Citrus Sinensis ID: 021452

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310--
MISPLIPNNCMLLQCFHSGVSELGIRLGFGSIADRELASNGKSPEKLKAAGSFLMKVFGVLAGKGSKRVGALYLTCQLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNPQSEANIRMILKYLIPVKLSIGILPKDWLLEKYNLVEYSNIVQALRRGDLRLLRHALEEHEDQFLRSGVYLVLEKLELQVYQRLFKKIYIIQKQKDPSKAHQMKLDVIVKALKWLEMDMDVDEVECIVAILIHKNLVKGYFAHKSKVVVLSKQDPFPKLNGKPVNS
cccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHcccccHHHHccccccccHHHHHHHHHccHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHccccccHHHHHHHHHHHHHcccEEEEEEEccEEEEEEccccccccccccccc
cccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHccccccHHHcccccEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHccHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHccEEHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHccccccHHHHHHHHHHHHHcccEEEEEEccccEEEEEccccccccccccccc
misplipnncmllQCFHSGvselgirlgfgsiadrelasngkspeKLKAAGSFLMKVFGVLAgkgskrvgALYLTCQLFKIYFKLGTVHLCRSVIRSIETarifdfeefpkrdkvTYMYYTGRLevfnenfpaadQKLSYALINCNPQSEANIRMILKYLIPVklsigilpkdwllekynlVEYSNIVQALRRGDLRLLRHALEEHEDQFLRSGVYLVLEKLELQVYQRLFKKIYIIQkqkdpskahQMKLDVIVKALKWLEMDMDVDEVECIVAILIHKNLVKGYFAHKSKVVVLskqdpfpklngkpvns
MISPLIPNNCMLLQCFHSGVSELGIRLGFGSIADRELASNGKSPEKLKAAGSFLMKVFGVLAGKGSKRVGALYLTCQLFKIYFKLGTVHLCRSVIRSietarifdfeefpkrdkVTYMYYTGRLEVFNENFPAADQKLSYALINCNPQSEANIRMILKYLIPVKLSIGILPKDWLLEKYNLVEYSNIVQALRRGDLRLLRHALEEHEDQFLRSGVYLVLEKLELQVYQRLFKKIYIIQkqkdpskahqmkLDVIVKALKWLEMDMDVDEVECIVAILIHKNLVKGYFAHKSKVVvlskqdpfpklngkpvns
MISPLIPNNCMLLQCFHSGVSELGIRLGFGSIADRELASNGKSPEKLKAAGSFLMKVFGVLAGKGSKRVGALYLTCQLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNPQSEANIRMILKYLIPVKLSIGILPKDWLLEKYNLVEYSNIVQALRRGDlrllrhaleeheDQFLRSGVYLVLEKLELQVYQRLFKKIYIIQKQKDPSKAHQMKLDVIVKALKWLEMDMDVDEVECIVAILIHKNLVKGYFAHKSKVVVLSKQDPFPKLNGKPVNS
****LIPNNCMLLQCFHSGVSELGIRLGFGSIAD**************AAGSFLMKVFGVLAGKGSKRVGALYLTCQLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNPQSEANIRMILKYLIPVKLSIGILPKDWLLEKYNLVEYSNIVQALRRGDLRLLRHALEEHEDQFLRSGVYLVLEKLELQVYQRLFKKIYIIQKQ*****AHQMKLDVIVKALKWLEMDMDVDEVECIVAILIHKNLVKGYFAHKSKVVVL****************
*ISPLIPNNCMLLQCFHSGVSELGIRLGFGS*******************GSFLMKVFGVLAGKGSKRVGALYLTCQLFKIYFKLGTVHLCRSVIRS***********FPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNPQSEANIRMILKYLIPVKLSIGILPKDWLLEKYNLVEYSNIVQALRRGDLRLLRHALEEHEDQFLRSGVYLVLEKLELQVYQRLFKKIYIIQKQKDPSKAHQMKLDVIVKALKWLEMDMDVDEVECIVAILIHKNLVKGYFAHKSKVVVLSKQDPFPKL**K****
MISPLIPNNCMLLQCFHSGVSELGIRLGFGSIADRELASNGKSPEKLKAAGSFLMKVFGVLAGKGSKRVGALYLTCQLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNPQSEANIRMILKYLIPVKLSIGILPKDWLLEKYNLVEYSNIVQALRRGDLRLLRHALEEHEDQFLRSGVYLVLEKLELQVYQRLFKKIYIIQK********QMKLDVIVKALKWLEMDMDVDEVECIVAILIHKNLVKGYFAHKSKVVVLSKQDPFPK********
*ISPLIPNNCMLLQCFHSGVSELGIRLGFGSIADRELASNGKSPEKLKAAGSFLMKVFGVLAGKGSKRVGALYLTCQLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNPQSEANIRMILKYLIPVKLSIGILPKDWLLEKYNLVEYSNIVQALRRGDLRLLRHALEEHEDQFLRSGVYLVLEKLELQVYQRLFKKIYIIQKQKDPSKAHQMKLDVIVKALKWLEMDMDVDEVECIVAILIHKNLVKGYFAHKSKVVVLSKQDPFPKL*******
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
SSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
MISPLIPNNCMLLQCFHSGVSELGIRLGFGSIADRELASNGKSPEKLKAAGSFLMKVFGVLAGKGSKRVGALYLTCQLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNPQSEANIRMILKYLIPVKLSIGILPKDWLLEKYNLVEYSNIVQALRRGDLRLLRHALEEHEDQFLRSGVYLVLEKLELQVYQRLFKKIYIIQKQKDPSKAHQMKLDVIVKALKWLEMDMDVDEVECIVAILIHKNLVKGYFAHKSKVVVLSKQDPFPKLNGKPVNS
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query312 2.2.26 [Sep-21-2011]
Q5JVF3399 PCI domain-containing pro yes no 0.865 0.676 0.418 7e-59
Q5FWP8399 PCI domain-containing pro N/A no 0.881 0.689 0.412 2e-58
Q8BFV2399 PCI domain-containing pro yes no 0.881 0.689 0.412 2e-55
Q2TBN6408 PCI domain-containing pro yes no 0.900 0.688 0.398 9e-53
Q5U3P0399 PCI domain-containing pro yes no 0.884 0.691 0.384 3e-50
Q9VTL1395 PCI domain-containing pro yes no 0.807 0.637 0.385 7e-49
Q54PX7430 PCI domain-containing pro yes no 0.756 0.548 0.388 4e-46
Q95QU0413 PCI domain-containing pro yes no 0.794 0.600 0.377 7e-41
Q60YJ7413 PCI domain-containing pro N/A no 0.794 0.600 0.385 1e-39
P0CR48403 Protein CSN12 homolog OS= yes no 0.858 0.665 0.320 1e-34
>sp|Q5JVF3|PCID2_HUMAN PCI domain-containing protein 2 OS=Homo sapiens GN=PCID2 PE=1 SV=2 Back     alignment and function desciption
 Score =  227 bits (579), Expect = 7e-59,   Method: Compositional matrix adjust.
 Identities = 120/287 (41%), Positives = 192/287 (66%), Gaps = 17/287 (5%)

Query: 29  FGSIADRELASNGKSP--EKLKAAGSFLMKVFGVLAG------KGSKRVGALYLTCQLFK 80
           F + AD++L   GKS   + L+ A   LM  F V A       + SK+ G L+L  QLFK
Sbjct: 118 FANNADQQLVKKGKSKVGDMLEKAAELLMSCFRVCASDTRAGIEDSKKWGMLFLVNQLFK 177

Query: 81  IYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSY 140
           IYFK+  +HLC+ +IR+I+++ + D  ++    +VTY YY GR  +F+ +F  A++ LS+
Sbjct: 178 IYFKINKLHLCKPLIRAIDSSNLKD--DYSTAQRVTYKYYVGRKAMFDSDFKQAEEYLSF 235

Query: 141 ALINCNPQSEANIRMILKYLIPVKLSIGILPKDWLLEKYNLVEYSNIVQALRRGDLRLLR 200
           A  +C+  S+ N RMIL YL+PVK+ +G +P   LL+KY+L++++ + +A+  G+L LL 
Sbjct: 236 AFEHCHRSSQKNKRMILIYLLPVKMLLGHMPTVELLKKYHLMQFAEVTRAVSEGNLLLLH 295

Query: 201 HALEEHEDQFLRSGVYLVLEKLELQVYQRLFKKIYIIQKQKDPSKAHQMKLDVIVKALKW 260
            AL +HE  F+R G++L+LEKL++  Y+ LFKK+Y++       K HQ+ LD  + ALK+
Sbjct: 296 EALAKHEAFFIRCGIFLILEKLKIITYRNLFKKVYLL------LKTHQLSLDAFLVALKF 349

Query: 261 LEM-DMDVDEVECIVAILIHKNLVKGYFAHKSKVVVLSKQDPFPKLN 306
           +++ D+D+DEV+CI+A LI+   VKGY +H+ + +V+SKQ+PFP L+
Sbjct: 350 MQVEDVDIDEVQCILANLIYMGHVKGYISHQHQKLVVSKQNPFPPLS 396
Required for B-cell survival through the regulation of the expression of cell-cycle checkpoint MAD2L1 protein during B cell differentiation.
Homo sapiens (taxid: 9606)
>sp|Q5FWP8|PCID2_XENLA PCI domain-containing protein 2 OS=Xenopus laevis GN=pcid2 PE=2 SV=1 Back     alignment and function description
>sp|Q8BFV2|PCID2_MOUSE PCI domain-containing protein 2 OS=Mus musculus GN=Pcid2 PE=2 SV=1 Back     alignment and function description
>sp|Q2TBN6|PCID2_BOVIN PCI domain-containing protein 2 OS=Bos taurus GN=PCID2 PE=2 SV=1 Back     alignment and function description
>sp|Q5U3P0|PCID2_DANRE PCI domain-containing protein 2 OS=Danio rerio GN=pcid2 PE=2 SV=1 Back     alignment and function description
>sp|Q9VTL1|PCID2_DROME PCI domain-containing protein 2 homolog OS=Drosophila melanogaster GN=PCID2 PE=1 SV=2 Back     alignment and function description
>sp|Q54PX7|PCID2_DICDI PCI domain-containing protein 2 homolog OS=Dictyostelium discoideum GN=pcid2 PE=3 SV=1 Back     alignment and function description
>sp|Q95QU0|PCID2_CAEEL PCI domain-containing protein 2 homolog OS=Caenorhabditis elegans GN=C27F2.10 PE=3 SV=1 Back     alignment and function description
>sp|Q60YJ7|PCID2_CAEBR PCI domain-containing protein 2 homolog OS=Caenorhabditis briggsae GN=CBG18211 PE=3 SV=1 Back     alignment and function description
>sp|P0CR48|CSN12_CRYNJ Protein CSN12 homolog OS=Cryptococcus neoformans var. neoformans serotype D (strain JEC21 / ATCC MYA-565) GN=CSN12 PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query312
225444936 413 PREDICTED: PCI domain-containing protein 0.897 0.677 0.917 1e-149
255546087412 PCI domain-containing protein, putative 0.897 0.679 0.910 1e-148
224088756 413 predicted protein [Populus trichocarpa] 0.897 0.677 0.907 1e-146
449446588 413 PREDICTED: PCI domain-containing protein 0.897 0.677 0.871 1e-142
297832206 414 hypothetical protein ARALYDRAFT_480516 [ 0.897 0.676 0.857 1e-138
356547787410 PREDICTED: PCI domain-containing protein 0.897 0.682 0.907 1e-137
356561961 413 PREDICTED: PCI domain-containing protein 0.897 0.677 0.903 1e-137
30680717 413 proteasome-like protein [Arabidopsis tha 0.897 0.677 0.842 1e-137
212720664409 uncharacterized protein LOC100193209 [Ze 0.919 0.701 0.798 1e-133
414885291295 TPA: hypothetical protein ZEAMMB73_56506 0.919 0.972 0.798 1e-133
>gi|225444936|ref|XP_002282302.1| PREDICTED: PCI domain-containing protein 2 [Vitis vinifera] gi|297738675|emb|CBI27920.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
 Score =  534 bits (1375), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 257/280 (91%), Positives = 272/280 (97%)

Query: 33  ADRELASNGKSPEKLKAAGSFLMKVFGVLAGKGSKRVGALYLTCQLFKIYFKLGTVHLCR 92
           ADRELAS GK+PEKLK AGSFLMKVFGVLAGKG KRVGALY+TCQLFKIYFKLGTVHLCR
Sbjct: 134 ADRELASVGKTPEKLKGAGSFLMKVFGVLAGKGPKRVGALYVTCQLFKIYFKLGTVHLCR 193

Query: 93  SVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNPQSEAN 152
           SVIRSIETARIFDFEEFP RDKVTYMYYTGRLEVFNENFPAADQKLSYAL++CNP  EAN
Sbjct: 194 SVIRSIETARIFDFEEFPIRDKVTYMYYTGRLEVFNENFPAADQKLSYALMHCNPHREAN 253

Query: 153 IRMILKYLIPVKLSIGILPKDWLLEKYNLVEYSNIVQALRRGDLRLLRHALEEHEDQFLR 212
           IRMILKYLIPVKLSIGILPK+WLLEKYNL+EYSNIVQAL+RGDLRLLRHAL+EHED+FLR
Sbjct: 254 IRMILKYLIPVKLSIGILPKNWLLEKYNLIEYSNIVQALKRGDLRLLRHALQEHEDRFLR 313

Query: 213 SGVYLVLEKLELQVYQRLFKKIYIIQKQKDPSKAHQMKLDVIVKALKWLEMDMDVDEVEC 272
           SGVYLVLEKLELQVYQRL KKIY IQKQKDPSKAHQ+KL+VIVKALKWLEMDMDVDEVEC
Sbjct: 314 SGVYLVLEKLELQVYQRLVKKIYFIQKQKDPSKAHQLKLEVIVKALKWLEMDMDVDEVEC 373

Query: 273 IVAILIHKNLVKGYFAHKSKVVVLSKQDPFPKLNGKPVNS 312
           I++ILI+KNL+KGYFAHKSKVVVLSKQDPFPKLNGKPVNS
Sbjct: 374 IMSILIYKNLMKGYFAHKSKVVVLSKQDPFPKLNGKPVNS 413

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|255546087|ref|XP_002514103.1| PCI domain-containing protein, putative [Ricinus communis] gi|223546559|gb|EEF48057.1| PCI domain-containing protein, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|224088756|ref|XP_002308527.1| predicted protein [Populus trichocarpa] gi|222854503|gb|EEE92050.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|449446588|ref|XP_004141053.1| PREDICTED: PCI domain-containing protein 2-like [Cucumis sativus] gi|449488021|ref|XP_004157917.1| PREDICTED: PCI domain-containing protein 2-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|297832206|ref|XP_002883985.1| hypothetical protein ARALYDRAFT_480516 [Arabidopsis lyrata subsp. lyrata] gi|297329825|gb|EFH60244.1| hypothetical protein ARALYDRAFT_480516 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|356547787|ref|XP_003542290.1| PREDICTED: PCI domain-containing protein 2-like [Glycine max] Back     alignment and taxonomy information
>gi|356561961|ref|XP_003549244.1| PREDICTED: PCI domain-containing protein 2-like [Glycine max] Back     alignment and taxonomy information
>gi|30680717|ref|NP_179546.2| proteasome-like protein [Arabidopsis thaliana] gi|26452802|dbj|BAC43481.1| unknown protein [Arabidopsis thaliana] gi|330251801|gb|AEC06895.1| proteasome-like protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|212720664|ref|NP_001131834.1| uncharacterized protein LOC100193209 [Zea mays] gi|194692672|gb|ACF80420.1| unknown [Zea mays] gi|414885294|tpg|DAA61308.1| TPA: hypothetical protein ZEAMMB73_565062 [Zea mays] Back     alignment and taxonomy information
>gi|414885291|tpg|DAA61305.1| TPA: hypothetical protein ZEAMMB73_565062 [Zea mays] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query312
TAIR|locus:2050414413 EER5 "ENHANCED ETHYLENE RESPON 0.897 0.677 0.803 8.8e-118
RGD|1307041400 Pcid2 "PCI domain containing 2 0.881 0.687 0.395 2.4e-53
UNIPROTKB|F1NEE3403 PCID2 "Uncharacterized protein 0.881 0.682 0.392 3.8e-53
UNIPROTKB|Q5JVF3399 PCID2 "PCI domain-containing p 0.881 0.689 0.392 1e-52
MGI|MGI:2443003399 Pcid2 "PCI domain containing 2 0.881 0.689 0.389 1e-52
UNIPROTKB|F1MWG9408 PCID2 "PCI domain-containing p 0.900 0.688 0.375 1.3e-50
UNIPROTKB|Q2TBN6408 PCID2 "PCI domain-containing p 0.900 0.688 0.375 1.3e-50
UNIPROTKB|F1RN42405 PCID2 "Uncharacterized protein 0.881 0.679 0.361 1.5e-49
ZFIN|ZDB-GENE-041114-79399 pcid2 "PCI domain containing 2 0.881 0.689 0.361 1.2e-47
FB|FBgn0036184395 PCID2 "PCI domain-containing p 0.807 0.637 0.382 7.9e-46
TAIR|locus:2050414 EER5 "ENHANCED ETHYLENE RESPONSE 5" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1160 (413.4 bits), Expect = 8.8e-118, P = 8.8e-118
 Identities = 225/280 (80%), Positives = 247/280 (88%)

Query:    33 ADRELASNGKSPEKLKAAGSFLMKVFGVLAGKGSKRVGALYLTCQLFKIYFKLGTVHLCR 92
             AD++L SNGKSPEKLKAAGS LMKVFGVLAGKG KRVGALY+TCQLFK YFKLGTV+LCR
Sbjct:   134 ADKDLTSNGKSPEKLKAAGSLLMKVFGVLAGKGPKRVGALYVTCQLFKTYFKLGTVNLCR 193

Query:    93 SVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNPQSEAN 152
             SVIRSIETARIFDFEEFP+RDKVTYMYYTGRLEVFNENFPAAD KLSYAL NCNP+ E N
Sbjct:   194 SVIRSIETARIFDFEEFPRRDKVTYMYYTGRLEVFNENFPAADTKLSYALQNCNPKRERN 253

Query:   153 IRMILKYLIPVKLSIGILPKDWLLEKYNLVEYSNIVQALRRGDXXXXXXXXXXXXDQFLR 212
             IRMILKYL+PVKLS+GI+PKD LL  YNL EY+ IVQALR+GD            D+FLR
Sbjct:   254 IRMILKYLVPVKLSLGIIPKDELLRNYNLHEYTKIVQALRKGDLRLLRHALQEHEDRFLR 313

Query:   213 SGVYLVLEKLELQVYQRLFKKIYIIQKQKDPSKAHQMKLDVIVKALKWLEMDMDVDEVEC 272
             SGVYLVLEKLELQVYQRL KKIYI QK  DP++AHQ+KL+ I KAL+WL+MDMD+DEVEC
Sbjct:   314 SGVYLVLEKLELQVYQRLMKKIYINQKLSDPARAHQLKLEGIAKALRWLDMDMDLDEVEC 373

Query:   273 IVAILIHKNLVKGYFAHKSKVVVLSKQDPFPKLNGKPVNS 312
             I+ ILI+KNLVKGY AHKSKVVVLSKQDPFPKLNGKPV+S
Sbjct:   374 IMTILIYKNLVKGYLAHKSKVVVLSKQDPFPKLNGKPVSS 413
GO:0005739 "mitochondrion" evidence=ISM
GO:0009723 "response to ethylene stimulus" evidence=IMP
GO:0009873 "ethylene mediated signaling pathway" evidence=RCA;IPI
GO:0048364 "root development" evidence=IMP
GO:0005515 "protein binding" evidence=IPI
GO:0005634 "nucleus" evidence=IDA
GO:0016973 "poly(A)+ mRNA export from nucleus" evidence=IMP
GO:0000303 "response to superoxide" evidence=RCA
GO:0007165 "signal transduction" evidence=RCA
GO:0008219 "cell death" evidence=RCA
GO:0009651 "response to salt stress" evidence=RCA
GO:0009733 "response to auxin stimulus" evidence=RCA
GO:0009737 "response to abscisic acid stimulus" evidence=RCA
GO:0009743 "response to carbohydrate stimulus" evidence=RCA
GO:0009751 "response to salicylic acid stimulus" evidence=RCA
GO:0009755 "hormone-mediated signaling pathway" evidence=RCA
GO:0009863 "salicylic acid mediated signaling pathway" evidence=RCA
RGD|1307041 Pcid2 "PCI domain containing 2" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|F1NEE3 PCID2 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|Q5JVF3 PCID2 "PCI domain-containing protein 2" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
MGI|MGI:2443003 Pcid2 "PCI domain containing 2" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|F1MWG9 PCID2 "PCI domain-containing protein 2" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|Q2TBN6 PCID2 "PCI domain-containing protein 2" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|F1RN42 PCID2 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-041114-79 pcid2 "PCI domain containing 2" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
FB|FBgn0036184 PCID2 "PCI domain-containing protein 2" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
estExt_fgenesh4_pm.C_LG_VI0641
hypothetical protein (413 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query312
COG5600413 COG5600, COG5600, Transcription-associated recombi 1e-39
pfam01399100 pfam01399, PCI, PCI domain 2e-10
>gnl|CDD|227887 COG5600, COG5600, Transcription-associated recombination protein [DNA replication, recombination, and repair] Back     alignment and domain information 
 Score =  143 bits (362), Expect = 1e-39
 Identities = 82/245 (33%), Positives = 126/245 (51%), Gaps = 10/245 (4%)

Query: 66  SKRVGALYLTCQLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLE 125
           SK+VG  Y+   LF+IY +LG   LC + +++ +   + D  E+ K   V + YY G   
Sbjct: 171 SKKVGLYYIANLLFQIYLRLGRFKLCENFLKASKEVSMPDISEYQKSQVVVFHYYLGIYY 230

Query: 126 VFNENFPAADQKLSYALINCNPQSEANIRMILKYLIPVKLSIG-ILPKDWLLEKYNLVE- 183
           + NENF  A   L+ A + C      N + IL Y IP  L +    P   LLE++     
Sbjct: 231 LLNENFHEAFLHLNEAFLQCPWLITRNRKRILPYYIPTSLLVNKFPPTKDLLERFKRCSV 290

Query: 184 YSNIVQALRRGDLRLLRHALEEHEDQFLRSGVYLVL-EKLELQVYQRLFKKIYIIQKQKD 242
           YS +V+A+R G++     AL  +E +F + G+YL L     L  ++ LF+KI+ +     
Sbjct: 291 YSPLVKAVRSGNIEDFDLALSRNERKFAKRGLYLTLLAHYPLVCFRNLFRKIWRLHG--- 347

Query: 243 PSKAHQMKLDV--IVKALKWLEMDMDVDEVECIVAILIHKNLVKGYFAHKSKVVVLSKQD 300
             K  ++ L +  IV  L  ++      EVECI+  LI   L++GY +H  + VV SK+D
Sbjct: 348 --KQSRLPLSILLIVLQLSAIDNFHSFKEVECILVTLIGLGLLRGYISHSRRTVVFSKKD 405

Query: 301 PFPKL 305
           PFP  
Sbjct: 406 PFPVS 410

Length = 413
>gnl|CDD|216479 pfam01399, PCI, PCI domain Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 312
KOG2688394 consensus Transcription-associated recombination p 100.0
COG5600413 Transcription-associated recombination protein [DN 100.0
KOG2581493 consensus 26S proteasome regulatory complex, subun 100.0
KOG1464440 consensus COP9 signalosome, subunit CSN2 [Posttran 99.83
PF01399105 PCI: PCI domain; InterPro: IPR000717 A homology do 99.65
KOG1463411 consensus 26S proteasome regulatory complex, subun 99.07
KOG2908380 consensus 26S proteasome regulatory complex, subun 99.0
KOG2582422 consensus COP9 signalosome, subunit CSN3 [Posttran 98.95
COG5159421 RPN6 26S proteasome regulatory complex component [ 98.64
smart0075388 PAM PCI/PINT associated module. 98.24
smart0008888 PINT motif in proteasome subunits, Int-6, Nip-1 an 98.24
KOG2753378 consensus Uncharacterized conserved protein, conta 97.65
PF10255404 Paf67: RNA polymerase I-associated factor PAF67; I 97.52
KOG1497399 consensus COP9 signalosome, subunit CSN4 [Posttran 97.18
PF0771934 TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 96.41
COG5187412 RPN7 26S proteasome regulatory complex component, 96.09
KOG1498439 consensus 26S proteasome regulatory complex, subun 96.06
KOG0687393 consensus 26S proteasome regulatory complex, subun 95.85
KOG1076843 consensus Translation initiation factor 3, subunit 95.65
PF1337173 TPR_9: Tetratricopeptide repeat 95.37
PF1343265 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL 95.29
KOG0686466 consensus COP9 signalosome, subunit CSN1 [Posttran 95.09
PF0051534 TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 94.42
KOG2758432 consensus Translation initiation factor 3, subunit 94.34
COG5071439 RPN5 26S proteasome regulatory complex component [ 93.15
PF1289584 Apc3: Anaphase-promoting complex, cyclosome, subun 92.7
PF04733290 Coatomer_E: Coatomer epsilon subunit; InterPro: IP 92.63
PF1317433 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_ 92.23
PF1342478 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 92.21
PF1318134 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_ 91.65
PF14938282 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 91.6
TIGR02552135 LcrH_SycD type III secretion low calcium response 91.35
cd00189100 TPR Tetratricopeptide repeat domain; typically con 91.0
PF1341469 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A 90.56
cd00189100 TPR Tetratricopeptide repeat domain; typically con 90.15
PRK15359144 type III secretion system chaperone protein SscB; 89.35
PF1341469 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A 89.33
PF0901269 FeoC: FeoC like transcriptional regulator; InterPr 89.05
PF1342844 TPR_14: Tetratricopeptide repeat 87.89
PF09976145 TPR_21: Tetratricopeptide repeat; InterPro: IPR018 86.99
TIGR02795119 tol_pal_ybgF tol-pal system protein YbgF. Members 86.47
KOG2072 988 consensus Translation initiation factor 3, subunit 85.55
smart0002834 TPR Tetratricopeptide repeats. Repeats present in 85.35
PF10602177 RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 83.22
KOG2300629 consensus Uncharacterized conserved protein [Funct 82.87
PF1317636 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ 82.35
PF1342478 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 80.31
>KOG2688 consensus Transcription-associated recombination protein - Thp1p [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information 
Probab=100.00  E-value=1.8e-66  Score=492.76  Aligned_cols=293  Identities=39%  Similarity=0.621  Sum_probs=279.0

Q ss_pred             CCCCCccchhhhHHHHHHHHHHHHHHHHHHHHHh-CCCChHHHHHHHHHHHHHhhhhcCC------CCchhHHHHHHHHH
Q 021452            6 IPNNCMLLQCFHSGVSELGIRLGFGSIADRELAS-NGKSPEKLKAAGSFLMKVFGVLAGK------GSKRVGALYLTCQL   78 (312)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~lr~~la~~~D~~~~~-~~~~~~~le~~~~~i~~~f~~~~~d------~sKk~~~~~~~n~l   78 (312)
                      .+++.|++|.++.  +|.++|+ +|+.+|....+ +...++.+|.+|++++++|+.|++|      ++||+|+++++|++
T Consensus        93 ~~~~~w~~~~l~r--v~~~l~~-la~~~~~~~~~~~s~~~~~le~~s~~i~~~f~~cl~d~~~~~~~~kk~~~~~i~n~l  169 (394)
T KOG2688|consen   93 GNDENWILPNLYR--VCKDLRY-LAINADCALLSFSSLPNQLLEAASRTISRLFSSCLSDRRADLEESKKVAMLYIVNQL  169 (394)
T ss_pred             ccccchHHHHHHH--HHHHHHH-HhhhhHHhhcCcccCchHHHHHHHHHHHHHHHHHhCccccccccchhhHHHHHHHHH
Confidence            5789999999999  9999999 99999999854 3445779999999999999999999      38999999999999


Q ss_pred             HHHHHhcCChhhHHHHHHHhhccCCCCCCCCCchhhHHHHHHHHHHhhHhcChHHHHHHHHHHHHhcCccchHHHHHHHH
Q 021452           79 FKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNPQSEANIRMILK  158 (312)
Q Consensus        79 ~k~Yfkl~~~~l~~~lik~i~~~~~p~~~~~~~~~~v~y~YY~G~~~~~~~~~~~A~~~L~~A~~~c~~~~~~nk~~IL~  158 (312)
                      |+|||+++++++|+++++++++. .+..+.++.+|+|+|+||.|+++|++.||.+|+.+|.+||++||.....|+++|++
T Consensus       170 f~Iyfri~~~~L~k~l~ra~~~~-~~~~~~~~l~~~v~y~YylGr~a~~~~d~~~A~~~L~~af~~cp~~~~~n~~~ili  248 (394)
T KOG2688|consen  170 FQIYFRIEKLLLCKNLIRAFDQS-GSDISDFPLAQLVVYHYYLGRYAMFESDFLNAFLQLNEAFRLCPDLLLKNKRLILI  248 (394)
T ss_pred             HHHHHHHhhHHHhHHHHHHhhcc-ccchhhcccccceeeeeeeeeehhhhhhHHHHHHHHHHHHHhCcHHHHhhhhhHHH
Confidence            99999999999999999999986 36788999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhcCCCCCchhhhhhchhchHHHHHHHHhCCHHHHHHHHHHchHHHHHhcHHHHHHhhHHHHHHHHHHHHHHHh
Q 021452          159 YLIPVKLSIGILPKDWLLEKYNLVEYSNIVQALRRGDLRLLRHALEEHEDQFLRSGVYLVLEKLELQVYQRLFKKIYIIQ  238 (312)
Q Consensus       159 yLIpv~Ll~G~~P~~~ll~~y~l~~y~~L~~Avk~Gnl~~f~~~l~~~~~~f~~~glylllerlr~lv~r~L~kkv~~~~  238 (312)
                      ||||++|++|++|+.+++++|.+..|.++++||+.||+..|+.++++||.+|++.|+|+++++++.+||||||||||.++
T Consensus       249 ylip~~~llg~~Pt~~lL~~~~~~~~~~lv~aVr~Gnl~~f~~al~~~E~~f~~~gi~l~l~~l~lv~yrnL~kkv~~~~  328 (394)
T KOG2688|consen  249 YLIPTGLLLGRIPTKELLDFYTLDKYSPLVQAVRSGNLRLFDLALADNERFFIRSGIYLTLEKLPLVVYRNLFKKVIQLW  328 (394)
T ss_pred             HHhHHHHHhccCcchhhHhHhhHHhHHHHHHHHHhccHHHHHHHHhhhHHHHHHhccHHHhhhhhHHHHHHHHHHHHHHh
Confidence            99999999999999999999998899999999999999999999999999999999999999999999999999999998


Q ss_pred             hcCCCCCCccccHHHHHHHHhhcc-CCCCHHHHHHHHHHhHHcCcceEEEeeCCeEEEEccCCCCCCCCC
Q 021452          239 KQKDPSKAHQMKLDVIVKALKWLE-MDMDVDEVECIVAILIHKNLVKGYFAHKSKVVVLSKQDPFPKLNG  307 (312)
Q Consensus       239 ~~~~~~~~~~I~l~~i~~al~~~~-~~~~~~evE~ila~LI~~G~IkGyIsh~~~~lVlSK~~pFP~~~~  307 (312)
                           ++++++|++.|..|++.++ .+.+.||+||+|||||++|+|||||||+++++|+||++|||.++.
T Consensus       329 -----~~~~~lpls~~~~al~~~~~~~~~~deveciLa~lI~~G~ikgYish~~~~~V~sK~~pfp~~v~  393 (394)
T KOG2688|consen  329 -----GKTSQLPLSRFLTALQFSGVTDVDLDEVECILANLIDLGRIKGYISHQLQTLVFSKKDPFPHLVL  393 (394)
T ss_pred             -----CCCCCCCHHHHHHHHhhcCCCCCchhhHHHHHHhhhhhccccchhchhhheEEEecCCCCCCCCC
Confidence                 4789999999999999987 458999999999999999999999999999999999999999875

>COG5600 Transcription-associated recombination protein [DNA replication, recombination, and repair] Back     alignment and domain information
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] Back     alignment and domain information
>PF01399 PCI: PCI domain; InterPro: IPR000717 A homology domain of unclear function, occurs in the C-terminal region of several regulatory components of the 26S proteasome as well as in other proteins Back     alignment and domain information
>KOG1463 consensus 26S proteasome regulatory complex, subunit RPN6/PSMD11 [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG2582 consensus COP9 signalosome, subunit CSN3 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] Back     alignment and domain information
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>smart00753 PAM PCI/PINT associated module Back     alignment and domain information
>smart00088 PINT motif in proteasome subunits, Int-6, Nip-1 and TRIP-15 Back     alignment and domain information
>KOG2753 consensus Uncharacterized conserved protein, contains PCI domain [General function prediction only] Back     alignment and domain information
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [] Back     alignment and domain information
>KOG1497 consensus COP9 signalosome, subunit CSN4 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] Back     alignment and domain information
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] Back     alignment and domain information
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG1498 consensus 26S proteasome regulatory complex, subunit RPN5/PSMD12 [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG1076 consensus Translation initiation factor 3, subunit c (eIF-3c) [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PF13371 TPR_9: Tetratricopeptide repeat Back     alignment and domain information
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B Back     alignment and domain information
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] Back     alignment and domain information
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] Back     alignment and domain information
>KOG2758 consensus Translation initiation factor 3, subunit e (eIF-3e) [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>COG5071 RPN5 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A Back     alignment and domain information
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment Back     alignment and domain information
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A Back     alignment and domain information
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H Back     alignment and domain information
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A Back     alignment and domain information
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A Back     alignment and domain information
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD Back     alignment and domain information
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C Back     alignment and domain information
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A Back     alignment and domain information
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C Back     alignment and domain information
>PRK15359 type III secretion system chaperone protein SscB; Provisional Back     alignment and domain information
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A Back     alignment and domain information
>PF09012 FeoC: FeoC like transcriptional regulator; InterPro: IPR015102 This entry contains several transcriptional regulators, including FeoC, which contain a HTH motif Back     alignment and domain information
>PF13428 TPR_14: Tetratricopeptide repeat Back     alignment and domain information
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function Back     alignment and domain information
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF Back     alignment and domain information
>KOG2072 consensus Translation initiation factor 3, subunit a (eIF-3a) [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>smart00028 TPR Tetratricopeptide repeats Back     alignment and domain information
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome Back     alignment and domain information
>KOG2300 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A Back     alignment and domain information
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query312
3t5x_A203 Pcid2:dss1 Structure Length = 203 3e-40
3t5v_B455 Sac3:thp1:sem1 Complex Length = 455 5e-05
>pdb|3T5X|A Chain A, Pcid2:dss1 Structure Length = 203 Back     alignment and structure 
Iteration: 1

 Score =  162 bits (409), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 79/201 (39%), Positives = 134/201 (66%), Gaps = 7/201 (3%)
Query: 107 EEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNPQSEANIRMILKYLIPVKLS 166
           +++    +VTY YY GR  +F+ +F  A++ LS+A  +C+  S+ N RMIL YL+PVK+ 
Sbjct: 6   DDYSTAQRVTYKYYVGRKAMFDSDFKQAEEYLSFAFEHCHRSSQKNKRMILIYLLPVKML 65
Query: 167 IGILPKDWLLEKYNLVEYSNIVQALRRGDXXXXXXXXXXXXDQFLRSGVYLVLEKLELQV 226
           +G +P   LL+KY+L++++ + +A+  G+              F+R G++L+LEKL++  
Sbjct: 66  LGHMPTVELLKKYHLMQFAEVTRAVSEGNLLLLHEALAKHEAFFIRCGIFLILEKLKIIT 125
Query: 227 YQRLFKKIYIIQKQKDPSKAHQMKLDVIVKALKWLEM-DMDVDEVECIVAILIHKNLVKG 285
           Y+ LFKK+Y++       K HQ+ LD  + ALK++++ D+D+DEV+CI+A LI+   VKG
Sbjct: 126 YRNLFKKVYLL------LKTHQLSLDAFLVALKFMQVEDVDIDEVQCILANLIYMGHVKG 179
Query: 286 YFAHKSKVVVLSKQDPFPKLN 306
           Y +H+ + +V+SKQ+PFP L+
Sbjct: 180 YISHQHQKLVVSKQNPFPPLS 200
>pdb|3T5V|B Chain B, Sac3:thp1:sem1 Complex Length = 455 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query312
3t5v_B455 Nuclear mRNA export protein THP1; PCI, mRNA nuclea 8e-76
3t5x_A203 PCI domain-containing protein 2; PCI, mRNA nuclear 7e-68
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 6e-07
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-05
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 8e-04
>3t5v_B Nuclear mRNA export protein THP1; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae} Length = 455 Back     alignment and structure
 Score =  238 bits (608), Expect = 8e-76
 Identities = 58/312 (18%), Positives = 119/312 (38%), Gaps = 39/312 (12%)

Query: 31  SIADRELASNGKSPEKLKAAGSFLMKVFGVL---------AGKGSKRVGALYLTCQLFKI 81
            +    L  + +S + L    S L ++F  +              K+   LYL  +L  I
Sbjct: 126 KLDSFHLQLHTRSHQFLSHISSILSRLFNSIKPPRGNASSTNIPGKQRILLYLVNKLNNI 185

Query: 82  YFKLGTVHLCRSVIRSIETARIF-DFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSY 140
           YF++ +  LC ++ ++ +   +   F E+    ++ Y Y  GR  + N     A  + + 
Sbjct: 186 YFRIESPQLCSNIFKNFQPKSMLAHFNEYQLDQQIEYRYLLGRYYLLNSQVHNAFVQFNE 245

Query: 141 AL------INCNPQSEANIRMILKYLIPVKLSIGILPKDWLLE----KYNLVEYSNIVQA 190
           A          N     N   IL Y+IP  L +G + K   L     +  +  +S + + 
Sbjct: 246 AFQSLLNLPLTNQAITRNGTRILNYMIPTGLILGKMVKWGPLRPFLSQETIDNWSVLYKH 305

Query: 191 LRRGDLRLLRHALEEHEDQFLRSGVYLVL-EKLELQVYQRLFKKIYIIQKQKDPSKAHQM 249
           +R G+++ +   L ++E       + +VL EKL +  Y+ L K +            +++
Sbjct: 306 VRYGNIQGVSLWLRQNERHLCARQLLIVLLEKLPMVTYRNLIKTVIKSWTT--EWGQNKL 363

Query: 250 KLDVIVKALK----------------WLEMDMDVDEVECIVAILIHKNLVKGYFAHKSKV 293
              +I + L+                          VE ++  LI+  L++     + ++
Sbjct: 364 PYSLIERVLQLSIGPTFEDPGAQEITIYNGIHSPKNVENVLVTLINLGLLRANCFPQLQL 423

Query: 294 VVLSKQDPFPKL 305
            V+ K     ++
Sbjct: 424 CVVKKTTMIQEI 435
>3t5x_A PCI domain-containing protein 2; PCI, mRNA nuclear export, transcription; 2.12A {Homo sapiens} Length = 203 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query312
3t5v_B455 Nuclear mRNA export protein THP1; PCI, mRNA nuclea 100.0
3t5x_A203 PCI domain-containing protein 2; PCI, mRNA nuclear 100.0
4b4t_S523 RPN3, 26S proteasome regulatory subunit RPN3; hydr 100.0
3txn_A394 26S proteasome regulatory complex subunit P42B; PC 99.82
4b4t_O393 26S proteasome regulatory subunit RPN9; hydrolase, 99.69
4b4t_P445 26S proteasome regulatory subunit RPN5; hydrolase, 99.64
4b4t_Q434 26S proteasome regulatory subunit RPN6; hydrolase, 99.49
4b4t_R429 RPN7, 26S proteasome regulatory subunit RPN7; hydr 99.49
4b0z_A229 RPN12, 26S proteasome regulatory subunit RPN12; pr 98.75
3chm_A169 COP9 signalosome complex subunit 7; heat/ARM repea 98.32
1ufm_A84 COP9 complex subunit 4; helix-turn-helix, structur 98.06
3ma5_A100 Tetratricopeptide repeat domain protein; NESG, str 93.25
3gw4_A203 Uncharacterized protein; structural genomics, PSI- 93.04
3ro3_A164 PINS homolog, G-protein-signaling modulator 2; asy 92.97
4ga2_A150 E3 SUMO-protein ligase ranbp2; TPR motif, nuclear 92.7
2xev_A129 YBGF; tetratricopeptide, alpha-helical, metal bind 92.63
2lni_A133 Stress-induced-phosphoprotein 1; structural genomi 92.52
2fbn_A198 70 kDa peptidylprolyl isomerase, putative; sulfur 92.51
3sz7_A164 HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G 92.4
3k9i_A117 BH0479 protein; putative protein binding protein, 92.34
2vyi_A131 SGTA protein; chaperone, TPR repeat, phosphoprotei 92.19
2qfc_A293 PLCR protein; TPR, HTH, transcription regulation; 91.91
3ulq_A383 Response regulator aspartate phosphatase F; tetrat 91.82
4gco_A126 Protein STI-1; structural genomics, PSI-biology, m 91.56
2kc7_A99 BFR218_protein; tetratricopeptide repeat, all-alph 91.5
2kat_A115 Uncharacterized protein; NESG, structure, structur 91.49
2dba_A148 Smooth muscle cell associated protein-1, isoform 2 91.4
2xev_A129 YBGF; tetratricopeptide, alpha-helical, metal bind 91.23
3rkv_A162 Putative peptidylprolyl isomerase; structural geno 91.19
3q15_A378 PSP28, response regulator aspartate phosphatase H; 91.19
1qqe_A292 Vesicular transport protein SEC17; helix-turn-heli 91.11
1na3_A91 Designed protein CTPR2; de novo protein; HET: IPT; 91.02
2l6j_A111 TPR repeat-containing protein associated with HSP; 91.0
3ro3_A164 PINS homolog, G-protein-signaling modulator 2; asy 90.94
3hym_B330 Cell division cycle protein 16 homolog; APC, anaph 90.89
1elw_A118 TPR1-domain of HOP; HOP, TPR-domain, peptide-compl 90.87
2vgx_A148 Chaperone SYCD; alternative dimer assembly, tetrat 90.82
3uq3_A258 Heat shock protein STI1; HSP90, peptide binding, c 90.65
3gyz_A151 Chaperone protein IPGC; asymmetric homodimer, tetr 90.52
3q49_B137 STIP1 homology and U box-containing protein 1; E3 90.52
2xcb_A142 PCRH, regulatory protein PCRH; protein transport, 90.52
3u3w_A293 Transcriptional activator PLCR protein; ternary co 90.17
3upv_A126 Heat shock protein STI1; TPR-fold, adaptor protein 89.72
3gw4_A203 Uncharacterized protein; structural genomics, PSI- 89.64
2kck_A112 TPR repeat; tetratricopeptide repeat, structural g 89.56
1hh8_A213 P67PHOX, NCF-2, neutrophil cytosol factor 2; cell 89.55
2kck_A112 TPR repeat; tetratricopeptide repeat, structural g 89.34
2qfc_A293 PLCR protein; TPR, HTH, transcription regulation; 89.32
3sf4_A406 G-protein-signaling modulator 2; tetratricopeptide 88.87
1elr_A131 TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp 88.81
3q15_A378 PSP28, response regulator aspartate phosphatase H; 88.7
1elw_A118 TPR1-domain of HOP; HOP, TPR-domain, peptide-compl 88.62
3q49_B137 STIP1 homology and U box-containing protein 1; E3 88.59
2xcb_A142 PCRH, regulatory protein PCRH; protein transport, 88.43
2ifu_A307 Gamma-SNAP; membrane fusion, snare complex disasse 88.35
4gco_A126 Protein STI-1; structural genomics, PSI-biology, m 88.22
2fo7_A136 Synthetic consensus TPR protein; tetratricopeptide 88.12
2lni_A133 Stress-induced-phosphoprotein 1; structural genomi 88.1
3as5_A186 MAMA; tetratricopeptide repeats (TPR) containing p 88.05
3sz7_A164 HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G 87.7
3u3w_A293 Transcriptional activator PLCR protein; ternary co 87.69
2vgx_A148 Chaperone SYCD; alternative dimer assembly, tetrat 87.66
3vtx_A184 MAMA; tetratricopeptide repeats (TPR) containing p 87.58
3ieg_A359 DNAJ homolog subfamily C member 3; TPR motif, chap 87.44
3sf4_A406 G-protein-signaling modulator 2; tetratricopeptide 87.23
3qky_A261 Outer membrane assembly lipoprotein YFIO; membrane 87.21
3nf1_A311 KLC 1, kinesin light chain 1; TPR, structural geno 87.2
3qww_A433 SET and MYND domain-containing protein 2; methyltr 87.11
3u4t_A272 TPR repeat-containing protein; structural genomics 87.05
3ulq_A383 Response regulator aspartate phosphatase F; tetrat 87.05
2ho1_A252 Type 4 fimbrial biogenesis protein PILF; type IV p 87.01
1a17_A166 Serine/threonine protein phosphatase 5; hydrolase, 86.99
3nf1_A311 KLC 1, kinesin light chain 1; TPR, structural geno 86.98
3ro2_A338 PINS homolog, G-protein-signaling modulator 2; TPR 86.97
1qqe_A292 Vesicular transport protein SEC17; helix-turn-heli 86.96
2q7f_A243 YRRB protein; TPR, protein binding; 2.49A {Bacillu 86.92
4a1s_A411 PINS, partner of inscuteable; cell cycle, LGN, mit 86.85
3ro2_A338 PINS homolog, G-protein-signaling modulator 2; TPR 86.67
4i17_A228 Hypothetical protein; TPR repeats protein, structu 86.44
2dba_A148 Smooth muscle cell associated protein-1, isoform 2 86.43
3upv_A126 Heat shock protein STI1; TPR-fold, adaptor protein 86.41
2e2e_A177 Formate-dependent nitrite reductase complex NRFG; 86.3
2yhc_A225 BAMD, UPF0169 lipoprotein YFIO; essential BAM comp 86.28
3gyz_A151 Chaperone protein IPGC; asymmetric homodimer, tetr 86.16
1na0_A125 Designed protein CTPR3; de novo protein; HET: IPT; 85.91
1na0_A125 Designed protein CTPR3; de novo protein; HET: IPT; 85.9
4a1s_A411 PINS, partner of inscuteable; cell cycle, LGN, mit 85.87
4b4t_Q434 26S proteasome regulatory subunit RPN6; hydrolase, 85.78
1hz4_A373 MALT regulatory protein; two-helix bundles, helix 85.77
1xnf_A275 Lipoprotein NLPI; TPR, tetratricopeptide, structur 85.74
3urz_A208 Uncharacterized protein; tetratricopeptide repeats 85.6
2vq2_A225 PILW, putative fimbrial biogenesis and twitching m 85.53
1hxi_A121 PEX5, peroxisome targeting signal 1 receptor PEX5; 85.52
2ho1_A252 Type 4 fimbrial biogenesis protein PILF; type IV p 85.35
2xpi_A597 Anaphase-promoting complex subunit CUT9; cell cycl 85.34
3mv2_B310 Coatomer subunit epsilon; vesicular membrane coat 85.21
1kt0_A457 FKBP51, 51 kDa FK506-binding protein; FKBP-like pp 85.16
4gcn_A127 Protein STI-1; structural genomics, PSI-biology, m 85.06
1elr_A131 TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp 85.02
3uq3_A258 Heat shock protein STI1; HSP90, peptide binding, c 85.01
1hh8_A213 P67PHOX, NCF-2, neutrophil cytosol factor 2; cell 84.82
3edt_B283 KLC 2, kinesin light chain 2; superhelical, struct 84.67
2vyi_A131 SGTA protein; chaperone, TPR repeat, phosphoprotei 84.65
2vq2_A225 PILW, putative fimbrial biogenesis and twitching m 84.62
3qky_A261 Outer membrane assembly lipoprotein YFIO; membrane 84.47
3u4t_A272 TPR repeat-containing protein; structural genomics 84.17
1a17_A166 Serine/threonine protein phosphatase 5; hydrolase, 84.15
3as5_A186 MAMA; tetratricopeptide repeats (TPR) containing p 84.13
3n71_A490 Histone lysine methyltransferase SMYD1; heart deve 84.09
2fo7_A136 Synthetic consensus TPR protein; tetratricopeptide 84.06
1ihg_A370 Cyclophilin 40; ppiase immunophilin tetratricopept 83.9
4abn_A474 Tetratricopeptide repeat protein 5; P53 cofactor, 83.28
3cv0_A327 Peroxisome targeting signal 1 receptor PEX5; TPR m 82.78
3vtx_A184 MAMA; tetratricopeptide repeats (TPR) containing p 82.78
2ifu_A307 Gamma-SNAP; membrane fusion, snare complex disasse 82.77
1p5q_A336 FKBP52, FK506-binding protein 4; isomerase; 2.80A 82.75
4eqf_A365 PEX5-related protein; accessory protein, tetratric 82.56
4gcn_A127 Protein STI-1; structural genomics, PSI-biology, m 82.41
2v5f_A104 Prolyl 4-hydroxylase subunit alpha-1; endoplasmic 82.14
2v5f_A104 Prolyl 4-hydroxylase subunit alpha-1; endoplasmic 82.13
2q7f_A243 YRRB protein; TPR, protein binding; 2.49A {Bacillu 81.94
4ga2_A150 E3 SUMO-protein ligase ranbp2; TPR motif, nuclear 81.84
3edt_B283 KLC 2, kinesin light chain 2; superhelical, struct 81.37
1fch_A368 Peroxisomal targeting signal 1 receptor; protein-p 81.08
2yhc_A225 BAMD, UPF0169 lipoprotein YFIO; essential BAM comp 81.04
4i17_A228 Hypothetical protein; TPR repeats protein, structu 80.94
3qwp_A429 SET and MYND domain-containing protein 3; SMYD3,SE 80.7
3hym_B330 Cell division cycle protein 16 homolog; APC, anaph 80.09
>3t5v_B Nuclear mRNA export protein THP1; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae} Back     alignment and structure
Probab=100.00  E-value=9e-73  Score=554.03  Aligned_cols=293  Identities=21%  Similarity=0.322  Sum_probs=269.8

Q ss_pred             CCCcc---chhhhHHHHHHHHHHHHHHHHHHHHHh-CCCChHHHHHHHHHHHHHhhhhcCCC------C---chhHHHHH
Q 021452            8 NNCML---LQCFHSGVSELGIRLGFGSIADRELAS-NGKSPEKLKAAGSFLMKVFGVLAGKG------S---KRVGALYL   74 (312)
Q Consensus         8 ~~~~~---~~~~~~~~~~~~lr~~la~~~D~~~~~-~~~~~~~le~~~~~i~~~f~~~~~d~------s---Kk~~~~~~   74 (312)
                      .-+|+   +|+++.  ++..++. +|.++|++... +..+.+++|+||++|+|+|++|++|+      |   ||+|+||+
T Consensus       102 ~~~wi~~l~p~~~~--~~~~l~~-~a~~lD~~~~~~~~~~~~~le~~a~~i~k~F~~cl~Dr~~~~~~s~p~kk~~~l~l  178 (455)
T 3t5v_B          102 NAPHIEMLIPVATR--ETEFIIN-LAGKLDSFHLQLHTRSHQFLSHISSILSRLFNSIKPPRGNASSTNIPGKQRILLYL  178 (455)
T ss_dssp             TCTTHHHHHHHHHH--HHHHHHH-HHHHHHHTHHHHTCCTTHHHHHHHHHHHHHHHHCCCC----CCSSCCHHHHHHHHH
T ss_pred             CCchHHHhHHHHHH--HHHHHHH-HHHHhhhhHhhhcccchhHHHHHHHHHHHHHHHhcccCCCcccccccccchhHHHH
Confidence            34897   999999  9999999 99999999843 33457899999999999999999983      3   99999999


Q ss_pred             HHHHHHHHHhcCChhhHHHHHHHhhccC-CCCCCCCCchhhHHHHHHHHHHhhHhcChHHHHHHHHHHHHh-cCcc----
Q 021452           75 TCQLFKIYFKLGTVHLCRSVIRSIETAR-IFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALIN-CNPQ----  148 (312)
Q Consensus        75 ~n~l~k~Yfkl~~~~l~~~lik~i~~~~-~p~~~~~~~~~~v~y~YY~G~~~~~~~~~~~A~~~L~~A~~~-c~~~----  148 (312)
                      +|++||+|||+|++++|+|++++++++. +|+++.||++|+|||+||+||+++++++|.+|+++|++||++ ||.+    
T Consensus       179 ~n~L~kiYFkl~~~~lckni~k~i~~~~~~p~~~~~p~~q~v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~lcp~~~~~~  258 (455)
T 3t5v_B          179 VNKLNNIYFRIESPQLCSNIFKNFQPKSMLAHFNEYQLDQQIEYRYLLGRYYLLNSQVHNAFVQFNEAFQSLLNLPLTNQ  258 (455)
T ss_dssp             HHHHHHHHHHSSCCTTHHHHHHTHHHHCCCSCGGGSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCCCCH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHhccCCCCcChhhCCccceEeeeHHHHHHHHHHccHHHHHHHHHHHHHhcCCccccch
Confidence            9999999999999999999999999864 468999999999999999999999999999999999999999 9987    


Q ss_pred             -chHHHHHHHHHHHHHHhhcCCCCCchhhhh---hchhc-hHHHHHHHHhCCHHHHHHHHHHchHHHHHhcH-HHHHHhh
Q 021452          149 -SEANIRMILKYLIPVKLSIGILPKDWLLEK---YNLVE-YSNIVQALRRGDLRLLRHALEEHEDQFLRSGV-YLVLEKL  222 (312)
Q Consensus       149 -~~~nk~~IL~yLIpv~Ll~G~~P~~~ll~~---y~l~~-y~~L~~Avk~Gnl~~f~~~l~~~~~~f~~~gl-ylllerl  222 (312)
                       +.+|+++||+||||++|++|++|++.++++   +.+.+ |.+|++|||+||+.+|++++++|+++|+++|+ |++++|+
T Consensus       259 ~~~~n~~~ILkyLIpv~LLlG~~P~~~ll~k~~~~~L~~~y~~L~~AVr~Gdl~~F~~~L~~~~~~f~~~gily~LlerL  338 (455)
T 3t5v_B          259 AITRNGTRILNYMIPTGLILGKMVKWGPLRPFLSQETIDNWSVLYKHVRYGNIQGVSLWLRQNERHLCARQLLIVLLEKL  338 (455)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTCCBCHHHHGGGSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHHTTCHHHHHHHH
T ss_pred             hhhhHHHHHHHHHHHHHHHcCCCCCHHHHcccchHHHHHHHHHHHHHHHhCCHHHHHHHHHHhHHHHHHcCCHHHHHHHH
Confidence             478999999999999999999999999998   45776 99999999999999999999999999999999 9999999


Q ss_pred             HHHHHHHHHHHH---HHHhhcCCCCCCccccHHHHHHHHhhccCC----------------CCHHHHHHHHHHhHHcCcc
Q 021452          223 ELQVYQRLFKKI---YIIQKQKDPSKAHQMKLDVIVKALKWLEMD----------------MDVDEVECIVAILIHKNLV  283 (312)
Q Consensus       223 r~lv~r~L~kkv---~~~~~~~~~~~~~~I~l~~i~~al~~~~~~----------------~~~~evE~ila~LI~~G~I  283 (312)
                      |.+|||||+|+|   |.+.     .++++||+++|+.|+++++.+                .|+||||||+|+||++|+|
T Consensus       339 r~~v~RnLirkv~~~~~~~-----~~~srI~l~~i~~aL~~~~~~~~~~~~~~~~~~~~~~~~~devEcIlA~LI~~G~I  413 (455)
T 3t5v_B          339 PMVTYRNLIKTVIKSWTTE-----WGQNKLPYSLIERVLQLSIGPTFEDPGAQEITIYNGIHSPKNVENVLVTLINLGLL  413 (455)
T ss_dssp             HHHHHHHHHHHHHHHHTTT-----TCCCEEEHHHHHHHHHHHHCCCTTSTTCCCCCTTTSSCCSSCHHHHHHHHHHHTSC
T ss_pred             HHHHHHHHHHHHHHHHHhc-----CCCCeeeHHHHHHHHhhccCccccccccccccccccCCCHHHHHHHHHHHHHcCCe
Confidence            999999999999   5543     356999999999999986432                6899999999999999999


Q ss_pred             eEEEeeCCeEEEEccC----CCCCCCCCC
Q 021452          284 KGYFAHKSKVVVLSKQ----DPFPKLNGK  308 (312)
Q Consensus       284 kGyIsh~~~~lVlSK~----~pFP~~~~~  308 (312)
                      ||||+|+++++|+||+    +|||+++++
T Consensus       414 kGyIsh~~~~lVlSK~~~~~~pFP~l~~~  442 (455)
T 3t5v_B          414 RANCFPQLQLCVVKKTTMIQEIVPPVNER  442 (455)
T ss_dssp             CEEEETTTTEEEECCCSCGGGTSCCHHHH
T ss_pred             EEEEecCCCEEEECCCCCCCCCCCChHHH
Confidence            9999999999999999    999998653
>3t5x_A PCI domain-containing protein 2; PCI, mRNA nuclear export, transcription; 2.12A {Homo sapiens} Back     alignment and structure
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} Back     alignment and structure
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A Back     alignment and structure
>4b4t_O 26S proteasome regulatory subunit RPN9; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} Back     alignment and structure
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} Back     alignment and structure
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} Back     alignment and structure
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} Back     alignment and structure
>4b0z_A RPN12, 26S proteasome regulatory subunit RPN12; protein binding, proteasome ubitquitin; HET: SGM GOL; 1.58A {Schizosaccharomyces pombe} Back     alignment and structure
>3chm_A COP9 signalosome complex subunit 7; heat/ARM repeats, winged helix motif, developmental protein, phosphoprotein; 1.50A {Arabidopsis thaliana} Back     alignment and structure
>1ufm_A COP9 complex subunit 4; helix-turn-helix, structural genomics, riken structural genomics/proteomics initiative, RSGI, signaling protein; NMR {Mus musculus} SCOP: a.4.5.47 Back     alignment and structure
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A Back     alignment and structure
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} Back     alignment and structure
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} Back     alignment and structure
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* Back     alignment and structure
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} Back     alignment and structure
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} Back     alignment and structure
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 Back     alignment and structure
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} Back     alignment and structure
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} Back     alignment and structure
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 Back     alignment and structure
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} Back     alignment and structure
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} Back     alignment and structure
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} Back     alignment and structure
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} Back     alignment and structure
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} Back     alignment and structure
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} Back     alignment and structure
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} Back     alignment and structure
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} Back     alignment and structure
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 Back     alignment and structure
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A Back     alignment and structure
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} Back     alignment and structure
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} Back     alignment and structure
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Back     alignment and structure
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 Back     alignment and structure
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* Back     alignment and structure
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Back     alignment and structure
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A Back     alignment and structure
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* Back     alignment and structure
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Back     alignment and structure
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A Back     alignment and structure
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} Back     alignment and structure
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} Back     alignment and structure
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} Back     alignment and structure
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* Back     alignment and structure
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} Back     alignment and structure
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} Back     alignment and structure
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} Back     alignment and structure
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A Back     alignment and structure
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} Back     alignment and structure
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 Back     alignment and structure
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* Back     alignment and structure
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Back     alignment and structure
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} Back     alignment and structure
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} Back     alignment and structure
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A Back     alignment and structure
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} Back     alignment and structure
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Back     alignment and structure
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} Back     alignment and structure
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A Back     alignment and structure
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* Back     alignment and structure
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A Back     alignment and structure
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Back     alignment and structure
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} Back     alignment and structure
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} Back     alignment and structure
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} Back     alignment and structure
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* Back     alignment and structure
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Back     alignment and structure
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} Back     alignment and structure
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Back     alignment and structure
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A Back     alignment and structure
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} Back     alignment and structure
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} Back     alignment and structure
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 Back     alignment and structure
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Back     alignment and structure
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} Back     alignment and structure
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} Back     alignment and structure
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} Back     alignment and structure
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} Back     alignment and structure
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} Back     alignment and structure
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A Back     alignment and structure
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A Back     alignment and structure
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A Back     alignment and structure
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A Back     alignment and structure
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} Back     alignment and structure
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} Back     alignment and structure
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 Back     alignment and structure
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Back     alignment and structure
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Back     alignment and structure
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Back     alignment and structure
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 Back     alignment and structure
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Back     alignment and structure
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Back     alignment and structure
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B Back     alignment and structure
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A Back     alignment and structure
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} Back     alignment and structure
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A Back     alignment and structure
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Back     alignment and structure
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* Back     alignment and structure
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A Back     alignment and structure
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 Back     alignment and structure
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Back     alignment and structure
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} Back     alignment and structure
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Back     alignment and structure
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A Back     alignment and structure
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Back     alignment and structure
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} Back     alignment and structure
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A Back     alignment and structure
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A Back     alignment and structure
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} Back     alignment and structure
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Back     alignment and structure
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A Back     alignment and structure
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} Back     alignment and structure
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A Back     alignment and structure
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Back     alignment and structure
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} Back     alignment and structure
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A Back     alignment and structure
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A Back     alignment and structure
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Back     alignment and structure
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* Back     alignment and structure
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A Back     alignment and structure
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Back     alignment and structure
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A Back     alignment and structure
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} Back     alignment and structure
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* Back     alignment and structure
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query312
d1ufma_84 COP9 signalosome complex subunit 4, GSN4 {Mouse (M 98.13
d1nzna_122 Mitochondria fission protein Fis1 {Human (Homo sap 93.27
d1tjca_95 Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human 93.24
d1qqea_290 Vesicular transport protein sec17 {Baker's yeast ( 92.78
d2fbna1153 Putative 70 kda peptidylprolyl isomerase PFL2275c 92.46
d1elwa_117 Hop {Human (Homo sapiens) [TaxId: 9606]} 91.66
d1p5qa1170 FKBP52 (FKBP4), C-terminal domain {Human (Homo sap 90.54
d1xnfa_259 Lipoprotein NlpI {Escherichia coli [TaxId: 562]} 90.04
d1tjca_95 Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human 90.02
d1hxia_112 Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 89.18
d1kt1a1168 FKBP51, C-terminal domain {Monkey (Saimiri bolivie 88.55
d1a17a_159 Protein phosphatase 5 {Human (Homo sapiens) [TaxId 88.37
d2c2la1201 STIP1 homology and U box-containing protein 1, STU 87.73
d2cfxa163 Transcriptional regulator LrpC {Bacillus subtilis 87.43
d1ihga1169 Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} 86.6
d1wi9a_72 Hypothetical protein C20orf116 homolog {Mouse (Mus 86.24
d1w3ba_ 388 O-GlcNAc transferase p110 subunit, OGT {Human (Hom 85.84
d2hr2a1156 Hypothetical protein CT2138 {Chlorobium tepidum [T 85.72
d2pqrb1124 Mitochondria fission protein Fis1 {Baker's yeast ( 84.78
d2c2la1201 STIP1 homology and U box-containing protein 1, STU 84.73
d1i1ga160 LprA {Archaeon Pyrococcus furiosus [TaxId: 2261]} 84.35
d1a17a_159 Protein phosphatase 5 {Human (Homo sapiens) [TaxId 84.32
d1fcha_323 Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 83.74
d1elwa_117 Hop {Human (Homo sapiens) [TaxId: 9606]} 82.31
d2cg4a163 Regulatory protein AsnC {Escherichia coli [TaxId: 82.23
d1w3ba_388 O-GlcNAc transferase p110 subunit, OGT {Human (Hom 81.95
d1hz4a_366 Transcription factor MalT domain III {Escherichia 81.35
d2cyya160 Putative transcriptional regulator PH1519 {Archaeo 80.91
d1xnfa_259 Lipoprotein NlpI {Escherichia coli [TaxId: 562]} 80.09
d1hh8a_192 Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H 80.03
>d1ufma_ a.4.5.47 (A:) COP9 signalosome complex subunit 4, GSN4 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: PCI domain (PINT motif)
domain: COP9 signalosome complex subunit 4, GSN4
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.13  E-value=2.7e-06  Score=62.38  Aligned_cols=48  Identities=13%  Similarity=0.313  Sum_probs=44.6

Q ss_pred             ccccHHHHHHHHhhccCCCCHHHHHHHHHHhHHcCcceEEEeeCCeEEEEccC
Q 021452          247 HQMKLDVIVKALKWLEMDMDVDEVECIVAILIHKNLVKGYFAHKSKVVVLSKQ  299 (312)
Q Consensus       247 ~~I~l~~i~~al~~~~~~~~~~evE~ila~LI~~G~IkGyIsh~~~~lVlSK~  299 (312)
                      ++|+++.++..|.     ++.+|+|.++++||.+|.|+|+|++.+++|.+.+.
T Consensus        29 ~~Isl~~la~~l~-----l~~~evE~~l~~mI~~~~i~akIDq~~g~V~F~~~   76 (84)
T d1ufma_          29 NNITFEELGALLE-----IPAAKAEKIASQMITEGRMNGFIDQIDGIVHFETR   76 (84)
T ss_dssp             SEEEHHHHHHHTT-----SCHHHHHHHHHHHHHTTSSCEEEETTTTEEEECCS
T ss_pred             ceeeHHHHHHHHC-----CCHHHHHHHHHHHHhcCeEEEEEeCCCCEEEECCC
Confidence            8899999999998     68999999999999999999999999999998543
>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} Back     information, alignment and structure
>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} Back     information, alignment and structure
>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} Back     information, alignment and structure
>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d2cfxa1 a.4.5.32 (A:1-63) Transcriptional regulator LrpC {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1wi9a_ a.4.5.47 (A:) Hypothetical protein C20orf116 homolog {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} Back     information, alignment and structure
>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1i1ga1 a.4.5.32 (A:2-61) LprA {Archaeon Pyrococcus furiosus [TaxId: 2261]} Back     information, alignment and structure
>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2cg4a1 a.4.5.32 (A:4-66) Regulatory protein AsnC {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2cyya1 a.4.5.32 (A:5-64) Putative transcriptional regulator PH1519 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Back     information, alignment and structure
>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure