensus       262 ~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~l~p~~~Ka~~rrg~a~~~L  311 (312)
                      ....++.++|.+++++++|++|+..+.++++++|.+..+++.+|.++..+
T Consensus         7 ~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~   56 (91)
T 1na3_A            7 NSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQ   56 (91)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred             ccHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH
Confidence            35678999999999999999999999999999999999999999998764

>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}

Probab=97.71  E-value=6.3e-05  Score=54.67  Aligned_cols=68  Identities=10%  Similarity=0.029  Sum_probs=60.3

Q ss_pred             hhhhHhhhhhHHhhhc---HHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHcCCHHHHHHHHH
Q 021445          212 VDSIKVFGNEHYKKQD---YKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTE  288 (312)
Q Consensus       212 ~~~~k~~Gn~~~~~~~---y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~  288 (312)
                      +..+...|..++..++   ..+|...+.+||.                  ++|....++..+|..+++.|+|++|+..+.
T Consensus         6 ~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~------------------~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~   67 (93)
T 3bee_A            6 ATQLAAKATTLYYLHKQAMTDEVSLLLEQALQ------------------LEPYNEAALSLIANDHFISFRFQEAIDTWV   67 (93)
T ss_dssp             HHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHH------------------HCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH------------------HCcCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            4567788888875555   7999999999999                  788889999999999999999999999999


Q ss_pred             HHHHcCCCc
Q 021445          289 FAMRDGDDN  297 (312)
Q Consensus       289 ~al~l~p~~  297 (312)
                      ++|+.+|..
T Consensus        68 ~~l~~~p~~   76 (93)
T 3bee_A           68 LLLDSNDPN   76 (93)
T ss_dssp             HHHTCCCTT
T ss_pred             HHHhhCCCC
Confidence            999999973

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=97.69  E-value=5.9e-05  Score=66.46  Aligned_cols=72  Identities=10%  Similarity=-0.043  Sum_probs=62.7

Q ss_pred             hhhhHhhhhhHHhhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHcCCHHH-HHHHHHHH
Q 021445          212 VDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKG-ALLDTEFA  290 (312)
Q Consensus       212 ~~~~k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~-Ai~~~~~a  290 (312)
                      +..+...|..+.+.|+|++|...|++||+                  ++|....++.|++.++..+|++.+ +.+..+++
T Consensus       200 ~~~~~~la~~~~~~g~~~eA~~~l~~al~------------------~~p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~  261 (291)
T 3mkr_A          200 LLLLNGQAACHMAQGRWEAAEGVLQEALD------------------KDSGHPETLINLVVLSQHLGKPPEVTNRYLSQL  261 (291)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHH------------------HCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHH------------------hCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence            34567889999999999999999999999                  667778899999999999999987 56888999


Q ss_pred             HHcCCCchHHH
Q 021445          291 MRDGDDNVKAL  301 (312)
Q Consensus       291 l~l~p~~~Ka~  301 (312)
                      ++++|+++.+.
T Consensus       262 ~~~~P~~~~~~  272 (291)
T 3mkr_A          262 KDAHRSHPFIK  272 (291)
T ss_dssp             HHHCTTCHHHH
T ss_pred             HHhCCCChHHH
Confidence            99999998644

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*

Probab=97.66  E-value=7.3e-05  Score=69.92  Aligned_cols=73  Identities=10%  Similarity=0.007  Sum_probs=61.0

Q ss_pred             hhhhhHhhhhhHHhhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHcCCHHHHHHHHHHH
Q 021445          211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA  290 (312)
Q Consensus       211 ~~~~~k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~a  290 (312)
                      .+..+.+.|..+..+|+|++|+..|+++|+.....-          ..-.|.....|+|+|..|..+|+|++|+..+.+|
T Consensus       339 ~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~l----------G~~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~A  408 (433)
T 3qww_A          339 MLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHY----------PVYSLNVASMWLKLGRLYMGLENKAAGEKALKKA  408 (433)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHS----------CSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHc----------CCCChHHHHHHHHHHHHHHhccCHHHHHHHHHHH
Confidence            455567889999999999999999999999754420          1124677889999999999999999999999999


Q ss_pred             HHc
Q 021445          291 MRD  293 (312)
Q Consensus       291 l~l  293 (312)
                      |++
T Consensus       409 l~i  411 (433)
T 3qww_A          409 IAI  411 (433)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            954

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7

Probab=97.66  E-value=9.8e-05  Score=65.19  Aligned_cols=66  Identities=9%  Similarity=-0.041  Sum_probs=52.7

Q ss_pred             HHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHcCCHHHHHHHHHHHHHcCCCchH-HHHHHHH
Q 021445          228 YKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVK-ALFRQGQ  306 (312)
Q Consensus       228 y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~l~p~~~K-a~~rrg~  306 (312)
                      +++|+..|++|++.+                 .|....+|.+++..+.++|++++|+..++++|+++|.+.. +|...|.
T Consensus        80 ~~~A~~~~~rAl~~~-----------------~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~  142 (308)
T 2ond_A           80 SDEAANIYERAISTL-----------------LKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMK  142 (308)
T ss_dssp             HHHHHHHHHHHHTTT-----------------TTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHh-----------------CcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccccCccHHHHHHHH
Confidence            499999999999832                 2334568888888888888888888888888888888876 8888887


Q ss_pred             Hhhh
Q 021445          307 VSII  310 (312)
Q Consensus       307 a~~~  310 (312)
                      ++..
T Consensus       143 ~~~~  146 (308)
T 2ond_A          143 FARR  146 (308)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            7643

>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A

Probab=97.63  E-value=0.00014  Score=63.55  Aligned_cols=71  Identities=15%  Similarity=0.022  Sum_probs=58.1

Q ss_pred             hhhhhHhhhhhHHhhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHcC-CHHHHHHHHHH
Q 021445          211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLG-DLKGALLDTEF  289 (312)
Q Consensus       211 ~~~~~k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~-~~~~Ai~~~~~  289 (312)
                      .+..+.+.|..+++.|+|++|+..|.+||++.....            .......+|.|+|.||.++| .+++|++++.+
T Consensus       195 ~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~------------~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~  262 (293)
T 3u3w_A          195 DVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRIN------------SMALIGQLYYQRGECLRKLEYEEAEIEDAYKK  262 (293)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT------------BCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcC------------cHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHH
Confidence            455678999999999999999999999999643210            11234779999999999999 57999999999


Q ss_pred             HHHc
Q 021445          290 AMRD  293 (312)
Q Consensus       290 al~l  293 (312)
                      |+.+
T Consensus       263 Al~i  266 (293)
T 3u3w_A          263 ASFF  266 (293)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            9965

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}

Probab=97.63  E-value=0.00014  Score=58.96  Aligned_cols=90  Identities=16%  Similarity=0.088  Sum_probs=68.4

Q ss_pred             hhhhhHhhhhhHHhhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHcCCHHHHHHHHHHH
Q 021445          211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA  290 (312)
Q Consensus       211 ~~~~~k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~a  290 (312)
                      .+..+...|..++..|+|++|+..|.+++.++...+     +      .......++.|+|.++..+|++++|+..+.++
T Consensus        65 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~-----~------~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a  133 (203)
T 3gw4_A           65 EHRALHQVGMVERMAGNWDAARRCFLEERELLASLP-----E------DPLAASANAYEVATVALHFGDLAGARQEYEKS  133 (203)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSC-----C------CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcC-----c------cHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence            455677889999999999999999999999754321     0      01245678999999999999999999999999


Q ss_pred             HHcCCC------chHHHHHHHHHhhhh
Q 021445          291 MRDGDD------NVKALFRQGQVSIIL  311 (312)
Q Consensus       291 l~l~p~------~~Ka~~rrg~a~~~L  311 (312)
                      +.+.+.      ...++...|.++..+
T Consensus       134 l~~~~~~~~~~~~~~~~~~la~~~~~~  160 (203)
T 3gw4_A          134 LVYAQQADDQVAIACAFRGLGDLAQQE  160 (203)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHhccchHHHHHHHHHHHHHHHHC
Confidence            965321      133456777776543

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}

Probab=97.62  E-value=0.00012  Score=69.50  Aligned_cols=89  Identities=9%  Similarity=-0.072  Sum_probs=68.2

Q ss_pred             hhhhhHhhhhhHHhhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHcCCHHHHHHHHHHH
Q 021445          211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA  290 (312)
Q Consensus       211 ~~~~~k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~a  290 (312)
                      .+..+.+.|..+..+|+|++|+..|+++|+.....          ...-.|.....+.|+|..|..+|+|++|+..+.+|
T Consensus       350 ~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~----------lG~~Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~A  419 (490)
T 3n71_A          350 VLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKL----------YHHNNAQLGMAVMRAGLTNWHAGHIEVGHGMICKA  419 (490)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH----------SCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHH----------cCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence            45567788999999999999999999999875432          11124677889999999999999999999999999


Q ss_pred             HHc-----CCCch---HHHHHHHHHhh
Q 021445          291 MRD-----GDDNV---KALFRQGQVSI  309 (312)
Q Consensus       291 l~l-----~p~~~---Ka~~rrg~a~~  309 (312)
                      |.+     -|+++   +.+-.+++++.
T Consensus       420 l~i~~~~lG~~Hp~~~~~~~~l~~~~~  446 (490)
T 3n71_A          420 YAILLVTHGPSHPITKDLEAMRMQTEM  446 (490)
T ss_dssp             HHHHHHHTCTTSHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhCCCChHHHHHHHHHHHHHH
Confidence            954     45553   34444445543

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1

Probab=97.60  E-value=0.00021  Score=61.44  Aligned_cols=46  Identities=11%  Similarity=-0.124  Sum_probs=42.0

Q ss_pred             HHHHHhHHHHHHHH----cCCHHHHHHHHHHHHHcCCCchHHHHHHHHHhhh
Q 021445          263 KSQIFTNSSACKLK----LGDLKGALLDTEFAMRDGDDNVKALFRQGQVSII  310 (312)
Q Consensus       263 ~~~~~~N~a~~~~k----l~~~~~Ai~~~~~al~l~p~~~Ka~~rrg~a~~~  310 (312)
                      ...++.|+|.+|.+    ++++++|+..+.++++++  +..+++..|.+|..
T Consensus       109 ~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~  158 (273)
T 1ouv_A          109 YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN--DGDGCTILGSLYDA  158 (273)
T ss_dssp             CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHH
T ss_pred             CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC--cHHHHHHHHHHHHc
Confidence            46789999999999    999999999999999986  78899999999875

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}

Probab=97.60  E-value=0.00041  Score=60.61  Aligned_cols=89  Identities=13%  Similarity=-0.045  Sum_probs=68.7

Q ss_pred             hhhhhHhhhhhHHhhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHcCCHHHHHHHHHHH
Q 021445          211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA  290 (312)
Q Consensus       211 ~~~~~k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~a  290 (312)
                      ....+.+++..++..++|++|+..|.++++...       ..     .........+.++|.++..+++|++|+..+.+|
T Consensus        74 ~~~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~-------~~-----~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a  141 (293)
T 2qfc_A           74 RKKQFKDQVIMLCKQKRYKEIYNKVWNELKKEE-------YH-----PEFQQFLQWQYYVAAYVLKKVDYEYCILELKKL  141 (293)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCC-------CC-----HHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhhHHHHHHHHHHHhcccc-------CC-----hhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHH
Confidence            455678899999999999999999999998421       11     122334556778999999999999999999999


Q ss_pred             HHcCCCc------hHHHHHHHHHhhhh
Q 021445          291 MRDGDDN------VKALFRQGQVSIIL  311 (312)
Q Consensus       291 l~l~p~~------~Ka~~rrg~a~~~L  311 (312)
                      |.+.+..      +.+|+..|.+|..+
T Consensus       142 l~~~~~~~~~~~~~~~~~~lg~~y~~~  168 (293)
T 2qfc_A          142 LNQQLTGIDVYQNLYIENAIANIYAEN  168 (293)
T ss_dssp             HTTCCCSSCTTHHHHHHHHHHHHHHHT
T ss_pred             HHHHhcCCchHHHHHHHHHHHHHHHHc
Confidence            9775543      56888888888654

>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}

Probab=97.59  E-value=0.00018  Score=60.04  Aligned_cols=78  Identities=12%  Similarity=-0.123  Sum_probs=62.2

Q ss_pred             hhHhhhhhHHh----hhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHH--HHHHHHhHHHHHHHH----cCCHHHH
Q 021445          214 SIKVFGNEHYK----KQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRK--TKSQIFTNSSACKLK----LGDLKGA  283 (312)
Q Consensus       214 ~~k~~Gn~~~~----~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~--~~~~~~~N~a~~~~k----l~~~~~A  283 (312)
                      .+...|..++.    .+++++|+..|++|++                  ..+  ....++.|++.+|..    .+++++|
T Consensus        87 a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~------------------~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A  148 (212)
T 3rjv_A           87 GEIVLARVLVNRQAGATDVAHAITLLQDAAR------------------DSESDAAVDAQMLLGLIYASGVHGPEDDVKA  148 (212)
T ss_dssp             HHHHHHHHHTCGGGSSCCHHHHHHHHHHHTS------------------STTSHHHHHHHHHHHHHHHHTSSSSCCHHHH
T ss_pred             HHHHHHHHHHcCCCCccCHHHHHHHHHHHHH------------------cCCCcchHHHHHHHHHHHHcCCCCCCCHHHH
Confidence            34556666665    6778888888888877                  222  346789999999999    8899999


Q ss_pred             HHHHHHHHHcCCCchHHHHHHHHHhhh
Q 021445          284 LLDTEFAMRDGDDNVKALFRQGQVSII  310 (312)
Q Consensus       284 i~~~~~al~l~p~~~Ka~~rrg~a~~~  310 (312)
                      +..+.+|+++ |.++.|++..|.+|..
T Consensus       149 ~~~~~~A~~~-~~~~~a~~~Lg~~y~~  174 (212)
T 3rjv_A          149 SEYFKGSSSL-SRTGYAEYWAGMMFQQ  174 (212)
T ss_dssp             HHHHHHHHHT-SCTTHHHHHHHHHHHH
T ss_pred             HHHHHHHHHc-CCCHHHHHHHHHHHHc
Confidence            9999999998 6788899999998864

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*

Probab=97.59  E-value=0.00013  Score=68.07  Aligned_cols=91  Identities=9%  Similarity=0.074  Sum_probs=70.9

Q ss_pred             hhhhhHhhhhhHHhhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHcCCHHHHHHHHHHH
Q 021445          211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA  290 (312)
Q Consensus       211 ~~~~~k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~a  290 (312)
                      .+..+.+.|..+..+|+|++|+..|.++|......-          ....|.....++|+|..|..+|+|++|+..+.+|
T Consensus       328 ~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~l----------g~~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~A  397 (429)
T 3qwp_A          328 QLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFF----------PGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLA  397 (429)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHS----------CSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHc----------CCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence            456677888999999999999999999999764421          1124677889999999999999999999999999


Q ss_pred             HHc-----CCCch---HHHHHHHHHhhhh
Q 021445          291 MRD-----GDDNV---KALFRQGQVSIIL  311 (312)
Q Consensus       291 l~l-----~p~~~---Ka~~rrg~a~~~L  311 (312)
                      |++     -|+++   +++-.++.|+..|
T Consensus       398 l~i~~~~lG~~Hp~~~~~~~~l~~~~~e~  426 (429)
T 3qwp_A          398 FDIMRVTHGREHSLIEDLILLLEECDANI  426 (429)
T ss_dssp             HHHHHHHTCTTSHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhcCCCChHHHHHHHHHHHHHHHH
Confidence            954     34443   4555666666544

>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*

Probab=97.58  E-value=0.00037  Score=63.13  Aligned_cols=68  Identities=9%  Similarity=-0.011  Sum_probs=53.6

Q ss_pred             hcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHcC-CHHHHHHHHHHHHHcCCCchHHHHHH
Q 021445          226 QDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLG-DLKGALLDTEFAMRDGDDNVKALFRQ  304 (312)
Q Consensus       226 ~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~-~~~~Ai~~~~~al~l~p~~~Ka~~rr  304 (312)
                      +..++|+..+.++|.                  ++|....++++|+.+...++ .+++++..++++|..+|++..+|+.|
T Consensus        68 e~se~AL~lt~~~L~------------------~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR  129 (349)
T 3q7a_A           68 EKSERALELTEIIVR------------------MNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHR  129 (349)
T ss_dssp             CCSHHHHHHHHHHHH------------------HCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHH
T ss_pred             CCCHHHHHHHHHHHH------------------hCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHH
Confidence            444678888888888                  66777778888888888888 48888888888888888888888888


Q ss_pred             HHHhhhh
Q 021445          305 GQVSIIL  311 (312)
Q Consensus       305 g~a~~~L  311 (312)
                      +.++..+
T Consensus       130 ~wlL~~l  136 (349)
T 3q7a_A          130 LLLLDRI  136 (349)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHh
Confidence            8777654

>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}

Probab=97.58  E-value=0.00013  Score=64.17  Aligned_cols=81  Identities=6%  Similarity=-0.111  Sum_probs=64.2

Q ss_pred             hhHhhhhhHHhhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHH-HHHHHHhHHHHHHHHcCCHHHHHHHHHHHHH
Q 021445          214 SIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRK-TKSQIFTNSSACKLKLGDLKGALLDTEFAMR  292 (312)
Q Consensus       214 ~~k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~  292 (312)
                      .....|..+++.++|.+|+..|++++..-                 .+ ....++.+++.++.++|++++|+..+++++.
T Consensus       137 ~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-----------------d~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~  199 (282)
T 4f3v_A          137 VAWMKAVVYGAAERWTDVIDQVKSAGKWP-----------------DKFLAGAAGVAHGVAAANLALFTEAERRLTEAND  199 (282)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHTTGGGCS-----------------CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHhhccC-----------------CcccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhc
Confidence            55778888999999999999888776521                 12 2245889999999999999999999999986


Q ss_pred             cC--CC-chHHHHHHHHHhhhh
Q 021445          293 DG--DD-NVKALFRQGQVSIIL  311 (312)
Q Consensus       293 l~--p~-~~Ka~~rrg~a~~~L  311 (312)
                      ..  |. ...+++++|.|+..+
T Consensus       200 g~~~P~~~~da~~~~glaL~~l  221 (282)
T 4f3v_A          200 SPAGEACARAIAWYLAMARRSQ  221 (282)
T ss_dssp             STTTTTTHHHHHHHHHHHHHHH
T ss_pred             CCCCccccHHHHHHHHHHHHHc
Confidence            54  55 678999999998765

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*

Probab=97.53  E-value=0.00018  Score=67.20  Aligned_cols=91  Identities=11%  Similarity=0.066  Sum_probs=70.3

Q ss_pred             hhhhhHhhhhhHHhhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHcCCHHHHHHHHHHH
Q 021445          211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA  290 (312)
Q Consensus       211 ~~~~~k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~a  290 (312)
                      .++.+......+.++|+|++|+..|+++|+.....     .     ..-.+.....+.|+|.+|..+|+|++|+..+.++
T Consensus       286 ~~~~ll~~ie~~~~~g~~~~a~~~~~~~L~~~~~~-----l-----g~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~  355 (429)
T 3qwp_A          286 EVQESLKKIEELKAHWKWEQVLAMCQAIISSNSER-----L-----PDINIYQLKVLDCAMDACINLGLLEEALFYGTRT  355 (429)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCSSCC-----C-----CTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhccHHHHHHHHHHHHHhccCc-----C-----CccchHHHHHHHHHHHHHHhhccHHHHHHHHHHH
Confidence            45556666777888999999999999999843221     1     1134667889999999999999999999999999


Q ss_pred             HHc--------CCCchHHHHHHHHHhhhh
Q 021445          291 MRD--------GDDNVKALFRQGQVSIIL  311 (312)
Q Consensus       291 l~l--------~p~~~Ka~~rrg~a~~~L  311 (312)
                      |.+        .|.-+..|++.|.+|..+
T Consensus       356 L~i~~~~lg~~Hp~~a~~l~nLa~~~~~~  384 (429)
T 3qwp_A          356 MEPYRIFFPGSHPVRGVQVMKVGKLQLHQ  384 (429)
T ss_dssp             HHHHHHHSCSSCHHHHHHHHHHHHHHHHT
T ss_pred             HHhHHHHcCCCChHHHHHHHHHHHHHHhc
Confidence            944        344557888888888653

>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*

Probab=97.50  E-value=0.00016  Score=65.48  Aligned_cols=82  Identities=6%  Similarity=-0.138  Sum_probs=72.4

Q ss_pred             hhhhHhhhhhHHhhh-cHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHc-C-CHHHHHHHHH
Q 021445          212 VDSIKVFGNEHYKKQ-DYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKL-G-DLKGALLDTE  288 (312)
Q Consensus       212 ~~~~k~~Gn~~~~~~-~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl-~-~~~~Ai~~~~  288 (312)
                      ...+..++..+...+ .+++|+..+.++|.                  .+|....++.+|..++.++ + +++++++.|+
T Consensus        88 ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~------------------~nPKny~aW~hR~wlL~~l~~~~~~~EL~~~~  149 (349)
T 3q7a_A           88 YTVWQYRFSLLTSLNKSLEDELRLMNEFAV------------------QNLKSYQVWHHRLLLLDRISPQDPVSEIEYIH  149 (349)
T ss_dssp             HHHHHHHHHHHHHTTCCHHHHHHHHHHHHH------------------TTCCCHHHHHHHHHHHHHHCCSCCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhhhHHHHHHHHHHHHH------------------hCCCcHHHHHHHHHHHHHhcCCChHHHHHHHH
Confidence            344677888888888 59999999999998                  6677889999999999999 8 9999999999


Q ss_pred             HHHHcCCCchHHHHHHHHHhhhh
Q 021445          289 FAMRDGDDNVKALFRQGQVSIIL  311 (312)
Q Consensus       289 ~al~l~p~~~Ka~~rrg~a~~~L  311 (312)
                      ++|+++|.|.-||+.|+.++..+
T Consensus       150 k~L~~dpkNy~AW~~R~wvl~~l  172 (349)
T 3q7a_A          150 GSLLPDPKNYHTWAYLHWLYSHF  172 (349)
T ss_dssp             HHTSSCTTCHHHHHHHHHHHHHH
T ss_pred             HHHHhCCCCHHHHHHHHHHHHHh
Confidence            99999999999999999887654

>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*

Probab=97.50  E-value=0.00032  Score=63.09  Aligned_cols=81  Identities=10%  Similarity=-0.034  Sum_probs=58.9

Q ss_pred             hhhHhhhhhHHhhhc----------HHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHcCC--H
Q 021445          213 DSIKVFGNEHYKKQD----------YKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGD--L  280 (312)
Q Consensus       213 ~~~k~~Gn~~~~~~~----------y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~--~  280 (312)
                      ..+.-++..+...++          +++++..+.++|.                  .+|....++.+|+.+..++++  +
T Consensus        65 taWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~------------------~~PKny~aW~hR~wlL~~l~~~~~  126 (331)
T 3dss_A           65 TLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLR------------------VNPKSYGTWHHRCWLLSRLPEPNW  126 (331)
T ss_dssp             HHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHH------------------HCTTCHHHHHHHHHHHHHCSSCCH
T ss_pred             HHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHH------------------hCCCCHHHHHHHHHHHhccCcccH
Confidence            334555555554444          7788888888887                  566677788888888888874  7


Q ss_pred             HHHHHHHHHHHHcCCCchHHHHHHHHHhhhh
Q 021445          281 KGALLDTEFAMRDGDDNVKALFRQGQVSIIL  311 (312)
Q Consensus       281 ~~Ai~~~~~al~l~p~~~Ka~~rrg~a~~~L  311 (312)
                      ++++..|+++|++||.|.-||..|+.++..+
T Consensus       127 ~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l  157 (331)
T 3dss_A          127 ARELELCARFLEADERNFHCWDYRRFVAAQA  157 (331)
T ss_dssp             HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh
Confidence            8888888888888888888888887776543

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7

Probab=97.49  E-value=0.00012  Score=64.65  Aligned_cols=71  Identities=8%  Similarity=0.093  Sum_probs=41.2

Q ss_pred             hhHhhhhhHHhhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHH-HHhHHHHHHHHcCCHHHHHHHHHHHHH
Q 021445          214 SIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQ-IFTNSSACKLKLGDLKGALLDTEFAMR  292 (312)
Q Consensus       214 ~~k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~N~a~~~~kl~~~~~Ai~~~~~al~  292 (312)
                      .+...|..+.+.|++++|...|+++|+.-                  |.... +|.+++.++.++|++++|+..+++|++
T Consensus       101 ~~~~~~~~~~~~~~~~~A~~~~~~al~~~------------------p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~  162 (308)
T 2ond_A          101 LYFAYADYEESRMKYEKVHSIYNRLLAIE------------------DIDPTLVYIQYMKFARRAEGIKSGRMIFKKARE  162 (308)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHTSS------------------SSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHhcc------------------ccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence            45667777777888888888888888721                  11111 455555555555555555555555555


Q ss_pred             cCCCchHHHH
Q 021445          293 DGDDNVKALF  302 (312)
Q Consensus       293 l~p~~~Ka~~  302 (312)
                      ++|.+..+|+
T Consensus       163 ~~p~~~~~~~  172 (308)
T 2ond_A          163 DARTRHHVYV  172 (308)
T ss_dssp             STTCCTHHHH
T ss_pred             cCCCCHHHHH
Confidence            5554444444

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}

Probab=97.47  E-value=0.00023  Score=51.09  Aligned_cols=45  Identities=18%  Similarity=0.134  Sum_probs=42.1

Q ss_pred             HhHHHHHHHHcCCHHHHHHHHHHHHHcCCCchH-HHHHHHHHhhhh
Q 021445          267 FTNSSACKLKLGDLKGALLDTEFAMRDGDDNVK-ALFRQGQVSIIL  311 (312)
Q Consensus       267 ~~N~a~~~~kl~~~~~Ai~~~~~al~l~p~~~K-a~~rrg~a~~~L  311 (312)
                      ..++|.+++++++|++|+..++++++++|.+.. +|+.+|.+|..+
T Consensus         3 ~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~   48 (99)
T 2kc7_A            3 QLKTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKL   48 (99)
T ss_dssp             THHHHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHc
Confidence            358999999999999999999999999999999 999999999765

>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}

Probab=97.45  E-value=0.00021  Score=59.63  Aligned_cols=100  Identities=15%  Similarity=0.016  Sum_probs=70.5

Q ss_pred             hhhhhHhhhhhHHhhhcHHHHHHHHHHHHHHhhh--------ccccC--CCCchhhh-----HHHHHHHHHHhHHHHHHH
Q 021445          211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDI--------CWEKE--GIDEGKSS-----SLRKTKSQIFTNSSACKL  275 (312)
Q Consensus       211 ~~~~~k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~--------~~~~~--~~~~~~~~-----~~~~~~~~~~~N~a~~~~  275 (312)
                      .+..+...|..++..+++++|+..|++|++.=..        .-...  +.+.++..     ..++....++.|++.+|.
T Consensus        17 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~A~~~g~~~a~~~Lg~~y~   96 (212)
T 3rjv_A           17 DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQGDGDALALLAQLKIRNPQQADYPQARQLAEKAVEAGSKSGEIVLARVLV   96 (212)
T ss_dssp             CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCHHHHHHHHHHTTSSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred             CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence            4566788899999999999999999999863110        00011  00222211     123445667888888888


Q ss_pred             H----cCCHHHHHHHHHHHHHcCC--CchHHHHHHHHHhhh
Q 021445          276 K----LGDLKGALLDTEFAMRDGD--DNVKALFRQGQVSII  310 (312)
Q Consensus       276 k----l~~~~~Ai~~~~~al~l~p--~~~Ka~~rrg~a~~~  310 (312)
                      .    .+++++|+..+.+|++..+  .++.|++..|.+|..
T Consensus        97 ~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~  137 (212)
T 3rjv_A           97 NRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYAS  137 (212)
T ss_dssp             CGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHH
T ss_pred             cCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHc
Confidence            8    8889999999999998887  458899998888875

>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*

Probab=97.44  E-value=0.00041  Score=62.39  Aligned_cols=82  Identities=7%  Similarity=-0.077  Sum_probs=72.3

Q ss_pred             hhhhHhhhhhHHhhh--cHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHcCC-HHHHHHHHH
Q 021445          212 VDSIKVFGNEHYKKQ--DYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGD-LKGALLDTE  288 (312)
Q Consensus       212 ~~~~k~~Gn~~~~~~--~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~-~~~Ai~~~~  288 (312)
                      ...|..++..+.+.+  .|++++..+.++|+                  .+|....++.+|+.+..+++. +++++++++
T Consensus       108 y~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~------------------~dprNy~AW~~R~~vl~~l~~~~~eel~~~~  169 (331)
T 3dss_A          108 YGTWHHRCWLLSRLPEPNWARELELCARFLE------------------ADERNFHCWDYRRFVAAQAAVAPAEELAFTD  169 (331)
T ss_dssp             HHHHHHHHHHHHHCSSCCHHHHHHHHHHHHH------------------HCTTCHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHhccCcccHHHHHHHHHHHHH------------------hCCCCHHHHHHHHHHHHHhCcCHHHHHHHHH
Confidence            344566777777766  49999999999999                  778889999999999999999 699999999


Q ss_pred             HHHHcCCCchHHHHHHHHHhhhh
Q 021445          289 FAMRDGDDNVKALFRQGQVSIIL  311 (312)
Q Consensus       289 ~al~l~p~~~Ka~~rrg~a~~~L  311 (312)
                      ++|+.+|.|.-||..|+.++..+
T Consensus       170 ~~I~~~p~N~SAW~~R~~ll~~l  192 (331)
T 3dss_A          170 SLITRNFSNYSSWHYRSCLLPQL  192 (331)
T ss_dssp             HHHHHCSCCHHHHHHHHHHHHHH
T ss_pred             HHHHHCCCCHHHHHHHHHHHHHh
Confidence            99999999999999999988765

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2

Probab=97.37  E-value=0.0011  Score=59.42  Aligned_cols=86  Identities=9%  Similarity=-0.020  Sum_probs=62.5

Q ss_pred             hHhhhhhHHhhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 021445          215 IKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDG  294 (312)
Q Consensus       215 ~k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~l~  294 (312)
                      +...|..++..|+|++|+..|.+++.........          ..+....++.|+|.++..+|++++|+..+.+++.+.
T Consensus        96 ~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~----------~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  165 (373)
T 1hz4_A           96 LIQQSEILFAQGFLQTAWETQEKAFQLINEQHLE----------QLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVL  165 (373)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCT----------TSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccc----------cCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh
Confidence            4556777778888888888888888754321000          013456788999999999999999999999999887


Q ss_pred             CC-----chHHHHHHHHHhhh
Q 021445          295 DD-----NVKALFRQGQVSII  310 (312)
Q Consensus       295 p~-----~~Ka~~rrg~a~~~  310 (312)
                      +.     ...+++..|.++..
T Consensus       166 ~~~~~~~~~~~~~~la~~~~~  186 (373)
T 1hz4_A          166 SSYQPQQQLQCLAMLIQCSLA  186 (373)
T ss_dssp             TTSCGGGGHHHHHHHHHHHHH
T ss_pred             hccCcHHHHHHHHHHHHHHHH
Confidence            65     34567777776653

>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A

Probab=97.29  E-value=0.0014  Score=50.13  Aligned_cols=46  Identities=11%  Similarity=0.024  Sum_probs=40.7

Q ss_pred             HHHHHHhHHHHHHHHcCCHHHHHHHHHHHHHcCCCchHHHHHHHHH
Q 021445          262 TKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQV  307 (312)
Q Consensus       262 ~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~l~p~~~Ka~~rrg~a  307 (312)
                      ....++..+|..++|+|+|.+|++.|+.+|+++|.|..|.--+..+
T Consensus        72 ~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~~eP~n~QA~~Lk~~i  117 (126)
T 1nzn_A           72 EQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAKELERLI  117 (126)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence            4567899999999999999999999999999999999887666544

>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A

Probab=97.26  E-value=0.0013  Score=50.56  Aligned_cols=45  Identities=13%  Similarity=0.046  Sum_probs=40.1

Q ss_pred             HHHHHhHHHHHHHHcCCHHHHHHHHHHHHHcCCCchHHHHHHHHH
Q 021445          263 KSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQV  307 (312)
Q Consensus       263 ~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~l~p~~~Ka~~rrg~a  307 (312)
                      ...++.-+|.+++|+|+|.+|+++|+.+|+++|.|..|.--+..+
T Consensus        77 ~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA~~Lk~~I  121 (134)
T 3o48_A           77 RRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGALKSMV  121 (134)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Confidence            566888999999999999999999999999999999887666544

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2

Probab=97.13  E-value=0.0016  Score=58.39  Aligned_cols=87  Identities=13%  Similarity=-0.045  Sum_probs=67.9

Q ss_pred             hhhhHhhhhhHHhhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHcCCHHHHHHHHHHHH
Q 021445          212 VDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAM  291 (312)
Q Consensus       212 ~~~~k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al  291 (312)
                      +..+...|..++..|+|++|...|.+++.......            .......++.|+|.++..+|+|++|+..+.+++
T Consensus        53 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~------------~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al  120 (373)
T 1hz4_A           53 IVATSVLGEVLHCKGELTRSLALMQQTEQMARQHD------------VWHYALWSLIQQSEILFAQGFLQTAWETQEKAF  120 (373)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTT------------CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcC------------cHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence            44567788999999999999999999998643310            112345678999999999999999999999999


Q ss_pred             HcC--------CCchHHHHHHHHHhhh
Q 021445          292 RDG--------DDNVKALFRQGQVSII  310 (312)
Q Consensus       292 ~l~--------p~~~Ka~~rrg~a~~~  310 (312)
                      .+.        |....++...|.++..
T Consensus       121 ~~~~~~~~~~~~~~~~~~~~la~~~~~  147 (373)
T 1hz4_A          121 QLINEQHLEQLPMHEFLVRIRAQLLWA  147 (373)
T ss_dssp             HHHHHTTCTTSTHHHHHHHHHHHHHHH
T ss_pred             HHHHHhccccCcHHHHHHHHHHHHHHH
Confidence            875        3456677778877754

>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}

Probab=97.13  E-value=0.001  Score=58.43  Aligned_cols=75  Identities=12%  Similarity=-0.025  Sum_probs=61.7

Q ss_pred             hhhhHhhhhhHHhhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHH-HHHHHhHHHHHHHHcCCHHHHHHHHHHH
Q 021445          212 VDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKT-KSQIFTNSSACKLKLGDLKGALLDTEFA  290 (312)
Q Consensus       212 ~~~~k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~N~a~~~~kl~~~~~Ai~~~~~a  290 (312)
                      .......|..+-..|++++|+..|++++.--                ..|. ...++.++|.|+.++|+.++|...++++
T Consensus       171 ~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~----------------~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a  234 (282)
T 4f3v_A          171 GAAGVAHGVAAANLALFTEAERRLTEANDSP----------------AGEACARAIAWYLAMARRSQGNESAAVALLEWL  234 (282)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHTST----------------TTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHhcCC----------------CCccccHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            3456778999999999999999999998610                1022 4568899999999999999999999999


Q ss_pred             HHcCCCchHHHHH
Q 021445          291 MRDGDDNVKALFR  303 (312)
Q Consensus       291 l~l~p~~~Ka~~r  303 (312)
                      +..+|. .+++--
T Consensus       235 ~a~~P~-~~~~~a  246 (282)
T 4f3v_A          235 QTTHPE-PKVAAA  246 (282)
T ss_dssp             HHHSCC-HHHHHH
T ss_pred             HhcCCc-HHHHHH
Confidence            999998 665543

>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=97.08  E-value=0.0014  Score=59.95  Aligned_cols=90  Identities=9%  Similarity=-0.090  Sum_probs=64.8

Q ss_pred             hhhhhHhhhhhHHhhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHcCCHHHHHHHHHHH
Q 021445          211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA  290 (312)
Q Consensus       211 ~~~~~k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~a  290 (312)
                      ......++|..++++|+|++|++.|.++++........... ........+....++.+++.+|.++|+|++|++...++
T Consensus         3 ~p~~~l~~a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~-~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~   81 (434)
T 4b4t_Q            3 LPGSKLEEARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAG-ASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHS   81 (434)
T ss_dssp             STTHHHHHHHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSS-SSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred             ChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccchhHHH-HHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence            34456788999999999999999999999843221111000 00111234455678899999999999999999999999


Q ss_pred             HHcCCCchHHH
Q 021445          291 MRDGDDNVKAL  301 (312)
Q Consensus       291 l~l~p~~~Ka~  301 (312)
                      +.+.+...++.
T Consensus        82 ~~~~~~~~~~~   92 (434)
T 4b4t_Q           82 TEYMMQFAKSK   92 (434)
T ss_dssp             HHHHHTSCHHH
T ss_pred             HHHHHHccchH
Confidence            98876665553

>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=97.05  E-value=0.0024  Score=49.76  Aligned_cols=45  Identities=13%  Similarity=0.046  Sum_probs=39.3

Q ss_pred             HHHHHhHHHHHHHHcCCHHHHHHHHHHHHHcCCCchHHHHHHHHH
Q 021445          263 KSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQV  307 (312)
Q Consensus       263 ~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~l~p~~~Ka~~rrg~a  307 (312)
                      ...++..+|..++|+++|.+|.++|+.+|+++|.|..|.--+..+
T Consensus        76 ~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA~~Lk~~I  120 (144)
T 1y8m_A           76 RRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGALKSMV  120 (144)
T ss_dssp             HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Confidence            455888999999999999999999999999999998877665443

>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1

Probab=97.01  E-value=0.0023  Score=49.51  Aligned_cols=71  Identities=10%  Similarity=-0.071  Sum_probs=58.5

Q ss_pred             hhhhHHhhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHH----cCCHHHHHHHHHHHHHc
Q 021445          218 FGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLK----LGDLKGALLDTEFAMRD  293 (312)
Q Consensus       218 ~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~k----l~~~~~Ai~~~~~al~l  293 (312)
                      .|..+...+.+++|+..|++|.+.                    ....++.|++.+|..    .+++++|++.+.+|.+.
T Consensus        31 lg~~y~~g~~~~~A~~~~~~Aa~~--------------------g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~   90 (138)
T 1klx_A           31 LSLVSNSQINKQKLFQYLSKACEL--------------------NSGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGL   90 (138)
T ss_dssp             HHHHTCTTSCHHHHHHHHHHHHHT--------------------TCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT
T ss_pred             HHHHHHcCCCHHHHHHHHHHHHcC--------------------CCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHcC
Confidence            566666667788899999999882                    235688899999999    88999999999999987


Q ss_pred             CCCchHHHHHHHHHhhh
Q 021445          294 GDDNVKALFRQGQVSII  310 (312)
Q Consensus       294 ~p~~~Ka~~rrg~a~~~  310 (312)
                        .++.|++..|.+|..
T Consensus        91 --g~~~a~~~Lg~~y~~  105 (138)
T 1klx_A           91 --NDQDGCLILGYKQYA  105 (138)
T ss_dssp             --TCHHHHHHHHHHHHH
T ss_pred             --CCHHHHHHHHHHHHC
Confidence              688999999988864

>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}

Probab=96.97  E-value=0.0024  Score=51.11  Aligned_cols=95  Identities=13%  Similarity=0.106  Sum_probs=61.4

Q ss_pred             hhhhhHhhhhhHHhhhcHHHHHHHHHHHHHHhhhccccCC---------CCchhhhHHHHHHHHHHhHHHHHHHHcCCHH
Q 021445          211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEG---------IDEGKSSSLRKTKSQIFTNSSACKLKLGDLK  281 (312)
Q Consensus       211 ~~~~~k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~~~~---------~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~  281 (312)
                      .++.+.-.|+.+|.+++|..|...|++||...+.......         ..+.. ..+ .....+...+|.||+++++++
T Consensus        62 ~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~~~~~~~~ss~p~s-~~~-~~e~Elkykia~C~~~l~~~~  139 (167)
T 3ffl_A           62 KYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKVRPSTGNSASTPQS-QCL-PSEIEVKYKLAECYTVLKQDK  139 (167)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC---------------------CC-CCHHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCccccccccCCCccc-ccc-cchHHHHHHHHHHHHHHCCHH
Confidence            5677888999999999999999999999987665321110         00000 000 113356778999999999999


Q ss_pred             HHHHHHHHHHHcCCCchHHHHHHHHHh
Q 021445          282 GALLDTEFAMRDGDDNVKALFRQGQVS  308 (312)
Q Consensus       282 ~Ai~~~~~al~l~p~~~Ka~~rrg~a~  308 (312)
                      +||...+.+-. ....+|.-.-.|+-|
T Consensus       140 ~Ai~~Le~Ip~-k~Rt~kvnm~LakLy  165 (167)
T 3ffl_A          140 DAIAILDGIPS-RQRTPKINMLLANLY  165 (167)
T ss_dssp             HHHHHHHTSCG-GGCCHHHHHHHHHHC
T ss_pred             HHHHHHhcCCc-hhcCHHHHHHHHHHh
Confidence            99997654321 124555555555443

>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1

Probab=96.64  E-value=0.0057  Score=47.21  Aligned_cols=72  Identities=19%  Similarity=0.075  Sum_probs=58.2

Q ss_pred             hhhhHhhhhhHHh----hhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHH----cCCHHHH
Q 021445          212 VDSIKVFGNEHYK----KQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLK----LGDLKGA  283 (312)
Q Consensus       212 ~~~~k~~Gn~~~~----~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~k----l~~~~~A  283 (312)
                      +..+...|..++.    .+++++|+..|++|.+.                    ....++.|++.+|..    .+++++|
T Consensus        57 ~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~--------------------g~~~a~~~Lg~~y~~G~g~~~d~~~A  116 (138)
T 1klx_A           57 GNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGL--------------------NDQDGCLILGYKQYAGKGVVKNEKQA  116 (138)
T ss_dssp             HHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT--------------------TCHHHHHHHHHHHHHTSSSCCCHHHH
T ss_pred             HHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHcC--------------------CCHHHHHHHHHHHHCCCCCCcCHHHH
Confidence            4456677777777    89999999999999982                    235588999999999    9999999


Q ss_pred             HHHHHHHHHcCCCchHHHHHHH
Q 021445          284 LLDTEFAMRDGDDNVKALFRQG  305 (312)
Q Consensus       284 i~~~~~al~l~p~~~Ka~~rrg  305 (312)
                      +..+.+|.+..  +..|.+..+
T Consensus       117 ~~~~~~Aa~~g--~~~A~~~l~  136 (138)
T 1klx_A          117 VKTFEKACRLG--SEDACGILN  136 (138)
T ss_dssp             HHHHHHHHHTT--CHHHHHHC-
T ss_pred             HHHHHHHHHCC--CHHHHHHHh
Confidence            99999999984  566665543

>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=96.45  E-value=0.0041  Score=56.74  Aligned_cols=71  Identities=18%  Similarity=0.102  Sum_probs=58.9

Q ss_pred             hhhhHhhhhhHHhhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHcCCHHHHHHHHHHHH
Q 021445          212 VDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAM  291 (312)
Q Consensus       212 ~~~~k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al  291 (312)
                      +......|+.++..|+|.+|+..+.+++..+....            -.+....++.+++.+|+.+++|.+|...+++++
T Consensus       135 ~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al  202 (434)
T 4b4t_Q          135 HSLSIKLATLHYQKKQYKDSLALINDLLREFKKLD------------DKPSLVDVHLLESKVYHKLRNLAKSKASLTAAR  202 (434)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSS------------CSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcc------------cchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHH
Confidence            44567789999999999999999999998654310            124457799999999999999999999999999


Q ss_pred             HcC
Q 021445          292 RDG  294 (312)
Q Consensus       292 ~l~  294 (312)
                      .+.
T Consensus       203 ~~~  205 (434)
T 4b4t_Q          203 TAA  205 (434)
T ss_dssp             HHH
T ss_pred             HHh
Confidence            764

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7

Probab=96.41  E-value=0.0046  Score=58.63  Aligned_cols=81  Identities=11%  Similarity=-0.043  Sum_probs=63.1

Q ss_pred             hhhhHhhhhhHHh-------hhcHH-------HHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHc
Q 021445          212 VDSIKVFGNEHYK-------KQDYK-------MALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKL  277 (312)
Q Consensus       212 ~~~~k~~Gn~~~~-------~~~y~-------~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl  277 (312)
                      ...+...|..+.+       .|+++       +|+..|.+|++.+                 .|....++.+++..+.++
T Consensus       272 ~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~-----------------~p~~~~l~~~~~~~~~~~  334 (530)
T 2ooe_A          272 PDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTL-----------------LKKNMLLYFAYADYEESR  334 (530)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTT-----------------CSSCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHh-----------------CcccHHHHHHHHHHHHhc
Confidence            3445667776665       68876       8999999999721                 233466889999999999


Q ss_pred             CCHHHHHHHHHHHHHcCCCch-HHHHHHHHHhh
Q 021445          278 GDLKGALLDTEFAMRDGDDNV-KALFRQGQVSI  309 (312)
Q Consensus       278 ~~~~~Ai~~~~~al~l~p~~~-Ka~~rrg~a~~  309 (312)
                      |++++|...++++|+++|.++ .+|...|.++.
T Consensus       335 g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~  367 (530)
T 2ooe_A          335 MKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFAR  367 (530)
T ss_dssp             TCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHhCccccCchHHHHHHHHHHH
Confidence            999999999999999999885 68888777654

>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}

Probab=96.38  E-value=0.0044  Score=57.87  Aligned_cols=93  Identities=13%  Similarity=0.055  Sum_probs=55.3

Q ss_pred             hhHhhhhhHHhhh---cHHHHHHHHHHHHHHhhhcc-------------ccCCCCchhhh-----HHHHHHHHHHhHHHH
Q 021445          214 SIKVFGNEHYKKQ---DYKMALRKYRKALRYLDICW-------------EKEGIDEGKSS-----SLRKTKSQIFTNSSA  272 (312)
Q Consensus       214 ~~k~~Gn~~~~~~---~y~~A~~~Y~kal~~l~~~~-------------~~~~~~~~~~~-----~~~~~~~~~~~N~a~  272 (312)
                      .+...|..+.+.|   ++++|+..|++|++.=....             .....+.++..     .. +....++.|++.
T Consensus       178 a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa-~g~~~a~~~Lg~  256 (452)
T 3e4b_A          178 CYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA-PGYPASWVSLAQ  256 (452)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG-GGSTHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc-CCCHHHHHHHHH
Confidence            4567777888888   99999999999987311000             00001111110     01 344556667777


Q ss_pred             HH---HHcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHhh
Q 021445          273 CK---LKLGDLKGALLDTEFAMRDGDDNVKALFRQGQVSI  309 (312)
Q Consensus       273 ~~---~kl~~~~~Ai~~~~~al~l~p~~~Ka~~rrg~a~~  309 (312)
                      +|   ...+++++|+..+.++++.  .++.|++..|.+|.
T Consensus       257 ~~~~~~~~~d~~~A~~~~~~Aa~~--g~~~A~~~Lg~~y~  294 (452)
T 3e4b_A          257 LLYDFPELGDVEQMMKYLDNGRAA--DQPRAELLLGKLYY  294 (452)
T ss_dssp             HHHHSGGGCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHH
T ss_pred             HHHhCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHH
Confidence            63   3566777777777777654  36777777776665

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7

Probab=96.36  E-value=0.0046  Score=58.60  Aligned_cols=35  Identities=11%  Similarity=-0.093  Sum_probs=23.8

Q ss_pred             HHcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHhh
Q 021445          275 LKLGDLKGALLDTEFAMRDGDDNVKALFRQGQVSI  309 (312)
Q Consensus       275 ~kl~~~~~Ai~~~~~al~l~p~~~Ka~~rrg~a~~  309 (312)
                      ..+|++++|+..++++|+.+|+++.+|...+..+.
T Consensus       402 ~~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~  436 (530)
T 2ooe_A          402 YCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLS  436 (530)
T ss_dssp             HHTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred             HHcCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Confidence            35677777777777777777777777766665544

>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3

Probab=96.35  E-value=0.012  Score=54.83  Aligned_cols=99  Identities=11%  Similarity=0.031  Sum_probs=67.4

Q ss_pred             hhhhhhhHhhhhhHHhhhcHHHHHHHHHHHHHHh------hhccccCCCCchhh----hHHHHHHHHHHhHHHHHHHHcC
Q 021445          209 MNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYL------DICWEKEGIDEGKS----SSLRKTKSQIFTNSSACKLKLG  278 (312)
Q Consensus       209 ~~~~~~~k~~Gn~~~~~~~y~~A~~~Y~kal~~l------~~~~~~~~~~~~~~----~~~~~~~~~~~~N~a~~~~kl~  278 (312)
                      ...+..+...|+.+++.|+|++|++.|.+|...-      ..|...........    ....|.   -+..++.+|.+.|
T Consensus       145 Y~~a~n~~~LA~~L~~Lg~yq~AVea~~KA~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~~~ad---~l~~lv~~Yek~G  221 (449)
T 1b89_A          145 YNNVSNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVHAD---ELEELINYYQDRG  221 (449)
T ss_dssp             HHHTTCHHHHHHHHHTTTCHHHHHHHHHHHTCHHHHHHHHHHHHHTTCHHHHHHTTTTTTTCHH---HHHHHHHHHHHTT
T ss_pred             HHHhhhHHHHHHHHHHhccHHHHHHHHHHcCCchhHHHHHHHHHHcCcHHHHHHHHHHHHhCHh---hHHHHHHHHHHCC
Confidence            3455667788999999999999999999995320      00000000000000    000111   1224678899999


Q ss_pred             CHHHHHHHHHHHHHcCCCchHHHHHHHHHhhh
Q 021445          279 DLKGALLDTEFAMRDGDDNVKALFRQGQVSII  310 (312)
Q Consensus       279 ~~~~Ai~~~~~al~l~p~~~Ka~~rrg~a~~~  310 (312)
                      +|++|+..++++|.+++.+.-++...|.+|.+
T Consensus       222 ~~eEai~lLe~aL~le~ah~~~ftel~il~~k  253 (449)
T 1b89_A          222 YFEELITMLEAALGLERAHMGMFTELAILYSK  253 (449)
T ss_dssp             CHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHT
T ss_pred             CHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHh
Confidence            99999999999999999999999999988754

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}

Probab=96.34  E-value=0.0047  Score=57.92  Aligned_cols=29  Identities=21%  Similarity=0.283  Sum_probs=17.9

Q ss_pred             hhhhHhhhhhHHhh---hcHHHHHHHHHHHHH
Q 021445          212 VDSIKVFGNEHYKK---QDYKMALRKYRKALR  240 (312)
Q Consensus       212 ~~~~k~~Gn~~~~~---~~y~~A~~~Y~kal~  240 (312)
                      ...+...|..++..   +++++|+..|++|++
T Consensus       328 ~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~  359 (490)
T 2xm6_A          328 ATAQANLGAIYFRLGSEEEHKKAVEWFRKAAA  359 (490)
T ss_dssp             HHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCCcccHHHHHHHHHHHHH
Confidence            34455566666553   367777777777766

>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3

Probab=96.28  E-value=0.0039  Score=58.10  Aligned_cols=65  Identities=17%  Similarity=0.266  Sum_probs=42.6

Q ss_pred             hhHhhhhhHHhhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHcCCHHHHHHHHHHHHHc
Q 021445          214 SIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRD  293 (312)
Q Consensus       214 ~~k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~l  293 (312)
                      .+...|+.++..|+|++|+..|+++                          .-|.++|.|+.++|+|++|++.+.+|   
T Consensus       124 a~~~IGd~~~~~g~yeeA~~~Y~~a--------------------------~n~~~LA~~L~~Lg~yq~AVea~~KA---  174 (449)
T 1b89_A          124 HIQQVGDRCYDEKMYDAAKLLYNNV--------------------------SNFGRLASTLVHLGEYQAAVDGARKA---  174 (449)
T ss_dssp             -------------CTTTHHHHHHHT--------------------------TCHHHHHHHHHTTTCHHHHHHHHHHH---
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHh--------------------------hhHHHHHHHHHHhccHHHHHHHHHHc---
Confidence            7899999999999999999999976                          15788999999999999999999999   


Q ss_pred             CCCchHHHHHHHHHhh
Q 021445          294 GDDNVKALFRQGQVSI  309 (312)
Q Consensus       294 ~p~~~Ka~~rrg~a~~  309 (312)
                        .++++|.....|+.
T Consensus       175 --~~~~~Wk~v~~aCv  188 (449)
T 1b89_A          175 --NSTRTWKEVCFACV  188 (449)
T ss_dssp             --TCHHHHHHHHHHHH
T ss_pred             --CCchhHHHHHHHHH
Confidence              36666655544443

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}

Probab=96.13  E-value=0.018  Score=53.90  Aligned_cols=29  Identities=17%  Similarity=0.331  Sum_probs=22.2

Q ss_pred             hhhhHhhhhhHHh----hhcHHHHHHHHHHHHH
Q 021445          212 VDSIKVFGNEHYK----KQDYKMALRKYRKALR  240 (312)
Q Consensus       212 ~~~~k~~Gn~~~~----~~~y~~A~~~Y~kal~  240 (312)
                      +..+...|..++.    .+++++|+..|++|++
T Consensus        39 ~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~   71 (490)
T 2xm6_A           39 AKAQLELGYRYFQGNETTKDLTQAMDWFRRAAE   71 (490)
T ss_dssp             HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHH
Confidence            4456667777777    7888888888888876

>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}

Probab=96.13  E-value=0.011  Score=54.99  Aligned_cols=72  Identities=17%  Similarity=0.030  Sum_probs=48.0

Q ss_pred             hhHhhhhh-H--HhhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHcC-----CHHHHHH
Q 021445          214 SIKVFGNE-H--YKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLG-----DLKGALL  285 (312)
Q Consensus       214 ~~k~~Gn~-~--~~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~-----~~~~Ai~  285 (312)
                      .+...|.. +  ...+++++|+..|++|++.                    ....++.|+|.+|. .|     ++++|+.
T Consensus       250 a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~--------------------g~~~A~~~Lg~~y~-~G~g~~~d~~~A~~  308 (452)
T 3e4b_A          250 SWVSLAQLLYDFPELGDVEQMMKYLDNGRAA--------------------DQPRAELLLGKLYY-EGKWVPADAKAAEA  308 (452)
T ss_dssp             HHHHHHHHHHHSGGGCCHHHHHHHHHHHHHT--------------------TCHHHHHHHHHHHH-HCSSSCCCHHHHHH
T ss_pred             HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHC--------------------CCHHHHHHHHHHHH-cCCCCCCCHHHHHH
Confidence            34455555 2  3577888888888888762                    13446667777776 33     7777777


Q ss_pred             HHHHHHHcCCCchHHHHHHHHHhh
Q 021445          286 DTEFAMRDGDDNVKALFRQGQVSI  309 (312)
Q Consensus       286 ~~~~al~l~p~~~Ka~~rrg~a~~  309 (312)
                      .+.+|.   +.++.|++..|.+|.
T Consensus       309 ~~~~Aa---~g~~~A~~~Lg~~y~  329 (452)
T 3e4b_A          309 HFEKAV---GREVAADYYLGQIYR  329 (452)
T ss_dssp             HHHTTT---TTCHHHHHHHHHHHH
T ss_pred             HHHHHh---CCCHHHHHHHHHHHH
Confidence            777777   667777777776664

>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*

Probab=96.05  E-value=0.051  Score=49.72  Aligned_cols=100  Identities=13%  Similarity=0.005  Sum_probs=79.3

Q ss_pred             hhhhhHhhhhhHHhhhcHHHHHHHHHHHHHHhhhccccCC----CCchhhhHHHHHHHHHHhHHHHHHHHcCCHHHHHHH
Q 021445          211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEG----IDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLD  286 (312)
Q Consensus       211 ~~~~~k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~~~~----~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~  286 (312)
                      ..+.+..+|......++.+.|+..+.+|+.+.........    .-..+...+......+...++.+++.+|++.+|+..
T Consensus       114 ~f~~l~~~~~~~~~~~~~~~a~~~l~~Al~L~rG~~L~~~~~~~w~~~~r~~l~~~~~~a~~~~~~~~l~~g~~~~a~~~  193 (388)
T 2ff4_A          114 RFVAEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIAE  193 (388)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHH
Confidence            3455667777777889999999999999998755332211    112334567788888999999999999999999999


Q ss_pred             HHHHHHcCCCchHHHHHHHHHhhh
Q 021445          287 TEFAMRDGDDNVKALFRQGQVSII  310 (312)
Q Consensus       287 ~~~al~l~p~~~Ka~~rrg~a~~~  310 (312)
                      +.+++..+|-+..+|...-.||+.
T Consensus       194 l~~~~~~~P~~E~~~~~lm~al~~  217 (388)
T 2ff4_A          194 LEALTFEHPYREPLWTQLITAYYL  217 (388)
T ss_dssp             HHHHHHHSTTCHHHHHHHHHHHHT
T ss_pred             HHHHHHhCCCCHHHHHHHHHHHHH
Confidence            999999999999988888888764

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=95.82  E-value=0.014  Score=61.41  Aligned_cols=61  Identities=13%  Similarity=0.106  Sum_probs=41.1

Q ss_pred             hhhhHhhhhhHHhhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHcCCHHHHHHHHHHHH
Q 021445          212 VDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAM  291 (312)
Q Consensus       212 ~~~~k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al  291 (312)
                      ...|.+.|..+.+.|+|++|+..|.+|=                       ....|.+.+.|+.++|+|++|++.+..|+
T Consensus      1105 p~vWsqLAKAql~~G~~kEAIdsYiKAd-----------------------D~say~eVa~~~~~lGkyEEAIeyL~mAr 1161 (1630)
T 1xi4_A         1105 PAVWSQLAKAQLQKGMVKEAIDSYIKAD-----------------------DPSSYMEVVQAANTSGNWEELVKYLQMAR 1161 (1630)
T ss_pred             HHHHHHHHHHHHhCCCHHHHHHHHHhcC-----------------------ChHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            3445666777777777777777776651                       24466677777777777777777777777


Q ss_pred             HcCC
Q 021445          292 RDGD  295 (312)
Q Consensus       292 ~l~p  295 (312)
                      +.++
T Consensus      1162 k~~~ 1165 (1630)
T 1xi4_A         1162 KKAR 1165 (1630)
T ss_pred             hhcc
Confidence            6653

>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}

Probab=95.66  E-value=0.014  Score=41.91  Aligned_cols=48  Identities=17%  Similarity=-0.010  Sum_probs=42.3

Q ss_pred             HHHHhHHHHHHHHcCC---HHHHHHHHHHHHHcCCCchHHHHHHHHHhhhh
Q 021445          264 SQIFTNSSACKLKLGD---LKGALLDTEFAMRDGDDNVKALFRQGQVSIIL  311 (312)
Q Consensus       264 ~~~~~N~a~~~~kl~~---~~~Ai~~~~~al~l~p~~~Ka~~rrg~a~~~L  311 (312)
                      ..++..+|.+++..++   ..+|.....+||++||++++|++-.|.+++..
T Consensus         6 ~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~   56 (93)
T 3bee_A            6 ATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFIS   56 (93)
T ss_dssp             HHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHc
Confidence            4578889999987666   79999999999999999999999999988753

>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1

Probab=95.66  E-value=0.0069  Score=47.89  Aligned_cols=69  Identities=12%  Similarity=0.126  Sum_probs=55.9

Q ss_pred             hhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHcC---CHHHHHHHHHHHHHcC-C-CchH
Q 021445          225 KQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLG---DLKGALLDTEFAMRDG-D-DNVK  299 (312)
Q Consensus       225 ~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~---~~~~Ai~~~~~al~l~-p-~~~K  299 (312)
                      ......+.+.|.+++.                  ..+....+..|.|.|+.+.+   +.++++..++.+++.+ | .+..
T Consensus        11 ~~~l~~~~~~y~~e~~------------------~~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd   72 (152)
T 1pc2_A           11 VEDLLKFEKKFQSEKA------------------AGSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRD   72 (152)
T ss_dssp             HHHHHHHHHHHHHHHH------------------TTCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHH
T ss_pred             HHHHHHHHHHHHHHHc------------------cCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHH
Confidence            3456677777887776                  12234568889999999998   6779999999999999 7 6799


Q ss_pred             HHHHHHHHhhhh
Q 021445          300 ALFRQGQVSIIL  311 (312)
Q Consensus       300 a~~rrg~a~~~L  311 (312)
                      ++|..|.+|+.+
T Consensus        73 ~lY~LAv~~~kl   84 (152)
T 1pc2_A           73 YVFYLAVGNYRL   84 (152)
T ss_dssp             HHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHc
Confidence            999999999876

>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}

Probab=95.65  E-value=0.036  Score=44.21  Aligned_cols=89  Identities=8%  Similarity=-0.000  Sum_probs=68.4

Q ss_pred             hhHhhhhhHHhhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHcCCHHHHHHHHHHHHHc
Q 021445          214 SIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRD  293 (312)
Q Consensus       214 ~~k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~l  293 (312)
                      .+.+....++..+.|+.|+-.+..++.+.+..+  +..       -......++..+|.+++..++|..|+..+.+||++
T Consensus        22 ~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~--~~~-------sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~   92 (167)
T 3ffl_A           22 NVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNP--ELF-------SPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQ   92 (167)
T ss_dssp             CHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHST--TSS-------CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCc--ccc-------cHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHH
Confidence            478899999999999999999999998653310  000       12345678899999999999999999999999844


Q ss_pred             CC---C----------------------chHHHHHHHHHhhhh
Q 021445          294 GD---D----------------------NVKALFRQGQVSIIL  311 (312)
Q Consensus       294 ~p---~----------------------~~Ka~~rrg~a~~~L  311 (312)
                      ..   .                      .+...|+-|.||.+|
T Consensus        93 ~k~l~k~~s~~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l  135 (167)
T 3ffl_A           93 KKALSKTSKVRPSTGNSASTPQSQCLPSEIEVKYKLAECYTVL  135 (167)
T ss_dssp             HHCC--------------------CCCCHHHHHHHHHHHHHHT
T ss_pred             HHHHhcCCCccccccccCCCcccccccchHHHHHHHHHHHHHH
Confidence            21   1                      125778999999876

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A

Probab=95.62  E-value=0.021  Score=51.76  Aligned_cols=62  Identities=8%  Similarity=-0.137  Sum_probs=52.3

Q ss_pred             hhhhHHhhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHcCCHHHHHHHHHHHHHcCCCc
Q 021445          218 FGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDN  297 (312)
Q Consensus       218 ~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~l~p~~  297 (312)
                      .+..++.+|++++|+..+++|+.                  +++. ...|.-+|.++.-.|++++|++.+.+|+.++|..
T Consensus       283 lal~~l~~gd~d~A~~~l~rAl~------------------Ln~s-~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~  343 (372)
T 3ly7_A          283 KAVSALVKGKTDESYQAINTGID------------------LEMS-WLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGA  343 (372)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHHHH------------------HCCC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSH
T ss_pred             HHHHHHhCCCHHHHHHHHHHHHh------------------cCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCc
Confidence            44556678999999999999999                  3332 4567788999999999999999999999999977


Q ss_pred             h
Q 021445          298 V  298 (312)
Q Consensus       298 ~  298 (312)
                      .
T Consensus       344 ~  344 (372)
T 3ly7_A          344 N  344 (372)
T ss_dssp             H
T ss_pred             C
Confidence            5

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=95.52  E-value=0.031  Score=58.93  Aligned_cols=45  Identities=7%  Similarity=-0.097  Sum_probs=39.1

Q ss_pred             HHhHHHHHHHHcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHhhh
Q 021445          266 IFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQVSII  310 (312)
Q Consensus       266 ~~~N~a~~~~kl~~~~~Ai~~~~~al~l~p~~~Ka~~rrg~a~~~  310 (312)
                      .+..++..|.++|.|++||..|+++|.+++.+.-.+...|.+|.+
T Consensus      1282 eLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmftELaiLyaK 1326 (1630)
T 1xi4_A         1282 ELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSK 1326 (1630)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHHHHHHHHHh
Confidence            455788899999999999999999999999998888788877653

>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B

Probab=95.43  E-value=0.03  Score=49.63  Aligned_cols=77  Identities=6%  Similarity=0.032  Sum_probs=59.8

Q ss_pred             hHhhhhhHHhhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 021445          215 IKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDG  294 (312)
Q Consensus       215 ~k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~l~  294 (312)
                      +.-.|..++..|++++|++.+.++|..-       + +        +....++.-++.+++++|+.+.|.+.+.+..+.+
T Consensus       103 ~~~la~i~~~~g~~eeAL~~l~~~i~~~-------~-~--------~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~~  166 (310)
T 3mv2_B          103 LYLLATAQAILGDLDKSLETCVEGIDND-------E-A--------EGTTELLLLAIEVALLNNNVSTASTIFDNYTNAI  166 (310)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHTSS-------C-S--------TTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHhccC-------C-C--------cCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence            4577888999999999999999998720       0 0        1355678889999999999999999999999999


Q ss_pred             CC----chHHHHHHHHH
Q 021445          295 DD----NVKALFRQGQV  307 (312)
Q Consensus       295 p~----~~Ka~~rrg~a  307 (312)
                      |+    +-..+...+.+
T Consensus       167 ~d~~~~~d~~l~~Laea  183 (310)
T 3mv2_B          167 EDTVSGDNEMILNLAES  183 (310)
T ss_dssp             CHHHHHHHHHHHHHHHH
T ss_pred             ccccccchHHHHHHHHH
Confidence            83    23344555544

>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B

Probab=95.17  E-value=0.027  Score=49.97  Aligned_cols=65  Identities=12%  Similarity=0.009  Sum_probs=49.0

Q ss_pred             cHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHcCCHHHHHHHHHHHHHc----------CCC
Q 021445          227 DYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRD----------GDD  296 (312)
Q Consensus       227 ~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~l----------~p~  296 (312)
                      ++++|...|+++.+....                .....+++|   |++++|+|++|....+.++++          +|+
T Consensus       193 ~~q~A~~~f~El~~~~p~----------------~~~~~lLln---~~~~~g~~~eAe~~L~~l~~~~p~~~~k~~~~p~  253 (310)
T 3mv2_B          193 TATSNFYYYEELSQTFPT----------------WKTQLGLLN---LHLQQRNIAEAQGIVELLLSDYYSVEQKENAVLY  253 (310)
T ss_dssp             TTTHHHHHHHHHHTTSCS----------------HHHHHHHHH---HHHHHTCHHHHHHHHHHHHSHHHHTTTCHHHHSS
T ss_pred             cHHHHHHHHHHHHHhCCC----------------cccHHHHHH---HHHHcCCHHHHHHHHHHHHHhcccccccccCCCC
Confidence            888888888887662100                012345666   999999999999999988877          588


Q ss_pred             chHHHHHHHHHhhh
Q 021445          297 NVKALFRQGQVSII  310 (312)
Q Consensus       297 ~~Ka~~rrg~a~~~  310 (312)
                      ++.++...+.+.+.
T Consensus       254 ~~~~LaN~i~l~~~  267 (310)
T 3mv2_B          254 KPTFLANQITLALM  267 (310)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHH
Confidence            99999888766554

>2w2u_A Hypothetical P60 katanin; hydrolase transport complex, nucleotide-binding, ESCRT, AAA-ATPase, cytokinesis, ATP-binding; 2.20A {Sulfolobus acidocaldarius}

Probab=94.89  E-value=0.094  Score=36.80  Aligned_cols=65  Identities=11%  Similarity=0.082  Sum_probs=44.5

Q ss_pred             hhhhhhhhhHhhhhhHHhhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHH
Q 021445          207 WWMNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSAC  273 (312)
Q Consensus       207 ~~~~~~~~~k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~  273 (312)
                      ..++.|..+..+|..+=+.|+|++|+.+|.+||++|......+ +++.. ...-.....=|.+||.-
T Consensus        14 ~~~~~Ai~lv~~Ave~D~~g~y~eAl~lY~~aie~l~~alk~e-~d~~~-k~~ir~K~~eY~~RAE~   78 (83)
T 2w2u_A           14 MLEEMARKYAINAVKADKEGNAEEAITNYKKAIEVLAQLVSLY-RDGST-AAIYEQMINEYKRRIEV   78 (83)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHS-TTSST-HHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHC-CCHHH-HHHHHHHHHHHHHHHHH
Confidence            3566788889999999999999999999999999886643222 22222 22223344456666654

>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*

Probab=94.69  E-value=0.099  Score=45.78  Aligned_cols=69  Identities=12%  Similarity=0.058  Sum_probs=57.1

Q ss_pred             hhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHH--HHHHHhHHHHHHHHc-----CCHHHHHHHHHHHHHcCCC
Q 021445          224 KKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKT--KSQIFTNSSACKLKL-----GDLKGALLDTEFAMRDGDD  296 (312)
Q Consensus       224 ~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~--~~~~~~N~a~~~~kl-----~~~~~Ai~~~~~al~l~p~  296 (312)
                      ..+....|....++||+                  ++|.  .-.+|.-++..|.++     |+.++|.+++++||+++|+
T Consensus       175 Al~~l~~A~a~lerAle------------------LDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~  236 (301)
T 3u64_A          175 LPDTVHAAVMMLERACD------------------LWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSA  236 (301)
T ss_dssp             CHHHHHHHHHHHHHHHH------------------HCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCT
T ss_pred             HHHhHHHHHHHHHHHHH------------------hCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCC
Confidence            33456778888888888                  5665  455999999999996     9999999999999999997


Q ss_pred             c-hHHHHHHHHHhhh
Q 021445          297 N-VKALFRQGQVSII  310 (312)
Q Consensus       297 ~-~Ka~~rrg~a~~~  310 (312)
                      . ..+++..|..+..
T Consensus       237 ~~id~~v~YA~~l~~  251 (301)
T 3u64_A          237 HDPDHHITYADALCI  251 (301)
T ss_dssp             TCSHHHHHHHHHTTT
T ss_pred             CCchHHHHHHHHHHH
Confidence            5 9999888887654

>2v6y_A AAA family ATPase, P60 katanin; MIT, VPS4, archaea, AAA-ATPase, ATP-binding, microtubule INT and trafficking domain, nucleotide-binding; HET: SRT; 2.40A {Sulfolobus solfataricus} PDB: 2v6y_B*

Probab=94.61  E-value=0.11  Score=36.35  Aligned_cols=65  Identities=9%  Similarity=0.039  Sum_probs=44.1

Q ss_pred             hhhhhhhhHhhhhhHHhhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHH
Q 021445          208 WMNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACK  274 (312)
Q Consensus       208 ~~~~~~~~k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~  274 (312)
                      .++.|..+..+|...=+.|+|++|+.+|.+||++|....... +++.... .-.....=|.+||.-.
T Consensus         7 ~~~~Ai~lv~~Ave~D~~g~y~eAl~lY~~aie~l~~~lk~e-~d~~~k~-~ir~K~~eY~~RAE~L   71 (83)
T 2v6y_A            7 LEDMARKYAILAVKADKEGKVEDAITYYKKAIEVLSQIIVLY-PESVART-AYEQMINEYKKRISYL   71 (83)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHC-TTCTTHH-HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHC-CCHHHHH-HHHHHHHHHHHHHHHH
Confidence            456788888999999999999999999999999886643222 2222212 2233444566666543

>2cpt_A SKD1 protein, vacuolar sorting protein 4B; MIT, helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.7.14.1

Probab=94.36  E-value=0.16  Score=38.08  Aligned_cols=68  Identities=13%  Similarity=0.122  Sum_probs=44.9

Q ss_pred             hhhhhhhhhHhhhhhHHhhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHH
Q 021445          207 WWMNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKL  275 (312)
Q Consensus       207 ~~~~~~~~~k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~  275 (312)
                      ..++.|..+..+|...=+.++|++|+.+|..|+++|.........++.... .-...+.-|++||.-.-
T Consensus        13 ~~l~kAi~lv~~Ave~D~ag~y~eAl~lY~~Aie~l~~alk~e~~~~~~k~-~lr~K~~eYl~RAE~LK   80 (117)
T 2cpt_A           13 PNLQKAIDLASKAAQEDKAGNYEEALQLYQHAVQYFLHVVKYEAQGDKAKQ-SIRAKCTEYLDRAEKLK   80 (117)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTSCCCHHHHH-HHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHhccCCHHHHH-HHHHHHHHHHHHHHHHH
Confidence            356678888889999999999999999999999987654332223332222 22233445566655443

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A

Probab=94.30  E-value=0.17  Score=45.82  Aligned_cols=96  Identities=9%  Similarity=-0.027  Sum_probs=60.7

Q ss_pred             hhhHhhhhhHHh---hhcHHHHHHHHHHHHHHhhhc--------------cccCCCCchhhh------------HHHHHH
Q 021445          213 DSIKVFGNEHYK---KQDYKMALRKYRKALRYLDIC--------------WEKEGIDEGKSS------------SLRKTK  263 (312)
Q Consensus       213 ~~~k~~Gn~~~~---~~~y~~A~~~Y~kal~~l~~~--------------~~~~~~~~~~~~------------~~~~~~  263 (312)
                      -.+.-+|..++.   ...+.+|+.+|++||+.=...              ............            ...+..
T Consensus       197 ydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lDP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a~~~~~~~  276 (372)
T 3ly7_A          197 LTNFYQAHDYLLHGDDKSLNRASELLGEIVQSSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVTLPELNNL  276 (372)
T ss_dssp             HHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGGGTTC
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHhcccCCcC
Confidence            334556666654   456789999999999731110              000111111111            112333


Q ss_pred             HHHHhHHHHHHHHcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHhh
Q 021445          264 SQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQVSI  309 (312)
Q Consensus       264 ~~~~~N~a~~~~kl~~~~~Ai~~~~~al~l~p~~~Ka~~rrg~a~~  309 (312)
                      ..+|.-++..++..|++++|+..+++||.++|+ .-+|..+|+++.
T Consensus       277 a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s-~~a~~llG~~~~  321 (372)
T 3ly7_A          277 SIIYQIKAVSALVKGKTDESYQAINTGIDLEMS-WLNYVLLGKVYE  321 (372)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHH
Confidence            445555777788889999999999999999974 678888888775

>3kop_A Uncharacterized protein; protein with A cyclophilin-like fold, structural genomics, J center for structural genomics, JCSG; 1.90A {Arthrobacter SP}

Probab=94.23  E-value=0.27  Score=39.31  Aligned_cols=118  Identities=15%  Similarity=0.189  Sum_probs=65.6

Q ss_pred             EEEEEEECCeeee-EEEEEEeCCCCchhHHhHHHHhhCCCCCCCCCCCCceecCCEEEEeecC--CeEEeCCCCCCCCCC
Q 021445            6 CFLDISIGVELEG-RIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRVIKG--FMIQGGDISAGDGTG   82 (312)
Q Consensus         6 v~~d~~~~~~~~G-~i~ieL~~~~aP~~~~nF~~l~~~~~~~~~~~~~~~~Y~g~~~~rv~~~--~~iq~G~~~~~~~~~   82 (312)
                      .|+.|++...  | .++.+|..+.||+||+.|.++-=              |.+..+|-..-+  .++--|++..     
T Consensus        22 r~i~itl~~~--g~~~~A~Lldd~APkTcaA~~~~LP--------------~~~~viHarwSGeeVy~~lp~f~~-----   80 (188)
T 3kop_A           22 RYINITLEKR--GVTCKALLLDDVAPRTSKAVWDALP--------------QSSQVFHGKYARNEIYNLVPAFAP-----   80 (188)
T ss_dssp             CEEEEEETTT--TEEEEEEECTTTSHHHHHHHHHHCC--------------EEEECEECSSSSSEEEEEEECCSS-----
T ss_pred             eEEEEEEecC--CeEEEEEEccccChHHHHHHHHhCC--------------CCcceEEEEEecceEEEECCcccc-----
Confidence            4677777532  4 48899999999999999999632              333334333333  2333333210     


Q ss_pred             CCcccCCCCCCCcccccCCCcceEEeecC----------C--C------CCCCceEEEecCCCCC-CCCC-----CceEE
Q 021445           83 GESIYGLKFEDENFELKHERKGMLSMANA----------G--P------NTNGSQFFITTTRTSH-LDGK-----HVVFG  138 (312)
Q Consensus        83 ~~~~~~~~~~~e~~~~~~~~~G~l~~~~~----------~--~------~~~~sqF~I~~~~~~~-ld~~-----~~vfG  138 (312)
                            .....|| ...+..+|-|++-..          |  +      .+....+.|-.+.+.. ++++     -.+|+
T Consensus        81 ------~~~g~EN-~T~~P~pGDIl~f~f~p~~lG~~~yGy~~~~~~~~~~~~~dl~ifYG~~~~l~~~~~GwlpGN~F~  153 (188)
T 3kop_A           81 ------KEPGAEN-TTVTPIPGDVCYFTFTSNDLKTPSHGYEADSGTDEVQTIVDLAVFYGRNNLLLNGDTGWVPGNVFA  153 (188)
T ss_dssp             ------SCCCSCS-EESSCCTTEEEEEEEEHHHHSSGGGCC--------CCEEEEEEEECSSSCCCEETTTEECCEEEEE
T ss_pred             ------cCCCcCC-CCCCCCCCcEEEEecCCcccCCccccccccccccCCCcceEEEEEecccccccccccceecCcEEE
Confidence                  0123344 233445677776311          1  0      1112456666665432 2322     36899


Q ss_pred             EEEeChHHHHHHh
Q 021445          139 RVIKGMGVVRSIE  151 (312)
Q Consensus       139 ~V~~G~~vl~~i~  151 (312)
                      +|++|+|-+.++-
T Consensus       154 TIveGle~la~~c  166 (188)
T 3kop_A          154 TIVEGLDEMAAAC  166 (188)
T ss_dssp             EEEESHHHHHHHH
T ss_pred             EEecCHHHHHHHH
Confidence            9999998876553

>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}

Probab=94.14  E-value=0.28  Score=48.73  Aligned_cols=50  Identities=16%  Similarity=0.109  Sum_probs=43.1

Q ss_pred             HHHHHhHHHHHHHHcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHhhhhC
Q 021445          263 KSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQVSIILL  312 (312)
Q Consensus       263 ~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~l~p~~~Ka~~rrg~a~~~L~  312 (312)
                      ...++.--|.-++..++|+-|++.+.+|..+-|...++|++.|++|..|+
T Consensus       336 ~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~  385 (754)
T 4gns_B          336 MSDLLNIQTNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKE  385 (754)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTT
T ss_pred             chHHHHHHHHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhc
Confidence            34455556777778899999999999999999999999999999999874

>1wfd_A Hypothetical protein 1500032H18; MIT domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.7.14.1

Probab=93.33  E-value=0.32  Score=34.84  Aligned_cols=66  Identities=15%  Similarity=0.079  Sum_probs=44.0

Q ss_pred             hhhhhhhhhHhhhhhHHhhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHH
Q 021445          207 WWMNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACK  274 (312)
Q Consensus       207 ~~~~~~~~~k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~  274 (312)
                      ..++.|..+..+|..+=+.++|++|+.+|..|+++|..... ...++.... .-...+.-|++||.-.
T Consensus        10 ~~l~~Ai~lv~~Ave~D~~g~y~eAl~~Y~~Aie~l~~alk-~e~~~~~k~-~l~~K~~eYl~RAE~L   75 (93)
T 1wfd_A           10 SDSTAAVAVLKRAVELDAESRYQQALVCYQEGIDMLLQVLK-GTKESSKRC-VLRTKISGYMDRAENI   75 (93)
T ss_dssp             CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHH-TCCCHHHHH-HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHH-HCCCHHHHH-HHHHHHHHHHHHHHHH
Confidence            34567888889999999999999999999999998765422 222322222 2233344566665543

>4a5x_A MITD1, MIT domain-containing protein 1; protein transport, ESCRT, cytokinesis, midbody; HET: P15; 1.91A {Homo sapiens}

Probab=92.86  E-value=0.29  Score=34.49  Aligned_cols=35  Identities=20%  Similarity=0.170  Sum_probs=30.2

Q ss_pred             hhhhhHhhhhhHHhhhcHHHHHHHHHHHHHHhhhc
Q 021445          211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDIC  245 (312)
Q Consensus       211 ~~~~~k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~  245 (312)
                      .+..+..+|..+=+.|+|++|+.+|..||++|...
T Consensus        15 ~A~~lv~~Ave~D~~g~y~eAl~lY~~Aie~ll~a   49 (86)
T 4a5x_A           15 AAATVLKRAVELDSESRYPQALVCYQEGIDLLLQV   49 (86)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Confidence            56667888888899999999999999999987654

>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}

Probab=92.76  E-value=0.13  Score=51.18  Aligned_cols=59  Identities=19%  Similarity=0.259  Sum_probs=51.2

Q ss_pred             hhHhhhhhHHhhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHcCCHHHHHHHHHHH
Q 021445          214 SIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA  290 (312)
Q Consensus       214 ~~k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~a  290 (312)
                      -|..++.-+.++|+|+.|+.+-++|+.                  ..|..-..|..+|.||.+|++|+.|+-..+.+
T Consensus       339 LL~~Qa~FLl~K~~~elAL~~Ak~AV~------------------~aPseF~tW~~La~vYi~l~d~e~ALLtLNSc  397 (754)
T 4gns_B          339 LLNIQTNFLLNRGDYELALGVSNTSTE------------------LALDSFESWYNLARCHIKKEEYEKALFAINSM  397 (754)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHH------------------HCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred             HHHHHHHHHhccCcHHHHHHHHHHHHh------------------cCchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence            456677888899999999999999999                  45666779999999999999999999877766

>2v6x_A Vacuolar protein sorting-associated protein 4; protein transport, vacuole, endosome, transport, ESCRT-III, VPS2, VPS4, SKD1, VPS4B, VPS4A; 1.98A {Saccharomyces cerevisiae}

Probab=92.55  E-value=0.34  Score=33.95  Aligned_cols=38  Identities=16%  Similarity=0.213  Sum_probs=32.7

Q ss_pred             hhhhhhhhHhhhhhHHhhhcHHHHHHHHHHHHHHhhhc
Q 021445          208 WMNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDIC  245 (312)
Q Consensus       208 ~~~~~~~~k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~  245 (312)
                      .++.|..+..+|...=+.|+|++|+..|..|+++|...
T Consensus         9 ~l~~A~~l~~~Av~~D~~g~y~eAl~~Y~~aie~l~~a   46 (85)
T 2v6x_A            9 FLTKGIELVQKAIDLDTATQYEEAYTAYYNGLDYLMLA   46 (85)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Confidence            45677788889999999999999999999999987553

>2nnz_A Hypothetical protein; beta-barrel, structural genomics, ontario centre for structu proteomics, OCSP, unknown function; NMR {Archaeoglobus fulgidus}

Probab=92.42  E-value=0.65  Score=36.48  Aligned_cols=105  Identities=20%  Similarity=0.212  Sum_probs=61.1

Q ss_pred             EEEEECCeeeeEEEEEEeCCCCchhHHhHHHHhhCCCCCCCCCCCCceecCCEEEEeecCCeEEeCCCCCCCCCCCCccc
Q 021445            8 LDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRVIKGFMIQGGDISAGDGTGGESIY   87 (312)
Q Consensus         8 ~d~~~~~~~~G~i~ieL~~~~aP~~~~nF~~l~~~~~~~~~~~~~~~~Y~g~~~~rv~~~~~iq~G~~~~~~~~~~~~~~   87 (312)
                      +.|.+++   ..++++|+.+.||.||+.|+++-=-              ... +.+ ..+ -+.+ ++...         
T Consensus        32 I~i~~~~---~~~~a~L~D~~aP~Ta~~f~~~LPl--------------~~~-~~~-~g~-E~y~-~lp~~---------   81 (153)
T 2nnz_A           32 LRIRFES---AECEVELYEEWAPETVRAIADALPI--------------KST-ANR-WGD-EIYF-TTQVA---------   81 (153)
T ss_dssp             EEEEETT---EEEEECCCTTSCHHHHHHHHHTCSE--------------EEE-EEE-ETT-EEEE-CCSCC---------
T ss_pred             EEEEECC---EEEEEEEcCCCCHHHHHHHHHhCCc--------------EEE-HHh-hCC-cEEE-ECCCC---------
Confidence            4455664   6799999999999999999997321              111 112 111 1111 11100         


Q ss_pred             CCCCCCCcccccCCCcceEEeecCCCCCCCceEEEecCCCCCCC------CCCceEEEEEeChHHHHHH
Q 021445           88 GLKFEDENFELKHERKGMLSMANAGPNTNGSQFFITTTRTSHLD------GKHVVFGRVIKGMGVVRSI  150 (312)
Q Consensus        88 ~~~~~~e~~~~~~~~~G~l~~~~~~~~~~~sqF~I~~~~~~~ld------~~~~vfG~V~~G~~vl~~i  150 (312)
                       .... |+ ......+|-|++-..+.     .+.|-.++.|...      ..-.+||+|.+|++.|..+
T Consensus        82 -l~~~-en-~~~~~~~GDI~Yy~pg~-----~LaIFYg~~p~s~~e~~~as~~~~lG~I~~gle~L~~~  142 (153)
T 2nnz_A           82 -VEKE-EN-SKDVVELGDVAYWIPGK-----AICLFFGKTPISDDKIRPASAVNVIGRIVNSMEGLKGV  142 (153)
T ss_dssp             -CCCS-SC-CBCCCCTTEEEEETTTT-----EEEEESSCCTTCTTSCCCCSSEEEEEECCSCCCCGGGC
T ss_pred             -CCCC-CC-CcccCCCCeEEEeCCCC-----EEEEEECCccccccccccccccEEEEEEccCHHHHhhC
Confidence             0111 22 22334679998877653     3777777764322      2247899999998777655

>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A

Probab=92.09  E-value=0.42  Score=34.39  Aligned_cols=46  Identities=17%  Similarity=-0.077  Sum_probs=39.6

Q ss_pred             HHhHHHHHHHHcCCHHHHHHHHHHHHHcC-------CCchHHHHHHHHHhhhh
Q 021445          266 IFTNSSACKLKLGDLKGALLDTEFAMRDG-------DDNVKALFRQGQVSIIL  311 (312)
Q Consensus       266 ~~~N~a~~~~kl~~~~~Ai~~~~~al~l~-------p~~~Ka~~rrg~a~~~L  311 (312)
                      -++.+|..++++++|..|+..+.+|++..       +..+..+...|.|+..+
T Consensus         7 dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~   59 (104)
T 2v5f_A            7 DCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQ   59 (104)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHc
Confidence            45789999999999999999999999763       45678899999998865

>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*

Probab=91.44  E-value=0.17  Score=44.31  Aligned_cols=64  Identities=9%  Similarity=-0.019  Sum_probs=52.7

Q ss_pred             hHhhhhhHHhh-----hcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHH-HHHHhHHHHHHHH-cCCHHHHHHHH
Q 021445          215 IKVFGNEHYKK-----QDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTK-SQIFTNSSACKLK-LGDLKGALLDT  287 (312)
Q Consensus       215 ~k~~Gn~~~~~-----~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~N~a~~~~k-l~~~~~Ai~~~  287 (312)
                      +.-.|.-+.+.     |+.++|.++|++||+                  ++|.. +..+.-.|..+.. ++++++|.+.+
T Consensus       202 ~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~------------------LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L  263 (301)
T 3u64_A          202 WNVLTKFYAAAPESFGGGMEKAHTAFEHLTR------------------YCSAHDPDHHITYADALCIPLNNRAGFDEAL  263 (301)
T ss_dssp             HHHHHHHHHHSCTTTTCCHHHHHHHHHHHHH------------------HCCTTCSHHHHHHHHHTTTTTTCHHHHHHHH
T ss_pred             HHHHHHHHHhCCCccCCCHHHHHHHHHHHHH------------------hCCCCCchHHHHHHHHHHHhcCCHHHHHHHH
Confidence            34455555563     899999999999999                  66654 7788888998888 59999999999


Q ss_pred             HHHHHcCCC
Q 021445          288 EFAMRDGDD  296 (312)
Q Consensus       288 ~~al~l~p~  296 (312)
                      ++||..+|.
T Consensus       264 ~kAL~a~p~  272 (301)
T 3u64_A          264 DRALAIDPE  272 (301)
T ss_dssp             HHHHHCCGG
T ss_pred             HHHHcCCCC
Confidence            999998876

>3mv2_A Coatomer subunit alpha; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_A

Probab=91.20  E-value=1.3  Score=39.06  Aligned_cols=85  Identities=12%  Similarity=0.119  Sum_probs=53.4

Q ss_pred             hhHhhhhhHHhhhcHHHHHHHHHHHHHHhhhccc----------------------------cCCCCchhh---h-----
Q 021445          214 SIKVFGNEHYKKQDYKMALRKYRKALRYLDICWE----------------------------KEGIDEGKS---S-----  257 (312)
Q Consensus       214 ~~k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~----------------------------~~~~~~~~~---~-----  257 (312)
                      ...+.|-.+++.|+|++|+..|+.+|..+-...-                            ......++.   .     
T Consensus       116 ~~Lk~gyk~~t~gKf~eAl~~Fr~iL~~i~l~~v~~~~e~~e~~eli~icrEYilal~iEl~Rr~l~~~~~kR~lELAAY  195 (325)
T 3mv2_A          116 EKMNEGYKNFKLNKPDIAIECFREAIYRITLLMVDDAEDEKLAHKILETAREYILGLSIELERRSLKEGNTVRMLELAAY  195 (325)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCCBCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHHhheeeeccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHH
Confidence            3456899999999999999999998865422110                            011111110   0     


Q ss_pred             ----HHHHHHHH-HHhHHHHHHHHcCCHHHHHHHHHHHHHcCCCch
Q 021445          258 ----SLRKTKSQ-IFTNSSACKLKLGDLKGALLDTEFAMRDGDDNV  298 (312)
Q Consensus       258 ----~~~~~~~~-~~~N~a~~~~kl~~~~~Ai~~~~~al~l~p~~~  298 (312)
                          .+.+.... ++..--...+|.++|.-|...+.+.|++.|.-.
T Consensus       196 FT~c~LQp~H~~LaLr~AM~~a~K~KNy~tAa~fArrLLel~p~~~  241 (325)
T 3mv2_A          196 FTKAKLSPIHRTNALQVAMSQHFKHKNFLQASYFAGEFLKIISSGP  241 (325)
T ss_dssp             GGGSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSH
T ss_pred             hccCCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCHH
Confidence                11222222 222233346789999999999999999998544

>2dl1_A Spartin; SPG20, MIT, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=88.43  E-value=2.2  Score=31.58  Aligned_cols=79  Identities=11%  Similarity=-0.029  Sum_probs=58.7

Q ss_pred             hhhhhhhhhhHhhhhhHHhhhcHHHHHHHHHHHHHHhhhccc----cCCCCchhhhHHHHHHHHHHhHHHHHHHHcCCHH
Q 021445          206 SWWMNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWE----KEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLK  281 (312)
Q Consensus       206 ~~~~~~~~~~k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~----~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~  281 (312)
                      ....+.|-.+.++|-.+=..|+-+.|++.|+++|..|..-..    ..+...+.+.....+....-.||..+.-+|+..+
T Consensus        16 k~~h~~AF~~Is~AL~~DE~g~k~~Al~lYk~GI~eLe~Gl~I~~~~~~~~g~~we~Ar~lq~KM~~nL~~v~~RL~~Le   95 (116)
T 2dl1_A           16 REAYKKAFLFVNKGLNTDELGQKEEAKNYYKQGIGHLLRGISISSKESEHTGPGWESARQMQQKMKETLQNVRTRLEILE   95 (116)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSCCCCTTCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344556666677777777789999999999999998876432    1235667777788888889999999998887655


Q ss_pred             HHH
Q 021445          282 GAL  284 (312)
Q Consensus       282 ~Ai  284 (312)
                      ...
T Consensus        96 ~~~   98 (116)
T 2dl1_A           96 KGL   98 (116)
T ss_dssp             HHH
T ss_pred             hcC
Confidence            443

>3mkr_B Coatomer subunit alpha; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=86.57  E-value=3.2  Score=36.57  Aligned_cols=84  Identities=11%  Similarity=0.118  Sum_probs=53.3

Q ss_pred             hhHhhhhhHHhhhcHHHHHHHHHHHHHHhhhcc---------------------------c-cCCCCc---hhh---h--
Q 021445          214 SIKVFGNEHYKKQDYKMALRKYRKALRYLDICW---------------------------E-KEGIDE---GKS---S--  257 (312)
Q Consensus       214 ~~k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~---------------------------~-~~~~~~---~~~---~--  257 (312)
                      ...+.|-.+++.|++++|+..|+..|..+-...                           . ......   ++.   .  
T Consensus       104 ~~Lk~gyk~~t~gKf~eAl~~Fr~iL~~i~l~~v~~~~e~~e~~eli~icreYilal~iEl~Rr~l~~~~~~~~kR~lEL  183 (320)
T 3mkr_B          104 QRLQLCYQLTTVGKFEEAVEKFRSILLSVPLLVVDNKQEIAEAQQLITICREYIVGLSMETERKKLPKETLEQQKRICEM  183 (320)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHGGGCCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCSHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHHhhheeeccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCchhHHHHHHH
Confidence            356889999999999999999999887652110                           0 111111   110   0  


Q ss_pred             -------HHHHHHHHH-HhHHHHHHHHcCCHHHHHHHHHHHHHcCCCc
Q 021445          258 -------SLRKTKSQI-FTNSSACKLKLGDLKGALLDTEFAMRDGDDN  297 (312)
Q Consensus       258 -------~~~~~~~~~-~~N~a~~~~kl~~~~~Ai~~~~~al~l~p~~  297 (312)
                             .+.+....+ +..--...+|.++|.-|...+.+.|++.|.-
T Consensus       184 AAYFT~c~Lqp~H~~LaLr~AM~~a~K~KNy~tAa~fArrLLel~p~~  231 (320)
T 3mkr_B          184 AAYFTHSNLQPVHMILVLRTALNLFFKLKNFRTAAAFARRLLELGPKP  231 (320)
T ss_dssp             HHHHTTSCCCHHHHHHHHHHHHHHHHHTTBHHHHHHHHHHHHHTCCCH
T ss_pred             HHHhccCCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCH
Confidence                   112222222 2223334678999999999999999998853

>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=86.02  E-value=1.5  Score=40.35  Aligned_cols=66  Identities=12%  Similarity=-0.068  Sum_probs=54.7

Q ss_pred             hhhHhhhhhHHhhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHcCCHHHHHHHHHHHHH
Q 021445          213 DSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMR  292 (312)
Q Consensus       213 ~~~k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~  292 (312)
                      ..+...|.-+++.|++++|++.|.++...+...               .....++.+...+++..++|..|....++|..
T Consensus       132 ~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~---------------~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~  196 (429)
T 4b4t_R          132 QAWINLGEYYAQIGDKDNAEKTLGKSLSKAIST---------------GAKIDVMLTIARLGFFYNDQLYVKEKLEAVNS  196 (429)
T ss_dssp             SCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCC---------------CSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCh---------------HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence            346789999999999999999999998865331               23466888999999999999999999999874


Q ss_pred             c
Q 021445          293 D  293 (312)
Q Consensus       293 l  293 (312)
                      +
T Consensus       197 ~  197 (429)
T 4b4t_R          197 M  197 (429)
T ss_dssp             H
T ss_pred             h
Confidence            4

>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1

Probab=85.34  E-value=0.95  Score=32.00  Aligned_cols=36  Identities=22%  Similarity=0.228  Sum_probs=30.1

Q ss_pred             hhhhhhhHhhhhhHHhhhcHHHHHHHHHHHHHHhhh
Q 021445          209 MNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDI  244 (312)
Q Consensus       209 ~~~~~~~k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~  244 (312)
                      +..|-..--++..+.+.|+|++||.+..+|..+|..
T Consensus        12 Ln~AH~~~RrAe~ll~~gkydeAIech~kAa~yL~e   47 (97)
T 2crb_A           12 LNLAHQQSRRADRLLAAGKYEEAISCHRKATTYLSE   47 (97)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             hhhhhHhhhHHHHHHhcCCHHHHHHHHHHHHHHHHH
Confidence            345555667899999999999999999999998755

>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1

Probab=83.96  E-value=1.9  Score=37.11  Aligned_cols=69  Identities=10%  Similarity=0.010  Sum_probs=55.5

Q ss_pred             hhhHHhhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHcCCHHHHHHHHHHHHHcCCCch
Q 021445          219 GNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNV  298 (312)
Q Consensus       219 Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~l~p~~~  298 (312)
                      ...+++.++.++|+......|+                  -+|....+-.-+-.-+.-.|+|+.|+..++.+.+++|...
T Consensus         4 ~~~ll~~g~L~~al~~~~~~VR------------------~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~   65 (273)
T 1zbp_A            4 WKNALSEGQLQQALELLIEAIK------------------ASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYL   65 (273)
T ss_dssp             HHHHTTTTCHHHHHHHHHHHHH------------------TCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGH
T ss_pred             HHHHHhCCCHHHHHHHHHHHHH------------------hCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhh
Confidence            4578899999999999999998                  3444555555666677778999999999999999999888


Q ss_pred             HH--HHHHH
Q 021445          299 KA--LFRQG  305 (312)
Q Consensus       299 Ka--~~rrg  305 (312)
                      +.  .||..
T Consensus        66 ~~a~~yr~l   74 (273)
T 1zbp_A           66 PGASQLRHL   74 (273)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            75  45543

>2vkj_A TM1634; membrane protein, TPR motif joint center for structural GENO JCSG, structural genomics; 1.65A {Thermotoga maritima} PDB: 2vko_A*

Probab=80.44  E-value=5.5  Score=27.92  Aligned_cols=32  Identities=25%  Similarity=0.388  Sum_probs=29.2

Q ss_pred             hhhhhhHhhhhhHHhhhcHHHHHHHHHHHHHH
Q 021445          210 NAVDSIKVFGNEHYKKQDYKMALRKYRKALRY  241 (312)
Q Consensus       210 ~~~~~~k~~Gn~~~~~~~y~~A~~~Y~kal~~  241 (312)
                      +.++.+..+|.++|+.++|.+|+..++++...
T Consensus        51 ~~~r~~i~eak~~y~~~ny~ea~~l~~k~~n~   82 (106)
T 2vkj_A           51 KKARSLIAEGKDLFETANYGEALVFFEKALNL   82 (106)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHhcchhHHHHHHHHHHcc
Confidence            56888899999999999999999999999973

>2wb7_A PT26-6P; extra chromosomal elements, unknown function; 2.60A {Thermococcus SP}

Probab=80.39  E-value=2.2  Score=39.60  Aligned_cols=19  Identities=21%  Similarity=0.254  Sum_probs=16.2

Q ss_pred             HHHHHHHHHHHHHHhhhcc
Q 021445          228 YKMALRKYRKALRYLDICW  246 (312)
Q Consensus       228 y~~A~~~Y~kal~~l~~~~  246 (312)
                      -++|+++|++||++|+...
T Consensus       448 A~kAi~~Y~~Ai~~L~k~~  466 (526)
T 2wb7_A          448 AQGAIDEYKAAINDLQKAA  466 (526)
T ss_dssp             HHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHhhh
Confidence            4789999999999998753

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=80.37  E-value=2.6  Score=41.32  Aligned_cols=76  Identities=16%  Similarity=0.108  Sum_probs=44.9

Q ss_pred             hhhhHhhhhhHHhhhcHHHHHHHHHHHHH-----HhhhccccCCCCchhhhHHHHHHH-HHHhHH-HHHHHHcCCHHHHH
Q 021445          212 VDSIKVFGNEHYKKQDYKMALRKYRKALR-----YLDICWEKEGIDEGKSSSLRKTKS-QIFTNS-SACKLKLGDLKGAL  284 (312)
Q Consensus       212 ~~~~k~~Gn~~~~~~~y~~A~~~Y~kal~-----~l~~~~~~~~~~~~~~~~~~~~~~-~~~~N~-a~~~~kl~~~~~Ai  284 (312)
                      ...|++.|..+.+.++++.|.++|.++=.     .|...    ..+.+....+..... .-..|. -.+++++|++++|+
T Consensus       681 ~~~W~~la~~al~~~~~~~A~~~y~~~~d~~~l~~l~~~----~~~~~~~~~~~~~a~~~~~~~~A~~~~~~~g~~~~a~  756 (814)
T 3mkq_A          681 EMKWRALGDASLQRFNFKLAIEAFTNAHDLESLFLLHSS----FNNKEGLVTLAKDAETTGKFNLAFNAYWIAGDIQGAK  756 (814)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHTCHHHHHHHHHH----TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTCHHHHH
T ss_pred             HhHHHHHHHHHHHcCCHHHHHHHHHHccChhhhHHHHHH----cCCHHHHHHHHHHHHHcCchHHHHHHHHHcCCHHHHH
Confidence            44578999999999999999999998622     22111    111121111111111 111233 34788888888888


Q ss_pred             HHHHHHH
Q 021445          285 LDTEFAM  291 (312)
Q Consensus       285 ~~~~~al  291 (312)
                      +.|.+.-
T Consensus       757 ~~~~~~~  763 (814)
T 3mkq_A          757 DLLIKSQ  763 (814)
T ss_dssp             HHHHHTT
T ss_pred             HHHHHcC
Confidence            8775543

>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A

Probab=80.33  E-value=8.1  Score=35.14  Aligned_cols=79  Identities=16%  Similarity=0.014  Sum_probs=60.5

Q ss_pred             hhhhhHHhhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHcCCHHHHHHHHHHHHHcC--
Q 021445          217 VFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDG--  294 (312)
Q Consensus       217 ~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~l~--  294 (312)
                      ..|.-++..|+|.+|+..+++.++.+...      +      -......+|...+..|..++++.++...+++|....  
T Consensus       104 kL~~l~~~~~~y~~a~~~i~~l~~~~~~~------d------d~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~a  171 (394)
T 3txn_A          104 RLIALYFDTALYTEALALGAQLLRELKKL------D------DKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANA  171 (394)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHTTS------S------CTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhhhHHHHHHHHHHHHHHHhcc------c------cchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhcc
Confidence            57888999999999999999999977542      1      135677899999999999999999999999887443  


Q ss_pred             ---CCchHHHHHHHHH
Q 021445          295 ---DDNVKALFRQGQV  307 (312)
Q Consensus       295 ---p~~~Ka~~rrg~a  307 (312)
                         |....|.++....
T Consensus       172 i~~~p~i~a~i~~~~G  187 (394)
T 3txn_A          172 IYCPPKVQGALDLQSG  187 (394)
T ss_dssp             SCCCHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHhh
Confidence               2234455554333

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	312
d1a33a_	174	b.62.1.1 (A:) Cyclophilin (eukaryotic) {Nematode (	3e-62
d1ihga2	195	b.62.1.1 (A:2-196) Cyclophilin 40 isomerase domain	2e-61
d2igva1	172	b.62.1.1 (A:1-172) Cyclophilin (eukaryotic) {Caeno	2e-58
d1qnga_	170	b.62.1.1 (A:) Cyclophilin (eukaryotic) {Plasmodium	1e-55
d2cfea1	162	b.62.1.1 (A:1-162) Cyclophilin-like allergen Mal s	7e-55
d2rmca_	182	b.62.1.1 (A:) Cyclophilin (eukaryotic) {Mouse (Mus	2e-50
d1qoia_	173	b.62.1.1 (A:) Cyclophilin (eukaryotic) {Human (Hom	5e-50
d1h0pa_	182	b.62.1.1 (A:) Cyclophilin (eukaryotic) {Caenorhabd	2e-49
d2z6wa1	164	b.62.1.1 (A:2-165) Mitochondrial peptidyl-prolyl c	4e-49
d1xo7a_	166	b.62.1.1 (A:) Cyclophilin (eukaryotic) {Trypanosom	1e-48
d1z81a1	186	b.62.1.1 (A:25-210) Cyclophilin (eukaryotic) {Plas	4e-48
d2r99a1	161	b.62.1.1 (A:139-299) Mitochondrial peptidyl-prolyl	2e-46
d2c3ba1	171	b.62.1.1 (A:1-171) Cyclophilin (eukaryotic) {Asper	2e-46
d1zkca1	178	b.62.1.1 (A:280-457) Peptidyl-prolyl cis-trans iso	3e-43
d1xwna1	166	b.62.1.1 (A:1-166) Peptidyl-prolyl cis-trans isome	5e-43
d1w74a_	171	b.62.1.1 (A:) Peptidyl-prolyl cis-trans isomerase	5e-39
d2ok3a1	159	b.62.1.1 (A:1-159) Cyclophilin-like protein PPIL3B	2e-36
d2b71a1	169	b.62.1.1 (A:23-191) Cyclophilin-like protein PY006	8e-31
d2fu0a1	155	b.62.1.1 (A:5-159) Putative cyclophilin PFE0505w {	2e-30
d2a2na1	164	b.62.1.1 (A:483-646) Peptidylprolyl isomerase doma	3e-30
d1v9ta_	166	b.62.1.1 (A:) Peptidyl-prolyl cis-trans isomerase	1e-25
d1lopa_	164	b.62.1.1 (A:) Peptidyl-prolyl cis-trans isomerase	1e-25
d1ihga1	169	a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos tau	5e-12
d1p5qa1	170	a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal d	2e-05
d1kt1a1	168	a.118.8.1 (A:254-421) FKBP51, C-terminal domain {M	5e-05
d2fbna1	153	a.118.8.1 (A:22-174) Putative 70 kda peptidylproly	1e-04
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	5e-04
d2c2la1	201	a.118.8.1 (A:24-224) STIP1 homology and U box-cont	0.002

>d1a33a_ b.62.1.1 (A:) Cyclophilin (eukaryotic) {Nematode (Brugia malayi) [TaxId: 6279]} Length = 174

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin (eukaryotic)
species: Nematode (Brugia malayi) [TaxId: 6279]

 Score =  193 bits (490), Expect = 3e-62
 Identities = 101/171 (59%), Positives = 124/171 (72%)

Query: 3   RPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFH 62
           R R FLD++I   L GRI++E+YND+ P+T  NF  LCTG  G G  +G PLHYKG  FH
Sbjct: 3   RRRVFLDVTIDGNLAGRIVMELYNDIAPRTCNNFLMLCTGMAGTGKISGKPLHYKGSTFH 62

Query: 63  RVIKGFMIQGGDISAGDGTGGESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFFI 122
           RVIK FMIQGGD + GDGTGGESIYG  F+DE F +KH+   ++SMAN GPNTNGSQFFI
Sbjct: 63  RVIKNFMIQGGDFTKGDGTGGESIYGGMFDDEEFVMKHDEPFVVSMANKGPNTNGSQFFI 122

Query: 123 TTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTITDCGEI 173
           TTT   HL+  HVVFG+V+ G  VV  IE++ T   + P+ADV I +CGE+
Sbjct: 123 TTTPAPHLNNIHVVFGKVVSGQEVVTKIEYLKTNSKNRPLADVVILNCGEL 173

>d1ihga2 b.62.1.1 (A:2-196) Cyclophilin 40 isomerase domain {Cow (Bos taurus) [TaxId: 9913]} Length = 195

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin 40 isomerase domain
species: Cow (Bos taurus) [TaxId: 9913]

 Score =  191 bits (487), Expect = 2e-61
 Identities = 120/187 (64%), Positives = 142/187 (75%), Gaps = 3/187 (1%)

Query: 1   MARPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVR 60
            + PR F D+ IG E  GRI++E++ D++PKTAENFRALCTGEKGIGP TG PLH+KG  
Sbjct: 12  PSNPRVFFDVDIGGERVGRIVLELFADIVPKTAENFRALCTGEKGIGPTTGKPLHFKGCP 71

Query: 61  FHRVIKGFMIQGGDISAGDGTGGESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQF 120
           FHR+IK FMIQGGD S  +GTGGESIYG KFEDENF  KH+++G+LSMANAG NTNGSQF
Sbjct: 72  FHRIIKKFMIQGGDFSNQNGTGGESIYGEKFEDENFHYKHDKEGLLSMANAGSNTNGSQF 131

Query: 121 FITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTITDCGEIPEGADDG 180
           FITT  T HLDGKHVVFG+VIKGMGV + +E+V     + P     I +CGE+ EG D G
Sbjct: 132 FITTVPTPHLDGKHVVFGQVIKGMGVAKILENVEV-KGEKPAKLCVIAECGELKEGDDWG 190

Query: 181 ISNFFND 187
           I  F  D
Sbjct: 191 I--FPKD 195

>d2igva1 b.62.1.1 (A:1-172) Cyclophilin (eukaryotic) {Caenorhabditis elegans, isoform 3 [TaxId: 6239]} Length = 172

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin (eukaryotic)
species: Caenorhabditis elegans, isoform 3 [TaxId: 6239]

 Score =  183 bits (465), Expect = 2e-58
 Identities = 105/173 (60%), Positives = 134/173 (77%), Gaps = 2/173 (1%)

Query: 1   MARPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVR 60
           M+R + F DI+IG +  GRI++E+Y+DV+PKTA NFRALCTGE GIG + G PLH+KG +
Sbjct: 1   MSRSKVFFDITIGGKASGRIVMELYDDVVPKTAGNFRALCTGENGIGKS-GKPLHFKGSK 59

Query: 61  FHRVIKGFMIQGGDISAGDGTGGESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQF 120
           FHR+I  FMIQGGD + G+GTGGESIYG KF DENF+ KH   G+LSMANAGPNTNGSQF
Sbjct: 60  FHRIIPNFMIQGGDFTRGNGTGGESIYGEKFPDENFKEKHTGPGVLSMANAGPNTNGSQF 119

Query: 121 FITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTITDCGEI 173
           F+ T +T  LDGKHVVFGRV++G+ VV+++E      +  P+ D  I DCG++
Sbjct: 120 FLCTVKTEWLDGKHVVFGRVVEGLDVVKAVESN-GSQSGKPVKDCMIADCGQL 171

>d1qnga_ b.62.1.1 (A:) Cyclophilin (eukaryotic) {Plasmodium falciparum [TaxId: 5833]} Length = 170

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin (eukaryotic)
species: Plasmodium falciparum [TaxId: 5833]

 Score =  176 bits (446), Expect = 1e-55
 Identities = 99/171 (57%), Positives = 119/171 (69%), Gaps = 3/171 (1%)

Query: 3   RPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFH 62
           R + F DISI     GRII E+++D+ P+T ENFRALCTGEK    + G  LHYK   FH
Sbjct: 3   RSKVFFDISIDNSNAGRIIFELFSDITPRTCENFRALCTGEKI--GSRGKNLHYKNSIFH 60

Query: 63  RVIKGFMIQGGDISAGDGTGGESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFFI 122
           R+I  FM QGGDI+ G+G+GGESIYG  F DENF +KH++ G+LSMANAGPNTN SQFFI
Sbjct: 61  RIIPQFMCQGGDITNGNGSGGESIYGRSFTDENFNMKHDQPGLLSMANAGPNTNSSQFFI 120

Query: 123 TTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTITDCGEI 173
           T      LDGKHVVFG+VI+GM VVR +E      +      V ITDCGE+
Sbjct: 121 TLVPCPWLDGKHVVFGKVIEGMNVVREMEKEGA-KSGYVKRSVVITDCGEL 170

>d2cfea1 b.62.1.1 (A:1-162) Cyclophilin-like allergen Mal s 6 {Malassezia sympodialis [TaxId: 76777]} Length = 162

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin-like allergen Mal s 6
species: Malassezia sympodialis [TaxId: 76777]

 Score =  174 bits (441), Expect = 7e-55
 Identities = 99/168 (58%), Positives = 118/168 (70%), Gaps = 9/168 (5%)

Query: 4   PRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHR 63
              F DI+      G I  ++++DV+PKTA NFRALCTGEKG G        Y G  FHR
Sbjct: 2   SNVFFDITKNGAPLGTIKFKLFDDVVPKTAANFRALCTGEKGFG--------YAGSHFHR 53

Query: 64  VIKGFMIQGGDISAGDGTGGESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFFIT 123
           VI  FM+QGGD +AG+GTGG+SIYG KF DENF+LKH + G+LSMANAGPNTNGSQFFIT
Sbjct: 54  VIPDFMLQGGDFTAGNGTGGKSIYGAKFADENFQLKHNKPGLLSMANAGPNTNGSQFFIT 113

Query: 124 TTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTITDCG 171
           T  TS LDGKHVVFG VI GM VV++IE   +G +  P + + I  CG
Sbjct: 114 TVVTSWLDGKHVVFGEVIDGMNVVKAIEAEGSG-SGKPRSRIEIAKCG 160

>d2rmca_ b.62.1.1 (A:) Cyclophilin (eukaryotic) {Mouse (Mus musculus), variant C [TaxId: 10090]} Length = 182

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin (eukaryotic)
species: Mouse (Mus musculus), variant C [TaxId: 10090]

 Score =  163 bits (413), Expect = 2e-50
 Identities = 103/191 (53%), Positives = 125/191 (65%), Gaps = 16/191 (8%)

Query: 4   PRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHR 63
            + F D+ IG +  GRI++ ++ +V+PKT ENF AL TGEKG G        YKG  FHR
Sbjct: 8   DKVFFDVRIGDKDVGRIVIGLFGNVVPKTVENFVALATGEKGYG--------YKGSIFHR 59

Query: 64  VIKGFMIQGGDISAGDGTGGESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFFIT 123
           VIK FMIQGGD +A DGTGG SIYG  F DENF+LKH   G +SMANAGP+TNGSQFFIT
Sbjct: 60  VIKDFMIQGGDFTARDGTGGMSIYGETFPDENFKLKHYGIGWVSMANAGPDTNGSQFFIT 119

Query: 124 TTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTITDCGEIPEGADDGISN 183
            T+ + LDGKHVVFG+V+ GM VV SIE   T  +D P+ D TI + G+I       +  
Sbjct: 120 LTKPTWLDGKHVVFGKVLDGMTVVHSIELQATDGHDRPLTDCTIVNSGKID------VKT 173

Query: 184 FFNDGDSYPDW 194
            F      PDW
Sbjct: 174 PF--VVEVPDW 182

>d1qoia_ b.62.1.1 (A:) Cyclophilin (eukaryotic) {Human (Homo sapiens), U4/U6 snRNP-specific cyclophilin snucyp-20 [TaxId: 9606]} Length = 173

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin (eukaryotic)
species: Human (Homo sapiens), U4/U6 snRNP-specific cyclophilin snucyp-20 [TaxId: 9606]

 Score =  161 bits (409), Expect = 5e-50
 Identities = 98/170 (57%), Positives = 121/170 (71%), Gaps = 3/170 (1%)

Query: 4   PRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHR 63
           P  F D+SIG +  GR+ +E++ DV+PKTAENFR  CTGE       GVP+ YKG  FHR
Sbjct: 7   PVVFFDVSIGGQEVGRMKIELFADVVPKTAENFRQFCTGEFR---KDGVPIGYKGSTFHR 63

Query: 64  VIKGFMIQGGDISAGDGTGGESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFFIT 123
           VIK FMIQGGD   GDGTG  SIY   F DENF+L+H   G+LSMAN+GP+TNG QFFIT
Sbjct: 64  VIKDFMIQGGDFVNGDGTGVASIYRGPFADENFKLRHSAPGLLSMANSGPSTNGCQFFIT 123

Query: 124 TTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTITDCGEI 173
            ++   LDGKHVVFG++I G+ V+R IE+V TG N+ P   V I+ CGE+
Sbjct: 124 CSKCDWLDGKHVVFGKIIDGLLVMRKIENVPTGPNNKPKLPVVISQCGEM 173

>d1h0pa_ b.62.1.1 (A:) Cyclophilin (eukaryotic) {Caenorhabditis elegans, isoform 5 [TaxId: 6239]} Length = 182

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin (eukaryotic)
species: Caenorhabditis elegans, isoform 5 [TaxId: 6239]

 Score =  160 bits (405), Expect = 2e-49
 Identities = 91/171 (53%), Positives = 109/171 (63%), Gaps = 8/171 (4%)

Query: 4   PRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHR 63
            R + D+ IG +  GRI++ ++   +PKTA NF  L    KG G        Y G +FHR
Sbjct: 7   DRVYFDMEIGGKPIGRIVIGLFGKTVPKTATNFIELAKKPKGEG--------YPGSKFHR 58

Query: 64  VIKGFMIQGGDISAGDGTGGESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFFIT 123
           VI  FMIQGGD + GDGTGG SIYG KF DENF+LKH   G LSMANAG +TNGSQFFIT
Sbjct: 59  VIADFMIQGGDFTRGDGTGGRSIYGEKFADENFKLKHYGAGWLSMANAGADTNGSQFFIT 118

Query: 124 TTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTITDCGEIP 174
           T +T  LDG+HVVFG++++GM VVR IE       D P  DV I   G I 
Sbjct: 119 TVKTPWLDGRHVVFGKILEGMDVVRKIEQTEKLPGDRPKQDVIIAASGHIA 169

>d2z6wa1 b.62.1.1 (A:2-165) Mitochondrial peptidyl-prolyl cis-trans isomerase, cyclophilin F {Human (Homo sapiens) [TaxId: 9606]} Length = 164

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Mitochondrial peptidyl-prolyl cis-trans isomerase, cyclophilin F
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  159 bits (402), Expect = 4e-49
 Identities = 95/170 (55%), Positives = 116/170 (68%), Gaps = 9/170 (5%)

Query: 4   PRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHR 63
           P  +LD+    +  GR+++E+  DV+PKTAENFRALCTGEKG          YKG  FHR
Sbjct: 3   PLVYLDVDANGKPLGRVVLELKADVVPKTAENFRALCTGEKGF--------GYKGSTFHR 54

Query: 64  VIKGFMIQGGDISAGDGTGGESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFFIT 123
           VI  FM Q GD +  +GTGG+SIYG +F DENF LKH   G+LSMANAGPNTNGSQFFI 
Sbjct: 55  VIPSFMCQAGDFTNHNGTGGKSIYGSRFPDENFTLKHVGPGVLSMANAGPNTNGSQFFIC 114

Query: 124 TTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTITDCGEI 173
           T +T  LDGKHVVFG VI+GM VV+ IE   +  +      + ITDCG++
Sbjct: 115 TIKTDWLDGKHVVFGHVIEGMDVVKKIESFGS-KSGRTSKKIVITDCGQL 163

>d1xo7a_ b.62.1.1 (A:) Cyclophilin (eukaryotic) {Trypanosoma cruzi [TaxId: 5693]} Length = 166

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin (eukaryotic)
species: Trypanosoma cruzi [TaxId: 5693]

 Score =  158 bits (399), Expect = 1e-48
 Identities = 90/170 (52%), Positives = 120/170 (70%), Gaps = 9/170 (5%)

Query: 4   PRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHR 63
            + + DI+IG E  GR+++ ++ + +PKT ENF+ L +GE G G        YKG  FHR
Sbjct: 6   DKVYFDITIGDEPVGRVVIGLFGNDVPKTVENFKQLASGENGFG--------YKGSIFHR 57

Query: 64  VIKGFMIQGGDISAGDGTGGESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFFIT 123
           VI+ FMIQGGD +  DGTGG+SIYG +F+DEN ++KH   G +SMANAGPN+NGSQFF+T
Sbjct: 58  VIRNFMIQGGDFTNFDGTGGKSIYGTRFDDENLKIKHFV-GAVSMANAGPNSNGSQFFVT 116

Query: 124 TTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTITDCGEI 173
           T  T  LDG+HVVFG+V++GM VV+ +E+  TG ND P   V I DCG +
Sbjct: 117 TAPTPWLDGRHVVFGKVVEGMDVVKKVENTKTGLNDKPKKAVKINDCGVL 166

>d1z81a1 b.62.1.1 (A:25-210) Cyclophilin (eukaryotic) {Plasmodium yoelii [TaxId: 5861]} Length = 186

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin (eukaryotic)
species: Plasmodium yoelii [TaxId: 5861]

 Score =  157 bits (397), Expect = 4e-48
 Identities = 83/173 (47%), Positives = 117/173 (67%), Gaps = 6/173 (3%)

Query: 4   PRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHR 63
           P  F+DI++G    G+   E++ +++PKT+ENFR  CTGE        +P+ YK   FHR
Sbjct: 17  PVVFMDINLGNNFLGKFKFELFQNIVPKTSENFRQFCTGEYK---VNNLPVGYKNTIFHR 73

Query: 64  VIKGFMIQGGDISAGDGTGGESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFFIT 123
           VIK FMIQGGD    +G+G  SIYG KF+DENF++KH+++G+LSMAN+GPNTNG QFFIT
Sbjct: 74  VIKEFMIQGGDFINHNGSGSLSIYGEKFDDENFDIKHDKEGLLSMANSGPNTNGCQFFIT 133

Query: 124 TTRTSHLDGKHVVFGRVIKG--MGVVRSIEHVMTGD-NDCPIADVTITDCGEI 173
           T +   LDGK+VVFGR+I    + +++ IE+V        P   + + +CGE+
Sbjct: 134 TKKCEWLDGKNVVFGRIIDNDSLLLLKKIENVSVTPYIYKPKIPINVVECGEL 186

>d2r99a1 b.62.1.1 (A:139-299) Mitochondrial peptidyl-prolyl cis-trans isomerase, cyclophilin F {Human (Homo sapiens) [TaxId: 9606]} Length = 161

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Mitochondrial peptidyl-prolyl cis-trans isomerase, cyclophilin F
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  152 bits (385), Expect = 2e-46
 Identities = 92/169 (54%), Positives = 114/169 (67%), Gaps = 9/169 (5%)

Query: 4   PRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHR 63
           P+ ++DI IG +  GRI + + +DV+P TAENFR LCT EKG          +KG  FHR
Sbjct: 2   PQVYMDIKIGNKPAGRIQMLLRSDVVPMTAENFRCLCTHEKGF--------GFKGSSFHR 53

Query: 64  VIKGFMIQGGDISAGDGTGGESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFFIT 123
           +I  FM QGGD +  +GTGG+SIYG KF+DENF LKH   G+LSMAN+GPNTNGSQFF+T
Sbjct: 54  IIPQFMCQGGDFTNHNGTGGKSIYGKKFDDENFILKHTGPGLLSMANSGPNTNGSQFFLT 113

Query: 124 TTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTITDCGE 172
             +T  LDGKHVVFG V +G+ V+R IE      +  P   V I DCGE
Sbjct: 114 CDKTDWLDGKHVVFGEVTEGLDVLRQIEAQ-GSKDGKPKQKVIIADCGE 161

>d2c3ba1 b.62.1.1 (A:1-171) Cyclophilin (eukaryotic) {Aspergillus fumigatus [TaxId: 5085]} Length = 171

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin (eukaryotic)
species: Aspergillus fumigatus [TaxId: 5085]

 Score =  152 bits (384), Expect = 2e-46
 Identities = 86/178 (48%), Positives = 107/178 (60%), Gaps = 16/178 (8%)

Query: 4   PRCFLDISIGVELE-----GRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKG 58
            + F D+            GRI+  +++  +PKTA+NFR LC    G          Y+ 
Sbjct: 2   SQVFFDVEYAPVGTAETKVGRIVFNLFDKDVPKTAKNFRELCKRPAGE--------GYRE 53

Query: 59  VRFHRVIKGFMIQGGDISAGDGTGGESIYGLKFEDENFELKHERKGMLSMANAGPNTNGS 118
             FHR+I  FMIQGGD + G+GTGG SIYG KF DENF  KH++KG+LSMANAGPNTNGS
Sbjct: 54  STFHRIIPNFMIQGGDFTRGNGTGGRSIYGDKFADENFSRKHDKKGILSMANAGPNTNGS 113

Query: 119 QFFITTTRTSHLDGKHVVFGRVI--KGMGVVRSIEHVMTGD-NDCPIADVTITDCGEI 173
           QFFITT  TS LDGKHVVFG V   K   VV+ IE + +   +        I +CGE+
Sbjct: 114 QFFITTAVTSWLDGKHVVFGEVADEKSYSVVKEIEALGSSSGSVRSNTRPKIVNCGEL 171

>d1zkca1 b.62.1.1 (A:280-457) Peptidyl-prolyl cis-trans isomerase-like 2, Cyclophilin-60, PPI domain {Human (Homo sapiens) [TaxId: 9606]} Length = 178

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Peptidyl-prolyl cis-trans isomerase-like 2, Cyclophilin-60, PPI domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  144 bits (364), Expect = 3e-43
 Identities = 69/171 (40%), Positives = 98/171 (57%), Gaps = 17/171 (9%)

Query: 14  VELE---GRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRVIKGFMI 70
           V L    G + +E++ D+ PKT ENF  LC              +Y G  FHR I+ F+I
Sbjct: 3   VRLHTNKGDLNLELHCDLTPKTCENFIRLCKKH-----------YYDGTIFHRSIRNFVI 51

Query: 71  QGGDISAGDGTGGESIYGLKFEDE-NFELKHERKGMLSMANAGPNTNGSQFFITTTRTSH 129
           QGGD + G GTGGES +G  F+DE    L H  +G+LSMAN+GPN+N SQFFIT    ++
Sbjct: 52  QGGDPT-GTGTGGESYWGKPFKDEFRPNLSHTGRGILSMANSGPNSNRSQFFITFRSCAY 110

Query: 130 LDGKHVVFGRVIKGMGVVRSIEHVMTGD-NDCPIADVTITDCGEIPEGADD 179
           LD KH +FGRV+ G  V+ ++E+V +    D P  ++ I       +  ++
Sbjct: 111 LDKKHTIFGRVVGGFDVLTAMENVESDPKTDRPKEEIRIDATTVFVDPYEE 161

>d1xwna1 b.62.1.1 (A:1-166) Peptidyl-prolyl cis-trans isomerase-like 1, PPIL1 {Human (Homo sapiens) [TaxId: 9606]} Length = 166

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Peptidyl-prolyl cis-trans isomerase-like 1, PPIL1
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  143 bits (362), Expect = 5e-43
 Identities = 77/166 (46%), Positives = 101/166 (60%), Gaps = 18/166 (10%)

Query: 4   PRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHR 63
           P  +L+ S+G      I++E+Y    PKT +NF  L               +Y G +FHR
Sbjct: 12  PNVYLETSMG-----IIVLELYWKHAPKTCKNFAELARRG-----------YYNGTKFHR 55

Query: 64  VIKGFMIQGGDISAGDGTGGESIYGLKFEDE-NFELKHERKGMLSMANAGPNTNGSQFFI 122
           +IK FMIQGGD + G G GG SIYG +FEDE + +LK    G+L+MANAGP+TNGSQFF+
Sbjct: 56  IIKDFMIQGGDPT-GTGRGGASIYGKQFEDELHPDLKFTGAGILAMANAGPDTNGSQFFV 114

Query: 123 TTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTIT 168
           T   T  LDGKH +FGRV +G+G+V  +  V T   D P+ DV I 
Sbjct: 115 TLAPTQWLDGKHTIFGRVCQGIGMVNRVGMVETNSQDRPVDDVKII 160

>d1w74a_ b.62.1.1 (A:) Peptidyl-prolyl cis-trans isomerase A, PpiA {Mycobacterium tuberculosis [TaxId: 1773]} Length = 171

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Peptidyl-prolyl cis-trans isomerase A, PpiA
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score =  133 bits (335), Expect = 5e-39
 Identities = 64/159 (40%), Positives = 84/159 (52%), Gaps = 9/159 (5%)

Query: 18  GRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTG----VPLHYKGVRFHRVIKGFMIQGG 73
           G I + ++ +  PKT  NF  L  G K               Y G  FHRVI+GFMIQGG
Sbjct: 13  GDIKIALFGNHAPKTVANFVGLAQGTKDYSTQNASGGPSGPFYDGAVFHRVIQGFMIQGG 72

Query: 74  DISAGDGTGGESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFFITTTRTSHLDGK 133
           D + G G GG        ++ + EL+ ++  +L+MANAGP TNGSQFFIT  +T HL+ +
Sbjct: 73  DPT-GTGRGGPGYK--FADEFHPELQFDKPYLLAMANAGPGTNGSQFFITVGKTPHLNRR 129

Query: 134 HVVFGRVI--KGMGVVRSIEHVMTGDNDCPIADVTITDC 170
           H +FG VI  +   VV +I    T  ND P   V I   
Sbjct: 130 HTIFGEVIDAESQRVVEAISKTATDGNDRPTDPVVIESI 168

>d2ok3a1 b.62.1.1 (A:1-159) Cyclophilin-like protein PPIL3B {Human (Homo sapiens) [TaxId: 9606]} Length = 159

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin-like protein PPIL3B
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  126 bits (317), Expect = 2e-36
 Identities = 73/155 (47%), Positives = 93/155 (60%), Gaps = 14/155 (9%)

Query: 18  GRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRVIKGFMIQGGDISA 77
           G I +E++ +  PKT ENF ALC              +Y G  FHR IKGFM+Q GD   
Sbjct: 10  GDIKIEVFCERTPKTCENFLALCA-----------SNYYNGCIFHRNIKGFMVQTGD-PT 57

Query: 78  GDGTGGESIYGLKFEDE-NFELKHERKGMLSMANAGPNTNGSQFFITTTRTSHLDGKHVV 136
           G G GG SI+G KFEDE +  LKH  +G++SMAN GPNTNGSQFFIT  +  HLD K+ V
Sbjct: 58  GTGRGGNSIWGKKFEDEYSEYLKHNVRGVVSMANNGPNTNGSQFFITYGKQPHLDMKYTV 117

Query: 137 FGRVIKGMGVVRSIEHVMTGD-NDCPIADVTITDC 170
           FG+VI G+  +  +E +   +    P+ DV I D 
Sbjct: 118 FGKVIDGLETLDELEKLPVNEKTYRPLNDVHIKDI 152

>d2b71a1 b.62.1.1 (A:23-191) Cyclophilin-like protein PY00693 {Plasmodium yoelii [TaxId: 5861]} Length = 169

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin-like protein PY00693
species: Plasmodium yoelii [TaxId: 5861]

 Score =  111 bits (279), Expect = 8e-31
 Identities = 74/155 (47%), Positives = 84/155 (54%), Gaps = 13/155 (8%)

Query: 18  GRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRVIKGFMIQGGDISA 77
           G   VE+Y    PKT  NF  LC               Y    FHRVI  F+IQGGD   
Sbjct: 26  GDFEVELYWYHSPKTCLNFYTLCEMG-----------FYDNTIFHRVIPNFVIQGGD-PT 73

Query: 78  GDGTGGESIYGLKFEDE-NFELKHERKGMLSMANAGPNTNGSQFFITTTRTSHLDGKHVV 136
           G G GG+SIYG  FEDE N ELKH   G+LSM+N GPNTN SQFFIT     HLDGKH +
Sbjct: 74  GTGKGGKSIYGEYFEDEINKELKHTGAGILSMSNNGPNTNSSQFFITLAPLPHLDGKHTI 133

Query: 137 FGRVIKGMGVVRSIEHVMTGDNDCPIADVTITDCG 171
           F RV K M  + +I  V T   + PI D+ I    
Sbjct: 134 FARVSKNMTCIENIASVQTTATNKPIFDLKILRTS 168

>d2fu0a1 b.62.1.1 (A:5-159) Putative cyclophilin PFE0505w {Plasmodium falciparum [TaxId: 5833]} Length = 155

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Putative cyclophilin PFE0505w
species: Plasmodium falciparum [TaxId: 5833]

 Score =  110 bits (276), Expect = 2e-30
 Identities = 70/154 (45%), Positives = 88/154 (57%), Gaps = 13/154 (8%)

Query: 18  GRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRVIKGFMIQGGDISA 77
           G I + ++     KT +NF                  +Y    FHRVIK FM+Q GD  +
Sbjct: 11  GDIHISLFYKECKKTVQNFSVHSING-----------YYNNCIFHRVIKHFMVQTGD-PS 58

Query: 78  GDGTGGESIYGLKFEDENFELKHERKG-MLSMANAGPNTNGSQFFITTTRTSHLDGKHVV 136
           GDGTGGESI+G +FEDE F+  +  K  M+SMAN GPNTNGSQFFITT     LD KH V
Sbjct: 59  GDGTGGESIWGNEFEDEFFDHLNHSKPFMVSMANCGPNTNGSQFFITTVPCPWLDFKHTV 118

Query: 137 FGRVIKGMGVVRSIEHVMTGDNDCPIADVTITDC 170
           FG+V +G  +V  IE V T   D P+ D+ I + 
Sbjct: 119 FGKVTQGSKIVLDIEKVRTDKRDKPLEDIKILNI 152

>d2a2na1 b.62.1.1 (A:483-646) Peptidylprolyl isomerase domain and WD repeat-containing protein 1, PPWD1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 164

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Peptidylprolyl isomerase domain and WD repeat-containing protein 1, PPWD1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  110 bits (275), Expect = 3e-30
 Identities = 69/168 (41%), Positives = 86/168 (51%), Gaps = 12/168 (7%)

Query: 4   PRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHR 63
           P+   D +I     G I  +++    PKT ENF                  +Y G  FHR
Sbjct: 5   PKRVSDSAIIHTSMGDIHTKLFPVECPKTVENFCVHSRN-----------GYYNGHTFHR 53

Query: 64  VIKGFMIQGGDISAGDGTGGESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFFIT 123
           +IKGFMIQ GD +     G     G   ++ +  L+H+R   LSMANAG NTNGSQFFIT
Sbjct: 54  IIKGFMIQTGDPTGTGMGGESIWGGEFEDEFHSTLRHDRPYTLSMANAGSNTNGSQFFIT 113

Query: 124 TTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGD-NDCPIADVTITDC 170
              T  LD KH VFGRV KGM VV+ I +V      D P  DV+I + 
Sbjct: 114 VVPTPWLDNKHTVFGRVTKGMEVVQRISNVKVNPKTDKPYEDVSIINI 161

>d1v9ta_ b.62.1.1 (A:) Peptidyl-prolyl cis-trans isomerase A, PpiA {Escherichia coli [TaxId: 562]} Length = 166

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Peptidyl-prolyl cis-trans isomerase A, PpiA
species: Escherichia coli [TaxId: 562]

 Score = 98.5 bits (244), Expect = 1e-25
 Identities = 50/182 (27%), Positives = 69/182 (37%), Gaps = 29/182 (15%)

Query: 3   RPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFH 62
            P   L  S G      I +E+     P + +NF                   Y    FH
Sbjct: 4   DPHVLLTTSAG-----NIELELDKQKAPVSVQNFVDYVNSG-----------FYNNTTFH 47

Query: 63  RVIKGFMIQGGDISAGDGTGGESIYGLKFEDENFELKHERKGMLSMA-NAGPNTNGSQFF 121
           RVI GFMIQGG  +        +      ++E        +G ++MA  A  ++  SQFF
Sbjct: 48  RVIPGFMIQGGGFTEQMQQKKPNPP---IKNEADNGLRNTRGTIAMARTADKDSATSQFF 104

Query: 122 ITTTRTSHLD-----GKHVVFGRVIKGMGVVRSIEHVMTGD----NDCPIADVTITDCGE 172
           I     + LD       + VFG+V+KGM V   I  V T D     + P   V I     
Sbjct: 105 INVADNAFLDHGQRDFGYAVFGKVVKGMDVADKISQVPTHDVGPYQNVPSKPVVILSATV 164

Query: 173 IP 174
           +P
Sbjct: 165 LP 166

>d1lopa_ b.62.1.1 (A:) Peptidyl-prolyl cis-trans isomerase A, PpiA {Escherichia coli [TaxId: 562]} Length = 164

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Peptidyl-prolyl cis-trans isomerase A, PpiA
species: Escherichia coli [TaxId: 562]

 Score = 98.0 bits (243), Expect = 1e-25
 Identities = 45/165 (27%), Positives = 65/165 (39%), Gaps = 25/165 (15%)

Query: 18  GRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRVIKGFMIQGGDISA 77
           G I+++ ++D  P+T +NF   C               Y    FHRVI GFMIQ      
Sbjct: 9   GDIVIKTFDDKAPETVKNFLDYCR-----------EGFYNNTIFHRVINGFMIQ--GGGF 55

Query: 78  GDGTGGESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFFITT--------TRTSH 129
             G   ++       + N  LK+ R  +       P++  +QFFI          +  S 
Sbjct: 56  EPGMKQKATKEPIKNEANNGLKNTRGTLAMARTQAPHSATAQFFINVVDNDFLNFSGESL 115

Query: 130 LDGKHVVFGRVIKGMGVVRSIEHVMTGDN----DCPIADVTITDC 170
               + VF  V+ GM  V  I+ V TG +    D P  DV I   
Sbjct: 116 QGWGYCVFAEVVDGMDEVDKIKGVATGRSGMHQDVPKEDVIIESV 160

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} Length = 169

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 61.2 bits (147), Expect = 5e-12
 Identities = 28/89 (31%), Positives = 47/89 (52%), Gaps = 2/89 (2%)

Query: 188 GDSYPDWPADLDQTPNELSWWMNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWE 247
           GDS+PD+P D D    ++   +   + +K  GN  +K Q+++MA++KY K LRY  +   
Sbjct: 3   GDSHPDFPEDADVDLKDVDKILLISEDLKNIGNTFFKSQNWEMAIKKYTKVLRY--VEGS 60

Query: 248 KEGIDEGKSSSLRKTKSQIFTNSSACKLK 276
           +   ++   + L+        N  ACKLK
Sbjct: 61  RAAAEDADGAKLQPVALSCVLNIGACKLK 89

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 170

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.3 bits (98), Expect = 2e-05
 Identities = 17/61 (27%), Positives = 29/61 (47%), Gaps = 6/61 (9%)

Query: 206 SWWMN------AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSL 259
           SW MN          +K  G  ++K+  YK AL +Y+K + +L+        +  K+ +L
Sbjct: 1   SWEMNSEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQAL 60

Query: 260 R 260
           R
Sbjct: 61  R 61

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} Length = 168

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

 Score = 41.1 bits (95), Expect = 5e-05
 Identities = 17/76 (22%), Positives = 30/76 (39%), Gaps = 9/76 (11%)

Query: 206 SWWMN------AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSL 259
           SW M+          +K  G  ++K   Y  A+ +Y K + +      + G+ E +S + 
Sbjct: 3   SWEMDTKEKLEQAAIVKEKGTVYFKGGKYVQAVIQYGKIVSW---LEMEYGLSEKESKAS 59

Query: 260 RKTKSQIFTNSSACKL 275
                  F N + C L
Sbjct: 60  ESFLLAAFLNLAMCYL 75

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} Length = 153

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

 Score = 39.6 bits (91), Expect = 1e-04
 Identities = 17/70 (24%), Positives = 30/70 (42%), Gaps = 2/70 (2%)

Query: 209 MNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFT 268
           + +   IK  GNE +KK +   A+ KY++AL +     E +  D+      +  +     
Sbjct: 14  VQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWD--DQILLDKKKNIEISCNL 71

Query: 269 NSSACKLKLG 278
           N + C  K  
Sbjct: 72  NLATCYNKNK 81

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.3 bits (90), Expect = 5e-04
 Identities = 11/89 (12%), Positives = 25/89 (28%), Gaps = 18/89 (20%)

Query: 219 GNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLG 278
            +  Y+  D++ A R   +  R                       + +    S+   +  
Sbjct: 6   AHREYQAGDFEAAERHCMQLWR------------------QEPDNTGVLLLLSSIHFQCR 47

Query: 279 DLKGALLDTEFAMRDGDDNVKALFRQGQV 307
            L  +   +  A++      +A    G V
Sbjct: 48  RLDRSAHFSTLAIKQNPLLAEAYSNLGNV 76

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 201

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 36.5 bits (83), Expect = 0.002
 Identities = 14/96 (14%), Positives = 29/96 (30%), Gaps = 16/96 (16%)

Query: 213 DSIKVFGNEHYKKQDYKMALRKYRKALR----------------YLDICWEKEGIDEGKS 256
             +K  GN  +  + Y  A   Y +A+                       E+   D  ++
Sbjct: 5   QELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRA 64

Query: 257 SSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMR 292
             L     +       C+L++     A+ + + A  
Sbjct: 65  LELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYS 100

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	312
d2igva1	172	Cyclophilin (eukaryotic) {Caenorhabditis elegans,	100.0
d1ihga2	195	Cyclophilin 40 isomerase domain {Cow (Bos taurus)	100.0
d1a33a_	174	Cyclophilin (eukaryotic) {Nematode (Brugia malayi)	100.0
d1qnga_	170	Cyclophilin (eukaryotic) {Plasmodium falciparum [T	100.0
d2z6wa1	164	Mitochondrial peptidyl-prolyl cis-trans isomerase,	100.0
d2r99a1	161	Mitochondrial peptidyl-prolyl cis-trans isomerase,	100.0
d1qoia_	173	Cyclophilin (eukaryotic) {Human (Homo sapiens), U4	100.0
d2rmca_	182	Cyclophilin (eukaryotic) {Mouse (Mus musculus), va	100.0
d2cfea1	162	Cyclophilin-like allergen Mal s 6 {Malassezia symp	100.0
d1h0pa_	182	Cyclophilin (eukaryotic) {Caenorhabditis elegans,	100.0
d1xo7a_	166	Cyclophilin (eukaryotic) {Trypanosoma cruzi [TaxId	100.0
d1z81a1	186	Cyclophilin (eukaryotic) {Plasmodium yoelii [TaxId	100.0
d2ok3a1	159	Cyclophilin-like protein PPIL3B {Human (Homo sapie	100.0
d2c3ba1	171	Cyclophilin (eukaryotic) {Aspergillus fumigatus [T	100.0
d1zkca1	178	Peptidyl-prolyl cis-trans isomerase-like 2, Cyclop	100.0
d1xwna1	166	Peptidyl-prolyl cis-trans isomerase-like 1, PPIL1	100.0
d2fu0a1	155	Putative cyclophilin PFE0505w {Plasmodium falcipar	100.0
d1v9ta_	166	Peptidyl-prolyl cis-trans isomerase A, PpiA {Esche	100.0
d2b71a1	169	Cyclophilin-like protein PY00693 {Plasmodium yoeli	100.0
d2a2na1	164	Peptidylprolyl isomerase domain and WD repeat-cont	100.0
d1w74a_	171	Peptidyl-prolyl cis-trans isomerase A, PpiA {Mycob	100.0
d1lopa_	164	Peptidyl-prolyl cis-trans isomerase A, PpiA {Esche	100.0
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	99.8
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	99.77
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	99.76
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	99.72
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	99.62
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.62
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	99.59
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.52
d1tjca_	95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	99.37
d2hr2a1	156	Hypothetical protein CT2138 {Chlorobium tepidum [T	99.25
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.24
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	99.16
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	99.13
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.05
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	98.99
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	98.99
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	98.95
d2ff4a2	179	Probable regulatory protein EmbR, middle domain {M	98.91
d1zu2a1	145	Mitochondrial import receptor subunit tom20-3 {Tha	98.9
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	98.9
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	98.86
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	98.85
d1nzna_	122	Mitochondria fission protein Fis1 {Human (Homo sap	98.84
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	98.84
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	98.83
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	98.83
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	98.76
d2h6fa1	315	Protein farnesyltransferase alpha-subunit {Human (	98.74
d2h6fa1	315	Protein farnesyltransferase alpha-subunit {Human (	98.71
d1nzna_	122	Mitochondria fission protein Fis1 {Human (Homo sap	98.7
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	98.64
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	98.59
d1zu2a1	145	Mitochondrial import receptor subunit tom20-3 {Tha	98.46
d2hr2a1	156	Hypothetical protein CT2138 {Chlorobium tepidum [T	98.37
d1zbpa1	264	Hypothetical protein VPA1032 {Vibrio parahaemolyti	98.28
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	98.23
d2pqrb1	124	Mitochondria fission protein Fis1 {Baker's yeast (	98.22
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	98.17
d1ya0a1	497	SMG-7 {Human (Homo sapiens) [TaxId: 9606]}	98.11
d1qqea_	290	Vesicular transport protein sec17 {Baker's yeast (	98.1
d1dcea1	334	Rab geranylgeranyltransferase alpha-subunit, N-ter	97.82
d1ya0a1	497	SMG-7 {Human (Homo sapiens) [TaxId: 9606]}	97.79
d1qqea_	290	Vesicular transport protein sec17 {Baker's yeast (	97.78
d1hz4a_	366	Transcription factor MalT domain III {Escherichia	97.61
d2ff4a2	179	Probable regulatory protein EmbR, middle domain {M	97.56
d1dcea1	334	Rab geranylgeranyltransferase alpha-subunit, N-ter	97.4
d1hz4a_	366	Transcription factor MalT domain III {Escherichia	96.94
d1tjca_	95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	96.89
d1ouva_	265	Cysteine rich protein C (HcpC) {Helicobacter pylor	96.52
d1wfda_	93	Hypothetical protein 1500032H18Rik {Mouse (Mus mus	95.71
d1wr0a1	77	Vacuolar sorting protein 4b (VPS4B, SKD1 protein)	95.06
d1klxa_	133	Cysteine rich protein B (HcpB) {Helicobacter pylor	93.92
d2onda1	308	Cleavage stimulation factor 77 kDa subunit CSTF3 {	93.37
d1ouva_	265	Cysteine rich protein C (HcpC) {Helicobacter pylor	93.33
d2onda1	308	Cleavage stimulation factor 77 kDa subunit CSTF3 {	93.25
d1zbpa1	264	Hypothetical protein VPA1032 {Vibrio parahaemolyti	92.8
d2crba1	83	Nuclear receptor binding factor 2, NRBF2, N-termin	92.54
d1klxa_	133	Cysteine rich protein B (HcpB) {Helicobacter pylor	89.11

>d2igva1 b.62.1.1 (A:1-172) Cyclophilin (eukaryotic) {Caenorhabditis elegans, isoform 3 [TaxId: 6239]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin (eukaryotic)
species: Caenorhabditis elegans, isoform 3 [TaxId: 6239]

Probab=100.00  E-value=2.9e-48  Score=319.91  Aligned_cols=172  Identities=60%  Similarity=1.081  Sum_probs=160.7

Q ss_pred             CCCCeEEEEEEECCeeeeEEEEEEeCCCCchhHHhHHHHhhCCCCCCCCCCCCceecCCEEEEeecCCeEEeCCCCCCCC
Q 021445            1 MARPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRVIKGFMIQGGDISAGDG   80 (312)
Q Consensus         1 ~~~~~v~~d~~~~~~~~G~i~ieL~~~~aP~~~~nF~~l~~~~~~~~~~~~~~~~Y~g~~~~rv~~~~~iq~G~~~~~~~   80 (312)
                      |+||+|||||+|+++++|+|+|+||.+.||.||+||++||+++.+. ..+++.+||+++.||||+|++++|+|++..+++
T Consensus         1 ~~~~~v~~Di~i~~~~~G~i~ieL~~~~aP~tv~nF~~L~~~~~~~-~~~~k~~~y~~~~f~rv~~~~~i~~G~~~~~~~   79 (172)
T d2igva1           1 MSRSKVFFDITIGGKASGRIVMELYDDVVPKTAGNFRALCTGENGI-GKSGKPLHFKGSKFHRIIPNFMIQGGDFTRGNG   79 (172)
T ss_dssp             CCCCEEEEEEEETTEEEEEEEEEECTTTCHHHHHHHHHHHHTTTCB-CTTSSBSCCTTCBCCEEETTTEEEECCTTTSSS
T ss_pred             CCCCEEEEEEEECCEeccEEEEEEcCCCCcHHHHHHHHHHhccccc-cccCcccccCCcceeEEEecceEEcCCccCCCC
Confidence            9999999999999999999999999999999999999999987543 235677799999999999999999999988888


Q ss_pred             CCCCcccCCCCCCCcccccCCCcceEEeecCCCCCCCceEEEecCCCCCCCCCCceEEEEEeChHHHHHHhcccCCCCCC
Q 021445           81 TGGESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFFITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDC  160 (312)
Q Consensus        81 ~~~~~~~~~~~~~e~~~~~~~~~G~l~~~~~~~~~~~sqF~I~~~~~~~ld~~~~vfG~V~~G~~vl~~i~~~~~~~~~~  160 (312)
                      +++..+++..+++|.....|+.+|+|+|++.+|++++|||||++.+.|+||++|+|||+|++||++|++|+..+++ +++
T Consensus        80 ~~~~~~~~~~~~~e~~~~~~~~~G~lsma~~~~~~~~sqFfIt~~~~~~ld~~~~vFG~Vv~Gmdvl~~I~~~~~~-~g~  158 (172)
T d2igva1          80 TGGESIYGEKFPDENFKEKHTGPGVLSMANAGPNTNGSQFFLCTVKTEWLDGKHVVFGRVVEGLDVVKAVESNGSQ-SGK  158 (172)
T ss_dssp             SCCCBTTBSCBCCCCCCSCCCSTTEEEECCSSTTCBSSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTTCCT-TSC
T ss_pred             CCCcccCCCccCccccccccCCCcEEEEeecCCCCcCceeEeeecCCcccCCceeEEEEEeccHHHHHHHHcCCCC-CCC
Confidence            8888899999999998899999999999999999999999999999999999999999999999999999998765 489


Q ss_pred             cccceEEeeeeeeC
Q 021445          161 PIADVTITDCGEIP  174 (312)
Q Consensus       161 P~~~i~I~~~g~l~  174 (312)
                      |.++|.|++||+|+
T Consensus       159 P~~~i~I~~cG~l~  172 (172)
T d2igva1         159 PVKDCMIADCGQLK  172 (172)
T ss_dssp             CSSCEEEEEEEEEC
T ss_pred             CCCCeEEEeccccC
Confidence            99999999999984

>d1ihga2 b.62.1.1 (A:2-196) Cyclophilin 40 isomerase domain {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin 40 isomerase domain
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=5.1e-47  Score=318.30  Aligned_cols=179  Identities=66%  Similarity=1.118  Sum_probs=167.3

Q ss_pred             CCCeEEEEEEECCeeeeEEEEEEeCCCCchhHHhHHHHhhCCCCCCCCCCCCceecCCEEEEeecCCeEEeCCCCCCCCC
Q 021445            2 ARPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRVIKGFMIQGGDISAGDGT   81 (312)
Q Consensus         2 ~~~~v~~d~~~~~~~~G~i~ieL~~~~aP~~~~nF~~l~~~~~~~~~~~~~~~~Y~g~~~~rv~~~~~iq~G~~~~~~~~   81 (312)
                      +||+|||||+|+++.+|+|+|+||.+.||++|+||++||+++.+.+...++.++|+|+.||||+|++++|+|+.....+.
T Consensus        13 ~np~v~~Di~i~~~~~G~I~IeL~~d~aP~tv~nF~~L~~~~~~~~~~~~~~~~y~g~~f~rv~~~~~i~~G~~~~~~~~   92 (195)
T d1ihga2          13 SNPRVFFDVDIGGERVGRIVLELFADIVPKTAENFRALCTGEKGIGPTTGKPLHFKGCPFHRIIKKFMIQGGDFSNQNGT   92 (195)
T ss_dssp             TSCEEEEEEEETTEEEEEEEEEECTTTCHHHHHHHHHHHHCTTCBCTTTSSBSCCTTCBEEEEETTTEEEECCTTTSSSS
T ss_pred             CCCEEEEEEEECCEeeeEEEEEECCCCChHHHHHHHHHhccccccccccCCccccCCceeeEEEcCceeecCCccCCCCC
Confidence            48999999999999999999999999999999999999999877666677778999999999999999999998877788


Q ss_pred             CCCcccCCCCCCCcccccCCCcceEEeecCCCCCCCceEEEecCCCCCCCCCCceEEEEEeChHHHHHHhcccCCCCCCc
Q 021445           82 GGESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFFITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCP  161 (312)
Q Consensus        82 ~~~~~~~~~~~~e~~~~~~~~~G~l~~~~~~~~~~~sqF~I~~~~~~~ld~~~~vfG~V~~G~~vl~~i~~~~~~~~~~P  161 (312)
                      ++...++..+.++.....|+.+|+|+|++.++++++|||||+|++.++||++|+|||||++||+||++|+.++++. ++|
T Consensus        93 ~~~~~~~~~~~~~~~~~~h~~~G~lsm~~~~~~s~~SqFfItl~~~~~LDg~ytVFG~Vv~Gmdvl~~I~~~~t~~-~~P  171 (195)
T d1ihga2          93 GGESIYGEKFEDENFHYKHDKEGLLSMANAGSNTNGSQFFITTVPTPHLDGKHVVFGQVIKGMGVAKILENVEVKG-EKP  171 (195)
T ss_dssp             CCCBTTBSCBCCCCCCBCCCSTTEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTSCEET-TEE
T ss_pred             CCccCCCCcccccccCcccCcceEEeeeecCCCCCCceeEeeccCCcccCCcceEEEEEecCHHHHHHHHcCCCCC-CCc
Confidence            8888888889999999999999999999999999999999999999999999999999999999999999998864 899


Q ss_pred             ccceEEeeeeeeCCCCCCCC
Q 021445          162 IADVTITDCGEIPEGADDGI  181 (312)
Q Consensus       162 ~~~i~I~~~g~l~~~~~~~~  181 (312)
                      .++|+|++||+|+++.++++
T Consensus       172 ~~~i~I~~cG~l~~~~~~~~  191 (195)
T d1ihga2         172 AKLCVIAECGELKEGDDWGI  191 (195)
T ss_dssp             SSCEEEEEEEEECTTCCCCC
T ss_pred             CCCeEEEECcccCCCCcCCC
Confidence            99999999999998887763

>d1a33a_ b.62.1.1 (A:) Cyclophilin (eukaryotic) {Nematode (Brugia malayi) [TaxId: 6279]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin (eukaryotic)
species: Nematode (Brugia malayi) [TaxId: 6279]

Probab=100.00  E-value=2.6e-46  Score=308.99  Aligned_cols=172  Identities=59%  Similarity=1.007  Sum_probs=162.2

Q ss_pred             CCCeEEEEEEECCeeeeEEEEEEeCCCCchhHHhHHHHhhCCCCCCCCCCCCceecCCEEEEeecCCeEEeCCCCCCCCC
Q 021445            2 ARPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRVIKGFMIQGGDISAGDGT   81 (312)
Q Consensus         2 ~~~~v~~d~~~~~~~~G~i~ieL~~~~aP~~~~nF~~l~~~~~~~~~~~~~~~~Y~g~~~~rv~~~~~iq~G~~~~~~~~   81 (312)
                      .|++|||||+++++.+|+|+|+||++.||++|+||++||+++.+.+..+++.++|+++.||||+|++++|+|+...+++.
T Consensus         2 ~~~~v~~di~i~~~~~G~I~ieL~~d~aP~tv~nF~~l~~~~~~~~~~~~k~~~Y~~~~f~Rv~~~~~iq~g~~~~~~~~   81 (174)
T d1a33a_           2 DRRRVFLDVTIDGNLAGRIVMELYNDIAPRTCNNFLMLCTGMAGTGKISGKPLHYKGSTFHRVIKNFMIQGGDFTKGDGT   81 (174)
T ss_dssp             CCEEEEEEEEETTEEEEEEEEEECTTTCHHHHHHHHHHHHCTTCBCTTTCSBCCCTTCBEEEEETTTEEEECCTTTSSSS
T ss_pred             CCCEEEEEEEECCEeceEEEEEECCCCChHHHHHHHHHHhcccCCCcccCccceeCCceeeEEEeCCEEeeCCCCCCCCC
Confidence            48999999999999999999999999999999999999999877776677888999999999999999999999877788


Q ss_pred             CCCcccCCCCCCCcccccCCCcceEEeecCCCCCCCceEEEecCCCCCCCCCCceEEEEEeChHHHHHHhcccCCCCCCc
Q 021445           82 GGESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFFITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCP  161 (312)
Q Consensus        82 ~~~~~~~~~~~~e~~~~~~~~~G~l~~~~~~~~~~~sqF~I~~~~~~~ld~~~~vfG~V~~G~~vl~~i~~~~~~~~~~P  161 (312)
                      +..+.++....++....+|+++|+|+|++.+|++++|||||++++.|+||++|+|||+|++||+||++|+.++++.+++|
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~s~~sqFfI~~~~~p~ld~~~~vFG~VveG~dvl~~I~~~~t~~~~~P  161 (174)
T d1a33a_          82 GGESIYGGMFDDEEFVMKHDEPFVVSMANKGPNTNGSQFFITTTPAPHLNNIHVVFGKVVSGQEVVTKIEYLKTNSKNRP  161 (174)
T ss_dssp             CCCCTTSSCBCCCCSCSCCCSTTEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTSCBCTTSCB
T ss_pred             CCCCccCccccccccccccCcceeeeeeccCCCCCCcccccccCCcccccccceeEEEEechHHHHHHHHhCCcCCCCCC
Confidence            77777777777788899999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccceEEeeeeee
Q 021445          162 IADVTITDCGEI  173 (312)
Q Consensus       162 ~~~i~I~~~g~l  173 (312)
                      .++|.|.+||+|
T Consensus       162 ~~~i~I~~cGel  173 (174)
T d1a33a_         162 LADVVILNCGEL  173 (174)
T ss_dssp             SSCEEEEEEEEC
T ss_pred             CCCEEEEeeEEE
Confidence            999999999987

>d1qnga_ b.62.1.1 (A:) Cyclophilin (eukaryotic) {Plasmodium falciparum [TaxId: 5833]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin (eukaryotic)
species: Plasmodium falciparum [TaxId: 5833]

Probab=100.00  E-value=1.5e-46  Score=309.11  Aligned_cols=169  Identities=59%  Similarity=0.966  Sum_probs=156.5

Q ss_pred             CCCeEEEEEEECCeeeeEEEEEEeCCCCchhHHhHHHHhhCCCCCCCCCCCCceecCCEEEEeecCCeEEeCCCCCCCCC
Q 021445            2 ARPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRVIKGFMIQGGDISAGDGT   81 (312)
Q Consensus         2 ~~~~v~~d~~~~~~~~G~i~ieL~~~~aP~~~~nF~~l~~~~~~~~~~~~~~~~Y~g~~~~rv~~~~~iq~G~~~~~~~~   81 (312)
                      +||+|||||+|+++++|+|+|+||++.||++|+||++||++....  ++.+.+||+|+.||||++++++|+|+...+++.
T Consensus         2 ~r~~vy~Di~i~~t~~G~ivIeL~~~~aP~tv~nF~~l~~~~~~~--~~~~~~~y~g~~~~rv~~~~~iq~g~~~~~~~~   79 (170)
T d1qnga_           2 KRSKVFFDISIDNSNAGRIIFELFSDITPRTCENFRALCTGEKIG--SRGKNLHYKNSIFHRIIPQFMCQGGDITNGNGS   79 (170)
T ss_dssp             CSCEEEEEEEESSSEEEEEEEEECTTTCHHHHHHHHHHHHTCEEC--TTSSEECCTTCBCCEEETTTEEEECCTTTSSSS
T ss_pred             CCCEEEEEEEECCEEccEEEEEECCCCChHHHHHHHhhhcccccc--ccCccCccCcccceEEEeCceEEecCccCCCCC
Confidence            699999999999999999999999999999999999999975322  234556899999999999999999999888888


Q ss_pred             CCCcccCCCCCCCcccccCCCcceEEeecCCCCCCCceEEEecCCCCCCCCCCceEEEEEeChHHHHHHhcccCCCCCCc
Q 021445           82 GGESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFFITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCP  161 (312)
Q Consensus        82 ~~~~~~~~~~~~e~~~~~~~~~G~l~~~~~~~~~~~sqF~I~~~~~~~ld~~~~vfG~V~~G~~vl~~i~~~~~~~~~~P  161 (312)
                      +....++..++++...+.|+.+|+|+|++.++++++|||||++++.|+||++|+|||+|++||++|++|++.+++. ++|
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~G~lsma~~~~~s~~sqFfIt~~~~~~Ld~~~~vFG~Vv~Gmdvl~~I~~~~~~~-g~P  158 (170)
T d1qnga_          80 GGESIYGRSFTDENFNMKHDQPGLLSMANAGPNTNSSQFFITLVPCPWLDGKHVVFGKVIEGMNVVREMEKEGAKS-GYV  158 (170)
T ss_dssp             CCCBTTBSCBCCCCCCSCCCSTTEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTTCCTT-CCC
T ss_pred             CCcccCCCccccccccccCCCCeEEEEeecCCCCccccceeccCCcccccccccEEeEEeccHHHHHHHHhcCCCC-cCC
Confidence            8888889999999999999999999999999999999999999999999999999999999999999999988765 899


Q ss_pred             ccceEEeeeeee
Q 021445          162 IADVTITDCGEI  173 (312)
Q Consensus       162 ~~~i~I~~~g~l  173 (312)
                      .++|+|++||+|
T Consensus       159 ~~~i~I~~CG~l  170 (170)
T d1qnga_         159 KRSVVITDCGEL  170 (170)
T ss_dssp             SSCEEEEEEEEC
T ss_pred             ccCEEEEeeEcC
Confidence            999999999986

>d2z6wa1 b.62.1.1 (A:2-165) Mitochondrial peptidyl-prolyl cis-trans isomerase, cyclophilin F {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Mitochondrial peptidyl-prolyl cis-trans isomerase, cyclophilin F
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.6e-46  Score=304.28  Aligned_cols=164  Identities=58%  Similarity=0.964  Sum_probs=153.4

Q ss_pred             CCCeEEEEEEECCeeeeEEEEEEeCCCCchhHHhHHHHhhCCCCCCCCCCCCceecCCEEEEeecCCeEEeCCCCCCCCC
Q 021445            2 ARPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRVIKGFMIQGGDISAGDGT   81 (312)
Q Consensus         2 ~~~~v~~d~~~~~~~~G~i~ieL~~~~aP~~~~nF~~l~~~~~~~~~~~~~~~~Y~g~~~~rv~~~~~iq~G~~~~~~~~   81 (312)
                      .||+|||||+++++++|+|+||||++.||++|+||++||+++++.        +|+|+.||||+|++++|+|++....+.
T Consensus         1 ~n~~v~~Di~i~~~~~G~i~ieL~~~~aP~tv~nF~~l~~~~~~~--------~Y~g~~f~rv~~~~~iq~g~~~~~~~~   72 (164)
T d2z6wa1           1 GNPLVYLDVDANGKPLGRVVLELKADVVPKTAENFRALCTGEKGF--------GYKGSTFHRVIPSFMCQAGDFTNHNGT   72 (164)
T ss_dssp             CCCEEEEEEEETTEEEEEEEEEECTTTCHHHHHHHHHHHHTTTSC--------CSTTCBEEEEETTTEEEECCTTTSSSS
T ss_pred             CCCeEEEEEEECCEeceEEEEEECCCcCcHHHHHHHHHHhcCCCc--------ccCCcEEEEecccceEecCCccCCCCC
Confidence            599999999999999999999999999999999999999876432        699999999999999999999877788


Q ss_pred             CCCcccCCCCCCCcccccCCCcceEEeecCCCCCCCceEEEecCCCCCCCCCCceEEEEEeChHHHHHHhcccCCCCCCc
Q 021445           82 GGESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFFITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCP  161 (312)
Q Consensus        82 ~~~~~~~~~~~~e~~~~~~~~~G~l~~~~~~~~~~~sqF~I~~~~~~~ld~~~~vfG~V~~G~~vl~~i~~~~~~~~~~P  161 (312)
                      ++...++..+.++.....|+.+|+|||++.++++++|||||++.+.++||++|+|||+|++||++|++|++++++. ++|
T Consensus        73 ~~~~~~~~~~~~~~~~~~~~~~G~lsma~~~~~s~~sqFfi~~~~~~~ldg~ytVFG~Vv~G~dvl~~I~~~~~~~-~~P  151 (164)
T d2z6wa1          73 GGKSIYGSRFPDENFTLKHVGPGVLSMANAGPNTNGSQFFICTIKTDWLDGKHVVFGHVIEGMDVVKKIESFGSKS-GRT  151 (164)
T ss_dssp             CCCBTTBSCBCCCCCCSCCCSTTEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHHTCCTT-SCC
T ss_pred             CCccccCCcCCccccccccCCccEEEEecCCCCCCCcceeccccCCCcccccceEEEEecccHHHHHHHHhCCCCC-CCC
Confidence            8888888888888888999999999999999999999999999999999999999999999999999999998765 899


Q ss_pred             ccceEEeeeeeeC
Q 021445          162 IADVTITDCGEIP  174 (312)
Q Consensus       162 ~~~i~I~~~g~l~  174 (312)
                      .++|+|.+||+|.
T Consensus       152 ~~~i~I~~cG~l~  164 (164)
T d2z6wa1         152 SKKIVITDCGQLS  164 (164)
T ss_dssp             SSCEEEEEEEECC
T ss_pred             CCCEEEEeCeecC
Confidence            9999999999983

>d2r99a1 b.62.1.1 (A:139-299) Mitochondrial peptidyl-prolyl cis-trans isomerase, cyclophilin F {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Mitochondrial peptidyl-prolyl cis-trans isomerase, cyclophilin F
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=6.2e-46  Score=302.36  Aligned_cols=161  Identities=57%  Similarity=0.976  Sum_probs=149.8

Q ss_pred             CCeEEEEEEECCeeeeEEEEEEeCCCCchhHHhHHHHhhCCCCCCCCCCCCceecCCEEEEeecCCeEEeCCCCCCCCCC
Q 021445            3 RPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRVIKGFMIQGGDISAGDGTG   82 (312)
Q Consensus         3 ~~~v~~d~~~~~~~~G~i~ieL~~~~aP~~~~nF~~l~~~~~~~~~~~~~~~~Y~g~~~~rv~~~~~iq~G~~~~~~~~~   82 (312)
                      ||+|||||+++++.+|+|+|+||.+.||+||+||++||+..++        ++|+|+.||||+|++++|+|++....+.+
T Consensus         1 np~vy~di~i~~~~~G~i~ieL~~~~aP~tv~nF~~L~~~~~~--------~~Y~g~~f~Rv~~~~~iq~G~~~~~~~~~   72 (161)
T d2r99a1           1 NPQVYMDIKIGNKPAGRIQMLLRSDVVPMTAENFRCLCTHEKG--------FGFKGSSFHRIIPQFMCQGGDFTNHNGTG   72 (161)
T ss_dssp             CCEEEEEEEETTEEEEEEEEEECTTTCHHHHHHHHHHHHTTTS--------CCSTTCBEEEEETTTEEEECCTTTSSSSC
T ss_pred             CCEEEEEEEECCEeceEEEEEEcCCCCcHHHHHHHHhhhhccc--------cccCCcEEEEEEEeeeEEeeeccCCCCCC
Confidence            8999999999999999999999999999999999999987532        27999999999999999999998777777


Q ss_pred             CCcccCCCCCCCcccccCCCcceEEeecCCCCCCCceEEEecCCCCCCCCCCceEEEEEeChHHHHHHhcccCCCCCCcc
Q 021445           83 GESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFFITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPI  162 (312)
Q Consensus        83 ~~~~~~~~~~~e~~~~~~~~~G~l~~~~~~~~~~~sqF~I~~~~~~~ld~~~~vfG~V~~G~~vl~~i~~~~~~~~~~P~  162 (312)
                      ..+.++..+.++....+|+.+|+|+|++.+|++++|||||++++.++||++|+|||||++||++|++|+..++ .+++|.
T Consensus        73 ~~~~~~~~~~~~~~~~~~~~~G~ls~~~~~~~s~~sqFfI~~~~~~~Ldg~~tvFG~Vv~G~dvl~~I~~~~~-~~~~P~  151 (161)
T d2r99a1          73 GKSIYGKKFDDENFILKHTGPGLLSMANSGPNTNGSQFFLTCDKTDWLDGKHVVFGEVTEGLDVLRQIEAQGS-KDGKPK  151 (161)
T ss_dssp             CCBTTBSCBCCCCCCSCCCSSSEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTTCC-TTCCCS
T ss_pred             CccccCccccccccccccccceeeeecccCCCCcCcceEeccCCccccCCcceEEEEEeehHHHHHHHHccCC-CCCcCC
Confidence            8888888888888899999999999999999999999999999999999999999999999999999988755 459999


Q ss_pred             cceEEeeeee
Q 021445          163 ADVTITDCGE  172 (312)
Q Consensus       163 ~~i~I~~~g~  172 (312)
                      ++|.|++||+
T Consensus       152 ~~i~I~~CGe  161 (161)
T d2r99a1         152 QKVIIADCGE  161 (161)
T ss_dssp             SCEEEEEEEE
T ss_pred             CCEEEEeCCC
Confidence            9999999995

>d1qoia_ b.62.1.1 (A:) Cyclophilin (eukaryotic) {Human (Homo sapiens), U4/U6 snRNP-specific cyclophilin snucyp-20 [TaxId: 9606]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin (eukaryotic)
species: Human (Homo sapiens), U4/U6 snRNP-specific cyclophilin snucyp-20 [TaxId: 9606]

Probab=100.00  E-value=3.2e-45  Score=302.20  Aligned_cols=169  Identities=58%  Similarity=0.988  Sum_probs=151.7

Q ss_pred             CCCeEEEEEEECCeeeeEEEEEEeCCCCchhHHhHHHHhhCCCCCCCCCCCCceecCCEEEEeecCCeEEeCCCCCCCCC
Q 021445            2 ARPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRVIKGFMIQGGDISAGDGT   81 (312)
Q Consensus         2 ~~~~v~~d~~~~~~~~G~i~ieL~~~~aP~~~~nF~~l~~~~~~~~~~~~~~~~Y~g~~~~rv~~~~~iq~G~~~~~~~~   81 (312)
                      .||+|||||+++++.+|+|+|+||.+.||++|+||++||+.+...   .++...|+++.|||++|++++|+|+...+.+.
T Consensus         5 ~np~v~~di~i~~~~~G~i~ieL~~~~aP~tv~nF~~L~~~~~~~---~~~~~~y~~~~f~rv~~~~~~q~G~~~~~~~~   81 (173)
T d1qoia_           5 VNPVVFFDVSIGGQEVGRMKIELFADVVPKTAENFRQFCTGEFRK---DGVPIGYKGSTFHRVIKDFMIQGGDFVNGDGT   81 (173)
T ss_dssp             CCCEEEEEEEETTEEEEEEEEEECTTTCHHHHHHHHHHHHSCCEE---TTEECSSTTCBCCEEETTTEEEECCTTTSSSC
T ss_pred             CCCEEEEEEEECCEeCeEEEEEEcCCCCcHHHHHHHHhhcccccc---cCCCCCcCCcccceeccceeeccCCcccCCcc
Confidence            489999999999999999999999999999999999999987100   00111299999999999999999998776666


Q ss_pred             CCCcccCCCCCCCcccccCCCcceEEeecCCCCCCCceEEEecCCCCCCCCCCceEEEEEeChHHHHHHhcccCCCCCCc
Q 021445           82 GGESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFFITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCP  161 (312)
Q Consensus        82 ~~~~~~~~~~~~e~~~~~~~~~G~l~~~~~~~~~~~sqF~I~~~~~~~ld~~~~vfG~V~~G~~vl~~i~~~~~~~~~~P  161 (312)
                      .....++.++.++.....|+.+|+|+|++.++++++|||||++++.++||++|+|||+|++||++|++|+.++++.+++|
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~G~l~ma~~~~~s~~sqFfI~~~~~~~ldg~~tvFG~Vi~G~dvl~~I~~~~t~~~~~P  161 (173)
T d1qoia_          82 GVASIYRGPFADENFKLRHSAPGLLSMANSGPSTNGCQFFITCSKCDWLDGKHVVFGKIIDGLLVMRKIENVPTGPNNKP  161 (173)
T ss_dssp             CCCCTTSSCBCCCCCCSCCCSTTEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTSCBCGGGCB
T ss_pred             eeecccCCcccccccccccCCCcEEEeeecCCCCCCceeeeeccCCccCCcceeEEEEEechHHHHHHHHhCCcCCCCcC
Confidence            66666777788888888899999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccceEEeeeeee
Q 021445          162 IADVTITDCGEI  173 (312)
Q Consensus       162 ~~~i~I~~~g~l  173 (312)
                      .++|+|.+||+|
T Consensus       162 ~~~i~I~~cGel  173 (173)
T d1qoia_         162 KLPVVISQCGEM  173 (173)
T ss_dssp             SSCEEEEEEEEC
T ss_pred             CCCEEEEcccCC
Confidence            999999999986

>d2rmca_ b.62.1.1 (A:) Cyclophilin (eukaryotic) {Mouse (Mus musculus), variant C [TaxId: 10090]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin (eukaryotic)
species: Mouse (Mus musculus), variant C [TaxId: 10090]

Probab=100.00  E-value=6.2e-45  Score=302.43  Aligned_cols=163  Identities=60%  Similarity=0.967  Sum_probs=154.5

Q ss_pred             CeEEEEEEECCeeeeEEEEEEeCCCCchhHHhHHHHhhCCCCCCCCCCCCceecCCEEEEeecCCeEEeCCCCCCCCCCC
Q 021445            4 PRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRVIKGFMIQGGDISAGDGTGG   83 (312)
Q Consensus         4 ~~v~~d~~~~~~~~G~i~ieL~~~~aP~~~~nF~~l~~~~~~~~~~~~~~~~Y~g~~~~rv~~~~~iq~G~~~~~~~~~~   83 (312)
                      .+|||||+++++++|+|+|+||.+.||++|+||++||++++..        +|+|+.|||++|++++|+|++...++.++
T Consensus         8 ~~vy~di~i~~~~~G~ivieL~~d~aP~tv~nF~~l~~~~k~~--------~Y~g~~f~rv~~~~~iq~G~~~~~~~~~~   79 (182)
T d2rmca_           8 DKVFFDVRIGDKDVGRIVIGLFGNVVPKTVENFVALATGEKGY--------GYKGSIFHRVIKDFMIQGGDFTARDGTGG   79 (182)
T ss_dssp             EEEEEEEEETTEEEEEEEEEECTTTSHHHHHHHHHHHHTTTSC--------SSTTCBEEEEETTTEEEECCCSSSSSSCC
T ss_pred             CeEEEEEEECCEECcEEEEEEcCCCCcHHHHHHHHhhhcCCCc--------cccCceeeeeecCceEEcCCCCCCCCCCC
Confidence            5799999999999999999999999999999999999886432        69999999999999999999987778888


Q ss_pred             CcccCCCCCCCcccccCCCcceEEeecCCCCCCCceEEEecCCCCCCCCCCceEEEEEeChHHHHHHhcccCCCCCCccc
Q 021445           84 ESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFFITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIA  163 (312)
Q Consensus        84 ~~~~~~~~~~e~~~~~~~~~G~l~~~~~~~~~~~sqF~I~~~~~~~ld~~~~vfG~V~~G~~vl~~i~~~~~~~~~~P~~  163 (312)
                      .++++..+++++....|+.+|+|+|++.++++++|||||++++.++||++|+|||+|++||++|++|+..+++.+++|.+
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~G~lsma~~~~~s~~sqFfI~~~~~~~ld~~~~vFG~Vi~G~dvl~~I~~~~~~~~~~P~~  159 (182)
T d2rmca_          80 MSIYGETFPDENFKLKHYGIGWVSMANAGPDTNGSQFFITLTKPTWLDGKHVVFGKVLDGMTVVHSIELQATDGHDRPLT  159 (182)
T ss_dssp             CBTTBSCBCCCCCCSCCCSTTEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTSCBCTTSCBSS
T ss_pred             CCCcCCcccccccccccCCCccEehhhcCCCccCccccccccCCchhcccceEEEEEechHHHHHHHHhCCcCCCCcCCC
Confidence            88889889999989999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ceEEeeeeeeC
Q 021445          164 DVTITDCGEIP  174 (312)
Q Consensus       164 ~i~I~~~g~l~  174 (312)
                      +|+|.+||+++
T Consensus       160 ~v~I~~~g~l~  170 (182)
T d2rmca_         160 DCTIVNSGKID  170 (182)
T ss_dssp             CEEEEEEEEEE
T ss_pred             CeEEEEeeEEe
Confidence            99999999996

>d2cfea1 b.62.1.1 (A:1-162) Cyclophilin-like allergen Mal s 6 {Malassezia sympodialis [TaxId: 76777]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin-like allergen Mal s 6
species: Malassezia sympodialis [TaxId: 76777]

Probab=100.00  E-value=7.2e-45  Score=296.47  Aligned_cols=159  Identities=61%  Similarity=1.014  Sum_probs=149.1

Q ss_pred             eEEEEEEECCeeeeEEEEEEeCCCCchhHHhHHHHhhCCCCCCCCCCCCceecCCEEEEeecCCeEEeCCCCCCCCCCCC
Q 021445            5 RCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRVIKGFMIQGGDISAGDGTGGE   84 (312)
Q Consensus         5 ~v~~d~~~~~~~~G~i~ieL~~~~aP~~~~nF~~l~~~~~~~~~~~~~~~~Y~g~~~~rv~~~~~iq~G~~~~~~~~~~~   84 (312)
                      .|||||+++++++|+|+||||++.||++|+||++||+++.++        ||+|+.||||+|++++|+|++..+++.++.
T Consensus         3 ~V~fDi~i~~~~~G~i~ieL~~~~aP~tv~nF~~L~~~~~~~--------~Y~g~~f~rv~~~~~iq~G~~~~~~~~~~~   74 (162)
T d2cfea1           3 NVFFDITKNGAPLGTIKFKLFDDVVPKTAANFRALCTGEKGF--------GYAGSHFHRVIPDFMLQGGDFTAGNGTGGK   74 (162)
T ss_dssp             CEEEEEEETTEEEEEEEEEECTTTCHHHHHHHHHHHHTTTSC--------CSTTCBCCEEETTTEEEECCTTTSSSSCCC
T ss_pred             eEEEEEEECCEEeeEEEEEEcCCCChHHHHHHHHHHhhccCC--------ccCCCEEEEEEecceEecCCCCCCCCCCCc
Confidence            589999999999999999999999999999999999998432        599999999999999999999888888888


Q ss_pred             cccCCCCCCCcccccCCCcceEEeecCCCCCCCceEEEecCCCCCCCCCCceEEEEEeChHHHHHHhcccCCCCCCcccc
Q 021445           85 SIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFFITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIAD  164 (312)
Q Consensus        85 ~~~~~~~~~e~~~~~~~~~G~l~~~~~~~~~~~sqF~I~~~~~~~ld~~~~vfG~V~~G~~vl~~i~~~~~~~~~~P~~~  164 (312)
                      +.++..+.+|+..++|+++|+|+|++.++++++|||||++++.++||++|+|||||++||+||++|+..++ .+++|.++
T Consensus        75 ~~~~~~~~~e~~~~~h~~~G~vsm~~~~~~s~~sqF~I~~~~~~~ld~~~~vFG~Vi~G~dvl~~I~~~~~-~~~~P~~~  153 (162)
T d2cfea1          75 SIYGAKFADENFQLKHNKPGLLSMANAGPNTNGSQFFITTVVTSWLDGKHVVFGEVIDGMNVVKAIEAEGS-GSGKPRSR  153 (162)
T ss_dssp             BTTBSCBCCCCCCSCCCSTTEEEECCSSTTCBSSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTTCC-TTSCCSSC
T ss_pred             ccCCCccccccCCCCCCCceEEEEeecCCCCCCcceEEeecCCccccccceEEEEEEehHHHHHHHhcCCC-CCCCCCCC
Confidence            88888899999999999999999999999999999999999999999999999999999999999987655 45999999


Q ss_pred             eEEeeeee
Q 021445          165 VTITDCGE  172 (312)
Q Consensus       165 i~I~~~g~  172 (312)
                      |+|.+|||
T Consensus       154 i~I~~cgv  161 (162)
T d2cfea1         154 IEIAKCGV  161 (162)
T ss_dssp             EEEEEEEE
T ss_pred             eEEEeeEc
Confidence            99999998

>d1h0pa_ b.62.1.1 (A:) Cyclophilin (eukaryotic) {Caenorhabditis elegans, isoform 5 [TaxId: 6239]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin (eukaryotic)
species: Caenorhabditis elegans, isoform 5 [TaxId: 6239]

Probab=100.00  E-value=8.6e-45  Score=301.68  Aligned_cols=164  Identities=55%  Similarity=0.902  Sum_probs=154.9

Q ss_pred             CeEEEEEEECCeeeeEEEEEEeCCCCchhHHhHHHHhhCCCCCCCCCCCCceecCCEEEEeecCCeEEeCCCCCCCCCCC
Q 021445            4 PRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRVIKGFMIQGGDISAGDGTGG   83 (312)
Q Consensus         4 ~~v~~d~~~~~~~~G~i~ieL~~~~aP~~~~nF~~l~~~~~~~~~~~~~~~~Y~g~~~~rv~~~~~iq~G~~~~~~~~~~   83 (312)
                      .+|||||+++++++|+|+||||.+.||++|+||++||+++++        .+|+|+.||||+|++++|+|+...+++.++
T Consensus         7 ~~vy~di~i~~~~~G~i~IeL~~d~aP~tv~nF~~l~~~g~~--------~~y~g~~f~rv~~~~~iq~G~~~~~~~~g~   78 (182)
T d1h0pa_           7 DRVYFDMEIGGKPIGRIVIGLFGKTVPKTATNFIELAKKPKG--------EGYPGSKFHRVIADFMIQGGDFTRGDGTGG   78 (182)
T ss_dssp             EEEEEEEEETTEEEEEEEEEECTTTSHHHHHHHHHHHHSCTT--------TSSTTCBCCEEETTTEEEECCTTTSSSSCC
T ss_pred             CeEEEEEEECCEECeEEEEEECCCCChHHHHHHHHHHHhccc--------CCcCCceEEEEEecceEEcCCCCCCCCCCC
Confidence            379999999999999999999999999999999999987532        279999999999999999999988888888


Q ss_pred             CcccCCCCCCCcccccCCCcceEEeecCCCCCCCceEEEecCCCCCCCCCCceEEEEEeChHHHHHHhcccCCCCCCccc
Q 021445           84 ESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFFITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIA  163 (312)
Q Consensus        84 ~~~~~~~~~~e~~~~~~~~~G~l~~~~~~~~~~~sqF~I~~~~~~~ld~~~~vfG~V~~G~~vl~~i~~~~~~~~~~P~~  163 (312)
                      .+.++..+.++.....|+.+|+++|++.++++++|||||++++.++||++|+|||+|++||++|++|++.+++.+++|.+
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~G~~~~a~~g~~s~~sqFfIt~~~~~~ldg~ytvFG~Vi~G~dvl~~I~~~~~~~~~~P~~  158 (182)
T d1h0pa_          79 RSIYGEKFADENFKLKHYGAGWLSMANAGADTNGSQFFITTVKTPWLDGRHVVFGKILEGMDVVRKIEQTEKLPGDRPKQ  158 (182)
T ss_dssp             CBTTBSCBCCCCCCSCCCSTTEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTSCEETTTEESS
T ss_pred             CCCCCCccCcccccccccCCceeeecccCCCCcCccccccccccccccccceeEEEEeehHHHHHHHHhcCCCCCCCCCC
Confidence            88889989999888999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ceEEeeeeeeCC
Q 021445          164 DVTITDCGEIPE  175 (312)
Q Consensus       164 ~i~I~~~g~l~~  175 (312)
                      +|.|.+||++..
T Consensus       159 ~v~I~~cG~l~~  170 (182)
T d1h0pa_         159 DVIIAASGHIAV  170 (182)
T ss_dssp             CEEEEEEEEEEE
T ss_pred             CEEEEECCeEeC
Confidence            999999999973

>d1xo7a_ b.62.1.1 (A:) Cyclophilin (eukaryotic) {Trypanosoma cruzi [TaxId: 5693]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin (eukaryotic)
species: Trypanosoma cruzi [TaxId: 5693]

Probab=100.00  E-value=3e-44  Score=294.14  Aligned_cols=162  Identities=54%  Similarity=0.950  Sum_probs=148.4

Q ss_pred             CCeEEEEEEECCeeeeEEEEEEeCCCCchhHHhHHHHhhCCCCCCCCCCCCceecCCEEEEeecCCeEEeCCCCCCCCCC
Q 021445            3 RPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRVIKGFMIQGGDISAGDGTG   82 (312)
Q Consensus         3 ~~~v~~d~~~~~~~~G~i~ieL~~~~aP~~~~nF~~l~~~~~~~~~~~~~~~~Y~g~~~~rv~~~~~iq~G~~~~~~~~~   82 (312)
                      .++|||||+++++.+|+|+||||.+.||.+|+||++||+++.+.        +|+|+.|||++|++++|+|+....++.+
T Consensus         5 t~~V~~di~i~~~~~G~i~ieL~~~~aP~t~~nF~~l~~~~~~~--------~Y~g~~f~rv~~~~~iq~G~~~~~~~~~   76 (166)
T d1xo7a_           5 TDKVYFDITIGDEPVGRVVIGLFGNDVPKTVENFKQLASGENGF--------GYKGSIFHRVIRNFMIQGGDFTNFDGTG   76 (166)
T ss_dssp             CEEEEEEEEETTEEEEEEEEEECTTTCHHHHHHHHHHHHTTTSC--------CSTTCBEEEEETTTEEEECCTTTSSSSC
T ss_pred             CCeEEEEEEECCEECcEEEEEECCCCChHHHHHHHHhhcccccc--------cccCcEEEEEcCCCEEEeCCCCCCCCCC
Confidence            57899999999999999999999999999999999999987332        3999999999999999999998777877


Q ss_pred             CCcccCCCCCCCcccccCCCcceEEeecCCCCCCCceEEEecCCCCCCCCCCceEEEEEeChHHHHHHhcccCCCCCCcc
Q 021445           83 GESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFFITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPI  162 (312)
Q Consensus        83 ~~~~~~~~~~~e~~~~~~~~~G~l~~~~~~~~~~~sqF~I~~~~~~~ld~~~~vfG~V~~G~~vl~~i~~~~~~~~~~P~  162 (312)
                      +...++..++++.. ..|+.+|+|+|++.++++++|||||++++.++||++|+|||+|++||++|++|++.+++.+++|.
T Consensus        77 ~~~~~~~~~~~~~~-~~~~~~G~l~~a~~g~~s~~sqFfIt~~~~~~ld~~~~vfG~Vi~G~~vl~~I~~~~~~~~~~P~  155 (166)
T d1xo7a_          77 GKSIYGTRFDDENL-KIKHFVGAVSMANAGPNSNGSQFFVTTAPTPWLDGRHVVFGKVVEGMDVVKKVENTKTGLNDKPK  155 (166)
T ss_dssp             CCBTTBSCBCCCCC-CSCCCTTEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTSCBCGGGCBS
T ss_pred             CCCCCCcccccccc-cccccccceeecccCCCCCCCeeEEccCCccccCccceeeeEEeeHHHHHHHHHcCCCCCCCCCC
Confidence            77777776666654 44557899999999999999999999999999999999999999999999999999999999999


Q ss_pred             cceEEeeeeee
Q 021445          163 ADVTITDCGEI  173 (312)
Q Consensus       163 ~~i~I~~~g~l  173 (312)
                      ++|.|.+||+|
T Consensus       156 ~~i~I~~cgvl  166 (166)
T d1xo7a_         156 KAVKINDCGVL  166 (166)
T ss_dssp             SCEEEEEEEEC
T ss_pred             CCEEEEeeEeC
Confidence            99999999986

>d1z81a1 b.62.1.1 (A:25-210) Cyclophilin (eukaryotic) {Plasmodium yoelii [TaxId: 5861]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin (eukaryotic)
species: Plasmodium yoelii [TaxId: 5861]

Probab=100.00  E-value=2e-44  Score=300.33  Aligned_cols=169  Identities=49%  Similarity=0.926  Sum_probs=155.0

Q ss_pred             CCCeEEEEEEECCeeeeEEEEEEeCCCCchhHHhHHHHhhCCCCCCCCCCCCceecCCEEEEeecCCeEEeCCCCCCCCC
Q 021445            2 ARPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRVIKGFMIQGGDISAGDGT   81 (312)
Q Consensus         2 ~~~~v~~d~~~~~~~~G~i~ieL~~~~aP~~~~nF~~l~~~~~~~~~~~~~~~~Y~g~~~~rv~~~~~iq~G~~~~~~~~   81 (312)
                      .||+|||||+++++.+|+|+||||.+.||++|+||++||+++.+.   +.....|+|+.|||+++++++|+|+.....+.
T Consensus        15 ~np~V~~di~i~~~~~G~I~ieL~~d~aP~tv~nF~~L~~~~~~~---~~~~~~Y~g~~f~rv~~~~~i~~G~~~~~~~~   91 (186)
T d1z81a1          15 SNPVVFMDINLGNNFLGKFKFELFQNIVPKTSENFRQFCTGEYKV---NNLPVGYKNTIFHRVIKEFMIQGGDFINHNGS   91 (186)
T ss_dssp             TCCEEEEEEEETTEEEEEEEEEECTTTCHHHHHHHHHHHHTCCBS---SSSBCSSTTEECCEEETTTEEEECCTTTSSSC
T ss_pred             CCCEEEEEEEECCEeceEEEEEEcCCCChHHHHHHHHHHhccccc---CCcccccCCCeeeeeecceeeecCCccccCCc
Confidence            389999999999999999999999999999999999999997422   12233599999999999999999998877777


Q ss_pred             CCCcccCCCCCCCcccccCCCcceEEeecCCCCCCCceEEEecCCCCCCCCCCceEEEEEeC--hHHHHHHhcccCCC-C
Q 021445           82 GGESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFFITTTRTSHLDGKHVVFGRVIKG--MGVVRSIEHVMTGD-N  158 (312)
Q Consensus        82 ~~~~~~~~~~~~e~~~~~~~~~G~l~~~~~~~~~~~sqF~I~~~~~~~ld~~~~vfG~V~~G--~~vl~~i~~~~~~~-~  158 (312)
                      +....++..+.++.....|+++|+++|++.++++++|||||++++.++||++|+|||+|++|  |++|++|+.++++. .
T Consensus        92 ~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~g~~~~~sqFfIt~~~~p~Ldg~~tVFG~Vv~G~~mdvv~kI~~~~~~~~~  171 (186)
T d1z81a1          92 GSLSIYGEKFDDENFDIKHDKEGLLSMANSGPNTNGCQFFITTKKCEWLDGKNVVFGRIIDNDSLLLLKKIENVSVTPYI  171 (186)
T ss_dssp             CCCBTTBSCCCCCCCCSCCCSTTEEEECCSSSSCCCSCEEEESSCCGGGBTTBCEEEEECSHHHHHHHHHHHHSCBCTTT
T ss_pred             ccccccCCcccccccccccCCCccchhhhcCCCccccceeeecccccccCCCccEEEEEEeCccHHHHHHHhccCCCCCC
Confidence            77788888899999999999999999999999999999999999999999999999999998  99999999999875 6


Q ss_pred             CCcccceEEeeeeee
Q 021445          159 DCPIADVTITDCGEI  173 (312)
Q Consensus       159 ~~P~~~i~I~~~g~l  173 (312)
                      ++|..+|+|++||++
T Consensus       172 ~~P~~~i~I~~CGel  186 (186)
T d1z81a1         172 YKPKIPINVVECGEL  186 (186)
T ss_dssp             CCBSSCEEEEEEEEC
T ss_pred             CccCCCEEEEeCCcC
Confidence            899999999999986

>d2ok3a1 b.62.1.1 (A:1-159) Cyclophilin-like protein PPIL3B {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin-like protein PPIL3B
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=7.2e-42  Score=277.86  Aligned_cols=151  Identities=48%  Similarity=0.759  Sum_probs=136.9

Q ss_pred             eeeeEEEEEEeCCCCchhHHhHHHHhhCCCCCCCCCCCCceecCCEEEEeecCCeEEeCCCCCCCCCCCCcccCCCCCCC
Q 021445           15 ELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRVIKGFMIQGGDISAGDGTGGESIYGLKFEDE   94 (312)
Q Consensus        15 ~~~G~i~ieL~~~~aP~~~~nF~~l~~~~~~~~~~~~~~~~Y~g~~~~rv~~~~~iq~G~~~~~~~~~~~~~~~~~~~~e   94 (312)
                      |+.|+|+|+||++.||++|+||++||+++           ||+|+.||||+|+++||+||+.. .+.++...++..++.|
T Consensus         7 T~~G~i~ieL~~~~aP~tv~nF~~L~~~g-----------~Y~~~~f~rv~~~~~iq~Gd~~~-~~~~~~~~~~~~~~~e   74 (159)
T d2ok3a1           7 TDVGDIKIEVFCERTPKTCENFLALCASN-----------YYNGCIFHRNIKGFMVQTGDPTG-TGRGGNSIWGKKFEDE   74 (159)
T ss_dssp             ETTEEEEEEECTTTCHHHHHHHHHHHHTT-----------TTTTCBCCEEETTTEEEECCTTS-SSSCCCCTTSSCBCCC
T ss_pred             eCCeEEEEEEcCCCChHHHHHHHHHHhhh-----------cccceeEecccCCeEEEeCCccc-cCCCCcccCCCccccc
Confidence            34899999999999999999999999998           89999999999999999999864 3445556677777777


Q ss_pred             cc-cccCCCcceEEeecCCCCCCCceEEEecCCCCCCCCCCceEEEEEeChHHHHHHhcccCCC-CCCcccceEEeeeee
Q 021445           95 NF-ELKHERKGMLSMANAGPNTNGSQFFITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGD-NDCPIADVTITDCGE  172 (312)
Q Consensus        95 ~~-~~~~~~~G~l~~~~~~~~~~~sqF~I~~~~~~~ld~~~~vfG~V~~G~~vl~~i~~~~~~~-~~~P~~~i~I~~~g~  172 (312)
                      .. .++|+++|+|+|++.++++++|||||++++.|++|++|+|||||++||++|++|++++++. +++|..+|+|.+|.+
T Consensus        75 ~~~~~~~~~~G~lsma~~~~~s~~sqFfIt~~~~p~ld~~~tvFG~V~~G~~vl~~I~~~~~~~~~~~P~~~i~I~~v~i  154 (159)
T d2ok3a1          75 YSEYLKHNVRGVVSMANNGPNTNGSQFFITYGKQPHLDMKYTVFGKVIDGLETLDELEKLPVNEKTYRPLNDVHIKDITI  154 (159)
T ss_dssp             CCTTCCSCSTTEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTCCBCTTTCCBSSCCBEEEEEE
T ss_pred             cccCCCCCCCeEEEEeeCCCCCcCcceEeeeccCcccccceEEEEecccchHHHHHHHcCcCCCCCCCcCCCcEEEEEEE
Confidence            54 6899999999999999999999999999999999999999999999999999999999876 478999999999999


Q ss_pred             eCCCC
Q 021445          173 IPEGA  177 (312)
Q Consensus       173 l~~~~  177 (312)
                      +.+||
T Consensus       155 ~~~Pf  159 (159)
T d2ok3a1         155 HANPF  159 (159)
T ss_dssp             ECCSC
T ss_pred             EeCCC
Confidence            98776

>d2c3ba1 b.62.1.1 (A:1-171) Cyclophilin (eukaryotic) {Aspergillus fumigatus [TaxId: 5085]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin (eukaryotic)
species: Aspergillus fumigatus [TaxId: 5085]

Probab=100.00  E-value=3e-42  Score=283.33  Aligned_cols=162  Identities=52%  Similarity=0.892  Sum_probs=120.9

Q ss_pred             CeEEEEEE-----ECCeeeeEEEEEEeCCCCchhHHhHHHHhhCCCCCCCCCCCCceecCCEEEEeecCCeEEeCCCCCC
Q 021445            4 PRCFLDIS-----IGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRVIKGFMIQGGDISAG   78 (312)
Q Consensus         4 ~~v~~d~~-----~~~~~~G~i~ieL~~~~aP~~~~nF~~l~~~~~~~~~~~~~~~~Y~g~~~~rv~~~~~iq~G~~~~~   78 (312)
                      ++|||||.     ++.|+.|+|+||||.+.||++|+||++||+.+...        .|+++.||||+|++++|+|++..+
T Consensus         2 ~~v~~di~~~~~~~~~T~~G~i~IeL~~~~aP~tv~nF~~l~~~~~~~--------~y~~~~f~ri~~~~~iq~G~~~~~   73 (171)
T d2c3ba1           2 SQVFFDVEYAPVGTAETKVGRIVFNLFDKDVPKTAKNFRELCKRPAGE--------GYRESTFHRIIPNFMIQGGDFTRG   73 (171)
T ss_dssp             CCEEEEEEECCTTCSCCEEEEEEEEECTTTSHHHHHHHHHHHHSCTTT--------SSTTCBCCEEETTTEEEECC----
T ss_pred             CeEEEeeeccccccccceeeEEEEEEcCCCChHHHHHHHHHhhhcccc--------cccCceeeEEEEEEeeEcCCccCC
Confidence            68999998     56778999999999999999999999999986322        399999999999999999999888


Q ss_pred             CCCCCCcccCCCCCCCcccccCCCcceEEeecCCCCCCCceEEEecCCCCCCCCCCceEEEEEe--ChHHHHHHhcccCC
Q 021445           79 DGTGGESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFFITTTRTSHLDGKHVVFGRVIK--GMGVVRSIEHVMTG  156 (312)
Q Consensus        79 ~~~~~~~~~~~~~~~e~~~~~~~~~G~l~~~~~~~~~~~sqF~I~~~~~~~ld~~~~vfG~V~~--G~~vl~~i~~~~~~  156 (312)
                      ++.++...++..+.++...+.|+++|+|+|++.+|++++|||||++++.|+||++|+|||+|++  ||++|++|++++++
T Consensus        74 ~~~~~~~~~~~~~~~~~~~~~~~~~G~lsma~~~~~s~~sqFfI~~~~~~~ldg~~tvFG~Vie~~G~dvl~~I~~~~t~  153 (171)
T d2c3ba1          74 NGTGGRSIYGDKFADENFSRKHDKKGILSMANAGPNTNGSQFFITTAVTSWLDGKHVVFGEVADEKSYSVVKEIEALGSS  153 (171)
T ss_dssp             ------------------CHHHHHTCEEEEC---------CEEEECSCCTTCCSCCEEEEEECSHHHHHHHHHHHTTCCT
T ss_pred             CCCCCCcCCCCccccccccccCCCCceEEeeecCCCCCCcceeeccCCccccCCCceEEEEEEeccCHHHHHHHHcCCCC
Confidence            8887777788888888888999999999999999999999999999999999999999999994  99999999999987


Q ss_pred             CC-CCcccceEEeeeeee
Q 021445          157 DN-DCPIADVTITDCGEI  173 (312)
Q Consensus       157 ~~-~~P~~~i~I~~~g~l  173 (312)
                      .. ..|..+|.|.+||+|
T Consensus       154 ~g~~~p~~~v~I~~cGel  171 (171)
T d2c3ba1         154 SGSVRSNTRPKIVNCGEL  171 (171)
T ss_dssp             TSCCCSSSCCEEEEEEEC
T ss_pred             CCCcCCCCCEEEEeCccC
Confidence            74 479999999999986

>d1zkca1 b.62.1.1 (A:280-457) Peptidyl-prolyl cis-trans isomerase-like 2, Cyclophilin-60, PPI domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Peptidyl-prolyl cis-trans isomerase-like 2, Cyclophilin-60, PPI domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=5.3e-41  Score=277.48  Aligned_cols=154  Identities=44%  Similarity=0.740  Sum_probs=142.1

Q ss_pred             eeeeEEEEEEeCCCCchhHHhHHHHhhCCCCCCCCCCCCceecCCEEEEeecCCeEEeCCCCCCCCCCCCcccCCCCCCC
Q 021445           15 ELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRVIKGFMIQGGDISAGDGTGGESIYGLKFEDE   94 (312)
Q Consensus        15 ~~~G~i~ieL~~~~aP~~~~nF~~l~~~~~~~~~~~~~~~~Y~g~~~~rv~~~~~iq~G~~~~~~~~~~~~~~~~~~~~e   94 (312)
                      |+.|+|+|+||.+.||++|+||++||+++           ||+|+.||||+|++++|+|++. ..++++.+.++.++.+|
T Consensus         7 T~~G~i~IeL~~~~aP~tv~nF~~L~~~~-----------~Y~g~~f~rv~~~~~iq~Gd~~-~~~~~~~~~~~~~~~~E   74 (178)
T d1zkca1           7 TNKGDLNLELHCDLTPKTCENFIRLCKKH-----------YYDGTIFHRSIRNFVIQGGDPT-GTGTGGESYWGKPFKDE   74 (178)
T ss_dssp             ETTEEEEEEECTTTSHHHHHHHHHHHHTT-----------TTTTEEEEEEETTTEEEECCTT-SSSSCCCBTTBSCBCCC
T ss_pred             eCCEEEEEEEcCCCChHHHHHHHHHHhcC-----------CcCceEeeeccceeEEecCCcc-CCCCCCcccCCCCcCCc
Confidence            34899999999999999999999999998           8999999999999999999975 46777788888889888


Q ss_pred             cc-cccCCCcceEEeecCCCCCCCceEEEecCCCCCCCCCCceEEEEEeChHHHHHHhcccCCC-CCCcccceEEeeeee
Q 021445           95 NF-ELKHERKGMLSMANAGPNTNGSQFFITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGD-NDCPIADVTITDCGE  172 (312)
Q Consensus        95 ~~-~~~~~~~G~l~~~~~~~~~~~sqF~I~~~~~~~ld~~~~vfG~V~~G~~vl~~i~~~~~~~-~~~P~~~i~I~~~g~  172 (312)
                      .. .++|+.+|+|+|+++++++++|||||++++.++||++|+|||+|++||++|++|++++++. +++|..+|+|.+|.+
T Consensus        75 ~~~~l~~~~~G~lsma~~~~~s~~sqF~It~~~~~~ld~~~~vFG~Vv~G~dvl~~I~~~~t~~~~~~P~~~v~I~~~~I  154 (178)
T d1zkca1          75 FRPNLSHTGRGILSMANSGPNSNRSQFFITFRSCAYLDKKHTIFGRVVGGFDVLTAMENVESDPKTDRPKEEIRIDATTV  154 (178)
T ss_dssp             CCTTCCSCSTTEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHHSCBCTTTCCBSSCCEEEEEEE
T ss_pred             cccccCCCCCeEEEEeecCCCCccceeeccccCCcccCCcceEEEEeeCcHHHHHHHHcCCCCCCCCccCCCeEEEEEEE
Confidence            54 6899999999999999999999999999999999999999999999999999999999874 689999999999999


Q ss_pred             eCCCCCCC
Q 021445          173 IPEGADDG  180 (312)
Q Consensus       173 l~~~~~~~  180 (312)
                      +.+|++++
T Consensus       155 l~~pf~~~  162 (178)
T d1zkca1         155 FVDPYEEA  162 (178)
T ss_dssp             EECTTHHH
T ss_pred             EcCCcchh
Confidence            98877653

>d1xwna1 b.62.1.1 (A:1-166) Peptidyl-prolyl cis-trans isomerase-like 1, PPIL1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Peptidyl-prolyl cis-trans isomerase-like 1, PPIL1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.8e-41  Score=274.76  Aligned_cols=152  Identities=51%  Similarity=0.868  Sum_probs=142.1

Q ss_pred             CCeEEEEEEECCeeeeEEEEEEeCCCCchhHHhHHHHhhCCCCCCCCCCCCceecCCEEEEeecCCeEEeCCCCCCCCCC
Q 021445            3 RPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRVIKGFMIQGGDISAGDGTG   82 (312)
Q Consensus         3 ~~~v~~d~~~~~~~~G~i~ieL~~~~aP~~~~nF~~l~~~~~~~~~~~~~~~~Y~g~~~~rv~~~~~iq~G~~~~~~~~~   82 (312)
                      +|+|+|+++     +|+|+||||.+.||++|+||++||+.+           ||+|+.||||++++++|+||+. +.+.+
T Consensus        11 ~p~v~~~T~-----~G~i~ieL~~~~aP~tv~nF~~L~~~g-----------~Y~g~~f~rv~~~~~iq~Gd~~-~~~~~   73 (166)
T d1xwna1          11 PPNVYLETS-----MGIIVLELYWKHAPKTCKNFAELARRG-----------YYNGTKFHRIIKDFMIQGGDPT-GTGRG   73 (166)
T ss_dssp             CCEEEEEES-----SCEEEEEECTTTCHHHHHHHHHHHHHT-----------SSTTCCEEEEETTTEEEECCST-TTTSS
T ss_pred             CCEEEEEEC-----ceeEEEEEcCCCChHHHHHHHHHHhcC-----------CcCceeeeEEcccEEEEeCCCC-CCCCC
Confidence            799999999     699999999999999999999999998           8999999999999999999985 56677


Q ss_pred             CCcccCCCCCCCcc-cccCCCcceEEeecCCCCCCCceEEEecCCCCCCCCCCceEEEEEeChHHHHHHhcccCCCCCCc
Q 021445           83 GESIYGLKFEDENF-ELKHERKGMLSMANAGPNTNGSQFFITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCP  161 (312)
Q Consensus        83 ~~~~~~~~~~~e~~-~~~~~~~G~l~~~~~~~~~~~sqF~I~~~~~~~ld~~~~vfG~V~~G~~vl~~i~~~~~~~~~~P  161 (312)
                      +...++..+++|.. .+.|+++|+|+|+++++++++|||||++++.++||++|+|||+|++||+||++|++++++.+++|
T Consensus        74 ~~~~~~~~~~~e~~~~~~~~~~G~lsm~~~~~~s~~sqFfI~~~~~~~ld~~~tvFG~Vi~G~dvl~~I~~~~t~~~~~P  153 (166)
T d1xwna1          74 GASIYGKQFEDELHPDLKFTGAGILAMANAGPDTNGSQFFVTLAPTQWLDGKHTIFGRVCQGIGMVNRVGMVETNSQDRP  153 (166)
T ss_dssp             CCCSSCSCCCCCCCTTCCSCSSSEEEEEEEETTEEEEEEEEECSCCSTTTTTSEEEEECSSCHHHHHHHHHSCBCSSSCB
T ss_pred             CccCCCCccccccCCCCCCCCCeEEEecccCCCCCCcceEEeecChhhccccceEEEEEechHHHHHHHHhCCCCCCCCC
Confidence            77788888888754 78899999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccceEEeeee
Q 021445          162 IADVTITDCG  171 (312)
Q Consensus       162 ~~~i~I~~~g  171 (312)
                      ..+|+|.+.-
T Consensus       154 ~~~I~I~~a~  163 (166)
T d1xwna1         154 VDDVKIIKAY  163 (166)
T ss_dssp             SSCCCEEEEE
T ss_pred             CCCeEEEEee
Confidence            9999998864

>d2fu0a1 b.62.1.1 (A:5-159) Putative cyclophilin PFE0505w {Plasmodium falciparum [TaxId: 5833]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Putative cyclophilin PFE0505w
species: Plasmodium falciparum [TaxId: 5833]

Probab=100.00  E-value=3.7e-40  Score=266.78  Aligned_cols=146  Identities=49%  Similarity=0.739  Sum_probs=136.4

Q ss_pred             eeeeEEEEEEeCCCCchhHHhHHHHhhCCCCCCCCCCCCceecCCEEEEeecCCeEEeCCCCCCCCCCCCcccCCCCCCC
Q 021445           15 ELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRVIKGFMIQGGDISAGDGTGGESIYGLKFEDE   94 (312)
Q Consensus        15 ~~~G~i~ieL~~~~aP~~~~nF~~l~~~~~~~~~~~~~~~~Y~g~~~~rv~~~~~iq~G~~~~~~~~~~~~~~~~~~~~e   94 (312)
                      |++|+|+||||.+.||++|+||++||+++           ||+|+.||||+|++++|+||+. +.+.++.+.++..++++
T Consensus         8 T~~G~i~ieL~~~~aP~tv~nF~~l~~~g-----------~Y~g~~f~rv~~~~~iq~Gd~~-~~~~~~~~~~~~~~~~~   75 (155)
T d2fu0a1           8 TTMGDIHISLFYKECKKTVQNFSVHSING-----------YYNNCIFHRVIKHFMVQTGDPS-GDGTGGESIWGNEFEDE   75 (155)
T ss_dssp             ETTEEEEEEECTTTCHHHHHHHHHHHHTT-----------TTTTCBCCEEETTTEEEECCTT-SSSSCCCCTTSSCBCCC
T ss_pred             EcccEEEEEEcCCCChHHHHHHhhHhhCC-----------ccccceeeeeeecceeeccCCC-CCCcCCcccCCCccccc
Confidence            34899999999999999999999999997           8999999999999999999986 55667778888888888


Q ss_pred             cc-cccCCCcceEEeecCCCCCCCceEEEecCCCCCCCCCCceEEEEEeChHHHHHHhcccCCCCCCcccceEEeeeee
Q 021445           95 NF-ELKHERKGMLSMANAGPNTNGSQFFITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTITDCGE  172 (312)
Q Consensus        95 ~~-~~~~~~~G~l~~~~~~~~~~~sqF~I~~~~~~~ld~~~~vfG~V~~G~~vl~~i~~~~~~~~~~P~~~i~I~~~g~  172 (312)
                      .. .+.|.++|+++|++.++++++|||||++++.|+||++|+|||+|++||++|++|++++++.+++|..+|+|.+|.+
T Consensus        76 ~~~~~~~~~~~~~~~~~~~~~s~~sqFfI~~~~~~~ld~~~tvFG~Vi~G~~vv~~I~~~~t~~~~~P~~~i~I~~v~i  154 (155)
T d2fu0a1          76 FFDHLNHSKPFMVSMANCGPNTNGSQFFITTVPCPWLDFKHTVFGKVTQGSKIVLDIEKVRTDKRDKPLEDIKILNIKI  154 (155)
T ss_dssp             CBTTBCSSSSSEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTSCBCTTSCBSSCCBEEEEEE
T ss_pred             cccccccCCccEEEecccCCCCCCccceecccCccccccceEEEEEEeccHHHHHHHHhCCCCCCCCcCCCcEEEEEEE
Confidence            76 6889899999999999999999999999999999999999999999999999999999999999999999999965

>d1v9ta_ b.62.1.1 (A:) Peptidyl-prolyl cis-trans isomerase A, PpiA {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Peptidyl-prolyl cis-trans isomerase A, PpiA
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=5.3e-40  Score=268.74  Aligned_cols=154  Identities=32%  Similarity=0.503  Sum_probs=136.2

Q ss_pred             CCCeEEEEEEECCeeeeEEEEEEeCCCCchhHHhHHHHhhCCCCCCCCCCCCceecCCEEEEeecCCeEEeCCCCCCCCC
Q 021445            2 ARPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRVIKGFMIQGGDISAGDGT   81 (312)
Q Consensus         2 ~~~~v~~d~~~~~~~~G~i~ieL~~~~aP~~~~nF~~l~~~~~~~~~~~~~~~~Y~g~~~~rv~~~~~iq~G~~~~~~~~   81 (312)
                      +||+|+|+++     .|+|+|+||.+.||++|+||++||+.+           ||+|+.||||+|++++|+|+.....+.
T Consensus         3 g~~~V~l~T~-----~G~i~ieL~~~~aP~tv~nF~~L~~~~-----------~Y~g~~fhRv~~~~~iq~G~~~~~~~~   66 (166)
T d1v9ta_           3 GDPHVLLTTS-----AGNIELELDKQKAPVSVQNFVDYVNSG-----------FYNNTTFHRVIPGFMIQGGGFTEQMQQ   66 (166)
T ss_dssp             CSCEEEEEET-----TEEEEEEECTTTCHHHHHHHHHHHHTT-----------TTTTCBEEEEETTTEEEESSBCTTCCB
T ss_pred             CCCEEEEEEC-----CeeEEEEEeCCCChHHHHHHHHHhhCC-----------ccccceeeEEEEEeecccCCcCCcccc
Confidence            4899999998     799999999999999999999999998           899999999999999999997654443


Q ss_pred             CCCcccCCCCCCCcccccCCCcceEEeecCC-CCCCCceEEEecCCCCCCCCC-----CceEEEEEeChHHHHHHhcccC
Q 021445           82 GGESIYGLKFEDENFELKHERKGMLSMANAG-PNTNGSQFFITTTRTSHLDGK-----HVVFGRVIKGMGVVRSIEHVMT  155 (312)
Q Consensus        82 ~~~~~~~~~~~~e~~~~~~~~~G~l~~~~~~-~~~~~sqF~I~~~~~~~ld~~-----~~vfG~V~~G~~vl~~i~~~~~  155 (312)
                      +   .++.++.+|.....|+.+|.|+|++.+ +++++|||||++++.++||+.     |+|||+|++||++|++|+++++
T Consensus        67 ~---~~~~~~~~e~~~~~~~~rg~v~~~~~~~~~s~~sqFfI~~~~~~~ld~~~~~~~~tvfG~VveG~dvl~~I~~~~~  143 (166)
T d1v9ta_          67 K---KPNPPIKNEADNGLRNTRGTIAMARTADKDSATSQFFINVADNAFLDHGQRDFGYAVFGKVVKGMDVADKISQVPT  143 (166)
T ss_dssp             C---CCCCCBCCCGGGSCCCCTTEEEECCCSSTTCBCSCEEEESSCCGGGSCCSSCCCCCEEEEEEECHHHHHHHHTSCE
T ss_pred             c---CCCCCccccccccccccCCEEEEEeeecCCCcccccccccCCccccccccccCCEEEeeEEeccHHHHHHHHhCcc
Confidence            3   346778888776666688999998854 899999999999998888864     8999999999999999999988


Q ss_pred             CCC----CCcccceEEeeeeeeC
Q 021445          156 GDN----DCPIADVTITDCGEIP  174 (312)
Q Consensus       156 ~~~----~~P~~~i~I~~~g~l~  174 (312)
                      +..    ++|.++|+|.+|++++
T Consensus       144 ~~~~~~~~~P~~~v~I~~~~vlp  166 (166)
T d1v9ta_         144 HDVGPYQNVPSKPVVILSATVLP  166 (166)
T ss_dssp             EEETTEEEEESSCCBEEEEEECC
T ss_pred             cCCCCCCCccCCCeEEEEEEEcC
Confidence            663    4899999999999985

>d2b71a1 b.62.1.1 (A:23-191) Cyclophilin-like protein PY00693 {Plasmodium yoelii [TaxId: 5861]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin-like protein PY00693
species: Plasmodium yoelii [TaxId: 5861]

Probab=100.00  E-value=1.3e-39  Score=267.08  Aligned_cols=152  Identities=49%  Similarity=0.724  Sum_probs=136.8

Q ss_pred             CCeEEEEEEECCeeeeEEEEEEeCCCCchhHHhHHHHhhCCCCCCCCCCCCceecCCEEEEeecCCeEEeCCCCCCCCCC
Q 021445            3 RPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRVIKGFMIQGGDISAGDGTG   82 (312)
Q Consensus         3 ~~~v~~d~~~~~~~~G~i~ieL~~~~aP~~~~nF~~l~~~~~~~~~~~~~~~~Y~g~~~~rv~~~~~iq~G~~~~~~~~~   82 (312)
                      +.+|-|+++     .|+|+||||++.||++|+||++||+.+           ||+|+.|||+++++++|||++. +.+.+
T Consensus        16 ~~~V~l~T~-----~G~i~IeL~~d~aP~tv~nF~~L~~~g-----------~Y~~~~f~rv~~~~~iq~g~~~-~~~~~   78 (169)
T d2b71a1          16 RGYITIYTN-----LGDFEVELYWYHSPKTCLNFYTLCEMG-----------FYDNTIFHRVIPNFVIQGGDPT-GTGKG   78 (169)
T ss_dssp             SCEEEEEET-----TEEEEEEECTTTSHHHHHHHHHHHHTT-----------TTTTEEEEEEETTTEEEEEETT-SSSSC
T ss_pred             ccEEEEEeC-----ceeEEEEEeCCCCcHHHHHHHHHhhCC-----------ccceeeeccccceeeEeccccc-cccCC
Confidence            344555554     899999999999999999999999998           8999999999999999999976 44455


Q ss_pred             CCcccCCCCCCCcc-cccCCCcceEEeecCCCCCCCceEEEecCCCCCCCCCCceEEEEEeChHHHHHHhcccCCCCCCc
Q 021445           83 GESIYGLKFEDENF-ELKHERKGMLSMANAGPNTNGSQFFITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCP  161 (312)
Q Consensus        83 ~~~~~~~~~~~e~~-~~~~~~~G~l~~~~~~~~~~~sqF~I~~~~~~~ld~~~~vfG~V~~G~~vl~~i~~~~~~~~~~P  161 (312)
                      +.++.+..+.+|.. .++|.++|+|+|++.+|++++|||||++++.++||++|+|||+|++||++|++|++++++.+++|
T Consensus        79 ~~~~~~~~~~~e~~~~l~h~~~g~ls~~~~~p~s~~sqFfIt~~~~~~ld~~~tvFG~Vv~G~dvl~~I~~~~~~~~~~P  158 (169)
T d2b71a1          79 GKSIYGEYFEDEINKELKHTGAGILSMSNNGPNTNSSQFFITLAPLPHLDGKHTIFARVSKNMTCIENIASVQTTATNKP  158 (169)
T ss_dssp             CCBTTBSCBCCCCCTTCCCCSTTEEEECCSSTTCBSSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTSCBCTTCCB
T ss_pred             CccccccccccccccccCCCCcEEEEhhhCCCCCCCCEEEEecCCcchhhhhcceeeEEeccHHHHHHHHhCCCCCCCCC
Confidence            66666777777754 68999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccceEEeeee
Q 021445          162 IADVTITDCG  171 (312)
Q Consensus       162 ~~~i~I~~~g  171 (312)
                      ..+|+|.+++
T Consensus       159 ~~~i~I~~~~  168 (169)
T d2b71a1         159 IFDLKILRTS  168 (169)
T ss_dssp             SSCCEEEEEE
T ss_pred             CCCeEEEEcc
Confidence            9999999986

>d2a2na1 b.62.1.1 (A:483-646) Peptidylprolyl isomerase domain and WD repeat-containing protein 1, PPWD1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Peptidylprolyl isomerase domain and WD repeat-containing protein 1, PPWD1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.7e-38  Score=256.83  Aligned_cols=149  Identities=48%  Similarity=0.670  Sum_probs=129.9

Q ss_pred             ECCeeeeEEEEEEeCCCCchhHHhHHHHhhCCCCCCCCCCCCceecCCEEEEeecCCeEEeCCCCCCCCCCCCcccCCCC
Q 021445           12 IGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRVIKGFMIQGGDISAGDGTGGESIYGLKF   91 (312)
Q Consensus        12 ~~~~~~G~i~ieL~~~~aP~~~~nF~~l~~~~~~~~~~~~~~~~Y~g~~~~rv~~~~~iq~G~~~~~~~~~~~~~~~~~~   91 (312)
                      +-.|+.|+|+|+||.+.||++|+||++||+.+           ||+|+.|||+++++++|+|++......+... ....+
T Consensus        13 ~~~T~~G~i~ieL~~~~aP~tv~nF~~l~~~g-----------~Y~g~~f~rv~~~~~iq~G~~~~~~~~~~~~-~~~~~   80 (164)
T d2a2na1          13 IIHTSMGDIHTKLFPVECPKTVENFCVHSRNG-----------YYNGHTFHRIIKGFMIQTGDPTGTGMGGESI-WGGEF   80 (164)
T ss_dssp             EEEETTEEEEEEECTTTCHHHHHHHHHHHHTT-----------TTTTCBCCEEETTTEEEECCTTSSSSCCCCT-TSSCB
T ss_pred             EEEeceeEEEEEEcCCCChHHHHHHHHHHhCC-----------CcccceeeEEeeeeeEeecccccccCCCcee-eeccc
Confidence            33455899999999999999999999999998           8999999999999999999986443333332 23334


Q ss_pred             CCC-cccccCCCcceEEeecCCCCCCCceEEEecCCCCCCCCCCceEEEEEeChHHHHHHhcccCCC-CCCcccceEEee
Q 021445           92 EDE-NFELKHERKGMLSMANAGPNTNGSQFFITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGD-NDCPIADVTITD  169 (312)
Q Consensus        92 ~~e-~~~~~~~~~G~l~~~~~~~~~~~sqF~I~~~~~~~ld~~~~vfG~V~~G~~vl~~i~~~~~~~-~~~P~~~i~I~~  169 (312)
                      .++ ...++|+++|+++|++.++++++|||||++++.++||++|+|||+|++||++|++|++++++. +++|..+|+|.+
T Consensus        81 ~~~~~~~~~~~~~~~l~~~~~~~~s~~sqFfI~~~~~~~ld~~~tVFG~V~~G~dvv~~I~~~~~~~~~~~P~~~V~I~~  160 (164)
T d2a2na1          81 EDEFHSTLRHDRPYTLSMANAGSNTNGSQFFITVVPTPWLDNKHTVFGRVTKGMEVVQRISNVKVNPKTDKPYEDVSIIN  160 (164)
T ss_dssp             CCCCCTTCCSCSSSEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTSCBCTTTCCBSSCCBEEE
T ss_pred             ccccccccccCccceeehhhcCCCCCcccceecccCccccccceeEEEEecChHHHHHHHHcCCcCCCCCCcCCCcEEEE
Confidence            444 457899999999999999999999999999999999999999999999999999999999975 489999999999


Q ss_pred             eee
Q 021445          170 CGE  172 (312)
Q Consensus       170 ~g~  172 (312)
                      +.+
T Consensus       161 v~i  163 (164)
T d2a2na1         161 ITV  163 (164)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            976

>d1w74a_ b.62.1.1 (A:) Peptidyl-prolyl cis-trans isomerase A, PpiA {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Peptidyl-prolyl cis-trans isomerase A, PpiA
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=100.00  E-value=2.3e-37  Score=254.35  Aligned_cols=154  Identities=44%  Similarity=0.717  Sum_probs=132.0

Q ss_pred             eeeeEEEEEEeCCCCchhHHhHHHHhhCCCCCCC----CCCCCceecCCEEEEeecCCeEEeCCCCCCCCCCCCcccCCC
Q 021445           15 ELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGP----NTGVPLHYKGVRFHRVIKGFMIQGGDISAGDGTGGESIYGLK   90 (312)
Q Consensus        15 ~~~G~i~ieL~~~~aP~~~~nF~~l~~~~~~~~~----~~~~~~~Y~g~~~~rv~~~~~iq~G~~~~~~~~~~~~~~~~~   90 (312)
                      |+.|+|+||||++.||++|+||++||+++++.+.    ......||+|+.|||+++++++|||++.. .+.+..   ...
T Consensus        10 T~~G~I~ieL~~d~aP~tv~nF~~L~~~~~~~~~~~~~~~~~~~~Y~g~~~~rv~~~~~iq~g~~~~-~~~~~~---~~~   85 (171)
T d1w74a_          10 TNRGDIKIALFGNHAPKTVANFVGLAQGTKDYSTQNASGGPSGPFYDGAVFHRVIQGFMIQGGDPTG-TGRGGP---GYK   85 (171)
T ss_dssp             ETTEEEEEEECTTTSHHHHHHHHHHHHTCSCCSSCCTTBSSSSCSSTTEEEEEEETTTEEEECCTTS-SSSCCS---SCC
T ss_pred             ECCEEEEEEEcCCCChHHHHHHHHHHhcCCccccccccccccCceECCeecccccCCceeEcccccC-CCCCCc---ccc
Confidence            4489999999999999999999999998865432    12334589999999999999999999763 333322   223


Q ss_pred             CCCC-cccccCCCcceEEeecCCCCCCCceEEEecCCCCCCCCCCceEEEEE--eChHHHHHHhcccCCCCCCcccceEE
Q 021445           91 FEDE-NFELKHERKGMLSMANAGPNTNGSQFFITTTRTSHLDGKHVVFGRVI--KGMGVVRSIEHVMTGDNDCPIADVTI  167 (312)
Q Consensus        91 ~~~e-~~~~~~~~~G~l~~~~~~~~~~~sqF~I~~~~~~~ld~~~~vfG~V~--~G~~vl~~i~~~~~~~~~~P~~~i~I  167 (312)
                      +.+| ...++|+++|+|+|++.++++++|||||++++.|+||++|+|||+|+  +||+||++|++++++.+++|..+|+|
T Consensus        86 ~~~e~~~~~~~~~~g~v~~~~~~~~s~~sqFfIt~~~~p~ld~~~tVFG~Vv~geGmdvl~~I~~~~~~~~~~P~~~i~I  165 (171)
T d1w74a_          86 FADEFHPELQFDKPYLLAMANAGPGTNGSQFFITVGKTPHLNRRHTIFGEVIDAESQRVVEAISKTATDGNDRPTDPVVI  165 (171)
T ss_dssp             BCCCCCTTCCSCSSSEEEECCSSTTCBSSCEEEESSCCGGGTTTSCEEEEECSHHHHHHHHHHHTSCBCTTSCBSSCCEE
T ss_pred             cccccCCCcCCCCCEEEEEEecCCCCCCcceEeeccCCCccccccEEEEEEeccccHHHHHHHHcCCcCCCCccCCCcEE
Confidence            4444 45789999999999999999999999999999999999999999999  49999999999999999999999999


Q ss_pred             eeeee
Q 021445          168 TDCGE  172 (312)
Q Consensus       168 ~~~g~  172 (312)
                      .++.+
T Consensus       166 ~~v~i  170 (171)
T d1w74a_         166 ESITI  170 (171)
T ss_dssp             EEEEE
T ss_pred             EEEEE
Confidence            99875

>d1lopa_ b.62.1.1 (A:) Peptidyl-prolyl cis-trans isomerase A, PpiA {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Peptidyl-prolyl cis-trans isomerase A, PpiA
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=6.9e-37  Score=249.63  Aligned_cols=145  Identities=33%  Similarity=0.532  Sum_probs=124.4

Q ss_pred             eeeeEEEEEEeCCCCchhHHhHHHHhhCCCCCCCCCCCCceecCCEEEEeecCCeEEeCCCCCCCCCCCCcccCCCCCCC
Q 021445           15 ELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRVIKGFMIQGGDISAGDGTGGESIYGLKFEDE   94 (312)
Q Consensus        15 ~~~G~i~ieL~~~~aP~~~~nF~~l~~~~~~~~~~~~~~~~Y~g~~~~rv~~~~~iq~G~~~~~~~~~~~~~~~~~~~~e   94 (312)
                      |+.|+|+|+||.+.||++|+||++||+.+           ||+|+.||||+|++++|+|++....+.   ...+.++.+|
T Consensus         6 T~~G~i~ieL~~~~aP~t~~nF~~l~~~g-----------~Y~g~~fhrv~~~~~iq~G~~~~~~~~---~~~~~~~~~e   71 (164)
T d1lopa_           6 TNHGDIVIKTFDDKAPETVKNFLDYCREG-----------FYNNTIFHRVINGFMIQGGGFEPGMKQ---KATKEPIKNE   71 (164)
T ss_dssp             ETTEEEEEEECTTTSHHHHHHHHHHHHTT-----------TTTTEECCEEETTTEEEESSEETTTEE---CCCCCCBCCC
T ss_pred             eCCeEEEEEEcCCCCHHHHHHHHHHHHcc-----------CcCCceeeEEcCCceeeeeccccCCcC---CccCCCcccc
Confidence            33899999999999999999999999988           899999999999999999987543332   2246678887


Q ss_pred             cccccCCCcceEEeecC-CCCCCCceEEEecCCC--------CCCCCCCceEEEEEeChHHHHHHhcccCCCC----CCc
Q 021445           95 NFELKHERKGMLSMANA-GPNTNGSQFFITTTRT--------SHLDGKHVVFGRVIKGMGVVRSIEHVMTGDN----DCP  161 (312)
Q Consensus        95 ~~~~~~~~~G~l~~~~~-~~~~~~sqF~I~~~~~--------~~ld~~~~vfG~V~~G~~vl~~i~~~~~~~~----~~P  161 (312)
                      .....++.+|.|+|++. ++++++|||||++.+.        +++|++|+|||+|++||++|++|+.++++..    ++|
T Consensus        72 ~~~~~~h~~g~l~~~~~~~~~~~~sqFfi~~~~~~~~~~~~~~~~~~~ytvFG~Vv~G~dvl~~I~~~~t~~~~~~~~~P  151 (164)
T d1lopa_          72 ANNGLKNTRGTLAMARTQAPHSATAQFFINVVDNDFLNFSGESLQGWGYCVFAEVVDGMDEVDKIKGVATGRSGMHQDVP  151 (164)
T ss_dssp             CCSSCCCCTTEEEECCCSSTTCBCSCEEEESSCCGGGSCCSSSTTTSCCCEEEEEEECHHHHHHHHTSCEEEETTEEEEE
T ss_pred             ccccccceeeEEEEeccCCCCCccceeeeeccccccccccCCCcCCCceeecCEEeccHHHHHHHHhCCcCCCCCcCCCc
Confidence            65555557799999875 5999999999999764        7889999999999999999999999998764    389


Q ss_pred             ccceEEeeeeee
Q 021445          162 IADVTITDCGEI  173 (312)
Q Consensus       162 ~~~i~I~~~g~l  173 (312)
                      ..+|+|.++.+.
T Consensus       152 ~~~v~I~~v~I~  163 (164)
T d1lopa_         152 KEDVIIESVTVS  163 (164)
T ss_dssp             SSCCEEEEEEEC
T ss_pred             CCCeEEEEEEEe
Confidence            999999999875

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.80  E-value=2e-19  Score=145.90  Aligned_cols=125  Identities=31%  Similarity=0.478  Sum_probs=110.4

Q ss_pred             CCCCCCCCCCCCCCCCCCChhhhhhhhhhhHhhhhhHHhhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHH
Q 021445          186 NDGDSYPDWPADLDQTPNELSWWMNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQ  265 (312)
Q Consensus       186 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~  265 (312)
                      ++||.|+++|+|...+..+.+..++.+..+++.|+.+|+.|+|.+|+..|++||+++....  ......+...+++....
T Consensus         1 ~~gd~~~d~p~d~~~~l~~~~~~~~~a~~~~~~~~~~~~~~~y~~Ai~~y~~al~~~~~~~--~~~~~~~~~~~~~~~~~   78 (169)
T d1ihga1           1 GSGDSHPDFPEDADVDLKDVDKILLISEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSR--AAAEDADGAKLQPVALS   78 (169)
T ss_dssp             SSCCCSCSSGGGSSSCTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH--HHSCHHHHGGGHHHHHH
T ss_pred             CCCCCCCCCchhhHHCHhhHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhh--hhhhhHHHHHhChhhHH
Confidence            3689999999998888889999999999999999999999999999999999999775532  12223334457889999


Q ss_pred             HHhHHHHHHHHcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHhhhhC
Q 021445          266 IFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQVSIILL  312 (312)
Q Consensus       266 ~~~N~a~~~~kl~~~~~Ai~~~~~al~l~p~~~Ka~~rrg~a~~~L~  312 (312)
                      +|.|||.||+++++|++|+.+|++||+++|++++||+++|.||..|.
T Consensus        79 ~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~l~  125 (169)
T d1ihga1          79 CVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLK  125 (169)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHhhcccchhhhhhhhhhhhhhhhhhHHHhHHHHHHHcc
Confidence            99999999999999999999999999999999999999999998763

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=99.77  E-value=2e-18  Score=137.83  Aligned_cols=108  Identities=23%  Similarity=0.241  Sum_probs=92.9

Q ss_pred             CCChhhhhhhhhhhHhhhhhHHhhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHcCCHH
Q 021445          202 PNELSWWMNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLK  281 (312)
Q Consensus       202 ~~~~~~~~~~~~~~k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~  281 (312)
                      +.+.++.++.+..++++||.+|++|+|.+|+..|++||.++...  ....+........+....+|+|+|.||+++++|+
T Consensus         7 ~~~~~e~~~~a~~~~~~G~~~f~~~~y~~A~~~Y~~al~~~~~~--~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~   84 (153)
T d2fbna1           7 DYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHT--EEWDDQILLDKKKNIEISCNLNLATCYNKNKDYP   84 (153)
T ss_dssp             GCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTC--TTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHH
T ss_pred             hCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcch--hhhhhHHHHHhhhhHHHHHHhhHHHHHHHhcccc
Confidence            34567888999999999999999999999999999999977543  2222333334566778899999999999999999


Q ss_pred             HHHHHHHHHHHcCCCchHHHHHHHHHhhhh
Q 021445          282 GALLDTEFAMRDGDDNVKALFRQGQVSIIL  311 (312)
Q Consensus       282 ~Ai~~~~~al~l~p~~~Ka~~rrg~a~~~L  311 (312)
                      +|+++|++||+++|.++||||++|.||..|
T Consensus        85 ~Al~~~~~al~~~p~~~ka~~~~g~~~~~l  114 (153)
T d2fbna1          85 KAIDHASKVLKIDKNNVKALYKLGVANMYF  114 (153)
T ss_dssp             HHHHHHHHHHHHSTTCHHHHHHHHHHHHHH
T ss_pred             hhhhhhhccccccchhhhhhHHhHHHHHHc
Confidence            999999999999999999999999999876

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=99.76  E-value=3.6e-18  Score=138.34  Aligned_cols=106  Identities=23%  Similarity=0.339  Sum_probs=95.3

Q ss_pred             CChhhhhhhhhhhHhhhhhHHhhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHcCCHHH
Q 021445          203 NELSWWMNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKG  282 (312)
Q Consensus       203 ~~~~~~~~~~~~~k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~  282 (312)
                      .+.++.++.+..++++||.+|+.|+|.+|+..|++||.++..   ......+......+....+|+|+|.||+++++|.+
T Consensus         6 m~~~E~~~~a~~~~e~G~~~~~~~~~~~A~~~Y~~al~~~~~---~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~   82 (168)
T d1kt1a1           6 MDTKEKLEQAAIVKEKGTVYFKGGKYVQAVIQYGKIVSWLEM---EYGLSEKESKASESFLLAAFLNLAMCYLKLREYTK   82 (168)
T ss_dssp             SCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTT---CCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH---hhccchhhhhhcchhHHHHHHhHHHHHHHhhhccc
Confidence            456778889999999999999999999999999999998765   34445555667888899999999999999999999


Q ss_pred             HHHHHHHHHHcCCCchHHHHHHHHHhhhh
Q 021445          283 ALLDTEFAMRDGDDNVKALFRQGQVSIIL  311 (312)
Q Consensus       283 Ai~~~~~al~l~p~~~Ka~~rrg~a~~~L  311 (312)
                      |+.+|++||+++|.++++|+++|.+|..|
T Consensus        83 Ai~~~~~al~l~p~~~~a~~~~~~~~~~l  111 (168)
T d1kt1a1          83 AVECCDKALGLDSANEKGLYRRGEAQLLM  111 (168)
T ss_dssp             HHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred             chhhhhhhhhcccchHHHHHHHHHHHHHc
Confidence            99999999999999999999999999876

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.72  E-value=3e-17  Score=133.11  Aligned_cols=106  Identities=21%  Similarity=0.319  Sum_probs=95.0

Q ss_pred             CChhhhhhhhhhhHhhhhhHHhhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHcCCHHH
Q 021445          203 NELSWWMNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKG  282 (312)
Q Consensus       203 ~~~~~~~~~~~~~k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~  282 (312)
                      .+.+++++.+..++++||.+|+.|+|++|+..|++||.++..   ......++..........+|.|+|.||+++++|++
T Consensus         4 ~~~~ek~~~a~~l~~~G~~~~~~~~~~~Ai~~y~~al~~~~~---~~~~~~~~~~~~~~~~~~~~~nla~~y~k~~~~~~   80 (170)
T d1p5qa1           4 MNSEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEY---ESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSA   80 (170)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTT---CCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhh---ccccchHHHhhhchhHHHHHHHHHHHHHhhhhccc
Confidence            456788899999999999999999999999999999998765   33344555566788889999999999999999999


Q ss_pred             HHHHHHHHHHcCCCchHHHHHHHHHhhhh
Q 021445          283 ALLDTEFAMRDGDDNVKALFRQGQVSIIL  311 (312)
Q Consensus       283 Ai~~~~~al~l~p~~~Ka~~rrg~a~~~L  311 (312)
                      |+.+|++||.++|+++++|+++|.+|..+
T Consensus        81 A~~~~~~al~~~p~~~~a~~~~g~~~~~~  109 (170)
T d1p5qa1          81 AIESCNKALELDSNNEKGLSRRGEAHLAV  109 (170)
T ss_dssp             HHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred             ccchhhhhhhccccchhhhHHHHHHHHHh
Confidence            99999999999999999999999999876

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.62  E-value=3e-16  Score=129.07  Aligned_cols=83  Identities=27%  Similarity=0.355  Sum_probs=79.0

Q ss_pred             hhhhhHhhhhhHHhhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHcCCHHHHHHHHHHH
Q 021445          211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA  290 (312)
Q Consensus       211 ~~~~~k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~a  290 (312)
                      .++.++++||.+|+.|+|++|+..|++||.                  ++|....+|.|+|.||+++|+|++|+.+|++|
T Consensus         3 ~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~------------------~~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~a   64 (201)
T d2c2la1           3 SAQELKEQGNRLFVGRKYPEAAACYGRAIT------------------RNPLVAVYYTNRALCYLKMQQPEQALADCRRA   64 (201)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH------------------HCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHH------------------hCCCCHHHHHhHHHHHhhhhhhhhhhHHHHHH
Confidence            467899999999999999999999999999                  66777889999999999999999999999999


Q ss_pred             HHcCCCchHHHHHHHHHhhhh
Q 021445          291 MRDGDDNVKALFRQGQVSIIL  311 (312)
Q Consensus       291 l~l~p~~~Ka~~rrg~a~~~L  311 (312)
                      |+++|+++++|+++|.+|..|
T Consensus        65 l~l~p~~~~a~~~lg~~~~~l   85 (201)
T d2c2la1          65 LELDGQSVKAHFFLGQCQLEM   85 (201)
T ss_dssp             TTSCTTCHHHHHHHHHHHHHT
T ss_pred             HHhCCCcHHHHHHHHHHHHHC
Confidence            999999999999999999876

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.62  E-value=6.5e-16  Score=117.24  Aligned_cols=83  Identities=25%  Similarity=0.256  Sum_probs=78.9

Q ss_pred             hhhhhHhhhhhHHhhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHcCCHHHHHHHHHHH
Q 021445          211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA  290 (312)
Q Consensus       211 ~~~~~k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~a  290 (312)
                      .++.++++||.+|+.|+|++|+..|+++|+                  .+|....+|.|+|.||+++++|++|+.+|+++
T Consensus         2 ~~~~l~~~g~~~~~~g~~~eAi~~~~~al~------------------~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a   63 (117)
T d1elwa_           2 QVNELKEKGNKALSVGNIDDALQCYSEAIK------------------LDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKT   63 (117)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH------------------HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHh------------------cCCcchhhhhcccccccccccccccchhhhhH
Confidence            567899999999999999999999999999                  67778889999999999999999999999999


Q ss_pred             HHcCCCchHHHHHHHHHhhhh
Q 021445          291 MRDGDDNVKALFRQGQVSIIL  311 (312)
Q Consensus       291 l~l~p~~~Ka~~rrg~a~~~L  311 (312)
                      ++++|+++++|+++|.++..+
T Consensus        64 l~~~p~~~~~~~~~g~~~~~~   84 (117)
T d1elwa_          64 VDLKPDWGKGYSRKAAALEFL   84 (117)
T ss_dssp             HHHCTTCHHHHHHHHHHHHHT
T ss_pred             HHhccchhhHHHHHHHHHHHc
Confidence            999999999999999999876

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.59  E-value=1.5e-15  Score=121.30  Aligned_cols=88  Identities=22%  Similarity=0.320  Sum_probs=83.0

Q ss_pred             hhhhhhhhhhHhhhhhHHhhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHcCCHHHHHH
Q 021445          206 SWWMNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALL  285 (312)
Q Consensus       206 ~~~~~~~~~~k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~  285 (312)
                      +..++.|+.++++||.+|+.|+|++|+..|++||+                  ++|....+|.|+|.|++++|++++|+.
T Consensus         4 ~~~l~~a~~l~~~gn~~~~~~~y~~A~~~~~~al~------------------~~p~~~~~~~~lg~~~~~~~~~~~A~~   65 (159)
T d1a17a_           4 DGALKRAEELKTQANDYFKAKDYENAIKFYSQAIE------------------LNPSNAIYYGNRSLAYLRTECYGYALG   65 (159)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH------------------HSTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHcCCHHHHHHHhhhccc------------------cchhhhhhhhhhHHHHHhccccchHHH
Confidence            34568899999999999999999999999999999                  677889999999999999999999999


Q ss_pred             HHHHHHHcCCCchHHHHHHHHHhhhh
Q 021445          286 DTEFAMRDGDDNVKALFRQGQVSIIL  311 (312)
Q Consensus       286 ~~~~al~l~p~~~Ka~~rrg~a~~~L  311 (312)
                      ++++||+++|++++||+++|.++..+
T Consensus        66 ~~~kal~~~p~~~~a~~~~g~~~~~~   91 (159)
T d1a17a_          66 DATRAIELDKKYIKGYYRRAASNMAL   91 (159)
T ss_dssp             HHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHcccchHHHHHHHHHHHHc
Confidence            99999999999999999999999865

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.52  E-value=4.2e-15  Score=114.50  Aligned_cols=82  Identities=28%  Similarity=0.338  Sum_probs=72.4

Q ss_pred             hhhhhhHhhhhhHHhhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHcCCHHHHHHHHHH
Q 021445          210 NAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEF  289 (312)
Q Consensus       210 ~~~~~~k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~  289 (312)
                      +.|.++|+.||.+|+.|+|++|+.+|++||+                  +.|....++.|||.||.++++|++|+.+|++
T Consensus         2 ~~a~~~k~~G~~~~~~~~y~~Ai~~y~~al~------------------~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~   63 (128)
T d1elra_           2 KQALKEKELGNDAYKKKDFDTALKHYDKAKE------------------LDPTNMTYITNQAAVYFEKGDYNKCRELCEK   63 (128)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH------------------HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH------------------hCcccHHHHHhHHHHHHHcCchHHHHHHHHH
Confidence            3578899999999999999999999999999                  5666788999999999999999999999999


Q ss_pred             HHHcCCCchHHHHHHHHHhh
Q 021445          290 AMRDGDDNVKALFRQGQVSI  309 (312)
Q Consensus       290 al~l~p~~~Ka~~rrg~a~~  309 (312)
                      ||+++|.+..+|+..|++|.
T Consensus        64 al~l~~~~~~~~~~~a~~~~   83 (128)
T d1elra_          64 AIEVGRENREDYRQIAKAYA   83 (128)
T ss_dssp             HHHHHHHSTTCHHHHHHHHH
T ss_pred             HHHhCcccHHHHHHHHHHHH
Confidence            99999988765555555543

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.37  E-value=8.3e-13  Score=95.94  Aligned_cols=90  Identities=22%  Similarity=0.152  Sum_probs=75.8

Q ss_pred             hhhhhHhhhhhHHhhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHcCCHHHHHHHHHHH
Q 021445          211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA  290 (312)
Q Consensus       211 ~~~~~k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~a  290 (312)
                      .++.+.+.|+.+++.|+|.+|+..|++|++.....+.           ..+....+|.|+|.|+.++|+|++|+..+++|
T Consensus         4 saddc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~-----------~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~a   72 (95)
T d1tjca_           4 TAEDSFELGKVAYTEADYYHTELWMEQALRQLDEGEI-----------STIDKVSVLDYLSYAVYQQGDLDKALLLTKKL   72 (95)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCC-----------CSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhc-----------cCccHHHHHHHHhhHHHhcCChHHHHHHHHHH
Confidence            3566889999999999999999999999996543210           01234678999999999999999999999999


Q ss_pred             HHcCCCchHHHHHHHHHhhhh
Q 021445          291 MRDGDDNVKALFRQGQVSIIL  311 (312)
Q Consensus       291 l~l~p~~~Ka~~rrg~a~~~L  311 (312)
                      |+++|++..|++.++.....|
T Consensus        73 L~l~P~~~~a~~Nl~~~~~~l   93 (95)
T d1tjca_          73 LELDPEHQRANGNLKYFEYIM   93 (95)
T ss_dssp             HHHCTTCHHHHHHHHHHHHHH
T ss_pred             HHhCcCCHHHHHHHHHHHHHh
Confidence            999999999999998876554

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

Probab=99.25  E-value=1.5e-11  Score=97.22  Aligned_cols=97  Identities=10%  Similarity=-0.010  Sum_probs=77.7

Q ss_pred             hhhhhhhHhhhhhHHhhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHcCCHHHHHHHHH
Q 021445          209 MNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTE  288 (312)
Q Consensus       209 ~~~~~~~k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~  288 (312)
                      +..+..++.+|+..|..|+|++|+..|++||++....+.      .......+....+|.|+|.||.++|+|++|+.+++
T Consensus         6 ~a~a~~~l~~g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~------~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~   79 (156)
T d2hr2a1           6 VVGAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPP------EEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSAD   79 (156)
T ss_dssp             HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCT------TSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhChhhhh------hhhcccchhHHHHHHHHHHHHHHcCccchhhHhhh
Confidence            344556778899999999999999999999997544321      11122455667899999999999999999999999


Q ss_pred             HHHHcCC-----------CchHHHHHHHHHhhhh
Q 021445          289 FAMRDGD-----------DNVKALFRQGQVSIIL  311 (312)
Q Consensus       289 ~al~l~p-----------~~~Ka~~rrg~a~~~L  311 (312)
                      ++|++.|           ...++|+++|.+|..|
T Consensus        80 ~al~~~~~~~~~~~~~~~~~~~a~~~~g~~~~~l  113 (156)
T d2hr2a1          80 KALHYFNRRGELNQDEGKLWISAVYSRALALDGL  113 (156)
T ss_dssp             HHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHT
T ss_pred             hhhhcccccccccccccchhHHHHhhhHHHHHHH
Confidence            9998754           2467899999999875

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=99.24  E-value=1.4e-11  Score=92.06  Aligned_cols=82  Identities=6%  Similarity=-0.070  Sum_probs=75.9

Q ss_pred             hhhhHhhhhhHHhhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHcCCHHHHHHHHHHHH
Q 021445          212 VDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAM  291 (312)
Q Consensus       212 ~~~~k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al  291 (312)
                      .....+.|..++++|+|.+|+..|+++|.                  ..|....+|.++|.|+.+++++++|+.++.+||
T Consensus        16 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~------------------~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al   77 (112)
T d1hxia_          16 HENPMEEGLSMLKLANLAEAALAFEAVCQ------------------KEPEREEAWRSLGLTQAENEKDGLAIIALNHAR   77 (112)
T ss_dssp             CSCHHHHHHHHHHTTCHHHHHHHHHHHHH------------------HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhhHHHHHHHhhhcc------------------cccccchhhhhhhhhhhhhhhHHHhhccccccc
Confidence            44467889999999999999999999999                  667778899999999999999999999999999


Q ss_pred             HcCCCchHHHHHHHHHhhhh
Q 021445          292 RDGDDNVKALFRQGQVSIIL  311 (312)
Q Consensus       292 ~l~p~~~Ka~~rrg~a~~~L  311 (312)
                      +++|++..+|+.+|.+|..+
T Consensus        78 ~~~p~~~~a~~~la~~y~~~   97 (112)
T d1hxia_          78 MLDPKDIAVHAALAVSHTNE   97 (112)
T ss_dssp             HHCTTCHHHHHHHHHHHHHH
T ss_pred             ccccccccchHHHHHHHHHC
Confidence            99999999999999999764

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=99.16  E-value=3.1e-11  Score=102.09  Aligned_cols=83  Identities=12%  Similarity=0.047  Sum_probs=77.9

Q ss_pred             hhhhhHhhhhhHHhhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHcCCHHHHHHHHHHH
Q 021445          211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA  290 (312)
Q Consensus       211 ~~~~~k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~a  290 (312)
                      .+..+...|..+++.|+|++|+..|++||+                  ++|....+|.|+|.||.++|++++|+++++++
T Consensus        36 ~a~~~~~~G~~y~~~g~~~~A~~~~~~al~------------------l~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~a   97 (259)
T d1xnfa_          36 RAQLLYERGVLYDSLGLRALARNDFSQALA------------------IRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSV   97 (259)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH------------------HCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHhhc------------------cCCCCHHHHhhhchHHHHHHHHHHhhhhhhHH
Confidence            577789999999999999999999999999                  56667889999999999999999999999999


Q ss_pred             HHcCCCchHHHHHHHHHhhhh
Q 021445          291 MRDGDDNVKALFRQGQVSIIL  311 (312)
Q Consensus       291 l~l~p~~~Ka~~rrg~a~~~L  311 (312)
                      ++++|+++.+++.+|.+|..+
T Consensus        98 l~~~p~~~~a~~~lg~~~~~~  118 (259)
T d1xnfa_          98 LELDPTYNYAHLNRGIALYYG  118 (259)
T ss_dssp             HHHCTTCTHHHHHHHHHHHHT
T ss_pred             HHHHhhhhhhHHHHHHHHHHH
Confidence            999999999999999999765

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.13  E-value=3.7e-11  Score=98.45  Aligned_cols=80  Identities=19%  Similarity=0.115  Sum_probs=69.9

Q ss_pred             hhhhhHhhhhhHHhhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHcCCHHHHHHHHHHH
Q 021445          211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA  290 (312)
Q Consensus       211 ~~~~~k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~a  290 (312)
                      .+-.+.++|..++.+|+|++|++.|+++..                     ....++.|+|.||+++|+|++|++++++|
T Consensus         4 ~~~~l~~~g~~~~~~~d~~~Al~~~~~i~~---------------------~~~~~~~nlG~~~~~~g~~~~A~~~~~kA   62 (192)
T d1hh8a_           4 EAISLWNEGVLAADKKDWKGALDAFSAVQD---------------------PHSRICFNIGCMYTILKNMTEAEKAFTRS   62 (192)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHTSSS---------------------CCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHhcCC---------------------CCHHHHHHHHHHHHHcCCchhHHHHHHHH
Confidence            355677999999999999999999976422                     11347889999999999999999999999


Q ss_pred             HHcCCCchHHHHHHHHHhhhh
Q 021445          291 MRDGDDNVKALFRQGQVSIIL  311 (312)
Q Consensus       291 l~l~p~~~Ka~~rrg~a~~~L  311 (312)
                      |++||+++.+|+.+|.+|..+
T Consensus        63 l~ldp~~~~a~~~~g~~~~~~   83 (192)
T d1hh8a_          63 INRDKHLAVAYFQRGMLYYQT   83 (192)
T ss_dssp             HHHCTTCHHHHHHHHHHHHHT
T ss_pred             HHHhhhhhhhHHHHHHHHHhh
Confidence            999999999999999999876

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.05  E-value=2.8e-10  Score=85.33  Aligned_cols=80  Identities=15%  Similarity=0.045  Sum_probs=73.9

Q ss_pred             hhhhHhhhhhHHhhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHcCCHHHHHHHHHHHH
Q 021445          212 VDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAM  291 (312)
Q Consensus       212 ~~~~k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al  291 (312)
                      +..+...|+.+++.|+|++|+..|.++|+                  ++|....+|.|+|.|+.++|+|++|+.++.+++
T Consensus        37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~------------------~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~a~   98 (117)
T d1elwa_          37 HVLYSNRSAAYAKKGDYQKAYEDGCKTVD------------------LKPDWGKGYSRKAAALEFLNRFEEAKRTYEEGL   98 (117)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHH------------------HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             hhhhhcccccccccccccccchhhhhHHH------------------hccchhhHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence            45578999999999999999999999999                  667778899999999999999999999999999


Q ss_pred             HcCCCchHHHHHHHHHhh
Q 021445          292 RDGDDNVKALFRQGQVSI  309 (312)
Q Consensus       292 ~l~p~~~Ka~~rrg~a~~  309 (312)
                      +++|++..++..++.+..
T Consensus        99 ~~~p~~~~~~~~l~~l~~  116 (117)
T d1elwa_          99 KHEANNPQLKEGLQNMEA  116 (117)
T ss_dssp             TTCTTCHHHHHHHHHHHH
T ss_pred             HhCCCCHHHHHHHHHHhC
Confidence            999999999998887753

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.99  E-value=6.4e-10  Score=90.82  Aligned_cols=81  Identities=10%  Similarity=0.014  Sum_probs=72.8

Q ss_pred             hhhHhhhhhHHhhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHcCCHHHHHHHHHHHHH
Q 021445          213 DSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMR  292 (312)
Q Consensus       213 ~~~k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~  292 (312)
                      ..+.+.|+.+++.|+|++|+..|++||+                  ++|....+|.|||.||.++|+|++|+.+|++||.
T Consensus        37 ~~~~nlG~~~~~~g~~~~A~~~~~kAl~------------------ldp~~~~a~~~~g~~~~~~g~~~~A~~~~~kAl~   98 (192)
T d1hh8a_          37 RICFNIGCMYTILKNMTEAEKAFTRSIN------------------RDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALI   98 (192)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHH------------------HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCchhHHHHHHHHHH------------------HhhhhhhhHHHHHHHHHhhccHHHHHHHHHHHHH
Confidence            4578999999999999999999999999                  7788899999999999999999999999999998


Q ss_pred             cCCCc----------------hHHHHHHHHHhhhh
Q 021445          293 DGDDN----------------VKALFRQGQVSIIL  311 (312)
Q Consensus       293 l~p~~----------------~Ka~~rrg~a~~~L  311 (312)
                      ..+.+                ..++|.+|.++..+
T Consensus        99 ~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~  133 (192)
T d1hh8a_          99 QLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKK  133 (192)
T ss_dssp             TTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHT
T ss_pred             hCccCchHHHHHhhhhcccchHHHHHHHHHHHHHC
Confidence            76543                47889999988765

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=98.99  E-value=4.8e-10  Score=89.42  Aligned_cols=82  Identities=15%  Similarity=0.121  Sum_probs=73.7

Q ss_pred             hhhhHhhhhhHHhhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHcCCHHHHHHHHHHHH
Q 021445          212 VDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAM  291 (312)
Q Consensus       212 ~~~~k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al  291 (312)
                      +..+.+.|..+++.|+|++|+..|++||+                  ++|....+|.++|.||.++++|++|+.++.+||
T Consensus        77 ~~~~~nla~~~~~~~~~~~Ai~~~~~al~------------------~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al  138 (169)
T d1ihga1          77 LSCVLNIGACKLKMSDWQGAVDSCLEALE------------------IDPSNTKALYRRAQGWQGLKEYDQALADLKKAQ  138 (169)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHT------------------TCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhcccchhhhhhhhhhh------------------hhhhhhhHHHhHHHHHHHccCHHHHHHHHHHHH
Confidence            44456789999999999999999999999                  567778899999999999999999999999999


Q ss_pred             HcCCCchHHHHHHHHHhhhh
Q 021445          292 RDGDDNVKALFRQGQVSIIL  311 (312)
Q Consensus       292 ~l~p~~~Ka~~rrg~a~~~L  311 (312)
                      +++|++..++...+.+...+
T Consensus       139 ~l~p~n~~~~~~l~~~~~~l  158 (169)
T d1ihga1         139 EIAPEDKAIQAELLKVKQKI  158 (169)
T ss_dssp             HHCTTCHHHHHHHHHHHHHH
T ss_pred             HhCCCCHHHHHHHHHHHHHH
Confidence            99999999998888887654

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=98.95  E-value=1.1e-09  Score=85.94  Aligned_cols=82  Identities=16%  Similarity=0.101  Sum_probs=74.4

Q ss_pred             hhhhHhhhhhHHhhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHcCCHHHHHHHHHHHH
Q 021445          212 VDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAM  291 (312)
Q Consensus       212 ~~~~k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al  291 (312)
                      +..+.+.|..+++.++|.+|+..|++||+                  ++|....+|.++|.||.++|+|++|+.++.+++
T Consensus        67 ~~~~~Nla~~~~~l~~~~~Al~~~~~al~------------------~~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al  128 (153)
T d2fbna1          67 ISCNLNLATCYNKNKDYPKAIDHASKVLK------------------IDKNNVKALYKLGVANMYFGFLEEAKENLYKAA  128 (153)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHH------------------HSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             HHHHhhHHHHHHHhcccchhhhhhhcccc------------------ccchhhhhhHHhHHHHHHcCCHHHHHHHHHHHH
Confidence            34456899999999999999999999999                  677788899999999999999999999999999


Q ss_pred             HcCCCchHHHHHHHHHhhhh
Q 021445          292 RDGDDNVKALFRQGQVSIIL  311 (312)
Q Consensus       292 ~l~p~~~Ka~~rrg~a~~~L  311 (312)
                      +++|+|..+....+.+...|
T Consensus       129 ~l~P~n~~~~~~l~~~~~kl  148 (153)
T d2fbna1         129 SLNPNNLDIRNSYELCVNKL  148 (153)
T ss_dssp             HHSTTCHHHHHHHHHHHHHH
T ss_pred             HhCCCCHHHHHHHHHHHHHH
Confidence            99999999998888877654

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.91  E-value=4e-09  Score=85.06  Aligned_cols=103  Identities=13%  Similarity=-0.002  Sum_probs=86.8

Q ss_pred             hhhhhhhHhhhhhHHhhhcHHHHHHHHHHHHHHhhhcccc----CCCCchhhhHHHHHHHHHHhHHHHHHHHcCCHHHHH
Q 021445          209 MNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEK----EGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGAL  284 (312)
Q Consensus       209 ~~~~~~~k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~~----~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai  284 (312)
                      +...+.+.+.|+.++..|++++|+..|.+||.+.......    ...-.++...+.+....++.+++.+++++|+|++|+
T Consensus         8 ~~~f~~~~~~g~~~~~~g~~e~A~~~~~~AL~l~rG~~l~~~~~~~w~~~~r~~l~~~~~~a~~~la~~~~~~g~~~~Al   87 (179)
T d2ff4a2           8 LGRFVAEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVI   87 (179)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHH
Confidence            3456778999999999999999999999999975443221    122233445678889999999999999999999999


Q ss_pred             HHHHHHHHcCCCchHHHHHHHHHhhhh
Q 021445          285 LDTEFAMRDGDDNVKALFRQGQVSIIL  311 (312)
Q Consensus       285 ~~~~~al~l~p~~~Ka~~rrg~a~~~L  311 (312)
                      .+|.++|+++|.+..+|..++.+|..+
T Consensus        88 ~~~~~al~~~P~~e~~~~~l~~al~~~  114 (179)
T d2ff4a2          88 AELEALTFEHPYREPLWTQLITAYYLS  114 (179)
T ss_dssp             HHHHHHHHHSTTCHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHhCCccHHHHHHHHHHHHHh
Confidence            999999999999999999999999764

>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondrial import receptor subunit tom20-3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=98.90  E-value=7.2e-10  Score=86.41  Aligned_cols=76  Identities=12%  Similarity=0.062  Sum_probs=67.6

Q ss_pred             hhhhHHhhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHc----------CCHHHHHHHH
Q 021445          218 FGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKL----------GDLKGALLDT  287 (312)
Q Consensus       218 ~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl----------~~~~~Ai~~~  287 (312)
                      .+..+-+.+.|++|+..|++||+                  ++|....++.|+|.+++.+          +.+++|+..+
T Consensus         3 ~~~~~~r~~~fe~A~~~~e~al~------------------~~P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~   64 (145)
T d1zu2a1           3 TETEFDRILLFEQIRQDAENTYK------------------SNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKF   64 (145)
T ss_dssp             CCCSHHHHHHHHHHHHHHHHHHH------------------HCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHccHHHHHHHHHHHHh------------------hCCcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHH
Confidence            35567778899999999999999                  7888899999999999965          4568999999


Q ss_pred             HHHHHcCCCchHHHHHHHHHhhhh
Q 021445          288 EFAMRDGDDNVKALFRQGQVSIIL  311 (312)
Q Consensus       288 ~~al~l~p~~~Ka~~rrg~a~~~L  311 (312)
                      ++||+++|+++.+|+.+|.+|..+
T Consensus        65 ~kAl~l~P~~~~a~~~lG~~y~~~   88 (145)
T d1zu2a1          65 EEALLIDPKKDEAVWCIGNAYTSF   88 (145)
T ss_dssp             HHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHhcchhhHHHhhHHHHHHHc
Confidence            999999999999999999998653

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=98.90  E-value=2.5e-09  Score=85.19  Aligned_cols=82  Identities=16%  Similarity=0.100  Sum_probs=73.7

Q ss_pred             hhhhHhhhhhHHhhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHcCCHHHHHHHHHHHH
Q 021445          212 VDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAM  291 (312)
Q Consensus       212 ~~~~k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al  291 (312)
                      +..+.+.|..+++.++|.+|+..|+++|.                  ++|....+|.++|.||..+|+|++|+.++.+++
T Consensus        64 ~~~~~Nla~~~~~l~~~~~Ai~~~~~al~------------------l~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al  125 (168)
T d1kt1a1          64 LAAFLNLAMCYLKLREYTKAVECCDKALG------------------LDSANEKGLYRRGEAQLLMNEFESAKGDFEKVL  125 (168)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHH------------------HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHhHHHHHHHhhhcccchhhhhhhhh------------------cccchHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            34456789999999999999999999999                  677788999999999999999999999999999


Q ss_pred             HcCCCchHHHHHHHHHhhhh
Q 021445          292 RDGDDNVKALFRQGQVSIIL  311 (312)
Q Consensus       292 ~l~p~~~Ka~~rrg~a~~~L  311 (312)
                      +++|++..++..++.+...+
T Consensus       126 ~l~P~n~~~~~~l~~~~~~~  145 (168)
T d1kt1a1         126 EVNPQNKAARLQIFMCQKKA  145 (168)
T ss_dssp             HSCTTCHHHHHHHHHHHHHH
T ss_pred             HhCCCCHHHHHHHHHHHHHH
Confidence            99999999988888776543

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.86  E-value=3.6e-09  Score=84.44  Aligned_cols=80  Identities=19%  Similarity=0.133  Sum_probs=72.8

Q ss_pred             hhhHhhhhhHHhhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHcCCHHHHHHHHHHHHH
Q 021445          213 DSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMR  292 (312)
Q Consensus       213 ~~~k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~  292 (312)
                      ..+.+.|..+++.|+|.+|+..|++||.                  ++|....+|.++|.||.++|+|++|+.++.+|++
T Consensus        63 ~~~~nla~~y~k~~~~~~A~~~~~~al~------------------~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~  124 (170)
T d1p5qa1          63 ASHLNLAMCHLKLQAFSAAIESCNKALE------------------LDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQ  124 (170)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHH------------------HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhhhcccccchhhhhhh------------------ccccchhhhHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence            3456789999999999999999999999                  6777888999999999999999999999999999


Q ss_pred             cCCCchHHHHHHHHHhhh
Q 021445          293 DGDDNVKALFRQGQVSII  310 (312)
Q Consensus       293 l~p~~~Ka~~rrg~a~~~  310 (312)
                      ++|++..+....+.++..
T Consensus       125 l~P~n~~~~~~l~~~~~~  142 (170)
T d1p5qa1         125 LYPNNKAAKTQLAVCQQR  142 (170)
T ss_dssp             HCSSCHHHHHHHHHHHHH
T ss_pred             hCCCCHHHHHHHHHHHHH
Confidence            999999999888887654

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.85  E-value=3.3e-09  Score=83.47  Aligned_cols=81  Identities=17%  Similarity=0.167  Sum_probs=73.7

Q ss_pred             hhhhhHhhhhhHHhhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHcCCHHHHHHHHHHH
Q 021445          211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA  290 (312)
Q Consensus       211 ~~~~~k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~a  290 (312)
                      .+..+...|..+++.|++++|+..|.+||+                  ++|....+|.++|.|+..+|+|++|+.++.++
T Consensus        43 ~~~~~~~lg~~~~~~~~~~~A~~~~~kal~------------------~~p~~~~a~~~~g~~~~~~g~~~eA~~~~~~a  104 (159)
T d1a17a_          43 NAIYYGNRSLAYLRTECYGYALGDATRAIE------------------LDKKYIKGYYRRAASNMALGKFRAALRDYETV  104 (159)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH------------------HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             hhhhhhhhHHHHHhccccchHHHHHHHHHH------------------HcccchHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            355578999999999999999999999999                  67778889999999999999999999999999


Q ss_pred             HHcCCCchHHHHHHHHHhh
Q 021445          291 MRDGDDNVKALFRQGQVSI  309 (312)
Q Consensus       291 l~l~p~~~Ka~~rrg~a~~  309 (312)
                      ++++|++..++...+.+..
T Consensus       105 ~~~~p~~~~~~~~l~~~~~  123 (159)
T d1a17a_         105 VKVKPHDKDAKMKYQECNK  123 (159)
T ss_dssp             HHHSTTCHHHHHHHHHHHH
T ss_pred             HHcCCCCHHHHHHHHHHHH
Confidence            9999999999888776653

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.84  E-value=5.5e-09  Score=78.81  Aligned_cols=51  Identities=10%  Similarity=0.032  Sum_probs=45.3

Q ss_pred             HHHHHHHhHHHHHHHHcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHhhhh
Q 021445          261 KTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQVSIIL  311 (312)
Q Consensus       261 ~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~l~p~~~Ka~~rrg~a~~~L  311 (312)
                      +....++.|+|.||.++|+|++|+++++++|+++|++.+|+.-++.+...+
T Consensus        69 ~~~~~~~~~Lg~~y~~~g~~~~A~~~~~~aL~~~P~~~~A~~l~~~I~~~~  119 (122)
T d1nzna_          69 EEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAKELERLIDKAM  119 (122)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHH
Confidence            444668999999999999999999999999999999999999888776543

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.84  E-value=2.3e-09  Score=93.96  Aligned_cols=78  Identities=14%  Similarity=0.135  Sum_probs=71.9

Q ss_pred             HhhhhhHHhhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHcCCHHHHHHHHHHHHHcCC
Q 021445          216 KVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGD  295 (312)
Q Consensus       216 k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~l~p  295 (312)
                      .+.|+.+|+.|+|++|+..|+++++                  ..|....++.++|.+|+++|+|++|+..+.++++++|
T Consensus         3 l~la~~~~~~G~~~~A~~~~~~~l~------------------~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p   64 (388)
T d1w3ba_           3 MELAHREYQAGDFEAAERHCMQLWR------------------QEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNP   64 (388)
T ss_dssp             CTHHHHHHHHTCHHHHHHHHHHHHH------------------HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHH------------------hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence            4679999999999999999999998                  4455677899999999999999999999999999999


Q ss_pred             CchHHHHHHHHHhhhh
Q 021445          296 DNVKALFRQGQVSIIL  311 (312)
Q Consensus       296 ~~~Ka~~rrg~a~~~L  311 (312)
                      +++.+|+.+|.+|..+
T Consensus        65 ~~~~a~~~l~~~~~~~   80 (388)
T d1w3ba_          65 LLAEAYSNLGNVYKER   80 (388)
T ss_dssp             TCHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHhhhh
Confidence            9999999999998764

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.83  E-value=2.9e-09  Score=92.51  Aligned_cols=79  Identities=11%  Similarity=-0.026  Sum_probs=73.4

Q ss_pred             hHhhhhhHHhhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 021445          215 IKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDG  294 (312)
Q Consensus       215 ~k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~l~  294 (312)
                      ..++|..+++.|+|++|+..|+++|+                  .+|....+|.++|.|+.++|++++|+..+++|++++
T Consensus        22 ~~~~g~~~~~~g~~~~A~~~~~~al~------------------~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~   83 (323)
T d1fcha_          22 PFEEGLRRLQEGDLPNAVLLFEAAVQ------------------QDPKHMEAWQYLGTTQAENEQELLAISALRRCLELK   83 (323)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHH------------------SCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHH------------------hCCCCHHHHHHHHHHHHHcCChHHHHHHHHhhhccc
Confidence            46899999999999999999999999                  556667899999999999999999999999999999


Q ss_pred             CCchHHHHHHHHHhhhh
Q 021445          295 DDNVKALFRQGQVSIIL  311 (312)
Q Consensus       295 p~~~Ka~~rrg~a~~~L  311 (312)
                      |++..+|+.+|.+|..+
T Consensus        84 p~~~~~~~~la~~~~~~  100 (323)
T d1fcha_          84 PDNQTALMALAVSFTNE  100 (323)
T ss_dssp             TTCHHHHHHHHHHHHHT
T ss_pred             ccccccccccccccccc
Confidence            99999999999998754

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.83  E-value=1.6e-09  Score=95.02  Aligned_cols=81  Identities=22%  Similarity=0.225  Sum_probs=68.5

Q ss_pred             hhHhhhhhHHhhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHcCCHHHHHHHHHHHHHc
Q 021445          214 SIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRD  293 (312)
Q Consensus       214 ~~k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~l  293 (312)
                      .+...|..+++.|+|++|+..|+++|+                  +.|....++.|+|.+|.++|++++|+..+++||++
T Consensus       307 ~~~~l~~~~~~~~~~~~A~~~~~~al~------------------~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l  368 (388)
T d1w3ba_         307 SLNNLANIKREQGNIEEAVRLYRKALE------------------VFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI  368 (388)
T ss_dssp             HHHHHHHHHHTTTCHHHHHHHHHHHTT------------------SCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTT
T ss_pred             hhhHHHHHHHHCCCHHHHHHHHHHHHH------------------hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            345566777777777777777777776                  34555778999999999999999999999999999


Q ss_pred             CCCchHHHHHHHHHhhhhC
Q 021445          294 GDDNVKALFRQGQVSIILL  312 (312)
Q Consensus       294 ~p~~~Ka~~rrg~a~~~L~  312 (312)
                      +|+++.+|+.+|.+|..|.
T Consensus       369 ~P~~~~a~~~lg~~~~~~~  387 (388)
T d1w3ba_         369 SPTFADAYSNMGNTLKEMQ  387 (388)
T ss_dssp             CTTCHHHHHHHHHHHHHTC
T ss_pred             CCCCHHHHHHHHHHHHHcC
Confidence            9999999999999998763

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.76  E-value=9.7e-09  Score=89.13  Aligned_cols=81  Identities=16%  Similarity=0.143  Sum_probs=73.7

Q ss_pred             hhhHhhhhhHHhhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHcCCHHHHHHHHHHHHH
Q 021445          213 DSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMR  292 (312)
Q Consensus       213 ~~~k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~  292 (312)
                      ..+...|..++..|++++|+..|++++.                  ..|....+|.++|.++.++|++++|++.+.++++
T Consensus       173 ~~~~~l~~~~~~~~~~~~A~~~~~~al~------------------~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~  234 (323)
T d1fcha_         173 DVQCGLGVLFNLSGEYDKAVDCFTAALS------------------VRPNDYLLWNKLGATLANGNQSEEAVAAYRRALE  234 (323)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHH------------------HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             ccchhhHHHHHHHHHHhhhhcccccccc------------------cccccccchhhhhhcccccccchhHHHHHHHHHH
Confidence            3466789999999999999999999998                  4555677999999999999999999999999999


Q ss_pred             cCCCchHHHHHHHHHhhhh
Q 021445          293 DGDDNVKALFRQGQVSIIL  311 (312)
Q Consensus       293 l~p~~~Ka~~rrg~a~~~L  311 (312)
                      ++|+++.+|+.+|.+|..+
T Consensus       235 ~~p~~~~a~~~lg~~~~~~  253 (323)
T d1fcha_         235 LQPGYIRSRYNLGISCINL  253 (323)
T ss_dssp             HCTTCHHHHHHHHHHHHHH
T ss_pred             HhhccHHHHHHHHHHHHHC
Confidence            9999999999999999865

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.74  E-value=1.6e-08  Score=88.62  Aligned_cols=81  Identities=11%  Similarity=0.090  Sum_probs=48.0

Q ss_pred             hhhhhHhhhhhHHhhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHcCC-HHHHHHHHHH
Q 021445          211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGD-LKGALLDTEF  289 (312)
Q Consensus       211 ~~~~~k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~-~~~Ai~~~~~  289 (312)
                      -++.+-..|..+.+.+++++|+..|++||+                  ++|....+|.||+.|+.++++ +++|+.++++
T Consensus        42 ~~~a~~~~~~~~~~~e~~~~Al~~~~~ai~------------------lnP~~~~a~~~r~~~l~~l~~~~~eal~~~~~  103 (315)
T d2h6fa1          42 FRDVYDYFRAVLQRDERSERAFKLTRDAIE------------------LNAANYTVWHFRRVLLKSLQKDLHEEMNYITA  103 (315)
T ss_dssp             HHHHHHHHHHHHHHTCCCHHHHHHHHHHHH------------------HCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCchHHHHHHHHHHHH------------------HCCCChHHHHHHHHHHHHhCcCHHHHHHHHHH
Confidence            344555667777788888888888888887                  444444555555555555442 4555555555


Q ss_pred             HHHcCCCchHHHHHHHHHhh
Q 021445          290 AMRDGDDNVKALFRQGQVSI  309 (312)
Q Consensus       290 al~l~p~~~Ka~~rrg~a~~  309 (312)
                      +|+++|++..+|+.||.++.
T Consensus       104 al~~~p~~~~a~~~~~~~~~  123 (315)
T d2h6fa1         104 IIEEQPKNYQVWHHRRVLVE  123 (315)
T ss_dssp             HHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHhhhhHHHHHhHHHH
Confidence            55555555555555554444

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.71  E-value=8.9e-09  Score=90.34  Aligned_cols=81  Identities=11%  Similarity=-0.060  Sum_probs=53.5

Q ss_pred             hhhhHhhhhhHHhhh-cHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHcCCHHHHHHHHHHH
Q 021445          212 VDSIKVFGNEHYKKQ-DYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA  290 (312)
Q Consensus       212 ~~~~k~~Gn~~~~~~-~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~a  290 (312)
                      ...+..+|+.+...+ ++++|+..|.++|+                  ++|....+|.||+.++.++|++++|+++++++
T Consensus        77 ~~a~~~r~~~l~~l~~~~~eal~~~~~al~------------------~~p~~~~a~~~~~~~~~~l~~~~eAl~~~~ka  138 (315)
T d2h6fa1          77 YTVWHFRRVLLKSLQKDLHEEMNYITAIIE------------------EQPKNYQVWHHRRVLVEWLRDPSQELEFIADI  138 (315)
T ss_dssp             HHHHHHHHHHHHHTTCCHHHHHHHHHHHHH------------------HCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHH
T ss_pred             hHHHHHHHHHHHHhCcCHHHHHHHHHHHHH------------------HHHhhhhHHHHHhHHHHhhccHHHHHHHHhhh
Confidence            445678888888866 58999999999998                  44455555556666666666666666666666


Q ss_pred             HHcCCCchHHHHHHHHHhhh
Q 021445          291 MRDGDDNVKALFRQGQVSII  310 (312)
Q Consensus       291 l~l~p~~~Ka~~rrg~a~~~  310 (312)
                      ++++|++..+|+.+|.++..
T Consensus       139 l~~dp~n~~a~~~~~~~~~~  158 (315)
T d2h6fa1         139 LNQDAKNYHAWQHRQWVIQE  158 (315)
T ss_dssp             HHHCTTCHHHHHHHHHHHHH
T ss_pred             hhhhhcchHHHHHHHHHHHH
Confidence            66666555565555555544

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.70  E-value=5.3e-09  Score=78.91  Aligned_cols=79  Identities=13%  Similarity=0.122  Sum_probs=69.1

Q ss_pred             hHhhhhhHHhhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHcC---CHHHHHHHHHHHH
Q 021445          215 IKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLG---DLKGALLDTEFAM  291 (312)
Q Consensus       215 ~k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~---~~~~Ai~~~~~al  291 (312)
                      +-+..|.++..++|++|.+.|++||.                  ++|....++.|+|.|+++.+   ++++|+..++++|
T Consensus         2 ~~~l~n~~~~~~~l~~Ae~~Y~~aL~------------------~~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l   63 (122)
T d1nzna_           2 MEAVLNELVSVEDLLKFEKKFQSEKA------------------AGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELL   63 (122)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHH------------------HSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHhcCHHHHHHHHHHHHHHHh------------------hCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHH
Confidence            34678899999999999999999999                  67778889999999999754   5668999999999


Q ss_pred             HcCCCc--hHHHHHHHHHhhhh
Q 021445          292 RDGDDN--VKALFRQGQVSIIL  311 (312)
Q Consensus       292 ~l~p~~--~Ka~~rrg~a~~~L  311 (312)
                      ..+|.+  +.+||..|.+|..+
T Consensus        64 ~~~~~~~~~~~~~~Lg~~y~~~   85 (122)
T d1nzna_          64 PKGSKEEQRDYVFYLAVGNYRL   85 (122)
T ss_dssp             TTSCHHHHHHHHHHHHHHHHHT
T ss_pred             hccCCchHHHHHHHHHHHHHHH
Confidence            999866  45999999999875

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.64  E-value=3.1e-09  Score=86.04  Aligned_cols=70  Identities=17%  Similarity=0.114  Sum_probs=63.0

Q ss_pred             hhhhhHhhhhhHHhhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHcCCHHHHHHHHHHH
Q 021445          211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA  290 (312)
Q Consensus       211 ~~~~~k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~a  290 (312)
                      .+..+...|..+++.|+|++|+..|++||+                  ++|....+|.|+|.||+++|+|++|+.++.+|
T Consensus        37 ~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~------------------l~p~~~~a~~~lg~~~~~l~~~~~A~~~~~~a   98 (201)
T d2c2la1          37 VAVYYTNRALCYLKMQQPEQALADCRRALE------------------LDGQSVKAHFFLGQCQLEMESYDEAIANLQRA   98 (201)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHTT------------------SCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             CHHHHHhHHHHHhhhhhhhhhhHHHHHHHH------------------hCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence            355678999999999999999999999999                  56677889999999999999999999999999


Q ss_pred             HHcCCCch
Q 021445          291 MRDGDDNV  298 (312)
Q Consensus       291 l~l~p~~~  298 (312)
                      ++++|.+.
T Consensus        99 l~l~p~~~  106 (201)
T d2c2la1          99 YSLAKEQR  106 (201)
T ss_dssp             HHHHHHTT
T ss_pred             HHhCcccH
Confidence            99987543

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=98.59  E-value=5.4e-08  Score=81.44  Aligned_cols=82  Identities=13%  Similarity=-0.001  Sum_probs=73.6

Q ss_pred             hhhhhHhhhhhHHhhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHcCCHHHHHHHHHHH
Q 021445          211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA  290 (312)
Q Consensus       211 ~~~~~k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~a  290 (312)
                      .+..+...|..+.+.|+|++|+..|++|++                  ++|....++.|+|.++..+|++++|+..+.++
T Consensus        70 ~~~a~~~lg~~~~~~g~~~~A~~~~~~al~------------------~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~a  131 (259)
T d1xnfa_          70 MPEVFNYLGIYLTQAGNFDAAYEAFDSVLE------------------LDPTYNYAHLNRGIALYYGGRDKLAQDDLLAF  131 (259)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH------------------HCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             CHHHHhhhchHHHHHHHHHHhhhhhhHHHH------------------HHhhhhhhHHHHHHHHHHHhhHHHHHHHHHHH
Confidence            355678999999999999999999999999                  56666779999999999999999999999999


Q ss_pred             HHcCCCchHHHHHHHHHhhh
Q 021445          291 MRDGDDNVKALFRQGQVSII  310 (312)
Q Consensus       291 l~l~p~~~Ka~~rrg~a~~~  310 (312)
                      ++++|.+..++...+.++..
T Consensus       132 l~~~p~~~~~~~~~~~~~~~  151 (259)
T d1xnfa_         132 YQDDPNDPFRSLWLYLAEQK  151 (259)
T ss_dssp             HHHCTTCHHHHHHHHHHHHH
T ss_pred             HhhccccHHHHHHHHHHHHH
Confidence            99999999988887776654

>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondrial import receptor subunit tom20-3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=98.46  E-value=1.2e-07  Score=73.27  Aligned_cols=81  Identities=17%  Similarity=0.142  Sum_probs=67.4

Q ss_pred             hhhhHhhhhhHHh----------hhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHcC---
Q 021445          212 VDSIKVFGNEHYK----------KQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLG---  278 (312)
Q Consensus       212 ~~~~k~~Gn~~~~----------~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~---  278 (312)
                      +..+...|..++.          .+.+++|+..|++||+                  ++|....+|.|+|.+|..++   
T Consensus        31 ~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~------------------l~P~~~~a~~~lG~~y~~~g~~~   92 (145)
T d1zu2a1          31 ADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALL------------------IDPKKDEAVWCIGNAYTSFAFLT   92 (145)
T ss_dssp             HHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHH------------------HCTTCHHHHHHHHHHHHHHHHHC
T ss_pred             hHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHH------------------hcchhhHHHhhHHHHHHHcccch
Confidence            4456777777774          4566899999999999                  77888899999999999876   


Q ss_pred             --------CHHHHHHHHHHHHHcCCCchHHHHHHHHHhhh
Q 021445          279 --------DLKGALLDTEFAMRDGDDNVKALFRQGQVSII  310 (312)
Q Consensus       279 --------~~~~Ai~~~~~al~l~p~~~Ka~~rrg~a~~~  310 (312)
                              .|++|++.+.+||+++|++..++...+.+...
T Consensus        93 ~~~~~~~~~~~~A~~~~~kal~l~P~~~~~~~~L~~~~ka  132 (145)
T d1zu2a1          93 PDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLEMTAKA  132 (145)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTH
T ss_pred             hhHHHHHHhHHHhhhhhhcccccCCCHHHHHHHHHHHHHH
Confidence                    47999999999999999999888877776543

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

Probab=98.37  E-value=2.8e-07  Score=71.86  Aligned_cols=79  Identities=14%  Similarity=0.014  Sum_probs=64.0

Q ss_pred             hhhhhHhhhhhHHhhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHcCCHHHHHHHHHHH
Q 021445          211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA  290 (312)
Q Consensus       211 ~~~~~k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~a  290 (312)
                      .+..+.+.|..+++.|+|++|+..|+++|.+.......       .....+....+|.|+|.||.++|++++|+.++.+|
T Consensus        54 ~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~-------~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~A  126 (156)
T d2hr2a1          54 DAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGEL-------NQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKV  126 (156)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCT-------TSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCccchhhHhhhhhhhcccccccc-------cccccchhHHHHhhhHHHHHHHHHHHHHHHHHHHH
Confidence            45667899999999999999999999999976542111       11134556778999999999999999999999999


Q ss_pred             HHcCCC
Q 021445          291 MRDGDD  296 (312)
Q Consensus       291 l~l~p~  296 (312)
                      +++.|.
T Consensus       127 l~l~~~  132 (156)
T d2hr2a1         127 VEMIEE  132 (156)
T ss_dssp             HHHHHH
T ss_pred             HHhhHH
Confidence            988653

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]}

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=98.28  E-value=4.8e-07  Score=77.07  Aligned_cols=75  Identities=8%  Similarity=-0.037  Sum_probs=69.0

Q ss_pred             hhhhHHhhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHcCCHHHHHHHHHHHHHcCCCc
Q 021445          218 FGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDN  297 (312)
Q Consensus       218 ~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~l~p~~  297 (312)
                      ++..++++|++++|+..|+++|+                  .+|....++.+++.++..+|+|++|+..++++++++|++
T Consensus         2 q~~~aL~~G~l~eAl~~l~~al~------------------~~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~P~~   63 (264)
T d1zbpa1           2 QWKNALSEGQLQQALELLIEAIK------------------ASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEY   63 (264)
T ss_dssp             CHHHHTTTTCHHHHHHHHHHHHH------------------TCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGG
T ss_pred             hHHHHHHCCCHHHHHHHHHHHHH------------------HCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCc
Confidence            46788999999999999999999                  678888999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHhhh
Q 021445          298 VKALFRQGQVSII  310 (312)
Q Consensus       298 ~Ka~~rrg~a~~~  310 (312)
                      ..++...+.++..
T Consensus        64 ~~~~~~l~~ll~a   76 (264)
T d1zbpa1          64 LPGASQLRHLVKA   76 (264)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHh
Confidence            9999888877653

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=98.23  E-value=5.1e-07  Score=66.37  Aligned_cols=63  Identities=10%  Similarity=0.080  Sum_probs=58.0

Q ss_pred             hhhhhHhhhhhHHhhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHcCCHHHHHHHHHHH
Q 021445          211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA  290 (312)
Q Consensus       211 ~~~~~k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~a  290 (312)
                      .+..+...|..+.+.+++++|+..|++||+                  ++|....++.++|.||.++|++++|++..+++
T Consensus        49 ~~~a~~~lg~~~~~~~~~~~A~~~~~~al~------------------~~p~~~~a~~~la~~y~~~g~~~~A~~~l~~~  110 (112)
T d1hxia_          49 REEAWRSLGLTQAENEKDGLAIIALNHARM------------------LDPKDIAVHAALAVSHTNEHNANAALASLRAW  110 (112)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH------------------HCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cchhhhhhhhhhhhhhhHHHhhcccccccc------------------cccccccchHHHHHHHHHCCCHHHHHHHHHHH
Confidence            355678899999999999999999999999                  67778889999999999999999999999998


Q ss_pred             H
Q 021445          291 M  291 (312)
Q Consensus       291 l  291 (312)
                      |
T Consensus       111 l  111 (112)
T d1hxia_         111 L  111 (112)
T ss_dssp             H
T ss_pred             h
Confidence            7

>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.22  E-value=2.2e-06  Score=63.67  Aligned_cols=48  Identities=13%  Similarity=0.004  Sum_probs=42.3

Q ss_pred             HHHHHhHHHHHHHHcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHhhh
Q 021445          263 KSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQVSII  310 (312)
Q Consensus       263 ~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~l~p~~~Ka~~rrg~a~~~  310 (312)
                      ...++.++|.+|+++|+|++|+++|+++|+++|+|..|..-+-.+..+
T Consensus        72 ~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ieP~n~qA~~L~~~Ie~~  119 (124)
T d2pqrb1          72 RRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGALKSMVEDK  119 (124)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhhHHHHHHHHHHHHccCCCcHHHHHHHHHHHHH
Confidence            357999999999999999999999999999999999998777655443

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.17  E-value=7.8e-06  Score=61.18  Aligned_cols=85  Identities=13%  Similarity=0.061  Sum_probs=66.7

Q ss_pred             hhhhhHhhhhhHHhhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHcCCHHHHHHHHHHH
Q 021445          211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA  290 (312)
Q Consensus       211 ~~~~~k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~a  290 (312)
                      .+..+.+.|+.+++.|+|++|+..|++||++-...           .........+|.++|.++..+++|++|++++.++
T Consensus        37 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~-----------~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~ka  105 (128)
T d1elra_          37 NMTYITNQAAVYFEKGDYNKCRELCEKAIEVGREN-----------REDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKS  105 (128)
T ss_dssp             CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHS-----------TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             cHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCccc-----------HHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence            35568899999999999999999999999853221           1123455678999999999999999999999999


Q ss_pred             HHcCCCchHHHHHHHHH
Q 021445          291 MRDGDDNVKALFRQGQV  307 (312)
Q Consensus       291 l~l~p~~~Ka~~rrg~a  307 (312)
                      +..+++ ...+.....+
T Consensus       106 l~~~~~-~~~~~~l~~~  121 (128)
T d1elra_         106 LAEHRT-PDVLKKCQQA  121 (128)
T ss_dssp             HHHCCC-HHHHHHHHHH
T ss_pred             HhcCCC-HHHHHHHHHH
Confidence            999874 4455444443

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.11  E-value=2.5e-06  Score=79.05  Aligned_cols=81  Identities=12%  Similarity=0.000  Sum_probs=75.3

Q ss_pred             hhhhHhhhhhHHhhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHcCCHHHHHHHHHHHH
Q 021445          212 VDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAM  291 (312)
Q Consensus       212 ~~~~k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al  291 (312)
                      ...+...|+.+...++|++|+..|.+|++                  +.|....+|.|+|.++.+.|++.+|+.++.+||
T Consensus       152 ~~~~~~LG~l~~~~~~~~~A~~~y~~A~~------------------l~P~~~~~~~~Lg~~~~~~~~~~~A~~~y~ral  213 (497)
T d1ya0a1         152 QHCLVHLGDIARYRNQTSQAESYYRHAAQ------------------LVPSNGQPYNQLAILASSKGDHLTTIFYYCRSI  213 (497)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHH------------------HCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcccHHHHHHHHHHHHH------------------HCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            45678899999999999999999999999                  677788899999999999999999999999999


Q ss_pred             HcCCCchHHHHHHHHHhhh
Q 021445          292 RDGDDNVKALFRQGQVSII  310 (312)
Q Consensus       292 ~l~p~~~Ka~~rrg~a~~~  310 (312)
                      .++|.++.|+...+.++..
T Consensus       214 ~~~~~~~~a~~nL~~~~~~  232 (497)
T d1ya0a1         214 AVKFPFPAASTNLQKALSK  232 (497)
T ss_dssp             SSSBCCHHHHHHHHHHHHH
T ss_pred             hCCCCCHHHHHHHHHHHHH
Confidence            9999999999999988754

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.10  E-value=4e-06  Score=71.69  Aligned_cols=87  Identities=15%  Similarity=0.094  Sum_probs=70.2

Q ss_pred             hhhhhHhhhhhHHhhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHcCCHHHHHHHHHHH
Q 021445          211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA  290 (312)
Q Consensus       211 ~~~~~k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~a  290 (312)
                      .++.+.+-|+.+...++|++|+..|.+|+++.....            ..+....+|.|+|.||.+++++++|++.+.++
T Consensus        36 Aa~~y~~aa~~y~~~~~~~~A~~~y~kA~~~~~~~~------------~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a  103 (290)
T d1qqea_          36 AADLCVQAATIYRLRKELNLAGDSFLKAADYQKKAG------------NEDEAGNTYVEAYKCFKSGGNSVNAVDSLENA  103 (290)
T ss_dssp             HHHHHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTT------------CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcC------------CCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHh
Confidence            466678889999999999999999999999643310            13445789999999999999999999999999


Q ss_pred             HHcCCCc------hHHHHHHHHHhh
Q 021445          291 MRDGDDN------VKALFRQGQVSI  309 (312)
Q Consensus       291 l~l~p~~------~Ka~~rrg~a~~  309 (312)
                      +++.+..      ..++.+.|.+|.
T Consensus       104 ~~~~~~~~~~~~~~~~~~~l~~~~~  128 (290)
T d1qqea_         104 IQIFTHRGQFRRGANFKFELGEILE  128 (290)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             hHHhhhcccchhHHHHHHHHHHhHh
Confidence            9876554      567777776663

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.82  E-value=9.3e-06  Score=70.46  Aligned_cols=76  Identities=8%  Similarity=-0.244  Sum_probs=66.3

Q ss_pred             HhhhhhHHhhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHcCCHHHHHHHHHHHHHcCC
Q 021445          216 KVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGD  295 (312)
Q Consensus       216 k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~l~p  295 (312)
                      ...|+.+...+++.+|+..|.+++.                  .+|....++.++|.++.++|++++|++++++|+++||
T Consensus       246 ~~l~~~~~~~~~~~~a~~~~~~~~~------------------~~p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~ldP  307 (334)
T d1dcea1         246 ELSVEKSTVLQSELESCKELQELEP------------------ENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDP  307 (334)
T ss_dssp             CCCHHHHHHHHHHHHHHHHHHHHCT------------------TCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCG
T ss_pred             HHHHHHHHHHhhHHHHHHHHHHHHh------------------hCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCc
Confidence            3567777788889999999988888                  6778889999999999999999999999999999999


Q ss_pred             CchHHHHHHHHHhh
Q 021445          296 DNVKALFRQGQVSI  309 (312)
Q Consensus       296 ~~~Ka~~rrg~a~~  309 (312)
                      .+...|...+..+.
T Consensus       308 ~~~~y~~~L~~~~~  321 (334)
T d1dcea1         308 MRAAYLDDLRSKFL  321 (334)
T ss_dssp             GGHHHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHh
Confidence            98888877776654

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.79  E-value=1.3e-05  Score=73.97  Aligned_cols=76  Identities=7%  Similarity=-0.109  Sum_probs=49.0

Q ss_pred             hHhhhhhHHhhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 021445          215 IKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDG  294 (312)
Q Consensus       215 ~k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~l~  294 (312)
                      +...|..+.+.+++.+|+..|.+++.                    .....++.|+|.++.++++|++|+.++.+|++++
T Consensus       123 ~~~lg~~~~~~~~~~~A~~~~~~al~--------------------~~~~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~  182 (497)
T d1ya0a1         123 SSQLGIISNKQTHTSAIVKPQSSSCS--------------------YICQHCLVHLGDIARYRNQTSQAESYYRHAAQLV  182 (497)
T ss_dssp             --------------------CCHHHH--------------------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHhHHHHHhCCCHHHHHHHHHHHhC--------------------CCHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC
Confidence            44555555566666666666666555                    2335689999999999999999999999999999


Q ss_pred             CCchHHHHHHHHHhhh
Q 021445          295 DDNVKALFRQGQVSII  310 (312)
Q Consensus       295 p~~~Ka~~rrg~a~~~  310 (312)
                      |++..+|+.+|.++..
T Consensus       183 P~~~~~~~~Lg~~~~~  198 (497)
T d1ya0a1         183 PSNGQPYNQLAILASS  198 (497)
T ss_dssp             TTBSHHHHHHHHHHHH
T ss_pred             CCchHHHHHHHHHHHH
Confidence            9999999999999865

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.78  E-value=7.2e-05  Score=63.54  Aligned_cols=87  Identities=14%  Similarity=0.072  Sum_probs=65.8

Q ss_pred             hhhhHhhhhhHHh-hhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHcCCHHHHHHHHHHH
Q 021445          212 VDSIKVFGNEHYK-KQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA  290 (312)
Q Consensus       212 ~~~~k~~Gn~~~~-~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~a  290 (312)
                      +..+...|..+.. .++|++|+..|++|+++....            ...+....++.|+|.++.++|+|++|+..+.++
T Consensus       117 ~~~~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~------------~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~  184 (290)
T d1qqea_         117 ANFKFELGEILENDLHDYAKAIDCYELAGEWYAQD------------QSVALSNKCFIKCADLKALDGQYIEASDIYSKL  184 (290)
T ss_dssp             HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHT------------TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhc------------CchhhhhhHHHHHHHHHHHcChHHHHHHHHHHH
Confidence            4445667777766 499999999999999864331            013445678999999999999999999999999


Q ss_pred             HHcCCCch-------HHHHHHHHHhhh
Q 021445          291 MRDGDDNV-------KALFRQGQVSII  310 (312)
Q Consensus       291 l~l~p~~~-------Ka~~rrg~a~~~  310 (312)
                      +.+.+.+.       ..++..+.++..
T Consensus       185 ~~~~~~~~~~~~~~~~~~~~~~~~~l~  211 (290)
T d1qqea_         185 IKSSMGNRLSQWSLKDYFLKKGLCQLA  211 (290)
T ss_dssp             HHTTSSCTTTGGGHHHHHHHHHHHHHH
T ss_pred             HHhCccchhhhhhHHHHHHHHHHHHHH
Confidence            99887654       234566665543

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

Probab=97.61  E-value=9.2e-05  Score=62.71  Aligned_cols=86  Identities=12%  Similarity=-0.000  Sum_probs=65.4

Q ss_pred             hhhhhHhhhhhHHhhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHcCCHHHHHHHHHHH
Q 021445          211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA  290 (312)
Q Consensus       211 ~~~~~k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~a  290 (312)
                      .++...-+|..++..|++++|+..|++||+....       +      .......++.++|.+|..+|++++|+..+.++
T Consensus        11 ~ae~~~lrA~~~~~~g~~~~A~~~~~~aL~~~~~-------~------~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a   77 (366)
T d1hz4a_          11 HAEFNALRAQVAINDGNPDEAERLAKLALEELPP-------G------WFYSRIVATSVLGEVLHCKGELTRSLALMQQT   77 (366)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCT-------T------CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcC-------C------CcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence            3444555789999999999999999999984321       1      12345678999999999999999999999999


Q ss_pred             HHcCCCc------hHHHHHHHHHhh
Q 021445          291 MRDGDDN------VKALFRQGQVSI  309 (312)
Q Consensus       291 l~l~p~~------~Ka~~rrg~a~~  309 (312)
                      +++.+..      ..+++.++.++.
T Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~  102 (366)
T d1hz4a_          78 EQMARQHDVWHYALWSLIQQSEILF  102 (366)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhhcchHHHHHHHHHHHHHHH
Confidence            9876432      345566666554

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.56  E-value=8.3e-05  Score=58.93  Aligned_cols=76  Identities=8%  Similarity=-0.056  Sum_probs=64.4

Q ss_pred             hhhhhHhhhhhHHhhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHcCCHHHHHHHHHHH
Q 021445          211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA  290 (312)
Q Consensus       211 ~~~~~k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~a  290 (312)
                      ....+...+..+.+.|+|++|+..++++|.                  ++|....+|.+++.++.++|++.+|++.+.++
T Consensus        66 ~~~a~~~la~~~~~~g~~~~Al~~~~~al~------------------~~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~  127 (179)
T d2ff4a2          66 KVLAHTAKAEAEIACGRASAVIAELEALTF------------------EHPYREPLWTQLITAYYLSDRQSDALGAYRRV  127 (179)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH------------------HSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCchHHHHHHHHHHH------------------hCCccHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence            345678899999999999999999999999                  77888899999999999999999999999988


Q ss_pred             -------HHcCCCc-hHHHHHH
Q 021445          291 -------MRDGDDN-VKALFRQ  304 (312)
Q Consensus       291 -------l~l~p~~-~Ka~~rr  304 (312)
                             |.++|.. ..+++.+
T Consensus       128 ~~~L~~eLG~~P~~~l~~l~~~  149 (179)
T d2ff4a2         128 KTTLADDLGIDPGPTLRALNER  149 (179)
T ss_dssp             HHHHHHHHSCCCCHHHHHHHHH
T ss_pred             HHHHHHHhCCCcCHHHHHHHHH
Confidence                   5677753 3344443

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.40  E-value=0.00019  Score=61.72  Aligned_cols=99  Identities=8%  Similarity=-0.093  Sum_probs=64.6

Q ss_pred             hhhHhhhhhHHhhhcHHHHHHHHHHHHHHhhhcc-----------ccCCCCchhh-------hHHHHHHHHH-HhHHHHH
Q 021445          213 DSIKVFGNEHYKKQDYKMALRKYRKALRYLDICW-----------EKEGIDEGKS-------SSLRKTKSQI-FTNSSAC  273 (312)
Q Consensus       213 ~~~k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~-----------~~~~~~~~~~-------~~~~~~~~~~-~~N~a~~  273 (312)
                      ..+...++.....+++.+|+..|+++++.-....           .....+.++.       ..++|..... +.+++.+
T Consensus        74 ~~l~~~~~~~~~~~~~~~al~~~~~~l~~~pk~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~  153 (334)
T d1dcea1          74 QHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVA  153 (334)
T ss_dssp             HHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHhhhcchHHHHHHHHHHHHHHHHHHHhCCCcHHHHHHhhHHHHHhccccHHHHHHHHHHHHhhCchhhhhhhhHHHHH
Confidence            3345566667778888999999999887421110           0111111111       1123333444 4567788


Q ss_pred             HHHcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHhhhh
Q 021445          274 KLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQVSIIL  311 (312)
Q Consensus       274 ~~kl~~~~~Ai~~~~~al~l~p~~~Ka~~rrg~a~~~L  311 (312)
                      +...+++++|+..++++++++|.+..+|+.+|.++..+
T Consensus       154 ~~~~~~~~~Al~~~~~~i~~~p~~~~a~~~l~~~~~~~  191 (334)
T d1dcea1         154 AQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQL  191 (334)
T ss_dssp             HHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHH
T ss_pred             HHhccccHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHh
Confidence            88888888888888888888888888888888888765

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

Probab=96.94  E-value=0.0015  Score=54.79  Aligned_cols=71  Identities=7%  Similarity=-0.092  Sum_probs=59.8

Q ss_pred             hhhHhhhhhHHhhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHcCCHHHHHHHHHHHHH
Q 021445          213 DSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMR  292 (312)
Q Consensus       213 ~~~k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~  292 (312)
                      ..+...|..++..|++++|+..|++++......            ...+....++.++|.+|.++|++++|++.+.+||+
T Consensus       252 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~------------~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~Al~  319 (366)
T d1hz4a_         252 GQWRNIARAQILLGEFEPAEIVLEELNENARSL------------RLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK  319 (366)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT------------TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhc------------ccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            345667899999999999999999999864331            14567788999999999999999999999999998


Q ss_pred             cCC
Q 021445          293 DGD  295 (312)
Q Consensus       293 l~p  295 (312)
                      +.+
T Consensus       320 l~~  322 (366)
T d1hz4a_         320 LAN  322 (366)
T ss_dssp             HHH
T ss_pred             Hhh
Confidence            754

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.89  E-value=0.00028  Score=49.43  Aligned_cols=49  Identities=18%  Similarity=0.190  Sum_probs=41.9

Q ss_pred             hhhhhHhhhhhHHhhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHc
Q 021445          211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKL  277 (312)
Q Consensus       211 ~~~~~k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl  277 (312)
                      .+..+...|+.+++.|+|++|+..|++||+                  ++|....++.|++.....|
T Consensus        45 ~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~------------------l~P~~~~a~~Nl~~~~~~l   93 (95)
T d1tjca_          45 KVSVLDYLSYAVYQQGDLDKALLLTKKLLE------------------LDPEHQRANGNLKYFEYIM   93 (95)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH------------------HCTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhhHHHhcCChHHHHHHHHHHHH------------------hCcCCHHHHHHHHHHHHHh
Confidence            466788899999999999999999999999                  6677788999987766544

>d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein C (HcpC)
species: Helicobacter pylori [TaxId: 210]

Probab=96.52  E-value=0.0052  Score=50.34  Aligned_cols=75  Identities=17%  Similarity=0.117  Sum_probs=57.6

Q ss_pred             hhhhHhhhhhHHhhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHH----cCCHHHHHHHH
Q 021445          212 VDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLK----LGDLKGALLDT  287 (312)
Q Consensus       212 ~~~~k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~k----l~~~~~Ai~~~  287 (312)
                      ++.+.+.|..++++++|++|+..|++|.+.                    ....++.++|.+|+.    .+++..|+..+
T Consensus         2 p~~~~~lG~~~~~~~d~~~A~~~~~kAa~~--------------------g~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~   61 (265)
T d1ouva_           2 PKELVGLGAKSYKEKDFTQAKKYFEKACDL--------------------KENSGCFNLGVLYYQGQGVEKNLKKAASFY   61 (265)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--------------------TCHHHHHHHHHHHHHTSSSCCCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHC--------------------CCHHHHHHHHHHHHcCCCcchhHHHHHHhh
Confidence            356788999999999999999999999872                    124467788888887    66888888888


Q ss_pred             HHHHHcCCCchHHHHHHHHHh
Q 021445          288 EFAMRDGDDNVKALFRQGQVS  308 (312)
Q Consensus       288 ~~al~l~p~~~Ka~~rrg~a~  308 (312)
                      ..+...+  ++.+.+..|..+
T Consensus        62 ~~a~~~~--~~~a~~~l~~~~   80 (265)
T d1ouva_          62 AKACDLN--YSNGCHLLGNLY   80 (265)
T ss_dssp             HHHHHTT--CHHHHHHHHHHH
T ss_pred             ccccccc--ccchhhcccccc
Confidence            8877653  566666665554

>d1wfda_ a.7.14.1 (A:) Hypothetical protein 1500032H18Rik {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: Spectrin repeat-like
superfamily: MIT domain
family: MIT domain
domain: Hypothetical protein 1500032H18Rik
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.71  E-value=0.015  Score=40.19  Aligned_cols=66  Identities=15%  Similarity=0.079  Sum_probs=46.7

Q ss_pred             hhhhhhhhhHhhhhhHHhhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHH
Q 021445          207 WWMNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACK  274 (312)
Q Consensus       207 ~~~~~~~~~k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~  274 (312)
                      ..+..|..+..++-.+-+.|+|++|+.+|.+||++|..... ...++.. ...-...+.=|++||...
T Consensus        10 ~~~~~A~~l~~~Av~~D~~g~y~eA~~~Y~~aie~l~~~~~-~e~~~~~-k~~l~~k~~eYl~RAE~L   75 (93)
T d1wfda_          10 SDSTAAVAVLKRAVELDAESRYQQALVCYQEGIDMLLQVLK-GTKESSK-RCVLRTKISGYMDRAENI   75 (93)
T ss_dssp             CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHH-TCCCHHH-HHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhh-ccCCHHH-HHHHHHHHHHHHHHHHHH
Confidence            34567888899999999999999999999999998866432 2223222 223344556677777654

>d1wr0a1 a.7.14.1 (A:5-81) Vacuolar sorting protein 4b (VPS4B, SKD1 protein) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: Spectrin repeat-like
superfamily: MIT domain
family: MIT domain
domain: Vacuolar sorting protein 4b (VPS4B, SKD1 protein)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.06  E-value=0.019  Score=38.12  Aligned_cols=66  Identities=14%  Similarity=0.147  Sum_probs=46.4

Q ss_pred             hhhhhhhhhHhhhhhHHhhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHH
Q 021445          207 WWMNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSAC  273 (312)
Q Consensus       207 ~~~~~~~~~k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~  273 (312)
                      ..++.|..+-.+|-.+=+.|+|++|+.+|.+|+++|......+..++.... .-...+.-|++||..
T Consensus         6 ~~l~~A~~l~~~Av~~D~~~~y~~A~~~Y~~a~~~l~~~l~~e~~~~~~k~-~l~~k~~~Yl~RAE~   71 (77)
T d1wr0a1           6 PNLQKAIDLASKAAQEDKAGNYEEALQLYQHAVQYFLHVVKYEAQGDKAKQ-SIRAKCTEYLDRAEK   71 (77)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHSCCTGGGGH-HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhccCCCHHHHH-HHHHHHHHHHHHHHH
Confidence            456678888899999999999999999999999987665433333332222 233445667777754

>d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein B (HcpB)
species: Helicobacter pylori [TaxId: 210]

Probab=93.92  E-value=0.11  Score=37.53  Aligned_cols=63  Identities=11%  Similarity=-0.079  Sum_probs=47.3

Q ss_pred             hcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHH----cCCHHHHHHHHHHHHHcCCCchHHH
Q 021445          226 QDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLK----LGDLKGALLDTEFAMRDGDDNVKAL  301 (312)
Q Consensus       226 ~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~k----l~~~~~Ai~~~~~al~l~p~~~Ka~  301 (312)
                      .++++|+..|++|.+                    .....+..++|..|+.    ..++.+|++.+.++.+.  .++.|.
T Consensus        37 ~~~~~a~~~~~~aa~--------------------~g~~~a~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa~~--g~~~a~   94 (133)
T d1klxa_          37 INKQKLFQYLSKACE--------------------LNSGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGL--NDQDGC   94 (133)
T ss_dssp             SCHHHHHHHHHHHHH--------------------TTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT--TCHHHH
T ss_pred             cCHHHHHHHHhhhhc--------------------ccchhhhhhHHHhhhhccccchhhHHHHHHHhhhhcc--CcchHH
Confidence            456667777766665                    1234567888988887    56899999999999876  578899


Q ss_pred             HHHHHHhhh
Q 021445          302 FRQGQVSII  310 (312)
Q Consensus       302 ~rrg~a~~~  310 (312)
                      ++.|..|..
T Consensus        95 ~~Lg~~y~~  103 (133)
T d1klxa_          95 LILGYKQYA  103 (133)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHc
Confidence            999888764

>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: HAT/Suf repeat
domain: Cleavage stimulation factor 77 kDa subunit CSTF3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=93.37  E-value=0.11  Score=43.21  Aligned_cols=58  Identities=12%  Similarity=-0.048  Sum_probs=30.6

Q ss_pred             HhhhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHHcCCHHHHHHHHHHHHHcCCCc
Q 021445          223 YKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDN  297 (312)
Q Consensus       223 ~~~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~l~p~~  297 (312)
                      -..+.+++|...|.+|++.+.                 |....++...+....+++++++|...++++|...|.+
T Consensus        75 ~~~~~~~~a~~i~~ral~~~~-----------------p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~  132 (308)
T d2onda1          75 NAKLFSDEAANIYERAISTLL-----------------KKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDID  132 (308)
T ss_dssp             HHHHHHHHHHHHHHHHHTTTT-----------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSC
T ss_pred             hcccchHHHHHHHHHHHHHcC-----------------CCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCC
Confidence            344556777777777776321                 1112344445555555555555555555555555543

>d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein C (HcpC)
species: Helicobacter pylori [TaxId: 210]

Probab=93.33  E-value=0.037  Score=44.89  Aligned_cols=69  Identities=19%  Similarity=0.126  Sum_probs=45.9

Q ss_pred             hhhhHhhhhhHHh----hhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHH----cCCHHHH
Q 021445          212 VDSIKVFGNEHYK----KQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLK----LGDLKGA  283 (312)
Q Consensus       212 ~~~~k~~Gn~~~~----~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~k----l~~~~~A  283 (312)
                      +..+.+.|..++.    .+++++|+..|++|.+.                    ....++.|+|.+|.+    .+++.+|
T Consensus       178 ~~A~~~lg~~y~~g~~~~~d~~~A~~~~~~aa~~--------------------g~~~a~~~LG~~y~~G~g~~~n~~~A  237 (265)
T d1ouva_         178 SPGCFNAGNMYHHGEGATKNFKEALARYSKACEL--------------------ENGGGCFNLGAMQYNGEGVTRNEKQA  237 (265)
T ss_dssp             HHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHT--------------------TCHHHHHHHHHHHHTTSSSSCCSTTH
T ss_pred             cccccchhhhcccCcccccchhhhhhhHhhhhcc--------------------cCHHHHHHHHHHHHcCCCCccCHHHH
Confidence            3344556656554    56788888888888762                    124466788888876    4478888


Q ss_pred             HHHHHHHHHcCCCchHH
Q 021445          284 LLDTEFAMRDGDDNVKA  300 (312)
Q Consensus       284 i~~~~~al~l~p~~~Ka  300 (312)
                      ++.+.+|.......+..
T Consensus       238 ~~~~~kAa~~g~~~A~~  254 (265)
T d1ouva_         238 IENFKKGCKLGAKGACD  254 (265)
T ss_dssp             HHHHHHHHHHTCHHHHH
T ss_pred             HHHHHHHHHCcCHHHHH
Confidence            88888888776555433

>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: HAT/Suf repeat
domain: Cleavage stimulation factor 77 kDa subunit CSTF3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=93.25  E-value=0.075  Score=44.28  Aligned_cols=27  Identities=11%  Similarity=0.004  Sum_probs=17.7

Q ss_pred             hHhhhhhHHhhhcHHHHHHHHHHHHHH
Q 021445          215 IKVFGNEHYKKQDYKMALRKYRKALRY  241 (312)
Q Consensus       215 ~k~~Gn~~~~~~~y~~A~~~Y~kal~~  241 (312)
                      +...++...+.++++.|...|.+|++.
T Consensus       137 w~~~~~~~~~~~~~~~ar~i~~~al~~  163 (308)
T d2onda1         137 YIQYMKFARRAEGIKSGRMIFKKARED  163 (308)
T ss_dssp             HHHHHHHHHHHHCHHHHHHHHHHHHTS
T ss_pred             HHHHHHHHHHcCChHHHHHHHHHHHHh
Confidence            345556666667777777777777763

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]}

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=92.80  E-value=0.015  Score=48.22  Aligned_cols=89  Identities=6%  Similarity=-0.167  Sum_probs=63.0

Q ss_pred             hhhhhHhhhhhHHhhhcHHHHHHHHHHHHHHhhhccc-----------------cCCCCchhhhHHHHHHHHHHhHHHHH
Q 021445          211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWE-----------------KEGIDEGKSSSLRKTKSQIFTNSSAC  273 (312)
Q Consensus       211 ~~~~~k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~N~a~~  273 (312)
                      .+......|..+...|+|++|+..|++++++-.....                 .............+.....+..++..
T Consensus        29 d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~P~~~~~~~~l~~ll~a~~~~~~a~~~~~~~~~~~~p~~~~~~l~~a~~  108 (264)
T d1zbpa1          29 DASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKAAQARKDFAQGAATAKVLGENEELTKSLVSFNL  108 (264)
T ss_dssp             CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHTTSCCCEECCCSCHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccccHHHHHHhhhhhcccCchHHHHHHHHHHH
Confidence            3455678999999999999999999999975321100                 00000000011134456678889999


Q ss_pred             HHHcCCHHHHHHHHHHHHHcCCCchH
Q 021445          274 KLKLGDLKGALLDTEFAMRDGDDNVK  299 (312)
Q Consensus       274 ~~kl~~~~~Ai~~~~~al~l~p~~~K  299 (312)
                      +.+.|++++|++.+.+++++.|....
T Consensus       109 ~~~~gd~~~A~~~~~~a~e~~p~~~~  134 (264)
T d1zbpa1         109 SMVSQDYEQVSELALQIEELRQEKGF  134 (264)
T ss_dssp             HHHHTCHHHHHHHHHHHHHHCCCCCE
T ss_pred             HHhCCCHHHHHHHHHHHHhcCCCCCc
Confidence            99999999999999999999997653

>d2crba1 a.7.16.1 (A:8-90) Nuclear receptor binding factor 2, NRBF2, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: Spectrin repeat-like
superfamily: MIT domain-like
family: MIT domain
domain: Nuclear receptor binding factor 2, NRBF2, N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=92.54  E-value=0.063  Score=35.41  Aligned_cols=36  Identities=22%  Similarity=0.228  Sum_probs=30.1

Q ss_pred             hhhhhhhHhhhhhHHhhhcHHHHHHHHHHHHHHhhh
Q 021445          209 MNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDI  244 (312)
Q Consensus       209 ~~~~~~~k~~Gn~~~~~~~y~~A~~~Y~kal~~l~~  244 (312)
                      ++.|-..--++..+.+.|+|++||+++.+|..++..
T Consensus         5 LN~AH~~~RrAer~l~~~rydeAIech~kA~~yl~e   40 (83)
T d2crba1           5 LNLAHQQSRRADRLLAAGKYEEAISCHRKATTYLSE   40 (83)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence            345555667889999999999999999999998765

>d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein B (HcpB)
species: Helicobacter pylori [TaxId: 210]

Probab=89.11  E-value=0.54  Score=33.62  Aligned_cols=61  Identities=21%  Similarity=0.141  Sum_probs=46.1

Q ss_pred             hHhhhhhHHh----hhcHHHHHHHHHHHHHHhhhccccCCCCchhhhHHHHHHHHHHhHHHHHHHH----cCCHHHHHHH
Q 021445          215 IKVFGNEHYK----KQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLK----LGDLKGALLD  286 (312)
Q Consensus       215 ~k~~Gn~~~~----~~~y~~A~~~Y~kal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~k----l~~~~~Ai~~  286 (312)
                      ....|..++.    ..++.+|++.|++|.+.                    ....+..+++.+|..    .+++.+|++.
T Consensus        58 ~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa~~--------------------g~~~a~~~Lg~~y~~G~gv~~d~~~A~~~  117 (133)
T d1klxa_          58 CRFLGDFYENGKYVKKDLRKAAQYYSKACGL--------------------NDQDGCLILGYKQYAGKGVVKNEKQAVKT  117 (133)
T ss_dssp             HHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT--------------------TCHHHHHHHHHHHHHTSSSCCCHHHHHHH
T ss_pred             hhhHHHhhhhccccchhhHHHHHHHhhhhcc--------------------CcchHHHHHHHHHHcCCccCCCHHHHHHH
Confidence            3444544443    46789999999999872                    124477899999998    5699999999


Q ss_pred             HHHHHHcCC
Q 021445          287 TEFAMRDGD  295 (312)
Q Consensus       287 ~~~al~l~p  295 (312)
                      +.+|.++..
T Consensus       118 ~~~Aa~~G~  126 (133)
T d1klxa_         118 FEKACRLGS  126 (133)
T ss_dssp             HHHHHHTTC
T ss_pred             HHHHHHCCC
Confidence            999998753